Query 014108
Match_columns 430
No_of_seqs 284 out of 1629
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2091 Predicted member of gl 100.0 5.6E-76 1.2E-80 551.9 28.4 380 11-430 6-392 (392)
2 cd02876 GH18_SI-CLP Stabilin-1 100.0 9.3E-68 2E-72 525.4 33.2 311 103-430 1-318 (318)
3 cd02874 GH18_CFLE_spore_hydrol 100.0 8.8E-62 1.9E-66 481.6 34.6 298 106-430 3-313 (313)
4 cd06549 GH18_trifunctional GH1 100.0 2.6E-59 5.6E-64 460.4 31.4 285 106-427 1-298 (298)
5 COG3858 Predicted glycosyl hyd 100.0 8.5E-59 1.8E-63 455.3 29.6 353 47-430 38-418 (423)
6 cd02875 GH18_chitobiase Chitob 100.0 6.8E-52 1.5E-56 416.8 32.2 278 103-423 34-340 (358)
7 cd02872 GH18_chitolectin_chito 100.0 6.2E-52 1.3E-56 419.1 29.8 291 107-424 1-343 (362)
8 smart00636 Glyco_18 Glycosyl h 100.0 1.2E-51 2.7E-56 412.3 29.5 293 106-422 1-334 (334)
9 cd02879 GH18_plant_chitinase_c 100.0 1.7E-51 3.7E-56 405.0 29.9 275 105-425 3-296 (299)
10 cd06548 GH18_chitinase The GH1 100.0 2.5E-49 5.4E-54 393.9 28.1 277 107-422 1-322 (322)
11 cd02873 GH18_IDGF The IDGF's ( 100.0 5.2E-48 1.1E-52 395.5 31.8 295 106-423 1-393 (413)
12 cd02878 GH18_zymocin_alpha Zym 100.0 1.4E-47 3E-52 384.4 30.9 284 106-422 1-345 (345)
13 COG3325 ChiA Chitinase [Carboh 100.0 9.6E-47 2.1E-51 371.3 22.3 300 105-423 38-424 (441)
14 KOG2806 Chitinase [Carbohydrat 100.0 1.2E-44 2.5E-49 372.1 29.2 303 100-425 53-400 (432)
15 PF00704 Glyco_hydro_18: Glyco 100.0 4.9E-45 1.1E-49 365.0 21.6 295 105-422 1-343 (343)
16 cd06545 GH18_3CO4_chitinase Th 100.0 3.9E-43 8.5E-48 338.0 24.2 240 107-429 1-249 (253)
17 cd00598 GH18_chitinase-like Th 100.0 1.5E-31 3.3E-36 249.5 20.1 201 107-422 1-210 (210)
18 cd06546 GH18_CTS3_chitinase GH 99.9 7.8E-22 1.7E-26 189.9 21.4 196 106-339 1-217 (256)
19 cd02871 GH18_chitinase_D-like 99.9 3.6E-21 7.9E-26 190.8 25.4 241 105-363 1-267 (312)
20 cd06544 GH18_narbonin Narbonin 99.9 8.5E-22 1.8E-26 188.9 19.5 192 120-345 14-222 (253)
21 cd06542 GH18_EndoS-like Endo-b 99.8 2.5E-19 5.3E-24 172.7 19.4 200 106-342 2-208 (255)
22 cd06543 GH18_PF-ChiA-like PF-C 99.7 3.2E-16 7E-21 153.5 19.9 152 126-299 23-184 (294)
23 cd02877 GH18_hevamine_XipI_cla 99.6 3.6E-14 7.8E-19 138.1 17.4 150 157-341 63-230 (280)
24 cd06547 GH85_ENGase Endo-beta- 99.0 1E-08 2.3E-13 102.5 14.7 159 155-345 48-216 (339)
25 COG3469 Chitinase [Carbohydrat 98.8 1.4E-07 3E-12 88.1 13.0 218 105-339 26-266 (332)
26 PF03644 Glyco_hydro_85: Glyco 98.2 1.1E-05 2.3E-10 80.1 10.5 157 155-343 44-209 (311)
27 PF02638 DUF187: Glycosyl hydr 97.7 0.00025 5.5E-09 70.4 10.0 141 184-343 134-300 (311)
28 PF11340 DUF3142: Protein of u 97.6 0.00059 1.3E-08 61.7 11.0 118 185-345 22-141 (181)
29 KOG2331 Predicted glycosylhydr 97.5 0.00082 1.8E-08 67.4 10.9 173 155-367 113-293 (526)
30 PF13200 DUF4015: Putative gly 96.9 0.023 4.9E-07 56.4 13.7 134 156-299 64-231 (316)
31 PF01476 LysM: LysM domain; I 96.5 0.0025 5.4E-08 43.8 2.8 29 61-93 1-29 (44)
32 PRK14125 cell division suppres 96.1 0.0021 4.5E-08 53.2 1.1 36 57-96 35-78 (103)
33 KOG4701 Chitinase [Cell wall/m 95.9 0.36 7.8E-06 48.3 15.3 171 162-373 99-293 (568)
34 cd00118 LysM Lysin domain, fou 94.0 0.072 1.6E-06 35.3 3.5 30 60-93 2-31 (46)
35 TIGR02899 spore_safA spore coa 94.0 0.047 1E-06 36.8 2.5 28 63-94 1-28 (44)
36 PRK14582 pgaB outer membrane N 93.9 0.88 1.9E-05 49.8 13.1 164 185-366 439-637 (671)
37 smart00257 LysM Lysin motif. 92.1 0.17 3.7E-06 33.0 3.0 28 61-92 2-29 (44)
38 PRK10871 nlpD lipoprotein NlpD 91.1 0.26 5.6E-06 48.9 4.3 36 58-97 60-95 (319)
39 PRK10783 mltD membrane-bound l 90.8 0.24 5.3E-06 51.8 4.0 34 58-95 402-435 (456)
40 PF14883 GHL13: Hypothetical g 90.6 5.4 0.00012 39.0 12.6 160 185-367 117-288 (294)
41 PF04225 OapA: Opacity-associa 90.5 0.25 5.4E-06 39.4 2.9 51 59-113 3-54 (85)
42 TIGR02907 spore_VI_D stage VI 90.1 0.3 6.6E-06 48.3 3.7 35 56-94 291-325 (338)
43 COG4724 Endo-beta-N-acetylgluc 87.3 1.4 3E-05 44.6 6.1 82 156-243 130-220 (553)
44 TIGR01370 cysRS possible cyste 87.1 8.7 0.00019 38.3 11.7 87 155-245 83-203 (315)
45 PRK06347 autolysin; Reviewed 86.1 0.74 1.6E-05 49.7 3.9 34 58-95 547-580 (592)
46 COG1388 LytE FOG: LysM repeat 85.9 0.81 1.7E-05 38.7 3.3 35 58-96 66-100 (124)
47 PRK14581 hmsF outer membrane N 84.6 9.5 0.00021 41.9 11.5 162 185-363 439-632 (672)
48 PRK13914 invasion associated s 83.6 1 2.2E-05 47.1 3.5 82 58-143 27-129 (481)
49 PRK13914 invasion associated s 82.3 1.4 3.1E-05 46.0 3.9 34 58-95 199-232 (481)
50 PRK06347 autolysin; Reviewed 81.1 1.6 3.4E-05 47.3 3.8 33 59-95 480-512 (592)
51 COG1649 Uncharacterized protei 79.7 5.2 0.00011 41.3 6.9 135 153-296 115-309 (418)
52 PRK14706 glycogen branching en 79.7 13 0.00029 40.7 10.5 90 156-245 220-348 (639)
53 COG1306 Uncharacterized conser 79.5 5.7 0.00012 38.9 6.6 94 193-299 198-301 (400)
54 PF14871 GHL6: Hypothetical gl 79.2 6 0.00013 34.2 6.2 57 154-211 45-131 (132)
55 TIGR02402 trehalose_TreZ malto 78.7 6.5 0.00014 42.2 7.6 80 156-245 163-268 (542)
56 PRK12568 glycogen branching en 78.5 16 0.00035 40.6 10.6 90 156-245 322-452 (730)
57 PF13199 Glyco_hydro_66: Glyco 77.7 5.1 0.00011 43.1 6.3 61 184-244 238-301 (559)
58 PF07364 DUF1485: Protein of u 77.3 15 0.00032 36.3 9.1 148 156-342 48-199 (292)
59 TIGR01515 branching_enzym alph 77.2 19 0.00041 39.3 10.8 57 156-212 209-296 (613)
60 TIGR02104 pulA_typeI pullulana 77.1 18 0.0004 39.4 10.6 76 156-245 232-339 (605)
61 PRK11198 LysM domain/BON super 76.3 2.7 5.7E-05 37.1 3.2 32 57-92 94-128 (147)
62 PRK05402 glycogen branching en 76.1 22 0.00047 39.7 11.0 89 156-245 318-448 (726)
63 PRK12313 glycogen branching en 74.3 22 0.00047 39.0 10.4 89 156-245 223-352 (633)
64 cd04735 OYE_like_4_FMN Old yel 71.4 52 0.0011 33.2 11.6 100 188-298 142-261 (353)
65 PRK10783 mltD membrane-bound l 71.1 4.3 9.4E-05 42.6 3.8 34 58-95 343-376 (456)
66 KOG1552 Predicted alpha/beta h 67.4 7.2 0.00016 37.5 4.1 43 288-335 88-134 (258)
67 COG2874 FlaH Predicted ATPases 65.7 23 0.00049 33.4 6.9 69 181-264 100-168 (235)
68 PRK14705 glycogen branching en 64.1 41 0.00089 39.7 10.1 89 156-245 818-948 (1224)
69 PF08924 DUF1906: Domain of un 61.5 86 0.0019 27.1 9.5 85 154-244 39-127 (136)
70 PRK03705 glycogen debranching 61.4 29 0.00064 38.2 8.0 57 156-212 245-337 (658)
71 PRK10605 N-ethylmaleimide redu 60.0 1E+02 0.0022 31.3 11.2 23 188-211 157-179 (362)
72 PLN02960 alpha-amylase 58.6 58 0.0013 37.0 9.6 87 156-245 469-601 (897)
73 TIGR00262 trpA tryptophan synt 57.4 1.1E+02 0.0024 29.4 10.4 64 197-294 108-172 (256)
74 PF15145 DUF4577: Domain of un 54.5 2 4.4E-05 35.5 -1.8 59 32-91 55-113 (128)
75 PRK08091 ribulose-phosphate 3- 54.4 47 0.001 31.5 7.1 76 180-296 74-151 (228)
76 PRK08005 epimerase; Validated 54.0 44 0.00095 31.3 6.8 93 155-296 46-139 (210)
77 cd04747 OYE_like_5_FMN Old yel 53.4 2.1E+02 0.0046 29.0 12.2 23 188-211 142-164 (361)
78 PF00659 POLO_box: POLO box du 53.2 26 0.00056 26.2 4.2 40 367-408 24-68 (68)
79 PF00834 Ribul_P_3_epim: Ribul 53.1 30 0.00065 32.1 5.5 93 155-296 45-138 (201)
80 cd04724 Tryptophan_synthase_al 51.9 54 0.0012 31.2 7.2 65 196-295 96-162 (242)
81 PF07582 AP_endonuc_2_N: AP en 50.6 26 0.00056 25.5 3.6 20 194-214 3-23 (55)
82 TIGR01163 rpe ribulose-phospha 49.4 94 0.002 28.3 8.3 66 197-296 72-137 (210)
83 TIGR02103 pullul_strch alpha-1 48.9 36 0.00077 38.9 6.2 48 184-245 469-516 (898)
84 cd04734 OYE_like_3_FMN Old yel 48.9 95 0.0021 31.2 8.8 95 187-294 138-251 (343)
85 PRK08883 ribulose-phosphate 3- 47.5 59 0.0013 30.6 6.6 94 155-297 45-140 (220)
86 CHL00200 trpA tryptophan synth 47.4 67 0.0015 31.1 7.2 96 197-337 112-209 (263)
87 KOG3111 D-ribulose-5-phosphate 47.2 62 0.0013 29.9 6.3 75 180-295 70-144 (224)
88 cd00429 RPE Ribulose-5-phospha 46.6 1.3E+02 0.0028 27.3 8.7 66 197-296 73-138 (211)
89 TIGR02102 pullulan_Gpos pullul 46.4 1E+02 0.0023 36.1 9.5 57 156-212 558-643 (1111)
90 PLN03244 alpha-amylase; Provis 46.0 1.2E+02 0.0025 34.3 9.3 56 156-211 444-531 (872)
91 PF02065 Melibiase: Melibiase; 45.5 81 0.0018 32.5 7.8 61 183-244 162-227 (394)
92 PRK05581 ribulose-phosphate 3- 44.6 1.3E+02 0.0028 27.6 8.5 34 254-296 109-142 (220)
93 PF05763 DUF835: Protein of un 44.0 51 0.0011 28.6 5.2 68 183-264 54-121 (136)
94 TIGR02100 glgX_debranch glycog 43.2 67 0.0014 35.7 7.1 29 184-212 314-342 (688)
95 PLN02803 beta-amylase 43.2 39 0.00084 35.9 5.0 44 193-241 109-156 (548)
96 PLN02411 12-oxophytodienoate r 42.9 1.8E+02 0.0038 30.0 9.8 23 188-211 163-185 (391)
97 PRK13125 trpA tryptophan synth 42.7 97 0.0021 29.4 7.4 68 197-295 94-161 (244)
98 COG1646 Predicted phosphate-bi 42.5 43 0.00093 31.8 4.7 82 178-296 16-97 (240)
99 PF14885 GHL15: Hypothetical g 42.5 32 0.00069 27.0 3.3 31 182-212 45-75 (79)
100 PLN02161 beta-amylase 41.9 42 0.00091 35.5 5.0 44 193-241 119-166 (531)
101 PLN02705 beta-amylase 40.5 43 0.00092 36.2 4.8 43 194-241 271-317 (681)
102 PLN00197 beta-amylase; Provisi 40.5 45 0.00098 35.6 5.0 43 194-241 130-176 (573)
103 PF14307 Glyco_tran_WbsX: Glyc 40.3 30 0.00065 34.9 3.6 26 395-420 55-81 (345)
104 cd04733 OYE_like_2_FMN Old yel 39.3 1.4E+02 0.0031 29.8 8.4 93 188-295 147-259 (338)
105 COG1501 Alpha-glucosidases, fa 39.0 81 0.0017 35.5 7.0 135 108-265 201-345 (772)
106 cd02933 OYE_like_FMN Old yello 38.9 2.5E+02 0.0054 28.2 10.0 23 188-211 150-172 (338)
107 cd06418 GH25_BacA-like BacA is 38.7 3.3E+02 0.0072 25.4 11.2 94 154-262 53-149 (212)
108 PRK08745 ribulose-phosphate 3- 38.6 1.9E+02 0.0041 27.3 8.6 94 155-297 49-144 (223)
109 PLN02334 ribulose-phosphate 3- 38.3 1.7E+02 0.0038 27.3 8.3 68 197-296 81-150 (229)
110 PLN02447 1,4-alpha-glucan-bran 37.3 75 0.0016 35.6 6.3 89 156-245 303-436 (758)
111 PRK09505 malS alpha-amylase; R 36.9 57 0.0012 36.2 5.3 30 183-212 433-462 (683)
112 PLN02801 beta-amylase 36.5 56 0.0012 34.5 4.9 44 193-241 39-86 (517)
113 PRK11649 putative peptidase; P 36.4 36 0.00077 35.6 3.6 28 59-90 96-123 (439)
114 PRK09613 thiH thiamine biosynt 35.4 3.4E+02 0.0074 28.7 10.6 111 199-339 126-246 (469)
115 COG0036 Rpe Pentose-5-phosphat 34.9 1.4E+02 0.003 28.2 6.8 74 181-295 68-141 (220)
116 COG2342 Predicted extracellula 34.9 1.1E+02 0.0024 30.0 6.2 54 192-245 127-183 (300)
117 cd02929 TMADH_HD_FMN Trimethyl 34.6 2.2E+02 0.0048 29.0 8.9 23 188-211 148-170 (370)
118 cd02932 OYE_YqiM_FMN Old yello 34.0 2.3E+02 0.005 28.2 8.9 64 188-263 152-230 (336)
119 PLN02905 beta-amylase 33.9 63 0.0014 35.1 4.8 43 194-241 289-335 (702)
120 PRK09722 allulose-6-phosphate 33.7 1.5E+02 0.0032 28.1 7.0 94 155-296 47-141 (229)
121 PF14587 Glyco_hydr_30_2: O-Gl 33.6 1.1E+02 0.0024 31.3 6.5 86 158-245 109-216 (384)
122 COG5185 HEC1 Protein involved 33.3 40 0.00086 35.2 3.2 57 179-244 96-152 (622)
123 PF04914 DltD_C: DltD C-termin 33.2 1.1E+02 0.0024 26.4 5.5 51 158-210 41-95 (130)
124 PF06745 KaiC: KaiC; InterPro 32.6 57 0.0012 30.2 4.0 91 188-299 99-190 (226)
125 PTZ00334 trans-sialidase; Prov 32.3 11 0.00023 42.1 -1.1 35 6-45 16-50 (780)
126 PF00809 Pterin_bind: Pterin b 32.0 2E+02 0.0044 26.6 7.6 81 155-241 105-194 (210)
127 COG3410 Uncharacterized conser 30.8 1.2E+02 0.0026 27.3 5.3 47 182-238 143-189 (191)
128 PRK14057 epimerase; Provisiona 29.9 1.2E+02 0.0026 29.3 5.7 84 181-296 82-165 (254)
129 cd02930 DCR_FMN 2,4-dienoyl-Co 29.8 2.6E+02 0.0055 28.2 8.4 64 188-263 135-213 (353)
130 TIGR03849 arch_ComA phosphosul 29.4 2.8E+02 0.0061 26.5 8.0 170 121-339 17-194 (237)
131 PLN02591 tryptophan synthase 29.1 4.8E+02 0.01 25.0 9.7 97 197-337 99-196 (250)
132 COG3170 FimV Tfp pilus assembl 28.8 33 0.00072 37.6 1.9 34 57-90 187-220 (755)
133 COG0411 LivG ABC-type branched 28.7 94 0.002 29.9 4.6 46 224-295 181-226 (250)
134 PLN02877 alpha-amylase/limit d 28.4 1.5E+02 0.0033 34.1 7.1 27 186-212 534-560 (970)
135 PF00128 Alpha-amylase: Alpha 27.2 1.5E+02 0.0032 28.2 6.0 46 184-244 142-187 (316)
136 PRK10785 maltodextrin glucosid 26.5 95 0.0021 33.8 4.9 56 184-245 303-363 (598)
137 PF04339 DUF482: Protein of un 26.4 3.7E+02 0.0081 27.4 8.9 78 127-211 53-140 (370)
138 PRK11177 phosphoenolpyruvate-p 26.2 2.5E+02 0.0054 30.5 8.0 89 190-298 368-458 (575)
139 PF01373 Glyco_hydro_14: Glyco 26.1 59 0.0013 33.5 3.0 47 192-240 17-64 (402)
140 cd01122 GP4d_helicase GP4d_hel 25.0 4.9E+02 0.011 24.6 9.2 98 190-296 126-230 (271)
141 COG3142 CutC Uncharacterized p 25.0 3.2E+02 0.0069 26.1 7.3 55 154-211 38-93 (241)
142 PRK09441 cytoplasmic alpha-amy 24.2 1.8E+02 0.0039 30.6 6.4 29 184-212 206-234 (479)
143 PRK08255 salicylyl-CoA 5-hydro 24.1 3.3E+02 0.0072 30.6 8.8 23 188-211 549-571 (765)
144 TIGR02456 treS_nterm trehalose 24.1 1.4E+02 0.0031 31.9 5.7 57 183-244 170-229 (539)
145 cd07355 HN_L-delphilin-R2_like 23.6 1E+02 0.0022 24.1 3.2 50 182-238 14-63 (80)
146 PF00724 Oxidored_FMN: NADH:fl 22.8 3.8E+02 0.0082 26.8 8.2 64 189-264 148-226 (341)
147 COG0296 GlgB 1,4-alpha-glucan 22.8 1.6E+02 0.0034 32.3 5.6 90 156-245 217-347 (628)
148 COG4281 ACB Acyl-CoA-binding p 22.6 76 0.0017 24.7 2.3 29 213-241 56-84 (87)
149 PRK13840 sucrose phosphorylase 22.0 2E+02 0.0042 30.7 6.0 56 183-244 166-225 (495)
150 PRK10550 tRNA-dihydrouridine s 21.9 4.9E+02 0.011 25.8 8.6 56 199-263 83-142 (312)
151 PF12876 Cellulase-like: Sugar 21.8 1.3E+02 0.0027 23.7 3.6 78 200-294 2-88 (88)
152 TIGR03234 OH-pyruv-isom hydrox 21.6 1.5E+02 0.0032 27.9 4.8 19 193-211 16-34 (254)
153 PF00290 Trp_syntA: Tryptophan 21.6 5.7E+02 0.012 24.7 8.7 125 194-364 105-235 (259)
154 cd02931 ER_like_FMN Enoate red 21.4 4E+02 0.0087 27.2 8.1 23 188-211 148-170 (382)
155 PRK11572 copper homeostasis pr 21.3 7E+02 0.015 24.0 9.1 55 154-211 38-93 (248)
156 cd06595 GH31_xylosidase_XylS-l 21.2 1.4E+02 0.0031 29.1 4.6 57 193-263 27-96 (292)
157 PF10354 DUF2431: Domain of un 21.2 5.2E+02 0.011 23.0 7.9 109 156-303 43-160 (166)
158 cd00019 AP2Ec AP endonuclease 20.9 1.2E+02 0.0025 29.2 3.9 19 193-211 12-30 (279)
159 cd06589 GH31 The enzymes of gl 20.5 2.2E+02 0.0048 27.3 5.8 46 156-212 69-114 (265)
160 PF02896 PEP-utilizers_C: PEP- 20.4 1.9E+02 0.0041 28.5 5.2 67 219-296 142-208 (293)
No 1
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-76 Score=551.88 Aligned_cols=380 Identities=42% Similarity=0.723 Sum_probs=335.3
Q ss_pred CCCCCCchhhhhhhhhhcccCccccccceeEEeeehhhhhhheeeeeeEEeeccCCCchhHHHHhCcccCCCCHHHHHHH
Q 014108 11 PSPGRPKNRVESAARLDQFSDSASDRKLITIFVIFFIVIPTVSVLLYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTE 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~ 90 (430)
-+-.|+.+..++.|+..+ .|+++++ +..++++.. +.-|- .|+++|||..++..++|+.+
T Consensus 6 ~~v~r~~d~~stv~~~l~----dsd~~l~-----------a~~~~~~k~----~f~D~--~vqd~glv~~dl~akeiv~e 64 (392)
T KOG2091|consen 6 LAVQRLFDHFSTVSMTLN----DSDILLL-----------AFKVVSAKF----DFKDL--KVQDLGLVSPDLIAKEIVLE 64 (392)
T ss_pred HHHHHHHhhcchhHHhhh----hhhHHHH-----------hhHHHHhhc----Ccccc--cHhhcCccCCCchHHHHHHh
Confidence 344455666677777654 4556555 222333333 33343 46799999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHh--CCCc
Q 014108 91 NSKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK--GDAL 168 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~--~~~k 168 (430)
|..++...+.++|++.|+|||||||++||++++++++|||||||+|+++..+|+.+.+.|.||+|++||.++|+ ++++
T Consensus 65 hr~k~se~~~r~f~~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid~gwiralRk~~~~l~ 144 (392)
T KOG2091|consen 65 HRGKLSEEPLRHFGGTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDIDPGWIRALRKSGKDLH 144 (392)
T ss_pred cccccccCcccccCCceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccCChHHHHHHHHhCCCce
Confidence 98887776689999999999999999999999999999999999999999999989999999999999999988 5689
Q ss_pred EEeEEeecCCch----hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014108 169 VLPRVVLEAFPK----ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (430)
Q Consensus 169 v~p~v~~~~~~~----~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~ 244 (430)
++||+.++.|+. +++.+++.|++..+.++++|+++||||+++|.|++|.+. + .| .....|+++|.++||+
T Consensus 145 ivPR~~fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~--i---~d-~~al~~v~hl~k~Lhk 218 (392)
T KOG2091|consen 145 IVPRFYFDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADV--I---AD-KDALELVEHLGKALHK 218 (392)
T ss_pred eeceehhhhccchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHH--H---hh-hHHHHHHHHHHHHHHH
Confidence 999999999984 899999999999999999999999999999999998653 1 22 3456799999999997
Q ss_pred ccccccCCcceEEEEEECC-CCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCC
Q 014108 245 VNSVRNRKQHLQLVYVIGP-PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPG 323 (430)
Q Consensus 245 ~~~~~~~~~~~~lsvavpp-~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~ 323 (430)
+.+++.+++|| ...++++...++..|++.|.+.+|.|++|||||+.++.|||+||+.|++.|++++...
T Consensus 219 --------q~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~wi~~~l~~l~~~-- 288 (392)
T KOG2091|consen 219 --------QELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEWIRHCLHHLGGS-- 288 (392)
T ss_pred --------hheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHHHHHHHHHhCCc--
Confidence 58999999999 4556667777899999999999999999999999988999999999999999999863
Q ss_pred CCCCCCCCcEEEeecccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHH
Q 014108 324 IGTRSLARKIFLGINFYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMR 403 (430)
Q Consensus 324 ~~~~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K 403 (430)
...+.||++||+|||+++...+|+++|++.+|+++++.+++...||+++.||+|.|++++..+|.|+||++.||+.|
T Consensus 289 ---s~~r~KiLlGlNFYG~d~~~gdg~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~R 365 (392)
T KOG2091|consen 289 ---SAKRPKILLGLNFYGNDFNLGDGGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELR 365 (392)
T ss_pred ---cccccceeEeeeccccccccCCCCCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHHHH
Confidence 35689999999999999998778999999999999999999999999999999999876677899999999999999
Q ss_pred HHHHHHcCCeEEEEEcCCCCchhhhcC
Q 014108 404 LEEAKLWGTGIAIWEIGQGLDYFFDLL 430 (430)
Q Consensus 404 ~~~a~~~glGv~iW~Lg~d~~~f~dlL 430 (430)
+++|+++|.||+||++||++|||+|||
T Consensus 366 i~lA~~~gvgISIWe~GqGLDYF~dLl 392 (392)
T KOG2091|consen 366 IELARELGVGISIWEYGQGLDYFTDLL 392 (392)
T ss_pred HHHHHHhCCceEeeeccCchhhHhhcC
Confidence 999999999999999999999999997
No 2
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=9.3e-68 Score=525.37 Aligned_cols=311 Identities=51% Similarity=0.960 Sum_probs=278.2
Q ss_pred CCccEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHh--CCCcEEeEEeecCCc-
Q 014108 103 YTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK--GDALVLPRVVLEAFP- 179 (430)
Q Consensus 103 ~~~~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~--~~~kv~p~v~~~~~~- 179 (430)
|+++++||+++|+..+|.+++++.++||||+|+|+.++++|+.+.+.|.++.+..++..+|+ +++||+|+|+++||+
T Consensus 1 ~~~~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~~~~~~~lk~~~~~lkvlp~i~~gg~~~ 80 (318)
T cd02876 1 FQGPVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDIDKGWIEEVRKANKNIKILPRVLFEGWSY 80 (318)
T ss_pred CCCceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchhhHHHHHHHhhCCCcEEEeEEEECCCCH
Confidence 45789999999999999999999999999999999999999877777777777788888887 579999999999997
Q ss_pred ---hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceE
Q 014108 180 ---KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQ 256 (430)
Q Consensus 180 ---~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~ 256 (430)
+.++++++.|++||+++++++++|||||||||+||++.. +. .|+++++|+.||++||++|++ .++.
T Consensus 81 ~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~-~~--~~~d~~~~~~~l~el~~~l~~--------~~~~ 149 (318)
T cd02876 81 QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAA-YG--VPDKRKELIQLVIHLGETLHS--------ANLK 149 (318)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcc-cC--CHHHHHHHHHHHHHHHHHHhh--------cCCE
Confidence 579999999999999999999999999999999985431 22 378999999999999999997 4788
Q ss_pred EEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCCCCC-CCCCcEEE
Q 014108 257 LVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTR-SLARKIFL 335 (430)
Q Consensus 257 lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~-ip~~Kivl 335 (430)
+++++||+........++..+|+++|+++||+|+|||||||+++.|||+||+.|++++|++++. .+ +|++||+|
T Consensus 150 l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~~g~~apl~~v~~~v~~~~~-----~~~vp~~Klvl 224 (318)
T cd02876 150 LILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSPQRPGPNAPLSWVRSCLELLLP-----ESGKKRAKILL 224 (318)
T ss_pred EEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCCCCCCCCCCcHHHHHHHHHHHh-----cCCCCHHHeEE
Confidence 9999998653322233567899999999999999999999987789999999999999999986 34 99999999
Q ss_pred eecccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCCeEE
Q 014108 336 GINFYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGTGIA 415 (430)
Q Consensus 336 GipfYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~glGv~ 415 (430)
|||||||+|++...++++++.++++++++.+.+..||+++++++|.|.++ +.+|+|||||++|++.|++||+++|+|++
T Consensus 225 Gip~YG~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~-~~~~~v~ydd~~Si~~K~~~a~~~~lGv~ 303 (318)
T cd02876 225 GLNFYGNDYTLPGGGGAITGSEYLKLLKSNKPKLQWDEKSAEHFFEYKNK-GGKHAVFYPTLKSIQLRLDLAKELGTGIS 303 (318)
T ss_pred eccccccccccCCCCceeehHHHHHHHHhcCCCceeccCCCcceEEEecC-CCcEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence 99999999998765678899999999999999999999999999999654 56899999999999999999999999999
Q ss_pred EEEcCCCCchhhhcC
Q 014108 416 IWEIGQGLDYFFDLL 430 (430)
Q Consensus 416 iW~Lg~d~~~f~dlL 430 (430)
+|+||||+++||+||
T Consensus 304 ~W~lg~~~~~f~~~~ 318 (318)
T cd02876 304 IWELGQGLDYFYDLL 318 (318)
T ss_pred EEcccCCchHHhhcC
Confidence 999999999999987
No 3
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=8.8e-62 Score=481.61 Aligned_cols=298 Identities=28% Similarity=0.489 Sum_probs=264.6
Q ss_pred cEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeecC---Cc---
Q 014108 106 PVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEA---FP--- 179 (430)
Q Consensus 106 ~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~~---~~--- 179 (430)
+|+|||+||+..+|+.++.+.++||||+|+||+++++|.+ .+. .++.++..+|++++||+|+|...+ ++
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~---~~~--~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~ 77 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTL---TGL--PDERLIEAAKRRGVKPLLVITNLTNGNFDSEL 77 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCC---CCC--CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHH
Confidence 6899999999999999999999999999999999999873 343 357888888888999998875322 33
Q ss_pred -hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEE
Q 014108 180 -KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLV 258 (430)
Q Consensus 180 -~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~ls 258 (430)
+.++++++.|++||+++++++++||||||||| || .+ .++++++|+.||++||++|++ +++.|+
T Consensus 78 ~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiD-wE------~~-~~~d~~~~~~fl~~lr~~l~~--------~~~~ls 141 (313)
T cd02874 78 AHAVLSNPEARQRLINNILALAKKYGYDGVNID-FE------NV-PPEDREAYTQFLRELSDRLHP--------AGYTLS 141 (313)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEe-cc------cC-CHHHHHHHHHHHHHHHHHhhh--------cCcEEE
Confidence 57899999999999999999999999999999 65 32 578999999999999999996 478899
Q ss_pred EEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC-CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEee
Q 014108 259 YVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGI 337 (430)
Q Consensus 259 vavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGi 337 (430)
++++|.......+.+...+|+++|+++||+|+|||||+|++ +.|||+||+.|++.++++++ +++|++||+|||
T Consensus 142 v~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~~~------~gvp~~KlvlGi 215 (313)
T cd02874 142 TAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQYAV------TQIPREKILLGI 215 (313)
T ss_pred EEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHHHH------hcCCHHHEEEee
Confidence 99888644322234556899999999999999999999987 68999999999999999998 689999999999
Q ss_pred cccccccccCC----CCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-
Q 014108 338 NFYGNDFVLSE----GGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT- 412 (430)
Q Consensus 338 pfYG~~w~~~~----g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl- 412 (430)
|||||+|++.. .++.+++.++++++++++..+.||+++++||+.|.+++|..|+|||||++|+++|++|++++||
T Consensus 216 p~YG~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~~~~~~~lg 295 (313)
T cd02874 216 PLYGYDWTLPYKKGGKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEYGLR 295 (313)
T ss_pred cccccccccCCCCCcCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 99999998763 2457888999999999999999999999999999876688999999999999999999999999
Q ss_pred eEEEEEcCCCCchhhhcC
Q 014108 413 GIAIWEIGQGLDYFFDLL 430 (430)
Q Consensus 413 Gv~iW~Lg~d~~~f~dlL 430 (430)
|+++|+||+||+.+|++|
T Consensus 296 Gv~iW~lg~dD~~~w~~~ 313 (313)
T cd02874 296 GVSYWRLGLEDPQNWLLL 313 (313)
T ss_pred eEEEEECCCCCccccccC
Confidence 999999999999999987
No 4
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=2.6e-59 Score=460.42 Aligned_cols=285 Identities=24% Similarity=0.401 Sum_probs=247.6
Q ss_pred cEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEe-eCCceeeecCCCCCChHHH---HHHHhCCCcEEeEEe---ecCC
Q 014108 106 PVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLK-SQGTSLILEGRHNADAGWL---LELRKGDALVLPRVV---LEAF 178 (430)
Q Consensus 106 ~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~-~~g~~~~~~g~~d~d~~~l---~~~~~~~~kv~p~v~---~~~~ 178 (430)
.++|||+||++.+++.++.+.++||||+|+||+++ .+|.+. . . .|+..+ ..+| .+.+++|++. .++|
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~-~--~--~d~~~~~~~~~~k-~~~~~l~~~~~~~~~~~ 74 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRID-V--F--VDPQGVAIIAAAK-AHPKVLPLVQNISGGAW 74 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCcee-c--c--CChHHHHHHHHHH-cCCceeEEEEecCCCCC
Confidence 47999999999999999999999999999999998 456542 2 1 244433 3333 4556777664 2345
Q ss_pred c----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcc
Q 014108 179 P----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQH 254 (430)
Q Consensus 179 ~----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~ 254 (430)
+ +.++++++.|++||++++++|++||||||||| || .+ .++++++|+.||++||++|++ .+
T Consensus 75 ~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD-~E------~~-~~~d~~~~~~fl~eL~~~l~~--------~~ 138 (298)
T cd06549 75 DGKNIARLLADPSARAKFIANIAAYLERNQADGIVLD-FE------EL-PADDLPKYVAFLSELRRRLPA--------QG 138 (298)
T ss_pred CHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEe-cC------CC-ChhHHHHHHHHHHHHHHHhhh--------cC
Confidence 4 57999999999999999999999999999999 55 33 678999999999999999997 47
Q ss_pred eEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC-CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcE
Q 014108 255 LQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKI 333 (430)
Q Consensus 255 ~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~Ki 333 (430)
+.|++++|+.. ..+|+++|+++||+++|||||+|++ +.|||+||..|++++++++. .++|++||
T Consensus 139 ~~lsv~v~~~~---------~~~d~~~l~~~~D~v~lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~------~~vp~~Kl 203 (298)
T cd06549 139 KQLTVTVPADE---------ADWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQAV------KKLPPEKL 203 (298)
T ss_pred cEEEEEecCCC---------CCCCHHHHHHhCCEEEEEEeccCCCCCCCCCCCChhhHHHHHHHHH------hCCCHHHE
Confidence 89999998742 2489999999999999999999987 68999999999999999997 68999999
Q ss_pred EEeecccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-
Q 014108 334 FLGINFYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT- 412 (430)
Q Consensus 334 vlGipfYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl- 412 (430)
+||||||||+|++..++.+++..++..++.+++..+.||+++..|+|.|.+++|.+|+|||||++|++.|+++|+++||
T Consensus 204 vlGip~YG~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~l~ 283 (298)
T cd06549 204 IVALGSYGYDWTKGGNTKAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLGPA 283 (298)
T ss_pred EEEecccCccccCCCCCcccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcCCC
Confidence 9999999999998766678888888888888888999999888888777777788999999999999999999999999
Q ss_pred eEEEEEcCCCCchhh
Q 014108 413 GIAIWEIGQGLDYFF 427 (430)
Q Consensus 413 Gv~iW~Lg~d~~~f~ 427 (430)
|+++|+||+|++.+|
T Consensus 284 Gva~W~lg~ed~~~W 298 (298)
T cd06549 284 GVALWRLGSEDPGLW 298 (298)
T ss_pred cEEEEeccCCCCCCC
Confidence 999999999999998
No 5
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=8.5e-59 Score=455.33 Aligned_cols=353 Identities=22% Similarity=0.328 Sum_probs=308.8
Q ss_pred hhhhhheeeeeeEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCCCC----------CCCCCCCccEEEEEcCCCC
Q 014108 47 IVIPTVSVLLYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSEN----------ASHRYYTYPVLAYITPWNS 116 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~~~----------~~~~~~~~~vlgY~~~w~~ 116 (430)
++.+++.|..-+..|.+++|||++||+.+ .+++.+++...+..-|+. |+++..++.+.+|+++-.+
T Consensus 38 ~~~q~~~v~~~~~~y~~~~~d~~~Sia~~----~~vt~~~~~~m~~~~~~~~l~~~~~l~~P~~~~~~~~t~~~~~~~~~ 113 (423)
T COG3858 38 VDGQTFVVPPSGHFYDVGPGDTLTSIART----VGVTQDSAAIMNFVICPGYLQYGLNLYIPSARKTDGETTAYYAPRPP 113 (423)
T ss_pred cCceeEEECCcceEEEecCCcchhhhhhh----hcCCHHHHHhhcccccccceeeeeEEeccCCCCCcceeEEEecCCCc
Confidence 56666666766788999999999999999 999999999998666643 4455558899999998765
Q ss_pred --CCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeecC-----Cc----hhhcCC
Q 014108 117 --KGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEA-----FP----KELLRK 185 (430)
Q Consensus 117 --~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~~-----~~----~~~l~~ 185 (430)
.+..+.....+.+|.++.|.++.++.|.+... .+...++..++.+++.+|-++..+ ++ +.+|++
T Consensus 114 ~~~~~~~~~~~~p~~t~~~~F~~~~~~~g~l~~~-----p~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~n 188 (423)
T COG3858 114 TETGELVRRHAGPYLTYVDLFSYHAQENGNLTET-----PNENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNN 188 (423)
T ss_pred hhhhhhhhccCCcceeeeccchhccccccccccC-----CCcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhc
Confidence 22233556677899999999999888886532 245556655557778887777655 22 578999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCC
Q 014108 186 KKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPH 265 (430)
Q Consensus 186 ~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~ 265 (430)
+..++++++++++.++++||.|++|| ||.+ .++||+.|+.|++++|++||+ .|+.+++|+||++
T Consensus 189 et~~~~~i~~ii~~l~~~Gyrgv~iD-------fE~v-~~~DR~~yt~flR~~r~~l~~--------~G~~~siAvaakt 252 (423)
T COG3858 189 ETAKNRLINNIITLLDARGYRGVNID-------FENV-GPGDRELYTDFLRQVRDALHS--------GGYTVSIAVAAKT 252 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCcccEEec-------hhhC-CHHHHHHHHHHHHHHHHHhcc--------CCeEEEEEecCCC
Confidence 99999999999999999999999999 7886 899999999999999999998 5899999999998
Q ss_pred CCCCCCCCCCccCHHHHhccccEEEEecccCCCC-CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEeeccccccc
Q 014108 266 SEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDF 344 (430)
Q Consensus 266 ~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w 344 (430)
+..+.+.|++.||+..+++++|++.|||||+|++ +.|||+||+.||+..++|++ +.+|++||+||+|+||++|
T Consensus 253 ~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG~PG~vA~i~~vr~~ieya~------T~iP~~Kv~mGip~YGYDW 326 (423)
T COG3858 253 SDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGGPPGPVASIGWVRKVIEYAL------TVIPAEKVMMGIPLYGYDW 326 (423)
T ss_pred CCCcCccccchhhhhhhceeeeEEEEEEeccCcCCCCCCcccCchhHhhhhhhhh------eecchHHeEEccccccccc
Confidence 8777778999999999999999999999999988 79999999999999999999 6799999999999999999
Q ss_pred ccCCCC-----cccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEE
Q 014108 345 VLSEGG-----GAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWE 418 (430)
Q Consensus 345 ~~~~g~-----~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~ 418 (430)
..+... .+++..+.++++.+++++++||..+++|+|.|.|.+|.+|+|||||++|++.|+++++++|| ||++|.
T Consensus 327 ~~~y~~~g~~~~a~~~~~~i~ia~~y~A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~ 406 (423)
T COG3858 327 TLPYDPLGYLARAISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWV 406 (423)
T ss_pred cCCCCCCcceeeecCcchhhhhhcccCCccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEE
Confidence 988632 35778889999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCchhhhcC
Q 014108 419 IGQGLDYFFDLL 430 (430)
Q Consensus 419 Lg~d~~~f~dlL 430 (430)
||++++.+|..|
T Consensus 407 Lg~e~p~~w~~l 418 (423)
T COG3858 407 LGQEDPRNWTYL 418 (423)
T ss_pred ecCcchhHHhhc
Confidence 999999999875
No 6
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=6.8e-52 Score=416.78 Aligned_cols=278 Identities=20% Similarity=0.260 Sum_probs=231.1
Q ss_pred CCccEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeecCCchhh
Q 014108 103 YTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFPKEL 182 (430)
Q Consensus 103 ~~~~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~~~~~~~ 182 (430)
..++|+||..... .....+.+++|||..+ | +.+++.+..+|++|+||++. ++++..+
T Consensus 34 ~~~~~~~~~~~~~----~~~~~~~~~~tti~~~-------~---------~~~~~~~~~A~~~~v~v~~~---~~~~~~~ 90 (358)
T cd02875 34 PRFEFLVFSVNST----NYPNYDWSKVTTIAIF-------G---------DIDDELLCYAHSKGVRLVLK---GDVPLEQ 90 (358)
T ss_pred CceEEEEEEeCCC----cCcccccccceEEEec-------C---------CCCHHHHHHHHHcCCEEEEE---CccCHHH
Confidence 3468999997532 2245568899999977 2 24788899899999999954 4555678
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEC
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavp 262 (430)
+.+++.|++||+++++++++||||||||| || ++....++++++|+.||++||++|++.+ .+++|++++|
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdID-wE----~p~~~~~~d~~~~t~llkelr~~l~~~~------~~~~Lsvav~ 159 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINID-IE----QPITKGSPEYYALTELVKETTKAFKKEN------PGYQISFDVA 159 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEc-cc----CCCCCCcchHHHHHHHHHHHHHHHhhcC------CCcEEEEEEe
Confidence 99999999999999999999999999999 88 3332246789999999999999999742 4788999987
Q ss_pred CCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC--C---CCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEee
Q 014108 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--H---NPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGI 337 (430)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~---~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGi 337 (430)
.... ......||+++|+++||+++|||||+|++ + .|||+||+.|++.++++++. .++|++||+|||
T Consensus 160 ~~p~----~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~~~-----~gvp~~KLvLGi 230 (358)
T cd02875 160 WSPS----CIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNFTK-----LGIDPKKLVMGL 230 (358)
T ss_pred cCcc----cccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHHHH-----cCCCHHHeEEEe
Confidence 5211 11223599999999999999999999974 2 58999999999999999886 689999999999
Q ss_pred cccccccccCCC-----------------------CcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEe
Q 014108 338 NFYGNDFVLSEG-----------------------GGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFY 394 (430)
Q Consensus 338 pfYG~~w~~~~g-----------------------~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~y 394 (430)
|||||+|++.++ +..+++.+++++++..+....||+++++||+.|.|++|..|+|||
T Consensus 231 p~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~y~d~~g~~~~V~y 310 (358)
T cd02875 231 PWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYNYKDKQGNLHQVWY 310 (358)
T ss_pred CCCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCCCceeeccccccceEEEecCCCcEEEEEe
Confidence 999999975321 124677788877777778899999999999999887788899999
Q ss_pred CCHHHHHHHHHHHHHcCC-eEEEEEcCCCC
Q 014108 395 PSLISISMRLEEAKLWGT-GIAIWEIGQGL 423 (430)
Q Consensus 395 dd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d~ 423 (430)
||++||+.|++||+++|| |+++|+|++||
T Consensus 311 dD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD 340 (358)
T cd02875 311 DNPQSLSIKVAYAKNLGLKGIGMWNGDLLD 340 (358)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 999999999999999999 99999999976
No 7
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=6.2e-52 Score=419.06 Aligned_cols=291 Identities=22% Similarity=0.372 Sum_probs=239.9
Q ss_pred EEEEEcCCCC-----CCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHH---Hh--CCCcEEeEEeec
Q 014108 107 VLAYITPWNS-----KGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLEL---RK--GDALVLPRVVLE 176 (430)
Q Consensus 107 vlgY~~~w~~-----~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~---~~--~~~kv~p~v~~~ 176 (430)
|+||++.|.. ..|...+.+..+||||++.|+.++++|++......++.+.+.+.++ |+ +++||+ ++++
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvl--isiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFNALKEKNPNLKTL--LAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHHHHHhhCCCceEE--EEEc
Confidence 6899999974 2588899999999999999999999998765544444445555444 55 578888 7788
Q ss_pred CCc------hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 014108 177 AFP------KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRN 250 (430)
Q Consensus 177 ~~~------~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~ 250 (430)
||+ +.++++++.|++||+++++++++|+||||||| ||++...+ ..++|+++|+.||++||++|++.+
T Consensus 79 G~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiD-wE~p~~~~--~~~~d~~~~~~ll~~lr~~l~~~~---- 151 (362)
T cd02872 79 GWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLD-WEYPGQRG--GPPEDKENFVTLLKELREAFEPEA---- 151 (362)
T ss_pred CCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeee-eeccccCC--CCHHHHHHHHHHHHHHHHHHHhhC----
Confidence 885 36889999999999999999999999999999 88543211 257899999999999999999731
Q ss_pred CCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC--CCCCCCCChhh------------HHHHHH
Q 014108 251 RKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLKW------------ISFTLQ 316 (430)
Q Consensus 251 ~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~pgp~APl~~------------v~~~v~ 316 (430)
++++|++++|+... .+...+|+++|.++||+|+|||||||++ ..+||+||+.+ ++.+|+
T Consensus 152 --~~~~ls~av~~~~~-----~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~ 224 (362)
T cd02872 152 --PRLLLTAAVSAGKE-----TIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIK 224 (362)
T ss_pred --cCeEEEEEecCChH-----HHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHH
Confidence 37999999988521 1234689999999999999999999987 37899999975 899999
Q ss_pred HHhcCCCCCCCCCCCcEEEeecccccccccCCC-----C----------------cccCHHHHHHHHHhCCCceEeecCC
Q 014108 317 LLLGSPGIGTRSLARKIFLGINFYGNDFVLSEG-----G----------------GAITGREYLNLLQKHKPALQWEKNS 375 (430)
Q Consensus 317 ~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g-----~----------------~~i~~~~~~~l~~~~~~~~~wD~~s 375 (430)
++++ .++|++||+|||||||++|++... + +.+++.++++.+ +.+....||+++
T Consensus 225 ~~~~-----~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~ 298 (362)
T cd02872 225 YWLS-----KGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQ 298 (362)
T ss_pred HHHH-----cCCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCc
Confidence 9986 689999999999999999987531 0 124556666666 568899999999
Q ss_pred CceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEEcCCCCc
Q 014108 376 GEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQGLD 424 (430)
Q Consensus 376 ~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d~~ 424 (430)
++||+ |.+ .+||||||++||+.|++||+++|| |+++|+|++||.
T Consensus 299 ~~~y~-~~~----~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~ 343 (362)
T cd02872 299 KVPYA-YKG----NQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343 (362)
T ss_pred ceeEE-EEC----CEEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 99997 532 489999999999999999999999 999999999984
No 8
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.2e-51 Score=412.35 Aligned_cols=293 Identities=25% Similarity=0.408 Sum_probs=233.7
Q ss_pred cEEEEEcCCCCCC--cchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCC-ChHHHHHHHh--CCCcEEeEEeecCCc-
Q 014108 106 PVLAYITPWNSKG--YELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNA-DAGWLLELRK--GDALVLPRVVLEAFP- 179 (430)
Q Consensus 106 ~vlgY~~~w~~~~--y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~-d~~~l~~~~~--~~~kv~p~v~~~~~~- 179 (430)
+|+||+++|+..+ |++.+.+..+||||+++|+.++++|++....+..++ ....+..+|+ +++|+++ +++||.
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~kvl~--svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDGTVTIGDEWADIGNFGQLKALKKKNPGLKVLL--SIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCCCEeeCCcchhhhhHHHHHHHHHhCCCCEEEE--EEeCCCC
Confidence 5899999998765 889999999999999999999998875433222221 1234666766 5889985 557764
Q ss_pred ----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcce
Q 014108 180 ----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL 255 (430)
Q Consensus 180 ----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~ 255 (430)
+.++.+++.|++||++|++++++|+||||||| || ++.. ...++++|+.||++||++|++.. .+ ++++
T Consensus 79 s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiD-wE----~~~~-~~~d~~~~~~ll~~lr~~l~~~~--~~-~~~~ 149 (334)
T smart00636 79 SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDID-WE----YPGA-RGDDRENYTALLKELREALDKEG--AE-GKGY 149 (334)
T ss_pred CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEEC-Cc----CCCC-CccHHHHHHHHHHHHHHHHHHhc--cc-CCce
Confidence 47899999999999999999999999999999 87 3321 12688999999999999998641 11 3589
Q ss_pred EEEEEECCCCCCCCCCCCCCccC-HHHHhccccEEEEecccCCCC--CCCCCCCChhh---------HHHHHHHHhcCCC
Q 014108 256 QLVYVIGPPHSEKFQPHDFGPVD-LQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLKW---------ISFTLQLLLGSPG 323 (430)
Q Consensus 256 ~lsvavpp~~~~~~~~~~~~~~d-~~~l~~~vD~v~lMtYD~~~~--~~pgp~APl~~---------v~~~v~~~~~~~~ 323 (430)
+|++++||.... .-..+| +++|+++||+|+|||||+|++ ..+||+||+.| ++.+|++++.
T Consensus 150 ~lsi~v~~~~~~-----~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~--- 221 (334)
T smart00636 150 LLTIAVPAGPDK-----IDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLC--- 221 (334)
T ss_pred EEEEEecCChHH-----HHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHH---
Confidence 999999985321 112478 599999999999999999986 46999999987 8889999986
Q ss_pred CCCCCCCCcEEEeecccccccccCCCC-----ccc-------------CHHHHHHHHHhCCCceEeecCCCceeEEEEcC
Q 014108 324 IGTRSLARKIFLGINFYGNDFVLSEGG-----GAI-------------TGREYLNLLQKHKPALQWEKNSGEHFFFFSDE 385 (430)
Q Consensus 324 ~~~~ip~~KivlGipfYG~~w~~~~g~-----~~i-------------~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~ 385 (430)
.++|++||+|||||||++|++.++. .+. ....+.++++..+....||++++.|| .|.+
T Consensus 222 --~gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~~~~~~~d~~~~~~y-~~~~- 297 (334)
T smart00636 222 --KGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLLGATVVWDDTAKAPY-AYNP- 297 (334)
T ss_pred --cCCCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhcCcEEEEcCCCceeE-EEEC-
Confidence 6899999999999999999876421 111 11234555555588999999988887 5743
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEEcCCC
Q 014108 386 NQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 422 (430)
Q Consensus 386 ~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d 422 (430)
+.+|||||||++|+++|++||+++|| ||++|+||+|
T Consensus 298 -~~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 298 -GTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred -CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 34799999999999999999999999 9999999997
No 9
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.7e-51 Score=404.96 Aligned_cols=275 Identities=17% Similarity=0.314 Sum_probs=224.4
Q ss_pred ccEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCC-ChHHHHHHHh--CCCcEEeEEeecCCc--
Q 014108 105 YPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNA-DAGWLLELRK--GDALVLPRVVLEAFP-- 179 (430)
Q Consensus 105 ~~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~-d~~~l~~~~~--~~~kv~p~v~~~~~~-- 179 (430)
..+.||++.|. ..|...+++.++||||.+.|+.+++++..+.+.+.++. ...+.+.+|+ +++|++ +++|||.
T Consensus 3 ~~~~~Y~~~w~-~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvl--isiGG~~~~ 79 (299)
T cd02879 3 IVKGGYWPAWS-EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTL--LSIGGGGSD 79 (299)
T ss_pred eEEEEEECCCC-CCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEE--EEEeCCCCC
Confidence 57899999998 77899999999999999999999988755544432211 1235556666 566766 8889985
Q ss_pred ----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcce
Q 014108 180 ----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL 255 (430)
Q Consensus 180 ----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~ 255 (430)
+.++++++.|++||+++++++++||||||||| || |+. .++|+++|+.||++||++|++..++ ++++++
T Consensus 80 s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiD-WE----~P~--~~~d~~n~~~ll~elr~~l~~~~~~-~~~~~~ 151 (299)
T cd02879 80 SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLD-WE----FPS--SQVEMENFGKLLEEWRAAVKDEARS-SGRPPL 151 (299)
T ss_pred CchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeec-cc----CCC--ChhHHHHHHHHHHHHHHHHHHHhhc-cCCCcE
Confidence 46899999999999999999999999999999 87 443 5789999999999999999864322 233579
Q ss_pred EEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC---CCCCCCCChh------hHHHHHHHHhcCCCCCC
Q 014108 256 QLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP---HNPGPNAPLK------WISFTLQLLLGSPGIGT 326 (430)
Q Consensus 256 ~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~pgp~APl~------~v~~~v~~~~~~~~~~~ 326 (430)
+|++++|+.... ........||+++|+++||+|+|||||||++ ..+||+||+. .++.+|++++. .
T Consensus 152 ~ls~av~~~~~~-~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~-----~ 225 (299)
T cd02879 152 LLTAAVYFSPIL-FLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIK-----A 225 (299)
T ss_pred EEEeecccchhh-ccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHH-----c
Confidence 999998763210 0011234689999999999999999999987 2578999986 36888999886 7
Q ss_pred CCCCCcEEEeecccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHH
Q 014108 327 RSLARKIFLGINFYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEE 406 (430)
Q Consensus 327 ~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~ 406 (430)
|+|++||+||||||||+|++ ||++++++|. |.+ .+||+|||++||+.|++|
T Consensus 226 g~p~~KlvlGvp~YGr~~~~------------------------~D~~~~~~y~-~~~----~~wi~ydd~~Si~~K~~~ 276 (299)
T cd02879 226 GVPAKKLVLGLPLYGRAWTL------------------------YDTTTVSSYV-YAG----TTWIGYDDVQSIAVKVKY 276 (299)
T ss_pred CCCHHHEEEEeccccccccc------------------------cCCCcceEEE-EEC----CEEEEeCCHHHHHHHHHH
Confidence 89999999999999999975 8988888874 532 379999999999999999
Q ss_pred HHHcCC-eEEEEEcCCCCch
Q 014108 407 AKLWGT-GIAIWEIGQGLDY 425 (430)
Q Consensus 407 a~~~gl-Gv~iW~Lg~d~~~ 425 (430)
|+++|| |+++|+||+|+..
T Consensus 277 a~~~~lgGv~~W~l~~Dd~~ 296 (299)
T cd02879 277 AKQKGLLGYFAWAVGYDDNN 296 (299)
T ss_pred HHhCCCCeEEEEEeecCCcc
Confidence 999999 9999999999864
No 10
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.5e-49 Score=393.86 Aligned_cols=277 Identities=20% Similarity=0.379 Sum_probs=222.1
Q ss_pred EEEEEcCCCCC--Ccchh-hccCCCCcEEEEEEEEEeeCCceeeecC----------------CCCCChH---HHHHHHh
Q 014108 107 VLAYITPWNSK--GYELA-KMFNSKFTHLSPVWYDLKSQGTSLILEG----------------RHNADAG---WLLELRK 164 (430)
Q Consensus 107 vlgY~~~w~~~--~y~~~-~~~~~klT~vsp~w~~i~~~g~~~~~~g----------------~~d~d~~---~l~~~~~ 164 (430)
|+||++.|... ++... +++..+||||.+.++.++++|.+..... ..+...+ .+..+|+
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 68999999753 33333 4788999999999999999987643210 0111222 3345555
Q ss_pred --CCCcEEeEEeecCCc-----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCC---CCCHHHHHHHHHH
Q 014108 165 --GDALVLPRVVLEAFP-----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGI---LHDPELRNMALEF 234 (430)
Q Consensus 165 --~~~kv~p~v~~~~~~-----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~---~~~~~d~~~~~~f 234 (430)
+++||+ ++++||. +.++++++.|++||+++++++++|+||||||| ||+....+. ...++++++|+.|
T Consensus 81 ~~p~lkvl--~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiD-wE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 81 KNPHLKIL--LSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDID-WEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred hCCCCEEE--EEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEEC-CcCCCCCCCCCCCCChhHHHHHHHH
Confidence 568888 6778886 46889999999999999999999999999999 884321110 1137899999999
Q ss_pred HHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC--CCCCCCCChh---
Q 014108 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLK--- 309 (430)
Q Consensus 235 l~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~pgp~APl~--- 309 (430)
|++||++|++.+.+ + .++++|++++|+... .+..+|+++|+++||+|+|||||||++ ..+||+||+.
T Consensus 158 l~~Lr~~l~~~~~~-~-~~~~~Ls~av~~~~~------~~~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~ 229 (322)
T cd06548 158 LKELREALDALGAE-T-GRKYLLTIAAPAGPD------KLDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASP 229 (322)
T ss_pred HHHHHHHHHHhhhc-c-CCceEEEEEccCCHH------HHhcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCC
Confidence 99999999975322 1 236899999988531 234678999999999999999999987 5789999974
Q ss_pred -------hHHHHHHHHhcCCCCCCCCCCCcEEEeecccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEE
Q 014108 310 -------WISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFF 382 (430)
Q Consensus 310 -------~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y 382 (430)
.++.++++++. .|+|++||+||||||||.|++ ....||+++++||+ |
T Consensus 230 ~~~~~~~~v~~~v~~~~~-----~gvp~~KlvlGip~YGr~~~~--------------------~~~~~D~~~~~~y~-~ 283 (322)
T cd06548 230 ADPPGGYSVDAAVNYYLS-----AGVPPEKLVLGVPFYGRGWTG--------------------YTRYWDEVAKAPYL-Y 283 (322)
T ss_pred CCCCCCccHHHHHHHHHH-----cCCCHHHeEEEecccccccCC--------------------cEEEEcCCcceeEE-E
Confidence 48899999986 689999999999999999985 56799999999986 6
Q ss_pred EcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEEcCCC
Q 014108 383 SDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 422 (430)
Q Consensus 383 ~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d 422 (430)
.+ +..+||+|||++||+.|++||+++|| |+++|+|+||
T Consensus 284 ~~--~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 284 NP--STKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred eC--CCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 32 34689999999999999999999999 9999999997
No 11
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=5.2e-48 Score=395.47 Aligned_cols=295 Identities=19% Similarity=0.229 Sum_probs=224.6
Q ss_pred cEEEEEcCCCC-----CCcchhhccCC--CCcEEEEEEEEEeeCCcee-eecCCCCCCh---HHHHHHHh--CCCcEEeE
Q 014108 106 PVLAYITPWNS-----KGYELAKMFNS--KFTHLSPVWYDLKSQGTSL-ILEGRHNADA---GWLLELRK--GDALVLPR 172 (430)
Q Consensus 106 ~vlgY~~~w~~-----~~y~~~~~~~~--klT~vsp~w~~i~~~g~~~-~~~g~~d~d~---~~l~~~~~--~~~kv~p~ 172 (430)
+|+||+..|.. ..|...+++.. +||||.+.++.|++++..+ ......+.+. ..+..+|+ +++|++
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvl-- 78 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVL-- 78 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEE--
Confidence 47999999953 24566777764 4999999999999875433 2221112222 34556666 678888
Q ss_pred EeecCCc-----------hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccC-------------------CC-
Q 014108 173 VVLEAFP-----------KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAY-------------------GI- 221 (430)
Q Consensus 173 v~~~~~~-----------~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~-------------------e~- 221 (430)
++++||. +.++++++.|++||+++++++++|+||||||| ||+...- .+
T Consensus 79 lSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiD-WEyP~~~~~~~~g~~~~~~~~~~~~~~g~ 157 (413)
T cd02873 79 LSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLA-WQFPKNKPKKVRGTFGSAWHSFKKLFTGD 157 (413)
T ss_pred EeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEee-eeCCCCcccccccccchhhhhhhcccccc
Confidence 6779884 36899999999999999999999999999999 9954210 00
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCC
Q 014108 222 ----LHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFS 297 (430)
Q Consensus 222 ----~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~ 297 (430)
...++|+++|+.||++||++|++ .+++|+++++|.... ...+|+++|+++||+|+|||||||
T Consensus 158 ~~~~~~~~~d~~nf~~Ll~elr~~l~~--------~~~~ls~av~~~~~~------~~~~d~~~l~~~vD~inlMtYD~~ 223 (413)
T cd02873 158 SVVDEKAAEHKEQFTALVRELKNALRP--------DGLLLTLTVLPHVNS------TWYFDVPAIANNVDFVNLATFDFL 223 (413)
T ss_pred cccCCCChhHHHHHHHHHHHHHHHhcc--------cCcEEEEEecCCchh------ccccCHHHHhhcCCEEEEEEeccc
Confidence 01478999999999999999987 478999999875321 124899999999999999999999
Q ss_pred CCC----CCCCCCChh---------hHHHHHHHHhcCCCCCCCCCCCcEEEeecccccccccCCC---------------
Q 014108 298 GPH----NPGPNAPLK---------WISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEG--------------- 349 (430)
Q Consensus 298 ~~~----~pgp~APl~---------~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g--------------- 349 (430)
++. ..|++||+. +++.+|++++. .|+|++||+||||||||.|++...
T Consensus 224 g~~~~~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~-----~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~ 298 (413)
T cd02873 224 TPERNPEEADYTAPIYELYERNPHHNVDYQVKYWLN-----QGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGP 298 (413)
T ss_pred CCCCCCCccCcCCccCCCccccccccHHHHHHHHHH-----cCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCC
Confidence 862 367888886 68899999986 689999999999999999986421
Q ss_pred ---------CcccCHHHHHHHHHhCC--------CceEeecCCCc-eeEEEEcCC--C-ceEEEEeCCHHHHHHHHHHHH
Q 014108 350 ---------GGAITGREYLNLLQKHK--------PALQWEKNSGE-HFFFFSDEN--Q-VKHAVFYPSLISISMRLEEAK 408 (430)
Q Consensus 350 ---------~~~i~~~~~~~l~~~~~--------~~~~wD~~s~~-~y~~y~d~~--g-~~~~V~ydd~~Si~~K~~~a~ 408 (430)
.+.+++.++++++...+ .+..||++.+. +| .|.+.+ + .+.||+|||++||+.|++||+
T Consensus 299 ~~~G~~~~~~g~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y-~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~ 377 (413)
T cd02873 299 GPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSY-AYRPADENGEHGIWVSYEDPDTAANKAGYAK 377 (413)
T ss_pred CCCCCCcCCCccccHHHHHHhhccCccccccccceeEeecccccccce-EEeccccCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 01255667766655421 23458887764 55 454321 1 246999999999999999999
Q ss_pred HcCC-eEEEEEcCCCC
Q 014108 409 LWGT-GIAIWEIGQGL 423 (430)
Q Consensus 409 ~~gl-Gv~iW~Lg~d~ 423 (430)
++|| |+|+|++++||
T Consensus 378 ~~gLgGv~~W~l~~DD 393 (413)
T cd02873 378 AKGLGGVALFDLSLDD 393 (413)
T ss_pred hCCCceEEEEeeecCc
Confidence 9999 99999999997
No 12
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.4e-47 Score=384.40 Aligned_cols=284 Identities=19% Similarity=0.257 Sum_probs=218.2
Q ss_pred cEEEEEcCCCC----CCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHh-CCCcEEeEEeecCCch
Q 014108 106 PVLAYITPWNS----KGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK-GDALVLPRVVLEAFPK 180 (430)
Q Consensus 106 ~vlgY~~~w~~----~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~-~~~kv~p~v~~~~~~~ 180 (430)
+++||++.|.. ..|.+.+++..+||||.+.++.++++|++... + ..+-+.++++ +++|++ +++|||..
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~----~-~~~~~~~~~~~k~lkvl--lsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFSVDVS----S-VQEQFSDFKKLKGVKKI--LSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCeEeec----c-cHHHHHHHHhhcCcEEE--EEEeCCCC
Confidence 47899999964 24677899999999999999999999876432 1 2233344444 568888 78899851
Q ss_pred -----------hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCC--C--CCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 181 -----------ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYG--I--LHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 181 -----------~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e--~--~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
.++ +++.|++||+++++++++|+||||||| ||+...-+ . ...++|+++|+.||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiD-wE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFD-WEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeec-ccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc-
Confidence 234 899999999999999999999999999 98432110 0 01468999999999999999985
Q ss_pred cccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC-CC------CCCC--------CChhh
Q 014108 246 NSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HN------PGPN--------APLKW 310 (430)
Q Consensus 246 ~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~------pgp~--------APl~~ 310 (430)
+++|++++|+... ....+|+++|+++||+++|||||||++ .. |++. .+...
T Consensus 151 --------~~~ls~a~~~~~~------~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~ 216 (345)
T cd02878 151 --------GKSLSIAAPASYW------YLKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTE 216 (345)
T ss_pred --------CcEEEEEcCCChh------hhcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchh
Confidence 5789999887421 234699999999999999999999986 11 2111 12234
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcEEEeecccccccccCCC-----------Cc----------ccCH---HHHHH-HHHhC
Q 014108 311 ISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEG-----------GG----------AITG---REYLN-LLQKH 365 (430)
Q Consensus 311 v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g-----------~~----------~i~~---~~~~~-l~~~~ 365 (430)
++++|+++++ .|+|++||+||||||||.|++... .. ...+ .+++. ++++.
T Consensus 217 ~~~~v~~~~~-----~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~ 291 (345)
T cd02878 217 TLDALSMITK-----AGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKS 291 (345)
T ss_pred HHHHHHHHHH-----cCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccC
Confidence 7788999886 689999999999999999987631 00 1111 33333 23345
Q ss_pred CCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEEcCCC
Q 014108 366 KPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 422 (430)
Q Consensus 366 ~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d 422 (430)
+.+..||+++++||+.|.+ .+||+|||++||+.|++||+++|| |+++|+|++|
T Consensus 292 ~~~~~~d~~~~~~y~~~~~----~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 292 KNKRWYDTDSDSDILVYDD----DQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCcEEEecCCCccEEEEcC----CEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 7889999999999987742 279999999999999999999999 9999999986
No 13
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-47 Score=371.31 Aligned_cols=300 Identities=20% Similarity=0.350 Sum_probs=231.5
Q ss_pred ccEEEEEcCCCC--C-CcchhhccCCCCcEEEEEEEEEeeCCceee--------e---------cCCCCC--C---hHHH
Q 014108 105 YPVLAYITPWNS--K-GYELAKMFNSKFTHLSPVWYDLKSQGTSLI--------L---------EGRHNA--D---AGWL 159 (430)
Q Consensus 105 ~~vlgY~~~w~~--~-~y~~~~~~~~klT~vsp~w~~i~~~g~~~~--------~---------~g~~d~--d---~~~l 159 (430)
.+|+|||+.|.. . .|.+.++...++|||.+.|+.|+++|.... . .+.+.. - -+.|
T Consensus 38 ~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~~~L 117 (441)
T COG3325 38 FKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFGAL 117 (441)
T ss_pred ceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchHHHH
Confidence 589999999973 3 678889999999999999999999984200 0 011111 1 2345
Q ss_pred HHHHh--CCCcEEeEEeecCCc-----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCC---CCCHHHHH
Q 014108 160 LELRK--GDALVLPRVVLEAFP-----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGI---LHDPELRN 229 (430)
Q Consensus 160 ~~~~~--~~~kv~p~v~~~~~~-----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~---~~~~~d~~ 229 (430)
..+|+ +++|++ +++|||+ +.+..|.+.|++|++++|+|+++|+||||||| ||+...-+. ...++|.+
T Consensus 118 ~~lk~~~~d~k~l--~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDID-WEYP~~~~~~~~~~~~~d~~ 194 (441)
T COG3325 118 FDLKATYPDLKTL--ISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDID-WEYPGSGGDAGNCGRPKDKA 194 (441)
T ss_pred HHHhhhCCCceEE--EeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeec-cccCCCCCCCCCCCCcccHH
Confidence 56666 567888 8899997 58999999999999999999999999999999 996532221 13578999
Q ss_pred HHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC--CCCCCCCC
Q 014108 230 MALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--HNPGPNAP 307 (430)
Q Consensus 230 ~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~pgp~AP 307 (430)
+|+.||++||++|...+.+.. ++++||+|.|+... .....+..+++++||++|+|||||||+ ...|++||
T Consensus 195 ny~~Ll~eLR~~LD~a~~edg--r~Y~LTiA~~as~~------~l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~ 266 (441)
T COG3325 195 NYVLLLQELRKKLDKAGVEDG--RHYQLTIAAPASKD------KLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAA 266 (441)
T ss_pred HHHHHHHHHHHHHhhcccccC--ceEEEEEecCCchh------hhhcccHHHHHHHHhhhheeeeecccccccccccccc
Confidence 999999999999998765543 47999999987432 345789999999999999999999998 58899999
Q ss_pred hhh-------------HHH------HHHHHhcCCCCCCCCCCCcEEEeecccccccccCCCCc---------ccC-----
Q 014108 308 LKW-------------ISF------TLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGG---------AIT----- 354 (430)
Q Consensus 308 l~~-------------v~~------~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g~~---------~i~----- 354 (430)
|+- ++. -++.... .++||+||+||+|||||.|....++. .+.
T Consensus 267 Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~ 341 (441)
T COG3325 267 LYGTPKDPPLANGGFYVDAEVDGIDWLEEGFA-----GDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIP 341 (441)
T ss_pred cccCCCCCccccCCeeEEEEechhHHHHhhhc-----cCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCC
Confidence 971 121 2333333 67899999999999999997654221 000
Q ss_pred ---H------HHHH---HHH----HhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEE
Q 014108 355 ---G------REYL---NLL----QKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIW 417 (430)
Q Consensus 355 ---~------~~~~---~l~----~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW 417 (430)
+ .++. .+. .+.+....||+++++||+ |.+++ ..+|+|||++||+.|.+||+++|| |+|+|
T Consensus 342 ~Gtw~a~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL-~n~~~--~vFiSyDd~rSvkaK~eYv~~n~LGG~m~W 418 (441)
T COG3325 342 KGTWEAGNGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYL-YNPEK--GVFISYDDPRSVKAKAEYVADNNLGGMMFW 418 (441)
T ss_pred CCcccccccCccchhhccccccccCCCCeeEeccccccccee-ecCCC--CeEEEccCCcchhhHHHHHhhcCccceEEE
Confidence 0 0111 121 233557899999999997 65544 479999999999999999999999 99999
Q ss_pred EcCCCC
Q 014108 418 EIGQGL 423 (430)
Q Consensus 418 ~Lg~d~ 423 (430)
++.||-
T Consensus 419 e~sgD~ 424 (441)
T COG3325 419 EISGDE 424 (441)
T ss_pred EecCCc
Confidence 999993
No 14
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=372.07 Aligned_cols=303 Identities=21% Similarity=0.311 Sum_probs=234.7
Q ss_pred CCCCCccEEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCC-CChHHHHHHHh--CCCcEEeEEeec
Q 014108 100 HRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHN-ADAGWLLELRK--GDALVLPRVVLE 176 (430)
Q Consensus 100 ~~~~~~~vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d-~d~~~l~~~~~--~~~kv~p~v~~~ 176 (430)
...+.....||+.+|.. .....+.+..+|||+.+.++.++++|......+.+. .-......+|+ +++|+| +++|
T Consensus 53 ~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~l--lSIG 129 (432)
T KOG2806|consen 53 NTVCEKSIVGYYPSRIG-PETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVM--ISIG 129 (432)
T ss_pred cccccceeEEEeCCCCC-CCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEE--EEec
Confidence 34567899999998872 446788899999999999999999998654432221 11234445555 456776 8999
Q ss_pred CC-c-----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 014108 177 AF-P-----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRN 250 (430)
Q Consensus 177 ~~-~-----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~ 250 (430)
|| . +.+++|++.|+.||+++++|+++|+||||||| |+ |+. ..+.|+.+|..|++|||.+|.+..+...
T Consensus 130 G~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~-We----~P~-~~~~d~~~~~~~i~elr~~~~~~~~~~~ 203 (432)
T KOG2806|consen 130 GSHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLA-WE----WPL-FTPSDQLEFSRFIQELRSAFARETLKSP 203 (432)
T ss_pred CCCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeee-eE----CCC-CchhhHHHHHHHHHHHHHHHHHHhhccC
Confidence 99 4 47999999999999999999999999999999 98 553 1468999999999999999997643322
Q ss_pred CCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC--C--CCCCCCChh----------hHHHHHH
Q 014108 251 RKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--H--NPGPNAPLK----------WISFTLQ 316 (430)
Q Consensus 251 ~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~--~pgp~APl~----------~v~~~v~ 316 (430)
+...++..++++++. ..+...||+++|.++|||+|||||||+++ . ..||+||++ .++..++
T Consensus 204 ~~~~~l~~~v~~~~~-----~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~k 278 (432)
T KOG2806|consen 204 DTAKVLEAVVADSKQ-----SAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLK 278 (432)
T ss_pred CccceeeeccccCcc-----chhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHH
Confidence 221233333333321 11345799999999999999999999997 3 589999997 4788999
Q ss_pred HHhcCCCCCCCCCCCcEEEeecccccccccCCC---------------------CcccCHHHHHHHHHhCCCceEeecCC
Q 014108 317 LLLGSPGIGTRSLARKIFLGINFYGNDFVLSEG---------------------GGAITGREYLNLLQKHKPALQWEKNS 375 (430)
Q Consensus 317 ~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g---------------------~~~i~~~~~~~l~~~~~~~~~wD~~s 375 (430)
|++. .+.|++||+|||||||+.|++... .+.+++.++++...+.+ ...||+++
T Consensus 279 y~~~-----~~~~~~Kl~~gip~yg~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~ 352 (432)
T KOG2806|consen 279 YWTE-----KGLPPSKLVLALPFYGRSWQLLEDSRSSAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEET 352 (432)
T ss_pred HHhh-----cCCCchheEEEEecceehhhhcCCcCCCCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCc
Confidence 9985 579999999999999999988651 11234455555333333 78999999
Q ss_pred CceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEEcCCCCch
Q 014108 376 GEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQGLDY 425 (430)
Q Consensus 376 ~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d~~~ 425 (430)
+.|| .|.. ..+.||+|||++||+.|++||+++|| ||++|.|++||..
T Consensus 353 ~~~Y-~~~~--~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~ 400 (432)
T KOG2806|consen 353 QTPY-LYNI--PYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDES 400 (432)
T ss_pred eeee-EEec--CCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCC
Confidence 9988 4743 44689999999999999999999999 9999999999863
No 15
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=4.9e-45 Score=364.97 Aligned_cols=295 Identities=28% Similarity=0.481 Sum_probs=229.8
Q ss_pred ccEEEEEcCCCC--CC-cchhhccCCCCcEEEEEEEEEeeCCceeee---cCCCCCC---hHHHHHHHh--CCCcEEeEE
Q 014108 105 YPVLAYITPWNS--KG-YELAKMFNSKFTHLSPVWYDLKSQGTSLIL---EGRHNAD---AGWLLELRK--GDALVLPRV 173 (430)
Q Consensus 105 ~~vlgY~~~w~~--~~-y~~~~~~~~klT~vsp~w~~i~~~g~~~~~---~g~~d~d---~~~l~~~~~--~~~kv~p~v 173 (430)
++|+||+++|+. .+ |.......++||||+++|..++.++..... ....+.. ...+..+++ +++||++
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll-- 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL-- 78 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE--
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE--
Confidence 479999999964 44 677888889999999999999999976320 0111112 234555554 6899995
Q ss_pred eecCC--c----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccc
Q 014108 174 VLEAF--P----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNS 247 (430)
Q Consensus 174 ~~~~~--~----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~ 247 (430)
+++|| + ..++.+++.|++||++|++++++|+||||||| ||+.... ..+.++++|..||++||++|++.++
T Consensus 79 sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD-~e~~~~~---~~~~~~~~~~~~l~~L~~~l~~~~~ 154 (343)
T PF00704_consen 79 SIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDID-WEYPSSS---GDPQDKDNYTAFLKELRKALKRANR 154 (343)
T ss_dssp EEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEE-ESSTTST---SSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeee-eeecccc---ccchhhhhhhhhhhhhhhhhccccc
Confidence 55776 2 36788999999999999999999999999999 7732110 0256999999999999999997421
Q ss_pred cccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC--CCCCCCCChh---------hHHHHHH
Q 014108 248 VRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLK---------WISFTLQ 316 (430)
Q Consensus 248 ~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~pgp~APl~---------~v~~~v~ 316 (430)
.. +++.|++++|+... ....+|+..+.++||+|+|||||++++ +.++|++|+. +++.+++
T Consensus 155 ~~---~~~~ls~a~p~~~~------~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 225 (343)
T PF00704_consen 155 SG---KGYILSVAVPPSPD------YYDKYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQ 225 (343)
T ss_dssp HH---STSEEEEEEECSHH------HHTTHHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHH
T ss_pred cc---ceeEEeeccccccc------cccccccccccccccccccccccCCCCcccccccccccccCCccCCCceeeeehh
Confidence 10 27899999988521 234569999999999999999999985 4678888864 3788999
Q ss_pred HHhcCCCCCCCCCCCcEEEeecccccccccCCCC-------------------cccCHHHHHHHHHhCCCceEeecCCCc
Q 014108 317 LLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGG-------------------GAITGREYLNLLQKHKPALQWEKNSGE 377 (430)
Q Consensus 317 ~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g~-------------------~~i~~~~~~~l~~~~~~~~~wD~~s~~ 377 (430)
+++. .|+|++||+||+|+||+.|++..+. +.+.+.+++...++++....||+++++
T Consensus 226 ~~~~-----~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 300 (343)
T PF00704_consen 226 YWIK-----AGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQA 300 (343)
T ss_dssp HHHH-----TTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTE
T ss_pred hhcc-----ccCChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeecccc
Confidence 9986 6799999999999999999887532 235677777777778899999999999
Q ss_pred eeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEEEcCCC
Q 014108 378 HFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 422 (430)
Q Consensus 378 ~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW~Lg~d 422 (430)
+|+.+ .+ ..+||+|||++|+++|++|++++|| ||++|+|++|
T Consensus 301 ~y~~~-~~--~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 301 PYAYN-DD--KKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEEE-TT--TTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred eEEEe-cC--CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 99744 32 4699999999999999999999999 9999999987
No 16
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=3.9e-43 Score=338.04 Aligned_cols=240 Identities=22% Similarity=0.246 Sum_probs=196.1
Q ss_pred EEEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeecCCc----hhh
Q 014108 107 VLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFP----KEL 182 (430)
Q Consensus 107 vlgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~~~~----~~~ 182 (430)
|+||++.|+.....+.+.+..+||||+|+|+.++++|++....+..+ ...++..+|++++||+|+| +||. ..+
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~~~~-~~~~~~~~~~~~~kvl~si--gg~~~~~~~~~ 77 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANGTLNANPVRSE-LNSVVNAAHAHNVKILISL--AGGSPPEFTAA 77 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCCeEEecCcHHH-HHHHHHHHHhCCCEEEEEE--cCCCCCcchhh
Confidence 68999999876545788899999999999999999998643211111 1346667777889999765 5553 458
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEC
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavp 262 (430)
+++++.|++|++++++++++|+||||||| || ++. . ++++|..|+++||++|++ .++.|+++++
T Consensus 78 ~~~~~~r~~fi~~lv~~~~~~~~DGIdiD-wE----~~~--~--~~~~~~~fv~~Lr~~l~~--------~~~~lt~av~ 140 (253)
T cd06545 78 LNDPAKRKALVDKIINYVVSYNLDGIDVD-LE----GPD--V--TFGDYLVFIRALYAALKK--------EGKLLTAAVS 140 (253)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCceeEE-ee----ccC--c--cHhHHHHHHHHHHHHHhh--------cCcEEEEEcc
Confidence 89999999999999999999999999999 77 332 1 278999999999999986 4678999887
Q ss_pred CCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC---CCCCCCCChhhHHHHHHHHhcCCCCCCCC-CCCcEEEeec
Q 014108 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP---HNPGPNAPLKWISFTLQLLLGSPGIGTRS-LARKIFLGIN 338 (430)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~pgp~APl~~v~~~v~~~~~~~~~~~~i-p~~KivlGip 338 (430)
+... .+...++.++||+++|||||++++ ..|||+||+.|+++++++++. .++ |++||+||||
T Consensus 141 ~~~~---------~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~-----~g~ip~~KlvlGlp 206 (253)
T cd06545 141 SWNG---------GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNE-----RGLASKDKLVLGLP 206 (253)
T ss_pred Cccc---------ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHH-----cCCCCHHHEEEEeC
Confidence 6321 112356788999999999999876 379999999999999999875 566 9999999999
Q ss_pred ccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEE
Q 014108 339 FYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIW 417 (430)
Q Consensus 339 fYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW 417 (430)
|||++| +|+++.++++|+++|+++ + |+|+|
T Consensus 207 ~YG~~w------------------------------------------------~~~~~~~~~~~~~~~~~~-~gG~~~w 237 (253)
T cd06545 207 FYGYGF------------------------------------------------YYNGIPTIRNKVAFAKQN-YGGVMIW 237 (253)
T ss_pred Cccccc------------------------------------------------cCCCHHHHHHHHHHHHHh-cCeEEEE
Confidence 999998 466667999999999999 9 99999
Q ss_pred EcCCCCchhhhc
Q 014108 418 EIGQGLDYFFDL 429 (430)
Q Consensus 418 ~Lg~d~~~f~dl 429 (430)
++++|...-.+|
T Consensus 238 ~~~~d~~~~~~l 249 (253)
T cd06545 238 ELSQDASGENSL 249 (253)
T ss_pred eccCCCCCCcch
Confidence 999998554454
No 17
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.98 E-value=1.5e-31 Score=249.51 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=163.2
Q ss_pred EEEEEcCCCCCCcc-hhhccCCCCcEEEEEEEEEeeCCceee-ecCCCCCChHHHHHHHh--CCCcEEeEEeecCCc--h
Q 014108 107 VLAYITPWNSKGYE-LAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP--K 180 (430)
Q Consensus 107 vlgY~~~w~~~~y~-~~~~~~~klT~vsp~w~~i~~~g~~~~-~~g~~d~d~~~l~~~~~--~~~kv~p~v~~~~~~--~ 180 (430)
++||+.+|+..... ..+.+..+||||+|.|+.++++|.... ....++....+++.+++ +++||+|+| +||. .
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~si--gg~~~~~ 78 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISI--GGWTDSS 78 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEE--cCCCCCC
Confidence 58999999876543 578889999999999999999987642 11222233557777877 489999654 6664 2
Q ss_pred --hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEE
Q 014108 181 --ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLV 258 (430)
Q Consensus 181 --~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~ls 258 (430)
.++.+++.|++|++++++++++|+||||||| ||+ +......++++|+.||++||++|++ .+++|+
T Consensus 79 ~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD-~E~----~~~~~~~~~~~~~~ll~~lr~~l~~--------~~~~ls 145 (210)
T cd00598 79 PFTLASDPASRAAFANSLVSFLKTYGFDGVDID-WEY----PGAADNSDRENFITLLRELRSALGA--------ANYLLT 145 (210)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHHcCCCceEEe-eeC----CCCcCccHHHHHHHHHHHHHHHhcc--------cCcEEE
Confidence 4789999999999999999999999999999 773 3211113689999999999999986 478999
Q ss_pred EEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEeec
Q 014108 259 YVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGIN 338 (430)
Q Consensus 259 vavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGip 338 (430)
+++|+.... ....+++.++++++|++++|||| |+||+|
T Consensus 146 ~a~~~~~~~-----~~~~~~~~~l~~~vD~v~vm~Yd-------------------------------------l~~g~~ 183 (210)
T cd00598 146 IAVPASYFD-----LGYAYDVPAIGDYVDFVNVMTYD-------------------------------------LVLGVP 183 (210)
T ss_pred EEecCChHH-----hhccCCHHHHHhhCCEEEEeeec-------------------------------------ccccch
Confidence 999885321 11148999999999999999999 788999
Q ss_pred ccccccccCCCCcccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEE
Q 014108 339 FYGNDFVLSEGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIW 417 (430)
Q Consensus 339 fYG~~w~~~~g~~~i~~~~~~~l~~~~~~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~~a~~~gl-Gv~iW 417 (430)
+| |++.|+++++++++ ||++|
T Consensus 184 ~~----------------------------------------------------------s~~~k~~~~~~~~~gGv~~w 205 (210)
T cd00598 184 FY----------------------------------------------------------SLGAKAKYAKQKGLGGVMIW 205 (210)
T ss_pred hh----------------------------------------------------------hHHHHHHHHHHcCCceEEEE
Confidence 99 99999999999999 99999
Q ss_pred EcCCC
Q 014108 418 EIGQG 422 (430)
Q Consensus 418 ~Lg~d 422 (430)
++++|
T Consensus 206 ~~~~d 210 (210)
T cd00598 206 ELDQD 210 (210)
T ss_pred eccCC
Confidence 99986
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.89 E-value=7.8e-22 Score=189.94 Aligned_cols=196 Identities=12% Similarity=0.111 Sum_probs=137.1
Q ss_pred cEEEEEcCCC--CCCcch----hhccCCCCcEEEEEEEEEeeCCceeeecCCC-CCC--hHHH---HHHHhCCCcEEeEE
Q 014108 106 PVLAYITPWN--SKGYEL----AKMFNSKFTHLSPVWYDLKSQGTSLILEGRH-NAD--AGWL---LELRKGDALVLPRV 173 (430)
Q Consensus 106 ~vlgY~~~w~--~~~y~~----~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~-d~d--~~~l---~~~~~~~~kv~p~v 173 (430)
+++||++.|. ...+.. ...+..+||||.++++.++.+|++. +.+.. +.+ .... ..++++++||+ +
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~-~~d~~~~~~~~~~~~~~i~~~~~~g~KVl--l 77 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIH-LNDHPPDHPRFTTLWTELAILQSSGVKVM--G 77 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEE-ECCCCCCcchhhHHHHHHHHHHhCCCEEE--E
Confidence 5799999994 232222 2456789999999999999988754 22211 111 1233 33455889999 8
Q ss_pred eecCCc----hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Q 014108 174 VLEAFP----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVR 249 (430)
Q Consensus 174 ~~~~~~----~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~ 249 (430)
++|||. +.+.++++.|++|++++++++++|+||||||| || ++ .+.++|..|+++||++|++
T Consensus 78 SiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiD-wE----~p-----~~~~~~~~ll~~Lr~~~~~----- 142 (256)
T cd06546 78 MLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLD-VE----EP-----MSLDGIIRLIDRLRSDFGP----- 142 (256)
T ss_pred EECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEe-ee----cC-----CCHhHHHHHHHHHHHHhCC-----
Confidence 889985 34557899999999999999999999999999 87 32 2456899999999999964
Q ss_pred cCCcceEEEEEECCCCCCCCCC-CCCCccCHHHHhc----cccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCC
Q 014108 250 NRKQHLQLVYVIGPPHSEKFQP-HDFGPVDLQSLSD----AVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGI 324 (430)
Q Consensus 250 ~~~~~~~lsvavpp~~~~~~~~-~~~~~~d~~~l~~----~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~ 324 (430)
++.|+++.++.. -..+ ..+..+|+..+.+ ++|++++|.||.++.. . .+-.|. .++.
T Consensus 143 ----~~~lT~Ap~~~~--~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~-~---~~~~~~----~~~~----- 203 (256)
T cd06546 143 ----DFIITLAPVASA--LTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSM-S---SPSDYD----AIVA----- 203 (256)
T ss_pred ----CcEEEECCcccc--ccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCc-c---CHHHHH----HHHH-----
Confidence 567776543321 1111 2345678888764 9999999999976541 1 122332 2222
Q ss_pred CCCCCCCcEEEeecc
Q 014108 325 GTRSLARKIFLGINF 339 (430)
Q Consensus 325 ~~~ip~~KivlGipf 339 (430)
.+.|++||++|+|.
T Consensus 204 -~~~~~~Kv~iGlpa 217 (256)
T cd06546 204 -QGWDPERIVIGLLT 217 (256)
T ss_pred -cCCCcccEEEEEec
Confidence 36899999999996
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.89 E-value=3.6e-21 Score=190.76 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=149.4
Q ss_pred ccEEEEEcCCCCCC--cc-hhhccCCCCcEEEEEEEEEeeCCcee-eec---CCCCC-ChH---HHHHHHhCCCcEEeEE
Q 014108 105 YPVLAYITPWNSKG--YE-LAKMFNSKFTHLSPVWYDLKSQGTSL-ILE---GRHNA-DAG---WLLELRKGDALVLPRV 173 (430)
Q Consensus 105 ~~vlgY~~~w~~~~--y~-~~~~~~~klT~vsp~w~~i~~~g~~~-~~~---g~~d~-d~~---~l~~~~~~~~kv~p~v 173 (430)
++++||++.|+... .. ..+...+.+|||.+.++.+..++... .+. +.... ... -+..+|++++||+ +
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~G~KVl--l 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAKGKKVL--I 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHCCCEEE--E
Confidence 36899999997532 11 23445589999999999998876532 211 11111 122 3444566789999 6
Q ss_pred eecCCch-hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCC
Q 014108 174 VLEAFPK-ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRK 252 (430)
Q Consensus 174 ~~~~~~~-~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~ 252 (430)
+++||.. ..+.+++.|++|++++++++++|+||||||| ||.... . ...++++++|+.||++||++|++
T Consensus 79 SiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD-~E~~~~-~-~~~~~~~~~~~~~lk~lr~~~~~-------- 147 (312)
T cd02871 79 SIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDID-LESGSN-P-LNATPVITNLISALKQLKDHYGP-------- 147 (312)
T ss_pred EEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEe-cccCCc-c-CCcHHHHHHHHHHHHHHHHHcCC--------
Confidence 7889873 4578999999999999999999999999999 884211 0 01357899999999999999974
Q ss_pred cceEEEEEECCCCCCCC---CCCCCCcc--CHHHHhccccEEEEecccCCCC-CCCCCCCChhh--HHHHHHHHhcCCC-
Q 014108 253 QHLQLVYVIGPPHSEKF---QPHDFGPV--DLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKW--ISFTLQLLLGSPG- 323 (430)
Q Consensus 253 ~~~~lsvavpp~~~~~~---~~~~~~~~--d~~~l~~~vD~v~lMtYD~~~~-~~pgp~APl~~--v~~~v~~~~~~~~- 323 (430)
++.||++...+..... .....+.| ...++..++|++++|.||.++. +..+....-.+ ....+...+....
T Consensus 148 -~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd02871 148 -NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCDGQSYSQGTADFLVALADMLLTGFP 226 (312)
T ss_pred -CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcccccccCCccchhHHHHHHHHHHHcCCC
Confidence 6788877322211100 00011223 3678889999999999998753 11111111011 1111111221110
Q ss_pred -----CCCCCCCCcEEEeecccccccccCCCCcccCHHHHHHHHH
Q 014108 324 -----IGTRSLARKIFLGINFYGNDFVLSEGGGAITGREYLNLLQ 363 (430)
Q Consensus 324 -----~~~~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~l~~ 363 (430)
...++|++||+||+|..-. ..+++.++..++.+.+.
T Consensus 227 ~~~~~~~~~~p~~Kv~iG~pa~~~----aa~~gyv~~~~l~~~i~ 267 (312)
T cd02871 227 IAGNDRFPPLPADKVVIGLPASPS----AAGGGYVSPSEVIKALD 267 (312)
T ss_pred ccCCcccccCChhhEEEeccCCCC----ccCCCccCHHHHHHHHH
Confidence 0024899999999998632 11234566655544443
No 20
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.89 E-value=8.5e-22 Score=188.85 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=134.1
Q ss_pred chhhccCCC--CcEEEEEEE-EEee-----CCceeeecCCCCCChHHHHHHHh--CCCcEEeEEeecCCch---hhcCCH
Q 014108 120 ELAKMFNSK--FTHLSPVWY-DLKS-----QGTSLILEGRHNADAGWLLELRK--GDALVLPRVVLEAFPK---ELLRKK 186 (430)
Q Consensus 120 ~~~~~~~~k--lT~vsp~w~-~i~~-----~g~~~~~~g~~d~d~~~l~~~~~--~~~kv~p~v~~~~~~~---~~l~~~ 186 (430)
...+++..+ +|||++.+. .... +|..............-+..+|+ +++||+ +++|||.. .+..++
T Consensus 14 ~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvl--lSiGG~~~~~~~~~~~~ 91 (253)
T cd06544 14 TFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVV--ISIGGRGVQNNPTPFDP 91 (253)
T ss_pred cccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEE--EEeCCCCCCCCccccCc
Confidence 345566666 999999988 3433 22221111111112345667777 678998 88999962 344444
Q ss_pred H----HHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEC
Q 014108 187 K----LRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (430)
Q Consensus 187 ~----~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavp 262 (430)
. .|++|++++++++++||||||||| || ++ +.|+++|+.||++|+++|++ +++++.++++
T Consensus 92 ~~~~~~~~~fv~S~~~~l~~~~fDGiDiD-wE----~~----~~d~~~f~~ll~~l~~~l~~--------~~~lt~a~va 154 (253)
T cd06544 92 SNVDSWVSNAVSSLTSIIQTYNLDGIDID-YE----HF----PADPDTFVECIGQLITELKN--------NGVIKVASIA 154 (253)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCceeee-cc----cC----CcCHHHHHHHHHHHHHHhhh--------cCCeEEEEec
Confidence 4 455669999999999999999999 77 32 45789999999999999987 3566666666
Q ss_pred CCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEeeccccc
Q 014108 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGN 342 (430)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~ 342 (430)
|.... . ..+.+..+.+++|++.+|+|||++... |..+-.++ +..+.+. .+.|++||++|+|.+++
T Consensus 155 p~~~~-----~-~~~y~~~~~~~~d~id~~~~qfy~~~~--~~~~~~~~-~~~~~~~------~~~p~~Kv~lGl~a~~~ 219 (253)
T cd06544 155 PSEDA-----E-QSHYLALYNAYGDYIDYVNYQFYNYGV--PTTVAKYV-EFYDEVA------NNYPGKKVLASFSTDGE 219 (253)
T ss_pred CCccc-----c-ccccHHHHHHhhCceeEEEhhhhCCCC--CCCHHHHH-HHHHHHH------hCCCcccEEEEEecCCC
Confidence 64321 0 235588889999999999999987633 33444443 2334444 46899999999999998
Q ss_pred ccc
Q 014108 343 DFV 345 (430)
Q Consensus 343 ~w~ 345 (430)
.|.
T Consensus 220 ~~~ 222 (253)
T cd06544 220 DGA 222 (253)
T ss_pred ccC
Confidence 885
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.83 E-value=2.5e-19 Score=172.72 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=136.7
Q ss_pred cEEEEEcCCCCCC---cchhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeecCCc--h
Q 014108 106 PVLAYITPWNSKG---YELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFP--K 180 (430)
Q Consensus 106 ~vlgY~~~w~~~~---y~~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~~~~--~ 180 (430)
.++||+..|...+ ...+..-.+.+++|+.+...++.++... +....+.....+..++++|+||+ +++++|. .
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~~pds~D~v~lf~~~~~~~~~~~-~~~~~~~~~~~i~~l~~kG~KVl--~sigg~~~~~ 78 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLNLPDSVDMVSLFAANINLDAATA-VQFLLTNKETYIRPLQAKGTKVL--LSILGNHLGA 78 (255)
T ss_pred eEEEEEEecCCcCcccccccccCCCcceEEEEcccccCcccccc-hhhhhHHHHHHHHHHhhCCCEEE--EEECCCCCCC
Confidence 4689999997422 1223444577888887544444332100 00001123456666777899999 5667765 2
Q ss_pred h--hcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEE
Q 014108 181 E--LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLV 258 (430)
Q Consensus 181 ~--~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~ls 258 (430)
. ...+++.|++|++++++++++||||||||| ||+.........+.++++|..|+++||++|++ .+++|+
T Consensus 79 ~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD-~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~--------~~kllt 149 (255)
T cd06542 79 GFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFD-DEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP--------TDKLLT 149 (255)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHhCCCceEEe-eeecccCCCCCCcchHHHHHHHHHHHHHHhCc--------CCcEEE
Confidence 2 467889999999999999999999999999 88432110000245889999999999999975 368899
Q ss_pred EEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEeec
Q 014108 259 YVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGIN 338 (430)
Q Consensus 259 vavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGip 338 (430)
++.+|... . .+..++++++|++++|+||.+.... +. ++... ..++|++|+++|++
T Consensus 150 ~~~~~~~~------~---~~~~~~~~~vDyv~~~~y~~~~~~~-~~------------~~~~~---~~g~~~~k~i~~~~ 204 (255)
T cd06542 150 IDGYGQAL------S---NDGEEVSPYVDYVIYQYYGSSSSST-QR------------NWNTN---SPKIPPEKMVYTES 204 (255)
T ss_pred EEecCCch------h---cCHHHHHHhCCEEEeeccCCCCccC-Cc------------ccccc---cCCCCHHHceeeee
Confidence 99887431 1 1789999999999999999765421 11 11111 16799999999999
Q ss_pred cccc
Q 014108 339 FYGN 342 (430)
Q Consensus 339 fYG~ 342 (430)
|++.
T Consensus 205 ~~~~ 208 (255)
T cd06542 205 FEEE 208 (255)
T ss_pred eecc
Confidence 9964
No 22
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.72 E-value=3.2e-16 Score=153.47 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=111.4
Q ss_pred CCCCcEEEEEEEEEeeCCceeeecCCCCCC-----hHHHHHHHhCCCcEEeEEeecCCch-hhcCCHHHHHHHHHHHHHH
Q 014108 126 NSKFTHLSPVWYDLKSQGTSLILEGRHNAD-----AGWLLELRKGDALVLPRVVLEAFPK-ELLRKKKLRDKAIDLILTE 199 (430)
Q Consensus 126 ~~klT~vsp~w~~i~~~g~~~~~~g~~d~d-----~~~l~~~~~~~~kv~p~v~~~~~~~-~~l~~~~~R~~fi~~iv~~ 199 (430)
...++||...|.....+++. ...|....+ ..-+..+|+.|.||+ |++|||.. .+..+...|++|++++.++
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~-~w~g~~~~~~~~~~~~~i~~lk~~G~kVi--iS~GG~~g~~~~~~~~~~~~~~~a~~~~ 99 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKP-AWGGSYPLDQGGWIKSDIAALRAAGGDVI--VSFGGASGTPLATSCTSADQLAAAYQKV 99 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcc-cCCCCCCcccchhHHHHHHHHHHcCCeEE--EEecCCCCCccccCcccHHHHHHHHHHH
Confidence 46899999999887755553 223322222 234566677778898 88999984 4566788999999999999
Q ss_pred HHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCH
Q 014108 200 CKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDL 279 (430)
Q Consensus 200 l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~ 279 (430)
+.+|+||||||| || ++...+....+++...|++|+++++ ++.|++++|.... +....++++
T Consensus 100 i~~y~~dgiDfD-iE----~~~~~d~~~~~~~~~al~~Lq~~~p----------~l~vs~Tlp~~p~----gl~~~g~~~ 160 (294)
T cd06543 100 IDAYGLTHLDFD-IE----GGALTDTAAIDRRAQALALLQKEYP----------DLKISFTLPVLPT----GLTPDGLNV 160 (294)
T ss_pred HHHhCCCeEEEe-cc----CCccccchhHHHHHHHHHHHHHHCC----------CcEEEEecCCCCC----CCChhHHHH
Confidence 999999999999 77 3332223345788999999998874 5788888875321 111235678
Q ss_pred HHHhc----cccEEEEecccCCCC
Q 014108 280 QSLSD----AVDGFSLMTYDFSGP 299 (430)
Q Consensus 280 ~~l~~----~vD~v~lMtYD~~~~ 299 (430)
-+.++ .+|+||||||||+++
T Consensus 161 l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 161 LEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHHcCCCcceeeeeeecCCCC
Confidence 88888 899999999999864
No 23
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.60 E-value=3.6e-14 Score=138.11 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=99.5
Q ss_pred HHHHHHHhCCCcEEeEEeecCCc-hhhcCCHHHHHHHHHHHHHHHH------------hcCCCeEEeccccccccCCCCC
Q 014108 157 GWLLELRKGDALVLPRVVLEAFP-KELLRKKKLRDKAIDLILTECK------------EMEYDGIVLESWSTWTAYGILH 223 (430)
Q Consensus 157 ~~l~~~~~~~~kv~p~v~~~~~~-~~~l~~~~~R~~fi~~iv~~l~------------~~gfDGIdiD~W~~~~~~e~~~ 223 (430)
.-|+.++++++||| ++++||. ..-+.+++.|++|+++|.++.. +++||||||| || ++.
T Consensus 63 ~dI~~cq~~G~KVl--LSIGG~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D-~E----~~~-- 133 (280)
T cd02877 63 ADIKHCQSKGKKVL--LSIGGAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFD-IE----HGS-- 133 (280)
T ss_pred HHHHHHHHCCCEEE--EEccCCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEe-cc----cCC--
Confidence 34555666899999 8889987 3345889999999999988752 5679999999 77 332
Q ss_pred CHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhc-cccEEEEecccCCCCC-C
Q 014108 224 DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSD-AVDGFSLMTYDFSGPH-N 301 (430)
Q Consensus 224 ~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~-~vD~v~lMtYD~~~~~-~ 301 (430)
..+|..|+++||+.+.+.. .+++.||+|.+.+. -+.+.-..+.. ++|+++||.||...-. .
T Consensus 134 ----~~~~~~l~~~LR~~~~~~~-----~~~~~LTaAPq~~~--------~d~~~~~~i~~~~~D~i~vqfYn~~~c~~~ 196 (280)
T cd02877 134 ----PENYDALAKRLRSLFASDP-----SKKYYLTAAPQCPY--------PDASLGDAIATGLFDFIFVQFYNNPCCSYA 196 (280)
T ss_pred ----ccCHHHHHHHHHHHhhccc-----CCceEEEeccccCC--------cchhHHHHHccCccCEEEEEEecCcccccc
Confidence 1579999999999997521 13678877732211 11244455654 8999999999964321 1
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCCCC---CCcEEEeecccc
Q 014108 302 PGPNAPLKWISFTLQLLLGSPGIGTRSL---ARKIFLGINFYG 341 (430)
Q Consensus 302 pgp~APl~~v~~~v~~~~~~~~~~~~ip---~~KivlGipfYG 341 (430)
++-.+. .....+.|.. .++ ..||+||+|..-
T Consensus 197 ~~~~~~---~~~~~~~w~~------~~~~~~~~kv~lGlpas~ 230 (280)
T cd02877 197 SGNASG---FNFNWDTWTS------WAKATSNAKVFLGLPASP 230 (280)
T ss_pred ccccch---hhhHHHHHHH------hcccCCCceEEEecccCC
Confidence 111111 1223333432 234 489999999873
No 24
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.97 E-value=1e-08 Score=102.49 Aligned_cols=159 Identities=17% Similarity=0.249 Sum_probs=109.8
Q ss_pred ChHHHHHHHhCCCcEEeEEeecCCc-----hhhcCC-HHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCC-CHHH
Q 014108 155 DAGWLLELRKGDALVLPRVVLEAFP-----KELLRK-KKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILH-DPEL 227 (430)
Q Consensus 155 d~~~l~~~~~~~~kv~p~v~~~~~~-----~~~l~~-~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~-~~~d 227 (430)
+.+|+..+|++|+||++.|.++.-. +.+|.+ ++.+.++|+.|+++|+.|||||+.|| +|... .+++
T Consensus 48 p~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN-------~E~~~~~~~~ 120 (339)
T cd06547 48 PADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLIN-------IETELGDAEK 120 (339)
T ss_pred CcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEee-------eeccCCcHHH
Confidence 5889999999999999988655311 578888 99999999999999999999999999 45543 5789
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCC---CCccCHHHHhccccEEEEecccCCCCCCCCC
Q 014108 228 RNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHD---FGPVDLQSLSDAVDGFSLMTYDFSGPHNPGP 304 (430)
Q Consensus 228 ~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~---~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp 304 (430)
++++..|+++|++++++.. .+..+.--=.- ...+.-.| ....+..-+ +.+|.+.+ +|.+..
T Consensus 121 ~~~l~~F~~~L~~~~~~~~------~~~~v~WYDs~--t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl---NY~W~~---- 184 (339)
T cd06547 121 AKRLIAFLRYLKAKLHENV------PGSLVIWYDSM--TEDGKLSWQNELNSKNKPFF-DVCDGIFL---NYWWTE---- 184 (339)
T ss_pred HHHHHHHHHHHHHHHhhcC------CCcEEEEEecC--CCCCccchhhhhhHHHHHHH-hhhcceeE---ecCCCc----
Confidence 9999999999999999742 24444321111 00111001 122333333 67886655 444431
Q ss_pred CCChhhHHHHHHHHhcCCCCCCCCCCCcEEEeecccccccc
Q 014108 305 NAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFV 345 (430)
Q Consensus 305 ~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~ 345 (430)
...+..++.+.. .+..+.+|.+||-..|+...
T Consensus 185 ----~~l~~s~~~a~~-----~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 ----ESLERSVQLAEG-----LGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred ----chHHHHHHHHHH-----cCCCHhHEEEEEEEEcCCcc
Confidence 124445555554 46778999999999998765
No 25
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.4e-07 Score=88.11 Aligned_cols=218 Identities=15% Similarity=0.128 Sum_probs=116.1
Q ss_pred ccEEEEEcCCCCC---Ccch---h---hccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHh---CCCcEEeE
Q 014108 105 YPVLAYITPWNSK---GYEL---A---KMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK---GDALVLPR 172 (430)
Q Consensus 105 ~~vlgY~~~w~~~---~y~~---~---~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~---~~~kv~p~ 172 (430)
+..+||.-.|-+. +|+. + -...++=..+.-+.|... .|++.......+.|.++=.++.+ .|.-++
T Consensus 26 KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~-~g~iptf~P~~~~daeFr~~v~aLnaeGkavl-- 102 (332)
T COG3469 26 KVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKG-AGDIPTFKPYNDPDAEFRAQVGALNAEGKAVL-- 102 (332)
T ss_pred ceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeec-CCCCcccCcCCCCHHHHHHHHHHhhccCcEEE--
Confidence 4899999999643 3331 1 111222222333444333 44554433333345555555544 344355
Q ss_pred EeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCC
Q 014108 173 VVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRK 252 (430)
Q Consensus 173 v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~ 252 (430)
++++|-+..+--+...-+.|+++|+.++++|||||+|||+ ||-+ .....+.. -....++.+++--+.
T Consensus 103 lsLGGAdghIeL~~~qE~~fv~eiirlietyGFDGLDiDL-Eq~a-i~~~dnq~---v~p~alk~vk~hyk~-------- 169 (332)
T COG3469 103 LSLGGADGHIELKAGQEQAFVNEIIRLIETYGFDGLDIDL-EQSA-ILAADNQT---VIPAALKAVKDHYKN-------- 169 (332)
T ss_pred EEccCccceEEeccchHHHHHHHHHHHHHHhCCCccccch-hhhh-hhhcCCee---ehHHHHHHHHHHHHh--------
Confidence 7888876322222223678999999999999999999993 3311 00000111 223455555555444
Q ss_pred cceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCC--CCCCCCChhhHHHHH----HHHhcC----C
Q 014108 253 QHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH--NPGPNAPLKWISFTL----QLLLGS----P 322 (430)
Q Consensus 253 ~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~--~pgp~APl~~v~~~v----~~~~~~----~ 322 (430)
.+.-+.++++|..+.-+....|.. -+.+|..+.|++...-|.-.|.+ ..-.++++......+ -|.+.. +
T Consensus 170 ~Gk~f~itMAPEfPYl~~~gaY~p-yin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~kesfly~~~~slanG 248 (332)
T COG3469 170 QGKNFFITMAPEFPYLQGWGAYIP-YINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMVKESFLYYLTFSLANG 248 (332)
T ss_pred cCCceEEEecCCCceecCCcccch-HHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHHHHhHHHHhhhhhhcC
Confidence 233344555564332222112211 26788889999999999877652 222344444333222 222211 1
Q ss_pred CC-CCCCCCCcEEEeecc
Q 014108 323 GI-GTRSLARKIFLGINF 339 (430)
Q Consensus 323 ~~-~~~ip~~KivlGipf 339 (430)
.+ -..+|.+|+++|+|.
T Consensus 249 tr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 249 TRGFEKIPADKFAIGLPS 266 (332)
T ss_pred cccceecccceeEEecCC
Confidence 10 135899999999996
No 26
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.18 E-value=1.1e-05 Score=80.12 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=94.9
Q ss_pred ChHHHHHHHhCCCcEEeEEeecCCc------hhhcC-CHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHH
Q 014108 155 DAGWLLELRKGDALVLPRVVLEAFP------KELLR-KKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPEL 227 (430)
Q Consensus 155 d~~~l~~~~~~~~kv~p~v~~~~~~------~~~l~-~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d 227 (430)
..+|+..+|++|++|+=.|.++ |. ..++. ++.....+++.|+++++.|||||.-|. || ... ..+.+
T Consensus 44 ~~~widaAHrnGV~vLGTiife-~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN-~E----~~~-~~~~~ 116 (311)
T PF03644_consen 44 PAGWIDAAHRNGVKVLGTIIFE-WGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLIN-IE----TPL-SGPED 116 (311)
T ss_dssp -HHHHHHHHHTT--EEEEEEEE-EE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEE-EE----ESS-TTGGG
T ss_pred CchhHHHHHhcCceEEEEEEec-CCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEE-ec----ccC-CchhH
Confidence 5779999999999998766653 32 46777 888889999999999999999999999 54 221 12268
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEE--ECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCC
Q 014108 228 RNMALEFIKQLGNALHSVNSVRNRKQHLQLVYV--IGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPN 305 (430)
Q Consensus 228 ~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsva--vpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~ 305 (430)
.+++..|+++|++++++ . .+..+.-- +.....-..+.. ....+. ...+.+|.+.+ +|.+.
T Consensus 117 ~~~l~~F~~~l~~~~~~-~------~~~~v~WYDs~t~~G~l~~qn~-Ln~~N~-~f~~~~d~iFl---NY~W~------ 178 (311)
T PF03644_consen 117 AENLIDFLKYLRKEAHE-N------PGSEVIWYDSVTNSGRLSWQNE-LNDKNK-PFFDVCDGIFL---NYNWN------ 178 (311)
T ss_dssp HHHHHHHHHHHHHHHHH-T-------T-EEEEES-B-SSSSB---SS-S-TTTG-GGBES-SEEEE----S--S------
T ss_pred HHHHHHHHHHHHHHhhc-C------CCcEEEEeecCCcCCccchHHH-HHhhCc-chhhhcceeeE---ecCCC------
Confidence 88999999999999996 2 24444332 221100001111 111221 22567888776 56654
Q ss_pred CChhhHHHHHHHHhcCCCCCCCCCCCcEEEeecccccc
Q 014108 306 APLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGND 343 (430)
Q Consensus 306 APl~~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~ 343 (430)
-.-++.+++.+.. .+.+|.+|.+||-..|+.
T Consensus 179 --~~~l~~s~~~A~~-----~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 --PDSLESSVANAKS-----RGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp --HHHHHHHHHHHHH-----HTS-GGGEEEEEEHHHHT
T ss_pred --cccHHHHHHHHHH-----cCCCHHHEEEEEEEEcCC
Confidence 1226777777765 567889999999999998
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.66 E-value=0.00025 Score=70.42 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEec--cccc-cccCC--------------CCCCHHH-------HHHHHHHHHHHH
Q 014108 184 RKKKLRDKAIDLILTECKEMEYDGIVLE--SWST-WTAYG--------------ILHDPEL-------RNMALEFIKQLG 239 (430)
Q Consensus 184 ~~~~~R~~fi~~iv~~l~~~gfDGIdiD--~W~~-~~~~e--------------~~~~~~d-------~~~~~~fl~eLr 239 (430)
..|+.|+-+++-+.+++++|.+|||.|| +.-+ -.++. ....++| +++-+.||++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999 2100 00110 1123455 788999999999
Q ss_pred HHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHh--ccccEEEEecccCCCCCCCCCCCChhhHHHHHHH
Q 014108 240 NALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLS--DAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQL 317 (430)
Q Consensus 240 ~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~--~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~ 317 (430)
+++++.+ ..+.++++..+.... ....-..|...-. .++|++..|.|-..-+ .....++..+.+
T Consensus 214 ~~ik~~k------P~v~~sisp~g~~~~---~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~------~~~~~~~~~~~~ 278 (311)
T PF02638_consen 214 DAIKAIK------PWVKFSISPFGIWNS---AYDDYYQDWRNWLKEGYIDYIVPQIYWSDFS------HFTAPYEQLAKW 278 (311)
T ss_pred HHHHHhC------CCCeEEEEeecchhh---hhhheeccHHHHHhcCCccEEEeeecccccc------hhHHHHHHHHHH
Confidence 9999863 567777765432200 0001123444433 5799999999954221 112235666777
Q ss_pred HhcCCCCCCCCCCCcEEEeecccccc
Q 014108 318 LLGSPGIGTRSLARKIFLGINFYGND 343 (430)
Q Consensus 318 ~~~~~~~~~~ip~~KivlGipfYG~~ 343 (430)
+.+.. .-..-+|.+|+.+|-..
T Consensus 279 w~~~~----~~~~v~ly~G~~~y~~~ 300 (311)
T PF02638_consen 279 WAKQV----KPTNVHLYIGLALYKVG 300 (311)
T ss_pred HHHhh----cCCCceEEEccCcCCCC
Confidence 76421 12345899999999643
No 28
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.64 E-value=0.00059 Score=61.66 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECC
Q 014108 185 KKKLRDKAIDLILTECKE-MEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP 263 (430)
Q Consensus 185 ~~~~R~~fi~~iv~~l~~-~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp 263 (430)
+++..++..+.+.+.-.. +...||.|| |.. .......|..||++||++|.. ++.||++.=|
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQID-------fDa--~t~~L~~Y~~fL~~LR~~LP~---------~~~LSIT~L~ 83 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQID-------FDA--ATSRLPAYAQFLQQLRQRLPP---------DYRLSITALP 83 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEe-------cCc--cccchHHHHHHHHHHHHhCCC---------CceEeeEEeh
Confidence 455555555554444433 357999999 664 345668899999999999985 6778877654
Q ss_pred CCCCCCCCCCCCccC-HHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEEeeccccc
Q 014108 264 PHSEKFQPHDFGPVD-LQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGN 342 (430)
Q Consensus 264 ~~~~~~~~~~~~~~d-~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~ 342 (430)
. |...-+ +..|...||.+.+|+|- |. . -+...-.|+-.. ++.. --.-+|+|-||
T Consensus 84 d--------W~~~~~~L~~L~~~VDE~VlQ~yq--Gl-----~----d~~~~~~yl~~l----~~l~-~PFriaLp~yG- 138 (181)
T PF11340_consen 84 D--------WLSSPDWLNALPGVVDELVLQVYQ--GL-----F----DPPNYARYLPRL----ARLT-LPFRIALPQYG- 138 (181)
T ss_pred h--------hhcCchhhhhHhhcCCeeEEEeec--CC-----C----CHHHHHHHHHHH----hcCC-CCeEEecCcCC-
Confidence 2 444445 88999999999999992 21 1 122233333221 1233 55789999999
Q ss_pred ccc
Q 014108 343 DFV 345 (430)
Q Consensus 343 ~w~ 345 (430)
.|.
T Consensus 139 e~e 141 (181)
T PF11340_consen 139 EWE 141 (181)
T ss_pred ccC
Confidence 454
No 29
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=97.50 E-value=0.00082 Score=67.44 Aligned_cols=173 Identities=21% Similarity=0.329 Sum_probs=114.6
Q ss_pred ChHHHHHHHhCCCcEEeEEeecCCc------hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHH
Q 014108 155 DAGWLLELRKGDALVLPRVVLEAFP------KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELR 228 (430)
Q Consensus 155 d~~~l~~~~~~~~kv~p~v~~~~~~------~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~ 228 (430)
..+|.+.+|++|++|+=.+ +..|+ +++|++++.-+.-++.++++++-.||||--|++ |+..+....
T Consensus 113 P~~wtn~AHrHGV~vlGTF-ItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNi-------En~i~~~~i 184 (526)
T KOG2331|consen 113 PPGWTNTAHRHGVKVLGTF-ITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINI-------ENKIDLAKI 184 (526)
T ss_pred CCcccchhhhcCceeeeeE-EEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEe-------eeccChhhC
Confidence 5789999999999998655 34464 588999999999999999999999999988883 554466677
Q ss_pred HHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCC--ccCHHHHhccccEEEEecccCCCCCCCCCCC
Q 014108 229 NMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFG--PVDLQSLSDAVDGFSLMTYDFSGPHNPGPNA 306 (430)
Q Consensus 229 ~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~--~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~A 306 (430)
.++..|++.|.+++|+.. ..++.+-..--.. .++-.|-+ ...-+..-+.||.+ .|.|.|--..
T Consensus 185 ~~l~~F~~~Lt~~~~~~~-----p~~~ViWYDSV~~---~G~L~WQ~eLne~N~~Ffd~cdg~-~~NY~Wke~~------ 249 (526)
T KOG2331|consen 185 PNLIQFVSHLTKVLHSSV-----PGGLVIWYDSVTD---DGQLHWQNELNEMNRKFFDACDGI-FMNYNWKEKH------ 249 (526)
T ss_pred ccHHHHHHHHHHHHhhcC-----CCceEEEEeeeee---cCeeehhhhhhhhcchhhhhccee-eeecccccch------
Confidence 889999999999999742 2345443221110 11111111 12223455678876 4666653220
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCCCcEEEeecccccccccCCCCcccCHHHHHHHHHhCCC
Q 014108 307 PLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGGAITGREYLNLLQKHKP 367 (430)
Q Consensus 307 Pl~~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~l~~~~~~ 367 (430)
.+...+.+ +-.+..+.|||--+||.-. || ..-.+.++++++++.
T Consensus 250 ----l~rsa~~~--------~~~r~~v~~GiDVf~Rg~~---gg--f~~~~s~~L~k~~~~ 293 (526)
T KOG2331|consen 250 ----LERSAEQA--------GDRRHRVFMGIDVFGRGCV---GG--FHCDQSLELIKKNGF 293 (526)
T ss_pred ----HHHHHHhh--------hhhhhceEEEeEEEecccc---cc--cchhHHHHHHHHcCc
Confidence 12222222 3457899999999998632 23 444567788888764
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.87 E-value=0.023 Score=56.42 Aligned_cols=134 Identities=17% Similarity=0.132 Sum_probs=87.9
Q ss_pred hHHHHHHHhCCCcEEeEEeecC----------Cc-------------hhhcC---CHHHHHHHHHHHHHHHHhcCCCeEE
Q 014108 156 AGWLLELRKGDALVLPRVVLEA----------FP-------------KELLR---KKKLRDKAIDLILTECKEMEYDGIV 209 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~----------~~-------------~~~l~---~~~~R~~fi~~iv~~l~~~gfDGId 209 (430)
+.+++.+|++|+-++-||+.-. |. ....- +++.++-.++ |...+.+.|||.|.
T Consensus 64 ~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~-IA~Eaa~~GFdEIq 142 (316)
T PF13200_consen 64 KALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNID-IAKEAAKLGFDEIQ 142 (316)
T ss_pred HHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHH-HHHHHHHcCCCEEE
Confidence 4577888888887777776321 11 11122 3455665554 67777788999999
Q ss_pred eccccccc-------cCCCCCCHH-HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHH
Q 014108 210 LESWSTWT-------AYGILHDPE-LRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQS 281 (430)
Q Consensus 210 iD~W~~~~-------~~e~~~~~~-d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~ 281 (430)
+|--.... .|.....++ -.+..+.||+..+++|++ .+..+++.|.+...... ....-+.+++.
T Consensus 143 fDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~--------~~v~vSaDVfG~~~~~~-~~~~iGQ~~~~ 213 (316)
T PF13200_consen 143 FDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHP--------YGVPVSADVFGYVAWSP-DDMGIGQDFEK 213 (316)
T ss_pred eeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhH--------cCCCEEEEecccccccC-CCCCcCCCHHH
Confidence 99322111 011111111 336788999999999997 47789999987532211 12233789999
Q ss_pred HhccccEEEEecccCCCC
Q 014108 282 LSDAVDGFSLMTYDFSGP 299 (430)
Q Consensus 282 l~~~vD~v~lMtYD~~~~ 299 (430)
|+++||++.-|-|=-|+.
T Consensus 214 ~a~~vD~IsPMiYPSh~~ 231 (316)
T PF13200_consen 214 IAEYVDYISPMIYPSHYG 231 (316)
T ss_pred HhhhCCEEEecccccccC
Confidence 999999999999987765
No 31
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=96.47 E-value=0.0025 Score=43.80 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=23.1
Q ss_pred eeccCCCchhHHHHhCcccCCCCHHHHHHHcCC
Q 014108 61 YSTRANRSATHMHQRGLVKTDVNYQEILTENSK 93 (430)
Q Consensus 61 ~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~ 93 (430)
|+|++|||+++|+++ ++++.++|.+.|+.
T Consensus 1 y~V~~gDtl~~IA~~----~~~~~~~l~~~N~~ 29 (44)
T PF01476_consen 1 YTVQPGDTLWSIAKR----YGISVDELMELNPN 29 (44)
T ss_dssp EEE-TT--HHHHHHH----TTS-HHHHHHHCCT
T ss_pred CEECcCCcHHHHHhh----hhhhHhHHHHhcCC
Confidence 789999999999999 99999999999933
No 32
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=96.15 E-value=0.0021 Score=53.24 Aligned_cols=36 Identities=6% Similarity=-0.049 Sum_probs=27.3
Q ss_pred eeEEeeccCCCchhHHHHhCcccCCCC--------HHHHHHHcCCCCC
Q 014108 57 YCTKYSTRANRSATHMHQRGLVKTDVN--------YQEILTENSKVSE 96 (430)
Q Consensus 57 ~~~~~~~~~gdt~~~i~~~~lv~~~~~--------~~~il~~~~~~~~ 96 (430)
...+|+|++|||+|+|+++ ++++ ++.|.+.|...+.
T Consensus 35 ~~~~~tV~~GDTLW~IA~~----y~~~~~l~~~~~v~~I~~~N~l~~~ 78 (103)
T PRK14125 35 QYVEITVQEGDTLWALADQ----YAGKHHMAKNEFIEWVEDVNNLPSG 78 (103)
T ss_pred CcEEEEECCCCCHHHHHHH----hCCCcCCCHHHHHHHHHHhcCCCCC
Confidence 4678999999999999999 7654 4566666765543
No 33
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=95.87 E-value=0.36 Score=48.35 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=97.6
Q ss_pred HHhCCCcEEeEEeecCCc-hhhcCCHHHHHHHHHHHHHHHHh-------cC---CCeEEeccccccccCCCCCCHHHHHH
Q 014108 162 LRKGDALVLPRVVLEAFP-KELLRKKKLRDKAIDLILTECKE-------ME---YDGIVLESWSTWTAYGILHDPELRNM 230 (430)
Q Consensus 162 ~~~~~~kv~p~v~~~~~~-~~~l~~~~~R~~fi~~iv~~l~~-------~g---fDGIdiD~W~~~~~~e~~~~~~d~~~ 230 (430)
....|+||| +++||.. .-.+++.+.-+.|++.+-+..-. .| .||+|+|+ |.. .+ ..
T Consensus 99 CQS~GiKVl--LSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~I-------E~g-~~---~~ 165 (568)
T KOG4701|consen 99 CQSNGIKVL--LSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEI-------EKG-TN---TA 165 (568)
T ss_pred HHhcCeEEE--EeccCcccceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeee-------ecC-Cc---ch
Confidence 344789999 7778775 45778888888999988876532 11 69999994 432 22 35
Q ss_pred HHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHH-HHh-ccccEEEEecccCCCC-CCCCCCCC
Q 014108 231 ALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQ-SLS-DAVDGFSLMTYDFSGP-HNPGPNAP 307 (430)
Q Consensus 231 ~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~-~l~-~~vD~v~lMtYD~~~~-~~pgp~AP 307 (430)
|..|-+.|++.|... .+.+.|+.+=-.+.+ ..-+. .|. +-.||+.+.-|+-..= ...|..-
T Consensus 166 ysaLA~~L~~~Fa~~------~r~yYLsaAPQCP~P---------D~~~G~aL~~~~fDf~~IQFYNN~~CS~SsG~~Q- 229 (568)
T KOG4701|consen 166 YSALAKRLLEIFASD------PRRYYLSAAPQCPVP---------DHTLGKALSENSFDFLSIQFYNNSTCSGSSGSRQ- 229 (568)
T ss_pred HHHHHHHHHHHHccC------CceEEeccCCCCCCC---------chhhhhhhhccccceEEEEeecCCCcccccCccc-
Confidence 778889999999752 245555543222221 11122 222 2379999998875321 1122111
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCCc---EEEeecccccccccCCCCcccCHHH----HHHHHH---hCCCceEeec
Q 014108 308 LKWISFTLQLLLGSPGIGTRSLARK---IFLGINFYGNDFVLSEGGGAITGRE----YLNLLQ---KHKPALQWEK 373 (430)
Q Consensus 308 l~~v~~~v~~~~~~~~~~~~ip~~K---ivlGipfYG~~w~~~~g~~~i~~~~----~~~l~~---~~~~~~~wD~ 373 (430)
.-.+.=++|+. .+.++| ++||+|.-.. ..|.+.|+... .+..++ .+|.-.-||.
T Consensus 230 -~~fDsW~~ya~-------~~a~nKn~~lFLGLPg~~~----AAGSGYIsp~~Lt~~~l~~~a~S~~fGGv~LWd~ 293 (568)
T KOG4701|consen 230 -STFDAWVEYAE-------DSAYNKNTSLFLGLPGHQN----AAGSGYISPKNLTRDLLNYKANSTLFGGVTLWDT 293 (568)
T ss_pred -ccHHHHHHHHh-------hhcccccceEEeeccCCcc----cccCCccCchHHHHHHHHhhhhccccccEEEeec
Confidence 11222234553 355666 9999997642 23556666543 232222 2455566764
No 34
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=94.05 E-value=0.072 Score=35.33 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=28.1
Q ss_pred EeeccCCCchhHHHHhCcccCCCCHHHHHHHcCC
Q 014108 60 KYSTRANRSATHMHQRGLVKTDVNYQEILTENSK 93 (430)
Q Consensus 60 ~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~ 93 (430)
.|.+++|||+++|+++ ++++..+|.+.|+.
T Consensus 2 ~~~v~~gdt~~~ia~~----~~~~~~~~~~~N~~ 31 (46)
T cd00118 2 TYTVKKGDTLSSIAQR----YGISVEELLKLNGL 31 (46)
T ss_pred EEEECCCCCHHHHHHH----HCcCHHHHHHHcCC
Confidence 5889999999999999 99999999999876
No 35
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=93.98 E-value=0.047 Score=36.84 Aligned_cols=28 Identities=11% Similarity=0.370 Sum_probs=25.0
Q ss_pred ccCCCchhHHHHhCcccCCCCHHHHHHHcCCC
Q 014108 63 TRANRSATHMHQRGLVKTDVNYQEILTENSKV 94 (430)
Q Consensus 63 ~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~ 94 (430)
|++|||+|+|+++ +++++++|.+.|+..
T Consensus 1 v~~gdtl~~IA~~----~~~~~~~l~~~N~~~ 28 (44)
T TIGR02899 1 VQKGDTLWKIAKK----YGVDFDELIQANPQL 28 (44)
T ss_pred CCCCCCHHHHHHH----HCcCHHHHHHHhhcC
Confidence 5789999999999 999999999998643
No 36
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=93.86 E-value=0.88 Score=49.80 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEeccccc-cccCCCCC---------------------CHHH--------HHHHHHH
Q 014108 185 KKKLRDKAIDLILTECKEMEYDGIVLESWST-WTAYGILH---------------------DPEL--------RNMALEF 234 (430)
Q Consensus 185 ~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~-~~~~e~~~---------------------~~~d--------~~~~~~f 234 (430)
+|+.|+...+-..++++.+.||||-+| =.. +..||... +|+. .+.+..|
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~-Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f 517 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFH-DDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDF 517 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEec-ccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 567776665555666666899999996 111 12233220 1111 1235689
Q ss_pred HHHHHHHhhcccccccCCcceEEEEEECCC--CCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHH
Q 014108 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPP--HSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWIS 312 (430)
Q Consensus 235 l~eLr~~L~~~~~~~~~~~~~~lsvavpp~--~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~ 312 (430)
-.+|++.++... ...+...--+.+. .+. ....|| +.++..+.+.-|++.+|+.=|.-. .+.+ .+..|+.
T Consensus 518 ~~~l~~~v~~~~-----~~~~~tarni~a~~~l~p-~~e~w~-aQ~l~~~~~~yD~~a~mampyme~-~~~~-~~~~wl~ 588 (671)
T PRK14582 518 TLELSARVKAIR-----GPQVKTARNIFALPVIQP-ESEAWF-AQNLDDFLKSYDWTAPMAMPLMEG-VAEK-SSDAWLI 588 (671)
T ss_pred HHHHHHHHHhhc-----CccceeeccccccccCCh-hHHHHH-HhHHHHHHhhcchhhhhcchhhhc-cCcc-cHHHHHH
Confidence 999999987641 0122222222221 111 112355 578999999999999999554422 1222 4578999
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeecccccccccCCCCcccCHHHHHH---HHHhCC
Q 014108 313 FTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGGAITGREYLN---LLQKHK 366 (430)
Q Consensus 313 ~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~---l~~~~~ 366 (430)
+.++.+.+. -...+|+++-+.. ++|...+ ..+|+..+..+ +++++|
T Consensus 589 ~l~~~v~~~-----~~~~~k~vfelq~--~dw~~~~-~~~i~~~~l~~~~~~l~~~g 637 (671)
T PRK14582 589 QLVNQVKNI-----PGALDKTIFELQA--RDWQKNG-QQAISSQQLAHWMSLLQLNG 637 (671)
T ss_pred HHHHHHHhc-----CCcccceEEEeec--cccccCC-CCCCCHHHHHHHHHHHHHcC
Confidence 999988742 2367999998876 4686332 34788776554 444444
No 37
>smart00257 LysM Lysin motif.
Probab=92.12 E-value=0.17 Score=32.95 Aligned_cols=28 Identities=14% Similarity=0.404 Sum_probs=26.3
Q ss_pred eeccCCCchhHHHHhCcccCCCCHHHHHHHcC
Q 014108 61 YSTRANRSATHMHQRGLVKTDVNYQEILTENS 92 (430)
Q Consensus 61 ~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~ 92 (430)
|.+++|||+++|+++ ++++..+|.+.|+
T Consensus 2 ~~v~~gdt~~~ia~~----~~~~~~~~~~~N~ 29 (44)
T smart00257 2 YTVKKGDTLSSIARR----YGISVSDLLELNN 29 (44)
T ss_pred eEeCCCCCHHHHHHH----hCCCHHHHHHHcC
Confidence 789999999999999 9999999999987
No 38
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=91.12 E-value=0.26 Score=48.94 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=31.8
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCCCC
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSEN 97 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~~~ 97 (430)
.-+|+|++|||||+|+.+ +++++++|.+.|....++
T Consensus 60 ~~~y~Vk~GDTL~~IA~~----~g~~~~~La~~N~l~~p~ 95 (319)
T PRK10871 60 GSTYTVKKGDTLFYIAWI----TGNDFRDLAQRNNIQAPY 95 (319)
T ss_pred CCceEECCCCHHHHHHHH----HCcCHHHHHHhcCCCCCc
Confidence 347999999999999998 999999999999886544
No 39
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=90.80 E-value=0.24 Score=51.85 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=31.0
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCC
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~ 95 (430)
..+|.|++|||+++|++| +++++++|++.|+...
T Consensus 402 ~~~Y~Vr~GDTL~sIA~k----ygVtv~~L~~~N~l~~ 435 (456)
T PRK10783 402 SITYRVRKGDSLSSIAKR----HGVNIKDVMRWNSDTA 435 (456)
T ss_pred ceeEEeCCCCCHHHHHHH----hCCCHHHHHHhcCCCC
Confidence 567999999999999999 9999999999998654
No 40
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=90.59 E-value=5.4 Score=38.99 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHHHHhc-CCCeEEeccccccccCCCC---CCH---HHHHHHHHHHHHHHHHhhcccccccCCcceEE
Q 014108 185 KKKLRDKAIDLILTECKEM-EYDGIVLESWSTWTAYGIL---HDP---ELRNMALEFIKQLGNALHSVNSVRNRKQHLQL 257 (430)
Q Consensus 185 ~~~~R~~fi~~iv~~l~~~-gfDGIdiD~W~~~~~~e~~---~~~---~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~l 257 (430)
+++.|+ .|.+|-+=+..| .||||-+.==--+..||.. .++ .-.+.+..|..+|++..+... .++..
T Consensus 117 ~p~~r~-~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r------p~lkT 189 (294)
T PF14883_consen 117 DPEARQ-IIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR------PDLKT 189 (294)
T ss_pred CHHHHH-HHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC------ccchh
Confidence 455554 567777777776 8999999200001113310 011 122457889999999988642 23322
Q ss_pred EEEECCC--CCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEE
Q 014108 258 VYVIGPP--HSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFL 335 (430)
Q Consensus 258 svavpp~--~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~Kivl 335 (430)
.--+.+. ... ....|| +.++..+.+.-|+..+|+.=|.-. ...|..|+.+.++.+.. ...+.+|+++
T Consensus 190 ARNiya~pvl~P-~se~Wf-AQnl~~fl~~YD~taimAMPymE~----~~~~~~WL~~Lv~~v~~-----~p~~l~KtvF 258 (294)
T PF14883_consen 190 ARNIYAEPVLNP-ESEAWF-AQNLDDFLKAYDYTAIMAMPYMEQ----AEDPEQWLAQLVDAVAA-----RPGGLDKTVF 258 (294)
T ss_pred hhcccccccCCc-chhhHH-HHhHHHHHHhCCeeheeccchhcc----ccCHHHHHHHHHHHHHh-----cCCcccceEE
Confidence 2222221 111 122355 578999999999999998776543 11688999999999885 3345799999
Q ss_pred eecccccccccCCCCcccCHHHHH---HHHHhCCC
Q 014108 336 GINFYGNDFVLSEGGGAITGREYL---NLLQKHKP 367 (430)
Q Consensus 336 GipfYG~~w~~~~g~~~i~~~~~~---~l~~~~~~ 367 (430)
-+.. ++|.. +.+|+..+.. +++++.|.
T Consensus 259 ELQa--~dwr~---~~~I~~~~L~~~m~~L~~~G~ 288 (294)
T PF14883_consen 259 ELQA--VDWRT---SKPIPSEELADWMRQLQLNGA 288 (294)
T ss_pred EEec--cCCcc---CCcCCHHHHHHHHHHHHHcCC
Confidence 8876 46874 4678877654 45555553
No 41
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=90.54 E-value=0.25 Score=39.41 Aligned_cols=51 Identities=8% Similarity=0.176 Sum_probs=25.5
Q ss_pred EEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCC-CCCCCCCCCCccEEEEEcC
Q 014108 59 TKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKV-SENASHRYYTYPVLAYITP 113 (430)
Q Consensus 59 ~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~-~~~~~~~~~~~~vlgY~~~ 113 (430)
..|+|++||||..|+.+ .|++.+++.+--... ...+=.+...+..+-|..+
T Consensus 3 ~~~~V~~GDtLs~iF~~----~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~~d 54 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRR----AGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQLD 54 (85)
T ss_dssp -EEE--TT--HHHHHHH----TT--HHHHHHHHHHGGGT--GGG--TT-EEEEEE-
T ss_pred cEEEECCCCcHHHHHHH----cCCCHHHHHHHHhccCccchHhhCCCCCEEEEEEC
Confidence 47999999999999999 999988885542111 1111122334677777665
No 42
>TIGR02907 spore_VI_D stage VI sporulation protein D. SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.
Probab=90.12 E-value=0.3 Score=48.33 Aligned_cols=35 Identities=6% Similarity=0.122 Sum_probs=31.1
Q ss_pred eeeEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCC
Q 014108 56 LYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKV 94 (430)
Q Consensus 56 ~~~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~ 94 (430)
+-...|.|++|||+++|++| ++++++.|.+.|+..
T Consensus 291 ~~~~~YiVq~GDTL~sIAkR----YGVSV~~L~r~N~L~ 325 (338)
T TIGR02907 291 TKLRMCIVQEGDTIETIAER----YEISVSQLIRHNQLE 325 (338)
T ss_pred cccEEEEECCCCCHHHHHHH----HCcCHHHHHHHhCCC
Confidence 33567999999999999999 999999999999764
No 43
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=87.28 E-value=1.4 Score=44.57 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=59.3
Q ss_pred hHHHHHHHhCCCcEEeEEeecC--------Cchh-hcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHH
Q 014108 156 AGWLLELRKGDALVLPRVVLEA--------FPKE-LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPE 226 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~--------~~~~-~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~ 226 (430)
.+.|.++|++|+.|+-.+-+.. |-.+ +..++...--++..+++.++.|||||--|. -| -++. .++
T Consensus 130 aDVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFIN-qE----T~G~-~~~ 203 (553)
T COG4724 130 ADVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFIN-QE----TTGD-VKP 203 (553)
T ss_pred hhhhhhhhcCCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEec-cc----ccCC-Ccc
Confidence 4578888988888875554321 2233 446677777899999999999999999998 22 2332 577
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014108 227 LRNMALEFIKQLGNALH 243 (430)
Q Consensus 227 d~~~~~~fl~eLr~~L~ 243 (430)
+.+++.+||..+++.-.
T Consensus 204 ~a~~M~~f~ly~ke~~~ 220 (553)
T COG4724 204 LAEKMRQFMLYSKEYAA 220 (553)
T ss_pred hHHHHHHHHHHHHhccc
Confidence 88888888888886544
No 44
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=87.05 E-value=8.7 Score=38.30 Aligned_cols=87 Identities=10% Similarity=0.152 Sum_probs=56.1
Q ss_pred ChHHHHHHHhCCCcEEeEEeecCCc--------------------------h---hhcCCHHHHHHHHHHHHHHHHhcCC
Q 014108 155 DAGWLLELRKGDALVLPRVVLEAFP--------------------------K---ELLRKKKLRDKAIDLILTECKEMEY 205 (430)
Q Consensus 155 d~~~l~~~~~~~~kv~p~v~~~~~~--------------------------~---~~l~~~~~R~~fi~~iv~~l~~~gf 205 (430)
+..-+..+|++|.+++--+++|.+. . .-+.+++-|+-+.+. ++.+.+.||
T Consensus 83 s~~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGf 161 (315)
T TIGR01370 83 SPEEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGF 161 (315)
T ss_pred CHHHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCC
Confidence 3455667777777887767766421 0 012356677777766 677888999
Q ss_pred CeEEeccccccccCCCC-----CCHHHHHHHHHHHHHHHHHhhcc
Q 014108 206 DGIVLESWSTWTAYGIL-----HDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 206 DGIdiD~W~~~~~~e~~-----~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
||+.+|. - .+|+.. ..+...+....|+++|.+.+|+.
T Consensus 162 DGvfLD~-l--Dsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 162 DGVYLDL-I--DAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred CeEeecc-c--hhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999982 1 112211 12455577899999998888863
No 45
>PRK06347 autolysin; Reviewed
Probab=86.08 E-value=0.74 Score=49.68 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.8
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCC
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~ 95 (430)
...|.|++|||+|+|+++ +++++++|++.|++..
T Consensus 547 ~~~Y~Vk~GDTL~sIA~K----ygvSv~~L~~~N~L~~ 580 (592)
T PRK06347 547 VKTYTVKKGDSLWAISRQ----YKTTVDNIKAWNKLTS 580 (592)
T ss_pred ceeeecCCCCcHHHHHHH----hCCCHHHHHHhcCCCc
Confidence 457999999999999999 9999999999997653
No 46
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]
Probab=85.92 E-value=0.81 Score=38.73 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=32.1
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCCC
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSE 96 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~~ 96 (430)
..+|.|++||||+.|+++ +++++.+|++.|...+.
T Consensus 66 ~~~~~V~~gdtL~~Ia~~----~~~tv~~l~~~n~l~~~ 100 (124)
T COG1388 66 VVTYTVKKGDTLSKIARK----YGVTVAELKQLNNLSSD 100 (124)
T ss_pred CceEEEecCCCHHHHHHH----hCCCHHHHHHHhccCCC
Confidence 467999999999999999 99999999999877765
No 47
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=84.64 E-value=9.5 Score=41.94 Aligned_cols=162 Identities=15% Similarity=0.218 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHHhc-CCCeEEeccccccccCCCCC---------------------CHHH--------HHHHHHH
Q 014108 185 KKKLRDKAIDLILTECKEM-EYDGIVLESWSTWTAYGILH---------------------DPEL--------RNMALEF 234 (430)
Q Consensus 185 ~~~~R~~fi~~iv~~l~~~-gfDGIdiD~W~~~~~~e~~~---------------------~~~d--------~~~~~~f 234 (430)
+++.| +.|.+|-+-+-.| .||||-+.==-.+..||... +|+. .+.+..|
T Consensus 439 ~~~~~-~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~~w~~~k~~~l~~f 517 (672)
T PRK14581 439 NPEVR-QRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQRWTRYKSKYLIDF 517 (672)
T ss_pred CHHHH-HHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHHHHHHHHHHHHHHH
Confidence 34444 4567777777776 79999984000011122210 1221 1345689
Q ss_pred HHHHHHHhhcccccccCCcceEEEEEECCC--CCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhhHH
Q 014108 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPP--HSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWIS 312 (430)
Q Consensus 235 l~eLr~~L~~~~~~~~~~~~~~lsvavpp~--~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~v~ 312 (430)
-.+|+++++... ...+...--+.+. .+. ....|| +.++..+.+.-|++.+|+|=|--. .+. ..+-.|..
T Consensus 518 ~~~l~~~v~~~~-----~p~~~tarniya~~~l~p-~~~~w~-aQ~l~~~~~~yD~~a~mamp~me~-~~~-~~~~~w~~ 588 (672)
T PRK14581 518 TNELTREVRDIR-----GPQVKSARNIFAMPILEP-ESEAWF-AQNLDDFLANYDWVAPMAMPLMEK-VPL-SESNEWLA 588 (672)
T ss_pred HHHHHHHHHhhc-----CccceehhcccccccCCh-hHHHHH-HhHHHHHHhhcchhHHhhchhhhc-ccc-ccHHHHHH
Confidence 999999987631 0122222222221 111 112355 578999999999999999976422 111 14578998
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeecccccccccCCCCcccCHHHHHHHHH
Q 014108 313 FTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEGGGAITGREYLNLLQ 363 (430)
Q Consensus 313 ~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~g~~~i~~~~~~~l~~ 363 (430)
+.++.+.+. -...+|+++-+.. ++|..++...+|+..+..+.++
T Consensus 589 ~l~~~v~~~-----~~~~~k~vfelQ~--~dw~~~~~~~~i~~~~l~~~m~ 632 (672)
T PRK14581 589 ELVNKVAQR-----PGALEKTVFELQS--KDWTQPEGNNAISGPILAGWMR 632 (672)
T ss_pred HHHHHHHhc-----CCcccceEEEeec--ccccCCCccCCCCHHHHHHHHH
Confidence 888888642 2357999998876 5687444455788877654443
No 48
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=83.62 E-value=1 Score=47.10 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=51.2
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCCCC--CCC------CCCCccEEEEEcCCC-------CCCcchh
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSEN--ASH------RYYTYPVLAYITPWN-------SKGYELA 122 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~~~--~~~------~~~~~~vlgY~~~w~-------~~~y~~~ 122 (430)
..+|.|++|||||+|+++ +++++++|.+.|...... +.+ ...+-.+-++++... ...|.++
T Consensus 27 a~tytVq~GDTLw~IA~~----ygvtv~~I~~~N~l~~~~I~~Gq~L~Ip~~~~~~~~~~~Vta~~LNVRsgps~s~~II 102 (481)
T PRK13914 27 ASTVVVEAGDTLWGIAQS----KGTTVDAIKKANNLTTDKIVPGQKLQVNEVAAAEKTEKSVSATWLNVRSGAGVDNSII 102 (481)
T ss_pred CceEEECCCCCHHHHHHH----HCCCHHHHHHHhCCCcccccCCCEEEeCCCCcccccceeEecceEEEecCCCCCccee
Confidence 467999999999999999 999999999998653211 111 111234445555432 1223332
Q ss_pred h--ccCCCCcEEE---EEEEEEeeC-C
Q 014108 123 K--MFNSKFTHLS---PVWYDLKSQ-G 143 (430)
Q Consensus 123 ~--~~~~klT~vs---p~w~~i~~~-g 143 (430)
. ..+.+++.+. --|++|+-+ |
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~G 129 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDG 129 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCC
Confidence 1 2345566653 349999974 5
No 49
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=82.32 E-value=1.4 Score=46.02 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.9
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCC
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~ 95 (430)
...|.|++|||||+|+++ +++++++|.+.|+...
T Consensus 199 a~tytVq~GDTL~sIAkr----YgVtv~eI~~~N~l~s 232 (481)
T PRK13914 199 ATTHAVKSGDTIWALSVK----YGVSVQDIMSWNNLSS 232 (481)
T ss_pred CeEEEECCCCCHHHHHHH----HCCCHHHHHHhcCCCc
Confidence 457999999999999999 9999999999997654
No 50
>PRK06347 autolysin; Reviewed
Probab=81.11 E-value=1.6 Score=47.27 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=30.1
Q ss_pred EEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCC
Q 014108 59 TKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (430)
Q Consensus 59 ~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~ 95 (430)
..|+|++|||||+|+.+ +++++++|.+.|+...
T Consensus 480 ~~YtVk~GDTL~sIAkk----ygVSv~~L~~~N~l~s 512 (592)
T PRK06347 480 KVYTVAKGDSLWRIANN----NKVTIANLKSWNNLKS 512 (592)
T ss_pred eeeeecCCCCHHHHHHH----HCCCHHHHHHhcCCCc
Confidence 46999999999999999 9999999999997653
No 51
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.75 E-value=5.2 Score=41.26 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCChHHHHHHHhCCCcEEeEEeecC--------------Cc-----------h-----hhcC---CHHHHHHHHHHHHHH
Q 014108 153 NADAGWLLELRKGDALVLPRVVLEA--------------FP-----------K-----ELLR---KKKLRDKAIDLILTE 199 (430)
Q Consensus 153 d~d~~~l~~~~~~~~kv~p~v~~~~--------------~~-----------~-----~~l~---~~~~R~~fi~~iv~~ 199 (430)
|.-...|.++|+.|++|.|-+..+. |. + .+.- -|+.|+-..+-+++.
T Consensus 115 DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~ev 194 (418)
T COG1649 115 DPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEV 194 (418)
T ss_pred ChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHH
Confidence 3335577888888888888765431 10 0 1222 367888888888899
Q ss_pred HHhcCCCeEEeccccc-c----c---------cCCC---C-CCHH-----HHHHHHHHHHHHHHHhhcccccccCCcceE
Q 014108 200 CKEMEYDGIVLESWST-W----T---------AYGI---L-HDPE-----LRNMALEFIKQLGNALHSVNSVRNRKQHLQ 256 (430)
Q Consensus 200 l~~~gfDGIdiD~W~~-~----~---------~~e~---~-~~~~-----d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~ 256 (430)
+++|..|||.+| --. + + .+|. . .++. -+++-+.||+++..++++. |.+..
T Consensus 195 V~~YdvDGIQfD-d~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKav------Kp~v~ 267 (418)
T COG1649 195 VRNYDVDGIQFD-DYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAV------KPNVK 267 (418)
T ss_pred HhCCCCCceecc-eeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh------CCCeE
Confidence 999999999998 110 0 0 0111 0 1122 3578889999999999985 35666
Q ss_pred EEEEE-CCCCCCCCCCCCCCccC---HHHHhccccEEEEecccC
Q 014108 257 LVYVI-GPPHSEKFQPHDFGPVD---LQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 257 lsvav-pp~~~~~~~~~~~~~~d---~~~l~~~vD~v~lMtYD~ 296 (430)
++++- ++..+.+. .+.+-.-| +.+ ..++|++..|+|=-
T Consensus 268 ~svsp~n~~~~~~f-~y~~~~qDw~~Wv~-~G~iD~l~pqvYr~ 309 (418)
T COG1649 268 FSVSPFNPLGSATF-AYDYFLQDWRRWVR-QGLIDELAPQVYRT 309 (418)
T ss_pred EEEccCCCCCccce-ehhhhhhhHHHHHH-cccHhhhhhhhhcc
Confidence 66554 22122111 11111122 223 34799999999954
No 52
>PRK14706 glycogen branching enzyme; Provisional
Probab=79.70 E-value=13 Score=40.69 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=57.4
Q ss_pred hHHHHHHHhCCCcEEeEEeecCC-----------------------------chh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAF-----------------------------PKE--LLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~-----------------------------~~~--~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+++++|+.|++|+.=++.+.. ... -+.+++.|+-+++++.-++++++
T Consensus 220 ~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 220 KYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred HHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 45777888889998866654421 000 13478999999999999999999
Q ss_pred CCeEEeccccccc--cC------CCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 205 YDGIVLESWSTWT--AY------GILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 205 fDGIdiD~W~~~~--~~------e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
+||+-+|.=..+. .+ +..........-..||++|++.+++.
T Consensus 300 iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 300 VDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred CCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 9999999311100 00 00000001122456999999999874
No 53
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=79.47 E-value=5.7 Score=38.94 Aligned_cols=94 Identities=18% Similarity=0.073 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCeEEecccccccc-CCCCC---------CHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEC
Q 014108 193 IDLILTECKEMEYDGIVLESWSTWTA-YGILH---------DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (430)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~W~~~~~-~e~~~---------~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavp 262 (430)
--+|.+.+.+.|||-|.+| .-.++. -+++. .-.-.+++..||.--|++|.. -+|+.|.
T Consensus 198 NvtIAKEa~~fGfdEiQFD-YIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~v-----------pIS~DIY 265 (400)
T COG1306 198 NVTIAKEAAKFGFDEIQFD-YIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEV-----------PISADIY 265 (400)
T ss_pred hHHHHHHHHHcCccceeee-EEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhccc-----------ceEEEee
Confidence 3467788889999999999 221111 01111 011235677888888888863 4778876
Q ss_pred CCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCC
Q 014108 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP 299 (430)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~ 299 (430)
..... .+...-.+.+++.|+.+||.+.-|-|--|.+
T Consensus 266 G~nGw-~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy~ 301 (400)
T COG1306 266 GQNGW-SSTDMALGQFWEALSSYVDVISPMFYPSHYG 301 (400)
T ss_pred cccCc-cCCcchhhhhHHHHHhhhhhccccccccccc
Confidence 53211 1111113689999999999999999987765
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.22 E-value=6 Score=34.22 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=42.4
Q ss_pred CChHHHHHHHhCCCcEEeEEeecCCc----------------h--------------hhcCCHHHHHHHHHHHHHHHHhc
Q 014108 154 ADAGWLLELRKGDALVLPRVVLEAFP----------------K--------------ELLRKKKLRDKAIDLILTECKEM 203 (430)
Q Consensus 154 ~d~~~l~~~~~~~~kv~p~v~~~~~~----------------~--------------~~l~~~~~R~~fi~~iv~~l~~~ 203 (430)
.-...++++|+.|++|+-+++++ |+ . .+--|..-++.++..|-+++++|
T Consensus 45 llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 34567777788899999888876 42 0 12234456788888888888999
Q ss_pred CCCeEEec
Q 014108 204 EYDGIVLE 211 (430)
Q Consensus 204 gfDGIdiD 211 (430)
++|||=+|
T Consensus 124 ~~DGiF~D 131 (132)
T PF14871_consen 124 DVDGIFFD 131 (132)
T ss_pred CCCEEEec
Confidence 99999998
No 55
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.73 E-value=6.5 Score=42.24 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=56.2
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc----------------------hh-hcCCH---HHHHHHHHHHHHHHHhcCCCeEE
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP----------------------KE-LLRKK---KLRDKAIDLILTECKEMEYDGIV 209 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~----------------------~~-~l~~~---~~R~~fi~~iv~~l~~~gfDGId 209 (430)
+.+++++|++|++|+.=++++... .. -..++ ..|+-+++++.-++++|++||+-
T Consensus 163 k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR 242 (542)
T TIGR02402 163 KALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLR 242 (542)
T ss_pred HHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 557788888999998766654211 00 12345 88999999999999999999999
Q ss_pred eccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 210 LESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 210 iD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
+|. -..+.. ..-..|++++++++++.
T Consensus 243 ~D~------~~~~~~----~~~~~~l~~~~~~~~~~ 268 (542)
T TIGR02402 243 LDA------VHAIAD----TSAKHILEELAREVHEL 268 (542)
T ss_pred EeC------HHHhcc----ccHHHHHHHHHHHHHHH
Confidence 993 111111 11246999999999875
No 56
>PRK12568 glycogen branching enzyme; Provisional
Probab=78.48 E-value=16 Score=40.55 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~-----------------------------~~--~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+++++|+.|++|+.=++.+..+ .. -..+++.|+-+++++.-++++++
T Consensus 322 k~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 322 AQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 457788888899988666543211 00 24568899999999999999999
Q ss_pred CCeEEeccccccc--cC-----CCCCCH-HHHH--HHHHHHHHHHHHhhcc
Q 014108 205 YDGIVLESWSTWT--AY-----GILHDP-ELRN--MALEFIKQLGNALHSV 245 (430)
Q Consensus 205 fDGIdiD~W~~~~--~~-----e~~~~~-~d~~--~~~~fl~eLr~~L~~~ 245 (430)
+||+-+|.=.... .+ +.+.+. ..++ .-..|+++|++.+++.
T Consensus 402 IDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 402 LDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred ceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999311000 00 000000 0111 2357999999999874
No 57
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=77.68 E-value=5.1 Score=43.06 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccccccc-CCC-CCCH-HHHHHHHHHHHHHHHHhhc
Q 014108 184 RKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTA-YGI-LHDP-ELRNMALEFIKQLGNALHS 244 (430)
Q Consensus 184 ~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~-~e~-~~~~-~d~~~~~~fl~eLr~~L~~ 244 (430)
.++.-|+-+++...+.++..||||+.||-+=.+.. +.. .... ..++.|..||++++++++.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~ 301 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD 301 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 45778999999999999999999999994211100 000 0122 3478899999999999964
No 58
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=77.33 E-value=15 Score=36.26 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=78.0
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcC-CCeEEeccccccccCCCCC--CHHHHHHHH
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEME-YDGIVLESWSTWTAYGILH--DPELRNMAL 232 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~g-fDGIdiD~W~~~~~~e~~~--~~~d~~~~~ 232 (430)
.+++..+++.+..++|.+.-...++-.+ +.+.-+.+.+.|++-+++.+ +|||-+++ -+... .-.|-+ .
T Consensus 48 ~g~~~~a~~~g~e~vp~~~a~A~P~G~v-~~~aye~l~~eil~~l~~agp~Dgv~L~L------HGAmv~e~~~D~E--G 118 (292)
T PF07364_consen 48 GGFLDAAEAQGWEVVPLLWAAAEPGGPV-TREAYERLRDEILDRLRAAGPLDGVLLDL------HGAMVAEGYDDGE--G 118 (292)
T ss_dssp HHHHHHHHHTT-EEEEEEEEEE-SEE-B--HHHHHHHHHHHHHHHHHS---SEEEEEE-------S---BSS-SSHH--H
T ss_pred HHHHHHHHHCCCEEEeeEeeeecCCCcc-cHHHHHHHHHHHHHHHHhcCCcCEEEEec------cCcEeecCCCCch--H
Confidence 5577777778889999887665553333 34566788899999999986 99999993 22111 112222 3
Q ss_pred HHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCCCCCChhh-H
Q 014108 233 EFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKW-I 311 (430)
Q Consensus 233 ~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~~-v 311 (430)
.||+++|+.+.+ +..+.+++-+.. .--+.+.+.+|.++-. - .-|+....- =
T Consensus 119 ~Ll~rvR~~vGp---------~vpI~~tlDlHa-----------Nvs~~mv~~ad~~~~y--r------tyPH~D~~etg 170 (292)
T PF07364_consen 119 DLLRRVRAIVGP---------DVPIAATLDLHA-----------NVSPRMVEAADIIVGY--R------TYPHIDMYETG 170 (292)
T ss_dssp HHHHHHHHHHTT---------TSEEEEEE-TT---------------HHHHHH-SEEEE-----------SS---HHHHH
T ss_pred HHHHHHHHHhCC---------CCeEEEEeCCCC-----------CccHHHHHhCCEEEEc--C------CCCccCHHHHH
Confidence 599999999985 455555554321 1225888899987652 2 223333321 1
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEeeccccc
Q 014108 312 SFTLQLLLGSPGIGTRSLARKIFLGINFYGN 342 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~~ip~~KivlGipfYG~ 342 (430)
+.+.+.+..... .++.|.+-+.-+|+-..
T Consensus 171 ~~aa~ll~~~l~--g~~rp~~a~~~~P~l~~ 199 (292)
T PF07364_consen 171 ERAARLLLRALR--GEIRPVMALRRLPMLLP 199 (292)
T ss_dssp HHHHHHHHHTTT---SS--EEEEEEE-B--B
T ss_pred HHHHHHHHHHHc--CCCCceEEEecCCeEcc
Confidence 223333332211 45677788888887654
No 59
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=77.16 E-value=19 Score=39.32 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=43.2
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc----------h-----------------h----hcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP----------K-----------------E----LLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~----------~-----------------~----~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+++++|+.|++|+.=++.+... . . -..+++.|+-+++++.-++++|+
T Consensus 209 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 209 MYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred HHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 457788888899988666543110 0 0 12568999999999999999999
Q ss_pred CCeEEecc
Q 014108 205 YDGIVLES 212 (430)
Q Consensus 205 fDGIdiD~ 212 (430)
+||+-+|.
T Consensus 289 iDG~R~D~ 296 (613)
T TIGR01515 289 IDGLRVDA 296 (613)
T ss_pred CcEEEEcC
Confidence 99999994
No 60
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=77.08 E-value=18 Score=39.37 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=53.8
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc-------------------------------hh-hcCCHHHHHHHHHHHHHHHHhc
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP-------------------------------KE-LLRKKKLRDKAIDLILTECKEM 203 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~-------------------------------~~-~l~~~~~R~~fi~~iv~~l~~~ 203 (430)
+.+++++|+.|++|+.=++++... .. -..++..|+-+++++.-+++++
T Consensus 232 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~ 311 (605)
T TIGR02104 232 KQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEY 311 (605)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 457777888899998766653210 00 1236889999999999999999
Q ss_pred CCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 204 EYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 204 gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
++||+-+|. -..+ + ..|++++++++++.
T Consensus 312 ~iDGfR~D~------~~~~----~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 312 NIDGFRFDL------MGIH----D----IETMNEIRKALNKI 339 (605)
T ss_pred CCCEEEEec------hhcC----C----HHHHHHHHHHHHhh
Confidence 999999993 1111 1 23788888888764
No 61
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=76.31 E-value=2.7 Score=37.07 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=26.4
Q ss_pred eeEEeeccCCCchhHHHHhCcccCC---CCHHHHHHHcC
Q 014108 57 YCTKYSTRANRSATHMHQRGLVKTD---VNYQEILTENS 92 (430)
Q Consensus 57 ~~~~~~~~~gdt~~~i~~~~lv~~~---~~~~~il~~~~ 92 (430)
....|++++|||+|+|+++ +. ..+..|++.|.
T Consensus 94 ~~~~y~Vk~GDTL~~IA~~----~~g~~~~~~~I~~~N~ 128 (147)
T PRK11198 94 ESQFYTVKSGDTLSAIAKK----VYGNANKYNKIFEANK 128 (147)
T ss_pred CCeEEEECCCCCHHHHHHH----HcCChhhHHHHHHhhh
Confidence 3567999999999999999 53 45788988886
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=76.08 E-value=22 Score=39.73 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=57.2
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc-----------------------------h--hhcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------K--ELLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~-----------------------------~--~~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+++++|+.|++|+.=++.+... . --..+++.|+-+++++.-++++++
T Consensus 318 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 318 RYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 457788888999998665543210 0 023568999999999999999999
Q ss_pred CCeEEeccccccc--cC--------CCC-CCHHHHHHHHHHHHHHHHHhhcc
Q 014108 205 YDGIVLESWSTWT--AY--------GIL-HDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 205 fDGIdiD~W~~~~--~~--------e~~-~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
+||+-+|.=.... .+ +.. ...++ ..-..|++++++.+++.
T Consensus 398 iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 398 IDGLRVDAVASMLYLDYSRKEGEWIPNIYGGREN-LEAIDFLRELNAVVHEE 448 (726)
T ss_pred CcEEEECCHHHhhhccccccccccccccccCcCC-HHHHHHHHHHHHHHHHH
Confidence 9999999311000 00 000 00011 12357999999999864
No 63
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.34 E-value=22 Score=38.99 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=56.4
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~-----------------------------~~--~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+++++|+.|++|+.=++.+... .. -..+++.|+-+++++.-++++|+
T Consensus 223 k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 223 MYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 457788888899998666553210 00 12368999999999999999999
Q ss_pred CCeEEeccccccc--c------CCC--CCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 205 YDGIVLESWSTWT--A------YGI--LHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 205 fDGIdiD~W~~~~--~------~e~--~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
+||+-+|.=.... . |.. ....++. .-..|++++++.+++.
T Consensus 303 iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 303 LDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLE 352 (633)
T ss_pred CcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHH
Confidence 9999999311000 0 000 0000011 1257999999999864
No 64
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.35 E-value=52 Score=33.20 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecc---------cccc-----ccCCCCCCHHHHHH-HHHHHHHHHHHhhcccccccCC
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLES---------WSTW-----TAYGILHDPELRNM-ALEFIKQLGNALHSVNSVRNRK 252 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD~---------W~~~-----~~~e~~~~~~d~~~-~~~fl~eLr~~L~~~~~~~~~~ 252 (430)
..+.|++.. ..+++-|||||+|.. +++. ..|++ +.+.|-. ..+.++++|+++... -.
T Consensus 142 ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGG--slenR~r~~~eii~~vr~~vg~~-----~~ 213 (353)
T cd04735 142 IIDAFGEAT-RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGG--SLENRMRFPLAVVKAVQEVIDKH-----AD 213 (353)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCC--cHHHHHHHHHHHHHHHHHHhccc-----cC
Confidence 455666654 345678999999972 2221 11222 2344443 336777777777510 00
Q ss_pred cceEEEEEECCCCCCCCCCCCCCccCH----HHHhcc-ccEEEEecccCCC
Q 014108 253 QHLQLVYVIGPPHSEKFQPHDFGPVDL----QSLSDA-VDGFSLMTYDFSG 298 (430)
Q Consensus 253 ~~~~lsvavpp~~~~~~~~~~~~~~d~----~~l~~~-vD~v~lMtYD~~~ 298 (430)
.++.+.+-+.+.... .+ .....|. +.|.+. +|++.|....++.
T Consensus 214 ~~~~v~~R~s~~~~~--~~-g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~ 261 (353)
T cd04735 214 KDFILGYRFSPEEPE--EP-GIRMEDTLALVDKLADKGLDYLHISLWDFDR 261 (353)
T ss_pred CCceEEEEECccccc--CC-CCCHHHHHHHHHHHHHcCCCEEEeccCcccc
Confidence 256677777653211 00 0111222 233333 8999997755443
No 65
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=71.06 E-value=4.3 Score=42.59 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.7
Q ss_pred eEEeeccCCCchhHHHHhCcccCCCCHHHHHHHcCCCC
Q 014108 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (430)
Q Consensus 58 ~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~~~~~ 95 (430)
..+|.|++|||+++|+++ ++++.++|.+.|+...
T Consensus 343 ~~~y~Vk~GDTL~sIA~r----~gvs~~~L~~~N~l~~ 376 (456)
T PRK10783 343 SRSYKVRSGDTLSGIASR----LNVSTKDLQQWNNLRG 376 (456)
T ss_pred ceEEEECCCCcHHHHHHH----HCcCHHHHHHHcCCCc
Confidence 457999999999999999 9999999999987654
No 66
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=67.40 E-value=7.2 Score=37.51 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred EEEEecccCCCC----CCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCcEEE
Q 014108 288 GFSLMTYDFSGP----HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFL 335 (430)
Q Consensus 288 ~v~lMtYD~~~~----~~pgp~APl~~v~~~v~~~~~~~~~~~~ip~~Kivl 335 (430)
.+++|+|||+|- |.|.-.-...-++.+.+++... .| +.++|+|
T Consensus 88 n~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~----~g-~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNR----YG-SPERIIL 134 (258)
T ss_pred cceEEEEecccccccCCCcccccchhhHHHHHHHHHhh----cC-CCceEEE
Confidence 689999999986 3444444445577777888753 34 6666664
No 67
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.70 E-value=23 Score=33.42 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=50.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEE
Q 014108 181 ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYV 260 (430)
Q Consensus 181 ~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsva 260 (430)
.+..+...++.+.+-++++.+....|=+-||.-+... .-++.++-.+|+..+|.-.. .++.+.++
T Consensus 100 ~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~------~~~~~~~vl~fm~~~r~l~d---------~gKvIilT 164 (235)
T COG2874 100 PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA------TYDSEDAVLNFMTFLRKLSD---------LGKVIILT 164 (235)
T ss_pred ccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHh------hcccHHHHHHHHHHHHHHHh---------CCCEEEEE
Confidence 3556778889999999999999999999999532211 12234556677777776554 37788889
Q ss_pred ECCC
Q 014108 261 IGPP 264 (430)
Q Consensus 261 vpp~ 264 (430)
++|.
T Consensus 165 vhp~ 168 (235)
T COG2874 165 VHPS 168 (235)
T ss_pred eChh
Confidence 9885
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=64.12 E-value=41 Score=39.71 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=57.6
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~-----------------------------~~--~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+++++|+.|++|+.=++.+..+ .. -..+++.|+-+++++.-++++|+
T Consensus 818 k~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 818 RFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 457788888899988655544211 00 13568899999999999999999
Q ss_pred CCeEEeccccccc--cC--------CCCC-CHHHHHHHHHHHHHHHHHhhcc
Q 014108 205 YDGIVLESWSTWT--AY--------GILH-DPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 205 fDGIdiD~W~~~~--~~--------e~~~-~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
+||+-+|.=..+. .| ++.. ..++ ..-..|+++|.+.+++.
T Consensus 898 iDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en-~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 898 IDGLRVDAVASMLYLDYSREEGQWRPNRFGGREN-LEAISFLQEVNATVYKT 948 (1224)
T ss_pred CCcEEEeehhhhhhcccccccccccccccCCccC-hHHHHHHHHHHHHHHHH
Confidence 9999999421100 00 0000 0111 12367999999999864
No 69
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=61.50 E-value=86 Score=27.10 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=42.4
Q ss_pred CChHHHHHHHhCCCcEEeEEeecCCch-hhcCCHHHHHHHHHHHHHHHHhcCCCe-EEe--ccccccccCCCCCCHHHHH
Q 014108 154 ADAGWLLELRKGDALVLPRVVLEAFPK-ELLRKKKLRDKAIDLILTECKEMEYDG-IVL--ESWSTWTAYGILHDPELRN 229 (430)
Q Consensus 154 ~d~~~l~~~~~~~~kv~p~v~~~~~~~-~~l~~~~~R~~fi~~iv~~l~~~gfDG-Idi--D~W~~~~~~e~~~~~~d~~ 229 (430)
+..++++.+++.|.+|+|....++... ........=.+-++..+..++..||.- ..| |+ + |.. .+.+-..
T Consensus 39 Lt~~e~~~i~~~Gl~i~pIyq~~~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p~gt~IYfav-D----~d~-~~~~~~~ 112 (136)
T PF08924_consen 39 LTAGEVQDIRAAGLRIFPIYQGGGRETSDFTYGYAQGVADARDAVAAARALGFPAGTPIYFAV-D----YDA-TDAECDS 112 (136)
T ss_dssp --HHHHHHHHHTT-EEEEEE--------S-B--HHHHHHHHHHHHHHHHHTT--SS-EEEEE-------TS--B-HH---
T ss_pred CCHHHHHHHHHCCCEEEEEEecccccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe-e----cCC-Cchhhhh
Confidence 467899999999999999664433221 222222344456678888999999854 333 21 0 222 1334355
Q ss_pred HHHHHHHHHHHHhhc
Q 014108 230 MALEFIKQLGNALHS 244 (430)
Q Consensus 230 ~~~~fl~eLr~~L~~ 244 (430)
.-+.+++-+.++|+.
T Consensus 113 ~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 113 AILPYFRGWNSALGA 127 (136)
T ss_dssp ----HHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 677899999999997
No 70
>PRK03705 glycogen debranching enzyme; Provisional
Probab=61.38 E-value=29 Score=38.23 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=43.1
Q ss_pred hHHHHHHHhCCCcEEeEEeecCC--------------------------------c---hh-hcCCHHHHHHHHHHHHHH
Q 014108 156 AGWLLELRKGDALVLPRVVLEAF--------------------------------P---KE-LLRKKKLRDKAIDLILTE 199 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~--------------------------------~---~~-~l~~~~~R~~fi~~iv~~ 199 (430)
+.+++++|+.|++|+.=++++.- + .. -..++..|+-+++++.-+
T Consensus 245 k~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W 324 (658)
T PRK03705 245 RDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYW 324 (658)
T ss_pred HHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHH
Confidence 45777888889999876665310 0 00 124688999999999999
Q ss_pred HHhcCCCeEEecc
Q 014108 200 CKEMEYDGIVLES 212 (430)
Q Consensus 200 l~~~gfDGIdiD~ 212 (430)
++++|+||.-+|.
T Consensus 325 ~~e~gVDGFRfD~ 337 (658)
T PRK03705 325 VETCHVDGFRFDL 337 (658)
T ss_pred HHHhCCCEEEEEc
Confidence 9999999999993
No 71
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=60.05 E-value=1e+02 Score=31.27 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++.. ..+++-|||||.|.
T Consensus 157 ii~~f~~AA-~rA~~AGfDGVEIh 179 (362)
T PRK10605 157 IVNDFRQAI-ANAREAGFDLVELH 179 (362)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEc
Confidence 455666643 56677899999996
No 72
>PLN02960 alpha-amylase
Probab=58.63 E-value=58 Score=36.98 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=57.7
Q ss_pred hHHHHHHHhCCCcEEeEEeecC------------------------------Cchh--hcCCHHHHHHHHHHHHHHHHhc
Q 014108 156 AGWLLELRKGDALVLPRVVLEA------------------------------FPKE--LLRKKKLRDKAIDLILTECKEM 203 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~------------------------------~~~~--~l~~~~~R~~fi~~iv~~l~~~ 203 (430)
+.++.++|+.|++|+.=++.+. |... -+.+++.|+-+++++.-++++|
T Consensus 469 k~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 469 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred HHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5577888888898886554321 1111 2457899999999999999999
Q ss_pred CCCeEEeccccccc--------------cCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 204 EYDGIVLESWSTWT--------------AYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 204 gfDGIdiD~W~~~~--------------~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
++||+-+|.=..+. .+.+ ...+. .-..||++|.+.+++.
T Consensus 549 hIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n--~~~d~-~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 549 RVDGFQFHSLGSMLYTHNGFASFTGDLDEYCN--QYVDR-DALIYLILANEMLHQL 601 (897)
T ss_pred CCCceeecccceeeeeccCccccCCcccccCC--ccCCc-hHHHHHHHHHHHHHhh
Confidence 99999999322100 0011 01222 3567999999998863
No 73
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.42 E-value=1.1e+02 Score=29.42 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=42.2
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.+++.|.||+-|- .+ ..++ ..++.+.+++ .++.+...+.|.++ .
T Consensus 108 ~~~~~~aGvdgviip-------Dl---p~ee-------~~~~~~~~~~--------~gl~~i~lv~P~T~---------~ 153 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA-------DL---PLEE-------SGDLVEAAKK--------HGVKPIFLVAPNAD---------D 153 (256)
T ss_pred HHHHHHcCCCEEEEC-------CC---ChHH-------HHHHHHHHHH--------CCCcEEEEECCCCC---------H
Confidence 445778899998885 22 1222 2344455554 46777788888643 2
Q ss_pred cCHHHHhcccc-EEEEecc
Q 014108 277 VDLQSLSDAVD-GFSLMTY 294 (430)
Q Consensus 277 ~d~~~l~~~vD-~v~lMtY 294 (430)
..+..+.+.+| |+.+||-
T Consensus 154 eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 154 ERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred HHHHHHHHhCCCCEEEEEC
Confidence 45678888898 9999985
No 74
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=54.52 E-value=2 Score=35.54 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=40.8
Q ss_pred ccccccceeEEeeehhhhhhheeeeeeEEeeccCCCchhHHHHhCcccCCCCHHHHHHHc
Q 014108 32 SASDRKLITIFVIFFIVIPTVSVLLYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTEN 91 (430)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~~ 91 (430)
+..|++-+.|+.+++++|.++..+.+-+..-+|.|..+..|..| |..++-.++++-+-|
T Consensus 55 sg~g~~~lffvglii~LivSLaLVsFvIFLiiQTgnkMddvSrR-L~aEgKdIdeLKKiN 113 (128)
T PF15145_consen 55 SGNGSRSLFFVGLIIVLIVSLALVSFVIFLIIQTGNKMDDVSRR-LTAEGKDIDELKKIN 113 (128)
T ss_pred CCCCceeehHHHHHHHHHHHHHHHHHHHHheeeccchHHHHHHH-HHhccCCHHHHHHHH
Confidence 34455555555555555555554444556778999999999988 888888888887766
No 75
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=54.39 E-value=47 Score=31.50 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcce--EE
Q 014108 180 KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL--QL 257 (430)
Q Consensus 180 ~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~--~l 257 (430)
|-|+.+|. ++++. +.+.|.|-|-+. +|.. .....+++.+|+. +. ..
T Consensus 74 HLMv~~P~---~~i~~----~~~aGad~It~H-------~Ea~------~~~~~~l~~Ik~~------------g~~~ka 121 (228)
T PRK08091 74 HLMVRDQF---EVAKA----CVAAGADIVTLQ-------VEQT------HDLALTIEWLAKQ------------KTTVLI 121 (228)
T ss_pred EeccCCHH---HHHHH----HHHhCCCEEEEc-------ccCc------ccHHHHHHHHHHC------------CCCceE
Confidence 34566664 35444 445699999998 5642 1233455555542 44 67
Q ss_pred EEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 258 VYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 258 svavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
-+++-|.++ -..+..+.+.+|.+.+||-+=
T Consensus 122 GlalnP~Tp---------~~~i~~~l~~vD~VLiMtV~P 151 (228)
T PRK08091 122 GLCLCPETP---------ISLLEPYLDQIDLIQILTLDP 151 (228)
T ss_pred EEEECCCCC---------HHHHHHHHhhcCEEEEEEECC
Confidence 889988653 246678888999999999863
No 76
>PRK08005 epimerase; Validated
Probab=54.01 E-value=44 Score=31.31 Aligned_cols=93 Identities=8% Similarity=0.054 Sum_probs=57.1
Q ss_pred ChHHHHHHHh-CCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHH
Q 014108 155 DAGWLLELRK-GDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALE 233 (430)
Q Consensus 155 d~~~l~~~~~-~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~ 233 (430)
....++.+|+ ....+= + |-|+.+|+. +++. +.+.|.|-|-+. +|.. .....
T Consensus 46 G~~~i~~l~~~t~~~~D--v------HLMv~~P~~---~i~~----~~~~gad~It~H-------~Ea~------~~~~~ 97 (210)
T PRK08005 46 GMKTIQAVAQQTRHPLS--F------HLMVSSPQR---WLPW----LAAIRPGWIFIH-------AESV------QNPSE 97 (210)
T ss_pred CHHHHHHHHhcCCCCeE--E------EeccCCHHH---HHHH----HHHhCCCEEEEc-------ccCc------cCHHH
Confidence 3567777766 211110 1 346667643 5444 445699999998 5532 11233
Q ss_pred HHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 234 FIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 234 fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
+++.+|+ .|...-+|+-|.++ -..+..+.+.+|.+.+||-+-
T Consensus 98 ~l~~Ik~------------~G~k~GlAlnP~Tp---------~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 98 ILADIRA------------IGAKAGLALNPATP---------LLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred HHHHHHH------------cCCcEEEEECCCCC---------HHHHHHHHHhcCEEEEEEecC
Confidence 5555554 35667889988653 245667788999999999863
No 77
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.43 E-value=2.1e+02 Score=29.03 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++.. ..+++-|||||+|.
T Consensus 142 ii~~f~~AA-~~a~~aGfDgVeih 164 (361)
T cd04747 142 VIAAFARAA-ADARRLGFDGIELH 164 (361)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEe
Confidence 345566543 45567799999997
No 78
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=53.23 E-value=26 Score=26.23 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=25.5
Q ss_pred CceEeecCCCceeEEEEcCCCceEEEEeCC-----HHHHHHHHHHHH
Q 014108 367 PALQWEKNSGEHFFFFSDENQVKHAVFYPS-----LISISMRLEEAK 408 (430)
Q Consensus 367 ~~~~wD~~s~~~y~~y~d~~g~~~~V~ydd-----~~Si~~K~~~a~ 408 (430)
.++...+... .+.|.+++|.......++ +..++.|+.|++
T Consensus 24 tkivl~~~~~--~v~yi~~~~~~~~~~~~~~~~~~p~~l~~kl~~~k 68 (68)
T PF00659_consen 24 TKIVLSPDGR--LVTYIDRDGERQTYSLSSLLEDFPEDLKKKLTYLK 68 (68)
T ss_dssp -EEEEETTCC--EEEEE-TTS-EEEEECTCHHHH--HHHHHHHHHHH
T ss_pred CEEEECCCCC--EEEEECCCCcEEEEEccccccCCCHHHHHHhhccC
Confidence 3444444433 556777778777777787 899999999986
No 79
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=53.09 E-value=30 Score=32.13 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred ChHHHHHHHhC-CCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHH
Q 014108 155 DAGWLLELRKG-DALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALE 233 (430)
Q Consensus 155 d~~~l~~~~~~-~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~ 233 (430)
....++.+++. ++.+= + |-|..+|. ++++. +.+.|.|-|.+. +|.. + ....
T Consensus 45 g~~~i~~i~~~~~~~~D--v------HLMv~~P~---~~i~~----~~~~g~~~i~~H-------~E~~---~---~~~~ 96 (201)
T PF00834_consen 45 GPDIIKAIRKITDLPLD--V------HLMVENPE---RYIEE----FAEAGADYITFH-------AEAT---E---DPKE 96 (201)
T ss_dssp -HHHHHHHHTTSSSEEE--E------EEESSSGG---GHHHH----HHHHT-SEEEEE-------GGGT---T---THHH
T ss_pred CHHHHHHHhhcCCCcEE--E------EeeeccHH---HHHHH----HHhcCCCEEEEc-------ccch---h---CHHH
Confidence 46788888772 22211 1 22455653 34444 556699999998 3421 1 1234
Q ss_pred HHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 234 FIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 234 fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
+++.+|+ .+....+++-|.++ -..+..+.+.+|.+.+||-+-
T Consensus 97 ~i~~ik~------------~g~k~GialnP~T~---------~~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 97 TIKYIKE------------AGIKAGIALNPETP---------VEELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp HHHHHHH------------TTSEEEEEE-TTS----------GGGGTTTGCCSSEEEEESS-T
T ss_pred HHHHHHH------------hCCCEEEEEECCCC---------chHHHHHhhhcCEEEEEEecC
Confidence 5666655 25678889988653 244667788999999999763
No 80
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=51.88 E-value=54 Score=31.20 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCeEEe-ccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCC
Q 014108 196 ILTECKEMEYDGIVL-ESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDF 274 (430)
Q Consensus 196 iv~~l~~~gfDGIdi-D~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~ 274 (430)
.++.+++.|.||+.+ | . .++ -+.++.+.+++ .++...+.++|.++
T Consensus 96 fi~~~~~aG~~giiipD--------l---~~e-------e~~~~~~~~~~--------~g~~~i~~i~P~T~-------- 141 (242)
T cd04724 96 FLRDAKEAGVDGLIIPD--------L---PPE-------EAEEFREAAKE--------YGLDLIFLVAPTTP-------- 141 (242)
T ss_pred HHHHHHHCCCcEEEECC--------C---CHH-------HHHHHHHHHHH--------cCCcEEEEeCCCCC--------
Confidence 344577789999999 4 1 222 23444555554 46778888888653
Q ss_pred CccCHHHHhc-cccEEEEeccc
Q 014108 275 GPVDLQSLSD-AVDGFSLMTYD 295 (430)
Q Consensus 275 ~~~d~~~l~~-~vD~v~lMtYD 295 (430)
...++.+.+ ..|++.+||..
T Consensus 142 -~~~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 142 -DERIKKIAELASGFIYYVSRT 162 (242)
T ss_pred -HHHHHHHHhhCCCCEEEEeCC
Confidence 234667777 78999999963
No 81
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=50.60 E-value=26 Score=25.51 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCCeE-Eecccc
Q 014108 194 DLILTECKEMEYDGI-VLESWS 214 (430)
Q Consensus 194 ~~iv~~l~~~gfDGI-diD~W~ 214 (430)
+.+++.+++.||||. .|+ ||
T Consensus 3 ~~i~~~L~~~GYdG~~siE-~E 23 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIE-HE 23 (55)
T ss_dssp HHHHHHHHHTT--SEEEE----
T ss_pred HHHHHHHHHcCCCceEEEE-ee
Confidence 457888999999995 566 54
No 82
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=49.42 E-value=94 Score=28.27 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.+.+.|.|||.+. .+. ++ ....+++.+++. +..+.+.+.+.+. .
T Consensus 72 ~~~~~~~gadgv~vh-------~~~---~~---~~~~~~~~~~~~------------g~~~~~~~~~~t~---------~ 117 (210)
T TIGR01163 72 IEDFAEAGADIITVH-------PEA---SE---HIHRLLQLIKDL------------GAKAGIVLNPATP---------L 117 (210)
T ss_pred HHHHHHcCCCEEEEc-------cCC---ch---hHHHHHHHHHHc------------CCcEEEEECCCCC---------H
Confidence 666778999999887 221 11 223344444332 2233444544321 2
Q ss_pred cCHHHHhccccEEEEecccC
Q 014108 277 VDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 277 ~d~~~l~~~vD~v~lMtYD~ 296 (430)
..+.++...+|++.+|+.+-
T Consensus 118 e~~~~~~~~~d~i~~~~~~~ 137 (210)
T TIGR01163 118 EFLEYVLPDVDLVLLMSVNP 137 (210)
T ss_pred HHHHHHHhhCCEEEEEEEcC
Confidence 34667777789999999764
No 83
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=48.89 E-value=36 Score=38.88 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 184 RKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 184 ~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
.++..|+-+++++.-++++|++||+-+|. ...+ + ..|++++++++++.
T Consensus 469 e~~~Vrk~iiDsl~~W~~ey~VDGFRfDl------m~~~----~----~~f~~~~~~~l~~i 516 (898)
T TIGR02103 469 EHRMMAKLIVDSLVVWAKDYKVDGFRFDL------MGHH----P----KAQMLAAREAIKAL 516 (898)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEec------hhhC----C----HHHHHHHHHHHHHh
Confidence 35788999999999999999999999994 2221 2 23778888887764
No 84
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.88 E-value=95 Score=31.23 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeccc---------cc-c----ccCCCCCCHHHH-HHHHHHHHHHHHHhhcccccccC
Q 014108 187 KLRDKAIDLILTECKEMEYDGIVLESW---------ST-W----TAYGILHDPELR-NMALEFIKQLGNALHSVNSVRNR 251 (430)
Q Consensus 187 ~~R~~fi~~iv~~l~~~gfDGIdiD~W---------~~-~----~~~e~~~~~~d~-~~~~~fl~eLr~~L~~~~~~~~~ 251 (430)
+..+.|++... .+++-|||||+|..= ++ . ..|++ +.+.| .-..+.++.+|++...
T Consensus 138 ~ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG--slenR~r~~~eiv~~ir~~vg~------- 207 (343)
T cd04734 138 EIIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG--SLENRMRFLLEVLAAVRAAVGP------- 207 (343)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC--CHHHHhHHHHHHHHHHHHHcCC-------
Confidence 34556665543 456689999999831 10 0 11221 23333 4445677777776643
Q ss_pred CcceEEEEEECCCCCCCCCCCCC-CccCH-HHHhcc--ccEEEEecc
Q 014108 252 KQHLQLVYVIGPPHSEKFQPHDF-GPVDL-QSLSDA--VDGFSLMTY 294 (430)
Q Consensus 252 ~~~~~lsvavpp~~~~~~~~~~~-~~~d~-~~l~~~--vD~v~lMtY 294 (430)
.+.+.+-+.+..... .+... +..++ +.|.+. +|++.|-.-
T Consensus 208 --~~~v~iRl~~~~~~~-~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 208 --DFIVGIRISGDEDTE-GGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred --CCeEEEEeehhhccC-CCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 566666666532110 00000 11122 344443 799998543
No 85
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=47.51 E-value=59 Score=30.59 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=59.2
Q ss_pred ChHHHHHHHhC--CCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHH
Q 014108 155 DAGWLLELRKG--DALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMAL 232 (430)
Q Consensus 155 d~~~l~~~~~~--~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~ 232 (430)
.+..++.+|+. +..+= + |-|+.+|+ ++++. +.+.|.|=|.+. +|.. ....
T Consensus 45 g~~~i~~i~~~~~~~~~d--v------HLMv~~p~---~~i~~----~~~~gad~i~~H-------~Ea~------~~~~ 96 (220)
T PRK08883 45 GAPICKALRDYGITAPID--V------HLMVKPVD---RIIPD----FAKAGASMITFH-------VEAS------EHVD 96 (220)
T ss_pred CHHHHHHHHHhCCCCCEE--E------EeccCCHH---HHHHH----HHHhCCCEEEEc-------ccCc------ccHH
Confidence 46678888762 22111 1 33566663 35544 444699999998 5642 1233
Q ss_pred HHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCC
Q 014108 233 EFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFS 297 (430)
Q Consensus 233 ~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~ 297 (430)
.+++.+|+ .|....+++.|.++ ...+..+.+.+|.|.+||-+-.
T Consensus 97 ~~l~~ik~------------~g~k~GlalnP~Tp---------~~~i~~~l~~~D~vlvMtV~PG 140 (220)
T PRK08883 97 RTLQLIKE------------HGCQAGVVLNPATP---------LHHLEYIMDKVDLILLMSVNPG 140 (220)
T ss_pred HHHHHHHH------------cCCcEEEEeCCCCC---------HHHHHHHHHhCCeEEEEEecCC
Confidence 45555554 25667889988653 2567788899999999998743
No 86
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=47.42 E-value=67 Score=31.12 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.|++-|.||+-|- -. .+++ ..++.+.+++ .++.+...++|.++ .
T Consensus 112 ~~~~~~aGvdgviip-------DL---P~ee-------~~~~~~~~~~--------~gi~~I~lv~PtT~---------~ 157 (263)
T CHL00200 112 IKKISQAGVKGLIIP-------DL---PYEE-------SDYLISVCNL--------YNIELILLIAPTSS---------K 157 (263)
T ss_pred HHHHHHcCCeEEEec-------CC---CHHH-------HHHHHHHHHH--------cCCCEEEEECCCCC---------H
Confidence 344788899999984 11 2233 2344444544 47778888888653 2
Q ss_pred cCHHHHhcccc-EEEEecccCCCCCCCCCCCCh-hhHHHHHHHHhcCCCCCCCCCCCcEEEee
Q 014108 277 VDLQSLSDAVD-GFSLMTYDFSGPHNPGPNAPL-KWISFTLQLLLGSPGIGTRSLARKIFLGI 337 (430)
Q Consensus 277 ~d~~~l~~~vD-~v~lMtYD~~~~~~pgp~APl-~~v~~~v~~~~~~~~~~~~ip~~KivlGi 337 (430)
..+..+++.++ |+.+|+. ++.+|....+ .-+++.++.+-+ .-...|.+|.
T Consensus 158 eri~~i~~~a~gFIY~vS~----~GvTG~~~~~~~~~~~~i~~ir~-------~t~~Pi~vGF 209 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVST----TGVTGLKTELDKKLKKLIETIKK-------MTNKPIILGF 209 (263)
T ss_pred HHHHHHHHhCCCcEEEEcC----CCCCCCCccccHHHHHHHHHHHH-------hcCCCEEEEC
Confidence 56789999998 8888882 2334443222 235555555542 1234566664
No 87
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=47.22 E-value=62 Score=29.94 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=50.6
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEE
Q 014108 180 KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVY 259 (430)
Q Consensus 180 ~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsv 259 (430)
+-|+.+|+. .|. -+.+-|.+.+.+. +|.... ..+|-+.+++ .+..+-+
T Consensus 70 HmMV~~Peq---~V~----~~a~agas~~tfH-------~E~~q~----------~~~lv~~ir~--------~Gmk~G~ 117 (224)
T KOG3111|consen 70 HMMVENPEQ---WVD----QMAKAGASLFTFH-------YEATQK----------PAELVEKIRE--------KGMKVGL 117 (224)
T ss_pred EEeecCHHH---HHH----HHHhcCcceEEEE-------EeeccC----------HHHHHHHHHH--------cCCeeeE
Confidence 456777753 232 3444589999998 564311 2344444444 4788999
Q ss_pred EECCCCCCCCCCCCCCccCHHHHhccccEEEEeccc
Q 014108 260 VIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (430)
Q Consensus 260 avpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (430)
++-|.++ -.++..+++.+|.+.+||-.
T Consensus 118 alkPgT~---------Ve~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 118 ALKPGTP---------VEDLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred EeCCCCc---------HHHHHHhhccccEEEEEEec
Confidence 9998764 35777888899999999986
No 88
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=46.57 E-value=1.3e+02 Score=27.31 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=37.5
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.+.+.|.||+-+- .+. . +....+++.++. .+..+.+.+.+.+. .
T Consensus 73 ~~~~~~~g~dgv~vh-------~~~--~----~~~~~~~~~~~~------------~~~~~g~~~~~~~~---------~ 118 (211)
T cd00429 73 IEAFAKAGADIITFH-------AEA--T----DHLHRTIQLIKE------------LGMKAGVALNPGTP---------V 118 (211)
T ss_pred HHHHHHcCCCEEEEC-------ccc--h----hhHHHHHHHHHH------------CCCeEEEEecCCCC---------H
Confidence 445668899999775 121 1 112233333332 24566666654321 1
Q ss_pred cCHHHHhccccEEEEecccC
Q 014108 277 VDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 277 ~d~~~l~~~vD~v~lMtYD~ 296 (430)
..+.++...+|++.+|+++.
T Consensus 119 ~~~~~~~~~~d~i~~~~~~~ 138 (211)
T cd00429 119 EVLEPYLDEVDLVLVMSVNP 138 (211)
T ss_pred HHHHHHHhhCCEEEEEEECC
Confidence 23556666689999999864
No 89
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=46.40 E-value=1e+02 Score=36.13 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=42.3
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCc-------------------h---------h-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFP-------------------K---------E-LLRKKKLRDKAIDLILTECKEMEYD 206 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~-------------------~---------~-~l~~~~~R~~fi~~iv~~l~~~gfD 206 (430)
+.+++++|++|++|+.=|+++.-. . . -..++..|+-+++++.-++++|++|
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VD 637 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVD 637 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCc
Confidence 456777888899988666653210 0 0 1234788999999999999999999
Q ss_pred eEEecc
Q 014108 207 GIVLES 212 (430)
Q Consensus 207 GIdiD~ 212 (430)
|.-+|+
T Consensus 638 GFRfDl 643 (1111)
T TIGR02102 638 GFRFDM 643 (1111)
T ss_pred EEEEec
Confidence 999994
No 90
>PLN03244 alpha-amylase; Provisional
Probab=46.01 E-value=1.2e+02 Score=34.30 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=42.5
Q ss_pred hHHHHHHHhCCCcEEeEEeecC------------------------------Cchh--hcCCHHHHHHHHHHHHHHHHhc
Q 014108 156 AGWLLELRKGDALVLPRVVLEA------------------------------FPKE--LLRKKKLRDKAIDLILTECKEM 203 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~------------------------------~~~~--~l~~~~~R~~fi~~iv~~l~~~ 203 (430)
+.+|.++|+.|+.|+.=++.+. |... -..+++.|+-+++++.-++++|
T Consensus 444 K~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEy 523 (872)
T PLN03244 444 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEY 523 (872)
T ss_pred HHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 5678888888888886555421 1111 1245789999999999999999
Q ss_pred CCCeEEec
Q 014108 204 EYDGIVLE 211 (430)
Q Consensus 204 gfDGIdiD 211 (430)
++||+-+|
T Consensus 524 hIDGFRfD 531 (872)
T PLN03244 524 QIDGFQFH 531 (872)
T ss_pred CcCcceee
Confidence 99999999
No 91
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=45.55 E-value=81 Score=32.51 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEeccccc-cccCCCCCCHHHHHH----HHHHHHHHHHHhhc
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWST-WTAYGILHDPELRNM----ALEFIKQLGNALHS 244 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~-~~~~e~~~~~~d~~~----~~~fl~eLr~~L~~ 244 (430)
+++|+.|+-+.+.+.++++++|+|.|-+| ... .........++.... +-+++++|+++++.
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D-~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWD-FNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE--TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEec-cccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999 332 110111011122333 44578888877764
No 92
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=44.64 E-value=1.3e+02 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.2
Q ss_pred ceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 254 HLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 254 ~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
++.+.+.+.|.+. ......+...+|++.+|+++.
T Consensus 109 ~~~~g~~~~~~t~---------~e~~~~~~~~~d~i~~~~~~~ 142 (220)
T PRK05581 109 GIKAGLVLNPATP---------LEPLEDVLDLLDLVLLMSVNP 142 (220)
T ss_pred CCEEEEEECCCCC---------HHHHHHHHhhCCEEEEEEECC
Confidence 5566667655321 134566777799999999764
No 93
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=44.00 E-value=51 Score=28.61 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEC
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavp 262 (430)
.-+|+.-..+.+.+++++++.+-.-|.||. .|++.-..+.+....||..||+..-.. .+ .|.+++.
T Consensus 54 ~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~------lEYL~l~NgF~~v~KFL~~LkD~~~~~-------~~-~lIl~~~ 119 (136)
T PF05763_consen 54 AISPTNLHKLLDTIVRFLKENGNGVVIIDG------LEYLILENGFESVLKFLASLKDYALLN-------NG-TLILVVD 119 (136)
T ss_pred ccCchhhHHHHHHHHHHHHhCCCcEEEEec------HHHHHHHcCHHHHHHHHHHhHHHeecc-------CC-EEEEEEC
Confidence 345777889999999999996666788886 343333456677889999999876442 23 4566666
Q ss_pred CC
Q 014108 263 PP 264 (430)
Q Consensus 263 p~ 264 (430)
|.
T Consensus 120 ~~ 121 (136)
T PF05763_consen 120 PE 121 (136)
T ss_pred hh
Confidence 53
No 94
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=43.19 E-value=67 Score=35.69 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014108 184 RKKKLRDKAIDLILTECKEMEYDGIVLES 212 (430)
Q Consensus 184 ~~~~~R~~fi~~iv~~l~~~gfDGIdiD~ 212 (430)
.++..|+-+++++.-+++++|+||+-+|.
T Consensus 314 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 342 (688)
T TIGR02100 314 SHPRVLQMVMDSLRYWVTEMHVDGFRFDL 342 (688)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 46788999999999999999999999994
No 95
>PLN02803 beta-amylase
Probab=43.19 E-value=39 Score=35.92 Aligned_cols=44 Identities=11% Similarity=0.354 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCeEEeccccccccCCCCC----CHHHHHHHHHHHHHHHHH
Q 014108 193 IDLILTECKEMEYDGIVLESWSTWTAYGILH----DPELRNMALEFIKQLGNA 241 (430)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~----~~~d~~~~~~fl~eLr~~ 241 (430)
++.=+..+|..|.|||.+|+| |+.+. ..=|...|.++++-++++
T Consensus 109 l~~~L~~LK~~GVdGVmvDVW-----WGiVE~~~p~~YdWsgY~~l~~mvr~~ 156 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAW-----WGLVEKDGPMKYNWEGYAELVQMVQKH 156 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEee-----eeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 333345578899999999998 43321 122566777777766653
No 96
>PLN02411 12-oxophytodienoate reductase
Probab=42.92 E-value=1.8e+02 Score=29.95 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++.. ..+++-|||||.|.
T Consensus 163 ii~~f~~AA-~rA~~AGFDGVEIH 185 (391)
T PLN02411 163 VVEHYRQAA-LNAIRAGFDGIEIH 185 (391)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEc
Confidence 345555543 45567899999997
No 97
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.67 E-value=97 Score=29.45 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=44.5
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.+++.|.||+-|--.. +|. .++ +.++.+.+++ .++...+++.|.++ .
T Consensus 94 i~~~~~~Gadgvii~dlp----~e~---~~~-------~~~~~~~~~~--------~Gl~~~~~v~p~T~---------~ 142 (244)
T PRK13125 94 LNMARDVGADGVLFPDLL----IDY---PDD-------LEKYVEIIKN--------KGLKPVFFTSPKFP---------D 142 (244)
T ss_pred HHHHHHcCCCEEEECCCC----CCc---HHH-------HHHHHHHHHH--------cCCCEEEEECCCCC---------H
Confidence 445678899999985110 111 121 3445555555 47888889988653 2
Q ss_pred cCHHHHhccccEEEEeccc
Q 014108 277 VDLQSLSDAVDGFSLMTYD 295 (430)
Q Consensus 277 ~d~~~l~~~vD~v~lMtYD 295 (430)
..+..+.+.+|.|.+|+-+
T Consensus 143 e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 143 LLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred HHHHHHHHhCCCEEEEEeC
Confidence 4677888899999999753
No 98
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.50 E-value=43 Score=31.82 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=52.1
Q ss_pred CchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEE
Q 014108 178 FPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQL 257 (430)
Q Consensus 178 ~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~l 257 (430)
|-|-.+-||.+. .....+.+.+.+.|-|+|-|= +. ..-+-++..++++.+|+... |
T Consensus 16 ~~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG--------GS--~gvt~~~~~~~v~~ik~~~~-------------l 71 (240)
T COG1646 16 KRHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG--------GS--DGVTEENVDNVVEAIKERTD-------------L 71 (240)
T ss_pred ceEEEEeCcccc-cccHHHHHHHHHcCCCEEEEC--------Cc--ccccHHHHHHHHHHHHhhcC-------------C
Confidence 334445566554 677888888999999999985 21 11233456677788776332 3
Q ss_pred EEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 258 VYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 258 svavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
-+.+.|. +...+++++|.+.+|+-=-
T Consensus 72 PvilfP~-------------~~~~is~~aDavff~svLN 97 (240)
T COG1646 72 PVILFPG-------------SPSGISPYADAVFFPSVLN 97 (240)
T ss_pred CEEEecC-------------ChhccCccCCeEEEEEEec
Confidence 3444442 2346778999999998643
No 99
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=42.46 E-value=32 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014108 182 LLRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (430)
Q Consensus 182 ~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~ 212 (430)
.+..+.-|..+++.+++.+..-.||||-+|.
T Consensus 45 ~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 45 VWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred cCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 4444899999999999999988999999993
No 100
>PLN02161 beta-amylase
Probab=41.89 E-value=42 Score=35.51 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCeEEeccccccccCCCCC----CHHHHHHHHHHHHHHHHH
Q 014108 193 IDLILTECKEMEYDGIVLESWSTWTAYGILH----DPELRNMALEFIKQLGNA 241 (430)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~----~~~d~~~~~~fl~eLr~~ 241 (430)
++.=+..+|..|.|||.+|+| |+.+. ..=+...|.++.+-++++
T Consensus 119 l~~~L~~LK~~GVdGVmvDVW-----WGiVE~~~p~~YdWsgY~~l~~mvr~~ 166 (531)
T PLN02161 119 LTVSLKALKLAGVHGIAVEVW-----WGIVERFSPLEFKWSLYEELFRLISEA 166 (531)
T ss_pred HHHHHHHHHHcCCCEEEEEee-----eeeeecCCCCcCCcHHHHHHHHHHHHc
Confidence 344445678999999999998 33321 122556677777666653
No 101
>PLN02705 beta-amylase
Probab=40.51 E-value=43 Score=36.22 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCC----CHHHHHHHHHHHHHHHHH
Q 014108 194 DLILTECKEMEYDGIVLESWSTWTAYGILH----DPELRNMALEFIKQLGNA 241 (430)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~----~~~d~~~~~~fl~eLr~~ 241 (430)
..=+..+|..|.|||.+|+| |+.+. ..=+...|.+|+.-++++
T Consensus 271 ~a~L~aLK~aGVdGVmvDVW-----WGiVE~~~P~~YdWsgY~~L~~mvr~~ 317 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDCW-----WGIVEGWNPQKYVWSGYRELFNIIREF 317 (681)
T ss_pred HHHHHHHHHcCCCEEEEeee-----eeEeecCCCCcCCcHHHHHHHHHHHHc
Confidence 33344568899999999998 33321 122556677777666653
No 102
>PLN00197 beta-amylase; Provisional
Probab=40.48 E-value=45 Score=35.58 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCC----CHHHHHHHHHHHHHHHHH
Q 014108 194 DLILTECKEMEYDGIVLESWSTWTAYGILH----DPELRNMALEFIKQLGNA 241 (430)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~----~~~d~~~~~~fl~eLr~~ 241 (430)
+.-+..+|..|.|||.+|+| |+.+. ..=+...|.+|++-++++
T Consensus 130 ~~~L~~LK~~GVdGVmvDvW-----WGiVE~~~p~~YdWsgY~~L~~mvr~~ 176 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDVW-----WGLVERESPGVYNWGGYNELLEMAKRH 176 (573)
T ss_pred HHHHHHHHHcCCCEEEEeee-----eeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 33345578899999999998 44321 122566777777766653
No 103
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=40.28 E-value=30 Score=34.86 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCC-eEEEEEcC
Q 014108 395 PSLISISMRLEEAKLWGT-GIAIWEIG 420 (430)
Q Consensus 395 dd~~Si~~K~~~a~~~gl-Gv~iW~Lg 420 (430)
.|++.++..+++|+++|+ |..+|.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw 81 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW 81 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee
Confidence 389999999999999999 99988543
No 104
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.32 E-value=1.4e+02 Score=29.77 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecc---------cccc-----ccCCCCCCHHHHHHH-HHHHHHHHHHhhcccccccCC
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLES---------WSTW-----TAYGILHDPELRNMA-LEFIKQLGNALHSVNSVRNRK 252 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD~---------W~~~-----~~~e~~~~~~d~~~~-~~fl~eLr~~L~~~~~~~~~~ 252 (430)
..+.|++.. ..+++.|||||+|.. +++. ..|++ +.+.|-.| .+.|+++|+++..
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG--slenR~rf~~EiI~aIR~avG~-------- 215 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG--SLENRARLLLEIYDAIRAAVGP-------- 215 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC--CHHHHHHHHHHHHHHHHHHcCC--------
Confidence 345566544 456788999999962 1211 01221 23444433 3577777777653
Q ss_pred cceEEEEEECCCCCCCCCCCCCCccC----HHHHhcc-ccEEEEeccc
Q 014108 253 QHLQLVYVIGPPHSEKFQPHDFGPVD----LQSLSDA-VDGFSLMTYD 295 (430)
Q Consensus 253 ~~~~lsvavpp~~~~~~~~~~~~~~d----~~~l~~~-vD~v~lMtYD 295 (430)
++.|.+-+.+... ..+. ++..+ .+.|.+. +|++.|..--
T Consensus 216 -d~~v~vris~~~~--~~~g-~~~eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 216 -GFPVGIKLNSADF--QRGG-FTEEDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred -CCeEEEEEcHHHc--CCCC-CCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 5677777765211 0111 11111 2244444 7899886543
No 105
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=39.04 E-value=81 Score=35.54 Aligned_cols=135 Identities=18% Similarity=0.227 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCcchhhccCCCCcEEEEEEEEEeeCC-ceeeecCCCCCChHHHHHHHh--CCCcEEeEEeec-CCch-hh
Q 014108 108 LAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQG-TSLILEGRHNADAGWLLELRK--GDALVLPRVVLE-AFPK-EL 182 (430)
Q Consensus 108 lgY~~~w~~~~y~~~~~~~~klT~vsp~w~~i~~~g-~~~~~~g~~d~d~~~l~~~~~--~~~kv~p~v~~~-~~~~-~~ 182 (430)
.||-.-|++.++-...... .|.+...+...... ..+.+.|.. .++.++.... +....+|.-++| .|.. .-
T Consensus 201 ~gyg~~~~n~~~~~fd~~~---~~~~~~~~~~e~~~ldyyv~~G~~--~~~vi~~yt~lTGkp~l~P~Wa~G~~~~~~~~ 275 (772)
T COG1501 201 RGYGLFVDNSAYGSFDVGS---EEYSYVQFSVEGGQLDYYVIAGPT--PKDVLEKYTDLTGKPPLPPKWALGWLWTSRYT 275 (772)
T ss_pred cceEEEEECCCceEEEcCC---cceEEEEEEecCCcEEEEEEeCCC--HHHHHHHHHHhhCCCCCCCceecCCCceeccc
Confidence 4555555554433222221 44444433333211 234455642 2466776655 778899999999 4432 22
Q ss_pred cCCHHHHHHHHHHHHHHHHhc--CCCeEEeccc--c-ccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEE
Q 014108 183 LRKKKLRDKAIDLILTECKEM--EYDGIVLESW--S-TWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQL 257 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~--gfDGIdiD~W--~-~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~l 257 (430)
-.+++.+.+ .++.+++. .+|++.+|+| . .|..|.. ++..-.+- ++|-+.||+ ++..|
T Consensus 276 ~~~e~~v~~----~i~~~~~~~IP~d~~~lD~~~~~~~~~~F~w--d~~~FP~p----k~mi~~l~~--------~Gikl 337 (772)
T COG1501 276 YYDEDEVLE----FIDEMRERDIPLDVFVLDIDFWMDNWGDFTW--DPDRFPDP----KQMIAELHE--------KGIKL 337 (772)
T ss_pred cccHHHHHH----HHhhcccccCcceEEEEeehhhhccccceEE--CcccCCCH----HHHHHHHHh--------cCceE
Confidence 233444444 44556555 4899999964 2 1211211 11111111 244555665 47888
Q ss_pred EEEECCCC
Q 014108 258 VYVIGPPH 265 (430)
Q Consensus 258 svavpp~~ 265 (430)
++.+-|..
T Consensus 338 ~~~i~P~i 345 (772)
T COG1501 338 IVIINPYI 345 (772)
T ss_pred EEEecccc
Confidence 88888854
No 106
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.90 E-value=2.5e+02 Score=28.17 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++. ...+++-|||||+|.
T Consensus 150 ii~~f~~a-A~~a~~aGfDgVeih 172 (338)
T cd02933 150 IVADFRQA-ARNAIEAGFDGVEIH 172 (338)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEc
Confidence 34555554 345667799999997
No 107
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=38.73 E-value=3.3e+02 Score=25.39 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=60.3
Q ss_pred CChHHHHHHHhCCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCC-eEEe--ccccccccCCCCCCHHHHHH
Q 014108 154 ADAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYD-GIVL--ESWSTWTAYGILHDPELRNM 230 (430)
Q Consensus 154 ~d~~~l~~~~~~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfD-GIdi--D~W~~~~~~e~~~~~~d~~~ 230 (430)
+.+++++.++..|++++|....++- ..-....+.=.+-+.+.++.++..||- |-.| | .+ +... ..+-...
T Consensus 53 lt~~e~~~i~~~Gl~~~pIyq~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p~gs~IYfa-vD----~d~~-~~~~~~~ 125 (212)
T cd06418 53 LTATELETITAAGLKVFPIYQGGGY-SLDYFGYEQGVKDARDAVAAARALGFPPGTIIYFA-VD----FDAL-DDEVTEV 125 (212)
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCc-cccccCHHHHHHHHHHHHHHHHHcCCCCCCEEEEE-ee----cCCC-cchhHHH
Confidence 4688999999999999986543322 222233445556678888899999987 5544 2 11 2221 2223346
Q ss_pred HHHHHHHHHHHhhcccccccCCcceEEEEEEC
Q 014108 231 ALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (430)
Q Consensus 231 ~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavp 262 (430)
-..+++.+.++|+. .+|.+-+--+
T Consensus 126 v~~Y~~a~~~~l~~--------~gY~~GiYg~ 149 (212)
T cd06418 126 ILPYFRGWNDALHE--------AGYRIGIYGS 149 (212)
T ss_pred HHHHHHHHHHHHHh--------cCCceeEEcC
Confidence 77899999999987 4666555433
No 108
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=38.57 E-value=1.9e+02 Score=27.25 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=57.7
Q ss_pred ChHHHHHHHhC--CCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHH
Q 014108 155 DAGWLLELRKG--DALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMAL 232 (430)
Q Consensus 155 d~~~l~~~~~~--~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~ 232 (430)
.+..++.+|+. +..+= + |-|+.+|+ ++++. +.+.|.|=|-+. +|.. ....
T Consensus 49 g~~~i~~lr~~~~~~~~d--v------HLMv~~P~---~~i~~----~~~~gad~I~~H-------~Ea~------~~~~ 100 (223)
T PRK08745 49 GPMVCQALRKHGITAPID--V------HLMVEPVD---RIVPD----FADAGATTISFH-------PEAS------RHVH 100 (223)
T ss_pred CHHHHHHHHhhCCCCCEE--E------EeccCCHH---HHHHH----HHHhCCCEEEEc-------ccCc------ccHH
Confidence 35567777652 22110 1 33556663 35444 444699999998 5642 1233
Q ss_pred HHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCC
Q 014108 233 EFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFS 297 (430)
Q Consensus 233 ~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~ 297 (430)
.+++.+|+ .|....+++-|.++ -..+..+.+.+|.|.+||-+-.
T Consensus 101 ~~l~~Ir~------------~g~k~GlalnP~T~---------~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 101 RTIQLIKS------------HGCQAGLVLNPATP---------VDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred HHHHHHHH------------CCCceeEEeCCCCC---------HHHHHHHHhhcCEEEEEEECCC
Confidence 45555554 25567789988653 2456778889999999998743
No 109
>PLN02334 ribulose-phosphate 3-epimerase
Probab=38.33 E-value=1.7e+02 Score=27.33 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.+.+.|.|||-+. .+. ...+ . ..+.++.... .++.+-+++.|.++ .
T Consensus 81 ~~~~~~~gad~v~vH-------~~q--~~~d--~---~~~~~~~i~~---------~g~~iGls~~~~t~---------~ 128 (229)
T PLN02334 81 VPDFAKAGASIFTFH-------IEQ--ASTI--H---LHRLIQQIKS---------AGMKAGVVLNPGTP---------V 128 (229)
T ss_pred HHHHHHcCCCEEEEe-------ecc--ccch--h---HHHHHHHHHH---------CCCeEEEEECCCCC---------H
Confidence 344567899999766 231 0111 1 2233333333 25667778776432 1
Q ss_pred cCHHHHhcc--ccEEEEecccC
Q 014108 277 VDLQSLSDA--VDGFSLMTYDF 296 (430)
Q Consensus 277 ~d~~~l~~~--vD~v~lMtYD~ 296 (430)
.....+.+. +|++.+|+..-
T Consensus 129 ~~~~~~~~~~~~Dyi~~~~v~p 150 (229)
T PLN02334 129 EAVEPVVEKGLVDMVLVMSVEP 150 (229)
T ss_pred HHHHHHHhccCCCEEEEEEEec
Confidence 335566677 99999999753
No 110
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=37.32 E-value=75 Score=35.65 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=56.5
Q ss_pred hHHHHHHHhCCCcEEeEEeecC------------------------------Cchhh--cCCHHHHHHHHHHHHHHHHhc
Q 014108 156 AGWLLELRKGDALVLPRVVLEA------------------------------FPKEL--LRKKKLRDKAIDLILTECKEM 203 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~------------------------------~~~~~--l~~~~~R~~fi~~iv~~l~~~ 203 (430)
+.+++++|+.|++|+.=++.+. |.... ..+++.|+-+++++.-++++|
T Consensus 303 k~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey 382 (758)
T PLN02447 303 KYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY 382 (758)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 4577888888998886555431 11111 245788999999999999999
Q ss_pred CCCeEEeccccccc--------cCCC-----CCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 204 EYDGIVLESWSTWT--------AYGI-----LHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 204 gfDGIdiD~W~~~~--------~~e~-----~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
++||+-+|.=..+. .|.. ....+|.+ -..||+++.+.+|..
T Consensus 383 ~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~-a~~fL~~~N~~i~~~ 436 (758)
T PLN02447 383 KFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVD-AVVYLMLANDLLHGL 436 (758)
T ss_pred CcccccccchhhhhccccCcccccccCcccccCCccChH-HHHHHHHHHHHHHHh
Confidence 99999999322110 0100 00112333 356888888888864
No 111
>PRK09505 malS alpha-amylase; Reviewed
Probab=36.85 E-value=57 Score=36.18 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~ 212 (430)
+.+++.|+.+++.+..+++++|+||+-||.
T Consensus 433 ~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 433 IDGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 457799999999999999999999999994
No 112
>PLN02801 beta-amylase
Probab=36.55 E-value=56 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCeEEeccccccccCCCCC----CHHHHHHHHHHHHHHHHH
Q 014108 193 IDLILTECKEMEYDGIVLESWSTWTAYGILH----DPELRNMALEFIKQLGNA 241 (430)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~----~~~d~~~~~~fl~eLr~~ 241 (430)
+++=+..+|..|.|||.+|+| |+.+. ..=+...|.++.+-++++
T Consensus 39 l~~~L~~LK~~GVdGVmvDVW-----WGiVE~~~P~~YdWsgY~~l~~mvr~~ 86 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVW-----WGIVESKGPKQYDWSAYRSLFELVQSF 86 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeee-----eeeeccCCCCccCcHHHHHHHHHHHHc
Confidence 344455678999999999998 33321 122566777777766653
No 113
>PRK11649 putative peptidase; Provisional
Probab=36.45 E-value=36 Score=35.64 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=25.1
Q ss_pred EEeeccCCCchhHHHHhCcccCCCCHHHHHHH
Q 014108 59 TKYSTRANRSATHMHQRGLVKTDVNYQEILTE 90 (430)
Q Consensus 59 ~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~ 90 (430)
..|.+++||||.+|+++ .|++..++.+-
T Consensus 96 ~~~~Vk~GDTl~~iL~r----~Gi~~~di~~l 123 (439)
T PRK11649 96 HEYVVSTGDTLSSILNQ----YGIDMSDISQL 123 (439)
T ss_pred EEEEeCCCCCHHHHHHH----cCCCHHHHHHH
Confidence 58999999999999999 99998888655
No 114
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=35.44 E-value=3.4e+02 Score=28.69 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=68.3
Q ss_pred HHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcce--EEEEEECCCCCCCCCCCCCCc
Q 014108 199 ECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL--QLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 199 ~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~--~lsvavpp~~~~~~~~~~~~~ 276 (430)
.+.+.|+..+.|-. -+.. ...+.+-+...++.+++..+. .+. .+++.+.|- ..
T Consensus 126 ~~~~~G~~~i~Lvs------Ge~p-~~~~~eyi~e~i~~I~~~~~~--------~g~i~~v~inig~l----------t~ 180 (469)
T PRK09613 126 ALEDMGHKRLALVA------GEDP-PNCDIEYILESIKTIYSTKHG--------NGEIRRVNVNIAPT----------TV 180 (469)
T ss_pred HHHHCCCCEEEEEe------CCCC-CCCCHHHHHHHHHHHHHhccc--------cCcceeeEEEeecC----------CH
Confidence 45778999999952 1221 223456677888888875543 232 355555542 24
Q ss_pred cCHHHHhcc-ccEEEEe--cccC---CCCCCCCCCCChhhHHHHHHHHhcCCCCCCCCC--CCcEEEeecc
Q 014108 277 VDLQSLSDA-VDGFSLM--TYDF---SGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSL--ARKIFLGINF 339 (430)
Q Consensus 277 ~d~~~l~~~-vD~v~lM--tYD~---~~~~~pgp~APl~~v~~~v~~~~~~~~~~~~ip--~~KivlGipf 339 (430)
.++..|.+. +|.+.++ ||+- ..-++.||.....|--++++.+.+ +|++ -.=+++||+=
T Consensus 181 eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~-----aGi~~Vg~G~L~GLge 246 (469)
T PRK09613 181 ENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME-----AGIDDVGIGVLFGLYD 246 (469)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH-----cCCCeeCeEEEEcCCC
Confidence 678888887 8997664 7762 111344787888888888888876 4443 1234566553
No 115
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=34.92 E-value=1.4e+02 Score=28.19 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=48.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEE
Q 014108 181 ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYV 260 (430)
Q Consensus 181 ~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsva 260 (430)
-|+.+| +++++. .-+.|.|-|.+. +|. .+ ..-..++.+|+ .|....++
T Consensus 68 LMV~~p---~~~i~~----fa~agad~It~H-------~E~--~~----~~~r~i~~Ik~------------~G~kaGv~ 115 (220)
T COG0036 68 LMVENP---DRYIEA----FAKAGADIITFH-------AEA--TE----HIHRTIQLIKE------------LGVKAGLV 115 (220)
T ss_pred EecCCH---HHHHHH----HHHhCCCEEEEE-------ecc--Cc----CHHHHHHHHHH------------cCCeEEEE
Confidence 356666 334333 445689999998 563 11 12235555554 35667889
Q ss_pred ECCCCCCCCCCCCCCccCHHHHhccccEEEEeccc
Q 014108 261 IGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (430)
Q Consensus 261 vpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (430)
+-|.++- ..+.-+.+.||.+.+||-+
T Consensus 116 lnP~Tp~---------~~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 116 LNPATPL---------EALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred ECCCCCH---------HHHHHHHhhCCEEEEEeEC
Confidence 9887642 4567788899999999976
No 116
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=34.85 E-value=1.1e+02 Score=29.98 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCeEEecc---ccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 192 AIDLILTECKEMEYDGIVLES---WSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 192 fi~~iv~~l~~~gfDGIdiD~---W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
.+.+-.+-+.+.|||||-||. |.+++.+..............|+.+|++...+.
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~ 183 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAA 183 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhc
Confidence 444556667788999999982 222221221123445566788999999988874
No 117
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=34.61 E-value=2.2e+02 Score=28.96 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++.. ..+++-|||||+|.
T Consensus 148 ii~~f~~AA-~ra~~aGfDgVEih 170 (370)
T cd02929 148 VRRWYVDAA-LRARDAGFDIVYVY 170 (370)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEc
Confidence 456666644 45567899999997
No 118
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.98 E-value=2.3e+02 Score=28.23 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecc---------cccc-----ccCCCCCCHHHH-HHHHHHHHHHHHHhhcccccccCC
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLES---------WSTW-----TAYGILHDPELR-NMALEFIKQLGNALHSVNSVRNRK 252 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD~---------W~~~-----~~~e~~~~~~d~-~~~~~fl~eLr~~L~~~~~~~~~~ 252 (430)
..+.|++.+ ..+++-|||||+|.. +++. ..|++ +-+.| +-..+.++.+|+++.+
T Consensus 152 ii~~~~~aA-~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGg--sl~nr~rf~~eiv~aIR~~vG~-------- 220 (336)
T cd02932 152 VVDAFVAAA-RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG--SLENRMRFLLEVVDAVRAVWPE-------- 220 (336)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCC--CHHHHhHHHHHHHHHHHHHcCC--------
Confidence 345555544 344557999999982 1110 01111 12222 2334567777777643
Q ss_pred cceEEEEEECC
Q 014108 253 QHLQLVYVIGP 263 (430)
Q Consensus 253 ~~~~lsvavpp 263 (430)
++.|.+-+.+
T Consensus 221 -d~~v~vri~~ 230 (336)
T cd02932 221 -DKPLFVRISA 230 (336)
T ss_pred -CceEEEEEcc
Confidence 5667777775
No 119
>PLN02905 beta-amylase
Probab=33.87 E-value=63 Score=35.10 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCeEEeccccccccCCCCC----CHHHHHHHHHHHHHHHHH
Q 014108 194 DLILTECKEMEYDGIVLESWSTWTAYGILH----DPELRNMALEFIKQLGNA 241 (430)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~----~~~d~~~~~~fl~eLr~~ 241 (430)
+.=+..+|..|.|||.+|+| |+.+. ..=+...|.+|++-++++
T Consensus 289 ~a~L~aLK~aGVdGVmvDVW-----WGiVE~~gP~~YdWsgY~~L~~mvr~~ 335 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDCW-----WGIVEAHAPQEYNWNGYKRLFQMVREL 335 (702)
T ss_pred HHHHHHHHHcCCCEEEEeee-----eeeeecCCCCcCCcHHHHHHHHHHHHc
Confidence 33344578899999999998 33321 122556777777766653
No 120
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=33.73 E-value=1.5e+02 Score=28.14 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=57.4
Q ss_pred ChHHHHHHHh-CCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHH
Q 014108 155 DAGWLLELRK-GDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALE 233 (430)
Q Consensus 155 d~~~l~~~~~-~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~ 233 (430)
....++.+|+ .+..+= + +-|+.+|. ++++. +.+.|.|=|.+. +|.. .. ....
T Consensus 47 g~~~i~~ir~~t~~~~D--v------HLMv~~P~---~~i~~----~~~aGad~it~H-------~Ea~--~~---~~~~ 99 (229)
T PRK09722 47 SPFFVSQVKKLASKPLD--V------HLMVTDPQ---DYIDQ----LADAGADFITLH-------PETI--NG---QAFR 99 (229)
T ss_pred CHHHHHHHHhcCCCCeE--E------EEEecCHH---HHHHH----HHHcCCCEEEEC-------ccCC--cc---hHHH
Confidence 4667788876 222110 1 33556664 35544 344599999998 5642 11 1223
Q ss_pred HHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 234 FIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 234 fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
+++.+|+ .|....+++-|.++ ..++..+.+.+|.|.+||-+-
T Consensus 100 ~i~~Ik~------------~G~kaGlalnP~T~---------~~~l~~~l~~vD~VLvMsV~P 141 (229)
T PRK09722 100 LIDEIRR------------AGMKVGLVLNPETP---------VESIKYYIHLLDKITVMTVDP 141 (229)
T ss_pred HHHHHHH------------cCCCEEEEeCCCCC---------HHHHHHHHHhcCEEEEEEEcC
Confidence 4554444 35667889988653 256678888999999999863
No 121
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=33.64 E-value=1.1e+02 Score=31.30 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHhCCCcEEeEEeecC--Cc---hh--------hcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccc-------c-
Q 014108 158 WLLELRKGDALVLPRVVLEA--FP---KE--------LLRKKKLRDKAIDLILTECKEMEYDGIVLESWST-------W- 216 (430)
Q Consensus 158 ~l~~~~~~~~kv~p~v~~~~--~~---~~--------~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~-------~- 216 (430)
+++++++.|+..+-.++... |. .. .--.+...+.|+.=+++.++.+.=.||.|+.=++ |
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~ 188 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWA 188 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCC
Confidence 56667777776663343321 10 00 1112457888998888888888778888873222 1
Q ss_pred -ccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 217 -TAYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 217 -~~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
...|+ .+-+.+....|++.|+.+|.+.
T Consensus 189 ~~~QEG--~~~~~~e~a~vI~~L~~~L~~~ 216 (384)
T PF14587_consen 189 GGSQEG--CHFTNEEQADVIRALDKALKKR 216 (384)
T ss_dssp --SS-B------HHHHHHHHHHHHHHHHHH
T ss_pred CCCcCC--CCCCHHHHHHHHHHHHHHHHhc
Confidence 11222 2334556688999999999973
No 122
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.27 E-value=40 Score=35.16 Aligned_cols=57 Identities=21% Similarity=0.190 Sum_probs=43.6
Q ss_pred chhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014108 179 PKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (430)
Q Consensus 179 ~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~ 244 (430)
+...+.|..-|++.++.|++++++.|||| -|- ..++..|..+ .|....+-|...|++
T Consensus 96 DpRplrdk~yqq~c~~~I~~yL~engfd~-pis-------~k~l~~PS~k-~F~~IFK~LY~~lDp 152 (622)
T COG5185 96 DPRPLRDKNYQQACQEEIYDYLKENGFDI-PIS-------IKFLKQPSQK-GFIIIFKWLYLRLDP 152 (622)
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCCCc-chh-------HHHhcCCccc-cHHHHHHHHHhccCC
Confidence 34678899999999999999999999998 222 1233356655 488888888888875
No 123
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=33.15 E-value=1.1e+02 Score=26.36 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=31.4
Q ss_pred HHHHHHhCCCcEEeEEeecC----CchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014108 158 WLLELRKGDALVLPRVVLEA----FPKELLRKKKLRDKAIDLILTECKEMEYDGIVL 210 (430)
Q Consensus 158 ~l~~~~~~~~kv~p~v~~~~----~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdi 210 (430)
+|+.+++.|++++ +++-. |..-.=-+.+.|+.+.+.|-..|+++||.=+|+
T Consensus 41 ~L~~~k~~g~~~l--fVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 41 LLDVCKELGIDVL--FVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHTT-EEE--EEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHcCCceE--EEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4566677776665 54432 433333478899999999999999999955555
No 124
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=32.58 E-value=57 Score=30.22 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCC
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSE 267 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~ 267 (430)
..+.+...+.+.+++.+.+-+.||.-..+. .. .++ ..+..|+..|...+++. +....++......
T Consensus 99 ~~~~l~~~i~~~i~~~~~~~vVIDsls~l~--~~-~~~---~~~r~~l~~l~~~l~~~--------~~t~llt~~~~~~- 163 (226)
T PF06745_consen 99 DLEELLSKIREAIEELKPDRVVIDSLSALL--LY-DDP---EELRRFLRALIKFLKSR--------GVTTLLTSEMPSG- 163 (226)
T ss_dssp CHHHHHHHHHHHHHHHTSSEEEEETHHHHT--TS-SSG---GGHHHHHHHHHHHHHHT--------TEEEEEEEEESSS-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECHHHHh--hc-CCH---HHHHHHHHHHHHHHHHC--------CCEEEEEEccccC-
Confidence 456788999999999999999999544331 11 123 23556778888887763 3333333321101
Q ss_pred CCCCCCCCccCHHHHhc-cccEEEEecccCCCC
Q 014108 268 KFQPHDFGPVDLQSLSD-AVDGFSLMTYDFSGP 299 (430)
Q Consensus 268 ~~~~~~~~~~d~~~l~~-~vD~v~lMtYD~~~~ 299 (430)
.....-..+.. .+|.++.|.|...+.
T Consensus 164 ------~~~~~~~~i~~~l~D~vI~L~~~~~~~ 190 (226)
T PF06745_consen 164 ------SEDDGTFGIEHYLADGVIELRYEEEGG 190 (226)
T ss_dssp ------SSSSSSTSHHHHHSSEEEEEEEEEETT
T ss_pred ------cccccccchhhhcccEEEEEEEEeeCC
Confidence 01112234555 799999999986653
No 125
>PTZ00334 trans-sialidase; Provisional
Probab=32.25 E-value=11 Score=42.07 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=26.8
Q ss_pred cCCCCCCCCCCchhhhhhhhhhcccCccccccceeEEeee
Q 014108 6 DRRVAPSPGRPKNRVESAARLDQFSDSASDRKLITIFVIF 45 (430)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (430)
+|||+-|||||...-||--|+ .+-.|+..+--+.|
T Consensus 16 RRRVTGSSGRRREGrESEpQR-----PNMSRrvF~SAVLL 50 (780)
T PTZ00334 16 RRRVTGSSGRRREGRESEPQR-----PNMSRRVFTSAVLL 50 (780)
T ss_pred cCcCCCCCCCcCCCCCCCCCC-----CCcchhhHHHHHHH
Confidence 479999999999998988887 56667766654434
No 126
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=32.01 E-value=2e+02 Score=26.57 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=47.5
Q ss_pred ChHHHHHHHhCCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHh-------cCC--CeEEeccccccccCCCCCCH
Q 014108 155 DAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKE-------MEY--DGIVLESWSTWTAYGILHDP 225 (430)
Q Consensus 155 d~~~l~~~~~~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~-------~gf--DGIdiD~W~~~~~~e~~~~~ 225 (430)
++..+..+++.+..++. +...+-+..+-.+++.|...+..+++++.+ .|+ +-|.|| + +++...++
T Consensus 105 ~~~~~~l~a~~~~~vV~-m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~D---P--gigf~~~~ 178 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVL-MHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILD---P--GIGFGKDP 178 (210)
T ss_dssp STTHHHHHHHHTSEEEE-ESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEE---T--TTTSSTTH
T ss_pred cchhhhhhhcCCCEEEE-EecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeec---c--ccCcCCCH
Confidence 56777877776665553 334433445556667776777777777776 799 889999 1 12222234
Q ss_pred HHHHHHHHHHHHHHHH
Q 014108 226 ELRNMALEFIKQLGNA 241 (430)
Q Consensus 226 ~d~~~~~~fl~eLr~~ 241 (430)
+..-.....+++++..
T Consensus 179 ~~~~~~l~~i~~~~~~ 194 (210)
T PF00809_consen 179 EQNLELLRNIEELKEL 194 (210)
T ss_dssp HHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444555555544
No 127
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=30.75 E-value=1.2e+02 Score=27.33 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=37.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHH
Q 014108 182 LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQL 238 (430)
Q Consensus 182 ~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eL 238 (430)
.=++++..+++|.|-+..+.+-|..|+.|- ++ +|+.++.+..+++..
T Consensus 143 ~~k~~eik~kiIkNsinvlmtRGIrGlyiy-------ae---Dpelrerl~~l~~~~ 189 (191)
T COG3410 143 PEKNQEIKEKIIKNSINVLMTRGIRGLYIY-------AE---DPELRERLVELKRGK 189 (191)
T ss_pred hhhCHHHHHHHHHHHHHHHHhcccceEEEE-------Ee---CHHHHHHHHHHHhhh
Confidence 345678888999999999999999999997 44 688888777666544
No 128
>PRK14057 epimerase; Provisional
Probab=29.88 E-value=1.2e+02 Score=29.30 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=50.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEE
Q 014108 181 ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYV 260 (430)
Q Consensus 181 ~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsva 260 (430)
-|+.+|+ ++++. +.+.|.|=|-+. +|.. . .....++.+|+.=.+ ...++.+....+|
T Consensus 82 LMV~~P~---~~i~~----~~~aGad~It~H-------~Ea~---~---~~~~~l~~Ir~~G~k---~~~~~~~~kaGlA 138 (254)
T PRK14057 82 LMVADQW---TAAQA----CVKAGAHCITLQ-------AEGD---I---HLHHTLSWLGQQTVP---VIGGEMPVIRGIS 138 (254)
T ss_pred eeeCCHH---HHHHH----HHHhCCCEEEEe-------eccc---c---CHHHHHHHHHHcCCC---cccccccceeEEE
Confidence 3555653 45554 334599999998 5642 1 133455555553100 0011234677889
Q ss_pred ECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 261 IGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 261 vpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
+-|.++ ...+..+.+.+|.|.+||-+=
T Consensus 139 lnP~Tp---------~e~i~~~l~~vD~VLvMtV~P 165 (254)
T PRK14057 139 LCPATP---------LDVIIPILSDVEVIQLLAVNP 165 (254)
T ss_pred ECCCCC---------HHHHHHHHHhCCEEEEEEECC
Confidence 998764 246778888999999999863
No 129
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.81 E-value=2.6e+02 Score=28.17 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecc---------cccc-----ccCCCCCCHHHH-HHHHHHHHHHHHHhhcccccccCC
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLES---------WSTW-----TAYGILHDPELR-NMALEFIKQLGNALHSVNSVRNRK 252 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD~---------W~~~-----~~~e~~~~~~d~-~~~~~fl~eLr~~L~~~~~~~~~~ 252 (430)
..+.|++... .+++-|||||+|.. .++. ..|++ +.+.| .-..+.++++|+++..
T Consensus 135 i~~~f~~aA~-~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG--slenR~r~~~eiv~aIR~~vG~-------- 203 (353)
T cd02930 135 TIEDFARCAA-LAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG--SFENRMRFPVEIVRAVRAAVGE-------- 203 (353)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCC--CHHHHhHHHHHHHHHHHHHcCC--------
Confidence 3455555443 45667999999972 0110 01111 22333 3344677888887753
Q ss_pred cceEEEEEECC
Q 014108 253 QHLQLVYVIGP 263 (430)
Q Consensus 253 ~~~~lsvavpp 263 (430)
++.+.+-+.+
T Consensus 204 -d~~v~iRi~~ 213 (353)
T cd02930 204 -DFIIIYRLSM 213 (353)
T ss_pred -CceEEEEecc
Confidence 5566666654
No 130
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.45 E-value=2.8e+02 Score=26.50 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=84.3
Q ss_pred hhhccCCCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeecCCc-hhhcCCHHHHHHHHHHHHHH
Q 014108 121 LAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFP-KELLRKKKLRDKAIDLILTE 199 (430)
Q Consensus 121 ~~~~~~~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~~~~-~~~l~~~~~R~~fi~~iv~~ 199 (430)
.++..+++++.|=+.|-. . .+... ++-+..+..+|++++.+. .|||- ..++ .+..++.-++.
T Consensus 17 ~Le~~g~yID~lKfg~Gt------~-~l~~~-~~l~eki~la~~~~V~v~----~GGtl~E~~~-----~q~~~~~Yl~~ 79 (237)
T TIGR03849 17 YLKVCGDYITFVKFGWGT------S-ALIDR-DIVKEKIEMYKDYGIKVY----PGGTLFEIAH-----SKGKFDEYLNE 79 (237)
T ss_pred HHHHhhhheeeEEecCce------E-eeccH-HHHHHHHHHHHHcCCeEe----CCccHHHHHH-----HhhhHHHHHHH
Confidence 355666667776666522 1 12110 112334444566776554 46643 2222 33567778889
Q ss_pred HHhcCCCeEEeccccccccCCCCC-CHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccC
Q 014108 200 CKEMEYDGIVLESWSTWTAYGILH-DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVD 278 (430)
Q Consensus 200 l~~~gfDGIdiD~W~~~~~~e~~~-~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d 278 (430)
|++.|||.|.|. -+.+. +.+++. .+++.+++. ++.+-.-+..+... ........+
T Consensus 80 ~k~lGf~~IEiS-------~G~~~i~~~~~~---rlI~~~~~~------------g~~v~~EvG~K~~~--~~~~~~~~~ 135 (237)
T TIGR03849 80 CDELGFEAVEIS-------DGSMEISLEERC---NLIERAKDN------------GFMVLSEVGKKSPE--KDSELTPDD 135 (237)
T ss_pred HHHcCCCEEEEc-------CCccCCCHHHHH---HHHHHHHhC------------CCeEeccccccCCc--ccccCCHHH
Confidence 999999999996 12221 344443 344444432 33322222221110 000112223
Q ss_pred HH-----HHhccccEEEEecccCCCCCCCCCCC-ChhhHHHHHHHHhcCCCCCCCCCCCcEEEeecc
Q 014108 279 LQ-----SLSDAVDGFSLMTYDFSGPHNPGPNA-PLKWISFTLQLLLGSPGIGTRSLARKIFLGINF 339 (430)
Q Consensus 279 ~~-----~l~~~vD~v~lMtYD~~~~~~pgp~A-Pl~~v~~~v~~~~~~~~~~~~ip~~KivlGipf 339 (430)
+- .|..=+|+|++-+=+-... -|-.- --.|-.+.++.++ ..+|.+||+.--|.
T Consensus 136 ~i~~~~~~LeAGA~~ViiEarEsg~~--~Gi~~~~g~~r~d~v~~i~------~~l~~eklifEAp~ 194 (237)
T TIGR03849 136 RIKLINKDLEAGADYVIIEGRESGKN--IGLFDEKGNVKEDELDVLA------ENVDINKVIFEAPQ 194 (237)
T ss_pred HHHHHHHHHHCCCcEEEEeehhcCCC--cceeCCCCCCchHHHHHHH------hhCChhcEEEECCC
Confidence 22 2345578888877332111 11111 1235566777777 35789999877663
No 131
>PLN02591 tryptophan synthase
Probab=29.05 E-value=4.8e+02 Score=25.02 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=54.6
Q ss_pred HHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCc
Q 014108 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGP 276 (430)
Q Consensus 197 v~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~ 276 (430)
++.|++-|.||+-|- .+ ..+. ..++++++++ .++.++.-++|.++ .
T Consensus 99 ~~~~~~aGv~Gviip---------DL-P~ee-------~~~~~~~~~~--------~gl~~I~lv~Ptt~---------~ 144 (250)
T PLN02591 99 MATIKEAGVHGLVVP---------DL-PLEE-------TEALRAEAAK--------NGIELVLLTTPTTP---------T 144 (250)
T ss_pred HHHHHHcCCCEEEeC---------CC-CHHH-------HHHHHHHHHH--------cCCeEEEEeCCCCC---------H
Confidence 455888999999983 11 2232 2455555555 47888888877542 1
Q ss_pred cCHHHHhccccEEEEecccCCCCCCCCCCCChh-hHHHHHHHHhcCCCCCCCCCCCcEEEee
Q 014108 277 VDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLK-WISFTLQLLLGSPGIGTRSLARKIFLGI 337 (430)
Q Consensus 277 ~d~~~l~~~vD~v~lMtYD~~~~~~pgp~APl~-~v~~~v~~~~~~~~~~~~ip~~KivlGi 337 (430)
..+..+++..+.|+ |--+..+.+|..+.++ -+++.++.+.+ ...-.+++|.
T Consensus 145 ~ri~~ia~~~~gFI---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~-------~~~~Pv~vGF 196 (250)
T PLN02591 145 ERMKAIAEASEGFV---YLVSSTGVTGARASVSGRVESLLQELKE-------VTDKPVAVGF 196 (250)
T ss_pred HHHHHHHHhCCCcE---EEeeCCCCcCCCcCCchhHHHHHHHHHh-------cCCCceEEeC
Confidence 34677777774444 3222234556544432 35555666642 3345566653
No 132
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.85 E-value=33 Score=37.61 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=26.7
Q ss_pred eeEEeeccCCCchhHHHHhCcccCCCCHHHHHHH
Q 014108 57 YCTKYSTRANRSATHMHQRGLVKTDVNYQEILTE 90 (430)
Q Consensus 57 ~~~~~~~~~gdt~~~i~~~~lv~~~~~~~~il~~ 90 (430)
=+.+|++++|||+|+|+.+.--..++|.++.+..
T Consensus 187 ~g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lA 220 (755)
T COG3170 187 PGDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLA 220 (755)
T ss_pred CCcccccCCcchHHHHHHhhcCcccccHHHHHHH
Confidence 3667999999999999998554478887776544
No 133
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=28.73 E-value=94 Score=29.87 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEeccc
Q 014108 224 DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (430)
Q Consensus 224 ~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (430)
+|++.+.+..++++|++... ..+-+ | .+|+..+..+||++.||.|-
T Consensus 181 n~~e~~~l~~~i~~i~~~~g-----------~till-I--------------EHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 181 NPEETEELAELIRELRDRGG-----------VTILL-I--------------EHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred CHHHHHHHHHHHHHHHhcCC-----------cEEEE-E--------------EeccHHHhhhccEEEeccCC
Confidence 78888899999999988543 22211 1 37899999999999999984
No 134
>PLN02877 alpha-amylase/limit dextrinase
Probab=28.42 E-value=1.5e+02 Score=34.15 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014108 186 KKLRDKAIDLILTECKEMEYDGIVLES 212 (430)
Q Consensus 186 ~~~R~~fi~~iv~~l~~~gfDGIdiD~ 212 (430)
+..|+-+++++.-++++|++||.-+|.
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDl 560 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDL 560 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 667899999999999999999999994
No 135
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=27.24 E-value=1.5e+02 Score=28.23 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014108 184 RKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (430)
Q Consensus 184 ~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~ 244 (430)
.+++.|+.+++ ++.+..++++||+-||. ...+ .+ .|+++++++++.
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~------~~~~-~~-------~~~~~~~~~~~~ 187 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDA------AKHI-PK-------EFWKEFRDEVKE 187 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETT------GGGS-SH-------HHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEcc------cccc-ch-------hhHHHHhhhhhh
Confidence 56788888888 77777778899999993 2222 22 466777777664
No 136
>PRK10785 maltodextrin glucosidase; Provisional
Probab=26.50 E-value=95 Score=33.82 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=35.7
Q ss_pred CCHHHHHHHHH---HHHH-HHHh-cCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014108 184 RKKKLRDKAID---LILT-ECKE-MEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (430)
Q Consensus 184 ~~~~~R~~fi~---~iv~-~l~~-~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~ 245 (430)
.+++.|+.+++ +++. ++++ +|.||.-||.= ..+........-..|++++++++++.
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva------~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVV------HMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecH------hHhccccCccccHHHHHHHHHHHHhh
Confidence 46889999986 3444 6665 89999999931 11100000111346999999999764
No 137
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=26.38 E-value=3.7e+02 Score=27.45 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=53.8
Q ss_pred CCCcEEEEEEEEEeeCCceeeecCCCCCChHHHHHHHhCCCcEEeEEeec-CCc----hhhcC-----CHHHHHHHHHHH
Q 014108 127 SKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLE-AFP----KELLR-----KKKLRDKAIDLI 196 (430)
Q Consensus 127 ~klT~vsp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~p~v~~~-~~~----~~~l~-----~~~~R~~fi~~i 196 (430)
..+--+.|.+..-.+.|+-+ .|-.|.....+.|.+..|.+... .++ ..++- .+..++.+++.+
T Consensus 53 ~~lvaa~P~YlK~hS~GEyv-------FD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~~ 125 (370)
T PF04339_consen 53 GRLVAAAPLYLKSHSYGEYV-------FDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQAL 125 (370)
T ss_pred CEEEEEeeeeeecccCccee-------hhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHHH
Confidence 56666778777766777632 27889998877665555544322 222 23332 245688999999
Q ss_pred HHHHHhcCCCeEEec
Q 014108 197 LTECKEMEYDGIVLE 211 (430)
Q Consensus 197 v~~l~~~gfDGIdiD 211 (430)
.+++++.|+.++.+-
T Consensus 126 ~~~a~~~~~Ss~h~l 140 (370)
T PF04339_consen 126 EQLAEENGLSSWHIL 140 (370)
T ss_pred HHHHHHcCCCcceee
Confidence 999999999999986
No 138
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=26.19 E-value=2.5e+02 Score=30.54 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHh--cCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCC
Q 014108 190 DKAIDLILTECKE--MEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSE 267 (430)
Q Consensus 190 ~~fi~~iv~~l~~--~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~ 267 (430)
+-|-.++-.+++. +|-.||-+ +.+.+.++......++++....+.....+.+ ....+.+-+--+
T Consensus 368 ~~f~~QlrAilra~~~G~~~Im~---------PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~mIE~p--- 433 (575)
T PRK11177 368 EILHDQLRAILRASAFGKLRIMF---------PMIISVEEVRELKAEIEILKQELRDEGKAFD--ESIEIGVMVETP--- 433 (575)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE---------cCCCCHHHHHHHHHHHHHHHHHHHHhccccC--CCcEEEEEEeCH---
Confidence 4455555555544 45566654 4455677777778888887777754322111 123333333211
Q ss_pred CCCCCCCCccCHHHHhccccEEEEecccCCC
Q 014108 268 KFQPHDFGPVDLQSLSDAVDGFSLMTYDFSG 298 (430)
Q Consensus 268 ~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~ 298 (430)
-.....++|++.||+|++=|.|...
T Consensus 434 ------~a~~~~d~i~~~vDf~sIGtnDL~q 458 (575)
T PRK11177 434 ------AAAVIARHLAKEVDFFSIGTNDLTQ 458 (575)
T ss_pred ------HHHHhHHHHHhhCCEEEECcHHHHH
Confidence 1246788999999999999999764
No 139
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=26.09 E-value=59 Score=33.49 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCeEEeccccccccCCCC-CCHHHHHHHHHHHHHHHH
Q 014108 192 AIDLILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGN 240 (430)
Q Consensus 192 fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~-~~~~d~~~~~~fl~eLr~ 240 (430)
.+++-++.+|..|.|||.+|+| |+.-|.. ...=|...|.++.+-+|+
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvW--WGiVE~~~p~~ydWs~Y~~l~~~vr~ 64 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVW--WGIVEGEGPQQYDWSGYRELFEMVRD 64 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE--HHHHTGSSTTB---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEeE--eeeeccCCCCccCcHHHHHHHHHHHH
Confidence 3444556788999999999998 2222221 122366677777777766
No 140
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=25.01 E-value=4.9e+02 Score=24.56 Aligned_cols=98 Identities=8% Similarity=0.037 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCC
Q 014108 190 DKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKF 269 (430)
Q Consensus 190 ~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~ 269 (430)
+.+++.+..++++++.+=|.||-...+.. ........+..+..+++.|+.-..+ .+..+.++.........
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~-~~~~~~~~~~~~~~~~~~L~~la~~--------~~vtvll~sq~~~~~~~ 196 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVS-DERASGDERKALDEIMTKLRGFATE--------HGIHITLVSHLRRPDGD 196 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHH--------hCCEEEEEecccCccCC
Confidence 45666666777889999999993221110 0000122333455677777665444 24444444443221110
Q ss_pred -------CCCCCCccCHHHHhccccEEEEecccC
Q 014108 270 -------QPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 270 -------~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
.+....-..-..+...+|.+.+|.++-
T Consensus 197 ~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~ 230 (271)
T cd01122 197 KTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQ 230 (271)
T ss_pred CccccCCCceEEeccCcHhHhhhccEEEEEEecC
Confidence 000101112236778899999998764
No 141
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=24.97 E-value=3.2e+02 Score=26.08 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=39.2
Q ss_pred CChHHHHHHHh-CCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014108 154 ADAGWLLELRK-GDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 154 ~d~~~l~~~~~-~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
+.-+.++++.+ .++.++|||-=.+ ..++=+....+.+.+. +..+++.|++||++=
T Consensus 38 PSyG~~k~a~~~~~ipv~~MIRPRg--GdFvY~~~E~~iM~~D-I~~~~~lG~~GVV~G 93 (241)
T COG3142 38 PSYGVIKEAVELSKIPVYVMIRPRG--GDFVYSDDELEIMLED-IRLARELGVQGVVLG 93 (241)
T ss_pred CCHHHHHHHHhhcCCceEEEEecCC--CCcccChHHHHHHHHH-HHHHHHcCCCcEEEe
Confidence 35778888877 7888998874322 3455555566666665 457889999999985
No 142
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=24.25 E-value=1.8e+02 Score=30.59 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014108 184 RKKKLRDKAIDLILTECKEMEYDGIVLES 212 (430)
Q Consensus 184 ~~~~~R~~fi~~iv~~l~~~gfDGIdiD~ 212 (430)
.+|+.|+.+++.+.-+++++|+||+-||.
T Consensus 206 ~np~V~~~l~~~~~~w~~~~giDGfRlDa 234 (479)
T PRK09441 206 RHPEVREELKYWAKWYMETTGFDGFRLDA 234 (479)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEhh
Confidence 57889999998766666679999999994
No 143
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=24.13 E-value=3.3e+02 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++.. ..+++-|||||+|.
T Consensus 549 ~i~~f~~aA-~~a~~aGfDgveih 571 (765)
T PRK08255 549 VRDDFVAAA-RRAAEAGFDWLELH 571 (765)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEe
Confidence 345566544 34566899999997
No 144
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=24.08 E-value=1.4e+02 Score=31.91 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCC---CCHHHHHHHHHHHHHHHHHhhc
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGIL---HDPELRNMALEFIKQLGNALHS 244 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~---~~~~d~~~~~~fl~eLr~~L~~ 244 (430)
..+++.|+.+++.+..+++ +|+||+-+|.=.....-... ..|.. ..|++++++.+++
T Consensus 170 ~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~----~~f~~~~~~~v~~ 229 (539)
T TIGR02456 170 YDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPET----HEFLKRLRKMVDR 229 (539)
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchH----HHHHHHHHHHHHH
Confidence 3578889998887777775 89999999931110000000 01222 3588888888875
No 145
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=23.64 E-value=1e+02 Score=24.08 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCCCHHHHHHHHHHHHHH
Q 014108 182 LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQL 238 (430)
Q Consensus 182 ~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~~~~d~~~~~~fl~eL 238 (430)
-+-++..|..+++.+.++-..-+.|++..|+ ++.+.+|.-+. .-.|+.+|
T Consensus 14 hlLt~~ER~~i~qaL~~y~~~Rnvd~Li~~v------~pVLDtPaK~~-iw~~i~~l 63 (80)
T cd07355 14 HLLTPPERYGIKKALEDYFQHRNIDTLIVDV------YPVLDTPAKQV-IWQYIYQL 63 (80)
T ss_pred HhCCHHHHHHHHHHHHHHHHhccHHHHHhhh------hhhcCCHHHHH-HHHHHHHH
Confidence 3456789999999999999999999999996 67665665543 33444443
No 146
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=22.85 E-value=3.8e+02 Score=26.80 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeccc---------ccc-----ccCCCCCCHHHHHHHH-HHHHHHHHHhhcccccccCCc
Q 014108 189 RDKAIDLILTECKEMEYDGIVLESW---------STW-----TAYGILHDPELRNMAL-EFIKQLGNALHSVNSVRNRKQ 253 (430)
Q Consensus 189 R~~fi~~iv~~l~~~gfDGIdiD~W---------~~~-----~~~e~~~~~~d~~~~~-~fl~eLr~~L~~~~~~~~~~~ 253 (430)
.+.|++.. ..+++-|||||.|..= ++. ..|++ +.+.|-.|. +.|+++|+++..
T Consensus 148 i~~f~~AA-~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGG--s~ENR~Rf~~Eii~aIr~~vg~--------- 215 (341)
T PF00724_consen 148 IEDFAQAA-RRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGG--SLENRARFLLEIIEAIREAVGP--------- 215 (341)
T ss_dssp HHHHHHHH-HHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSS--SHHHHHHHHHHHHHHHHHHHTG---------
T ss_pred HHHHHHHH-HHHHHhccCeEeecccchhhhhheeeeccCCCchhhhh--hhchhhHHHHHHHHHHHHHhcC---------
Confidence 44555443 3456689999999721 110 11222 456665543 577777777764
Q ss_pred ceEEEEEECCC
Q 014108 254 HLQLVYVIGPP 264 (430)
Q Consensus 254 ~~~lsvavpp~ 264 (430)
.+.|.+-+.+.
T Consensus 216 d~~v~~Rls~~ 226 (341)
T PF00724_consen 216 DFPVGVRLSPD 226 (341)
T ss_dssp GGEEEEEEETT
T ss_pred CceEEEEEeee
Confidence 56677777764
No 147
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=22.78 E-value=1.6e+02 Score=32.34 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=55.5
Q ss_pred hHHHHHHHhCCCcEEeEEeecCC-----------------------------chh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014108 156 AGWLLELRKGDALVLPRVVLEAF-----------------------------PKE--LLRKKKLRDKAIDLILTECKEME 204 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~-----------------------------~~~--~l~~~~~R~~fi~~iv~~l~~~g 204 (430)
+.+|.++|+.|+-|+.=++-+.+ +.. .....+.|+=|++++.-.+.+|.
T Consensus 217 k~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yH 296 (628)
T COG0296 217 KALVDAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYH 296 (628)
T ss_pred HHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhC
Confidence 55788888888877744443221 111 22357899999999999999999
Q ss_pred CCeEEeccccccc--cCC-----CCCC-HHH--HHHHHHHHHHHHHHhhcc
Q 014108 205 YDGIVLESWSTWT--AYG-----ILHD-PEL--RNMALEFIKQLGNALHSV 245 (430)
Q Consensus 205 fDGIdiD~W~~~~--~~e-----~~~~-~~d--~~~~~~fl~eLr~~L~~~ 245 (430)
+||+-+|.=..+. .+. ...+ ... .-.-++|++++.+.++..
T Consensus 297 iDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~ 347 (628)
T COG0296 297 IDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEE 347 (628)
T ss_pred CcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhccc
Confidence 9999999322110 000 0000 011 223467888888888764
No 148
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=22.61 E-value=76 Score=24.68 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=18.4
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHH
Q 014108 213 WSTWTAYGILHDPELRNMALEFIKQLGNA 241 (430)
Q Consensus 213 W~~~~~~e~~~~~~d~~~~~~fl~eLr~~ 241 (430)
|+.|++.-+.....-+..|+.||.||...
T Consensus 56 ~eAW~~LKGksqedA~qeYialVeeLkak 84 (87)
T COG4281 56 YEAWAGLKGKSQEDARQEYIALVEELKAK 84 (87)
T ss_pred HHHHhhccCccHHHHHHHHHHHHHHHHhh
Confidence 55554433332344567799999999865
No 149
>PRK13840 sucrose phosphorylase; Provisional
Probab=21.98 E-value=2e+02 Score=30.72 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCeEEecc----ccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014108 183 LRKKKLRDKAIDLILTECKEMEYDGIVLES----WSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (430)
Q Consensus 183 l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~----W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~ 244 (430)
..+|+.|+.+.+. +.+..+.|.||+-||. |+..+. .....|+. -.|++++|+.++.
T Consensus 166 ~~NP~V~~~i~~i-l~fwl~~GVDgfRLDAv~~l~K~~gt-~c~~~pe~----~~~l~~lr~~~~~ 225 (495)
T PRK13840 166 VHSAAGWEYLMSI-LDRFAASHVTLIRLDAAGYAIKKAGT-SCFMIPET----FEFIDRLAKEARA 225 (495)
T ss_pred CCCHHHHHHHHHH-HHHHHHCCCCEEEEechhhhhcCCCC-CcCCChHH----HHHHHHHHHHhhh
Confidence 5789888888764 5666678999999993 211000 00001333 3488888888865
No 150
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=21.92 E-value=4.9e+02 Score=25.79 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=29.7
Q ss_pred HHHhcCCCeEEecccccc---ccCCCC-CCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECC
Q 014108 199 ECKEMEYDGIVLESWSTW---TAYGIL-HDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP 263 (430)
Q Consensus 199 ~l~~~gfDGIdiD~W~~~---~~~e~~-~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp 263 (430)
.+.+.|||||||.+=-+- ..++.. .-..+.+...++++++++++.. ++-|++-+..
T Consensus 83 ~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~---------~~pVsvKiR~ 142 (312)
T PRK10550 83 RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPA---------HLPVTVKVRL 142 (312)
T ss_pred HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCC---------CcceEEEEEC
Confidence 456679999999831000 000000 0012344466677777777642 3567777655
No 151
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=21.77 E-value=1.3e+02 Score=23.66 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHhcCCCeEEeccccccccCCC--------CCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCC
Q 014108 200 CKEMEYDGIVLESWSTWTAYGI--------LHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQP 271 (430)
Q Consensus 200 l~~~gfDGIdiD~W~~~~~~e~--------~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~ 271 (430)
+.+++.|.-.+- |+-+-..+. .......+.+..+|+++.+.+++.. ..-.|++..-.
T Consensus 2 v~~~~~~~~Il~-Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d------P~~pvt~g~~~-------- 66 (88)
T PF12876_consen 2 VTRFGYDPRILA-WDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD------PSQPVTSGFWG-------- 66 (88)
T ss_dssp HHHTT-GGGEEE-EESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-------TTS-EE--B----------
T ss_pred chhhcCCCCEEE-EEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC------CCCcEEeeccc--------
Confidence 566777776664 653311111 0112245778999999999999863 23334433211
Q ss_pred CCCCccCHHHHh-ccccEEEEecc
Q 014108 272 HDFGPVDLQSLS-DAVDGFSLMTY 294 (430)
Q Consensus 272 ~~~~~~d~~~l~-~~vD~v~lMtY 294 (430)
.....+..+. +.+|++..-.|
T Consensus 67 --~~~~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 67 --GDWEDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp --S-TTHHHHS--TT-SSEEB-EE
T ss_pred --CCHHHHHHhchhcCCEEeeecC
Confidence 0123366666 88899887655
No 152
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.61 E-value=1.5e+02 Score=27.90 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCeEEec
Q 014108 193 IDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD 211 (430)
+..+++.+++.|||||++.
T Consensus 16 l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 5667788899999999996
No 153
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=21.59 E-value=5.7e+02 Score=24.72 Aligned_cols=125 Identities=17% Similarity=0.326 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCeEEe-ccccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCC
Q 014108 194 DLILTECKEMEYDGIVL-ESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPH 272 (430)
Q Consensus 194 ~~iv~~l~~~gfDGIdi-D~W~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~ 272 (430)
+..++.|++-|+||+-| |+ ..++.+ ++++.+.+ .++.++.-++|.++
T Consensus 105 e~F~~~~~~aGvdGlIipDL-----------P~ee~~-------~~~~~~~~--------~gl~~I~lv~p~t~------ 152 (259)
T PF00290_consen 105 ERFFKEAKEAGVDGLIIPDL-----------PPEESE-------ELREAAKK--------HGLDLIPLVAPTTP------ 152 (259)
T ss_dssp HHHHHHHHHHTEEEEEETTS-----------BGGGHH-------HHHHHHHH--------TT-EEEEEEETTS-------
T ss_pred HHHHHHHHHcCCCEEEEcCC-----------ChHHHH-------HHHHHHHH--------cCCeEEEEECCCCC------
Confidence 34455688889999998 41 234443 44555554 46777777777543
Q ss_pred CCCccCHHHHhccc-cEEEEecccCCCCCCCCCCCChh-hHHHHHHHHhcCCCCCCCCCCCcEEEeeccccccc--ccCC
Q 014108 273 DFGPVDLQSLSDAV-DGFSLMTYDFSGPHNPGPNAPLK-WISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDF--VLSE 348 (430)
Q Consensus 273 ~~~~~d~~~l~~~v-D~v~lMtYD~~~~~~pgp~APl~-~v~~~v~~~~~~~~~~~~ip~~KivlGipfYG~~w--~~~~ 348 (430)
...++.+++.. .|+.++++ .+.+|...+++ -+.+.++.+-+ ...-.+++|+.--...= ....
T Consensus 153 ---~~Ri~~i~~~a~gFiY~vs~----~GvTG~~~~~~~~l~~~i~~ik~-------~~~~Pv~vGFGI~~~e~~~~~~~ 218 (259)
T PF00290_consen 153 ---EERIKKIAKQASGFIYLVSR----MGVTGSRTELPDELKEFIKRIKK-------HTDLPVAVGFGISTPEQAKKLAA 218 (259)
T ss_dssp ---HHHHHHHHHH-SSEEEEESS----SSSSSTTSSCHHHHHHHHHHHHH-------TTSS-EEEESSS-SHHHHHHHHT
T ss_pred ---HHHHHHHHHhCCcEEEeecc----CCCCCCcccchHHHHHHHHHHHh-------hcCcceEEecCCCCHHHHHHHHc
Confidence 24567777665 55555664 24566655554 46777777754 22556777754332210 0001
Q ss_pred CC-cccCHHHHHHHHHh
Q 014108 349 GG-GAITGREYLNLLQK 364 (430)
Q Consensus 349 g~-~~i~~~~~~~l~~~ 364 (430)
++ +.|.++.+++++.+
T Consensus 219 ~aDGvIVGSa~v~~i~~ 235 (259)
T PF00290_consen 219 GADGVIVGSAFVKIIEE 235 (259)
T ss_dssp TSSEEEESHHHHHHHHH
T ss_pred cCCEEEECHHHHHHHHH
Confidence 11 35667777777665
No 154
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.45 E-value=4e+02 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEec
Q 014108 188 LRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 188 ~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
..+.|++.. ..+++-|||||+|.
T Consensus 148 ii~~f~~AA-~ra~~AGfDgVEih 170 (382)
T cd02931 148 FVGKFGESA-VIAKEAGFDGVEIH 170 (382)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEe
Confidence 455666643 45566899999998
No 155
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=21.33 E-value=7e+02 Score=24.00 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=39.1
Q ss_pred CChHHHHHHHh-CCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014108 154 ADAGWLLELRK-GDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 154 ~d~~~l~~~~~-~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD 211 (430)
+..+.++.+++ -++.|.+||-- -...+.=++...+.+... +..+++.|.||+++=
T Consensus 38 PS~g~i~~~~~~~~ipv~vMIRP--R~gdF~Ys~~E~~~M~~d-i~~~~~~GadGvV~G 93 (248)
T PRK11572 38 PSLGVLKSVRERVTIPVHPIIRP--RGGDFCYSDGEFAAMLED-IATVRELGFPGLVTG 93 (248)
T ss_pred CCHHHHHHHHHhcCCCeEEEEec--CCCCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEe
Confidence 46788888877 46777766532 223566666777777777 567788999999985
No 156
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.23 E-value=1.4e+02 Score=29.13 Aligned_cols=57 Identities=21% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcC--CCeEEecc-c----------cccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEE
Q 014108 193 IDLILTECKEME--YDGIVLES-W----------STWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVY 259 (430)
Q Consensus 193 i~~iv~~l~~~g--fDGIdiD~-W----------~~~~~~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsv 259 (430)
+.++++-+++++ +|+|.||+ | ..+..|.. +++.-.+...|+++|++ +++.+++
T Consensus 27 v~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~--d~~~FPdp~~mi~~Lh~------------~G~k~v~ 92 (292)
T cd06595 27 YLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSW--NRKLFPDPEKLLQDLHD------------RGLKVTL 92 (292)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEE--ChhcCCCHHHHHHHHHH------------CCCEEEE
Q ss_pred EECC
Q 014108 260 VIGP 263 (430)
Q Consensus 260 avpp 263 (430)
-+-|
T Consensus 93 ~v~P 96 (292)
T cd06595 93 NLHP 96 (292)
T ss_pred EeCC
No 157
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=21.17 E-value=5.2e+02 Score=22.99 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=67.4
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEeccccccccCCCCC-----CH----H
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILH-----DP----E 226 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~W~~~~~~e~~~-----~~----~ 226 (430)
...++++++.|+.|+ ..++... +-... ..+...||=|.+. ||.+. .. .
T Consensus 43 ~~nl~~L~~~g~~V~--~~VDat~--l~~~~------------~~~~~~FDrIiFN-------FPH~G~~~~~~~~~i~~ 99 (166)
T PF10354_consen 43 EENLEELRELGVTVL--HGVDATK--LHKHF------------RLKNQRFDRIIFN-------FPHVGGGSEDGKRNIRL 99 (166)
T ss_pred HHHHHHHhhcCCccc--cCCCCCc--ccccc------------cccCCcCCEEEEe-------CCCCCCCccchhHHHHH
Confidence 356777777777777 3344322 11111 3455679999887 66542 01 2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccCCCCCCCC
Q 014108 227 LRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPG 303 (430)
Q Consensus 227 d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pg 303 (430)
.++-+..|++..+.-|++. | .+.|++--. + .|...++.++++...++.+...+|.....||
T Consensus 100 nr~Ll~~Ff~Sa~~~L~~~--------G-~IhVTl~~~-----~--py~~W~i~~lA~~~gl~l~~~~~F~~~~ypg 160 (166)
T PF10354_consen 100 NRELLRGFFKSASQLLKPD--------G-EIHVTLKDG-----Q--PYDSWNIEELAAEAGLVLVRKVPFDPSDYPG 160 (166)
T ss_pred HHHHHHHHHHHHHHhcCCC--------C-EEEEEeCCC-----C--CCccccHHHHHHhcCCEEEEEecCCHHHCCC
Confidence 3455677888888888762 3 233444221 1 1456789999999999999999887654554
No 158
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.90 E-value=1.2e+02 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEec
Q 014108 193 IDLILTECKEMEYDGIVLE 211 (430)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD 211 (430)
....++.+++.|||||.|+
T Consensus 12 l~~~l~~a~~~G~d~vEl~ 30 (279)
T cd00019 12 LENALKRAKEIGFDTVAMF 30 (279)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 3566788999999999886
No 159
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.53 E-value=2.2e+02 Score=27.26 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=35.6
Q ss_pred hHHHHHHHhCCCcEEeEEeecCCchhhcCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014108 156 AGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (430)
Q Consensus 156 ~~~l~~~~~~~~kv~p~v~~~~~~~~~l~~~~~R~~fi~~iv~~l~~~gfDGIdiD~ 212 (430)
+++++++|+.|+|+++.+ +|..|+-+.+.+.++..+.|+||+=+|.
T Consensus 69 ~~~i~~l~~~g~~~~~~~-----------~P~v~~w~~~~~~~~~~~~Gvdg~w~D~ 114 (265)
T cd06589 69 KSMIDELHDNGVKLVLWI-----------DPYIREWWAEVVKKLLVSLGVDGFWTDM 114 (265)
T ss_pred HHHHHHHHHCCCEEEEEe-----------ChhHHHHHHHHHHHhhccCCCCEEeccC
Confidence 678999999899998543 2222777777777777889999999993
No 160
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=20.39 E-value=1.9e+02 Score=28.54 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEECCCCCCCCCCCCCCccCHHHHhccccEEEEecccC
Q 014108 219 YGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (430)
Q Consensus 219 ~e~~~~~~d~~~~~~fl~eLr~~L~~~~~~~~~~~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (430)
++.+.+.++......++++.++.|.+.+......-.+-+.+-+|. ...-...+++.+|||++=|=|.
T Consensus 142 ~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPs-----------aal~~~~~~~~~DF~SIGtNDL 208 (293)
T PF02896_consen 142 FPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPS-----------AALMADEFAKEVDFFSIGTNDL 208 (293)
T ss_dssp ESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHH-----------HHHTHHHHHTTSSEEEEEHHHH
T ss_pred ecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhH-----------HHHHHHHHHHHCCEEEEChhHH
Confidence 676667788788888999998888754222221223334444443 2467789999999999987774
Done!