Query 014105
Match_columns 430
No_of_seqs 407 out of 1693
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 9.8E-23 3.4E-27 148.2 0.6 57 294-354 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 9.9E-17 3.4E-21 128.6 5.7 88 139-227 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.4 9.6E-15 3.3E-19 114.7 -3.8 78 209-290 4-85 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.2 9.1E-13 3.1E-17 111.7 -1.2 117 139-312 5-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 99.2 2.6E-13 8.8E-18 104.9 -6.0 68 206-277 2-75 (80)
6 3hcs_A TNF receptor-associated 98.8 1.3E-09 4.4E-14 96.6 1.8 83 138-245 15-97 (170)
7 2ct2_A Tripartite motif protei 98.6 2.9E-08 9.9E-13 77.6 5.7 60 139-206 13-74 (88)
8 2ecv_A Tripartite motif-contai 98.6 2E-08 6.8E-13 77.8 4.8 56 139-201 17-72 (85)
9 2ecy_A TNF receptor-associated 98.6 2.2E-08 7.7E-13 74.0 4.7 52 138-201 12-63 (66)
10 2ecw_A Tripartite motif-contai 98.6 3.1E-08 1.1E-12 76.7 5.7 56 139-201 17-72 (85)
11 1rmd_A RAG1; V(D)J recombinati 98.6 2.9E-08 9.9E-13 82.0 5.7 80 141-244 23-102 (116)
12 3hct_A TNF receptor-associated 98.6 8.7E-08 3E-12 79.4 8.2 83 138-245 15-97 (118)
13 2d8t_A Dactylidin, ring finger 98.6 2.7E-08 9.2E-13 74.7 4.1 56 137-205 11-66 (71)
14 2egp_A Tripartite motif-contai 98.6 1.2E-08 4.1E-13 78.1 1.6 58 139-202 10-67 (79)
15 3ztg_A E3 ubiquitin-protein li 98.6 4.9E-08 1.7E-12 77.1 4.6 49 139-198 11-60 (92)
16 2ysl_A Tripartite motif-contai 98.6 3.5E-08 1.2E-12 74.3 3.5 53 139-201 18-70 (73)
17 2ysj_A Tripartite motif-contai 98.5 1E-07 3.4E-12 69.7 5.8 44 139-190 18-61 (63)
18 2djb_A Polycomb group ring fin 98.5 6.7E-08 2.3E-12 72.7 4.7 52 139-203 13-65 (72)
19 2csy_A Zinc finger protein 183 98.5 1.2E-07 4.2E-12 72.9 6.2 49 138-199 12-60 (81)
20 1jm7_A BRCA1, breast cancer ty 98.5 9.4E-08 3.2E-12 78.2 5.5 69 141-219 21-90 (112)
21 3knv_A TNF receptor-associated 98.5 1.3E-08 4.5E-13 87.2 0.3 84 139-244 29-118 (141)
22 2yu4_A E3 SUMO-protein ligase 98.5 9.7E-08 3.3E-12 75.9 5.4 57 139-200 5-63 (94)
23 1t1h_A Gspef-atpub14, armadill 98.5 7.6E-08 2.6E-12 73.5 4.5 51 139-201 6-56 (78)
24 1e4u_A Transcriptional repress 98.5 8.6E-08 2.9E-12 73.4 4.6 53 139-201 9-63 (78)
25 2yur_A Retinoblastoma-binding 98.5 1.4E-07 4.9E-12 71.3 5.6 49 139-198 13-62 (74)
26 2ecj_A Tripartite motif-contai 98.5 1.3E-07 4.3E-12 67.7 4.6 44 139-190 13-56 (58)
27 3lrq_A E3 ubiquitin-protein li 98.5 1.5E-07 5.2E-12 75.6 5.4 52 141-204 22-74 (100)
28 3ng2_A RNF4, snurf, ring finge 98.4 4.1E-08 1.4E-12 73.5 1.5 54 139-203 8-66 (71)
29 2ecm_A Ring finger and CHY zin 98.4 1.4E-07 4.7E-12 66.8 4.2 49 140-199 4-54 (55)
30 2ea6_A Ring finger protein 4; 98.4 1.3E-07 4.5E-12 70.1 4.0 51 138-199 12-67 (69)
31 2xeu_A Ring finger protein 4; 98.4 4.5E-08 1.5E-12 71.5 1.1 54 140-204 2-60 (64)
32 2y43_A E3 ubiquitin-protein li 98.4 1.2E-07 3.9E-12 76.1 3.7 48 141-201 22-70 (99)
33 2kiz_A E3 ubiquitin-protein li 98.4 3.9E-07 1.3E-11 67.7 6.1 51 139-200 12-63 (69)
34 3l11_A E3 ubiquitin-protein li 98.4 7.3E-08 2.5E-12 79.5 2.0 50 139-200 13-62 (115)
35 3fl2_A E3 ubiquitin-protein li 98.4 2E-07 6.7E-12 77.9 4.5 48 141-200 52-99 (124)
36 4ayc_A E3 ubiquitin-protein li 98.4 1.2E-07 4.2E-12 80.8 3.3 46 141-199 53-98 (138)
37 1g25_A CDK-activating kinase a 98.4 8.9E-08 3.1E-12 70.4 1.8 54 141-204 3-59 (65)
38 2kr4_A Ubiquitin conjugation f 98.3 1.3E-06 4.6E-11 67.8 7.6 50 139-201 12-61 (85)
39 2ep4_A Ring finger protein 24; 98.3 7.9E-07 2.7E-11 67.0 5.9 50 139-199 13-63 (74)
40 2ect_A Ring finger protein 126 98.3 4.3E-07 1.5E-11 69.2 4.3 53 139-202 13-66 (78)
41 1z6u_A NP95-like ring finger p 98.3 4E-07 1.4E-11 78.8 3.5 49 141-201 78-126 (150)
42 2ckl_A Polycomb group ring fin 98.3 5.2E-07 1.8E-11 73.4 3.8 48 140-200 14-62 (108)
43 2kre_A Ubiquitin conjugation f 98.2 4.4E-07 1.5E-11 72.9 2.4 50 139-201 27-76 (100)
44 2l0b_A E3 ubiquitin-protein li 98.2 7.8E-07 2.7E-11 70.1 3.8 51 139-200 38-89 (91)
45 2c2l_A CHIP, carboxy terminus 98.2 1.5E-06 5.1E-11 82.5 6.4 52 138-201 205-256 (281)
46 1iym_A EL5; ring-H2 finger, ub 98.2 6.4E-07 2.2E-11 63.3 2.8 49 140-199 4-54 (55)
47 1chc_A Equine herpes virus-1 r 98.2 1E-06 3.6E-11 65.1 4.0 47 141-199 5-51 (68)
48 1bor_A Transcription factor PM 98.2 3.3E-07 1.1E-11 65.4 0.7 45 139-199 4-48 (56)
49 1x4j_A Ring finger protein 38; 98.2 1E-06 3.6E-11 66.6 3.5 51 139-200 21-72 (75)
50 1wgm_A Ubiquitin conjugation f 98.1 2.5E-06 8.7E-11 68.1 5.5 50 139-201 20-70 (98)
51 1v87_A Deltex protein 2; ring- 98.1 2.5E-06 8.7E-11 69.9 5.2 54 141-200 25-94 (114)
52 1jm7_B BARD1, BRCA1-associated 98.1 3.8E-07 1.3E-11 75.4 0.2 45 141-200 22-67 (117)
53 3htk_C E3 SUMO-protein ligase 98.1 9.3E-07 3.2E-11 82.2 2.6 53 140-201 180-233 (267)
54 2ecn_A Ring finger protein 141 98.1 5.2E-07 1.8E-11 67.3 0.3 47 139-199 13-59 (70)
55 2ckl_B Ubiquitin ligase protei 98.0 3.5E-06 1.2E-10 73.8 4.0 48 140-199 53-101 (165)
56 2f42_A STIP1 homology and U-bo 97.9 1.1E-05 3.8E-10 71.4 5.7 51 139-201 104-154 (179)
57 4ic3_A E3 ubiquitin-protein li 97.9 5E-06 1.7E-10 62.7 2.4 43 141-200 24-67 (74)
58 2ecl_A Ring-box protein 2; RNF 97.9 1.8E-05 6.1E-10 60.8 5.4 51 139-200 13-76 (81)
59 2ecg_A Baculoviral IAP repeat- 97.8 1.1E-05 3.6E-10 61.0 2.9 43 141-200 25-68 (75)
60 2vje_A E3 ubiquitin-protein li 97.7 1.6E-05 5.6E-10 58.1 2.8 48 139-199 6-56 (64)
61 4ap4_A E3 ubiquitin ligase RNF 97.7 9.9E-06 3.4E-10 67.8 1.6 56 138-204 69-129 (133)
62 2ct7_A Ring finger protein 31; 97.6 1.9E-05 6.5E-10 61.4 2.3 48 300-353 26-74 (86)
63 2vje_B MDM4 protein; proto-onc 97.6 2.6E-05 8.9E-10 56.8 2.8 47 140-199 6-55 (63)
64 2ea5_A Cell growth regulator w 97.6 8.4E-05 2.9E-09 55.0 5.2 46 138-200 12-58 (68)
65 3dpl_R Ring-box protein 1; ubi 97.6 5.8E-05 2E-09 61.0 4.3 49 140-199 36-100 (106)
66 2y1n_A E3 ubiquitin-protein li 97.5 5.2E-05 1.8E-09 74.8 4.7 47 142-200 333-379 (389)
67 2yho_A E3 ubiquitin-protein li 97.5 2.6E-05 9E-10 59.5 1.7 43 141-200 18-61 (79)
68 2d8s_A Cellular modulator of i 97.5 0.00014 4.9E-09 55.5 5.7 53 139-200 13-70 (80)
69 2jmo_A Parkin; IBR, E3 ligase, 96.9 0.00029 1E-08 53.8 2.1 40 299-338 25-70 (80)
70 4a0k_B E3 ubiquitin-protein li 96.9 0.00016 5.3E-09 59.4 0.5 49 140-199 47-111 (117)
71 3t6p_A Baculoviral IAP repeat- 96.9 0.0002 6.9E-09 70.0 1.3 42 141-199 295-337 (345)
72 2bay_A PRE-mRNA splicing facto 96.5 0.0015 5E-08 47.1 3.1 49 141-202 3-52 (61)
73 2ct0_A Non-SMC element 1 homol 96.2 0.0056 1.9E-07 45.8 4.6 50 140-199 14-63 (74)
74 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.016 5.4E-07 55.8 6.4 113 66-202 247-375 (381)
75 1v92_A NSFL1 cofactor P47; 3-h 95.5 0.023 7.7E-07 38.1 5.0 40 79-118 5-44 (46)
76 2cs3_A Protein C14ORF4, MY039 95.0 0.052 1.8E-06 40.4 6.0 52 136-191 10-63 (93)
77 2dal_A Protein KIAA0794; FAS a 94.7 0.056 1.9E-06 38.8 5.4 42 78-119 14-55 (62)
78 3vk6_A E3 ubiquitin-protein li 94.5 0.026 8.9E-07 44.2 3.3 45 143-198 3-47 (101)
79 1wd2_A Ariadne-1 protein homol 93.9 0.02 6.8E-07 40.9 1.4 37 229-269 5-44 (60)
80 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.036 1.2E-06 43.7 2.7 33 141-174 3-37 (101)
81 1vyx_A ORF K3, K3RING; zinc-bi 93.2 0.12 4E-06 36.8 4.6 49 140-199 5-58 (60)
82 2dam_A ETEA protein; KIAA0887, 92.5 0.23 7.7E-06 36.2 5.4 41 79-119 18-59 (67)
83 2dzl_A Protein FAM100B; UBA-li 92.2 0.21 7.1E-06 36.3 4.8 38 81-118 19-56 (66)
84 3e21_A HFAF1, FAS-associated f 91.0 0.26 8.8E-06 32.8 3.9 38 79-116 5-43 (45)
85 1wj7_A Hypothetical protein (R 90.3 0.43 1.5E-05 37.6 5.2 41 79-119 39-79 (104)
86 1g25_A CDK-activating kinase a 90.1 0.13 4.5E-06 36.7 2.0 33 255-312 24-56 (65)
87 2jrp_A Putative cytoplasmic pr 89.8 0.15 5.2E-06 38.4 2.1 51 300-353 3-58 (81)
88 3vk6_A E3 ubiquitin-protein li 88.5 0.3 1E-05 38.2 3.1 48 232-313 3-51 (101)
89 3lrq_A E3 ubiquitin-protein li 88.3 0.11 3.8E-06 40.8 0.5 35 300-340 23-57 (100)
90 3nw0_A Non-structural maintena 88.0 0.23 8E-06 45.6 2.6 95 91-201 132-230 (238)
91 2jne_A Hypothetical protein YF 87.8 0.19 6.5E-06 38.9 1.5 51 300-353 33-88 (101)
92 2ecy_A TNF receptor-associated 86.5 0.26 9.1E-06 35.2 1.6 49 229-311 14-62 (66)
93 1x4j_A Ring finger protein 38; 85.9 0.5 1.7E-05 34.6 3.0 37 252-314 38-75 (75)
94 2di0_A Activating signal coint 85.9 1.8 6.2E-05 31.6 5.8 41 78-118 12-53 (71)
95 2k4x_A 30S ribosomal protein S 84.9 0.27 9.2E-06 34.2 0.9 29 299-328 18-46 (55)
96 2ysj_A Tripartite motif-contai 84.5 0.23 7.7E-06 35.1 0.4 33 300-339 21-53 (63)
97 1pft_A TFIIB, PFTFIIBN; N-term 84.3 0.92 3.2E-05 30.6 3.5 29 299-328 5-34 (50)
98 2ckl_B Ubiquitin ligase protei 84.2 0.29 9.8E-06 42.1 1.0 34 300-339 55-88 (165)
99 1z96_A DNA-damage, UBA-domain 84.1 1.9 6.6E-05 27.3 4.8 35 80-115 5-39 (40)
100 3j20_Y 30S ribosomal protein S 83.4 0.49 1.7E-05 32.2 1.7 29 299-328 19-47 (50)
101 2djb_A Polycomb group ring fin 82.7 0.34 1.2E-05 35.3 0.8 34 300-339 16-49 (72)
102 1bor_A Transcription factor PM 82.4 0.78 2.7E-05 31.6 2.5 27 256-311 23-49 (56)
103 1vq8_Z 50S ribosomal protein L 82.0 0.55 1.9E-05 35.6 1.7 35 299-337 27-61 (83)
104 2ysl_A Tripartite motif-contai 81.9 0.53 1.8E-05 34.1 1.6 32 300-338 21-52 (73)
105 2ea6_A Ring finger protein 4; 81.8 0.88 3E-05 32.3 2.8 32 254-311 37-68 (69)
106 2jr6_A UPF0434 protein NMA0874 81.3 0.89 3.1E-05 33.0 2.6 29 299-328 8-36 (68)
107 1t1h_A Gspef-atpub14, armadill 81.2 0.51 1.7E-05 34.8 1.3 33 300-339 9-41 (78)
108 2ecw_A Tripartite motif-contai 81.1 0.44 1.5E-05 35.5 0.9 33 300-339 20-52 (85)
109 2ckl_A Polycomb group ring fin 80.7 0.43 1.5E-05 37.8 0.8 35 300-340 16-50 (108)
110 2ct2_A Tripartite motif protei 80.6 0.76 2.6E-05 34.5 2.1 54 230-311 15-68 (88)
111 4ayc_A E3 ubiquitin-protein li 80.1 0.6 2E-05 38.8 1.5 34 300-340 54-87 (138)
112 2yur_A Retinoblastoma-binding 79.8 0.51 1.7E-05 34.6 0.8 34 300-339 16-49 (74)
113 3bq3_A Defective in cullin ned 78.2 2.1 7.1E-05 39.9 4.7 44 77-120 13-56 (270)
114 1chc_A Equine herpes virus-1 r 78.2 0.74 2.5E-05 32.8 1.3 34 299-338 5-38 (68)
115 2y43_A E3 ubiquitin-protein li 78.2 0.54 1.8E-05 36.5 0.5 35 300-340 23-57 (99)
116 1jm7_A BRCA1, breast cancer ty 77.8 0.61 2.1E-05 36.9 0.8 34 300-340 22-55 (112)
117 3l11_A E3 ubiquitin-protein li 77.8 1 3.5E-05 35.9 2.2 34 300-340 16-49 (115)
118 3fl2_A E3 ubiquitin-protein li 77.5 0.62 2.1E-05 37.8 0.8 32 300-338 53-84 (124)
119 2jun_A Midline-1; B-BOX, TRIM, 77.4 0.097 3.3E-06 41.1 -4.1 70 250-334 16-87 (101)
120 2egp_A Tripartite motif-contai 76.8 0.9 3.1E-05 33.3 1.4 33 300-339 13-45 (79)
121 2ecm_A Ring finger and CHY zin 75.8 0.92 3.1E-05 30.7 1.2 37 300-339 6-42 (55)
122 2d8t_A Dactylidin, ring finger 75.8 0.73 2.5E-05 33.3 0.7 34 300-340 16-49 (71)
123 2ecj_A Tripartite motif-contai 74.5 0.61 2.1E-05 32.0 -0.1 32 300-338 16-47 (58)
124 1jm7_B BARD1, BRCA1-associated 74.4 1.3 4.4E-05 35.6 1.9 33 300-338 23-55 (117)
125 2kiz_A E3 ubiquitin-protein li 74.3 0.88 3E-05 32.6 0.8 37 300-340 15-51 (69)
126 1e4u_A Transcriptional repress 73.9 1.1 3.8E-05 33.4 1.2 35 300-337 12-46 (78)
127 1iym_A EL5; ring-H2 finger, ub 73.7 1.4 4.7E-05 29.8 1.6 37 300-339 6-42 (55)
128 2csy_A Zinc finger protein 183 73.1 0.86 2.9E-05 33.8 0.5 33 300-339 16-48 (81)
129 2jp7_A MRNA export factor MEX6 72.8 8.2 0.00028 26.8 5.4 41 77-117 4-44 (57)
130 1z6u_A NP95-like ring finger p 71.3 1.1 3.7E-05 37.9 0.8 34 300-340 79-112 (150)
131 2ecv_A Tripartite motif-contai 71.2 1.1 3.7E-05 33.3 0.6 32 300-338 20-51 (85)
132 2g3q_A Protein YBL047C; endocy 71.0 7.6 0.00026 25.0 4.7 36 81-117 6-41 (43)
133 1v87_A Deltex protein 2; ring- 70.4 1.7 6E-05 34.4 1.8 37 256-313 60-96 (114)
134 1ify_A HHR23A, UV excision rep 70.4 9.7 0.00033 25.4 5.3 37 80-117 9-45 (49)
135 2d8v_A Zinc finger FYVE domain 70.3 2.7 9.2E-05 30.1 2.4 33 139-174 6-39 (67)
136 3ng2_A RNF4, snurf, ring finge 70.3 0.82 2.8E-05 32.8 -0.2 39 300-339 11-50 (71)
137 3ztg_A E3 ubiquitin-protein li 70.0 0.85 2.9E-05 34.7 -0.2 33 300-338 14-46 (92)
138 3knv_A TNF receptor-associated 69.8 1.1 3.8E-05 37.5 0.4 33 300-339 32-64 (141)
139 2ecn_A Ring finger protein 141 69.7 1.2 4.2E-05 31.8 0.7 31 300-338 16-46 (70)
140 1oai_A Nuclear RNA export fact 69.7 11 0.00039 26.3 5.7 39 78-116 6-44 (59)
141 4ic3_A E3 ubiquitin-protein li 69.6 1.3 4.4E-05 32.4 0.8 26 256-311 41-67 (74)
142 2ect_A Ring finger protein 126 68.3 2 6.9E-05 31.4 1.6 36 300-339 16-51 (78)
143 1vg5_A RSGI RUH-014, rhomboid 67.8 8.2 0.00028 28.3 4.8 36 82-118 32-67 (73)
144 1weo_A Cellulose synthase, cat 67.7 11 0.00039 28.5 5.5 50 139-198 14-68 (93)
145 3h0g_I DNA-directed RNA polyme 67.7 3.6 0.00012 32.9 3.1 29 299-328 4-36 (113)
146 2y1n_A E3 ubiquitin-protein li 67.4 5.9 0.0002 38.8 5.1 51 227-311 329-379 (389)
147 2hf1_A Tetraacyldisaccharide-1 67.3 3.5 0.00012 29.9 2.6 28 300-328 9-36 (68)
148 2js4_A UPF0434 protein BB2007; 67.1 3.8 0.00013 29.9 2.8 29 299-328 8-36 (70)
149 2xeu_A Ring finger protein 4; 66.8 1.2 3.9E-05 31.1 -0.0 39 300-339 4-43 (64)
150 3hct_A TNF receptor-associated 65.6 1.5 5.1E-05 35.2 0.4 33 300-339 19-51 (118)
151 2pk7_A Uncharacterized protein 65.3 4.2 0.00014 29.5 2.8 29 299-328 8-36 (69)
152 1wfl_A Zinc finger protein 216 64.7 2.5 8.6E-05 31.0 1.4 27 300-332 26-52 (74)
153 2c2l_A CHIP, carboxy terminus 64.7 4.7 0.00016 37.0 3.8 29 229-266 207-235 (281)
154 1rmd_A RAG1; V(D)J recombinati 64.5 1.6 5.6E-05 34.8 0.4 33 300-339 24-56 (116)
155 1wfh_A Zinc finger (AN1-like) 63.9 3.2 0.00011 29.6 1.8 28 299-332 15-42 (64)
156 3qt1_I DNA-directed RNA polyme 63.2 3.2 0.00011 34.3 2.0 31 297-328 22-56 (133)
157 2l0b_A E3 ubiquitin-protein li 61.7 1.4 4.7E-05 33.7 -0.5 36 300-339 41-76 (91)
158 2dak_A Ubiquitin carboxyl-term 60.9 15 0.0005 25.9 4.9 37 82-119 12-48 (63)
159 2ep4_A Ring finger protein 24; 60.2 2.2 7.5E-05 30.8 0.4 36 300-339 16-51 (74)
160 2jny_A Uncharacterized BCR; st 60.2 5.7 0.0002 28.6 2.6 29 299-328 10-38 (67)
161 1wg2_A Zinc finger (AN1-like) 59.5 3.7 0.00013 29.3 1.5 28 299-332 15-42 (64)
162 2csv_A Tripartite motif protei 57.2 4.9 0.00017 29.0 1.9 32 300-341 19-50 (72)
163 2jrp_A Putative cytoplasmic pr 56.9 4.1 0.00014 30.5 1.4 29 301-338 33-63 (81)
164 2knz_A Ubiquilin-4; cytoplasm, 56.1 25 0.00087 23.7 5.3 40 78-118 10-50 (53)
165 3hcs_A TNF receptor-associated 55.6 2.9 9.8E-05 35.8 0.4 32 300-338 19-50 (170)
166 1wji_A Tudor domain containing 54.2 21 0.00072 25.2 4.8 36 82-118 12-47 (63)
167 1veg_A NEDD8 ultimate buster-1 53.8 23 0.0008 26.5 5.2 35 83-118 33-67 (83)
168 1twf_I B12.6, DNA-directed RNA 53.6 5.5 0.00019 32.3 1.8 29 299-328 4-36 (122)
169 2yvr_A Transcription intermedi 53.4 5.9 0.0002 26.3 1.7 32 300-341 7-39 (50)
170 1wfp_A Zinc finger (AN1-like) 52.9 4.1 0.00014 29.9 0.8 28 299-332 25-52 (74)
171 1z60_A TFIIH basal transcripti 52.4 3.9 0.00013 28.7 0.6 36 231-273 16-52 (59)
172 1weo_A Cellulose synthase, cat 52.4 16 0.00056 27.7 4.1 58 231-316 17-75 (93)
173 1wff_A Riken cDNA 2810002D23 p 52.3 5.7 0.0002 30.0 1.6 29 299-332 25-53 (85)
174 2yw8_A RUN and FYVE domain-con 52.1 6.8 0.00023 29.3 2.0 41 292-335 11-52 (82)
175 2jy5_A Ubiquilin-1; UBA, alter 51.6 22 0.00075 24.0 4.4 37 81-118 14-51 (52)
176 1odh_A MGCM1; transcription fa 49.7 14 0.00048 31.2 3.7 36 270-326 96-131 (174)
177 3m7n_A Putative uncharacterize 49.5 8.3 0.00028 33.4 2.4 25 300-327 141-165 (179)
178 2yu4_A E3 SUMO-protein ligase 49.3 3.3 0.00011 31.7 -0.2 33 300-338 8-40 (94)
179 1fre_A Nuclear factor XNF7; zi 49.2 7.7 0.00026 24.6 1.7 32 300-340 4-35 (42)
180 1dl6_A Transcription factor II 48.7 12 0.0004 26.1 2.6 26 300-326 12-38 (58)
181 2ecl_A Ring-box protein 2; RNF 48.4 4.5 0.00015 30.0 0.5 18 323-340 47-64 (81)
182 2did_A Tripartite motif protei 48.3 7.4 0.00025 26.2 1.5 32 300-340 9-40 (53)
183 3t7l_A Zinc finger FYVE domain 47.4 14 0.00048 28.1 3.2 38 136-173 15-54 (90)
184 3u5c_f 40S ribosomal protein S 45.7 10 0.00035 31.9 2.4 30 300-330 119-150 (152)
185 2xzm_9 RPS31E; ribosome, trans 44.4 11 0.00038 33.0 2.4 29 299-329 113-142 (189)
186 4a0k_B E3 ubiquitin-protein li 43.3 5 0.00017 32.3 0.0 25 313-339 75-99 (117)
187 2yrg_A Tripartite motif-contai 43.2 9.6 0.00033 26.4 1.5 32 300-340 15-46 (59)
188 1z2q_A LM5-1; membrane protein 42.8 24 0.00081 26.3 3.8 38 136-173 16-55 (84)
189 2ko5_A Ring finger protein Z; 42.8 8.2 0.00028 29.6 1.1 48 140-202 27-75 (99)
190 1ee8_A MUTM (FPG) protein; bet 42.5 11 0.00038 34.9 2.2 26 300-326 236-263 (266)
191 2xzf_A Formamidopyrimidine-DNA 42.4 9.7 0.00033 35.3 1.8 25 300-325 243-269 (271)
192 1wr1_B Ubiquitin-like protein 42.1 43 0.0015 23.1 4.7 40 78-118 16-56 (58)
193 2f42_A STIP1 homology and U-bo 41.6 23 0.00077 30.7 3.9 30 228-266 104-133 (179)
194 1joc_A EEA1, early endosomal a 41.6 17 0.00059 29.4 3.0 40 293-335 62-102 (125)
195 1wii_A Hypothetical UPF0222 pr 41.5 12 0.00043 28.2 2.0 28 300-328 24-57 (85)
196 3u6p_A Formamidopyrimidine-DNA 41.4 10 0.00034 35.3 1.8 25 300-325 246-272 (273)
197 2akl_A PHNA-like protein PA012 41.1 15 0.00053 29.9 2.5 30 297-328 25-54 (138)
198 1k82_A Formamidopyrimidine-DNA 40.9 11 0.00036 35.0 1.8 25 300-325 241-267 (268)
199 1twf_L ABC10-alpha, DNA-direct 40.9 10 0.00034 27.6 1.3 25 300-326 29-53 (70)
200 3ddt_A E3 ubiquitin-protein li 40.6 10 0.00035 24.8 1.3 33 300-341 7-40 (48)
201 1k3x_A Endonuclease VIII; hydr 40.1 11 0.00037 34.8 1.8 25 300-325 235-261 (262)
202 1x4v_A Hypothetical protein LO 39.9 12 0.0004 26.6 1.5 31 230-267 12-43 (63)
203 2egm_A Tripartite motif-contai 39.8 11 0.00038 25.9 1.4 27 300-334 19-45 (57)
204 3h0g_I DNA-directed RNA polyme 39.8 17 0.00059 28.8 2.7 31 229-261 3-36 (113)
205 1wiv_A UBP14, ubiquitin-specif 39.6 49 0.0017 24.0 5.0 29 90-118 39-67 (73)
206 2yw8_A RUN and FYVE domain-con 39.6 17 0.00058 27.0 2.5 36 137-172 15-52 (82)
207 2d8u_A Ubiquitin ligase TRIM63 39.0 13 0.00044 25.9 1.7 32 300-340 9-41 (64)
208 1y02_A CARP2, FYVE-ring finger 38.7 13 0.00043 30.1 1.7 39 136-174 14-54 (120)
209 3t6p_A Baculoviral IAP repeat- 38.4 11 0.00039 36.2 1.7 26 256-311 312-338 (345)
210 2bwb_A Ubiquitin-like protein 38.2 62 0.0021 21.1 4.8 39 78-117 6-45 (46)
211 2dah_A Ubiquilin-3; UBA domain 37.8 26 0.00087 23.9 2.9 36 82-118 12-48 (54)
212 3u5c_f 40S ribosomal protein S 37.5 18 0.00063 30.4 2.6 33 230-264 118-151 (152)
213 2dkl_A Trinucleotide repeat co 37.1 59 0.002 24.4 5.1 38 80-118 22-59 (85)
214 1joc_A EEA1, early endosomal a 36.8 15 0.00052 29.7 2.0 37 137-173 65-103 (125)
215 2lli_A Protein AIR2; RNA surve 36.2 26 0.0009 28.0 3.3 53 260-335 5-73 (124)
216 2dai_A Ubadc1, ubiquitin assoc 36.1 55 0.0019 24.4 4.8 36 82-118 32-67 (83)
217 3dpl_R Ring-box protein 1; ubi 35.8 9.4 0.00032 30.0 0.5 25 313-339 64-88 (106)
218 1twf_I B12.6, DNA-directed RNA 35.6 18 0.00062 29.2 2.2 31 229-261 3-36 (122)
219 1wfk_A Zinc finger, FYVE domai 35.4 20 0.00069 27.1 2.3 34 299-335 9-42 (88)
220 2a20_A Regulating synaptic mem 35.3 17 0.00059 25.3 1.7 38 300-340 10-47 (62)
221 2lbm_A Transcriptional regulat 34.8 1.1E+02 0.0037 25.3 6.9 50 139-197 61-117 (142)
222 2kpi_A Uncharacterized protein 34.7 28 0.00095 24.0 2.7 27 300-328 11-38 (56)
223 3htk_C E3 SUMO-protein ligase 34.4 14 0.00048 34.1 1.5 33 300-338 182-214 (267)
224 3v2d_5 50S ribosomal protein L 33.3 14 0.00049 25.9 1.1 22 298-325 29-50 (60)
225 1x4u_A Zinc finger, FYVE domai 32.6 24 0.00082 26.3 2.3 36 137-172 10-47 (84)
226 1dvp_A HRS, hepatocyte growth 32.5 22 0.00076 31.6 2.5 33 300-335 162-194 (220)
227 2yre_A F-box only protein 30; 32.4 6.2 0.00021 30.8 -1.0 41 162-203 13-53 (100)
228 1ufz_A Hypothetical protein BA 32.0 1.1E+02 0.0039 22.7 5.8 49 70-119 26-76 (83)
229 1wfe_A Riken cDNA 2310008M20 p 31.7 21 0.00073 26.9 1.9 32 229-267 24-56 (86)
230 1qxf_A GR2, 30S ribosomal prot 31.6 43 0.0015 23.8 3.3 30 231-263 8-38 (66)
231 3a1b_A DNA (cytosine-5)-methyl 31.6 27 0.00091 29.6 2.7 36 138-176 76-114 (159)
232 2hu9_A MERP, mercuric transpor 31.1 27 0.00091 28.6 2.5 43 187-242 2-47 (130)
233 3h0g_L DNA-directed RNA polyme 31.0 20 0.00067 25.4 1.5 27 300-328 22-48 (63)
234 3k9o_A Ubiquitin-conjugating e 31.0 65 0.0022 28.1 5.3 37 80-117 164-200 (201)
235 2o35_A Hypothetical protein DU 30.9 21 0.00073 27.6 1.7 17 164-180 42-58 (105)
236 4gew_A 5'-tyrosyl-DNA phosphod 30.9 36 0.0012 32.6 3.9 37 82-118 48-84 (362)
237 3qt1_I DNA-directed RNA polyme 30.8 23 0.00078 29.1 2.1 33 227-261 21-56 (133)
238 3fyb_A Protein of unknown func 30.6 22 0.00074 27.5 1.7 17 164-180 41-57 (104)
239 1dv0_A DNA repair protein HHR2 30.0 31 0.0011 22.7 2.3 36 82-118 7-42 (47)
240 2dja_A Midline-2; tripartite m 30.0 21 0.00071 26.3 1.6 32 300-340 19-51 (84)
241 2zjr_Z 50S ribosomal protein L 29.4 21 0.00071 25.0 1.4 22 299-326 30-51 (60)
242 3nyb_B Protein AIR2; polya RNA 29.4 25 0.00085 26.3 1.9 61 259-352 5-65 (83)
243 3e46_A Ubiquitin-conjugating e 28.9 74 0.0025 29.0 5.4 36 81-117 217-252 (253)
244 2gmg_A Hypothetical protein PF 28.9 32 0.0011 27.0 2.5 9 253-261 68-77 (105)
245 1vej_A Riken cDNA 4931431F19; 28.6 1.2E+02 0.004 22.1 5.4 37 81-118 31-68 (74)
246 2l2d_A OTU domain-containing p 28.6 1.3E+02 0.0045 21.1 5.3 37 79-115 17-53 (73)
247 2cpw_A CBL-interacting protein 27.7 96 0.0033 21.7 4.7 35 82-117 22-57 (64)
248 2bl6_A Nucleocapsid protein P1 27.5 33 0.0011 21.1 2.0 16 261-276 2-17 (37)
249 1z67_A Hypothetical protein S4 27.1 61 0.0021 26.6 4.0 37 68-104 62-99 (135)
250 3mjh_B Early endosome antigen 27.0 18 0.00063 22.2 0.6 14 139-152 3-16 (34)
251 3iz6_X 40S ribosomal protein S 26.9 44 0.0015 25.1 2.8 33 231-266 37-70 (86)
252 3lqh_A Histone-lysine N-methyl 26.8 21 0.00071 31.1 1.2 75 142-219 3-84 (183)
253 2xzm_6 RPS27E; ribosome, trans 26.5 55 0.0019 24.3 3.2 30 231-263 33-63 (81)
254 3j20_W 30S ribosomal protein S 26.4 59 0.002 22.9 3.2 30 231-263 16-46 (63)
255 3zyq_A Hepatocyte growth facto 26.3 32 0.0011 30.8 2.4 34 300-336 165-198 (226)
256 2zet_C Melanophilin; complex, 26.2 28 0.00095 29.3 1.9 31 140-170 67-100 (153)
257 1vk6_A NADH pyrophosphatase; 1 25.7 48 0.0017 30.4 3.6 30 297-327 105-134 (269)
258 1vfy_A Phosphatidylinositol-3- 25.7 35 0.0012 24.6 2.1 31 142-172 12-44 (73)
259 2fiy_A Protein FDHE homolog; F 25.7 62 0.0021 30.5 4.4 19 71-89 24-42 (309)
260 2kre_A Ubiquitin conjugation f 25.4 18 0.00062 27.9 0.5 32 300-338 30-61 (100)
261 1wys_A Riken cDNA 2310008M20 p 24.4 55 0.0019 23.9 3.0 30 231-267 15-45 (75)
262 2a51_A Nucleocapsid protein; s 24.1 24 0.00081 22.0 0.8 16 261-276 2-17 (39)
263 1zbd_B Rabphilin-3A; G protein 23.9 29 0.00099 28.5 1.5 30 140-169 54-86 (134)
264 1tr8_A Conserved protein (MTH1 23.8 1.1E+02 0.0037 23.7 4.7 31 81-111 67-97 (102)
265 2zet_C Melanophilin; complex, 23.7 92 0.0031 26.1 4.6 35 298-334 67-101 (153)
266 1nui_A DNA primase/helicase; z 23.6 39 0.0013 30.6 2.5 23 300-326 15-41 (255)
267 3j21_g 50S ribosomal protein L 23.5 22 0.00075 24.0 0.6 24 299-327 14-37 (51)
268 3jyw_9 60S ribosomal protein L 23.2 41 0.0014 24.4 2.0 29 299-328 26-54 (72)
269 1k81_A EIF-2-beta, probable tr 23.0 44 0.0015 20.6 1.9 26 301-327 2-30 (36)
270 3zyq_A Hepatocyte growth facto 22.5 1.5E+02 0.0052 26.2 6.2 33 141-173 164-198 (226)
271 3j21_i 50S ribosomal protein L 22.4 45 0.0015 24.9 2.1 29 299-328 35-63 (83)
272 2d8x_A Protein pinch; LIM doma 22.1 46 0.0016 23.2 2.2 38 140-178 30-67 (70)
273 2dag_A Ubiquitin carboxyl-term 21.1 1.4E+02 0.0047 21.6 4.6 36 82-118 12-48 (74)
274 2gvi_A Conserved hypothetical 21.1 28 0.00097 30.7 0.9 33 139-172 170-202 (204)
275 1y02_A CARP2, FYVE-ring finger 20.7 31 0.0011 27.8 1.0 33 300-335 20-52 (120)
276 4esj_A Type-2 restriction enzy 20.6 62 0.0021 29.2 3.0 22 289-311 25-47 (257)
277 2ekk_A UBA domain from E3 ubiq 20.6 1.3E+02 0.0043 19.4 3.9 34 82-117 12-45 (47)
278 4esj_A Type-2 restriction enzy 20.5 77 0.0026 28.6 3.6 45 217-266 24-71 (257)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.84 E-value=9.8e-23 Score=148.20 Aligned_cols=57 Identities=58% Similarity=1.443 Sum_probs=53.1
Q ss_pred HHHhcCCCCCCCCcceeecCCCCceEecCC--CccccccccccccccCCCCCCCcccCCchhh
Q 014105 294 WILANSKPCPRCKRPIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYET 354 (430)
Q Consensus 294 ~i~~~tk~CP~C~~~IeK~~GCnhm~C~~~--C~~~FCw~C~~~~~~h~~~~g~~~~C~~~~~ 354 (430)
||++++|+||+|+++|||++|||||+|+ . |+++|||+|+++|+.|+. .+|.||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 6788999999999999999999999998 7 999999999999999985 6899999963
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.65 E-value=9.9e-17 Score=128.58 Aligned_cols=88 Identities=20% Similarity=0.535 Sum_probs=76.4
Q ss_pred CCccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCC--chhhHHHhhcChHHHHHH
Q 014105 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA--VGQDMIYLLSSDEDKVKY 215 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~--l~~~~i~~ll~~e~~~ky 215 (430)
+..++|+||++.++...++.+ +|||.||++||+.||..+|.+|. ..+++||.++|+.. +++..++.+++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 457899999999876666665 69999999999999999998774 34799998889999 999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 014105 216 NRYFIRSYVEDN 227 (430)
Q Consensus 216 ~~~~~~~~v~~~ 227 (430)
.+++++.++.++
T Consensus 82 ~~~~~~~~v~~~ 93 (94)
T 1wim_A 82 KKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHSSCSSC
T ss_pred HHHHHHhhhccC
Confidence 999998887653
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.37 E-value=9.6e-15 Score=114.69 Aligned_cols=78 Identities=22% Similarity=0.603 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceecCCCCCCceEEeecCCCCceEEe-cCCCccccccCCcC---CCCCCchhHHHHHHh
Q 014105 209 DEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEA---HRPVDCDTVAKWVLK 284 (430)
Q Consensus 209 ~e~~~ky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~---H~~~~C~~~~~~~~~ 284 (430)
++++++|.+++++.+|..+++++||| +|++++...+ ....|.| .|++.||+.|+.+| |.|++|.++++|+.+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 45667888888889999999999999 8999887653 3567999 79999999999999 999999999999998
Q ss_pred hhhhHH
Q 014105 285 NSAESE 290 (430)
Q Consensus 285 ~~~e~~ 290 (430)
+..+++
T Consensus 80 n~~~~~ 85 (86)
T 2ct7_A 80 NSGPSS 85 (86)
T ss_dssp HTCSSC
T ss_pred Cccccc
Confidence 876653
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=9.1e-13 Score=111.71 Aligned_cols=117 Identities=25% Similarity=0.663 Sum_probs=79.5
Q ss_pred CCccccccccccccC-----CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHhhcChHHHH
Q 014105 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKV 213 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~~ 213 (430)
...++|+||++.+.. ..++.++|||.||..||..|+.. ...|| .|+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~l~i----- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPIYI----- 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCT--TTCCBCTTTCEEECBC-----
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCC--CCCCcCcccccccccc-----
Confidence 346889999998731 22388899999999999999974 23799 8999887655443321
Q ss_pred HHHHHHHHHHHhcCCCceecCCCCCCceEEeecCCCCceEEecCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHH
Q 014105 214 KYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMN 293 (430)
Q Consensus 214 ky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~ 293 (430)
+.....||. |...+..........+...||+.||..|... |+
T Consensus 69 -------------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~----------- 110 (133)
T 4ap4_A 69 -------------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SL----------- 110 (133)
T ss_dssp -------------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HH-----------
T ss_pred -------------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHH------------HH-----------
Confidence 234457875 8654432111122335569999999999532 32
Q ss_pred HHHhcCCCCCCCCcceeec
Q 014105 294 WILANSKPCPRCKRPIEKN 312 (430)
Q Consensus 294 ~i~~~tk~CP~C~~~IeK~ 312 (430)
.. .+.||.|+..|.++
T Consensus 111 --~~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 --KN-ANTCPTCRKKINHK 126 (133)
T ss_dssp --HH-CSBCTTTCCBCCGG
T ss_pred --Hc-CCCCCCCCCcCChh
Confidence 21 37999999999764
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.16 E-value=2.6e-13 Score=104.86 Aligned_cols=68 Identities=28% Similarity=0.616 Sum_probs=59.4
Q ss_pred hcChHHHHHHHHHHHHHHHhcCCCceecCCCCCCceEEeecCCCCceEEe------cCCCccccccCCcCCCCCCchh
Q 014105 206 LSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC------RCSYSFCWNCTEEAHRPVDCDT 277 (430)
Q Consensus 206 ll~~e~~~ky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C~~~~H~~~~C~~ 277 (430)
+|+++++++|++++++++|..+. ++|||+|+|++++...+ ....|.| .|++.||+.|+.+||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 46677889999999999998886 99999999999987753 4567899 6999999999999999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78 E-value=1.3e-09 Score=96.56 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=59.3
Q ss_pred CCCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHhhcChHHHHHHHH
Q 014105 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNR 217 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~~ky~~ 217 (430)
....+.|+||++.+ ..++.++|||.||..||..++... ..+|| .|+..+....+ .....+.
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~~~---- 75 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFAK---- 75 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHHH----
T ss_pred CCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC--------CCCCC--CCccCcchhhh---hhhHHHH----
Confidence 45678999999987 677889999999999999999763 23899 89988866432 2211111
Q ss_pred HHHHHHHhcCCCceecCCCCCCceEEee
Q 014105 218 YFIRSYVEDNRKTKWCPAPGCDYAVDFV 245 (430)
Q Consensus 218 ~~~~~~v~~~~~~~~CP~p~C~~~i~~~ 245 (430)
..+. .-.+.||+.+|+..+...
T Consensus 76 ----~~i~--~l~v~C~n~GC~~~~~~~ 97 (170)
T 3hcs_A 76 ----REIL--SLMVKCPNEGCLHKMELR 97 (170)
T ss_dssp ----HHHH--TSEEECCSTTCCCEEEGG
T ss_pred ----HHHh--hcccCCCCCCCCceecHh
Confidence 1122 245799999999877543
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.9e-08 Score=77.58 Aligned_cols=60 Identities=27% Similarity=0.665 Sum_probs=46.8
Q ss_pred CCccccccccccccCCC--eeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHhh
Q 014105 139 GEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL 206 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~l 206 (430)
...++|+||++.+.... ++.++|||.||..|+..|+.... ..+.|| .|+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCT--TTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCC--CCCCcccchhHHHH
Confidence 45688999999885432 78889999999999999998741 157899 89998866555443
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2e-08 Score=77.80 Aligned_cols=56 Identities=34% Similarity=0.734 Sum_probs=46.2
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ ..++.++|||.||..|+..|+..+...+. .+.|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG---ESSCP--VCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS---CCCCT--TTCCSSCSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC---CCcCC--CCCCccCHH
Confidence 4578999999987 56777899999999999999998765543 67999 799988654
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=2.2e-08 Score=73.96 Aligned_cols=52 Identities=25% Similarity=0.639 Sum_probs=42.0
Q ss_pred CCCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
....+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLSS----S----SPKCT--ACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHTT----S----SCCCT--TTCCCCCTT
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHHh----C----cCCCC--CCCcCCChh
Confidence 34578999999987 56677899999999999999961 1 45799 899887654
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.64 E-value=3.1e-08 Score=76.73 Aligned_cols=56 Identities=32% Similarity=0.624 Sum_probs=45.6
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ ..++.++|||.||..|+..|+......+. ...|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDG---KGNCP--VCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTS---CBCCT--TTCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCC---CCCCC--CCCCcCCHH
Confidence 4578999999987 56778899999999999999988653332 67899 899988654
No 11
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.64 E-value=2.9e-08 Score=82.02 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=57.1
Q ss_pred ccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHhhcChHHHHHHHHHHH
Q 014105 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFI 220 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~~ky~~~~~ 220 (430)
.+.|+||++.+ .+++.++|||.||..|+..|+... ...|| .|+..+....+...+ ..+ .+
T Consensus 23 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~~~~-~~l----~~--- 82 (116)
T 1rmd_A 23 SISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM--------GSYCP--SCRYPCFPTDLESPV-KSF----LN--- 82 (116)
T ss_dssp HTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCBCCC-HHH----HH---
T ss_pred CCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC--------cCcCC--CCCCCCCHhhccccH-HHH----HH---
Confidence 57899999987 678889999999999999999862 24799 899988765443221 111 11
Q ss_pred HHHHhcCCCceecCCCCCCceEEe
Q 014105 221 RSYVEDNRKTKWCPAPGCDYAVDF 244 (430)
Q Consensus 221 ~~~v~~~~~~~~CP~p~C~~~i~~ 244 (430)
.+. .-.++||+.+|+..+..
T Consensus 83 --~i~--~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 83 --ILN--SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp --HHH--HCEEECCSTTCCCEEEH
T ss_pred --HHH--HhcCCCCCCCCcchhhH
Confidence 111 12468999999987654
No 12
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.62 E-value=8.7e-08 Score=79.43 Aligned_cols=83 Identities=22% Similarity=0.472 Sum_probs=59.7
Q ss_pred CCCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHhhcChHHHHHHHH
Q 014105 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNR 217 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~~ky~~ 217 (430)
....+.|+||++.+ ..++.++|||.||..|+..|+... ...|| .|+..+....+ .....+
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~l----- 74 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFA----- 74 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHH-----
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC--------CCCCC--CCCCCcCHHhc---ccCHHH-----
Confidence 35578999999887 577889999999999999999763 23799 89998866432 222211
Q ss_pred HHHHHHHhcCCCceecCCCCCCceEEee
Q 014105 218 YFIRSYVEDNRKTKWCPAPGCDYAVDFV 245 (430)
Q Consensus 218 ~~~~~~v~~~~~~~~CP~p~C~~~i~~~ 245 (430)
...+. .-.+.||+.+|+..+.+.
T Consensus 75 ---~~~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 75 ---KREIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp ---HHHHH--TSEEECSSTTCCCEEEGG
T ss_pred ---HHHHc--cceeECCCCCCCCEEeeH
Confidence 11222 245799999999887654
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.7e-08 Score=74.68 Aligned_cols=56 Identities=25% Similarity=0.539 Sum_probs=45.2
Q ss_pred CCCCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHh
Q 014105 137 PDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (430)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~ 205 (430)
+....+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+....+..
T Consensus 11 ~~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL---------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC---------SSBCS--SSCCBCCHHHHSC
T ss_pred cCCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC---------CCcCc--CcCchhCHhhccC
Confidence 345578999999987 67788899999999999998854 24799 8999987766543
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.58 E-value=1.2e-08 Score=78.11 Aligned_cols=58 Identities=33% Similarity=0.638 Sum_probs=45.6
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhH
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~ 202 (430)
...++|+||++.+ .+++.++|||.||..|+..|+......+. ....|| .|+..+....
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~--~~~~CP--~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG--GKSSCP--VCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC--CCCCCS--SSCCCCCSSG
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC--CCCcCC--CCCCcCCHhh
Confidence 4578999999987 56777899999999999999887543322 267899 8999886543
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.55 E-value=4.9e-08 Score=77.11 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=41.1
Q ss_pred CCccccccccccccCCCeeecc-CCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCc
Q 014105 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l 198 (430)
...++|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC---T----TCCCT--TTCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc---C----CCcCc--CCCCcC
Confidence 4578999999987 5788899 99999999999999752 2 36899 899886
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=3.5e-08 Score=74.30 Aligned_cols=53 Identities=32% Similarity=0.765 Sum_probs=42.6
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ .+++.++|||.||..|+..|+... + ....|| .|+..+...
T Consensus 18 ~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS---C---SCCCCS--SSCCCCCCC
T ss_pred ccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC---C---CCCCCC--CCCCcCCcc
Confidence 4578999999987 578888999999999999998631 1 157899 899887653
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1e-07 Score=69.67 Aligned_cols=44 Identities=34% Similarity=0.821 Sum_probs=36.1
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccC
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP 190 (430)
...++|+||++.+ .+++.++|||.||..|+..|+... +. ..+||
T Consensus 18 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~---~~~CP 61 (63)
T 2ysj_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---CG---FFKCP 61 (63)
T ss_dssp CCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC---SS---CCCCS
T ss_pred ccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC---CC---CCcCc
Confidence 4578999999987 567888999999999999999852 21 46898
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=6.7e-08 Score=72.69 Aligned_cols=52 Identities=29% Similarity=0.523 Sum_probs=41.5
Q ss_pred CCccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHH
Q 014105 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i 203 (430)
...+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+....+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY---------SNRCP--KCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH---------CSSCT--TTCCCCCSSCS
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc---------CCcCC--CcCcccCcccc
Confidence 4578999999987 456665 99999999999999965 24799 89998865443
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=72.91 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=41.2
Q ss_pred CCCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
....+.|+||++.+ ..++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA---------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH---------CSBCS--SSCCBCC
T ss_pred CCCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC---------CCcCC--CcCcccc
Confidence 34578999999987 66788999999999999999964 24799 8999875
No 20
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=9.4e-08 Score=78.23 Aligned_cols=69 Identities=19% Similarity=0.441 Sum_probs=49.8
Q ss_pred ccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHHh-hcChHHHHHHHHHH
Q 014105 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL-LSSDEDKVKYNRYF 219 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~-ll~~e~~~ky~~~~ 219 (430)
.+.|+||++.+ ..++.++|||.||..|+..|+...- + .+.|| .|+..+....+.. ..-..+.+.+.+.+
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~--~----~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQKK--G----PSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSSS--S----SCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhCC--C----CCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 46799999987 5677789999999999999998641 1 46899 8999887654432 22234555555543
No 21
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.51 E-value=1.3e-08 Score=87.17 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=56.7
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHH------hhcChHHH
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY------LLSSDEDK 212 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~------~ll~~e~~ 212 (430)
...++|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+...... .++....+
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G----PQNCA--ACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S----CEECH--HHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C----CCCCC--CCCCcccccccccccchhhhcccHHH
Confidence 4578999999987 67788999999999999999853 2 35799 788754322111 22222221
Q ss_pred HHHHHHHHHHHHhcCCCceecCCCCCCceEEe
Q 014105 213 VKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDF 244 (430)
Q Consensus 213 ~ky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~ 244 (430)
+..+. .-.++||+.+|+..+..
T Consensus 97 --------~~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 97 --------RREVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp --------HHHHH--TSEEECCSTTCCCEEEH
T ss_pred --------HHHHc--ccccccCCCCCCCEeEH
Confidence 12222 23579999999987654
No 22
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=9.7e-08 Score=75.85 Aligned_cols=57 Identities=19% Similarity=0.440 Sum_probs=45.2
Q ss_pred CCccccccccccccCCCeeecc-CCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCC-chh
Q 014105 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA-VGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~-l~~ 200 (430)
...+.|+||++.+ .+++.++ |||.||+.||..||...-..+. ...||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~---~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKK---KAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTC---CBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCC---CCCCCcCcCcccccCH
Confidence 3468999999987 7899996 9999999999999987422121 578998889976 554
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.51 E-value=7.6e-08 Score=73.50 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=42.3
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ .+++.++|||.||+.|+..|+.. + ...|| .|+..+...
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~----~~~CP--~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G----HKTCP--KSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T----CCBCT--TTCCBCSSC
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C----cCCCC--CCcCCCChh
Confidence 3478999999987 67888999999999999999963 2 35799 799987654
No 24
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.50 E-value=8.6e-08 Score=73.37 Aligned_cols=53 Identities=25% Similarity=0.640 Sum_probs=40.9
Q ss_pred CCccccccccccccCCCeeecc--CCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...++|+||++.+...++..++ |||.||..||..++.. + ...|| .|+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~----~~~CP--~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E----NGLCP--ACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S----CSBCT--TTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C----CCCCC--CCCCccCCC
Confidence 4568999999987655455554 9999999999988753 2 35899 899988654
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.49 E-value=1.4e-07 Score=71.33 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=40.8
Q ss_pred CCccccccccccccCCCeeecc-CCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCc
Q 014105 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l 198 (430)
...+.|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S----SSCCS--SSCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C----CCcCC--CCCCcC
Confidence 4578999999987 5778898 99999999999999863 2 35899 899864
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=67.73 Aligned_cols=44 Identities=30% Similarity=0.784 Sum_probs=34.9
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccC
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP 190 (430)
...+.|+||++.+ .+++.++|||.||..|+..|+... . + ...||
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-~-~----~~~CP 56 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDL-E-R----DFPCP 56 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSS-C-C----SCCCS
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhc-C-C----CCCCC
Confidence 4568899999987 567778999999999999998641 1 1 45788
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=75.58 Aligned_cols=52 Identities=23% Similarity=0.563 Sum_probs=43.1
Q ss_pred ccccccccccccCCCeee-ccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHH
Q 014105 141 EMTCGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~ 204 (430)
.++|+||++.+ ..++. ++|||.||..|+..|+... ...|| .|+..+....+.
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 22 VFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCP--HCRAPLQLRELV 74 (100)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCE
T ss_pred CCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC--------cCCCC--CCCCcCCHHHhH
Confidence 57899999987 56787 8999999999999999863 15799 899998765443
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.45 E-value=4.1e-08 Score=73.47 Aligned_cols=54 Identities=28% Similarity=0.818 Sum_probs=42.1
Q ss_pred CCccccccccccccC-----CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHH
Q 014105 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i 203 (430)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..+....+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCP--TCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------CCCC--CCCCccChhhe
Confidence 457889999998732 233788999999999999999752 3799 89998865544
No 29
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.44 E-value=1.4e-07 Score=66.78 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=39.6
Q ss_pred CccccccccccccC--CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPS--DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCC--CCCCcCC
Confidence 45789999998743 347788999999999999999873 4799 8987763
No 30
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.3e-07 Score=70.12 Aligned_cols=51 Identities=27% Similarity=0.846 Sum_probs=39.9
Q ss_pred CCCccccccccccccC-----CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
......|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCT--TTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCC--CCCCccC
Confidence 3457889999998742 22377899999999999999975 23799 8988764
No 31
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.42 E-value=4.5e-08 Score=71.54 Aligned_cols=54 Identities=26% Similarity=0.776 Sum_probs=41.8
Q ss_pred CccccccccccccC-----CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHH
Q 014105 140 EEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (430)
Q Consensus 140 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~ 204 (430)
...+|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCC--CCCccCCcccee
Confidence 35789999998742 23477899999999999999976 23799 899988765443
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.42 E-value=1.2e-07 Score=76.05 Aligned_cols=48 Identities=33% Similarity=0.906 Sum_probs=39.8
Q ss_pred ccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
.+.|+||++.+ ..++.+ +|||.||..|+..|+.. ...|| .|+..+...
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY---------KTQCP--TCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT---------CCBCT--TTCCBCCGG
T ss_pred CCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC---------CCCCC--CCCCcCChh
Confidence 57899999987 467666 89999999999999974 24799 899988653
No 33
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=3.9e-07 Score=67.73 Aligned_cols=51 Identities=24% Similarity=0.584 Sum_probs=40.5
Q ss_pred CCccccccccccccC-CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCP--ICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCc--CcCccccC
Confidence 446789999998754 456778999999999999999762 2599 89987643
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.40 E-value=7.3e-08 Score=79.47 Aligned_cols=50 Identities=30% Similarity=0.738 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
...++|+||++.+ ..++.++|||.||..|+..++.. + ...|| .|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A----SLCCP--FCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T----TSBCT--TTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C----cCCCC--CCCcccCc
Confidence 4478999999987 57888899999999999988753 2 36899 89998864
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.39 E-value=2e-07 Score=77.94 Aligned_cols=48 Identities=25% Similarity=0.663 Sum_probs=40.8
Q ss_pred ccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
.++|+||++.+ ..++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 52 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA----Q----VFSCP--ACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCT
T ss_pred CCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH----C----cCCCC--CCCccCCC
Confidence 57899999987 57888999999999999999972 1 45899 89998855
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.39 E-value=1.2e-07 Score=80.79 Aligned_cols=46 Identities=30% Similarity=0.824 Sum_probs=38.7
Q ss_pred ccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
.++|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR---------KIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT---------CSBCT--TTCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc---------CCcCC--CCCCcCC
Confidence 46799999987 67889999999999999999754 24799 8998774
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=8.9e-08 Score=70.44 Aligned_cols=54 Identities=28% Similarity=0.727 Sum_probs=40.6
Q ss_pred ccccccccc-cccCC--CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHH
Q 014105 141 EMTCGICFE-NYPSD--RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (430)
Q Consensus 141 ~~~C~IC~e-~~~~~--~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~ 204 (430)
..+|+||++ .+... .++.++|||.||..|+..++.. + ..+|| .|+..+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G----AGNCP--ECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T----SSSCT--TTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C----CCcCC--CCCCccccccce
Confidence 568999999 55322 2256799999999999999864 2 35899 899988765543
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.33 E-value=1.3e-06 Score=67.83 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=42.4
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ .+++.++|||.||+.|+..||.. ...|| .|+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN---------SPTDP--FNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc---------CCCCC--CCcCCCChH
Confidence 3579999999987 78999999999999999999984 13799 788887654
No 39
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=7.9e-07 Score=67.01 Aligned_cols=50 Identities=26% Similarity=0.667 Sum_probs=39.5
Q ss_pred CCccccccccccccC-CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
.....|+||++.+.. ..+..++|+|.||..|+..|+... ..|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCP--LCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCT--TTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCC--CcCcccc
Confidence 446789999999854 345566999999999999999752 2799 8998764
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.31 E-value=4.3e-07 Score=69.24 Aligned_cols=53 Identities=25% Similarity=0.642 Sum_probs=41.4
Q ss_pred CCccccccccccccCC-CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhH
Q 014105 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~ 202 (430)
.....|+||++.+... .+..++|+|.||..|+..|+... ..|| .|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---------DSCP--VCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---------CSCT--TTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---------CcCc--CcCCccCCcc
Confidence 4567899999988543 44667999999999999998642 3799 8998876543
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.26 E-value=4e-07 Score=78.76 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=41.7
Q ss_pred ccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
.+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA----Q----VFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh----C----CCcCC--CCCccCCCC
Confidence 57899999987 67888999999999999999974 2 45899 899988654
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.25 E-value=5.2e-07 Score=73.44 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=39.6
Q ss_pred CccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
..++|+||++.+ .+++.+ +|||.||..|+..|+... ..|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETS---------KYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSC---------SBCT--TTCCBSCS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhC---------CcCc--CCCccccc
Confidence 367899999987 567776 999999999999998752 4799 89987753
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.21 E-value=4.4e-07 Score=72.86 Aligned_cols=50 Identities=8% Similarity=-0.069 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ .+++.++|||.||+.|+..||.. ...|| .|+..+...
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN---------SPTDP--FNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS---------CSBCS--SSCCBCCTT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc---------CCCCC--CCCCCCChh
Confidence 4579999999987 78999999999999999999974 13799 888887653
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.21 E-value=7.8e-07 Score=70.09 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=40.2
Q ss_pred CCccccccccccccCC-CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
.....|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCc--CcCccCCC
Confidence 3467899999988543 3667899999999999999854 13799 89987754
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1.5e-06 Score=82.54 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
....+.|+||++.+ .+|+.++|||+||+.|+..|+... + ..|| .|+..+...
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~-----~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G-----HFNP--VTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C-----SSCT--TTCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C-----CCCc--CCCCCCchh
Confidence 34678999999987 789999999999999999999751 2 2399 899988654
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.19 E-value=6.4e-07 Score=63.29 Aligned_cols=49 Identities=22% Similarity=0.639 Sum_probs=37.7
Q ss_pred CccccccccccccCC-Ceeecc-CCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSD-RLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
...+|+||++.+... .++.++ |||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCc--CCCCEeE
Confidence 356799999998543 356676 9999999999999854 23699 8987653
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.19 E-value=1e-06 Score=65.10 Aligned_cols=47 Identities=34% Similarity=0.742 Sum_probs=37.9
Q ss_pred ccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
...|+||++.+. ...+.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ---------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH---------SCSTT--TTCCCCC
T ss_pred CCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC---------cCcCc--CCChhhH
Confidence 567999999873 23578899999999999999864 23799 8998775
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=3.3e-07 Score=65.37 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=36.6
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
...++|+||++.+ ..++.++|||.||..|+.. . .+.|| .|+..+.
T Consensus 4 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~--------~----~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA--------S----GMQCP--ICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS--------S----SSSCS--SCCSSSS
T ss_pred ccCCCceEeCCcc--CCeEEcCCCCcccHHHHcc--------C----CCCCC--cCCcEee
Confidence 3467899999987 5678899999999999866 1 46899 8998764
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=1e-06 Score=66.57 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=40.2
Q ss_pred CCccccccccccccCC-CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
.....|+||++.+... .++.++|+|.||..|+..|+... ..|| .|+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCc--CcCCcCCC
Confidence 3467899999988543 34678999999999999998752 3799 89987754
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.14 E-value=2.5e-06 Score=68.11 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=42.4
Q ss_pred CCccccccccccccCCCeeeccCC-CcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACG-HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.|+||++.+ .+++.++|| |.||+.||..||.. . ..|| .|+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~---~------~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS---D------QTDP--FNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT---S------CBCT--TTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh---C------CCCC--CCCCCCChh
Confidence 4579999999987 789999999 99999999999975 1 2699 798888654
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.11 E-value=2.5e-06 Score=69.88 Aligned_cols=54 Identities=31% Similarity=0.627 Sum_probs=39.5
Q ss_pred ccccccccccccCC----------------CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 141 EMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 141 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
...|+||++.+... ....++|+|.||..||..|+....... ...|| .|+..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~----~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG----SLQCP--SCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSS----CCBCT--TTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCC----CCcCC--CCCCccCC
Confidence 45899999987431 122678999999999999996533222 46899 89987743
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=3.8e-07 Score=75.40 Aligned_cols=45 Identities=27% Similarity=0.627 Sum_probs=38.0
Q ss_pred ccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
.++|+||++.+ ..++.+ +|||.||..|+..++. ..|| .|+..+..
T Consensus 22 ~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP--~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG-----------TGCP--VCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT-----------TBCS--SSCCBCSC
T ss_pred CCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc-----------CCCc--CCCCcCcc
Confidence 57899999987 677888 9999999999998875 3799 89988754
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.10 E-value=9.3e-07 Score=82.20 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=43.5
Q ss_pred CccccccccccccCCCeee-ccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 140 EEMTCGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
..++||||++.+ .+|++ ..|||.||+.||..||... + ...||..+|+..+...
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~----~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---T----TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---S----CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---C----CCCCCcccccCcCchh
Confidence 478999999987 67876 4899999999999999742 2 4689977899987554
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=5.2e-07 Score=67.25 Aligned_cols=47 Identities=28% Similarity=0.747 Sum_probs=37.5
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
.....|+||++.+. . +.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR---------HRNCP--ICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC---------CSSCH--HHHHCTT
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC---------cCcCC--CcCCccc
Confidence 44678999999874 3 78899999999999998762 35798 7877664
No 55
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.99 E-value=3.5e-06 Score=73.85 Aligned_cols=48 Identities=27% Similarity=0.771 Sum_probs=39.1
Q ss_pred CccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. + ...|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS----G----NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT----T----CCBCT--TTCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh----C----cCCCC--CCCCcCC
Confidence 357999999987 456666 99999999999999974 2 35799 8998874
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.91 E-value=1.1e-05 Score=71.35 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
...+.||||++.+ .+|+.++|||.||+.|+..|+... | . .|| .|+..+...
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~----~-tcP--~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----H-FDP--VTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---C----S-BCT--TTCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---C----C-CCC--CCcCCCChh
Confidence 4689999999987 789999999999999999999762 2 2 599 899888654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.87 E-value=5e-06 Score=62.74 Aligned_cols=43 Identities=28% Similarity=0.705 Sum_probs=35.6
Q ss_pred ccccccccccccCCCeeeccCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV-------------DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC-------------SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC-------------ccCC--CcCcCccC
Confidence 46799999876 67888999999 999998755 3799 89987753
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.8e-05 Score=60.76 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=36.9
Q ss_pred CCccccccccccccC------------CCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 139 GEEMTCGICFENYPS------------DRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
....+|+||++.+.. ..++.+ +|+|.|+..|+..|+... -.|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP--~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCP--LCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCT--TTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCC--CcCCCcch
Confidence 345668888887732 224445 599999999999998752 2799 89987754
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=61.04 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=34.7
Q ss_pred ccccccccccccCCCeeeccCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
..+|+||++.+ .+++.++|||. ||..|+.. ...|| .|+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~-------------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA-------------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH-------------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC-------------CCCCc--cCCceecC
Confidence 45799999876 67888999999 99999942 24799 89987743
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.71 E-value=1.6e-05 Score=58.08 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=37.2
Q ss_pred CCccccccccccccCCCeeec--cCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 139 GEEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
.....|.||++.. .+++.+ +|||. ||..|+..++.. + -+|| .|+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~----~-----~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR----N-----KPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT----T-----CCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc----C-----CcCC--CcCcchh
Confidence 3466899999875 455555 99999 899999988853 1 3699 8998774
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.69 E-value=9.9e-06 Score=67.81 Aligned_cols=56 Identities=25% Similarity=0.758 Sum_probs=43.4
Q ss_pred CCCccccccccccccC-----CCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHHH
Q 014105 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i~ 204 (430)
+.....|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCT--TTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCC--CCCCcCChhcce
Confidence 4557889999998742 22377899999999999999975 23799 899988766543
No 62
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.63 E-value=1.9e-05 Score=61.37 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=39.8
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccc-ccCCCCCCCcccCCchh
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW-SDHGERTGGFYACNRYE 353 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~-~~h~~~~g~~~~C~~~~ 353 (430)
+-||.|...+....+-..++|. .|++.||+.|+.+| ..|.. ..|..|.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~ 74 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQ 74 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHH
T ss_pred eECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHH
Confidence 5699999999888888889998 79999999999999 45643 4576654
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.61 E-value=2.6e-05 Score=56.79 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=35.9
Q ss_pred CccccccccccccCCCeeec--cCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
....|.||++.. .+.+.+ +|||. ||..|...++.. + -+|| .|+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~----~-----~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA----G-----ASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT----T-----CBCT--TTCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh----C-----CcCC--CcCchhh
Confidence 356899999875 344444 99998 999999988754 1 3799 8998774
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=8.4e-05 Score=54.97 Aligned_cols=46 Identities=22% Similarity=0.616 Sum_probs=36.7
Q ss_pred CCCccccccccccccCCCeeeccCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 138 DGEEMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
......|.||++.. .+++.++|||. ||..|+.. ...|| .|+..|..
T Consensus 12 ~~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-------------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-------------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-------------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-------------CCCCC--CCCcchhc
Confidence 34567899999875 67889999999 99999982 13799 89987743
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.56 E-value=5.8e-05 Score=61.00 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=37.8
Q ss_pred CccccccccccccCC----------------CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
...+|.||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCS--SSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCc--CCCCcce
Confidence 456799999887532 2455789999999999999875 23699 8998753
No 66
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.55 E-value=5.2e-05 Score=74.80 Aligned_cols=47 Identities=32% Similarity=0.730 Sum_probs=39.5
Q ss_pred cccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 142 MTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 142 ~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
..|+||++.+ ..++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 333 ~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~----~~~CP--~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E----GQGCP--FCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T----CSBCT--TTCCBCCE
T ss_pred CCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C----CCCCC--CCCCccCC
Confidence 6899999987 67888999999999999999874 1 34799 89988754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.52 E-value=2.6e-05 Score=59.54 Aligned_cols=43 Identities=33% Similarity=0.729 Sum_probs=35.0
Q ss_pred ccccccccccccCCCeeeccCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
...|+||++.. .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL-------------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC-------------SBCT--TTCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc-------------CcCC--CCCchhhC
Confidence 35799999876 67888999999 999998643 2799 89988754
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.00014 Score=55.51 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCeeeccCC-----CcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchh
Q 014105 139 GEEMTCGICFENYPSDRLLAAACG-----HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~ 200 (430)
.....|.||++.+.......++|. |.|...||..|+... + ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~----~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D----TRCCE--LCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C----CSBCS--SSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C----CCCCC--CCCCeeec
Confidence 446689999998865556678996 999999999999874 1 35899 89987743
No 69
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.94 E-value=0.00029 Score=53.76 Aligned_cols=40 Identities=28% Similarity=0.699 Sum_probs=34.8
Q ss_pred CCCCCC--CCcceeecCCCCceEecC----CCcccccccccccccc
Q 014105 299 SKPCPR--CKRPIEKNQGCMHMTCTP----PCKFEFCWLCLGQWSD 338 (430)
Q Consensus 299 tk~CP~--C~~~IeK~~GCnhm~C~~----~C~~~FCw~C~~~~~~ 338 (430)
.+-||. |+..|....+...++|.. .|++.||+.|+..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 478997 999999888999999941 4999999999999865
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.94 E-value=0.00016 Score=59.44 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=0.8
Q ss_pred CccccccccccccCC----------------CeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
..-+|.||++.+... .++.++|+|.|+..|+..|+... ..|| .|+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---------~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCP--LDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---------CcCC--CCCCeee
Confidence 346899999987431 12235899999999999998762 3699 8987653
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.93 E-value=0.0002 Score=69.98 Aligned_cols=42 Identities=29% Similarity=0.807 Sum_probs=35.5
Q ss_pred ccccccccccccCCCeeeccCCCc-ccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
...|+||++.+ ..++.++|||. ||..|+..+ ..|| .|+..+.
T Consensus 295 ~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~-------------~~CP--~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL-------------RKCP--ICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC-------------SBCT--TTCCBCC
T ss_pred CCCCCccCCcC--CceEEcCCCChhHhHHHHhcC-------------CcCC--CCCCCcc
Confidence 57899999976 67888999999 999998744 3799 8998774
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.54 E-value=0.0015 Score=47.07 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=38.3
Q ss_pred ccccccccccccCCCeeec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhH
Q 014105 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~ 202 (430)
.+.|+|+++.+ .+++.+ ++||.|++.|+..|+... + .|| ..+..+....
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~------~cP--~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G------NDP--ITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S------BCT--TTCCBCCGGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C------CCc--CCcCCCChhh
Confidence 47799999987 678888 899999999999999852 2 388 6666665543
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0056 Score=45.75 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=37.6
Q ss_pred CccccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
...+|.||++.+... ..-..|+|.|-..|+..||.+.- .-.|| .|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNA-------EPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCS-------SCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcC-------CCCCC--CCcCcCC
Confidence 456899999988543 22337999999999999997632 24799 7988764
No 74
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.67 E-value=0.016 Score=55.83 Aligned_cols=113 Identities=17% Similarity=0.319 Sum_probs=66.2
Q ss_pred ccEEecHHHHHHHHHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhcHHHHHHHhCC---CCCCCcCC-----C
Q 014105 66 NYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGL---LEKPAVQF-----P 137 (430)
Q Consensus 66 ~~~~l~~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~~~~~~~~gl---~~~~~~~~-----~ 137 (430)
...+|.++.....+++...+= ..+|+.++-+ -+.+..-.++ +..+.... .
T Consensus 247 e~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si------~eNL~~IL~i~~fP~p~~~~~~~~~e~ 304 (381)
T 3k1l_B 247 SLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNI------HKNLLRMFDLCYFPMPDWSDGPKLDEE 304 (381)
T ss_dssp EEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCH------HHHHHHHTTCSSCCCCCGGGCCSCTTC
T ss_pred eeEEECChhHhHHHHHHHhhh----------------hhhcCccCCH------HHHHHHHhCccccCCCccccccccccc
Confidence 566777776655555443322 2477765432 1334444566 22211111 2
Q ss_pred CCCccccccccccccC-CCee-----eccCCCcccHHHHHHHHHhhhcCCC--ceeecccCCCCCCCCchhhH
Q 014105 138 DGEEMTCGICFENYPS-DRLL-----AAACGHPFCSSCWTGYISTAINDGP--GCLMLRCPDPSCGAAVGQDM 202 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~Cl~~yi~~~i~~g~--~~~~i~CP~~~C~~~l~~~~ 202 (430)
......|+||++.+.. ..+. ...|+|.|...|+..|+.+.-.... ....=.|| -|+..++-..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCccH
Confidence 2356789999998754 2222 2469999999999999987543221 11234799 8999886543
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.49 E-value=0.023 Score=38.07 Aligned_cols=40 Identities=13% Similarity=0.334 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
+.+.|.+..++.+.++..|..+|...+||++..+..||.+
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4567899999999999999999999999999999999875
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.05 E-value=0.052 Score=40.36 Aligned_cols=52 Identities=23% Similarity=0.566 Sum_probs=40.6
Q ss_pred CCCCCccccccccccccCCCeeecc--CCCcccHHHHHHHHHhhhcCCCceeecccCC
Q 014105 136 FPDGEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPD 191 (430)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~ 191 (430)
.++...+.|.+|-+.+...-++..+ =.|.||..|-+.+|+.+-..+ .+.||.
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~----EvyCPS 63 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG----EVYCPS 63 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS----CCCCTT
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC----cEECCC
Confidence 4456788999999988666666665 479999999999999976543 567874
No 77
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.69 E-value=0.056 Score=38.78 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhcH
Q 014105 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (430)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 119 (430)
.+.+.|.+...+.+.++..|+.+|...+||++..+..||.++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456678999999999999999999999999999999999764
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.46 E-value=0.026 Score=44.21 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=30.9
Q ss_pred ccccccccccCCCeeeccCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCc
Q 014105 143 TCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (430)
Q Consensus 143 ~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l 198 (430)
-|++|--++. .....+||.|.||.+|...+....- -.|| .|+..|
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~~--------k~Cp--~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKGD--------KMCP--GCSDPV 47 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTTC--------CBCT--TTCCBC
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhccC--------CCCc--CcCCee
Confidence 4888864432 2345679999999999999886532 1466 666655
No 79
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.86 E-value=0.02 Score=40.89 Aligned_cols=37 Identities=32% Similarity=0.855 Sum_probs=30.0
Q ss_pred CceecCCCCCCceEEeecCCCCceEEe-c--CCCccccccCCcC
Q 014105 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-R--CSYSFCWNCTEEA 269 (430)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C~~~~ 269 (430)
+.+.||. |...|... .+-..++| . |++.||+.|+.+|
T Consensus 5 ~~k~CP~--C~~~Iek~--~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECPK--CHVTIEKD--GGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCTT--TCCCCSSC--CSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECcC--CCCeeEeC--CCCCcEEECCCCcCCEEeeCcCCCc
Confidence 4578984 99988764 45678899 5 9999999999776
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.62 E-value=0.036 Score=43.70 Aligned_cols=33 Identities=15% Similarity=0.569 Sum_probs=25.0
Q ss_pred ccccccccccccCCCeee--ccCCCcccHHHHHHHH
Q 014105 141 EMTCGICFENYPSDRLLA--AACGHPFCSSCWTGYI 174 (430)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~--l~CgH~fC~~Cl~~yi 174 (430)
.+.|+||.+.+. ...+. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHHh
Confidence 578999997542 23333 8899999999999843
No 81
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.20 E-value=0.12 Score=36.76 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=35.7
Q ss_pred CccccccccccccCCCeeeccCC--C---cccHHHHHHHHHhhhcCCCceeecccCCCCCCCCch
Q 014105 140 EEMTCGICFENYPSDRLLAAACG--H---PFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~ 199 (430)
....|.||++... ....+||. | .|...|+..|+..+- ...|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTISR-------NTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHHT-------CSBCT--TTCCBCC
T ss_pred CCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhCC-------CCccC--CCCCeee
Confidence 4567999998742 33356754 4 899999999998642 35899 8987764
No 82
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.49 E-value=0.23 Score=36.16 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHcC-CCHHHHHHHHHhcCCChhhhhhhhhhcH
Q 014105 79 QEEDITRISTVLS-ISKVAASILLRFYNWSVSKVHDEWFADE 119 (430)
Q Consensus 79 ~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 119 (430)
+.+.|.+...|.+ .++..|+.+|..++||++..+..||.+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4567999999999 7899999999999999999999999763
No 83
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.20 E-value=0.21 Score=36.25 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=35.1
Q ss_pred HHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
+.|.+...+.+.++..|+..|...+||.+..++.||.+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46888889999999999999999999999999999975
No 84
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=91.03 E-value=0.26 Score=32.80 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHcCCCH-HHHHHHHHhcCCChhhhhhhhh
Q 014105 79 QEEDITRISTVLSISK-VAASILLRFYNWSVSKVHDEWF 116 (430)
Q Consensus 79 ~~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~~~l~~~~~ 116 (430)
..+.|....++.+++. ..|+..|-..+||.+.....||
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3566888899999995 9999999999999998877765
No 85
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.31 E-value=0.43 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhcH
Q 014105 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (430)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 119 (430)
++++|..|++..+++...|+..|...+|++...++.++.+.
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 36799999999999999999999999999999999888653
No 86
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.09 E-value=0.13 Score=36.72 Aligned_cols=33 Identities=24% Similarity=0.751 Sum_probs=23.3
Q ss_pred ecCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceeec
Q 014105 255 CRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKN 312 (430)
Q Consensus 255 C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK~ 312 (430)
=.||+.||..|.. .|+..+...||.|+.++.++
T Consensus 24 ~~CgH~fC~~Ci~-------------------------~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVD-------------------------LLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHH-------------------------HHHHTTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHH-------------------------HHHHcCCCcCCCCCCccccc
Confidence 3799999999852 12222347899999998653
No 87
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=89.75 E-value=0.15 Score=38.37 Aligned_cols=51 Identities=22% Similarity=0.446 Sum_probs=35.7
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcc-----ccccccccccccCCCCCCCcccCCchh
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF-----EFCWLCLGQWSDHGERTGGFYACNRYE 353 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~-----~FCw~C~~~~~~h~~~~g~~~~C~~~~ 353 (430)
..||.|+.+|+.++| +..|. .|+. .||-.|+.+......-...-|.|+.-.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~ 58 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGH 58 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTT
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccCC
Confidence 579999999999888 66798 7874 379999988754322111356777643
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=88.52 E-value=0.3 Score=38.22 Aligned_cols=48 Identities=23% Similarity=0.732 Sum_probs=33.1
Q ss_pred ecCCCCCCceEEeecCCCCceEEe-cCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccee
Q 014105 232 WCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIE 310 (430)
Q Consensus 232 ~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~Ie 310 (430)
+|+. |+..+.. ...- .|++.||..|. ..|.+...+.||.|+.+|.
T Consensus 3 fC~~--C~~Pi~i-------ygRmIPCkHvFCydCa-------------------------~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDK--CGLPIKV-------YGRMIPCKHVFCYDCA-------------------------ILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTT--TCSBCSE-------EEEEETTCCEEEHHHH-------------------------HHHHHTTCCBCTTTCCBCS
T ss_pred ecCc--cCCCeEE-------EeeeccccccHHHHHH-------------------------HHHHhccCCCCcCcCCeee
Confidence 5774 8765532 3455 79999999994 2233344589999999997
Q ss_pred ecC
Q 014105 311 KNQ 313 (430)
Q Consensus 311 K~~ 313 (430)
+.+
T Consensus 49 rVe 51 (101)
T 3vk6_A 49 RIE 51 (101)
T ss_dssp EEE
T ss_pred eeE
Confidence 554
No 89
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=88.33 E-value=0.11 Score=40.81 Aligned_cols=35 Identities=20% Similarity=0.590 Sum_probs=29.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++|. .|||.||+.|+..|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHHC
Confidence 57999998886 467778 799999999999986543
No 90
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=88.03 E-value=0.23 Score=45.62 Aligned_cols=95 Identities=17% Similarity=0.397 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHh---cCCChhhhhhhhhhcHHHHHHHhCCCCCCCcCCCCCCccccccccccccCCCeeec-cCCCccc
Q 014105 91 SISKVAASILLRF---YNWSVSKVHDEWFADEERVRKAVGLLEKPAVQFPDGEEMTCGICFENYPSDRLLAA-ACGHPFC 166 (430)
Q Consensus 91 ~i~~~~a~~LL~~---~~W~~~~l~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC 166 (430)
+++..+|..||.. -+|=.. ....|.-.+..+..-...+.. .. +.....|.||.+.+... ... .|+|.|.
T Consensus 132 ~l~~~eae~lL~~lv~~gWl~~-~~g~~~l~~R~l~El~~~l~~---~~-~~~i~~C~iC~~iv~~g--~~C~~C~~~~H 204 (238)
T 3nw0_A 132 KMRKKEAEQVLQKFVQNKWLIE-KEGEFTLHGRAILEMEQYIRE---TY-PDAVKICNICHSLLIQG--QSCETCGIRMH 204 (238)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHHHHH---HC-TTTCCBCTTTCSBCSSC--EECSSSCCEEC
T ss_pred CCCHHHHHHHHHHHHHhcchhh-hCCEEEecCccHHHHHHHHHH---hc-CCCCCcCcchhhHHhCC--cccCccChHHH
Confidence 4667777777754 455533 222333333332221111110 00 12356799999887532 333 3999999
Q ss_pred HHHHHHHHHhhhcCCCceeecccCCCCCCCCchhh
Q 014105 167 SSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (430)
Q Consensus 167 ~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~ 201 (430)
..|+..|+.+. + ..+|| .|+..++..
T Consensus 205 ~~C~~~~~~~~---~----~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 205 LPCVAKYFQSN---A----EPRCP--HCNDYWPHE 230 (238)
T ss_dssp HHHHHHHTTTC---S----SCBCT--TTCCBCCSC
T ss_pred HHHHHHHHHhC---C----CCCCC--CCCCCCCCC
Confidence 99999999762 1 35899 899877543
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=87.79 E-value=0.19 Score=38.90 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=38.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccc-----cccccccccccCCCCCCCcccCCchh
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFE-----FCWLCLGQWSDHGERTGGFYACNRYE 353 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~-----FCw~C~~~~~~h~~~~g~~~~C~~~~ 353 (430)
..||.|+..++.++| +.+|. .|+.. ||-.|..+......-...-|.|+.-.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~ch 88 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGH 88 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTT
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccCC
Confidence 789999999999988 77898 89865 69999988754433222456777543
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.48 E-value=0.26 Score=35.15 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=30.6
Q ss_pred CceecCCCCCCceEEeecCCCCceEEecCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc
Q 014105 229 KTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRP 308 (430)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~ 308 (430)
....||- |...+.. + +.-.||+.||..|... |+......||.|+..
T Consensus 14 ~~~~C~I--C~~~~~~------p-~~~~CgH~fC~~Ci~~-------------------------~~~~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEK--CHLVLCS------P-KQTECGHRFCESCMAA-------------------------LLSSSSPKCTACQES 59 (66)
T ss_dssp CCEECTT--TCCEESS------C-CCCSSSCCCCHHHHHH-------------------------HHTTSSCCCTTTCCC
T ss_pred cCCCCCC--CChHhcC------e-eECCCCCHHHHHHHHH-------------------------HHHhCcCCCCCCCcC
Confidence 3457875 7654421 1 1237999999988522 222233689999998
Q ss_pred eee
Q 014105 309 IEK 311 (430)
Q Consensus 309 IeK 311 (430)
|..
T Consensus 60 ~~~ 62 (66)
T 2ecy_A 60 IVK 62 (66)
T ss_dssp CCT
T ss_pred CCh
Confidence 864
No 93
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.94 E-value=0.5 Score=34.61 Aligned_cols=37 Identities=30% Similarity=0.760 Sum_probs=25.9
Q ss_pred eEEe-cCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceeecCC
Q 014105 252 DVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 314 (430)
Q Consensus 252 ~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK~~G 314 (430)
.+.. .|++.||..|.. .|+ ..+ ..||-|+..|....|
T Consensus 38 ~~~~l~C~H~fh~~Ci~------------~w~-------------~~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 38 LLRVLPCNHEFHAKCVD------------KWL-------------KAN-RTCPICRADSGPSSG 75 (75)
T ss_dssp EEEEETTTEEEETTHHH------------HHH-------------HHC-SSCTTTCCCCCCCCC
T ss_pred eEEEECCCCHhHHHHHH------------HHH-------------HcC-CcCcCcCCcCCCCCC
Confidence 3444 799999998852 232 222 689999999987665
No 94
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.90 E-value=1.8 Score=31.59 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHc-CCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 78 RQEEDITRISTVL-SISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 78 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.+...|++|.+++ .+..+....+|.+|+-|++.++...+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5667888899888 6799999999999999999999988775
No 95
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=84.90 E-value=0.27 Score=34.25 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=21.2
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.+.||+|+..+.-...-+..+|. +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 48999999855422334689998 898874
No 96
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.53 E-value=0.23 Score=35.12 Aligned_cols=33 Identities=27% Similarity=0.677 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+. +.++- .|||.||+.|+..|...
T Consensus 21 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHc
Confidence 57999987776 34554 49999999999999653
No 97
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.33 E-value=0.92 Score=30.61 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=22.6
Q ss_pred CCCCCCCCc-ceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKR-PIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~-~IeK~~GCnhm~C~~~C~~~F 328 (430)
...||.|+. .|.-+..=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999998 88777666778898 677654
No 98
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=84.24 E-value=0.29 Score=42.09 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=27.9
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++.. .|||.||+.|+..|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTK-ECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeC-CCCChhHHHHHHHHHHh
Confidence 47999988876 467775 59999999999999654
No 99
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=84.15 E-value=1.9 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.2
Q ss_pred HHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhh
Q 014105 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (430)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~ 115 (430)
.+.|.++.+. |.+...|+..|+..+||++...+-+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888886 9999999999999999998876543
No 100
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.44 E-value=0.49 Score=32.19 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=19.9
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.+.||+|+..+.-...=+...|. .||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~-kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACG-KCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECS-SSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECC-CCCCEE
Confidence 47899999754422222788998 798753
No 101
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.69 E-value=0.34 Score=35.26 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+.. .++-. .|||.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHHc
Confidence 579999887752 45655 59999999999888643
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.36 E-value=0.78 Score=31.60 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=21.3
Q ss_pred cCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceee
Q 014105 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (430)
Q Consensus 256 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK 311 (430)
.||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 69999999997541 2789999988763
No 103
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=81.96 E-value=0.55 Score=35.62 Aligned_cols=35 Identities=26% Similarity=0.674 Sum_probs=28.3
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCccccccccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~ 337 (430)
.-.||.|+....+..+=..+.|. .|++.|- ++.|.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a---ggay~ 61 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT---GGSYK 61 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE---CCSSS
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec---CCEec
Confidence 46899999999999888899998 7988763 44454
No 104
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.95 E-value=0.53 Score=34.12 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=25.4
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
..||-|...+. +.++- .|||.||+.|+..|..
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 57999988775 34444 4999999999999975
No 105
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.78 E-value=0.88 Score=32.31 Aligned_cols=32 Identities=25% Similarity=0.790 Sum_probs=22.5
Q ss_pred EecCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceee
Q 014105 254 TCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (430)
Q Consensus 254 ~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK 311 (430)
.-.|++.||..|.. .|+ .. ...||.|+..|.+
T Consensus 37 ~~~CgH~fc~~Ci~------------~~~-------------~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 37 STECGHVFCSQCLR------------DSL-------------KN-ANTCPTCRKKINH 68 (69)
T ss_dssp ECSSSCEEEHHHHH------------HHH-------------HH-CSSCTTTCCCCCC
T ss_pred eCCCCChhcHHHHH------------HHH-------------Hc-CCCCCCCCCccCc
Confidence 33899999998852 232 22 3689999998853
No 106
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.34 E-value=0.89 Score=33.04 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.-.||.|+.+++-..+...++|. .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 35799999999988888889997 676655
No 107
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.18 E-value=0.51 Score=34.78 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++- .|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHH
Confidence 57999988775 34554 49999999999998764
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.13 E-value=0.44 Score=35.50 Aligned_cols=33 Identities=21% Similarity=0.638 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.+.- .|||.||+.|+..|...
T Consensus 20 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 20 VTCPICLELLK-----EPVSA--DCNHSFCRACITLNYES 52 (85)
T ss_dssp TSCTTTCSCCS-----SCEEC--TTSCCBCHHHHHHHHHH
T ss_pred CCCcCCChhhC-----cceeC--CCCCHHHHHHHHHHHHh
Confidence 57999988775 23444 49999999999988543
No 109
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=80.73 E-value=0.43 Score=37.78 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=28.1
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++.. .|||.||+.|+..|...+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHhC
Confidence 57999988875 467775 599999999999986543
No 110
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.63 E-value=0.76 Score=34.52 Aligned_cols=54 Identities=22% Similarity=0.443 Sum_probs=30.7
Q ss_pred ceecCCCCCCceEEeecCCCCceEEecCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcce
Q 014105 230 TKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPI 309 (430)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~I 309 (430)
...||- |...+.. .....+.-.||+.||..|.. .|+... .....||.|+..+
T Consensus 15 ~~~C~I--C~~~~~~---~~~~~~~~~CgH~fC~~Ci~------------~~~~~~-----------~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPI--CMESFTE---EQLRPKLLHCGHTICRQCLE------------KLLASS-----------INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTT--TCCBCCT---TSSCEEECSSSCEEEHHHHH------------HHHHHC-----------SSCBCCTTTCCCB
T ss_pred CCCCcc--CCccccc---cCCCeEECCCCChhhHHHHH------------HHHHcC-----------CCCcCCCCCCCcc
Confidence 356775 7544321 11112334899999999852 222211 1247899999987
Q ss_pred ee
Q 014105 310 EK 311 (430)
Q Consensus 310 eK 311 (430)
..
T Consensus 67 ~~ 68 (88)
T 2ct2_A 67 RI 68 (88)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 111
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=80.07 E-value=0.6 Score=38.81 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++- +|||.||+.|...|....
T Consensus 54 ~~C~iC~~~~~-----~~~~~--~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTL--NCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCS-----SEEEE--TTSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccC-----CceEC--CCCCCccHHHHHHHHHcC
Confidence 46999988774 34554 499999999999987544
No 112
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=79.75 E-value=0.51 Score=34.57 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++-. .|||.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHh
Confidence 57999987775 345532 39999999999998653
No 113
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=78.24 E-value=2.1 Score=39.94 Aligned_cols=44 Identities=11% Similarity=0.326 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhcHH
Q 014105 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEE 120 (430)
Q Consensus 77 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~~ 120 (430)
..+.+.|.+.+++.+.++..|+..|..++|+.+..++.||.++.
T Consensus 13 ~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 34667799999999999999999999999999999999998764
No 114
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=78.22 E-value=0.74 Score=32.80 Aligned_cols=34 Identities=26% Similarity=0.840 Sum_probs=25.1
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
...||-|...+. +...-. +|||.||+.|...|..
T Consensus 5 ~~~C~IC~~~~~-----~~~~~~-~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 5 AERCPICLEDPS-----NYSMAL-PCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCCSSCCSCCC-----SCEEET-TTTEEESTTHHHHHHH
T ss_pred CCCCeeCCcccc-----CCcEec-CCCCeeHHHHHHHHHh
Confidence 368999988775 223455 5999999999988864
No 115
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=78.19 E-value=0.54 Score=36.52 Aligned_cols=35 Identities=20% Similarity=0.565 Sum_probs=27.5
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++.. .|||.||+.|...|...+
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 23 LRCGICFEYFN-----IAMIIP-QCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHTTC
T ss_pred CCcccCChhhC-----CcCEEC-CCCCHhhHHHHHHHHHCC
Confidence 58999988775 355665 599999999999987543
No 116
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.79 E-value=0.61 Score=36.93 Aligned_cols=34 Identities=26% Similarity=0.645 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++ . .|||.||+.|+..|....
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSS
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhC
Confidence 58999988774 2344 3 499999999999986543
No 117
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=77.77 E-value=1 Score=35.92 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++- .|||.||..|+..|..++
T Consensus 16 ~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHC
Confidence 47999987765 23333 499999999999997653
No 118
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=77.46 E-value=0.62 Score=37.84 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|...+. +.++- .|||.||..|+..|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHh
Confidence 57999988775 34444 4999999999988865
No 119
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=77.40 E-value=0.097 Score=41.11 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=44.1
Q ss_pred CceEEe-cCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCC-CcceeecCCCCceEecCCCccc
Q 014105 250 NYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRC-KRPIEKNQGCMHMTCTPPCKFE 327 (430)
Q Consensus 250 ~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C-~~~IeK~~GCnhm~C~~~C~~~ 327 (430)
.+...| .|+..||..|...+|....-...... .....+. ......|+.+ +.+++ ++|. .|+..
T Consensus 16 ~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l-~~~~~~~------~~~~~~C~~H~~e~l~-------~fC~-~~~~~ 80 (101)
T 2jun_A 16 DAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL-IEPIPDS------HIRGLMCLEHEDEKVN-------MYCV-TDDQL 80 (101)
T ss_dssp BCCEEETTTTEEECHHHHHHHSCSCSSSTTCCB-SSCCCSC------CSSCCCCSSCSSSCCC-------EEET-TTTEE
T ss_pred CceEECCcCChHHhHHHCHHHhccCCccCCCee-ecccccc------CccCCcCcCcCCCcce-------EECC-CCCCc
Confidence 456789 99999999998776753211000000 0000000 0123579999 47777 9999 89999
Q ss_pred ccccccc
Q 014105 328 FCWLCLG 334 (430)
Q Consensus 328 FCw~C~~ 334 (430)
.|+.|..
T Consensus 81 iC~~C~~ 87 (101)
T 2jun_A 81 ICALCKL 87 (101)
T ss_dssp ECHHHHH
T ss_pred cchhcCC
Confidence 9999974
No 120
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=76.76 E-value=0.9 Score=33.35 Aligned_cols=33 Identities=18% Similarity=0.563 Sum_probs=25.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++- .|||.||+.|+..|...
T Consensus 13 ~~C~IC~~~~~-----~p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLT-----EPLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECS-----SCCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccC-----CeeEC--CCCCHHHHHHHHHHHHh
Confidence 46999987764 23443 49999999999998765
No 121
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=75.81 E-value=0.92 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=26.6
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+...+ ..+.-. .|++.||+.|+..|...
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVL-PCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEEC-TTSCEEETTHHHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEec-CCCCcccHHHHHHHHHc
Confidence 57999987774221 235555 69999999999998643
No 122
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.80 E-value=0.73 Score=33.31 Aligned_cols=34 Identities=32% Similarity=0.703 Sum_probs=25.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
..||-|...+. +.++- .|||.||+.|+..|...+
T Consensus 16 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 16 PECAICLQTCV-----HPVSL--PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CBCSSSSSBCS-----SEEEE--TTTEEEEHHHHHHCTTCS
T ss_pred CCCccCCcccC-----CCEEc--cCCCHHHHHHHHHHHHCC
Confidence 57999987764 23444 499999999999986543
No 123
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.50 E-value=0.61 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.770 Sum_probs=24.6
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
..||-|...+.. .+. . .|||.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSS-----CCC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCc-----cEe-C-CCCCccCHHHHHHHHH
Confidence 579999887753 233 3 5999999999999953
No 124
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.44 E-value=1.3 Score=35.57 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=25.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|...+. +.++-. .|||.||+.|+..|..
T Consensus 23 ~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc
Confidence 68999987775 344443 4999999999988864
No 125
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=74.25 E-value=0.88 Score=32.55 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=26.4
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
..||-|...+.... .+... .||+.||+.|+..|...+
T Consensus 15 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 15 EKCTICLSILEEGE---DVRRL-PCMHLFHQVCVDQWLITN 51 (69)
T ss_dssp CSBTTTTBCCCSSS---CEEEC-TTSCEEEHHHHHHHHHHC
T ss_pred CCCeeCCccccCCC---cEEEe-CCCCHHHHHHHHHHHHcC
Confidence 67999987764221 24444 599999999999996543
No 126
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=73.91 E-value=1.1 Score=33.40 Aligned_cols=35 Identities=29% Similarity=0.851 Sum_probs=23.4
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~ 337 (430)
..||-|.-++.. ..-..+.|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~-~d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEI-DDINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCT-TTTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCcc-ccccccccC--CCCCcCHHHHHHHH
Confidence 579999887742 112223354 99999999987754
No 127
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=73.68 E-value=1.4 Score=29.80 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=26.9
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+.... ..+.-. .|++.||..|+..|...
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLP-RCGHGFHAECVDMWLGS 42 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECS-SSCCEECTTHHHHTTTT
T ss_pred CcCccCCccccCCC--ceEECC-CCCCcccHHHHHHHHHc
Confidence 67999988776433 234443 49999999999999654
No 128
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.10 E-value=0.86 Score=33.84 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=25.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++ . .|||.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQ-----NPVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCC-----SEEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhc-----CeeE-c-cCCCHhHHHHHHHHHHC
Confidence 57999988775 2344 4 59999999999988643
No 129
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=72.80 E-value=8.2 Score=26.83 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhh
Q 014105 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 77 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
..+.+.|..++...+++..-+...|...+||.++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46778999999999999999999999999999998877654
No 130
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=71.28 E-value=1.1 Score=37.91 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
-.||-|...+. +.++ . .||+.||+.|+..|..++
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhC
Confidence 57999988775 3455 4 599999999999887653
No 131
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.23 E-value=1.1 Score=33.27 Aligned_cols=32 Identities=25% Similarity=0.665 Sum_probs=24.1
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
..||-|...+.. .++- .|||.||..|+..|..
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHH
Confidence 579999887752 3333 4999999999988854
No 132
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=71.00 E-value=7.6 Score=25.01 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.1
Q ss_pred HHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhh
Q 014105 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
+.|.++.+ +|.+...|...|+..+||++...+-.+.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45667766 6999999999999999999987766554
No 133
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=70.37 E-value=1.7 Score=34.39 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=23.0
Q ss_pred cCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceeecC
Q 014105 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQ 313 (430)
Q Consensus 256 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK~~ 313 (430)
.|++.||..|... |+..... .....||-|+..+.+..
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCC
Confidence 7999999999532 3211000 12368999998886443
No 134
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.36 E-value=9.7 Score=25.41 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.4
Q ss_pred HHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhh
Q 014105 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
.+.|.++.+ .|.+...|+..|+..+||+++..+-.++
T Consensus 9 ~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 344555554 4899999999999999999998876664
No 135
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.28 E-value=2.7 Score=30.05 Aligned_cols=33 Identities=30% Similarity=0.656 Sum_probs=25.9
Q ss_pred CCccccccccccccCCCeeeccC-CCcccHHHHHHHH
Q 014105 139 GEEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYI 174 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~yi 174 (430)
.+..-|.||.++ ..+.-+.| +-.||..||+..-
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 345679999986 34666789 7899999999865
No 136
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=70.26 E-value=0.82 Score=32.80 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=27.2
Q ss_pred CCCCCCCcceeec-CCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKN-QGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~-~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+... .+=..+.-. .|||.||+.|+..|...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc
Confidence 5799998777543 122333455 59999999999998643
No 137
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=69.98 E-value=0.85 Score=34.72 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|...+. +.++-. .|||.||+.|+..|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHHH
Confidence 47999987665 345543 4999999999988853
No 138
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=69.80 E-value=1.1 Score=37.48 Aligned_cols=33 Identities=18% Similarity=0.611 Sum_probs=26.1
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++. .||+.||+.|+..|-..
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILSS 64 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHhc
Confidence 47999988775 44665 49999999999998643
No 139
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.75 E-value=1.2 Score=31.84 Aligned_cols=31 Identities=32% Similarity=0.896 Sum_probs=24.4
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
..||-|...+.. +. . +|+|.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~~------~~-~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LI-L-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EE-E-TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cc-c-CCCCcccHHHHHHHHH
Confidence 679999877653 33 3 5999999999999865
No 140
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=69.71 E-value=11 Score=26.26 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhh
Q 014105 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWF 116 (430)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~ 116 (430)
.+.+.|..++...+++..-+...|...+||.++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567889999999999999999999999999999887764
No 141
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=69.59 E-value=1.3 Score=32.42 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=21.3
Q ss_pred cCCCc-cccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceee
Q 014105 256 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (430)
Q Consensus 256 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK 311 (430)
.||+. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 999996432 689999998864
No 142
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.30 E-value=2 Score=31.39 Aligned_cols=36 Identities=25% Similarity=0.629 Sum_probs=23.9
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+.... .+.-. .|+|.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~~ 51 (78)
T 2ect_A 16 LECPVCKEDYALGE---SVRQL-PCNHLFHDSCIVPWLEQ 51 (78)
T ss_dssp CCCTTTTSCCCTTS---CEEEC-TTSCEEETTTTHHHHTT
T ss_pred CCCeeCCccccCCC---CEEEe-CCCCeecHHHHHHHHHc
Confidence 68999977664221 12223 48888888898888643
No 143
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=67.77 E-value=8.2 Score=28.28 Aligned_cols=36 Identities=6% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.|.++.+ ++.+...|+..|+..+||++...+-++.+
T Consensus 32 ~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 32 QIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4555555 58999999999999999999988877653
No 144
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.70 E-value=11 Score=28.53 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=34.7
Q ss_pred CCccccccccccccCC---Ce-eec-cCCCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCc
Q 014105 139 GEEMTCGICFENYPSD---RL-LAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~---~~-~~l-~CgH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l 198 (430)
.....|.||-+.+... ++ +.. .|+-..|+.|+.--.. +| .-.|| .|+..+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG----~q~Cp--qCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EG----TQNCP--QCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TS----CSSCT--TTCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----cc----Ccccc--ccCCcc
Confidence 3457899999986532 23 333 3889999999865443 45 35799 898766
No 145
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=67.66 E-value=3.6 Score=32.95 Aligned_cols=29 Identities=14% Similarity=0.522 Sum_probs=23.5
Q ss_pred CCCCCCCCcceeec----CCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~----~GCnhm~C~~~C~~~F 328 (430)
.+.||.|+.++.-. .|.+.+.|+ .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 47899999887532 368899999 899976
No 146
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=67.38 E-value=5.9 Score=38.83 Aligned_cols=51 Identities=20% Similarity=0.495 Sum_probs=31.5
Q ss_pred CCCceecCCCCCCceEEeecCCCCceEEecCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCC
Q 014105 227 NRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCK 306 (430)
Q Consensus 227 ~~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~ 306 (430)
......||- |-... ...+.-.||+.||..|.. .|+......||.|+
T Consensus 329 ~~~~~~C~I--Cle~~-------~~pv~lpCGH~FC~~Ci~-------------------------~wl~~~~~~CP~CR 374 (389)
T 2y1n_A 329 GSTFQLCKI--CAEND-------KDVKIEPCGHLMCTSCLT-------------------------SWQESEGQGCPFCR 374 (389)
T ss_dssp TTSSSBCTT--TSSSB-------CCEEEETTCCEECHHHHH-------------------------HHHHHTCSBCTTTC
T ss_pred cCCCCCCCc--cCcCC-------CCeEEeCCCChhhHHHHH-------------------------HHHhcCCCCCCCCC
Confidence 333457885 74322 112333899999998852 23222347899999
Q ss_pred cceee
Q 014105 307 RPIEK 311 (430)
Q Consensus 307 ~~IeK 311 (430)
.+|..
T Consensus 375 ~~i~~ 379 (389)
T 2y1n_A 375 CEIKG 379 (389)
T ss_dssp CBCCE
T ss_pred CccCC
Confidence 98864
No 147
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=67.35 E-value=3.5 Score=29.86 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=21.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
-.||.|+.+++-..+=..+.|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5799999999877655668887 666555
No 148
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=67.11 E-value=3.8 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.-.||.|+.+++-..+=..++|. .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 35799999999877665678887 676655
No 149
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=66.75 E-value=1.2 Score=31.13 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecC-CCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~-GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+.... +=..+.-. .|||.||..|+..|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc
Confidence 46888877765431 11233444 59999999999998643
No 150
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=65.64 E-value=1.5 Score=35.19 Aligned_cols=33 Identities=24% Similarity=0.627 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++. .||+.||+.|+..|...
T Consensus 19 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 19 YECPICLMALR-----EAVQT--PCGHRFCKACIIKSIRD 51 (118)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHHHH
T ss_pred CCCCcCChhhc-----CeEEC--CcCChhhHHHHHHHHhh
Confidence 47999988775 33554 49999999999988543
No 151
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=65.34 E-value=4.2 Score=29.51 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.-.||.|+.+++-..+=..+.|. .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 36899999999866655678887 676555
No 152
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.69 E-value=2.5 Score=31.04 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=22.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (430)
.+|..|++.|...+ +.|+ |+..||-.=
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechhc
Confidence 58999999887653 8897 999999654
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=64.65 E-value=4.7 Score=37.01 Aligned_cols=29 Identities=0% Similarity=-0.246 Sum_probs=18.1
Q ss_pred CceecCCCCCCceEEeecCCCCceEEecCCCccccccC
Q 014105 229 KTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCT 266 (430)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 266 (430)
....||- |..++. ..|+-.||++||..|-
T Consensus 207 ~~~~c~i--~~~~~~-------dPv~~~~gh~f~~~~i 235 (281)
T 2c2l_A 207 DYLCGKI--SFELMR-------EPCITPSGITYDRKDI 235 (281)
T ss_dssp STTBCTT--TCSBCS-------SEEECSSCCEEETTHH
T ss_pred cccCCcC--cCCHhc-------CCeECCCCCEECHHHH
Confidence 4456774 654431 2244479999998884
No 154
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=64.53 E-value=1.6 Score=34.77 Aligned_cols=33 Identities=24% Similarity=0.599 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
-.||-|...+. +.++ . .||+.||+.|+..|...
T Consensus 24 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhH
Confidence 57999988875 3455 4 59999999999998654
No 155
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.94 E-value=3.2 Score=29.61 Aligned_cols=28 Identities=21% Similarity=0.675 Sum_probs=22.3
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (430)
..+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc----CEEee--cCCEecccc
Confidence 47899999987644 37897 999999654
No 156
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=63.17 E-value=3.2 Score=34.34 Aligned_cols=31 Identities=13% Similarity=0.485 Sum_probs=24.0
Q ss_pred hcCCCCCCCCccee-ec---CCCCceEecCCCcccc
Q 014105 297 ANSKPCPRCKRPIE-KN---QGCMHMTCTPPCKFEF 328 (430)
Q Consensus 297 ~~tk~CP~C~~~Ie-K~---~GCnhm~C~~~C~~~F 328 (430)
...+.||.|+.++- +. .|.+.+.|+ .|++.+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 34589999998874 22 378899999 899965
No 157
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=61.70 E-value=1.4 Score=33.69 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=25.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+.... .+.-. .|++.||+.|+..|...
T Consensus 41 ~~C~IC~~~~~~~~---~~~~l-~C~H~Fh~~Ci~~wl~~ 76 (91)
T 2l0b_A 41 MCCPICCSEYVKGD---VATEL-PCHHYFHKPCVSIWLQK 76 (91)
T ss_dssp SEETTTTEECCTTC---EEEEE-TTTEEEEHHHHHHHHTT
T ss_pred CCCcccChhhcCCC---cEEec-CCCChHHHHHHHHHHHc
Confidence 46999987665322 23334 49999999999999643
No 158
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.87 E-value=15 Score=25.93 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=29.9
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhcH
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 119 (430)
.|.++.+ ++.+...|+..|+..+||++...+-++...
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3555555 599999999999999999999888777643
No 159
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.23 E-value=2.2 Score=30.84 Aligned_cols=36 Identities=28% Similarity=0.693 Sum_probs=25.1
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
..||-|...+..... .+.. .|+|.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~--~C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGIC--PCKHAFHRKCLIKWLEV 51 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEE--TTTEEEEHHHHHHHHHH
T ss_pred CCCcCCCcccCCCCc--EEEc--CCCCEecHHHHHHHHHc
Confidence 579999877653321 1223 49999999999998644
No 160
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.21 E-value=5.7 Score=28.62 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.-.||.|+.+++-...=+...|. .|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 35899999999876655668887 676655
No 161
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.54 E-value=3.7 Score=29.28 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=21.7
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (430)
..+|..|+..+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 46899999887643 37897 999999654
No 162
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=57.19 E-value=4.9 Score=29.04 Aligned_cols=32 Identities=25% Similarity=0.723 Sum_probs=27.3
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGE 341 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~~ 341 (430)
..||.++.+++ ++|. .|+...|+.|.. ..|..
T Consensus 19 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~--~~H~~ 50 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQ-TDQTCICYLCMF--QEHKN 50 (72)
T ss_dssp CBCTTTCCBCC-------EEES-SSCCEECHHHHH--TTTSS
T ss_pred CcCcccCCceE-------EEeC-CCCeEEccccCC--CCCCC
Confidence 67999988887 9999 899999999975 66753
No 163
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.91 E-value=4.1 Score=30.50 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=23.6
Q ss_pred CCCCCCcceeecCCCCceEecCCCc--ccccccccccccc
Q 014105 301 PCPRCKRPIEKNQGCMHMTCTPPCK--FEFCWLCLGQWSD 338 (430)
Q Consensus 301 ~CP~C~~~IeK~~GCnhm~C~~~C~--~~FCw~C~~~~~~ 338 (430)
.||.|+.++++ |. .|| ..||-.|++..+.
T Consensus 33 fCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HH-hcCCcCeeeccCCCEeec
Confidence 79999999986 76 687 5799999877654
No 164
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=56.06 E-value=25 Score=23.73 Aligned_cols=40 Identities=8% Similarity=0.167 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHcCC-CHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 78 RQEEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 78 ~~~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
...+.|.++.+ +|. +...++..|+..+||+++.++-.+..
T Consensus 10 ~~~~~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNS-MGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 34556666665 478 89999999999999999988877654
No 165
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=55.59 E-value=2.9 Score=35.79 Aligned_cols=32 Identities=22% Similarity=0.564 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|..++. +.+++. ||+.||..|+..|..
T Consensus 19 ~~C~IC~~~~~-----~pv~~~--CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALR-----EAVQTP--CGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCS-----SEEECT--TSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhc-----CcEECC--CCCHHHHHHHHHHHH
Confidence 47999998876 346764 999999999998854
No 166
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.22 E-value=21 Score=25.20 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.8
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.|.++.+ ++.+...|+..|+..+||++...+-++.+
T Consensus 12 ~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 12 ALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3555554 69999999999999999999888766643
No 167
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.76 E-value=23 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 83 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
|.++.+ +|.+...|+..|+..+||+++..+-+|.+
T Consensus 33 I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 33 INQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 444443 48999999999999999999998877764
No 168
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=53.55 E-value=5.5 Score=32.32 Aligned_cols=29 Identities=14% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCCCCCCcceeec----CCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~----~GCnhm~C~~~C~~~F 328 (430)
.+.||.|+.++.-. .+-+.+.|+ .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 37899999877622 678899999 899866
No 169
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=53.37 E-value=5.9 Score=26.27 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=26.7
Q ss_pred CCCCCC-CcceeecCCCCceEecCCCccccccccccccccCCC
Q 014105 300 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGE 341 (430)
Q Consensus 300 k~CP~C-~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~~ 341 (430)
..||.+ +..+. ++|. .|+...|+.|.. ..|..
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~~~~~iC~~C~~--~~H~~ 39 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCE-SCDTLTCRDCQL--NAHKD 39 (50)
T ss_dssp CBCSSSTTCBCC-------EEET-TTTEEECHHHHH--TTTTT
T ss_pred CcCcCCCCCCEE-------EEeC-CCCEEEecccCC--CcCCC
Confidence 579999 78887 9999 899999999976 46653
No 170
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.89 E-value=4.1 Score=29.92 Aligned_cols=28 Identities=21% Similarity=0.664 Sum_probs=21.9
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (430)
..+|..|++.+... -+.|+ |+..||-.=
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTTT
T ss_pred CccchhhcCccccc----ceEec--cCCEecccc
Confidence 47899999887654 38897 999999654
No 171
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.43 E-value=3.9 Score=28.73 Aligned_cols=36 Identities=25% Similarity=0.715 Sum_probs=24.6
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCccccccCCcCCCCC
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPV 273 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~ 273 (430)
+.|- +|...+. ......| .|+..||..|-.-.|..+
T Consensus 16 ~~C~--~C~~~~~-----~~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 16 RFCY--GCQGELK-----DQHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp CEET--TTTEECT-----TSEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred Cccc--ccCcccC-----CCccEECCccCcCcccchhHHHHhhc
Confidence 3575 4776541 1223679 999999999987777654
No 172
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.40 E-value=16 Score=27.66 Aligned_cols=58 Identities=22% Similarity=0.671 Sum_probs=36.8
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcce
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPI 309 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~I 309 (430)
..|-. |+--|-.. ..+...|-| .|++..|..|. ++. ++...+-||+|+++.
T Consensus 17 qiCqi--CGD~VG~~-~~Ge~FVAC~eC~FPvCrpCy----------EYE---------------rkeG~q~CpqCktrY 68 (93)
T 1weo_A 17 QFCEI--CGDQIGLT-VEGDLFVACNECGFPACRPCY----------EYE---------------RREGTQNCPQCKTRY 68 (93)
T ss_dssp CBCSS--SCCBCCBC-SSSSBCCSCSSSCCCCCHHHH----------HHH---------------HHTSCSSCTTTCCCC
T ss_pred Ccccc--ccCccccC-CCCCEEEeeeccCChhhHHHH----------HHH---------------HhccCccccccCCcc
Confidence 34543 66555444 335577889 89999887763 211 223458999999988
Q ss_pred eecCCCC
Q 014105 310 EKNQGCM 316 (430)
Q Consensus 310 eK~~GCn 316 (430)
.+..|+-
T Consensus 69 kr~kgsp 75 (93)
T 1weo_A 69 KRLRGSP 75 (93)
T ss_dssp CCCTTCC
T ss_pred ccccCCC
Confidence 7665554
No 173
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=52.31 E-value=5.7 Score=30.00 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=22.1
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (430)
..+|..|++.+-.. +-+.|+ |+..||-.=
T Consensus 25 ~~rC~~C~kkvgl~---~~f~Cr--Cg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECR--CGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECT--TCCEECTTT
T ss_pred CccchhhCCeeccc---CCeEcC--CCCEecccC
Confidence 46899999876543 348997 999999654
No 174
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.10 E-value=6.8 Score=29.28 Aligned_cols=41 Identities=20% Similarity=0.644 Sum_probs=26.9
Q ss_pred HHHHHhc-CCCCCCCCcceeecCCCCceEecCCCccccccccccc
Q 014105 292 MNWILAN-SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (430)
Q Consensus 292 ~~~i~~~-tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~ 335 (430)
..|+... ...|+.|+...- -.=-.-.|+ .||..||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs--~~~RrHHCR-~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFS--ISRRKHHCR-NCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCB--TTBCCEECT-TTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCccc--CccccccCC-CCCCEEChHHhCC
Confidence 4576543 568999998764 122345788 8999999999864
No 175
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=51.61 E-value=22 Score=23.96 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=29.0
Q ss_pred HHHHHHHhHcCC-CHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 81 EDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 81 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
+.|.++.+ +|. +...+...|+..+||++..++..+.+
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 34555554 488 88889999999999999988877654
No 176
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=49.69 E-value=14 Score=31.17 Aligned_cols=36 Identities=31% Similarity=0.720 Sum_probs=24.7
Q ss_pred CCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceeecCCCCceEecCCCcc
Q 014105 270 HRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (430)
Q Consensus 270 H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (430)
=+|+.|..+++- ... |.||+|..+++ ++.|+..||+
T Consensus 96 lRPAicdkAR~K----------Qq~-----k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 96 LRPAICDKARQK----------QQR-----KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp ECCCSSHHHHHH----------HHH-----SBCSSSCCBEE------EECCCTBTTB
T ss_pred echHHHHHHHHH----------hhc-----CCCCCCCccee------eEeccCcCCC
Confidence 467889876541 112 99999998886 6888744543
No 177
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=49.54 E-value=8.3 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=21.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFE 327 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~ 327 (430)
-.||+|+.++.+.+ ++|.|. .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCCE
T ss_pred ecccccCCceEECC--CEEECC-CCCCE
Confidence 47999999998876 999998 78753
No 178
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.30 E-value=3.3 Score=31.74 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|..++. +.++-. .||+.||..|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHH
Confidence 46999988776 667764 4999999999998853
No 179
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=49.16 E-value=7.7 Score=24.59 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
+.|+.++.+++ ++|. .|+...|+.|... ..|.
T Consensus 4 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~~-~~H~ 35 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCK-DDGTLSCVICRDS-LKHA 35 (42)
T ss_dssp CCCCSSCSSCC-------CCCC-SSSSSSCCTTSSC-SSCT
T ss_pred ccchhhCCeee-------EEeC-CCCeEEeccCCCC-CCCC
Confidence 57999988887 9999 8999999999752 3454
No 180
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.73 E-value=12 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=16.0
Q ss_pred CCCCCCCc-ceeecCCCCceEecCCCcc
Q 014105 300 KPCPRCKR-PIEKNQGCMHMTCTPPCKF 326 (430)
Q Consensus 300 k~CP~C~~-~IeK~~GCnhm~C~~~C~~ 326 (430)
..||.|+. .|.....=.-+.|. .||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~-~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICP-ECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECT-TTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeC-CCCC
Confidence 57999976 56544444446666 4543
No 181
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.44 E-value=4.5 Score=29.98 Aligned_cols=18 Identities=22% Similarity=0.757 Sum_probs=15.0
Q ss_pred CCccccccccccccccCC
Q 014105 323 PCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 323 ~C~~~FCw~C~~~~~~h~ 340 (430)
.|+|.|+..|+..|-...
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC
T ss_pred CCCCccChHHHHHHHHhC
Confidence 499999999999996543
No 182
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=48.34 E-value=7.4 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.522 Sum_probs=26.4
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
..||.++.+++ ++|. .|+...|+.|... ..|.
T Consensus 9 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~~-~~H~ 40 (53)
T 2did_A 9 SLCPQHHEALS-------LFCY-EDQEAVCLICAIS-HTHR 40 (53)
T ss_dssp CBCTTTCCBCC-------EEES-SSCSEECHHHHTS-STTT
T ss_pred CcChhhCCeee-------EEeC-CCCeEEeccccCC-CCCC
Confidence 67999998887 9999 8999999999742 3454
No 183
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.36 E-value=14 Score=28.08 Aligned_cols=38 Identities=32% Similarity=0.665 Sum_probs=26.3
Q ss_pred CCCCCccccccccccccCC--CeeeccCCCcccHHHHHHH
Q 014105 136 FPDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (430)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y 173 (430)
.++.....|.+|...|... ...--.||+.||..|....
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3444556799999887532 2233469999999997654
No 184
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=45.67 E-value=10 Score=31.92 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCCC--CCcceeecCCCCceEecCCCcccccc
Q 014105 300 KPCPR--CKRPIEKNQGCMHMTCTPPCKFEFCW 330 (430)
Q Consensus 300 k~CP~--C~~~IeK~~GCnhm~C~~~C~~~FCw 330 (430)
+.||+ |+.-+.-..-=+..+|. +|++.+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cg-kc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCG-KCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEES-SSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccC-CCceEEEe
Confidence 78999 99866544333678999 89998875
No 185
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=44.41 E-value=11 Score=33.01 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=20.2
Q ss_pred CCCCCCCCcce-eecCCCCceEecCCCccccc
Q 014105 299 SKPCPRCKRPI-EKNQGCMHMTCTPPCKFEFC 329 (430)
Q Consensus 299 tk~CP~C~~~I-eK~~GCnhm~C~~~C~~~FC 329 (430)
-+.||+|+..+ -....+.| +|. +|++.|+
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CG-kC~~t~~ 142 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCG-KCHLTLK 142 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EET-TTCCCBC
T ss_pred cccCCccCCCccccCccCCC-ccC-CceeEEE
Confidence 37899999654 34556655 888 7877764
No 186
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=43.34 E-value=5 Score=32.35 Aligned_cols=25 Identities=20% Similarity=0.690 Sum_probs=0.0
Q ss_pred CCCCceEecCCCccccccccccccccC
Q 014105 313 QGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 313 ~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
+.|.-+.-. |++.|+..|...|-..
T Consensus 75 ~~~~v~~~~--C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 75 EECTVAWGV--CNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------
T ss_pred cccccccCC--cCceEcHHHHHHHHHc
Confidence 345545554 9999999999999644
No 187
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.22 E-value=9.6 Score=26.39 Aligned_cols=32 Identities=25% Similarity=0.645 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
+.|+.++.+++ ++|. .|+...|+.|... ..|.
T Consensus 15 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~s-~eH~ 46 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQ-EDGKVICWLCERS-QEHR 46 (59)
T ss_dssp SBCTTTCCBCC-------EEET-TTCSEECHHHHTS-TTTT
T ss_pred ccChhhCceee-------eecC-CCCcEEecccCCC-CcCC
Confidence 57999998887 9999 8999999999742 3454
No 188
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.80 E-value=24 Score=26.34 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=26.7
Q ss_pred CCCCCccccccccccccCC--CeeeccCCCcccHHHHHHH
Q 014105 136 FPDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (430)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y 173 (430)
.|+.....|.+|...|... ...--.||+.||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3455667899999887532 2233469999999997653
No 189
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=42.79 E-value=8.2 Score=29.65 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=33.9
Q ss_pred CccccccccccccCCCeeeccC-CCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhH
Q 014105 140 EEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~ 202 (430)
..+.|..|+-.. .. .+.| .|++|..|+...+.. .=+|| -|+..++..+
T Consensus 27 G~~nCKsCWf~~--k~--LV~C~dHYLCl~CLtlmL~~---------SdrCp--IC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFEN--KG--LVECNNHYLCLNCLTLLLSV---------SNRCP--ICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCC--SS--EEECSSCEEEHHHHHHTCSS---------SSEET--TTTEECCCCS
T ss_pred CcccChhhcccc--CC--eeeecchhhHHHHHHHHHhh---------ccCCc--ccCCcCCcce
Confidence 467899998542 22 2344 699999999887765 23798 8998776543
No 190
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=42.51 E-value=11 Score=34.87 Aligned_cols=26 Identities=38% Similarity=0.932 Sum_probs=19.4
Q ss_pred CCCCCCCcceeec--CCCCceEecCCCcc
Q 014105 300 KPCPRCKRPIEKN--QGCMHMTCTPPCKF 326 (430)
Q Consensus 300 k~CP~C~~~IeK~--~GCnhm~C~~~C~~ 326 (430)
++||.|+.+|+|. +|=.-.+|. .|+.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP-TCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT-TTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCCC
Confidence 7999999999864 666666665 5653
No 191
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=42.36 E-value=9.7 Score=35.34 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=19.6
Q ss_pred CCCCCCCcceeec--CCCCceEecCCCc
Q 014105 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (430)
Q Consensus 300 k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (430)
++||.|+.+|+|. +|=.-.+|. .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP-VCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTS
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999864 666666776 665
No 192
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.13 E-value=43 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHcCCC-HHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 78 RQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 78 ~~~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
..++.|.++.+. +.+ ...++..|+..+||+++.++..|..
T Consensus 16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 334556666654 775 6677999999999999999887764
No 193
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=41.55 E-value=23 Score=30.71 Aligned_cols=30 Identities=0% Similarity=-0.248 Sum_probs=18.9
Q ss_pred CCceecCCCCCCceEEeecCCCCceEEecCCCccccccC
Q 014105 228 RKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCT 266 (430)
Q Consensus 228 ~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 266 (430)
+....||- |..++. ..|.-.||+.||..|-
T Consensus 104 p~~f~CPI--~~elm~-------DPV~~~~Ghtfer~~I 133 (179)
T 2f42_A 104 PDYLCGKI--SFELMR-------EPCITPSGITYDRKDI 133 (179)
T ss_dssp CGGGBCTT--TCSBCS-------SEEECTTSCEEEHHHH
T ss_pred cHhhcccC--ccccCC-------CCeECCCCCEECHHHH
Confidence 45568885 655432 1233379999998774
No 194
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.55 E-value=17 Score=29.42 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=28.1
Q ss_pred HHHHh-cCCCCCCCCcceeecCCCCceEecCCCccccccccccc
Q 014105 293 NWILA-NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (430)
Q Consensus 293 ~~i~~-~tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~ 335 (430)
.|+.. ....|+.|+...-- .=-.-.|+ .||..||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCR-QCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECT-TTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCC-CCCeEEChHHhCC
Confidence 35443 35689999987641 22345798 8999999999754
No 195
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=41.46 E-value=12 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=20.1
Q ss_pred CCCCCCCcc--e----eecCCCCceEecCCCcccc
Q 014105 300 KPCPRCKRP--I----EKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 300 k~CP~C~~~--I----eK~~GCnhm~C~~~C~~~F 328 (430)
-.||.|+.. | .|..|=-++.|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 579988765 2 345677788888 677766
No 196
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=41.39 E-value=10 Score=35.31 Aligned_cols=25 Identities=44% Similarity=0.986 Sum_probs=19.4
Q ss_pred CCCCCCCcceeec--CCCCceEecCCCc
Q 014105 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (430)
Q Consensus 300 k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (430)
++||.|+.+|+|. +|=.-.+|. .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP-RCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECC-CCC
Confidence 7999999999964 676666676 564
No 197
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.14 E-value=15 Score=29.85 Aligned_cols=30 Identities=27% Similarity=0.884 Sum_probs=21.6
Q ss_pred hcCCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 297 ANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 297 ~~tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
...-+||+|+...-=..|=+ ..|. .|+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~l-~vCP-eC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGAL-LVCP-ECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSS-EEET-TTTEEE
T ss_pred ccCCCCCCCCCcceEecCCe-EECC-cccccc
Confidence 34579999998776555544 7787 687776
No 198
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=40.90 E-value=11 Score=35.04 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=19.3
Q ss_pred CCCCCCCcceeec--CCCCceEecCCCc
Q 014105 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (430)
Q Consensus 300 k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (430)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR-QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999864 666666676 564
No 199
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=40.86 E-value=10 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=16.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (430)
-.|+.|+..++...+ ..+.|. .||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp-~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCK-DCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCS-SSCC
T ss_pred EECCCCCCcceeCCC-CCccCC-CCCc
Confidence 368888888775433 446676 5665
No 200
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=40.65 E-value=10 Score=24.82 Aligned_cols=33 Identities=21% Similarity=0.567 Sum_probs=26.0
Q ss_pred CCCCCCC-cceeecCCCCceEecCCCccccccccccccccCCC
Q 014105 300 KPCPRCK-RPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGE 341 (430)
Q Consensus 300 k~CP~C~-~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~~ 341 (430)
..|+..+ .++. ++|. .|+...||.|.. ...|..
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~-~~~H~~ 40 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV-FGIHKA 40 (48)
T ss_dssp CBCSSSTTSBCC-------EEET-TTTEEECHHHHH-HSTTTT
T ss_pred CcCCCCCCcccc-------EEcC-CCCeeEcccccC-CCcCCC
Confidence 5699888 7777 9999 899999999963 245553
No 201
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=40.15 E-value=11 Score=34.84 Aligned_cols=25 Identities=36% Similarity=0.781 Sum_probs=19.5
Q ss_pred CCCCCCCcceeec--CCCCceEecCCCc
Q 014105 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (430)
Q Consensus 300 k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (430)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 7899999999864 666667776 665
No 202
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.94 E-value=12 Score=26.61 Aligned_cols=31 Identities=35% Similarity=0.785 Sum_probs=23.6
Q ss_pred ceecCCCCCCceEEeecCCCCceEEe-cCCCccccccCC
Q 014105 230 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 267 (430)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 267 (430)
...|+.++|... +...+.| .|+..||..++.
T Consensus 12 ~~~Cs~~~Ck~~-------~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQR-------EMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCC-------CSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCC-------CccceECCCCCcccCcccCC
Confidence 468998899864 2245799 699999998863
No 203
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.84 E-value=11 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~ 334 (430)
..|+.++..++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCE-VDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEET-TTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcC-CCCcEEecccCC
Confidence 57999988887 9999 899999999975
No 204
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.81 E-value=17 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=21.9
Q ss_pred CceecCCCCCCceEEeecCC--CCceEEe-cCCCcc
Q 014105 229 KTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYSF 261 (430)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~f 261 (430)
.+.+||. |++.+...... +...+.| .|++.+
T Consensus 3 ~m~FCp~--Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIE--CNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSS--SCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcC--CCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 3679985 99998776432 3456888 888765
No 205
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=39.57 E-value=49 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.5
Q ss_pred cCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 90 LSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 90 l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
+|.+...|+..|+..+||++...+-.+.+
T Consensus 39 MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 39 FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 58999999999999999999988776654
No 206
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.57 E-value=17 Score=27.04 Aligned_cols=36 Identities=28% Similarity=0.744 Sum_probs=25.2
Q ss_pred CCCCccccccccccccCC--CeeeccCCCcccHHHHHH
Q 014105 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTG 172 (430)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~ 172 (430)
++.....|.+|...|... ...--.||..||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 344556799999887532 223346999999999864
No 207
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=39.02 E-value=13 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=26.2
Q ss_pred CCCCCC-CcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C-~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
..||.+ +.+++ ++|. .|+...|+.|.. ...|.
T Consensus 9 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~-~~~H~ 41 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV-FGIHK 41 (64)
T ss_dssp CCCSSCTTCCCC-------SEES-SSCCCCCSHHHH-SSSTT
T ss_pred CcCcCcCCCccc-------eEcC-cCCceeCccccC-CCcCC
Confidence 579999 78887 9999 899999999964 24554
No 208
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.66 E-value=13 Score=30.09 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=23.0
Q ss_pred CCCCCccccccccccccCC--CeeeccCCCcccHHHHHHHH
Q 014105 136 FPDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGYI 174 (430)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~yi 174 (430)
.|......|..|...|... ...--.||..||..|....+
T Consensus 14 ~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 14 SPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3555567899998877531 22334699999999976554
No 209
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=38.39 E-value=11 Score=36.20 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=21.5
Q ss_pred cCCCc-cccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceee
Q 014105 256 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (430)
Q Consensus 256 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK 311 (430)
.||+. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999996432 579999999874
No 210
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=38.24 E-value=62 Score=21.09 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHcCCC-HHHHHHHHHhcCCChhhhhhhhhh
Q 014105 78 RQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 78 ~~~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
...+.|.++.+ +|.+ ...++..|+..+||+++.++..|+
T Consensus 6 ~~~~~i~~L~~-MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 34556666665 4775 556689999999999998887664
No 211
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.80 E-value=26 Score=23.91 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=27.0
Q ss_pred HHHHHHhHcCCCHHH-HHHHHHhcCCChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVA-ASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~-a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.|.++.+. +.+... ++..|+..+||+++.++..|..
T Consensus 12 ~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 12 QLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45555543 886554 5999999999999999887754
No 212
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=37.53 E-value=18 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=22.5
Q ss_pred ceecCCCCCCceEEeecCCCCceEEe-cCCCccccc
Q 014105 230 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (430)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (430)
.+.||++.|+..+.... ......| .|+..++++
T Consensus 118 ~~~c~~~~cg~g~fma~--h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLAN--HKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEE--CSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEecc--cCCCcccCCCceEEEec
Confidence 47899999986332221 1246789 899998864
No 213
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.07 E-value=59 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=30.7
Q ss_pred HHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.+.|.++.+ ++++...|+..|+..+|+++...+-+|..
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 445666665 59999999999999999999988876654
No 214
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.77 E-value=15 Score=29.75 Aligned_cols=37 Identities=27% Similarity=0.620 Sum_probs=25.4
Q ss_pred CCCCccccccccccccCC--CeeeccCCCcccHHHHHHH
Q 014105 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (430)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y 173 (430)
|+.....|.+|...|... ...--.||+.||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 344456799999887532 2233469999999997654
No 215
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=36.22 E-value=26 Score=28.05 Aligned_cols=53 Identities=26% Similarity=0.651 Sum_probs=0.0
Q ss_pred ccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc-eeecCCCCc-eEecCCCcc-----------
Q 014105 260 SFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRP-IEKNQGCMH-MTCTPPCKF----------- 326 (430)
Q Consensus 260 ~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~-IeK~~GCnh-m~C~~~C~~----------- 326 (430)
..|++|.+.-|....|.. +.|.+|+.+ =-....|.. +.|. .|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~----------------------~~C~~Cg~~~gH~~~~C~~~~~C~-~Cg~~GH~~~~C~~~ 61 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH----------------------IICSYCGATDDHYSRHCPKAIQCS-KCDEVGHYRSQCPHK 61 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS----------------------CCCTTTCCTTTCCTTTGGGSSCSS-SSSCSSSSTTTSCCC
T ss_pred CcccCCCCCCcCcccCcC----------------------CcCcCCCCcCCccCcccCCccccc-ccCCCCCccccCcCc
Q ss_pred ---ccccccccc
Q 014105 327 ---EFCWLCLGQ 335 (430)
Q Consensus 327 ---~FCw~C~~~ 335 (430)
..||.|+..
T Consensus 62 ~~~~~C~~Cg~~ 73 (124)
T 2lli_A 62 WKKVQCTLCKSK 73 (124)
T ss_dssp CCCCSSSSSCSS
T ss_pred ccCccCCCCCcC
No 216
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.08 E-value=55 Score=24.39 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.|.++.+ +|.+...|+..|+..+||++...+-.|..
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3445554 69999999999999999999888776654
No 217
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=35.83 E-value=9.4 Score=30.03 Aligned_cols=25 Identities=20% Similarity=0.666 Sum_probs=17.5
Q ss_pred CCCCceEecCCCccccccccccccccC
Q 014105 313 QGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (430)
Q Consensus 313 ~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (430)
++|.-+.- .|+|.|+..|+..|-..
T Consensus 64 ~~~~~~~~--~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWG--VCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEE--TTSCEEEHHHHHHHHTT
T ss_pred ccceEeec--ccCcEECHHHHHHHHHc
Confidence 34444444 49999999999999643
No 218
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=35.63 E-value=18 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=22.3
Q ss_pred CceecCCCCCCceEEeecC--CCCceEEe-cCCCcc
Q 014105 229 KTKWCPAPGCDYAVDFVVG--SGNYDVTC-RCSYSF 261 (430)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~--~~~~~v~C-~C~~~f 261 (430)
.+.+||. |+.++..... .....+.| .|++..
T Consensus 3 ~~~FCp~--CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCRD--CNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCSS--SCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCcccc--cCccCcccccCcCCCCEEECCcCCCee
Confidence 3679995 9999876643 33467889 898754
No 219
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.36 E-value=20 Score=27.08 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=24.4
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCccccccccccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~ 335 (430)
...|..|+...-.. =-.-.|+ .||..||+.|...
T Consensus 9 ~~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 36788888765421 2335788 8999999999754
No 220
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.29 E-value=17 Score=25.28 Aligned_cols=38 Identities=32% Similarity=0.718 Sum_probs=28.6
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
..|+.|.+.= -.+||-|. |. .|+..||-.||+.+.--.
T Consensus 10 ~~C~iC~KTK-FADG~Gh~-C~-yCk~r~CaRCGg~v~lr~ 47 (62)
T 2a20_A 10 PTCGICHKTK-FADGCGHN-CS-YCQTKFCARCGGRVSLRS 47 (62)
T ss_dssp CCCSSSSCSC-CCSSCCEE-BT-TTCCEECTTSEEEEESST
T ss_pred chhhhhccce-eccCCCcc-cc-ccCCeeecccCCEeeecC
Confidence 5788886543 25899986 55 699999999999886533
No 221
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=34.79 E-value=1.1e+02 Score=25.33 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=33.9
Q ss_pred CCccccccccccccCCCeeec-cCCCcccHHHHHHHHH----hhh--cCCCceeecccCCCCCCCC
Q 014105 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYIS----TAI--NDGPGCLMLRCPDPSCGAA 197 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~yi~----~~i--~~g~~~~~i~CP~~~C~~~ 197 (430)
.....|.||.+- .+++.. .|...||..|+..-+. ..| ..+ .-.|| .|...
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~----~W~C~--~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN----QWYCY--ICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT----CCCCT--TTCCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC----CCEee--cccCc
Confidence 446789999864 444444 5999999999997663 222 334 45788 67654
No 222
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=34.72 E-value=28 Score=23.95 Aligned_cols=27 Identities=30% Similarity=0.934 Sum_probs=18.7
Q ss_pred CCCCCCCcceeecCCCCceEecC-CCcccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTP-PCKFEF 328 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~-~C~~~F 328 (430)
-.||.|+.+++-.. ....|.. .|+..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988666 6677751 255443
No 223
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.35 E-value=14 Score=34.13 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=27.0
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|..++. +.++-. .|||.||-.|...|-.
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHST
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHHH
Confidence 57999998886 778876 6999999999987643
No 224
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=33.32 E-value=14 Score=25.86 Aligned_cols=22 Identities=36% Similarity=0.869 Sum_probs=15.1
Q ss_pred cCCCCCCCCcceeecCCCCceEecCCCc
Q 014105 298 NSKPCPRCKRPIEKNQGCMHMTCTPPCK 325 (430)
Q Consensus 298 ~tk~CP~C~~~IeK~~GCnhm~C~~~C~ 325 (430)
+.-.||+|+.+.. .|..|. .||
T Consensus 29 ~l~~c~~cGe~~~-----~H~vc~-~CG 50 (60)
T 3v2d_5 29 TLVPCPECKAMKP-----PHTVCP-ECG 50 (60)
T ss_dssp CCEECTTTCCEEC-----TTSCCT-TTC
T ss_pred ceeECCCCCCeec-----ceEEcC-CCC
Confidence 3467888888876 566665 565
No 225
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.58 E-value=24 Score=26.28 Aligned_cols=36 Identities=28% Similarity=0.614 Sum_probs=24.7
Q ss_pred CCCCccccccccccccCC--CeeeccCCCcccHHHHHH
Q 014105 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTG 172 (430)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~ 172 (430)
|+.....|.+|...|..- .-.--.||..||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445566899999887432 223346999999999543
No 226
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.53 E-value=22 Score=31.63 Aligned_cols=33 Identities=24% Similarity=0.625 Sum_probs=24.8
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~ 335 (430)
..|+.|+...- -.--.-.|+ .||.-||..|...
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr-~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCR-NCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECT-TTCCEECSTTSCE
T ss_pred CccCCCCCccC--CcccccccC-CcCCEEChHHhCC
Confidence 68999987763 222346788 8999999999764
No 227
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.40 E-value=6.2 Score=30.77 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHHhhhcCCCceeecccCCCCCCCCchhhHH
Q 014105 162 GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (430)
Q Consensus 162 gH~fC~~Cl~~yi~~~i~~g~~~~~i~CP~~~C~~~l~~~~i 203 (430)
.|.-|..|+.......+..+..+.++.|| ..|...|..-.+
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP-~~Cga~i~rckL 53 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCP-LVCGAVFHSCKA 53 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECT-TCCSCEEEHHHH
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCC-cccCCeeehhhH
Confidence 58888888888777777767678899999 478876655443
No 228
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=31.96 E-value=1.1e+02 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=37.0
Q ss_pred ecHHHHHHHHHHHHHHHHhHcC--CCHHHHHHHHHhcCCChhhhhhhhhhcH
Q 014105 70 LTEADIRQRQEEDITRISTVLS--ISKVAASILLRFYNWSVSKVHDEWFADE 119 (430)
Q Consensus 70 l~~~~i~~~~~~~i~~v~~~l~--i~~~~a~~LL~~~~W~~~~l~~~~~~~~ 119 (430)
|+..+ +.++..=+.++.+|+| ||.....-....+++|+++.++.++..+
T Consensus 26 Ls~~d-~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~ 76 (83)
T 1ufz_A 26 LSEID-QARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQD 76 (83)
T ss_dssp CCHHH-HHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 44433 4566777888889988 5777777777899999999999887643
No 229
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.68 E-value=21 Score=26.93 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=24.6
Q ss_pred CceecCCCCCCceEEeecCCCCceEEe-cCCCccccccCC
Q 014105 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 267 (430)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 267 (430)
....|..++|.... ...+.| .|+..||..++.
T Consensus 24 ~~~~C~~~~Ck~~~-------~l~f~C~~C~~~FC~~HR~ 56 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE-------LVAVICPYCEKNFCLRHRH 56 (86)
T ss_dssp CCEECCSTTCCCEE-------SSCEECTTTCCEECGGGCS
T ss_pred CCCCCCCcCCCCCC-------ccceECCCCCcccccccCC
Confidence 34679999998652 245799 799999998873
No 230
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=31.64 E-value=43 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=21.6
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCcccc
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCW 263 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~ 263 (430)
+.|| +|...-..- +.....|.| .|+...|.
T Consensus 8 VKCp--~C~niq~VF-ShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIF-DHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEE-SSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEE-ecCceEEEcccCCCEEee
Confidence 5788 598765443 345678999 89999884
No 231
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.55 E-value=27 Score=29.60 Aligned_cols=36 Identities=28% Similarity=0.655 Sum_probs=25.9
Q ss_pred CCCccccccccccccCCCeeecc---CCCcccHHHHHHHHHh
Q 014105 138 DGEEMTCGICFENYPSDRLLAAA---CGHPFCSSCWTGYIST 176 (430)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~---CgH~fC~~Cl~~yi~~ 176 (430)
+.....|.||.+. ..++... |...||..|+...+..
T Consensus 76 DG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3456789999864 4555443 8899999999987743
No 232
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=31.06 E-value=27 Score=28.58 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=30.9
Q ss_pred cccCCCCCCCC---chhhHHHhhcChHHHHHHHHHHHHHHHhcCCCceecCCCCCCceE
Q 014105 187 LRCPDPSCGAA---VGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAV 242 (430)
Q Consensus 187 i~CP~~~C~~~---l~~~~i~~ll~~e~~~ky~~~~~~~~v~~~~~~~~CP~p~C~~~i 242 (430)
..|| .|+.. +....|+.++.++.+. +.. ..+.+|++|+|.-+.
T Consensus 2 ~~CP--~Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~-~~y~~C~~~~C~VvY 47 (130)
T 2hu9_A 2 MRCP--ECSTEGWRVLPLTVGAHVKEGLWS----------KIK-GDFYFCSLESCEVVY 47 (130)
T ss_dssp CBCT--TTCCBCEEECHHHHHHHBCGGGGG----------GCC-SCEEECCCTTCSEEE
T ss_pred CcCC--CCCCcCcCccHHHHHHHhhHHHhc----------cCC-CCEEeECCCCCCEEE
Confidence 4699 88874 6778888888765321 223 478999999998554
No 233
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.04 E-value=20 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=15.5
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
-.|..|+..++...| .-|.|. .||+.+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~-~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCR-ECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCS-SSCCCC
T ss_pred EECCCCCCeeecCCC-CceECC-CCCcEE
Confidence 356677666664443 446665 566543
No 234
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=31.03 E-value=65 Score=28.13 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=29.2
Q ss_pred HHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhh
Q 014105 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
.+.|+++.+ .|++...|+..|...+|+++...+..|+
T Consensus 164 eekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 344545433 4899999999999999999998887764
No 235
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.94 E-value=21 Score=27.58 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHhhhcC
Q 014105 164 PFCSSCWTGYISTAIND 180 (430)
Q Consensus 164 ~fC~~Cl~~yi~~~i~~ 180 (430)
-||+.||..|+..+-..
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999887653
No 236
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=30.87 E-value=36 Score=32.63 Aligned_cols=37 Identities=14% Similarity=0.388 Sum_probs=34.3
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
...+.+.|.+-....|...|+.+.|+.++.++.||+.
T Consensus 48 ~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 48 KLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 6778889999999999999999999999999999954
No 237
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=30.81 E-value=23 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCCceecCCCCCCceEEeecCC--CCceEEe-cCCCcc
Q 014105 227 NRKTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYSF 261 (430)
Q Consensus 227 ~~~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~f 261 (430)
...+++||. |++.+.+..+. +...+.| .|++..
T Consensus 21 ~~~~~FCPe--CgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRD--CNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTT--TCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCC--CCCEeeECccCCCceeEEECCCCCCcE
Confidence 346789995 99998765432 3345677 777653
No 238
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.59 E-value=22 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.765 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHhhhcC
Q 014105 164 PFCSSCWTGYISTAIND 180 (430)
Q Consensus 164 ~fC~~Cl~~yi~~~i~~ 180 (430)
-||+.||..|+..+-..
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999876543
No 239
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=30.03 E-value=31 Score=22.66 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=27.7
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
.|.++. -+|.+...|+..|...+||.+...+-+|+.
T Consensus 7 aI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 7 AIERLK-ALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHTTTT-TTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344443 358899999999999999999887766653
No 240
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=29.98 E-value=21 Score=26.32 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=26.0
Q ss_pred CCCCCC-CcceeecCCCCceEecCCCccccccccccccccCC
Q 014105 300 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (430)
Q Consensus 300 k~CP~C-~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (430)
..||.+ +.+++ ++|. .|+...|+.|.. ...|.
T Consensus 19 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~-~~~H~ 51 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCV-SDDQLICALCKL-VGRHR 51 (84)
T ss_dssp CCCSSCSSSCCC-------EEET-TTTEEECHHHHH-TSTTT
T ss_pred CcCcCcCCcccc-------EEcC-CCCceEcccCcC-CCCCC
Confidence 579999 58887 9999 899999999974 23454
No 241
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=29.43 E-value=21 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.797 Sum_probs=15.0
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (430)
...||.|+.+.. .|..|. .||+
T Consensus 30 l~~c~~cG~~~~-----pH~vc~-~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKL-----SHHICP-NCGY 51 (60)
T ss_dssp CEECTTTCCEEC-----TTBCCT-TTCB
T ss_pred ceECCCCCCEeC-----CceEcC-CCCc
Confidence 467899888875 566665 5653
No 242
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=29.38 E-value=25 Score=26.33 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=32.9
Q ss_pred CccccccCCcCCCCCCchhHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 259 YSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 259 ~~fC~~C~~~~H~~~~C~~~~~~~~~~~~e~~~~~~i~~~tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
..+|++|+..-|....|... .+|..|+..-... ..|..+=...+||.|++ ..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~-----~~c~~p~~~~~CYnCG~--~G 56 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKA-----KPKVLPFHTIYCYNCGG--KG 56 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC------------------CCCBCSSSSC--BS
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCCccc-----ccccCCCCCCeecccCC--CC
Confidence 45799999999998888642 3577776542211 11320124579999987 34
Q ss_pred CCCCCCCcccCCch
Q 014105 339 HGERTGGFYACNRY 352 (430)
Q Consensus 339 h~~~~g~~~~C~~~ 352 (430)
|-. ..|+..
T Consensus 57 H~~-----rdC~~~ 65 (83)
T 3nyb_B 57 HFG-----DDCKEK 65 (83)
T ss_dssp SCG-----GGCSSC
T ss_pred cCc-----ccCCcc
Confidence 543 456644
No 243
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=28.87 E-value=74 Score=29.01 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhh
Q 014105 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
+.|.++.+ .+++...|+..|..++|+++..++..+.
T Consensus 217 ~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444433 4899999999999999999999888765
No 244
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.87 E-value=32 Score=26.95 Aligned_cols=9 Identities=33% Similarity=1.379 Sum_probs=7.5
Q ss_pred EEe-cCCCcc
Q 014105 253 VTC-RCSYSF 261 (430)
Q Consensus 253 v~C-~C~~~f 261 (430)
..| .||+.|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 478 899998
No 245
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.61 E-value=1.2e+02 Score=22.12 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=27.6
Q ss_pred HHHHHHHhHcCC-CHHHHHHHHHhcCCChhhhhhhhhhc
Q 014105 81 EDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (430)
Q Consensus 81 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~~~~~~~ 118 (430)
+.|.++.+. +. ....++..|+..+||+++.++..|..
T Consensus 31 ~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 31 QELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 345555543 77 46777899999999999999887753
No 246
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=28.56 E-value=1.3e+02 Score=21.11 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhh
Q 014105 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (430)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~ 115 (430)
|...++.....++..|..|+-||---+|++...+..|
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 4556677777899999999999999999999888765
No 247
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.73 E-value=96 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCC-Chhhhhhhhhh
Q 014105 82 DITRISTVLSISKVAASILLRFYNW-SVSKVHDEWFA 117 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~~~l~~~~~~ 117 (430)
.|.++.+ ++.+...|+..|+..+| |++...+-.|.
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3555555 69999999999999999 99888776654
No 248
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=27.54 E-value=33 Score=21.08 Aligned_cols=16 Identities=31% Similarity=0.918 Sum_probs=12.2
Q ss_pred cccccCCcCCCCCCch
Q 014105 261 FCWNCTEEAHRPVDCD 276 (430)
Q Consensus 261 fC~~C~~~~H~~~~C~ 276 (430)
.|++|++.-|....|.
T Consensus 2 ~C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCR 17 (37)
T ss_dssp CBSSSCCSSCCTTTSS
T ss_pred cccccCCCCcchhhCc
Confidence 5888888888776664
No 249
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=27.15 E-value=61 Score=26.59 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=31.7
Q ss_pred EEecHHHHHHHHHHH-HHHHHhHcCCCHHHHHHHHHhc
Q 014105 68 TVLTEADIRQRQEED-ITRISTVLSISKVAASILLRFY 104 (430)
Q Consensus 68 ~~l~~~~i~~~~~~~-i~~v~~~l~i~~~~a~~LL~~~ 104 (430)
..+++++|.+.+-.+ |++++.-+++++.++...|..+
T Consensus 62 ~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 62 QSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp CCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456999999998655 9999999999999999888654
No 250
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.98 E-value=18 Score=22.22 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=10.7
Q ss_pred CCcccccccccccc
Q 014105 139 GEEMTCGICFENYP 152 (430)
Q Consensus 139 ~~~~~C~IC~e~~~ 152 (430)
++.|.||||+..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 34689999997764
No 251
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.95 E-value=44 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=23.5
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCccccccC
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCT 266 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~ 266 (430)
+-|| +|...-.+- ......|.| .|++..|.-=+
T Consensus 37 VkCp--~C~~~~~VF-ShA~t~V~C~~CgtvL~~PTG 70 (86)
T 3iz6_X 37 VKCQ--GCFNITTVF-SHSQTVVVCPGCQTVLCQPTG 70 (86)
T ss_dssp EECT--TTCCEEEEE-TTCSSCCCCSSSCCCCSCCCS
T ss_pred EECC--CCCCeeEEE-ecCCcEEEccCCCCEeecCCC
Confidence 7898 598765443 345677899 89999885443
No 252
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.77 E-value=21 Score=31.06 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=41.3
Q ss_pred cccccccccccCCC----eeec-cCCCcccHHHHHHHHH--hhhcCCCceeecccCCCCCCCCchhhHHHhhcChHHHHH
Q 014105 142 MTCGICFENYPSDR----LLAA-ACGHPFCSSCWTGYIS--TAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVK 214 (430)
Q Consensus 142 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~Cl~~yi~--~~i~~g~~~~~i~CP~~~C~~~l~~~~i~~ll~~e~~~k 214 (430)
..|+||...+..++ ++.. .|..-|...|..---. ..+.+-+......|| .|...-+.. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 45999998876554 5554 4887888888742111 112110001157899 888765543 444444455444
Q ss_pred HHHHH
Q 014105 215 YNRYF 219 (430)
Q Consensus 215 y~~~~ 219 (430)
+.+++
T Consensus 80 l~~vl 84 (183)
T 3lqh_A 80 LKQVL 84 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 253
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=26.46 E-value=55 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.550 Sum_probs=21.9
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCcccc
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCW 263 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~ 263 (430)
+-|| +|...-.+- ......|.| .|++..|.
T Consensus 33 VkCp--~C~n~q~VF-ShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIF-SNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEE-TTCSSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEE-ecCccEEEccCCCCEEee
Confidence 5788 598765443 345678999 89999884
No 254
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.37 E-value=59 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=21.6
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCcccc
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCW 263 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~ 263 (430)
+.|| +|...-..- ......|.| .|++..|.
T Consensus 16 VkCp--~C~~~q~VF-Sha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVF-SHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEE-SSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEE-ecCCeEEEccCcCCEEec
Confidence 6788 598765443 345678999 89999884
No 255
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.28 E-value=32 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.629 Sum_probs=24.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW 336 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~ 336 (430)
..|+.|+...-- ---.-.|+ .||..||..|....
T Consensus 165 ~~C~~C~~~F~~--~~RrhHCR-~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGV--MTRKHHCR-ACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBT--TBCCEECT-TTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCc--cccccccC-CCcCEeChhhcCCc
Confidence 578888876541 12246788 89999999998643
No 256
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.24 E-value=28 Score=29.32 Aligned_cols=31 Identities=29% Similarity=0.659 Sum_probs=22.6
Q ss_pred CccccccccccccC---CCeeeccCCCcccHHHH
Q 014105 140 EEMTCGICFENYPS---DRLLAAACGHPFCSSCW 170 (430)
Q Consensus 140 ~~~~C~IC~e~~~~---~~~~~l~CgH~fC~~Cl 170 (430)
....|.+|..+|.. ...+-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 36789999998642 12233469999999997
No 257
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.74 E-value=48 Score=30.44 Aligned_cols=30 Identities=20% Similarity=0.446 Sum_probs=25.0
Q ss_pred hcCCCCCCCCcceeecCCCCceEecCCCccc
Q 014105 297 ANSKPCPRCKRPIEKNQGCMHMTCTPPCKFE 327 (430)
Q Consensus 297 ~~tk~CP~C~~~IeK~~GCnhm~C~~~C~~~ 327 (430)
...+-||.|+.+.+...+=-.+.|. .|+..
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~-~C~~~ 134 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCS-HCRER 134 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEES-SSSCE
T ss_pred hcCCccccCCCcCccCCCceeeeCC-CCCCE
Confidence 3568999999999887777889998 79864
No 258
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.71 E-value=35 Score=24.63 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=22.0
Q ss_pred cccccccccccCC--CeeeccCCCcccHHHHHH
Q 014105 142 MTCGICFENYPSD--RLLAAACGHPFCSSCWTG 172 (430)
Q Consensus 142 ~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~ 172 (430)
..|.+|...|... ...--.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3799999877532 222346999999999753
No 259
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.67 E-value=62 Score=30.48 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHHhH
Q 014105 71 TEADIRQRQEEDITRISTV 89 (430)
Q Consensus 71 ~~~~i~~~~~~~i~~v~~~ 89 (430)
.+..+.++-.+.+.+++.-
T Consensus 24 ~~~~lf~~RA~Rl~~LA~~ 42 (309)
T 2fiy_A 24 PSRDLFARRGERLLQLAEG 42 (309)
T ss_dssp CCTTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 4455666666666666544
No 260
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=25.36 E-value=18 Score=27.93 Aligned_cols=32 Identities=6% Similarity=-0.189 Sum_probs=24.7
Q ss_pred CCCCCCCcceeecCCCCceEecCCCcccccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (430)
-.||-|..+.. +.++- .||+.||..|...|-.
T Consensus 30 ~~CpI~~~~m~-----dPV~~--~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 30 FRDPLMDTLMT-----DPVRL--PSGTIMDRSIILRHLL 61 (100)
T ss_dssp TBCTTTCSBCS-----SEEEE--TTTEEEEHHHHHHHTT
T ss_pred hCCcCccCccc-----CCeEC--CCCCEEchHHHHHHHH
Confidence 47999987765 45554 4999999999988854
No 261
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=24.41 E-value=55 Score=23.94 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=22.9
Q ss_pred eecCCCCCCceEEeecCCCCceEEe-cCCCccccccCC
Q 014105 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 267 (430)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 267 (430)
..|..++|... .-..+.| .|+..||..++.
T Consensus 15 ~~Cs~~~C~~~-------dflpf~C~~C~~~FC~~HR~ 45 (75)
T 1wys_A 15 QHCQVQHCRQR-------DFLPFVCDGCSGIFCLEHRS 45 (75)
T ss_dssp CCCSCTTTCCC-------SCCCEECTTTCCEECSTTCS
T ss_pred CCcCcccCCCc-------cceeeECcccCcCcCcccCC
Confidence 57888888753 2346899 799999988874
No 262
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=24.14 E-value=24 Score=22.03 Aligned_cols=16 Identities=31% Similarity=0.845 Sum_probs=10.6
Q ss_pred cccccCCcCCCCCCch
Q 014105 261 FCWNCTEEAHRPVDCD 276 (430)
Q Consensus 261 fC~~C~~~~H~~~~C~ 276 (430)
.|++|++.-|....|.
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4777777777665554
No 263
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.93 E-value=29 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=0.0
Q ss_pred CccccccccccccCCCe---eeccCCCcccHHH
Q 014105 140 EEMTCGICFENYPSDRL---LAAACGHPFCSSC 169 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~---~~l~CgH~fC~~C 169 (430)
....|.+|..++..-.. .-..|.|.+|..|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCccccccCCCcccccCCCCCCCCCCccccccc
No 264
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=23.75 E-value=1.1e+02 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHHhHcCCCHHHHHHHHHhcCCChhhh
Q 014105 81 EDITRISTVLSISKVAASILLRFYNWSVSKV 111 (430)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l 111 (430)
++|.-|++..++|...|.-.|+..++++-..
T Consensus 67 edi~lv~~q~~vs~~~A~~aL~~~~gDiv~A 97 (102)
T 1tr8_A 67 DDIELVMNQTGASREDATRALQETGGDLAEA 97 (102)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHH
Confidence 5667788888999999999999999997543
No 265
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.73 E-value=92 Score=26.06 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=29.5
Q ss_pred cCCCCCCCCcceeecCCCCceEecCCCcccccccccc
Q 014105 298 NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (430)
Q Consensus 298 ~tk~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~ 334 (430)
+.+.|..|..+.-...+. ...|. .|++.+|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~-~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCL-ECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECT-TTCCEECGGGEE
T ss_pred CCccchhhcCccccccCC-CCcCC-CCCchhhccccc
Confidence 457899999998777777 46787 799999999984
No 266
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=23.65 E-value=39 Score=30.59 Aligned_cols=23 Identities=30% Similarity=0.795 Sum_probs=14.4
Q ss_pred CCCCCCCc----ceeecCCCCceEecCCCcc
Q 014105 300 KPCPRCKR----PIEKNQGCMHMTCTPPCKF 326 (430)
Q Consensus 300 k~CP~C~~----~IeK~~GCnhm~C~~~C~~ 326 (430)
-+||.|+. .+- ..| ++.|. +||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~-~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCY-VCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEET-TTCC
T ss_pred CcCCCCCCCCCceEe-CCC--Ceecc-cCCC
Confidence 58999987 333 334 46666 5664
No 267
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.50 E-value=22 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=13.8
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFE 327 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~ 327 (430)
.+.||+|+..+ +=.--.|+ +||+.
T Consensus 14 k~iCpkC~a~~----~~gaw~Cr-KCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATN----PWGAKKCR-KCGYK 37 (51)
T ss_dssp EEECTTTCCEE----CTTCSSCS-SSSSC
T ss_pred CccCCCCCCcC----CCCceecC-CCCCc
Confidence 46899998873 22224455 45554
No 268
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.19 E-value=41 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=20.7
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.-.||.|+..-.|..+-.--.|. .|+..|
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~-~C~~~~ 54 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCS-CCKKTV 54 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCS-SSCCCC
T ss_pred CccCCCCCCceeEecCCCeEECC-CCCCEE
Confidence 36899999887776665555777 676654
No 269
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=23.00 E-value=44 Score=20.64 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=18.3
Q ss_pred CCCCCCcc---eeecCCCCceEecCCCccc
Q 014105 301 PCPRCKRP---IEKNQGCMHMTCTPPCKFE 327 (430)
Q Consensus 301 ~CP~C~~~---IeK~~GCnhm~C~~~C~~~ 327 (430)
.||.|+.| +.|..+=..+.|. .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~-aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCM-ACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEE-TTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhh-cCCCc
Confidence 58888865 4455666778887 68764
No 270
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.48 E-value=1.5e+02 Score=26.21 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=23.8
Q ss_pred ccccccccccccCC--CeeeccCCCcccHHHHHHH
Q 014105 141 EMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (430)
Q Consensus 141 ~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y 173 (430)
...|.+|...|... ...--.||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34899999887532 2333469999999997654
No 271
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.42 E-value=45 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=21.4
Q ss_pred CCCCCCCCcceeecCCCCceEecCCCcccc
Q 014105 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (430)
Q Consensus 299 tk~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (430)
.-.||.|+..-.|..+-.--.|. .|+..|
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~-kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQ-KCGATF 63 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEET-TTCCEE
T ss_pred ccCCCCCCCceeEecCcCeEEcC-CCCCEE
Confidence 36899999887666666656787 677764
No 272
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.10 E-value=46 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=25.8
Q ss_pred CccccccccccccCCCeeeccCCCcccHHHHHHHHHhhh
Q 014105 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAI 178 (430)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~yi~~~i 178 (430)
.=|.|..|-..+.... +...=+..||..|....+....
T Consensus 30 ~CF~C~~C~~~L~~~~-f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIG-FVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp TTSBCSSSCCBCSSSC-CEEETTEEECHHHHHHHHCCCS
T ss_pred cCCEeCCCCCcCCCCc-cEeECCeEECHHHhhhhcCCCC
Confidence 3577888877765432 3345678899999887765543
No 273
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.10 E-value=1.4e+02 Score=21.56 Aligned_cols=36 Identities=6% Similarity=0.014 Sum_probs=27.2
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcC-CChhhhhhhhhhc
Q 014105 82 DITRISTVLSISKVAASILLRFYN-WSVSKVHDEWFAD 118 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~~~~~~~ 118 (430)
.|.++.+ ++.+...|+..|+..+ |+++...+-+|..
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 12 VIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3455555 6999999999998887 6899888766653
No 274
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.08 E-value=28 Score=30.69 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=23.5
Q ss_pred CCccccccccccccCCCeeeccCCCcccHHHHHH
Q 014105 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTG 172 (430)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~ 172 (430)
.....|++|-|.+.....+... |-.+|..|...
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~-g~~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLN-GKPVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEET-TEEECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeC-CcEEChhhhcc
Confidence 3467899999988654444333 77899999753
No 275
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.75 E-value=31 Score=27.76 Aligned_cols=33 Identities=30% Similarity=0.736 Sum_probs=23.2
Q ss_pred CCCCCCCcceeecCCCCceEecCCCccccccccccc
Q 014105 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (430)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~ 335 (430)
..|..|+...--. =-.-.|+ .||..||+.|...
T Consensus 20 ~~C~~C~~~Fs~~--~RkHHCR-~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANT--ARKQTCL-DCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSG--GGCEECT-TTCCEECGGGEEC
T ss_pred CcccCcCCccccc--cccccCC-CCCCeeCHHHhCC
Confidence 5788887765311 1235788 8999999999764
No 276
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.60 E-value=62 Score=29.20 Aligned_cols=22 Identities=23% Similarity=0.795 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCCCCCCc-ceee
Q 014105 289 SENMNWILANSKPCPRCKR-PIEK 311 (430)
Q Consensus 289 ~~~~~~i~~~tk~CP~C~~-~IeK 311 (430)
..+..|+..| --||.|+. +|.+
T Consensus 25 VLTE~Wv~~n-~yCPnCG~~~l~~ 47 (257)
T 4esj_A 25 ILTEDWVYRQ-SYCPNCGNNPLNH 47 (257)
T ss_dssp HHHHHHHHHH-CCCTTTCCSSCEE
T ss_pred hhhHHHHHHC-CcCCCCCChhhhh
Confidence 3466788777 48999998 5643
No 277
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=1.3e+02 Score=19.42 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHhHcCCCHHHHHHHHHhcCCChhhhhhhhhh
Q 014105 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (430)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 117 (430)
.|.++.+ +|.+...|...|+..+ |++...+-.+.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 3455544 5899999999999887 88777665544
No 278
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.52 E-value=77 Score=28.60 Aligned_cols=45 Identities=24% Similarity=0.514 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCceecCCCCCCc--eEEeecCCCCceEEe-cCCCccccccC
Q 014105 217 RYFIRSYVEDNRKTKWCPAPGCDY--AVDFVVGSGNYDVTC-RCSYSFCWNCT 266 (430)
Q Consensus 217 ~~~~~~~v~~~~~~~~CP~p~C~~--~i~~~~~~~~~~v~C-~C~~~fC~~C~ 266 (430)
|.+.+.+|..+ .+||+ |+. .-.+..+....++.| .|+..|=.+=+
T Consensus 24 RVLTE~Wv~~n---~yCPn--CG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk 71 (257)
T 4esj_A 24 RILTEDWVYRQ---SYCPN--CGNNPLNHFENNRPVADFYCNHCSEEFELKSK 71 (257)
T ss_dssp HHHHHHHHHHH---CCCTT--TCCSSCEEC----CCCEEECTTTCCEEEEEEE
T ss_pred hhhhHHHHHHC---CcCCC--CCChhhhhccCCCcccccccCCcchhheeccc
Confidence 44556666654 48996 876 334544444567788 77766655444
Done!