BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014108
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
Length = 393
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 34/371 (9%)
Query: 72 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFT 130
+ RGLV TD+ + ++ E+ S S A R++ VL Y+TPWNS GY++ K+F SKFT
Sbjct: 45 VQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFT 104
Query: 131 HLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK-GDAL-VLPRVVLEAFP----XXXX 183
+SPVW LK +G + + G H+ D GW+ +RK L ++PR++ E +
Sbjct: 105 QISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVL 164
Query: 184 XXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALH 243
K +DG V+E W+ + + R + + L ALH
Sbjct: 165 DSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLS-------QKRVGLIHMLTHLAEALH 217
Query: 244 SVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH 300
L + VI P P +++ F + + L+ +DGFSLMTYD+S H
Sbjct: 218 QAR--------LLALLVIPPAITPGTDQLGM--FTHKEFEQLAPVLDGFSLMTYDYSTAH 267
Query: 301 NPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGGA-ITGREYL 359
PGPNAPL W+ +Q+L P RS KI LG+NFYG D+ S+ + G Y+
Sbjct: 268 QPGPNAPLSWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYATSKDAREPVVGARYI 322
Query: 360 NLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGTGIAIWEI 419
L+ H+P + W+ + EHFF + +H VFYP+L S+ +RLE A+ G G++IWE+
Sbjct: 323 QTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWEL 382
Query: 420 GQGLDYFFDLL 430
GQGLDYF+DLL
Sbjct: 383 GQGLDYFYDLL 393
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 228 RNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEK-----FQPHDFGPVDLQSL 282
R++ F++QL R+R Q V I P + +D+G +
Sbjct: 127 RDLFTGFLRQL----------RDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYG-----GI 171
Query: 283 SDAVDGFSLMTYDFS-GPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYG 341
V+ +M YD+ PGP AP+ I T++ + + +RKI +G+ YG
Sbjct: 172 GAVVNYMFIMAYDWHHAGSEPGPVAPITEIRRTIEFTIA------QVPSRKIIIGVPLYG 225
Query: 342 NDFVLSEGGG----AITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSL 397
D+++ G AI+ + + +++ +Q+ FF +SD+ H V++ +
Sbjct: 226 YDWIIPYQPGTVASAISNQNAIERAMRYQAPIQYSAEYQSPFFRYSDQQGRTHEVWFEGV 285
Query: 398 ISISMRLEEAKLWG-TGIAIWEI 419
S+S +++ + + I W++
Sbjct: 286 RSMSRKMQIVREYRLQAIGAWQL 308
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 23/141 (16%)
Query: 225 PELRNMALEFI---KQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQS 281
PE A +F+ K++ AL S ++ QH L+ V P +K + + L+
Sbjct: 179 PENDQQANDFVLLLKEVRTALDSYSAANAGGQHF-LLTVASPAGPDKIKV-----LHLKD 232
Query: 282 LSDAVDGFSLMTYDFSGP-----------HNPGPNAPLKWISFTLQLLLGSPGIGTRSLA 330
+ +D ++LM YD++G +N N PL F Q L G A
Sbjct: 233 MDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN-PLS-TPFNTQTALDLYRAGGVP-A 289
Query: 331 RKIFLGINFYGNDFVLSEGGG 351
KI LG+ YG F ++G G
Sbjct: 290 NKIVLGMPLYGRSFANTDGPG 310
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 32/174 (18%)
Query: 198 TECKEMEYDGIVLESWSTWTAYGILHD-------PELRNMALEFIKQLGNALHSVNSVRN 250
TE + +E W GI D + NM L ++++ L S ++
Sbjct: 126 TEATRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVL-LLQRVRQELDSYSATYA 184
Query: 251 RKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSG------------ 298
H QL I P P + + L L +D +LM YD++G
Sbjct: 185 NGYHFQLS--IAAPAG----PSHYNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNL 238
Query: 299 -PHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGG 351
P P++ F+ + + + I A KI LG+ YG FV ++G G
Sbjct: 239 YPSTSNPSS----TPFSTKAAVDAY-IAAGVPASKIILGMPIYGRAFVGTDGPG 287
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 278 DLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPL-------------KWISFTLQLLLGSP 322
D+ +S +D SL+TYDF G G ++PL + + L LG+P
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAP 228
Query: 323 GIGTRSLARKIFLGINFYGNDFVL----SEGGGAITGREYLNLLQKHKPALQW 371
A K+ +GI +G F L ++GG I+G K K L +
Sbjct: 229 -------ANKLVMGIPTFGRSFTLASSKTDGGAPISGPGIPGRFTKEKGILAY 274
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 278 DLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPL-------------KWISFTLQLLLGSP 322
D+ +S +D SL+TYDF G G ++PL + + L LG+P
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAP 228
Query: 323 GIGTRSLARKIFLGINFYGNDFVL----SEGGGAITGREYLNLLQKHKPALQW 371
A K+ +GI +G F L ++GG I+G K K L +
Sbjct: 229 -------ANKLVMGIPTFGRSFTLASSKTDGGAPISGPGIPGRFTKEKGILAY 274
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 23/141 (16%)
Query: 225 PELRNMALEFI---KQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQS 281
PE A +F+ +++ AL S ++ QH L+ V P +K + + L+
Sbjct: 141 PENDQQANDFVLLLREVRTALDSYSAANAGGQHF-LLTVASPAGPDKIKV-----LHLKD 194
Query: 282 LSDAVDGFSLMTYDFSGP-----------HNPGPNAPLKWISFTLQLLLGSPGIGTRSLA 330
+ +D ++LM YD++G +N N PL F Q L G A
Sbjct: 195 MDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN-PLS-TPFNTQTALDLYRAGGVP-A 251
Query: 331 RKIFLGINFYGNDFVLSEGGG 351
KI LG+ YG F ++G G
Sbjct: 252 NKIVLGMPLYGRSFANTDGPG 272
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 317 LLLGSPGIGTRSLARKI-----FLGINFYGNDFV-LSEGGGAITGREYLNLLQKHKPALQ 370
LL+G PG+G LAR + I G+DFV + G GA R+ ++H P +
Sbjct: 68 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127
Query: 371 W 371
+
Sbjct: 128 F 128
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 279 LQSLSDAVDGFSLMTYDFSGPH-NPGPNAPLKWISFTLQLLLGSPGIGTRSLA----RKI 333
++SL+ +D +LM YDF GP+ +P + + + GS GI A +K+
Sbjct: 169 VESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKL 228
Query: 334 FLGINFYG 341
LGI FYG
Sbjct: 229 VLGIPFYG 236
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 279 LQSLSDAVDGFSLMTYDFSGPH-NPGPNAPLKWISFTLQLLLGSPGIGTRSLA----RKI 333
++SL+ +D +LM YDF GP+ +P + + + GS GI A +K+
Sbjct: 169 VESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKL 228
Query: 334 FLGINFYG 341
LGI FYG
Sbjct: 229 VLGIPFYG 236
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 317 LLLGSPGIGTRSLARKI-----FLGINFYGNDFV-LSEGGGAITGREYLNLLQKHKPALQ 370
LL+G PG+G LAR + I G+DFV + G GA R+ ++H P +
Sbjct: 77 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136
Query: 371 W 371
+
Sbjct: 137 F 137
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 317 LLLGSPGIGTRSLARKI-----FLGINFYGNDFV-LSEGGGAITGREYLNLLQKHKPALQ 370
LL+G PG+G LAR + I G+DFV + G GA R+ ++H P +
Sbjct: 53 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112
Query: 371 W 371
+
Sbjct: 113 F 113
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 317 LLLGSPGIGTRSLARKI-----FLGINFYGNDFV-LSEGGGAITGREYLNLLQKHKPALQ 370
LL+G PG+G LAR + I G+DFV + G GA R+ ++H P +
Sbjct: 77 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136
Query: 371 W 371
+
Sbjct: 137 F 137
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 277 VDLQSLSDAVDGFSLMTYDFSG----------PHNPGPNAPLKWI--SFTLQLLLGSPG- 323
+L ++ VD ++MTYDF+G P N P A + + T + G+ G
Sbjct: 230 TELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGH 289
Query: 324 IGTRSLARKIFLGINFYG 341
+ A K+ LG+ FYG
Sbjct: 290 LDAGVPAAKLVLGVPFYG 307
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 26/113 (23%)
Query: 278 DLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPL-------------KWISFTLQLLLGSP 322
D+ +S +D SL+TYDF G G ++PL + + L LG+P
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAP 228
Query: 323 GIGTRSLARKIFLGINFYGNDFVLSEG----GGAITGREYLNLLQKHKPALQW 371
A K+ +GI +G F L+ G I+G K K L +
Sbjct: 229 -------ANKLVMGIPTFGRSFTLASSKTDVGAPISGPGIPGRFTKEKGILAY 274
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 278 DLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPL-------------KWISFTLQLLLGSP 322
D+ +S +D SL+TYDF G G ++PL + + L LG+P
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAP 228
Query: 323 GIGTRSLARKIFLGINFYGNDFVLS 347
A K+ +GI +G F L+
Sbjct: 229 -------ANKLVMGIPTFGRSFTLA 246
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 278 DLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPL-------------KWISFTLQLLLGSP 322
D+ +S +D SL+TYDF G G ++PL + + L LG+P
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAP 228
Query: 323 GIGTRSLARKIFLGINFYGNDFVLS 347
A K+ +GI +G F L+
Sbjct: 229 -------ANKLVMGIPTFGKSFTLA 246
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 278 DLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPL-------------KWISFTLQLLLGSP 322
D+ +S +D SL+TYDF G G ++PL + + L LG+P
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAP 228
Query: 323 GIGTRSLARKIFLGINFYGNDFVLS 347
A K+ +GI +G F L+
Sbjct: 229 -------ANKLVMGIPTFGRSFTLA 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,730,949
Number of Sequences: 62578
Number of extensions: 504478
Number of successful extensions: 1482
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1473
Number of HSP's gapped (non-prelim): 23
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)