BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014109
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 156/268 (58%), Gaps = 32/268 (11%)
Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168
TTRSW+F+G + +++ +++VG++D G+WPES SF DEG P
Sbjct: 1 TTRSWDFLGFPLTVPR-------------RSQVESNIVVGVLDTGIWPESPSFDDEGFSP 47
Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
P WKG C+T N+ CN+KIIGAR Y G G +N PRD +GHGTHT
Sbjct: 48 PPPKWKGTCETS---NNFRCNRKIIGARSYHIGRPISPGDVNG------PRDTNGHGTHT 98
Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288
AST AG V A+ +G GTA GG PLAR+A YK CW + C + D+LAA
Sbjct: 99 ASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCW---------NDGCSDTDILAA 148
Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348
DDAI DGV ++S+S+G P + D IAIG+ +AV+ IL + SAGN GP + ++L
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEI 376
+PWL++V A ++DR FV V +G G
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSF 236
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 129 FNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC 188
N L + GQDVIV ++D+G+WPES SF D+GM +PK WKGIC+ G FN+S+C
Sbjct: 10 LNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMC 69
Query: 189 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAE 248
N+K+IGA Y+ KG +N T + S RD DGHGTH AS AG S F G+A
Sbjct: 70 NRKLIGANYFNKGILANDPTVNITMN--SARDTDGHGTHCASITAGNFAKGVSHF-GYAP 126
Query: 249 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQ 308
GTA G AP ARLA+YK + F +D++AA+D A+ DGV ++SIS G +
Sbjct: 127 GTARGVAPRARLAVYKFSF---------NEGTFTSDLIAAMDQAVADGVDMISISYGY-R 176
Query: 309 PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPV 368
D I+I + A+ +LV+ SAGN GP SL+N +PW++ V +G DR F G +
Sbjct: 177 FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTL 236
Query: 369 VLGTGMEI 376
LG G++I
Sbjct: 237 TLGNGLKI 244
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 23/147 (15%)
Query: 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 276
+P D +GHGTH AS AG G + G G AP A+L K + +
Sbjct: 173 TPYDDNGHGTHVASIAAGT--------GAASNGKYKGMAPGAKLVGIKVL-----NGQGS 219
Query: 277 GNTCFEADMLAAIDDAIRD----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 332
G+ +D++ +D A+++ G+ V+++S+G++Q + D ++ NA ++V
Sbjct: 220 GSI---SDIINGVDWAVQNKDKYGIKVINLSLGSSQS-SDGTDSLSQAVNNAWDAGLVVV 275
Query: 333 CSAGNSGPAPSSLSN--LAPWLITVGA 357
+AGNSGP ++ + A +ITVGA
Sbjct: 276 VAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A ++ G G AP A L K A + +
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGADGRGAI 102
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
++ + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 103 SS--------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRD 363
+GNSG SS+S A + + G+ D++
Sbjct: 151 SGNSG--ASSISYPARYANAMAVGATDQN 177
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K F P+N + DR +GHGTH A T A A GG + G AP A
Sbjct: 52 KDFTGATTPINNSCTDR-----NGHGTHVAGT--------ALADGGSDQAGIYGVAPDAD 98
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAI----DDAIRDGVH-VLSISIGTNQPFAFNR 314
L YK + + + D+ AAI D A G ++S+S+G++ N
Sbjct: 99 LWAYKVLLDS--------GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA----NN 146
Query: 315 DGIAIGALNAVKHNILVACSAGNSG 339
I+ A +L+ +AGNSG
Sbjct: 147 SLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 200 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 259
K F P+N + DR +GHGTH A T A A GG + G AP A
Sbjct: 52 KDFTGATTPINNSCTDR-----NGHGTHVAGT--------ALADGGSDQAGIYGVAPDAD 98
Query: 260 LAIYKACWATPKASKAAGNTCFEADMLAAI----DDAIRDGVH-VLSISIGTNQPFAFNR 314
L YK + + + D+ AAI D A G ++S+S+G++ N
Sbjct: 99 LWAYKVLLDS--------GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA----NN 146
Query: 315 DGIAIGALNAVKHNILVACSAGNSG 339
I+ A +L+ +AGNSG
Sbjct: 147 SLISSAVNYAYSKGVLIVAAAGNSG 171
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A + N+ G AP A L K A+
Sbjct: 53 EPSTQDGNGHGTHVAGTIA--ALDNSIGVLGV--------APSAELYAVKVLGAS----- 97
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
+ + + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 98 ---GSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
+GNSG S + VGA + + G G++I+
Sbjct: 151 SGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 195 ARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGG 254
A +G + P A RS M HGTH AS + G+ E + G
Sbjct: 32 AHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQ-----------PETSVPGI 80
Query: 255 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNR 314
AP R I P S + D+ I+ A+ G H+++IS G F
Sbjct: 81 APQCRGLI------VPIFSDDR-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EA 132
Query: 315 DGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNLAPWLITVGA 357
DG A++ + N+L+ +AGN+G + P ++ VGA
Sbjct: 133 DGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 176
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 176 ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGR 235
+ TGV + + K+I KG++ + ++D P D++ HGTH A +A
Sbjct: 37 VIDTGVDYTHPDLDGKVI------KGYDFV-------DNDYDPMDLNNHGTHVAG-IAAA 82
Query: 236 RVPNASAFGGFAEGT 250
NA+ G A T
Sbjct: 83 ETNNATGIAGMAPNT 97
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 37/165 (22%)
Query: 175 GICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAG 234
GI TG+A SS + K++G ++ G + D +GHGTH A TVA
Sbjct: 29 GIIDTGIA--SSHTDLKVVGGASFVSG-------------ESYNTDGNGHGTHVAGTVA- 72
Query: 235 RRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294
+ N + G A +++Y K ++G+ + A +++ I+ A +
Sbjct: 73 -ALDNTTGVLGVAP----------NVSLYAI-----KVLNSSGSGSYSA-IVSGIEWATQ 115
Query: 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSG 339
+G+ V+++S+G + + A I+V +AGNSG
Sbjct: 116 NGLDVINMSLGGPSGSTALKQAVD----KAYASGIVVVAAAGNSG 156
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 195 ARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGG 254
A +G + P A RS M HGTH AS + G+ E + G
Sbjct: 41 AHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQ-----------PETSVPGI 89
Query: 255 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNR 314
AP R I P S + D+ I+ A+ G H+++IS G F
Sbjct: 90 APQCRGLI------VPIFSDDR-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EA 141
Query: 315 DGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNLAPWLITVGA 357
DG A++ + N+L+ +AGN+G + P ++ VGA
Sbjct: 142 DGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 185
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 37/176 (21%)
Query: 203 EQLYGPLNATED----DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
E++ G +N T D + + D +GHGTH A TVA + G AP A
Sbjct: 61 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSG----------VVGVAPKA 110
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLA-AIDDAIR------DGVHVLSISIGTNQPFA 311
L I KA +G+ E +A AI A+ + + ++++S+G
Sbjct: 111 DLFIIKAL---------SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSE 161
Query: 312 FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDF 364
D + AV +N+ V C+AGN G + A + + G++D D
Sbjct: 162 ELHDAVKY----AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 213
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 195 ARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGG 254
A +G + P A RS M HGTH AS + G+ E + G
Sbjct: 22 AHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQ-----------PETSVPGI 70
Query: 255 APLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNR 314
AP R I P S + D+ I+ A+ G H+++IS G F
Sbjct: 71 APQCRGLI------VPIFSDDR-RRITQLDLARGIERAVNAGAHIINISGGELTDFG-EA 122
Query: 315 DGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNLAPWLITVGA 357
DG A++ + N+L+ +AGN+G + P ++ VGA
Sbjct: 123 DGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 166
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 37/176 (21%)
Query: 203 EQLYGPLNATED----DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 258
E++ G +N T D + + D +GHGTH A TVA + G AP A
Sbjct: 43 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSG----------VVGVAPKA 92
Query: 259 RLAIYKACWATPKASKAAGNTCFEADMLA-AIDDAIR------DGVHVLSISIGTNQPFA 311
L I KA +G+ E +A AI A+ + + ++++S+G
Sbjct: 93 DLFIIKAL---------SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSE 143
Query: 312 FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDF 364
D + AV +N+ V C+AGN G + A + + G++D D
Sbjct: 144 ELHDAVKY----AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDL 195
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 26/91 (28%)
Query: 156 PESKSFSDEGMGP----VPKSWK---------GICQTGVAFNSSLCNKKIIGARYYLKGF 202
P FS GP P++W I TGV N K++G ++
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFV--- 59
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVA 233
++D +P++ +GHGTH A A
Sbjct: 60 ----------DNDSTPQNGNGHGTHCAGIAA 80
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 26/91 (28%)
Query: 156 PESKSFSDEGMGP----VPKSWK---------GICQTGVAFNSSLCNKKIIGARYYLKGF 202
P FS GP P++W I TGV N K++G ++
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFV--- 59
Query: 203 EQLYGPLNATEDDRSPRDMDGHGTHTASTVA 233
++D +P++ +GHGTH A A
Sbjct: 60 ----------DNDSTPQNGNGHGTHCAGIAA 80
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 142 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 199
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 200 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 251
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 252 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A + N+ G AP A L K A+ +
Sbjct: 53 EPSTQDGNGHGTHVAGTIA--ALDNSIGVLGV--------APSAELYAVKVLGASGSGAI 102
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
++ + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 103 SS--------IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSG 339
+GN G
Sbjct: 151 SGNEG 155
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGAS----- 97
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
+ + + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 98 ---GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
+GNSG S + VGA + + G G++I+
Sbjct: 151 SGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D A D V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDPDA-------DAAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN----NSIGVL------GVAPSAELYAVKVLGAS----- 97
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
+ + + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 98 ---GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
+GNSG S + VGA + + G G++I+
Sbjct: 151 SGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
D S D GHGTH VAG + N GG G G AP A L YK
Sbjct: 62 DNSCTDRQGHGTH----VAGSALAN----GGTGSGV-YGVAPEADLWAYKVL-------- 104
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH----NIL 330
+ + D+ AI A D L+ + N + + I NAV + +L
Sbjct: 105 GDDGSGYADDIAEAIRHA-GDQATALNTKVVINMSLGSSGESSLI--TNAVDYAYDKGVL 161
Query: 331 VACSAGNSGPAPSSL 345
+ +AGNSGP P S+
Sbjct: 162 IIAAAGNSGPKPGSI 176
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVLGAS----- 97
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
+ + + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 98 ---GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
+GNSG S + VGA + + G G++I+
Sbjct: 151 SGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVLGAS----- 97
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
+ + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 98 ---GGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
+GNSG S + VGA + + G G++I+
Sbjct: 151 SGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 274
+ S +D +GHGTH A T+A ++ G G AP A L K A+
Sbjct: 53 EPSTQDGNGHGTHVAGTIAALN----NSIGVL------GVAPNAELYAVKVLGAS----- 97
Query: 275 AAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACS 334
+ + + ++ A +G+HV ++S+G+ P A + +A +LV +
Sbjct: 98 ---GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAA 150
Query: 335 AGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
+GNSG S + VGA + + G G++I+
Sbjct: 151 SGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 65 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 123 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 145 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DDA V+S+S+G ++ D I I A NA
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DDA---AAEVISMSLGGPADDSYLYDMI-IQAYNA 254
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 67 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 124
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 125 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 173
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 174 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 76 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQ 133
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|2AIF|A Chain A, Crystal Structure Of High Mobility Like Protein, Nhp2,
Putative From Cryptosporidium Parvum
Length = 135
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 271 KASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNIL 330
+A+KA E +LAA + + +H+ + N P+ F R +A+G V ++
Sbjct: 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVI 107
Query: 331 VACSAGNSGPAPSS 344
A G + SS
Sbjct: 108 AAAITSKDGSSLSS 121
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT-----------ASGGAPLARLAIYK 264
R D +GHGTH T+A N G A G SG + I +
Sbjct: 76 RDCADQNGHGTHVIGTIAALN--NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 133
Query: 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 324
A + G+ D DD D V+S+S+G ++ D I + A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 325 VKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 357
I++ ++GN G S P +I VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 217 SPRDMDGHGTHTASTVAGR 235
S RD +GHGTH A TV R
Sbjct: 62 SSRDGNGHGTHCAGTVGSR 80
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 217 SPRDMDGHGTHTASTVAGR 235
S RD +GHGTH A TV R
Sbjct: 62 SSRDGNGHGTHCAGTVGSR 80
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 267
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 68 SYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYS 106
+Y+ ++ GF +LT E LSE+ E + + EK +
Sbjct: 60 TYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLT 98
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 217 SPRDMDGHGTHTASTVAGR 235
S RD +GHGTH A TV R
Sbjct: 62 SSRDGNGHGTHCAGTVGSR 80
>pdb|3TNF|B Chain B, Lida From Legionella In Complex With Active Rab8a
Length = 384
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 68 SYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYS 106
+Y+ ++ GF +LT E LSE+ E + + EK +
Sbjct: 43 TYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLT 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,514,456
Number of Sequences: 62578
Number of extensions: 524661
Number of successful extensions: 1375
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 89
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)