Query 014109
Match_columns 430
No_of_seqs 305 out of 2555
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1153 Subtilisin-related pro 100.0 1.8E-40 3.9E-45 324.1 18.3 292 17-402 74-402 (501)
2 cd04852 Peptidases_S8_3 Peptid 100.0 5.5E-39 1.2E-43 317.0 23.6 235 105-359 1-235 (307)
3 PTZ00262 subtilisin-like prote 100.0 4.1E-36 8.8E-41 312.4 17.3 216 134-401 305-542 (639)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 6.7E-36 1.5E-40 287.3 15.2 189 136-400 1-197 (255)
5 cd07476 Peptidases_S8_thiazoli 100.0 9.9E-35 2.1E-39 280.8 18.0 194 135-399 2-195 (267)
6 cd07497 Peptidases_S8_14 Pepti 100.0 1.4E-34 3E-39 285.0 15.6 226 142-400 1-246 (311)
7 cd07483 Peptidases_S8_Subtilis 100.0 9.6E-34 2.1E-38 277.5 18.7 218 143-399 1-240 (291)
8 cd07485 Peptidases_S8_Fervidol 100.0 2E-33 4.3E-38 272.8 18.4 207 135-398 2-215 (273)
9 cd07491 Peptidases_S8_7 Peptid 100.0 1.3E-33 2.8E-38 269.9 15.3 174 142-370 2-181 (247)
10 cd07484 Peptidases_S8_Thermita 100.0 5.5E-33 1.2E-37 267.6 18.3 176 134-370 20-195 (260)
11 cd07475 Peptidases_S8_C5a_Pept 100.0 5.1E-33 1.1E-37 278.7 18.4 232 135-398 2-257 (346)
12 cd07496 Peptidases_S8_13 Pepti 100.0 9.3E-33 2E-37 269.8 17.3 147 217-401 66-223 (285)
13 cd05561 Peptidases_S8_4 Peptid 100.0 5.1E-33 1.1E-37 264.8 15.0 175 145-400 1-176 (239)
14 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.1E-32 2.3E-37 265.0 16.9 178 135-398 17-200 (255)
15 cd07487 Peptidases_S8_1 Peptid 100.0 1.5E-32 3.2E-37 264.7 17.4 199 142-400 1-205 (264)
16 cd07481 Peptidases_S8_Bacillop 100.0 2.2E-32 4.9E-37 264.2 18.0 196 142-399 1-211 (264)
17 cd07493 Peptidases_S8_9 Peptid 100.0 5.8E-32 1.3E-36 260.8 17.9 194 144-398 1-209 (261)
18 cd07489 Peptidases_S8_5 Peptid 100.0 7E-32 1.5E-36 266.9 18.4 182 134-359 4-188 (312)
19 cd07498 Peptidases_S8_15 Pepti 100.0 4.8E-32 1E-36 258.3 16.1 172 145-382 1-173 (242)
20 cd05562 Peptidases_S53_like Pe 100.0 1.7E-31 3.6E-36 259.2 16.1 192 139-398 1-198 (275)
21 cd07490 Peptidases_S8_6 Peptid 100.0 6.7E-31 1.4E-35 252.1 17.8 200 144-401 1-201 (254)
22 cd07477 Peptidases_S8_Subtilis 100.0 6E-31 1.3E-35 248.3 16.5 177 144-398 1-179 (229)
23 cd04843 Peptidases_S8_11 Pepti 100.0 4.9E-31 1.1E-35 256.2 16.1 186 134-398 6-210 (277)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 1E-30 2.2E-35 255.9 16.9 213 138-400 2-226 (293)
25 cd07482 Peptidases_S8_Lantibio 100.0 1.2E-30 2.7E-35 255.3 16.4 181 144-371 1-210 (294)
26 cd07478 Peptidases_S8_CspA-lik 100.0 1.7E-30 3.6E-35 268.4 15.8 184 140-340 1-195 (455)
27 cd07473 Peptidases_S8_Subtilis 100.0 5E-30 1.1E-34 246.7 17.7 187 143-369 2-194 (259)
28 cd04847 Peptidases_S8_Subtilis 100.0 1.1E-30 2.5E-35 255.8 13.3 204 146-402 2-225 (291)
29 cd04857 Peptidases_S8_Tripepti 100.0 9.4E-30 2E-34 256.5 19.8 165 219-399 182-353 (412)
30 cd07474 Peptidases_S8_subtilis 100.0 1.9E-29 4.1E-34 247.2 18.7 179 142-360 1-183 (295)
31 cd07480 Peptidases_S8_12 Pepti 100.0 6E-29 1.3E-33 244.3 15.2 166 138-362 3-200 (297)
32 cd04059 Peptidases_S8_Protein_ 100.0 7E-29 1.5E-33 243.5 14.9 187 134-376 30-230 (297)
33 cd07494 Peptidases_S8_10 Pepti 100.0 3.7E-28 7.9E-33 238.5 16.6 154 134-360 12-174 (298)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.2E-27 2.5E-32 225.3 16.0 157 144-365 1-157 (222)
35 cd04848 Peptidases_S8_Autotran 99.9 1.9E-27 4.1E-32 228.7 15.8 174 141-367 1-194 (267)
36 KOG4266 Subtilisin kexin isozy 99.9 1.5E-26 3.2E-31 232.8 16.2 290 23-399 49-388 (1033)
37 PF00082 Peptidase_S8: Subtila 99.9 3.7E-26 8.1E-31 221.9 11.4 179 146-373 1-186 (282)
38 cd00306 Peptidases_S8_S53 Pept 99.9 6.4E-23 1.4E-27 192.7 17.4 129 217-365 39-172 (241)
39 cd07488 Peptidases_S8_2 Peptid 99.9 6.2E-22 1.3E-26 189.1 10.5 147 218-400 33-194 (247)
40 COG1404 AprE Subtilisin-like s 99.8 4.6E-19 9.9E-24 183.8 16.8 195 134-399 131-338 (508)
41 KOG1114 Tripeptidyl peptidase 99.8 2.8E-19 6E-24 187.7 10.7 164 221-399 309-478 (1304)
42 KOG3526 Subtilisin-like propro 99.7 2.3E-16 5.1E-21 151.9 15.0 177 133-363 151-341 (629)
43 cd04056 Peptidases_S53 Peptida 99.2 6.3E-11 1.4E-15 119.7 10.6 103 251-365 83-201 (361)
44 PF05922 Inhibitor_I9: Peptida 99.0 2.3E-09 4.9E-14 84.5 7.9 77 25-107 1-81 (82)
45 KOG3525 Subtilisin-like propro 97.8 0.00011 2.3E-09 75.8 9.2 208 134-394 24-245 (431)
46 COG4934 Predicted protease [Po 96.6 0.0054 1.2E-07 69.0 8.2 94 252-357 289-395 (1174)
47 KOG1114 Tripeptidyl peptidase 83.3 0.84 1.8E-05 50.6 2.7 24 139-162 77-100 (1304)
48 PF07172 GRP: Glycine rich pro 56.3 9.1 0.0002 31.0 2.3 11 2-12 3-13 (95)
49 PF03032 Brevenin: Brevenin/es 49.4 10 0.00022 26.4 1.3 22 1-22 3-24 (46)
50 PF08194 DIM: DIM protein; In 40.6 43 0.00092 22.0 3.1 28 1-28 1-28 (36)
51 PF11777 DUF3316: Protein of u 38.1 26 0.00055 29.2 2.3 19 1-19 1-19 (114)
52 PF02402 Lysis_col: Lysis prot 38.0 14 0.00031 25.2 0.6 31 1-34 1-31 (46)
53 PRK13883 conjugal transfer pro 34.9 66 0.0014 28.4 4.4 26 1-27 1-26 (151)
54 KOG2018 Predicted dinucleotide 33.9 83 0.0018 31.3 5.3 53 285-338 179-247 (430)
55 PF08139 LPAM_1: Prokaryotic m 32.0 31 0.00067 20.7 1.3 14 2-15 8-21 (25)
56 cd00930 Cyt_c_Oxidase_VIII Cyt 29.9 51 0.0011 22.6 2.2 29 392-423 14-42 (43)
57 PRK10053 hypothetical protein; 29.0 44 0.00096 28.7 2.3 20 1-20 1-20 (130)
58 PF02285 COX8: Cytochrome oxid 28.2 53 0.0011 22.6 2.1 25 397-424 19-43 (44)
59 PRK10884 SH3 domain-containing 27.7 53 0.0012 30.5 2.8 34 1-34 1-40 (206)
60 PF08821 CGGC: CGGC domain; I 27.2 2.4E+02 0.0053 23.2 6.4 41 256-307 36-76 (107)
61 COG5567 Predicted small peripl 25.7 72 0.0016 23.0 2.5 25 1-25 1-25 (58)
62 PF10913 DUF2706: Protein of u 25.7 71 0.0015 22.7 2.4 26 1-26 1-26 (60)
63 PRK09810 entericidin A; Provis 24.4 65 0.0014 21.8 2.0 12 1-12 2-13 (41)
64 PF02601 Exonuc_VII_L: Exonucl 22.2 2.9E+02 0.0064 27.1 7.1 58 279-339 54-118 (319)
65 PF10614 CsgF: Type VIII secre 22.0 59 0.0013 28.4 1.8 21 1-21 1-21 (142)
66 PF00879 Defensin_propep: Defe 21.9 96 0.0021 22.2 2.5 19 1-19 1-19 (52)
67 PRK10949 protease 4; Provision 20.8 4E+02 0.0088 29.1 8.3 66 279-344 346-412 (618)
No 1
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=324.07 Aligned_cols=292 Identities=18% Similarity=0.266 Sum_probs=226.4
Q ss_pred hhhccCCeEEEEEeCCCCCCCcchhhhHHhHHHHHHhhcchhhhhcc--c----------------eEEEee---eeeee
Q 014109 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARA--S----------------HLYSYK---HSING 75 (430)
Q Consensus 17 ~~~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~----------------i~~~~~---~~~~g 75 (430)
......+.+|||.|++.. .......|.+++++..+....... . +...|. .++++
T Consensus 74 ~i~~~~~~~YiV~f~~~~-----~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~ 148 (501)
T KOG1153|consen 74 AIEEALPSRYIVVFKPDA-----SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRG 148 (501)
T ss_pred hhhcccccceEEEeCCCc-----cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhc
Confidence 334567899999999554 456667777777776543222100 0 222232 26788
Q ss_pred EEEEeCHHHHHHhhcCcCeEEEEecCCccccccc-----CCCccccccchhhhccccccc-cchhhhcccCCCCccEEEE
Q 014109 76 FSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQNWNHFN-MGQDLLSKARYGQDVIVGL 149 (430)
Q Consensus 76 ~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~gl~~~~~~~~~~~~-~~~~~~~~~~~G~gV~VaV 149 (430)
+...++.+.+..++++|-++.++++. .+.... .+....|+|.++.++....+. .....++ -..|+||+.+|
T Consensus 149 y~~~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv 225 (501)
T KOG1153|consen 149 YTGYFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYV 225 (501)
T ss_pred cccccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEE
Confidence 99999999999999999999999998 665543 445567899888655522111 1112333 44899999999
Q ss_pred eecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 014109 150 VDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTA 229 (430)
Q Consensus 150 IDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVA 229 (430)
+||||++.||||.++. .| |.|.. ......|++|||||||
T Consensus 226 ~DTGVni~H~dFegRa------~w-Ga~i~----------------------------------~~~~~~D~nGHGTH~A 264 (501)
T KOG1153|consen 226 LDTGVNIEHPDFEGRA------IW-GATIP----------------------------------PKDGDEDCNGHGTHVA 264 (501)
T ss_pred ecccccccccccccce------ec-ccccC----------------------------------CCCcccccCCCcceee
Confidence 9999999999998663 23 11110 0124568999999999
Q ss_pred ccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHC---------CCcEE
Q 014109 230 STVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVL 300 (430)
Q Consensus 230 Giiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~---------g~~VI 300 (430)
|+|++++ .|||.+++|+.+||++++| +++.+++++++||+++. +..|.
T Consensus 265 G~I~sKt---------------~GvAK~s~lvaVKVl~~dG--------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~ 321 (501)
T KOG1153|consen 265 GLIGSKT---------------FGVAKNSNLVAVKVLRSDG--------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVA 321 (501)
T ss_pred eeeeccc---------------cccccccceEEEEEeccCC--------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEE
Confidence 9999984 6999999999999999998 89999999999999986 57999
Q ss_pred EeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-CCCCCEEEEeccccCCCcccceEeCCCcEEEec
Q 014109 301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVS 379 (430)
Q Consensus 301 n~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~S 379 (430)
|||+|+ ...-+++.|+++|.+.||.+++||||+..++|..+ ++++++|||||++.. +.++.||
T Consensus 322 NlSlGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-----------D~iA~FS 385 (501)
T KOG1153|consen 322 NLSLGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-----------DTIAFFS 385 (501)
T ss_pred EEecCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------cchhhhc
Confidence 999999 34466788889999999999999999999988776 678999999999986 8899999
Q ss_pred ccceeeeeeeecceEEeehHHHH
Q 014109 380 NFIIILFTVQCINIVITFSFLFF 402 (430)
Q Consensus 380 n~G~~~~~~~~~d~~~~~~~~~~ 402 (430)
||| .|||++|||.-+.+
T Consensus 386 N~G------~CVdiFAPGv~IlS 402 (501)
T KOG1153|consen 386 NWG------KCVDIFAPGVNILS 402 (501)
T ss_pred Ccc------ceeeeecCchhhhh
Confidence 999 99999999976544
No 2
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-39 Score=316.95 Aligned_cols=235 Identities=54% Similarity=0.925 Sum_probs=196.2
Q ss_pred cccccCCCccccccchhhhccccccccchhhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCccc
Q 014109 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 184 (430)
Q Consensus 105 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~ 184 (430)
+++++++++.++++... |. ..+|..+.+|+||+|||||||||++||+|.+....++...|.+.|..+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA----WG-----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFN 71 (307)
T ss_pred CCccccCCHHHcCCCCC----CC-----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcC
Confidence 36788888888888866 11 0257889999999999999999999999999888888999999999998887
Q ss_pred ccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEee
Q 014109 185 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 264 (430)
Q Consensus 185 ~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~k 264 (430)
...+++|+++.++|..++..... .+...+..++.|..||||||||||||+...+.... +...+.+.||||+|+|+.+|
T Consensus 72 ~~~~~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~k 149 (307)
T cd04852 72 PFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYK 149 (307)
T ss_pred ccCcCCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEE
Confidence 78899999999999887654422 12233456778899999999999999865444433 44455678999999999999
Q ss_pred eccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC
Q 014109 265 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344 (430)
Q Consensus 265 v~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~ 344 (430)
+++..+ .+..+++++|++||++++++|||||||.... ....+.+..++..+.++|+++|+||||+|+...+
T Consensus 150 v~~~~~--------~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~ 220 (307)
T cd04852 150 VCWPDG--------GCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220 (307)
T ss_pred EecCCC--------CccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCc
Confidence 999854 7889999999999999999999999998432 4456677778888999999999999999987778
Q ss_pred CCCCCCCEEEEeccc
Q 014109 345 LSNLAPWLITVGAGS 359 (430)
Q Consensus 345 ~~~~~~~vitVgA~~ 359 (430)
.++..|++|+|||++
T Consensus 221 ~~~~~~~vi~Vga~~ 235 (307)
T cd04852 221 VPNVAPWVTTVAAST 235 (307)
T ss_pred ccCCCCCeEEEEecc
Confidence 888899999999998
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.1e-36 Score=312.38 Aligned_cols=216 Identities=17% Similarity=0.121 Sum_probs=148.5
Q ss_pred hhhc--ccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCcee--eeeEecccccccccCCC
Q 014109 134 DLLS--KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKI--IGARYYLKGFEQLYGPL 209 (430)
Q Consensus 134 ~~~~--~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki--~g~~~~~~~~~~~~~~~ 209 (430)
.+|+ .+.+|+||+|||||||||++||||.++-.... ....|+... ....|..+ ..+++|.+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Grdgi-----DdD~nG~vdd~~G~nfVd--------- 369 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRKGI-----DDDNNGNVDDEYGANFVN--------- 369 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCcccc-----ccccCCcccccccccccC---------
Confidence 4555 35689999999999999999999986521100 001111000 00000000 11233332
Q ss_pred CCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHH
Q 014109 210 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI 289 (430)
Q Consensus 210 ~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai 289 (430)
+..+|.|..||||||||||||. +++...+.||||+|+|+++|+++..+ .+..+++++||
T Consensus 370 ----~~~~P~D~~GHGTHVAGIIAA~---------gnN~~Gi~GVAP~AkLi~vKVld~~G--------~G~~sdI~~AI 428 (639)
T PTZ00262 370 ----NDGGPMDDNYHGTHVSGIISAI---------GNNNIGIVGVDKRSKLIICKALDSHK--------LGRLGDMFKCF 428 (639)
T ss_pred ----CCCCCCCCCCcchHHHHHHhcc---------ccCCCceeeeecccccceEEEecCCC--------CccHHHHHHHH
Confidence 2345688999999999999998 33334467999999999999999876 78899999999
Q ss_pred HHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCC--------------CCCC----CCCC
Q 014109 290 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS--------------SLSN----LAPW 351 (430)
Q Consensus 290 ~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--------------~~~~----~~~~ 351 (430)
+||++.|++|||||||+.. ....+..|+.+|.++|++||+||||+|.+.. .+|+ ..|+
T Consensus 429 ~yA~~~GA~VINmSlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~n 504 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRN 504 (639)
T ss_pred HHHHHCCCCEEEeccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCC
Confidence 9999999999999999832 3345677889999999999999999986421 1232 3589
Q ss_pred EEEEeccccCCCcccceEeCCCcEEEecccceeeeeeeecceEEeehHHH
Q 014109 352 LITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLF 401 (430)
Q Consensus 352 vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~~~ 401 (430)
||+|||++.+.. ..| ....+|+|| ..++|++|||..++
T Consensus 505 VIaVGAv~~d~~-~~~------s~s~~Snyg-----~~~VDIaAPG~dI~ 542 (639)
T PTZ00262 505 VITVSNLIKDKN-NQY------SLSPNSFYS-----AKYCQLAAPGTNIY 542 (639)
T ss_pred EEEEeeccCCCC-Ccc------cccccccCC-----CCcceEEeCCCCee
Confidence 999999987422 111 123456775 24567777775443
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=6.7e-36 Score=287.26 Aligned_cols=189 Identities=22% Similarity=0.237 Sum_probs=145.8
Q ss_pred hcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCC
Q 014109 136 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDD 215 (430)
Q Consensus 136 ~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 215 (430)
|+.+++|+||+|||||||||.+||+|++.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 788999999999999999999999996321 0011111 1
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHC
Q 014109 216 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 295 (430)
Q Consensus 216 ~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~ 295 (430)
....|..||||||||||+|. ++ ...||||+|+|+.+|++.+.+ ....++++++++|++++
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~---------~~---~~~GvAp~a~l~~~~v~~~~~--------~~~~~~~~~a~~~a~~~ 98 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASS---------RE---QCLGFAPDAEIYIFRVFTNNQ--------VSYTSWFLDAFNYAILT 98 (255)
T ss_pred CCCCCCCCcHHHHHHHHHcc---------CC---CceeECCCCEEEEEEeecCCC--------CchHHHHHHHHHhhhhc
Confidence 23457789999999999997 21 247999999999999998875 56788899999999999
Q ss_pred CCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC--CCCCCCCEEEEeccccCCCcccceEeCCC
Q 014109 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--LSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (430)
Q Consensus 296 g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~~~s~~g~~ 373 (430)
+++|||||||... ..+.++..++.++.++|++||+||||+|+...+ .++..++||+|||++.++.
T Consensus 99 ~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~---------- 165 (255)
T cd07479 99 KIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFDDN---------- 165 (255)
T ss_pred CCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccCCc----------
Confidence 9999999999832 234556666778889999999999999975443 4567899999999998744
Q ss_pred cEEEecccceee------eeeeecceEEeehHH
Q 014109 374 MEIIVSNFIIIL------FTVQCINIVITFSFL 400 (430)
Q Consensus 374 ~~~~~Sn~G~~~------~~~~~~d~~~~~~~~ 400 (430)
.+.|||||+.. +...++|+++||..+
T Consensus 166 -~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i 197 (255)
T cd07479 166 -IARFSSRGMTTWELPGGYGRVKPDIVTYGSGV 197 (255)
T ss_pred -cccccCCCCCcccccCCCCCcCccEEecCCCe
Confidence 45555555332 234478888888654
No 5
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=9.9e-35 Score=280.77 Aligned_cols=194 Identities=23% Similarity=0.273 Sum_probs=150.3
Q ss_pred hhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCC
Q 014109 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (430)
Q Consensus 135 ~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 214 (430)
+|..+.+|+||+|||||+|||.+||+|++..+.+. ..+. ..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~-------------~~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYA-------------AA 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCcc-------------cc
Confidence 69999999999999999999999999986422110 0000 01
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHH
Q 014109 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (430)
Q Consensus 215 ~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~ 294 (430)
.....|..+|||||||||+|+. + ..+.||||+|+|+.+|++...+. ..+.+++++|++||++
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~--------~---~~~~GvAp~a~i~~~~v~~~~~~-------~~~~~~i~~ai~~a~~ 104 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQP--------C---SSVEGIAPLCRGLNIPIFAEDRR-------GCSQLDLARAINLALE 104 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCC--------C---CCceeECcCCeEEEEEEEeCCCC-------CCCHHHHHHHHHHHHH
Confidence 1234567899999999999872 1 13579999999999999987641 3347889999999999
Q ss_pred CCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCCEEEEeccccCCCcccceEeCCCc
Q 014109 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 374 (430)
Q Consensus 295 ~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~s~~g~~~ 374 (430)
+|++|||||||...........+.+++++|.++|+++|+||||+|.....+|+..|+||+|||++.+ +.
T Consensus 105 ~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------~~ 173 (267)
T cd07476 105 QGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-----------GL 173 (267)
T ss_pred CCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------CC
Confidence 9999999999984444455667888899999999999999999998777778889999999999986 55
Q ss_pred EEEecccceeeeeeeecceEEeehH
Q 014109 375 EIIVSNFIIILFTVQCINIVITFSF 399 (430)
Q Consensus 375 ~~~~Sn~G~~~~~~~~~d~~~~~~~ 399 (430)
...|||||+.. ...|+++||..
T Consensus 174 ~~~~s~~g~~~---~~~~l~ApG~~ 195 (267)
T cd07476 174 PLKFSNWGADY---RKKGILAPGEN 195 (267)
T ss_pred eeeecCCCCCC---CCceEEecCCC
Confidence 66777777432 12355655543
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-34 Score=285.04 Aligned_cols=226 Identities=22% Similarity=0.127 Sum_probs=143.6
Q ss_pred CCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 014109 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (430)
Q Consensus 142 G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (430)
|+||+|||||||||.+||||.++... .|. ..+ . ...++....++.. .....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~--d-~~~~~~~g~d~~~------------~~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKF--D-YKAYLLPGMDKWG------------GFYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------ccc--C-cCCCccCCcCCCC------------CccCCCCCc
Confidence 79999999999999999999754210 000 000 0 0001111111111 111346789
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHH-------HHHHHHH--
Q 014109 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADM-------LAAIDDA-- 292 (430)
Q Consensus 222 ~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i-------~~ai~~a-- 292 (430)
+||||||||||+|......+..+-.....+.||||+|+|+++|++...+ ......+ ..+++|+
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~--------~~~~~~~~~g~~~~~~~~~~~~~ 127 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD--------VIYAWLWTAGFDPVDRKLSWIYT 127 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC--------cchhhhhhhccchhhhhhhhhhc
Confidence 9999999999999832111110000123468999999999999997543 2322222 2244554
Q ss_pred HHCCCcEEEeccCCCCCCC----CcccHHHHHHHHH-HcCCcEEEEecCCCCCCCCC--CCCCCCCEEEEeccccCCCcc
Q 014109 293 IRDGVHVLSISIGTNQPFA----FNRDGIAIGALNA-VKHNILVACSAGNSGPAPSS--LSNLAPWLITVGAGSLDRDFV 365 (430)
Q Consensus 293 ~~~g~~VIn~S~G~~~~~~----~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~ 365 (430)
.+++++|||||||...... ...+..+..++.+ .++|+++|+||||+|++..+ .|+.++++|+|||++..+..+
T Consensus 128 ~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~ 207 (311)
T cd07497 128 GGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP 207 (311)
T ss_pred cCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc
Confidence 3679999999999842211 1112233333332 48999999999999986544 456789999999998754433
Q ss_pred cc----eEeCCCcEEEecccceeeeeeeecceEEeehHH
Q 014109 366 GP----VVLGTGMEIIVSNFIIILFTVQCINIVITFSFL 400 (430)
Q Consensus 366 ~~----s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~~ 400 (430)
.+ .....+..+.||++||..+....+|+++||..+
T Consensus 208 ~~~~~~~~~~~~~~~~fSs~Gp~~~g~~kPdv~ApG~~i 246 (311)
T cd07497 208 FYLFGYLPGGSGDVVSWSSRGPSIAGDPKPDLAAIGAFA 246 (311)
T ss_pred hhhhccccCCCCCccccccCCCCcccCCCCceeccCcce
Confidence 22 223457789999999988888889999998653
No 7
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=9.6e-34 Score=277.46 Aligned_cols=218 Identities=21% Similarity=0.255 Sum_probs=144.4
Q ss_pred CccEEEEeecCCCCCCcCccCCCCC-CCCCCcccccccCCcccccCCCceeeeeEecccccccc----cCCCC------C
Q 014109 143 QDVIVGLVDNGVWPESKSFSDEGMG-PVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQL----YGPLN------A 211 (430)
Q Consensus 143 ~gV~VaVIDTGid~~Hpdf~~~~~~-~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~----~~~~~------~ 211 (430)
++|+|||||||||++||||+++... +.+....|....++.|.. + +.+++|...+... ..+.+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 5899999999999999999876211 111111222222222211 1 2334443321110 00000 0
Q ss_pred CCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHH
Q 014109 212 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (430)
Q Consensus 212 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~ 291 (430)
..+...+.+..+|||||||||+|.. .+..+ +.||||+++|+++|++... ....+++++|++|
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~--------~n~~g-~~GvAp~a~i~~~k~~~~g---------~~~~~~i~~Ai~~ 136 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVR--------DNGIG-IDGVADNVKIMPLRIVPNG---------DERDKDIANAIRY 136 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcC--------CCCCc-eEEECCCCEEEEEEEecCC---------CcCHHHHHHHHHH
Confidence 1122345578999999999999983 23333 6799999999999998643 5677889999999
Q ss_pred HHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CC--------CCCCCEEEEecccc
Q 014109 292 AIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LS--------NLAPWLITVGAGSL 360 (430)
Q Consensus 292 a~~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~~~vitVgA~~~ 360 (430)
|+++|++|||||||... ......+..++++|.++|+++|+||||+|.+... ++ ...+++|+|||++.
T Consensus 137 a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~ 214 (291)
T cd07483 137 AVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSK 214 (291)
T ss_pred HHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccc
Confidence 99999999999999732 2233456778889999999999999999964322 22 23589999999987
Q ss_pred CCCcccceEeCCCcEEEecccceeeeeeeecceEEeehH
Q 014109 361 DRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSF 399 (430)
Q Consensus 361 ~~~~~~~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~ 399 (430)
.... ...+.|||||+ .++|+++||..
T Consensus 215 ~~~~--------~~~~~~Sn~G~-----~~vdi~APG~~ 240 (291)
T cd07483 215 KYEN--------NLVANFSNYGK-----KNVDVFAPGER 240 (291)
T ss_pred cCCc--------ccccccCCCCC-----CceEEEeCCCC
Confidence 6321 23567888883 25677777654
No 8
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=2e-33 Score=272.84 Aligned_cols=207 Identities=22% Similarity=0.197 Sum_probs=148.1
Q ss_pred hhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCC
Q 014109 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (430)
Q Consensus 135 ~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 214 (430)
+|..+.+|+||+|+|||||||++||+|.+..... .+ ..+...+..... ....
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------------~~~~~~~~~~~~---~~~~ 53 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------------DPAVNGYNFVPN---VGDI 53 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------------ccccCCcccccc---cCCc
Confidence 6999999999999999999999999998651100 00 000000000000 0011
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHH
Q 014109 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (430)
Q Consensus 215 ~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~ 294 (430)
.....|..+|||||||||++...+..... +.. ...|+||+++|+.+|+++..+ ......++++|+|+++
T Consensus 54 ~~~~~~~~gHGT~VAgiia~~~~~~~~~g-~i~--~~~gvap~a~l~~~~v~~~~~--------~~~~~~~~~ai~~a~~ 122 (273)
T cd07485 54 DNDVSVGGGHGTHVAGTIAAVNNNGGGVG-GIA--GAGGVAPGVKIMSIQIFAGRY--------YVGDDAVAAAIVYAAD 122 (273)
T ss_pred CCCCCCCCCCHHHHHHHHHcccCCCccee-ccc--cccccCCCCEEEEEEEECCCC--------CccHHHHHHHHHHHHH
Confidence 23455688999999999999732111110 110 124599999999999999875 6788899999999999
Q ss_pred CCCcEEEeccCCCCCCCCcccHHHHHHHHHHcC-------CcEEEEecCCCCCCCCCCCCCCCCEEEEeccccCCCcccc
Q 014109 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGP 367 (430)
Q Consensus 295 ~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 367 (430)
.+++|||||||... ...+...+..+++++.++ |+++|+||||++......++..++||+|||++.+
T Consensus 123 ~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 123 NGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 99999999999833 233445566677888877 9999999999998877778889999999999987
Q ss_pred eEeCCCcEEEecccceeeeeeeecceEEeeh
Q 014109 368 VVLGTGMEIIVSNFIIILFTVQCINIVITFS 398 (430)
Q Consensus 368 s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~ 398 (430)
+..+.||||| .++|+.+||.
T Consensus 196 -----~~~~~~S~~g------~~~~i~apG~ 215 (273)
T cd07485 196 -----DNKASFSNYG------RWVDIAAPGV 215 (273)
T ss_pred -----CCcCccccCC------CceEEEeCCC
Confidence 4455666666 4555666655
No 9
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-33 Score=269.88 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=126.9
Q ss_pred CCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 014109 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (430)
Q Consensus 142 G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (430)
+++|+|||||||||.+||+|+++- ...++|...... .........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i---------------------------~~~~~~~~~~~~------~~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI---------------------------IGGKSFSPYEGD------GNKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc---------------------------ccCCCCCCCCCC------cccCCCCCCCC
Confidence 789999999999999999997541 111222211000 00111233578
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccC-ccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 014109 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKAS-KAAGNTCFEADMLAAIDDAIRDGVHVL 300 (430)
Q Consensus 222 ~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~-~~~~~~~~~~~i~~ai~~a~~~g~~VI 300 (430)
.||||||||||+ |+||+|+|+++|+++..+..+ .. .++...+++||+||+++|++||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~~~~~---~~~~~~i~~Ai~~Ai~~gadII 106 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPDSNKR---SITPQSAAKAIEAAVEKKVDII 106 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCCCccc---ccCHHHHHHHHHHHHHCCCcEE
Confidence 899999999995 679999999999998765210 00 3567889999999999999999
Q ss_pred EeccCCCCCC--CCcccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CC--CCCCCCEEEEeccccCCCcccceEe
Q 014109 301 SISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SL--SNLAPWLITVGAGSLDRDFVGPVVL 370 (430)
Q Consensus 301 n~S~G~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~~~vitVgA~~~~~~~~~~s~~ 370 (430)
|||||..... ......+..++++|.++|++||+||||+|.+.. .+ ++..|+||+|||++.++.++.||++
T Consensus 107 n~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g~~~~~S~~ 181 (247)
T cd07491 107 SMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGD 181 (247)
T ss_pred EeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCCCCccccCC
Confidence 9999984321 123567788889999999999999999997764 33 3567999999999998544443333
No 10
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5.5e-33 Score=267.64 Aligned_cols=176 Identities=25% Similarity=0.281 Sum_probs=141.3
Q ss_pred hhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCC
Q 014109 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (430)
Q Consensus 134 ~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 213 (430)
.+|..+ +|+||+|+|||+|++++||+|... ++...+++...
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------------
Confidence 788888 999999999999999999998432 11222233221
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH
Q 014109 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (430)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~ 293 (430)
...+.|..+|||||||||++.. .....+.|+||+|+|+.+|+++..+ .+...+++++++|++
T Consensus 61 -~~~~~d~~~HGT~vagii~~~~---------~~~~~~~Giap~a~l~~~~v~~~~~--------~~~~~~~~~ai~~a~ 122 (260)
T cd07484 61 -DSDAMDDNGHGTHVAGIIAAAT---------NNGTGVAGVAPKAKIMPVKVLDANG--------SGSLADIANGIRYAA 122 (260)
T ss_pred -CCCCCCCCCcHHHHHHHHhCcc---------CCCCceEeECCCCEEEEEEEECCCC--------CcCHHHHHHHHHHHH
Confidence 1235678899999999999973 2233457999999999999998876 678899999999999
Q ss_pred HCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCCEEEEeccccCCCcccceEe
Q 014109 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 370 (430)
Q Consensus 294 ~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~s~~ 370 (430)
+.+++|||||||... ....+..+++.+.++|+++|+||||+|.....+++.++++|+||+++.++....++++
T Consensus 123 ~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~ 195 (260)
T cd07484 123 DKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNY 195 (260)
T ss_pred HCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCCCCcCCcCCC
Confidence 999999999999843 4456677778899999999999999998888888999999999999987444433333
No 11
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.1e-33 Score=278.73 Aligned_cols=232 Identities=22% Similarity=0.205 Sum_probs=168.7
Q ss_pred hhcccC-CCCccEEEEeecCCCCCCcCccCCCCCCCCC-----CcccccccCCcccccCCCceeeeeEecccccccccCC
Q 014109 135 LLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPK-----SWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP 208 (430)
Q Consensus 135 ~~~~~~-~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~ 208 (430)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. -...+.+.+++..++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--- 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDDI--- 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCcc---
Confidence 588877 9999999999999999999998765433211 11111111 11234566777778877652211
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccC--CCccCccCCCCCCHHHHH
Q 014109 209 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA--TPKASKAAGNTCFEADML 286 (430)
Q Consensus 209 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~--~~~~~~~~~~~~~~~~i~ 286 (430)
....|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .+ ......++
T Consensus 76 -------~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~--------~~~~~~~~ 134 (346)
T cd07475 76 -------LDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG--------STYDDAYA 134 (346)
T ss_pred -------CCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC--------CCCHHHHH
Confidence 1245788999999999999831100 1345689999999999999984 33 67888999
Q ss_pred HHHHHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC----------------CCCCCC
Q 014109 287 AAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS----------------LSNLAP 350 (430)
Q Consensus 287 ~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~~~ 350 (430)
+|++++++.+++|||||||...........+..+++++.++|+++|+||||+|..... .+...+
T Consensus 135 ~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 135 KAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 9999999999999999999854444556677888899999999999999999864322 123578
Q ss_pred CEEEEeccccCCCcccceEeCCCcEEEecccceeeeeeeecceEEeeh
Q 014109 351 WLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFS 398 (430)
Q Consensus 351 ~vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~ 398 (430)
++|+|||++... .....+....||+||+.......+|+.+||.
T Consensus 215 ~~i~Vga~~~~~-----~~~~~~~~~~~S~~G~~~~~~~~pdi~apG~ 257 (346)
T cd07475 215 DVLTVASANKKV-----PNPNGGQMSGFSSWGPTPDLDLKPDITAPGG 257 (346)
T ss_pred CceEEeeccccc-----CCCCCCccCCCcCCCCCcccCcCCeEEeCCC
Confidence 999999998321 1122356678899998777666778887764
No 12
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.3e-33 Score=269.77 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=118.9
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH---
Q 014109 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 293 (430)
Q Consensus 217 ~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~--- 293 (430)
...+..+|||||||||+|.. ++...+.||||+|+|+++|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~---------~~~~~~~GvAp~a~i~~~~v~~~~~---------~~~~~i~~a~~~a~~~~ 127 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVT---------NNGVGVAGVAWGARILPVRVLGKCG---------GTLSDIVDGMRWAAGLP 127 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcC---------CCCCCceeecCCCeEEEEEEecCCC---------CcHHHHHHHHHHHhccC
Confidence 45568899999999999983 3233457999999999999998774 47889999999998
Q ss_pred -------HCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCCEEEEeccccCCCcc
Q 014109 294 -------RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFV 365 (430)
Q Consensus 294 -------~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~ 365 (430)
.++++|||||||..... ...+..+++++.++|++||+||||++.+. ..+++.++++|+|||++.+
T Consensus 128 ~~~~~~~~~~~~Iin~S~G~~~~~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---- 200 (285)
T cd07496 128 VPGVPVNPNPAKVINLSLGGDGAC---SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---- 200 (285)
T ss_pred cCCCcccCCCCeEEEeCCCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----
Confidence 45789999999984321 45677788899999999999999999776 5566788999999999987
Q ss_pred cceEeCCCcEEEecccceeeeeeeecceEEeehHHH
Q 014109 366 GPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLF 401 (430)
Q Consensus 366 ~~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~~~ 401 (430)
+.++.||||| .++|+.+||..++
T Consensus 201 -------~~~~~~S~~g------~~vdi~apG~~i~ 223 (285)
T cd07496 201 -------GQRASYSNYG------PAVDVSAPGGDCA 223 (285)
T ss_pred -------CCcccccCCC------CCCCEEeCCCCcc
Confidence 5667788888 5667777765443
No 13
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-33 Score=264.81 Aligned_cols=175 Identities=22% Similarity=0.231 Sum_probs=135.7
Q ss_pred cEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCC
Q 014109 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (430)
Q Consensus 145 V~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (430)
|+|||||||||.+||+|++..+ ..+++. .....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------------~~~~~~---------------~~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------------ARLFFA---------------GPGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------------ccccCC---------------CCCCCCCCCC
Confidence 7999999999999999974421 101110 0134567899
Q ss_pred CccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q 014109 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (430)
Q Consensus 225 GThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~ 304 (430)
||||||||++.. +.. .||||+|+|+.+|++...+.. . .++.+++++|++||++++++||||||
T Consensus 39 GT~vAgiia~~~---------~~~---~Gvap~a~i~~~~v~~~~~~~-~----~~~~~~i~~ai~~a~~~g~~VIn~S~ 101 (239)
T cd05561 39 GTAVASLLAGAG---------AQR---PGLLPGADLYGADVFGRAGGG-E----GASALALARALDWLAEQGVRVVNISL 101 (239)
T ss_pred HHHHHHHHhCCC---------CCC---cccCCCCEEEEEEEecCCCCC-C----CcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 999999999972 221 699999999999999865310 0 46788999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCCEEEEeccccCCCcccceEeCCCcEEEecccce
Q 014109 305 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFII 383 (430)
Q Consensus 305 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~G~ 383 (430)
|.. . ...++.+++++.++|+++|+||||+|.+. ..+|+..++||+|||++.+ +..+.|||||
T Consensus 102 g~~-~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-----------~~~~~~s~~g- 164 (239)
T cd05561 102 AGP-P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-----------GRLYREANRG- 164 (239)
T ss_pred CCC-C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------CCccccCCCC-
Confidence 972 2 34667788999999999999999999764 3566778999999999987 5667778888
Q ss_pred eeeeeeecceEEeehHH
Q 014109 384 ILFTVQCINIVITFSFL 400 (430)
Q Consensus 384 ~~~~~~~~d~~~~~~~~ 400 (430)
.++|+.+||..+
T Consensus 165 -----~~~di~ApG~~i 176 (239)
T cd05561 165 -----AHVDFAAPGVDV 176 (239)
T ss_pred -----CcceEEccccce
Confidence 566777776543
No 14
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.1e-32 Score=264.97 Aligned_cols=178 Identities=26% Similarity=0.339 Sum_probs=144.7
Q ss_pred hhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCC
Q 014109 135 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 214 (430)
Q Consensus 135 ~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 214 (430)
+|..+.+|+||+|||||+||+.+||+|.++. ...+++...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~---------------------------~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA---------------------------IWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe---------------------------eeeeecCCC-------------
Confidence 6778999999999999999999999997431 122222221
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHH
Q 014109 215 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (430)
Q Consensus 215 ~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~ 294 (430)
....|..+|||||||||++.. .||||+|+|+.+|+++..+ ....+.++++++|+++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~---------------~GvAp~a~i~~~~i~~~~~--------~~~~~~~~~ai~~~~~ 112 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT---------------YGVAKKANLVAVKVLDCNG--------SGTLSGIIAGLEWVAN 112 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc---------------cCcCCCCeEEEEEEeCCCC--------CcCHHHHHHHHHHHHh
Confidence 125678899999999999872 5999999999999999876 6788999999999998
Q ss_pred C-----CCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCCEEEEeccccCCCcccce
Q 014109 295 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPV 368 (430)
Q Consensus 295 ~-----g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~s 368 (430)
. +++|||||||... ...+..+++++.++|+++|+||||+|.+.+ ..++..|+||+|||++.+
T Consensus 113 ~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 113 DATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 7 4899999999832 456677788999999999999999997663 445778999999999997
Q ss_pred EeCCCcEEEecccceeeeeeeecceEEeeh
Q 014109 369 VLGTGMEIIVSNFIIILFTVQCINIVITFS 398 (430)
Q Consensus 369 ~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~ 398 (430)
+....||||| .|+|+++||.
T Consensus 181 ----~~~~~~S~~g------~~~~i~apG~ 200 (255)
T cd04077 181 ----DARASFSNYG------SCVDIFAPGV 200 (255)
T ss_pred ----CCccCcccCC------CCCcEEeCCC
Confidence 4567777888 5667777664
No 15
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-32 Score=264.72 Aligned_cols=199 Identities=24% Similarity=0.292 Sum_probs=156.5
Q ss_pred CCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 014109 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (430)
Q Consensus 142 G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (430)
|+||+|+|||+||+.+||+|.+.... ...+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc----------cCCCCCCCC
Confidence 89999999999999999999755210 01111000 112356677
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHC----CC
Q 014109 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 297 (430)
Q Consensus 222 ~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~----g~ 297 (430)
.+|||||||+|+|.. .+..+...||||+|+|+.+|+++..+ .+..+++++|++|+++. ++
T Consensus 44 ~~HGT~vAgiiag~~--------~~~~~~~~Giap~a~i~~~~v~~~~~--------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSG--------RASNGKYKGVAPGANLVGVKVLDDSG--------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCC--------cccCCceEEECCCCeEEEEEeecCCC--------CccHHHHHHHHHHHHhhccccCc
Confidence 899999999999983 22244468999999999999999876 67889999999999998 99
Q ss_pred cEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCC--CCCCCCCCEEEEeccccCCCcccceEeCCCcE
Q 014109 298 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS--SLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 375 (430)
Q Consensus 298 ~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~s~~g~~~~ 375 (430)
+|||||||...........+..+++++.++|+++|+||||++.... ..++..+++|+|||++.++... ...
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~-------~~~ 180 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHD-------DGI 180 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCCC-------ccc
Confidence 9999999985444556778888899999999999999999998765 4556789999999999874321 236
Q ss_pred EEecccceeeeeeeecceEEeehHH
Q 014109 376 IIVSNFIIILFTVQCINIVITFSFL 400 (430)
Q Consensus 376 ~~~Sn~G~~~~~~~~~d~~~~~~~~ 400 (430)
+.||++|+.......+|+++||..+
T Consensus 181 ~~~s~~G~~~~~~~~~di~apG~~i 205 (264)
T cd07487 181 SYFSSRGPTGDGRIKPDVVAPGENI 205 (264)
T ss_pred cccccCCCCCCCCcCCCEEccccce
Confidence 7889999888877788888887543
No 16
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.2e-32 Score=264.18 Aligned_cols=196 Identities=21% Similarity=0.154 Sum_probs=143.8
Q ss_pred CCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 014109 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (430)
Q Consensus 142 G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (430)
|+||+||||||||+++||+|.+.. ++.... .+...+.+.+ +......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~--------~~~~~~-----------~~~~~~~~~d----------~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKY--------RGWGGG-----------SADHDYNWFD----------PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcc--------cccCCC-----------Cccccccccc----------CCCCCCCCCCC
Confidence 899999999999999999997641 110000 0000000100 01112356678
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHH-------
Q 014109 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 294 (430)
Q Consensus 222 ~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~------- 294 (430)
.+|||||||||+|.. .... ..||||+|+|+.+|+++.. .+...+++++++|+++
T Consensus 52 ~~HGT~vagii~g~~---------~~~~-~~GvAp~a~i~~~~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGND---------GDGQ-QIGVAPGARWIACRALDRN---------GGNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecC---------CCCC-ceEECCCCeEEEEEeecCC---------CCcHHHHHHHHHHHHhccccccc
Confidence 899999999999972 2222 3799999999999999876 5778899999999975
Q ss_pred -----CCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CCCCCCCEEEEeccccCCCccc
Q 014109 295 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 366 (430)
Q Consensus 295 -----~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~ 366 (430)
.+++|||||||.... ....+..+++.+.++|++||+||||++.+... +++.+|++|+|||++.+
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----- 184 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----- 184 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----
Confidence 689999999998432 33455567788889999999999999965443 45678999999999987
Q ss_pred ceEeCCCcEEEecccceeeeeeeecceEEeehH
Q 014109 367 PVVLGTGMEIIVSNFIIILFTVQCINIVITFSF 399 (430)
Q Consensus 367 ~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~ 399 (430)
+....|||+|+......++|+.+||..
T Consensus 185 ------~~~~~~S~~g~~~~~~~~~dv~ApG~~ 211 (264)
T cd07481 185 ------DVLADFSSRGPSTYGRIKPDISAPGVN 211 (264)
T ss_pred ------CCCccccCCCCCCCCCcCceEEECCCC
Confidence 566777888877766666777777643
No 17
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=5.8e-32 Score=260.82 Aligned_cols=194 Identities=22% Similarity=0.185 Sum_probs=142.9
Q ss_pred ccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCC-CCCCC
Q 014109 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS-PRDMD 222 (430)
Q Consensus 144 gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~~ 222 (430)
||+||||||||+.+||+|.... ...+.++.+.++|..+ ... ..|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~-------------~~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDN-------------SNNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccC-------------CCCCCCCCC
Confidence 7999999999999999994221 1123456666766554 112 36788
Q ss_pred CCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEe
Q 014109 223 GHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSI 302 (430)
Q Consensus 223 gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~ 302 (430)
+|||||||||+|.. + +...||||+|+|+.+|+.....+. ......++.|++|+.+++++||||
T Consensus 48 ~HGT~vagiia~~~---------~--~~~~GvAp~a~l~~~~~~~~~~~~------~~~~~~~~~ai~~a~~~~v~VIn~ 110 (261)
T cd07493 48 DHGTAVLSTMAGYT---------P--GVMVGTAPNASYYLARTEDVASET------PVEEDNWVAAAEWADSLGVDIISS 110 (261)
T ss_pred CchhhhheeeeeCC---------C--CCEEEeCCCCEEEEEEecccCCcc------cccHHHHHHHHHHHHHcCCCEEEe
Confidence 99999999999972 2 336899999999999997654310 345667999999999999999999
Q ss_pred ccCCCCCCCC-----------cccHHHHHHHHHHcCCcEEEEecCCCCCCC---CCCCCCCCCEEEEeccccCCCcccce
Q 014109 303 SIGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVGPV 368 (430)
Q Consensus 303 S~G~~~~~~~-----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~~~vitVgA~~~~~~~~~~s 368 (430)
|||....... ....+.++++++.++|+++|+||||+|.+. ..+|+..++||+|||++.++
T Consensus 111 S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~~------ 184 (261)
T cd07493 111 SLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANG------ 184 (261)
T ss_pred CCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccCC------
Confidence 9998432211 123577788999999999999999999763 44567789999999999874
Q ss_pred EeCCCcEEEecccceeeeeeeecceEEeeh
Q 014109 369 VLGTGMEIIVSNFIIILFTVQCINIVITFS 398 (430)
Q Consensus 369 ~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~ 398 (430)
....||+||+.......+|++++|.
T Consensus 185 -----~~~~~S~~G~~~~~~~~pdi~a~G~ 209 (261)
T cd07493 185 -----NKASFSSIGPTADGRLKPDVMALGT 209 (261)
T ss_pred -----CCCccCCcCCCCCCCcCCceEecCC
Confidence 4556666666554444456666553
No 18
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=7e-32 Score=266.89 Aligned_cols=182 Identities=26% Similarity=0.306 Sum_probs=137.6
Q ss_pred hhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCC
Q 014109 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (430)
Q Consensus 134 ~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 213 (430)
.+|+.+.+|+||+|||||||||++||+|.++..+ +.++.+.+++..+... ......
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~~ 59 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPPV 59 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCCC
Confidence 7899999999999999999999999999864211 1122233333221100 001112
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH
Q 014109 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (430)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~ 293 (430)
+...+.|..+|||||||||++. .++ ..+.||||+|+|+.+|+++..+ ......++++++|++
T Consensus 60 ~~~~~~d~~gHGT~vAgiia~~---------~~~-~~~~GiAp~a~i~~~~v~~~~~--------~~~~~~~~~ai~~a~ 121 (312)
T cd07489 60 PDDDPMDCQGHGTHVAGIIAAN---------PNA-YGFTGVAPEATLGAYRVFGCSG--------STTEDTIIAAFLRAY 121 (312)
T ss_pred CCCCCCCCCCcHHHHHHHHhcC---------CCC-CceEEECCCCEEEEEEeecCCC--------CCCHHHHHHHHHHHH
Confidence 2345667899999999999998 333 3457999999999999998765 677888999999999
Q ss_pred HCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCC---CCCCCCCCEEEEeccc
Q 014109 294 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSNLAPWLITVGAGS 359 (430)
Q Consensus 294 ~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~ 359 (430)
+++++|||||||... ......+..+++++.++|+++|+||||+|.... ..++..+++|+|||++
T Consensus 122 ~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~ 188 (312)
T cd07489 122 EDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD 188 (312)
T ss_pred hcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec
Confidence 999999999999832 233366777778899999999999999986543 2345679999999988
No 19
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=4.8e-32 Score=258.27 Aligned_cols=172 Identities=27% Similarity=0.291 Sum_probs=135.9
Q ss_pred cEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCC
Q 014109 145 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (430)
Q Consensus 145 V~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (430)
|+||||||||+.+||+|++.. ++...+++.. ......|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 789999999999999997531 0011111111 11245678899
Q ss_pred CccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q 014109 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 304 (430)
Q Consensus 225 GThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~ 304 (430)
||||||||+|+ .++...+.||||+|+|+.+|+++..+ ....+++.++++|+++.+++||||||
T Consensus 43 GT~vAgiiag~---------~~~~~~~~Gvap~a~i~~~~~~~~~~--------~~~~~~~~~ai~~a~~~~~~Vin~S~ 105 (242)
T cd07498 43 GTACAGVAAAV---------GNNGLGVAGVAPGAKLMPVRIADSLG--------YAYWSDIAQAITWAADNGADVISNSW 105 (242)
T ss_pred HHHHHHHHHhc---------cCCCceeEeECCCCEEEEEEEECCCC--------CccHHHHHHHHHHHHHCCCeEEEecc
Confidence 99999999998 33234468999999999999998775 57889999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHHHc-CCcEEEEecCCCCCCCCCCCCCCCCEEEEeccccCCCcccceEeCCCcEEEecccc
Q 014109 305 GTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFI 382 (430)
Q Consensus 305 G~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~G 382 (430)
|...........+..+++++.+ +|+++|+||||+|......++..+++|+|||++..+ .+..|||||
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~-----------~~~~~s~~g 173 (242)
T cd07498 106 GGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSND-----------ARASYSNYG 173 (242)
T ss_pred CCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCCC-----------CccCcCCCC
Confidence 9855444556778778888888 999999999999987777778899999999999874 455666666
No 20
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.97 E-value=1.7e-31 Score=259.16 Aligned_cols=192 Identities=22% Similarity=0.139 Sum_probs=138.7
Q ss_pred cCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCC
Q 014109 139 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 218 (430)
Q Consensus 139 ~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 218 (430)
+++|+||+|||||||||.+||++.+..-+ ++.+...+.. .....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------------~l~~~~~~~~-------------~~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------------DLPGNVNVLG-------------DLDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------------CCCcceeecc-------------ccCCC
Confidence 57899999999999999998855322110 1111111110 01234
Q ss_pred CCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCc
Q 014109 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (430)
Q Consensus 219 ~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~ 298 (430)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++
T Consensus 45 ~d~~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~ 92 (275)
T cd05562 45 SGGGDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGAD 92 (275)
T ss_pred CCCCchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCC
Confidence 578899999999993 78999999998763 3478899999999999999
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHcC-CcEEEEecCCCCCCCCC-CCCCCCCEEEEeccccCCCcccceEeCCC-cE
Q 014109 299 VLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVGPVVLGTG-ME 375 (430)
Q Consensus 299 VIn~S~G~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~s~~g~~-~~ 375 (430)
|||||||......+.+..+..+++++.++ |+++|+||||+|..... .++.+|+||+|||++.++....+++.+.+ ..
T Consensus 93 Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~~~~~ 172 (275)
T cd05562 93 IIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAPGGTP 172 (275)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccccCCCc
Confidence 99999998433323345677788888887 99999999999985433 35788999999999998877766654432 23
Q ss_pred EEecccc---eeeeeeeecceEEeeh
Q 014109 376 IIVSNFI---IILFTVQCINIVITFS 398 (430)
Q Consensus 376 ~~~Sn~G---~~~~~~~~~d~~~~~~ 398 (430)
..|++|| |.......+|+++||.
T Consensus 173 s~~~~~~~~~p~~~~~~~~di~Apgg 198 (275)
T cd05562 173 SSFDPVGIRLPTPEVRQKPDVTAPDG 198 (275)
T ss_pred ccccCCcccCcCCCCCcCCeEEcCCc
Confidence 3444444 4444456789998864
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=6.7e-31 Score=252.08 Aligned_cols=200 Identities=21% Similarity=0.152 Sum_probs=144.0
Q ss_pred ccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 014109 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (430)
Q Consensus 144 gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (430)
||+|||||||||.+||+|.+.. ....+|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCCC---------CCCCCCCCCCCC
Confidence 7999999999999999997542 1112221110 011234567889
Q ss_pred CCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 014109 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (430)
Q Consensus 224 HGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (430)
|||||||||++.. + .+...||||+++|+.+|++... .+..++++++++|+++.+++|||||
T Consensus 45 HGT~vAgiia~~~---------~-~~~~~GvAp~a~i~~~~v~~~~---------~~~~~~~~~ai~~a~~~~~~Vin~S 105 (254)
T cd07490 45 HGTHVSGTIGGGG---------A-KGVYIGVAPEADLLHGKVLDDG---------GGSLSQIIAGMEWAVEKDADVVSMS 105 (254)
T ss_pred cHHHHHHHHhcCC---------C-CCCEEEECCCCEEEEEEEecCC---------CCcHHHHHHHHHHHHhCCCCEEEEC
Confidence 9999999999983 3 2335799999999999999876 4678999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHc-CCcEEEEecCCCCCCCCCCCCCCCCEEEEeccccCCCcccceEeCCCcEEEecccc
Q 014109 304 IGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFI 382 (430)
Q Consensus 304 ~G~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~G 382 (430)
||..... ...+..+++...+ +|+++|+||||+|......++..+++|+|||++.++....++++|.......+..+
T Consensus 106 ~g~~~~~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~ 182 (254)
T cd07490 106 LGGTYYS---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFGSSGASLVSAPD 182 (254)
T ss_pred CCcCCCC---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCcccccccccCCC
Confidence 9984322 4455555555554 79999999999998877777889999999999998877777777643222222111
Q ss_pred eeeeeeeecceEEeehHHH
Q 014109 383 IILFTVQCINIVITFSFLF 401 (430)
Q Consensus 383 ~~~~~~~~~d~~~~~~~~~ 401 (430)
.+......+|++++|..++
T Consensus 183 ~~~~~~~~~d~~apG~~i~ 201 (254)
T cd07490 183 SPPDEYTKPDVAAPGVDVY 201 (254)
T ss_pred CCccCCcCceEEeccCCeE
Confidence 1222234566777665443
No 22
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.97 E-value=6e-31 Score=248.31 Aligned_cols=177 Identities=25% Similarity=0.302 Sum_probs=136.9
Q ss_pred ccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 014109 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (430)
Q Consensus 144 gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (430)
||+|||||+||+.+||+|.+.. ....+|... . .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~---------------------------~~~~~~~~~-----------~-~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI---------------------------VGGANFTGD-----------D-NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc---------------------------cCcccccCC-----------C-CCCCCCCCC
Confidence 7999999999999999997541 111222211 0 024567889
Q ss_pred CCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 014109 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (430)
Q Consensus 224 HGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (430)
|||||||||++.. +.. ...|+||+|+|+.+|+++..+ ....++++++++|+++.+++|||||
T Consensus 42 HGT~vA~ii~~~~---------~~~-~~~giap~a~i~~~~~~~~~~--------~~~~~~l~~ai~~a~~~~~~Vin~S 103 (229)
T cd07477 42 HGTHVAGIIAALD---------NGV-GVVGVAPEADLYAVKVLNDDG--------SGTYSDIIAGIEWAIENGMDIINMS 103 (229)
T ss_pred CHHHHHHHHhccc---------CCC-ccEeeCCCCEEEEEEEECCCC--------CcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 9999999999972 222 457999999999999999876 6777999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC--CCCCCCEEEEeccccCCCcccceEeCCCcEEEeccc
Q 014109 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNF 381 (430)
Q Consensus 304 ~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~ 381 (430)
||... ....+..+++.+.++|+++|+||||++...... ++..++||+|||++.++ ....||||
T Consensus 104 ~g~~~----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~~-----------~~~~~s~~ 168 (229)
T cd07477 104 LGGPS----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNN-----------NRASFSST 168 (229)
T ss_pred CccCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCCC-----------CcCCccCC
Confidence 99843 234556677889999999999999999876665 77899999999999874 44556666
Q ss_pred ceeeeeeeecceEEeeh
Q 014109 382 IIILFTVQCINIVITFS 398 (430)
Q Consensus 382 G~~~~~~~~~d~~~~~~ 398 (430)
| .++|+++||.
T Consensus 169 g------~~~~~~apg~ 179 (229)
T cd07477 169 G------PEVELAAPGV 179 (229)
T ss_pred C------CCceEEeCCC
Confidence 6 4455555544
No 23
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=4.9e-31 Score=256.15 Aligned_cols=186 Identities=19% Similarity=0.136 Sum_probs=128.8
Q ss_pred hhhcccC-CCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCC
Q 014109 134 DLLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (430)
Q Consensus 134 ~~~~~~~-~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 212 (430)
++|+... .|+||+|+|||||||.+||||+++.... ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~------------------------------~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL------------------------------IS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc------------------------------cC------------
Confidence 7898744 4899999999999999999997542100 00
Q ss_pred CCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHH
Q 014109 213 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 292 (430)
Q Consensus 213 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a 292 (430)
...+.|..+|||||||||+|. +++.| +.||||+|+|+++|+++ . ....+.|..|++|+
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~---------~n~~G-~~GvAp~a~l~~i~v~~--~--------~~~~~ai~~A~~~~ 101 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAK---------DNGIG-VTGIAHGAQAAVVSSTR--V--------SNTADAILDAADYL 101 (277)
T ss_pred --CCCCCCCCCCcchhheeeeee---------cCCCc-eeeeccCCEEEEEEecC--C--------CCHHHHHHHHHhcc
Confidence 012457889999999999997 44444 57999999999999986 1 33333344444443
Q ss_pred HHCCCcEEEeccCCCCCCC-----CcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-------------CCCCCEEE
Q 014109 293 IRDGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-------------NLAPWLIT 354 (430)
Q Consensus 293 ~~~g~~VIn~S~G~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~~~vit 354 (430)
...++.+||||||...... .....+..++++|.++|+++|+||||++.+..... ...|++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 2246778999999843211 12345566888999999999999999987532111 12368999
Q ss_pred EeccccCCCcccceEeCCCcEEEecccceeeeeeeecceEEeeh
Q 014109 355 VGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFS 398 (430)
Q Consensus 355 VgA~~~~~~~~~~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~ 398 (430)
|||++.+.. ..++.||||| +++|+.+||.
T Consensus 182 VgA~~~~~~---------~~~~~fSn~G------~~vdi~APG~ 210 (277)
T cd04843 182 VGAGSSTTG---------HTRLAFSNYG------SRVDVYGWGE 210 (277)
T ss_pred EEeccCCCC---------CccccccCCC------CccceEcCCC
Confidence 999987521 1267778888 5566666664
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.97 E-value=1e-30 Score=255.86 Aligned_cols=213 Identities=23% Similarity=0.167 Sum_probs=149.7
Q ss_pred ccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCC
Q 014109 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (430)
Q Consensus 138 ~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 217 (430)
.+++|+||+|||||||||++||+|.+... .+.. ...+++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 47899999999999999999999975421 0011 12233333322221 1
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCC---cceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHH
Q 014109 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEG---TASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 294 (430)
Q Consensus 218 ~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g---~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~ 294 (430)
..|..+|||||||||+|.. +... .+.||||+|+|+.+|+++..+. .....++.++++++.+
T Consensus 50 ~~d~~~HGT~vAgiia~~~---------~~~~~~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 113 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKG---------NDSSSISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYD 113 (293)
T ss_pred CCCCCCCcchhheeeccCC---------cCCCcccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHH
Confidence 2278999999999999983 2221 4589999999999999987642 3566778999999999
Q ss_pred CCCcEEEeccCCCCCCCCcccHHHHHHHHHH-c-CCcEEEEecCCCCCCCC---CCCCCCCCEEEEeccccCCCcccceE
Q 014109 295 DGVHVLSISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVV 369 (430)
Q Consensus 295 ~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~s~ 369 (430)
.+++|||||||..... .......++.++. + +|+++|+||||++.+.. ..++.++++|+|||++..+....+..
T Consensus 114 ~~~~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~~ 191 (293)
T cd04842 114 AGARISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEGG 191 (293)
T ss_pred hCCEEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccccc
Confidence 9999999999994332 1122333333333 3 89999999999997765 55677899999999998755322110
Q ss_pred ----eCCCcEEEecccceeeeeeeecceEEeehHH
Q 014109 370 ----LGTGMEIIVSNFIIILFTVQCINIVITFSFL 400 (430)
Q Consensus 370 ----~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~~ 400 (430)
.-.+....||++|+.......+|+++||..+
T Consensus 192 ~~~~~~~~~~~~~S~~G~~~~~~~~pdv~ApG~~i 226 (293)
T cd04842 192 LGQSDNSDTVASFSSRGPTYDGRIKPDLVAPGTGI 226 (293)
T ss_pred ccccCCCCccccccCcCCCCCCCcCCCEECCCCCe
Confidence 1123477888998876666666777776643
No 25
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.97 E-value=1.2e-30 Score=255.29 Aligned_cols=181 Identities=23% Similarity=0.229 Sum_probs=128.0
Q ss_pred ccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 014109 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (430)
Q Consensus 144 gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (430)
.|+|||||||||.+||+|++.... ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999853210 000000000000000000111235567899
Q ss_pred CCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 014109 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (430)
Q Consensus 224 HGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (430)
|||||||+|+|. ++ ..||||+|+|+.+|+++..+ .....+++++++|+++++++|||||
T Consensus 55 HGT~vAgiia~~---------~~----~~GvAp~a~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~~~vin~S 113 (294)
T cd07482 55 HGTAVAGQIAAN---------GN----IKGVAPGIGIVSYRVFGSCG--------SAESSWIIKAIIDAADDGVDVINLS 113 (294)
T ss_pred cHhHHHHHHhcC---------CC----CceeCCCCEEEEEEeecCCC--------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 999999999987 22 24999999999999998875 5588999999999999999999999
Q ss_pred cCCCCCCCC-------cccHHHHHHHHHHcCCcEEEEecCCCCCCC----------------------CCCCCCCCCEEE
Q 014109 304 IGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPAP----------------------SSLSNLAPWLIT 354 (430)
Q Consensus 304 ~G~~~~~~~-------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----------------------~~~~~~~~~vit 354 (430)
||....... ..+.+..+++.+.++|++||+||||+|... ...++..+++|+
T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~ 193 (294)
T cd07482 114 LGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVIT 193 (294)
T ss_pred CccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEE
Confidence 997432211 124566677888899999999999999654 123456799999
Q ss_pred EeccccCCCcccceEeC
Q 014109 355 VGAGSLDRDFVGPVVLG 371 (430)
Q Consensus 355 VgA~~~~~~~~~~s~~g 371 (430)
|||++.++..+.||++|
T Consensus 194 Vga~~~~~~~~~~S~~g 210 (294)
T cd07482 194 VSATDNNGNLSSFSNYG 210 (294)
T ss_pred EEeeCCCCCcCccccCC
Confidence 99999986655555444
No 26
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.97 E-value=1.7e-30 Score=268.37 Aligned_cols=184 Identities=26% Similarity=0.275 Sum_probs=126.7
Q ss_pred CCCCccEEEEeecCCCCCCcCccCC-CCCCCCCCcccccccCCcccccCCCceeeeeEecccc-cccccCCCCCCCCCCC
Q 014109 140 RYGQDVIVGLVDNGVWPESKSFSDE-GMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG-FEQLYGPLNATEDDRS 217 (430)
Q Consensus 140 ~~G~gV~VaVIDTGid~~Hpdf~~~-~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~-~~~~~~~~~~~~~~~~ 217 (430)
++|+||+|||||||||+.||+|.+. +.+++...|+-....+... ....+...+... .+...... ...+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~-~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASD-NPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcC-CccccCc
Confidence 4799999999999999999999864 4566777776544332211 111111111110 00000000 0112234
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCc---cCCCCCCHHHHHHHHHHHHH
Q 014109 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK---AAGNTCFEADMLAAIDDAIR 294 (430)
Q Consensus 218 ~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~---~~~~~~~~~~i~~ai~~a~~ 294 (430)
..|..||||||||||||+ +++...+.||||+|+|+++|++...+.... ... .+..+++++|++|+++
T Consensus 74 ~~D~~GHGThvAGIiag~---------~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~-~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 74 SRDENGHGTHVAGIAAGN---------GDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVP-FYQETDIMLAIKYLYD 143 (455)
T ss_pred CCCCCCchHHHHHHHhcC---------CCCCCCccccCCCCcEEEEEeecCCCcccccccccc-cCcHHHHHHHHHHHHH
Confidence 568999999999999998 444455689999999999999988751000 000 2678899999999987
Q ss_pred C-----CCcEEEeccCCCCCCCCcccHHHHHHHHHHcC-CcEEEEecCCCCC
Q 014109 295 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGP 340 (430)
Q Consensus 295 ~-----g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~ 340 (430)
. .+.|||||||.+.........++++++.+.++ |++||+||||+|.
T Consensus 144 ~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~ 195 (455)
T cd07478 144 KALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGN 195 (455)
T ss_pred HHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCC
Confidence 4 47899999998666666777888888887766 9999999999985
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=5e-30 Score=246.71 Aligned_cols=187 Identities=24% Similarity=0.284 Sum_probs=133.1
Q ss_pred CccEEEEeecCCCCCCcCccCCCCCCC-CCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCC
Q 014109 143 QDVIVGLVDNGVWPESKSFSDEGMGPV-PKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 221 (430)
Q Consensus 143 ~gV~VaVIDTGid~~Hpdf~~~~~~~~-~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 221 (430)
+||+|||||||||++||+|.++..... ...+.+....+..+. +... .++| .....++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~-------------~~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV-----DDIY-GWNF-------------VNNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc-----cCCC-cccc-------------cCCCCCCCCC
Confidence 689999999999999999987521100 001111111111110 0000 0011 0123456788
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEE
Q 014109 222 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 301 (430)
Q Consensus 222 ~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn 301 (430)
.+|||||||||+|. ++....+.||||+|+|+.+|+++..+ .++..+++++++|+++.+++|||
T Consensus 63 ~~HGT~va~ii~~~---------~~~~~~~~GvAp~a~l~~~~~~~~~~--------~~~~~~~~~a~~~a~~~~~~vin 125 (259)
T cd07473 63 NGHGTHVAGIIGAV---------GNNGIGIAGVAWNVKIMPLKFLGADG--------SGTTSDAIKAIDYAVDMGAKIIN 125 (259)
T ss_pred CCcHHHHHHHHHCc---------CCCCCceEEeCCCCEEEEEEEeCCCC--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 99999999999998 33334457999999999999998876 68899999999999999999999
Q ss_pred eccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCC---CCCCC--CCCCEEEEeccccCCCcccceE
Q 014109 302 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSN--LAPWLITVGAGSLDRDFVGPVV 369 (430)
Q Consensus 302 ~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~~~vitVgA~~~~~~~~~~s~ 369 (430)
+|||.... ...+..++.++.++|+++|+||||+|... ..+++ ..+++|+|||++.++....+|+
T Consensus 126 ~S~G~~~~----~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~~s~ 194 (259)
T cd07473 126 NSWGGGGP----SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALASFSN 194 (259)
T ss_pred eCCCCCCC----CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcCcccC
Confidence 99998433 45667777899999999999999999762 34443 3589999999999844443333
No 28
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.1e-30 Score=255.75 Aligned_cols=204 Identities=19% Similarity=0.087 Sum_probs=150.9
Q ss_pred EEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCC
Q 014109 146 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHG 225 (430)
Q Consensus 146 ~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 225 (430)
+|||||||||.+||+|++... ....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~---------------------------~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA---------------------------EDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc---------------------------cccccccC-------------CCCcCCCCCCh
Confidence 799999999999999975411 11111100 01156899999
Q ss_pred ccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCC---CcEEEe
Q 014109 226 THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG---VHVLSI 302 (430)
Q Consensus 226 ThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g---~~VIn~ 302 (430)
|||||||++.. .......|+||+++|+.+|+++..+..+. ....+++++||+|+++++ ++||||
T Consensus 42 T~vAgiia~~~---------~~~~~~~gvap~~~l~~~kv~~~~g~~~~----~~~~~~~~~ai~~a~~~~~~~~~ViN~ 108 (291)
T cd04847 42 TAVAGLALYGD---------LTLPGNGLPRPGCRLESVRVLPPNGENDP----ELYGDITLRAIRRAVIQNPDIVRVFNL 108 (291)
T ss_pred HHHHHHHHcCc---------ccCCCCCCcccceEEEEEEEcCCCCCCCc----cChHHHHHHHHHHHHHhCCCceeEEEE
Confidence 99999999752 22234579999999999999998741000 456788999999999863 499999
Q ss_pred ccCCCCCCCCcc-cHHHHHHH-HHHcCCcEEEEecCCCCCCCCCC------------CCCCCCEEEEeccccCCCcccce
Q 014109 303 SIGTNQPFAFNR-DGIAIGAL-NAVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRDFVGPV 368 (430)
Q Consensus 303 S~G~~~~~~~~~-~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~------------~~~~~~vitVgA~~~~~~~~~~s 368 (430)
|||......... ..+..+++ .+.++|++||+||||++...... |+.++++|+|||++.++..+.++
T Consensus 109 SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 109 SLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred ecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 999853322111 24444444 35699999999999999765432 34578999999999999988888
Q ss_pred EeCCCc---EEEecccceeeeeeeecceEEeehHHHH
Q 014109 369 VLGTGM---EIIVSNFIIILFTVQCINIVITFSFLFF 402 (430)
Q Consensus 369 ~~g~~~---~~~~Sn~G~~~~~~~~~d~~~~~~~~~~ 402 (430)
+++... ...||++||......++|+++||..+.+
T Consensus 189 ~~~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~ 225 (291)
T cd04847 189 RYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAY 225 (291)
T ss_pred cccccccccCCCccccCCCCCCCcCCcEEeeCCceee
Confidence 887542 2349999999999999999999987654
No 29
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.97 E-value=9.4e-30 Score=256.53 Aligned_cols=165 Identities=23% Similarity=0.166 Sum_probs=123.6
Q ss_pred CCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCc
Q 014109 219 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 298 (430)
Q Consensus 219 ~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~ 298 (430)
.|+.+|||||||||+|+ ..+...+.||||+|+|+++|+++... ++......+++|++||++.+++
T Consensus 182 ~d~~gHGThVAGIIAg~---------~~~~~~~~GVAP~A~I~svkv~d~~~------gs~~t~~~l~~ai~~ai~~gad 246 (412)
T cd04857 182 TDSGAHGTHVAGIAAAH---------FPEEPERNGVAPGAQIVSIKIGDTRL------GSMETGTALVRAMIAAIETKCD 246 (412)
T ss_pred CCCCCCHHHHHHHHhCC---------CCCCCceEEecCCCeEEEEEeccCCC------CCccchHHHHHHHHHHHHcCCC
Confidence 47889999999999998 33334468999999999999987542 0012345799999999999999
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHH-HHcCCcEEEEecCCCCCCCCCCCC---CCCCEEEEeccccCCC-cccceEe--C
Q 014109 299 VLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN---LAPWLITVGAGSLDRD-FVGPVVL--G 371 (430)
Q Consensus 299 VIn~S~G~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~~~~vitVgA~~~~~~-~~~~s~~--g 371 (430)
|||||||...... ....+..++.+ +.++|+++|+||||+|+..+++.+ .+++||+|||+..... .+.|+.. .
T Consensus 247 VIN~SlG~~~~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~~~~~ 325 (412)
T cd04857 247 LINMSYGEATHWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSLREKL 325 (412)
T ss_pred EEEecCCcCCCCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccccccc
Confidence 9999999843221 12223333433 457999999999999987776542 4689999999865432 3334432 2
Q ss_pred CCcEEEecccceeeeeeeecceEEeehH
Q 014109 372 TGMEIIVSNFIIILFTVQCINIVITFSF 399 (430)
Q Consensus 372 ~~~~~~~Sn~G~~~~~~~~~d~~~~~~~ 399 (430)
.+..+.||++||..++...+|++|||..
T Consensus 326 ~~~~~~fSSrGP~~dG~~~pdI~APG~~ 353 (412)
T cd04857 326 PGNQYTWSSRGPTADGALGVSISAPGGA 353 (412)
T ss_pred CCccccccccCCcccCCcCceEEeCCCc
Confidence 5678999999999998888999999964
No 30
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.9e-29 Score=247.23 Aligned_cols=179 Identities=35% Similarity=0.481 Sum_probs=133.2
Q ss_pred CCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCC-CC-CCCCCCCCC
Q 014109 142 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP-LN-ATEDDRSPR 219 (430)
Q Consensus 142 G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~-~~-~~~~~~~~~ 219 (430)
|+||+||||||||+++||+|.+.. ..++++...++|.......... .. .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997432 1223444555554321111000 00 000112345
Q ss_pred CCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcE
Q 014109 220 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 299 (430)
Q Consensus 220 D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~V 299 (430)
|..+|||||||+|+|. .++...+.||||+|+|+.+|+++..+ .+...++++|++|+++.+++|
T Consensus 60 ~~~~HGT~vAgiiag~---------~~n~~~~~Giap~a~i~~~~~~~~~~--------~~~~~~~~~ai~~a~~~~~~I 122 (295)
T cd07474 60 DATGHGTHVAGIIAGN---------GVNVGTIKGVAPKADLYAYKVLGPGG--------SGTTDVIIAAIEQAVDDGMDV 122 (295)
T ss_pred CCCCcHHHHHHHHhcC---------CCccCceEeECCCCeEEEEEeecCCC--------CCCHHHHHHHHHHHHHcCCCE
Confidence 6899999999999998 33344568999999999999998655 678899999999999999999
Q ss_pred EEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC--CCCCCCEEEEecccc
Q 014109 300 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSL 360 (430)
Q Consensus 300 In~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVgA~~~ 360 (430)
||||||.... ...+.+..+++++.++|+++|+||||+|...... ++..+++|+|||++.
T Consensus 123 in~S~g~~~~--~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~ 183 (295)
T cd07474 123 INLSLGSSVN--GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183 (295)
T ss_pred EEeCCCCCCC--CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeec
Confidence 9999998322 2456677788999999999999999998765544 467899999999873
No 31
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=6e-29 Score=244.31 Aligned_cols=166 Identities=25% Similarity=0.345 Sum_probs=118.0
Q ss_pred ccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCC
Q 014109 138 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 217 (430)
Q Consensus 138 ~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 217 (430)
.+++|+||+|||||||||.+||+|.+... ...+|.+. ..
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~~ 41 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------ED 41 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------CC
Confidence 47899999999999999999999975421 11112111 13
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCC
Q 014109 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 297 (430)
Q Consensus 218 ~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~ 297 (430)
..|..+|||||||||+|.. +. +...||||+|+|+.+|++...+ ......+++|++|+++.++
T Consensus 42 ~~d~~gHGT~VAgiiag~~---------~~-~~~~GvAp~a~i~~~~~~~~~~--------~~~~~~i~~ai~~a~~~g~ 103 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRD---------VP-GPRYGVARGAEIALIGKVLGDG--------GGGDGGILAGIQWAVANGA 103 (297)
T ss_pred CCCCCCcHHHHHHHHhccc---------CC-CcccccCCCCEEEEEEEEeCCC--------CCcHHHHHHHHHHHHHcCC
Confidence 5678899999999999973 22 3346999999999999998765 6777889999999999999
Q ss_pred cEEEeccCCCCC---------CCCcccHHHHHHHHH---------------HcCCcEEEEecCCCCCCCCCCC-----C-
Q 014109 298 HVLSISIGTNQP---------FAFNRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLS-----N- 347 (430)
Q Consensus 298 ~VIn~S~G~~~~---------~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~- 347 (430)
+|||||||.... .......++...+.+ .++|+++|+||||++....... .
T Consensus 104 ~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~ 183 (297)
T cd07480 104 DVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAA 183 (297)
T ss_pred CEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccc
Confidence 999999998431 111122233333333 7899999999999986543322 1
Q ss_pred --CCCCEEEEeccccCC
Q 014109 348 --LAPWLITVGAGSLDR 362 (430)
Q Consensus 348 --~~~~vitVgA~~~~~ 362 (430)
....|++|++.+...
T Consensus 184 ~~~~~~V~~V~~~~~~~ 200 (297)
T cd07480 184 CPSAMGVAAVGALGRTG 200 (297)
T ss_pred cccccEEEEECCCCCCC
Confidence 234555555555443
No 32
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.96 E-value=7e-29 Score=243.53 Aligned_cols=187 Identities=19% Similarity=0.128 Sum_probs=128.2
Q ss_pred hhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCC
Q 014109 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (430)
Q Consensus 134 ~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 213 (430)
.+|..+.+|+||+|+|||||||.+||+|.+.... ...++|....
T Consensus 30 ~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC-----------
Confidence 7899999999999999999999999999754210 0111222110
Q ss_pred CCCCC--CCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHH
Q 014109 214 DDRSP--RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 291 (430)
Q Consensus 214 ~~~~~--~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~ 291 (430)
....+ .|..+|||||||||+|. .+......||||+|+|+.+|+++.. ........++.+
T Consensus 74 ~~~~~~~~~~~gHGT~vAgiiag~---------~~~~~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~~~~ 134 (297)
T cd04059 74 PDPTPRYDDDNSHGTRCAGEIAAV---------GNNGICGVGVAPGAKLGGIRMLDGD----------VTDVVEAESLGL 134 (297)
T ss_pred CCCCCccccccccCcceeeEEEee---------cCCCcccccccccceEeEEEecCCc----------cccHHHHHHHhc
Confidence 01112 37889999999999998 3322235799999999999998764 223345556665
Q ss_pred HHHCCCcEEEeccCCCCCCC---CcccHHHHHHHHHHc-----CCcEEEEecCCCCCCCC--CC--CCCCCCEEEEeccc
Q 014109 292 AIRDGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPS--SL--SNLAPWLITVGAGS 359 (430)
Q Consensus 292 a~~~g~~VIn~S~G~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~--~~--~~~~~~vitVgA~~ 359 (430)
+.+ .++|||||||...... ........+++++.. +|+++|+||||+|.... .. ++..|++|+|||++
T Consensus 135 ~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 135 NPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred ccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 554 4699999999743221 112233334444443 79999999999997322 22 24579999999999
Q ss_pred cCCCcccceEeCCCcEE
Q 014109 360 LDRDFVGPVVLGTGMEI 376 (430)
Q Consensus 360 ~~~~~~~~s~~g~~~~~ 376 (430)
.++..+.||++|.....
T Consensus 214 ~~g~~~~~s~~g~~~~~ 230 (297)
T cd04059 214 ANGVRASYSEVGSSVLA 230 (297)
T ss_pred CCCCCcCCCCCCCcEEE
Confidence 98777777777665443
No 33
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=3.7e-28 Score=238.51 Aligned_cols=154 Identities=24% Similarity=0.244 Sum_probs=119.8
Q ss_pred hhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCC
Q 014109 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (430)
Q Consensus 134 ~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 213 (430)
.+|+.+.+|+||+||||||||+..|| |....+ .+. ..+.. .
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~-------------------~~~~~------------~ 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR-------------------VVLAP------------G 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce-------------------eecCC------------C
Confidence 78999999999999999999999998 653321 000 00000 0
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH
Q 014109 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (430)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~ 293 (430)
......|..||||||||++ .||||+|+|+.+|+++. ..+++++|++|++
T Consensus 53 ~~~~~~D~~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ATDPACDENGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKKAI 101 (298)
T ss_pred CCCCCCCCCCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHHHH
Confidence 1124567889999999865 48999999999999864 3457899999999
Q ss_pred HCCCcEEEeccCCCCCCC---------CcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCCEEEEecccc
Q 014109 294 RDGVHVLSISIGTNQPFA---------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSL 360 (430)
Q Consensus 294 ~~g~~VIn~S~G~~~~~~---------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~ 360 (430)
+++++|||||||...... .....+..++++|.++|++||+||||++. .+|+..|+||+|||++.
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 999999999999843221 12345778889999999999999999874 56888999999999854
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=1.2e-27 Score=225.28 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=120.9
Q ss_pred ccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCC
Q 014109 144 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 223 (430)
Q Consensus 144 gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 223 (430)
||+|||||||||++||+|.+... ..+.+..+. ...+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~--------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLE--------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------ccccccccc--------cccCCCCCCCCCC
Confidence 79999999999999999975421 001110000 0011235567889
Q ss_pred CCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q 014109 224 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303 (430)
Q Consensus 224 HGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 303 (430)
|||||||||++. +|+++|+.+|+++..+ .+..+.+++|++|+++++++|||||
T Consensus 46 HGT~vAgiia~~-------------------~p~~~i~~~~v~~~~~--------~~~~~~~~~ai~~a~~~~v~Vin~S 98 (222)
T cd07492 46 HGTACAGIIKKY-------------------APEAEIGSIKILGEDG--------RCNSFVLEKALRACVENDIRIVNLS 98 (222)
T ss_pred cHHHHHHHHHcc-------------------CCCCeEEEEEEeCCCC--------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 999999999865 5999999999998876 6888999999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCCEEEEeccccCCCcc
Q 014109 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365 (430)
Q Consensus 304 ~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~ 365 (430)
||.... .....+..+++++.++|+++|+||||++.... .|+..++||+||+++..+..+
T Consensus 99 ~G~~~~--~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~~~~ 157 (222)
T cd07492 99 LGGPGD--RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADDPKS 157 (222)
T ss_pred CCCCCC--CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCCCcc
Confidence 998322 22345667778899999999999999986433 377889999999998765443
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.95 E-value=1.9e-27 Score=228.74 Aligned_cols=174 Identities=29% Similarity=0.303 Sum_probs=130.0
Q ss_pred CCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCC
Q 014109 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (430)
Q Consensus 141 ~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D 220 (430)
+|+||+|||||+|++.+||+|.+...... .+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc---------cccCCCCCC
Confidence 59999999999999999999986531100 000000 001124557
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 014109 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (430)
Q Consensus 221 ~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VI 300 (430)
..+|||||||||+|.. +. ....|+||+|+|+.+|+++..+. ......+.++++++++.+++||
T Consensus 45 ~~~HGT~vagiiag~~---------~~-~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vi 107 (267)
T cd04848 45 GDSHGTHVAGVIAAAR---------DG-GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRII 107 (267)
T ss_pred CCChHHHHHHHHhcCc---------CC-CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEE
Confidence 8899999999999983 22 44579999999999999987631 3567789999999999999999
Q ss_pred EeccCCCCCCC-----------CcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC---------CCCCCEEEEecccc
Q 014109 301 SISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSL 360 (430)
Q Consensus 301 n~S~G~~~~~~-----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---------~~~~~vitVgA~~~ 360 (430)
|||||...... .....+..+++.+.++|+++|+||||++....... +..+++|+|||++.
T Consensus 108 n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~ 187 (267)
T cd04848 108 NNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDP 187 (267)
T ss_pred EccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecC
Confidence 99999854222 24456667778899999999999999986543322 34689999999999
Q ss_pred CCCcccc
Q 014109 361 DRDFVGP 367 (430)
Q Consensus 361 ~~~~~~~ 367 (430)
++....+
T Consensus 188 ~~~~~~~ 194 (267)
T cd04848 188 NGTIASY 194 (267)
T ss_pred CCCcccc
Confidence 8665554
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=232.82 Aligned_cols=290 Identities=22% Similarity=0.254 Sum_probs=198.9
Q ss_pred CeEEEEEeCCCCCCCcchhhhHHhHHHHHHhhcchhhhhccc------eEEEeeeeeeeEEEEeC-----HHHHHHhhcC
Q 014109 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARAS------HLYSYKHSINGFSAVLT-----PDEAARLSEL 91 (430)
Q Consensus 23 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------i~~~~~~~~~g~~~~~~-----~~~~~~L~~~ 91 (430)
+..|||.|+..-.. ..+...+++.+.......-+ .-.+|...|.-+.++-. .-++++|+.+
T Consensus 49 e~EyIv~F~~y~~A--------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~h 120 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA--------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMH 120 (1033)
T ss_pred cceeEEEecccccc--------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcC
Confidence 56899999886532 23444554444322211112 22334444554444432 2347899999
Q ss_pred cCeEEEEecCCcccccccC------------CCcccc-cc---------------chh---hhccccccccchhhhcccC
Q 014109 92 EEVVSVYPSHPEKYSLQTT------------RSWEFV-GL---------------DEV---AKQNWNHFNMGQDLLSKAR 140 (430)
Q Consensus 92 p~V~~v~~~~~~~~~~~~~------------~~~~~~-gl---------------~~~---~~~~~~~~~~~~~~~~~~~ 140 (430)
|.|+.+.|.+ .+..... ..-..+ |. .+. +.++......++-+|+.|+
T Consensus 121 p~vk~v~pqr--~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 121 PDVKVVFPQR--RVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred CCceeecchh--hhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 9999999887 3322100 000000 00 000 0011001113458999999
Q ss_pred CCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCC
Q 014109 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 220 (430)
Q Consensus 141 ~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D 220 (430)
+|++|+|||.|||+..+||.|+.... ..+| .+ ...-.|
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnvKE---RTNW-------------------------TN--------------E~tLdD 236 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNVKE---RTNW-------------------------TN--------------EDTLDD 236 (1033)
T ss_pred cCCceEEEEeecccccCCccccchhh---hcCC-------------------------cC--------------cccccc
Confidence 99999999999999999999974310 0122 11 123457
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 014109 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (430)
Q Consensus 221 ~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VI 300 (430)
..||||.|||+||+.. ...|.||+++|+..|||.++. ..++++.++|++||+...++|+
T Consensus 237 ~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred CcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceE
Confidence 8899999999999872 357999999999999999886 7889999999999999999999
Q ss_pred EeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCC--CCEEEEeccccCCCcccceEeCCCcEEEe
Q 014109 301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA--PWLITVGAGSLDRDFVGPVVLGTGMEIIV 378 (430)
Q Consensus 301 n~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--~~vitVgA~~~~~~~~~~s~~g~~~~~~~ 378 (430)
|+|.|++ .+++.++-.-+.+..++++++|.|+||+|+-..+..+++ ..||.||-.+-+ +..+.|
T Consensus 296 NLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdfd-----------D~IA~F 361 (1033)
T KOG4266|consen 296 NLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDFD-----------DHIASF 361 (1033)
T ss_pred eeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecccccc-----------chhhhh
Confidence 9999993 466777766667788999999999999999877777654 689999999998 566667
Q ss_pred cccceeee------eeeecceEEeehH
Q 014109 379 SNFIIILF------TVQCINIVITFSF 399 (430)
Q Consensus 379 Sn~G~~~~------~~~~~d~~~~~~~ 399 (430)
|++|++++ +.-..|||+.|+-
T Consensus 362 SSRGMtTWELP~GYGRmkpDiVtYG~~ 388 (1033)
T KOG4266|consen 362 SSRGMTTWELPHGYGRMKPDIVTYGRD 388 (1033)
T ss_pred ccCCcceeecCCcccccCCceEeeccc
Confidence 77776665 3446788877653
No 37
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.93 E-value=3.7e-26 Score=221.94 Aligned_cols=179 Identities=30% Similarity=0.394 Sum_probs=131.7
Q ss_pred EEEEeecCCCCCCcCcc-CCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCC
Q 014109 146 IVGLVDNGVWPESKSFS-DEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224 (430)
Q Consensus 146 ~VaVIDTGid~~Hpdf~-~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 224 (430)
+|||||||||++||+|. ++- ...+..+.+.|.... .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 321 012233444554431 112355678899
Q ss_pred CccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH-HCCCcEEEec
Q 014109 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVLSIS 303 (430)
Q Consensus 225 GThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~-~~g~~VIn~S 303 (430)
||||||||++.. . .......|+||+|+|+.+|+++.. ......+++++++++ +.+++|||||
T Consensus 49 GT~va~ii~~~~-~-------~~~~~~~Gva~~a~l~~~~i~~~~---------~~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-------NNGPGINGVAPNAKLYSYKIFDNS---------GGTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp HHHHHHHHHHTT-S-------SSSSSETCSSTTSEEEEEECSSTT---------SEEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cchhhhhccccc-c-------cccccccccccccccccccccccc---------ccccccccchhhhhhhccCCcccccc
Confidence 999999999983 1 222335799999999999997765 467788999999999 8999999999
Q ss_pred cCC--CCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CCCCCCCEEEEeccccCCCcccceEeCCC
Q 014109 304 IGT--NQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVLGTG 373 (430)
Q Consensus 304 ~G~--~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~~s~~g~~ 373 (430)
||. ..........+..+++.+.++|+++|+||||+|..... .|+..+++|+||+++..+....|+++|..
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~~~~~~~s~~g~~ 186 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNNGQPASYSNYGGP 186 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETTSSBSTTSSBSTT
T ss_pred ccccccccccccccccccccccccccCcceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 987 22222344456667788999999999999999876553 45567999999999988766777776544
No 38
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.90 E-value=6.4e-23 Score=192.72 Aligned_cols=129 Identities=31% Similarity=0.396 Sum_probs=105.1
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH-HC
Q 014109 217 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RD 295 (430)
Q Consensus 217 ~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~-~~ 295 (430)
...+..+||||||++|++.. .... ..|+||+++|+.+|+....+ ......+++++++++ ..
T Consensus 39 ~~~~~~~HGt~va~~i~~~~---------~~~~-~~g~a~~a~i~~~~~~~~~~--------~~~~~~~~~ai~~~~~~~ 100 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASA---------NNGG-GVGVAPGAKLIPVKVLDGDG--------SGSSSDIAAAIDYAAADQ 100 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCC---------CCCC-CEEeCCCCEEEEEEEecCCC--------CcCHHHHHHHHHHHHhcc
Confidence 44568899999999999983 2112 27999999999999998775 577889999999999 89
Q ss_pred CCcEEEeccCCCCCCCCcccHHHHHHHHHHcC-CcEEEEecCCCCCCCC---CCCCCCCCEEEEeccccCCCcc
Q 014109 296 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFV 365 (430)
Q Consensus 296 g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~ 365 (430)
+++|||||||..... ....+..++.++.++ |+++|+||||++.... ..++..+++|+|||++..+...
T Consensus 101 ~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~ 172 (241)
T cd00306 101 GADVINLSLGGPGSP--PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPA 172 (241)
T ss_pred CCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCcc
Confidence 999999999994322 345566677788877 9999999999998766 4667899999999999975443
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=6.2e-22 Score=189.07 Aligned_cols=147 Identities=23% Similarity=0.179 Sum_probs=104.8
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHH--HHC
Q 014109 218 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IRD 295 (430)
Q Consensus 218 ~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a--~~~ 295 (430)
..|..+|||||||||+|. .|++|+++++..++... ..+.+.++++|+ .+.
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~~------------~~~~~~~~i~~~~~~~~ 84 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGIK------------SNNGQWQECLEAQQNGN 84 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCCC------------CCCccHHHHHHHHHhcC
Confidence 457899999999999997 35679999987665322 223356677787 667
Q ss_pred CCcEEEeccCCCCCCC-----CcccHHHHHHHHHHcC-CcEEEEecCCCCCCCC-----CCCCCCCCEEEEeccccCCCc
Q 014109 296 GVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPS-----SLSNLAPWLITVGAGSLDRDF 364 (430)
Q Consensus 296 g~~VIn~S~G~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-----~~~~~~~~vitVgA~~~~~~~ 364 (430)
+++|||||||...... .....+..+++++.++ |+++|+||||+|.+.+ ..++.++++|+|||++..+..
T Consensus 85 gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~ 164 (247)
T cd07488 85 NVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR 164 (247)
T ss_pred CceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc
Confidence 9999999999843332 1223466677777766 9999999999997542 234567999999999998654
Q ss_pred ccceEeCCCcEEEecccc--eeeeeeeecceEEeehHH
Q 014109 365 VGPVVLGTGMEIIVSNFI--IILFTVQCINIVITFSFL 400 (430)
Q Consensus 365 ~~~s~~g~~~~~~~Sn~G--~~~~~~~~~d~~~~~~~~ 400 (430)
+.++ .||||+ +......|+|+++||..+
T Consensus 165 ~~~s--------~~sn~~~~~~~~~~~~~di~APG~~i 194 (247)
T cd07488 165 FFAS--------DVSNAGSEINSYGRRKVLIVAPGSNY 194 (247)
T ss_pred ceec--------ccccccCCCCCCCCceeEEEEeeeeE
Confidence 4332 334442 334456899999999644
No 40
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.6e-19 Score=183.79 Aligned_cols=195 Identities=24% Similarity=0.265 Sum_probs=142.3
Q ss_pred hhhcc--cCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCC
Q 014109 134 DLLSK--ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 211 (430)
Q Consensus 134 ~~~~~--~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 211 (430)
..|.. +.+|+||+|+|||+||+..||+|.+... ..++|...
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~---------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDG---------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccC----------
Confidence 56676 8999999999999999999999976521 00122211
Q ss_pred CCCCC-CCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCC-CccCccCCCCCCHHHHHHHH
Q 014109 212 TEDDR-SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT-PKASKAAGNTCFEADMLAAI 289 (430)
Q Consensus 212 ~~~~~-~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~-~~~~~~~~~~~~~~~i~~ai 289 (430)
... ...|..+|||||+|++++.. -.+.....|++|+++++.+|++... + ....+++++++
T Consensus 174 --~~~~~~~d~~~hGt~vag~ia~~~--------~~~~~~~~g~a~~~~~~~~~~~~~~~g--------~~~~~~~~~~i 235 (508)
T COG1404 174 --DPEPPFLDDNGHGTHVAGTIAAVI--------FDNGAGVAGVAPGAKLLLVKVLGSGGG--------SGELSDVAEGI 235 (508)
T ss_pred --CCCCCCCCCCCCcceeeeeeeeec--------ccCCCccccccCCCcEEEEEeccCCCC--------cccHHHHHHHH
Confidence 011 25689999999999999941 0112235799999999999999976 5 78888999999
Q ss_pred HHHHHCC--CcEEEeccCCCCCCCCcccHHHHHHHHHHcCC-cEEEEecCCCCCCCC----CCCCCC--CCEEEEecccc
Q 014109 290 DDAIRDG--VHVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPS----SLSNLA--PWLITVGAGSL 360 (430)
Q Consensus 290 ~~a~~~g--~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--~~vitVgA~~~ 360 (430)
+|+++.+ +++||||+|.. ........+..++.++...| +++|+++||.+.+.. .++... +.+++|||++.
T Consensus 236 ~~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 236 EGAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred HHHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 9999999 99999999984 22234455666777887777 999999999997653 233334 49999999999
Q ss_pred CCCcccceEeCCCcEEEecccceeeeeeeecceEEeehH
Q 014109 361 DRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSF 399 (430)
Q Consensus 361 ~~~~~~~s~~g~~~~~~~Sn~G~~~~~~~~~d~~~~~~~ 399 (430)
. +....|||+|.. +|+++.+||..
T Consensus 315 ~-----------~~~~~~s~~g~~----~~~~~~apg~~ 338 (508)
T COG1404 315 S-----------DTVASFSNDGSP----TGVDIAAPGVN 338 (508)
T ss_pred C-----------CccccccccCCC----CCcceeCCCcc
Confidence 5 445566666632 35555555544
No 41
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.8e-19 Score=187.74 Aligned_cols=164 Identities=21% Similarity=0.146 Sum_probs=125.4
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEE
Q 014109 221 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 300 (430)
Q Consensus 221 ~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VI 300 (430)
...||||||||++|+.++.. ...||||+|+|+++++.+..= |+.-+...+.+|+..++++.+|||
T Consensus 309 Sg~HGTHVAgIa~anhpe~p---------~~NGvAPgaqIvSl~IGD~RL------gsMETgtaltRA~~~v~e~~vDiI 373 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP---------ELNGVAPGAQIVSLKIGDGRL------GSMETGTALTRAMIEVIEHNVDII 373 (1304)
T ss_pred CCCCcceehhhhccCCCCCc---------cccCCCCCCEEEEEEecCccc------cccccchHHHHHHHHHHHhcCCEE
Confidence 45699999999999965432 345999999999999977541 112344569999999999999999
Q ss_pred EeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCC---CCCEEEEeccccCCCc-ccceEeC--CCc
Q 014109 301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDF-VGPVVLG--TGM 374 (430)
Q Consensus 301 n~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~---~~~vitVgA~~~~~~~-~~~s~~g--~~~ 374 (430)
|||+|-...-+...+.++.+-+.+.++|+++|+||||+|+.-++++++ ..+||.|||=-..+.. +.|+-+- .+.
T Consensus 374 NmSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~~e~vp~~ 453 (1304)
T KOG1114|consen 374 NMSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSVREPVPSN 453 (1304)
T ss_pred EeccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhhhccCCCC
Confidence 999998544455556666666666789999999999999988888753 5799999995443321 2222221 245
Q ss_pred EEEecccceeeeeeeecceEEeehH
Q 014109 375 EIIVSNFIIILFTVQCINIVITFSF 399 (430)
Q Consensus 375 ~~~~Sn~G~~~~~~~~~d~~~~~~~ 399 (430)
....|++||..++..-|-|+|||..
T Consensus 454 ~YtWsSRgP~~DG~lGVsi~APggA 478 (1304)
T KOG1114|consen 454 PYTWSSRGPCLDGDLGVSISAPGGA 478 (1304)
T ss_pred ccccccCCCCcCCCcceEEecCCcc
Confidence 6778999999999999999999975
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.3e-16 Score=151.94 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=118.6
Q ss_pred hhhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCC
Q 014109 133 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 212 (430)
Q Consensus 133 ~~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 212 (430)
..+|..+++|++|++||+|.||||.|||++.+- .-...++|..+...
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~ny-------------------------naeasydfssndpf-------- 197 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNY-------------------------NAEASYDFSSNDPF-------- 197 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhccc-------------------------CceeecccccCCCC--------
Confidence 379999999999999999999999999997431 11233444433111
Q ss_pred CCCCCCCC--CCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHH
Q 014109 213 EDDRSPRD--MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 290 (430)
Q Consensus 213 ~~~~~~~D--~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~ 290 (430)
+++-..| .+.|||.|||-+++.. +|+.-. +|||++.++..+|+++ ..+..++++|-.
T Consensus 198 -pyprytddwfnshgtrcagev~aar--------dngicg-vgvaydskvagirmld-----------qpymtdlieans 256 (629)
T KOG3526|consen 198 -PYPRYTDDWFNSHGTRCAGEVVAAR--------DNGICG-VGVAYDSKVAGIRMLD-----------QPYMTDLIEANS 256 (629)
T ss_pred -CCCcccchhhhccCccccceeeeec--------cCCcee-eeeeeccccceeeecC-----------Cchhhhhhhhcc
Confidence 1112223 6889999999998874 333322 6999999999999998 457788887743
Q ss_pred HHHH-CCCcEEEeccCCCCCCCCcccH---HHHHHHHHHc-----CCcEEEEecCCCCCCC---CCCCCCCCCEEEEecc
Q 014109 291 DAIR-DGVHVLSISIGTNQPFAFNRDG---IAIGALNAVK-----HNILVACSAGNSGPAP---SSLSNLAPWLITVGAG 358 (430)
Q Consensus 291 ~a~~-~g~~VIn~S~G~~~~~~~~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~g~~~---~~~~~~~~~vitVgA~ 358 (430)
---+ ..++|.+-|||.+......+.+ ..+|+-+-++ .|-+.|.|+|..|.+. |.-.+.+-|.|++-+.
T Consensus 257 mghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsa 336 (629)
T KOG3526|consen 257 MGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSA 336 (629)
T ss_pred cCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehh
Confidence 3222 3578999999986554444433 3233333333 4689999999988542 2223456788888765
Q ss_pred ccCCC
Q 014109 359 SLDRD 363 (430)
Q Consensus 359 ~~~~~ 363 (430)
-.+++
T Consensus 337 indg~ 341 (629)
T KOG3526|consen 337 INDGE 341 (629)
T ss_pred hcCCc
Confidence 55544
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.20 E-value=6.3e-11 Score=119.65 Aligned_cols=103 Identities=25% Similarity=0.236 Sum_probs=81.6
Q ss_pred ceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHC---CCcEEEeccCCCCCCC--CcccHHHHHHHHHH
Q 014109 251 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPFA--FNRDGIAIGALNAV 325 (430)
Q Consensus 251 ~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~---g~~VIn~S~G~~~~~~--~~~~~~~~a~~~a~ 325 (430)
+.||||+|+|+.+++.+.. ...++.++.++++. +++|||||||...... ...+.+..++++|.
T Consensus 83 ~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~ 150 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAA 150 (361)
T ss_pred HHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHH
Confidence 5799999999999997642 24467788888877 9999999999843221 23356777888999
Q ss_pred cCCcEEEEecCCCCCCCC-----------CCCCCCCCEEEEeccccCCCcc
Q 014109 326 KHNILVACSAGNSGPAPS-----------SLSNLAPWLITVGAGSLDRDFV 365 (430)
Q Consensus 326 ~~Gi~vV~AAGN~g~~~~-----------~~~~~~~~vitVgA~~~~~~~~ 365 (430)
.+||+||+||||+|...+ ..++..|+|++|||++......
T Consensus 151 ~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~ 201 (361)
T cd04056 151 AQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGT 201 (361)
T ss_pred hCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCc
Confidence 999999999999997654 2457789999999999866543
No 44
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.97 E-value=2.3e-09 Score=84.50 Aligned_cols=77 Identities=34% Similarity=0.456 Sum_probs=56.3
Q ss_pred EEEEEeCCCCCCCcchhhhHHhHHHHHHhhcchh----hhhccceEEEeeeeeeeEEEEeCHHHHHHhhcCcCeEEEEec
Q 014109 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNE----EEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPS 100 (430)
Q Consensus 25 ~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~~~~~~~g~~~~~~~~~~~~L~~~p~V~~v~~~ 100 (430)
+|||+|+++.. .......+.+++.+++... ......+.+.|...++||+++++++++++|+++|+|++|+||
T Consensus 1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999763 3344566666666554332 234568999999899999999999999999999999999999
Q ss_pred CCccccc
Q 014109 101 HPEKYSL 107 (430)
Q Consensus 101 ~~~~~~~ 107 (430)
. .+++
T Consensus 77 ~--~v~l 81 (82)
T PF05922_consen 77 Q--VVSL 81 (82)
T ss_dssp C--EEEE
T ss_pred c--eEec
Confidence 9 7654
No 45
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00011 Score=75.82 Aligned_cols=208 Identities=14% Similarity=0.051 Sum_probs=126.5
Q ss_pred hhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCC
Q 014109 134 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 213 (430)
Q Consensus 134 ~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 213 (430)
..|..+++|+++.|++.|+|+...||++.... ...+..++....... .
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~-------------------------~~~~s~d~~~~~~~p-------~ 71 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNNY-------------------------DPLGSYDVNRHDNDP-------E 71 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCccccccc-------------------------CcceeEeeecCCCCc-------c
Confidence 67999999999999999999999999986431 122333333221110 1
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHH
Q 014109 214 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 293 (430)
Q Consensus 214 ~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~ 293 (430)
...+......|||-|++-.+... +...-..|++|++++..++++...- ++...+.....
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~---------~~~~C~vg~~~~~~~~g~~~l~~~v------------~~~~~~~~~~~ 130 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARA---------NNLTCGVGVAYNATIGGIRMLAGCV------------SDAVEAPSLGF 130 (431)
T ss_pred cccCCCCccccCCCCCccccccc---------CCCcCCCCcccCccccceeeeeeec------------ccceecccccC
Confidence 11223346889999999999973 2222347999999999999987542 12222222222
Q ss_pred H-CCCcEEEeccCCCCCCCCccc---HHHHHHHH-----HHcCCcEEEEecCCCCCCCCCCC--C--CCCCEEEEecccc
Q 014109 294 R-DGVHVLSISIGTNQPFAFNRD---GIAIGALN-----AVKHNILVACSAGNSGPAPSSLS--N--LAPWLITVGAGSL 360 (430)
Q Consensus 294 ~-~g~~VIn~S~G~~~~~~~~~~---~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~~~~--~--~~~~vitVgA~~~ 360 (430)
. .-+++-..|||........+. ....+... ...+|-+.|+|.||.|....... . .....++.+..+.
T Consensus 131 ~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~ 210 (431)
T KOG3525|consen 131 GPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQ 210 (431)
T ss_pred CCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccc
Confidence 2 247899999997543333222 22222232 33678999999999996554443 2 3445555666666
Q ss_pred CCCcccceEe-CCCcEEEecccceeeeeeeecceE
Q 014109 361 DRDFVGPVVL-GTGMEIIVSNFIIILFTVQCINIV 394 (430)
Q Consensus 361 ~~~~~~~s~~-g~~~~~~~Sn~G~~~~~~~~~d~~ 394 (430)
.+.++-++.. ......-+|+.++..-..+|.|..
T Consensus 211 ~~~~p~y~~~C~~~~~s~~s~~~~~~~~~~~~~~~ 245 (431)
T KOG3525|consen 211 CGKKPQYRERCASCLASTYSSGGPTEECIVCTDPR 245 (431)
T ss_pred cCCCccccccccccccccccCCCCcceeeeecCCC
Confidence 5554433311 233455677777744455555544
No 46
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0054 Score=68.97 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=58.8
Q ss_pred eeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCC-cEEEeccCCCCC----CCCcccHHHHHHHHHHc
Q 014109 252 SGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV-HVLSISIGTNQP----FAFNRDGIAIGALNAVK 326 (430)
Q Consensus 252 ~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~-~VIn~S~G~~~~----~~~~~~~~~~a~~~a~~ 326 (430)
.-+||+|+|..+-.- ......+..|+++....=+ -+|-.||+.... +...-+.+......|..
T Consensus 289 ~A~AP~A~I~lvvap------------~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasa 356 (1174)
T COG4934 289 HAMAPKANIDLVVAP------------NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASA 356 (1174)
T ss_pred hccCccCceEEEEcC------------CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhc
Confidence 467999999988772 2333344444444333211 333356665211 11133445556677889
Q ss_pred CCcEEEEecCCCCCCCCC--------CCCCCCCEEEEec
Q 014109 327 HNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 357 (430)
Q Consensus 327 ~Gi~vV~AAGN~g~~~~~--------~~~~~~~vitVgA 357 (430)
+||.+++|+|..|....+ .+++.|.|.+||-
T Consensus 357 eGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 357 EGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999999865432 3457899999999
No 47
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=83.30 E-value=0.84 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.4
Q ss_pred cCCCCccEEEEeecCCCCCCcCcc
Q 014109 139 ARYGQDVIVGLVDNGVWPESKSFS 162 (430)
Q Consensus 139 ~~~G~gV~VaVIDTGid~~Hpdf~ 162 (430)
.+.|+||+|||+|||||+.-|-++
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 689999999999999999999886
No 48
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.34 E-value=9.1 Score=31.01 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 014109 2 TKIFIFFLFLL 12 (430)
Q Consensus 2 ~~~~~~~l~ll 12 (430)
+|.||||.|+|
T Consensus 3 SK~~llL~l~L 13 (95)
T PF07172_consen 3 SKAFLLLGLLL 13 (95)
T ss_pred hhHHHHHHHHH
Confidence 45555554443
No 49
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=49.35 E-value=10 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=17.0
Q ss_pred CchHHHHHHHHHHHhhhhhccC
Q 014109 1 MTKIFIFFLFLLTLLASSAQKQ 22 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~~ 22 (430)
|+|.++++++|=+++.+.+++.
T Consensus 3 lKKsllLlfflG~ISlSlCeeE 24 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCEEE 24 (46)
T ss_pred chHHHHHHHHHHHcccchHHHh
Confidence 7888888888877777777654
No 50
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=40.64 E-value=43 Score=22.03 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=11.8
Q ss_pred CchHHHHHHHHHHHhhhhhccCCeEEEE
Q 014109 1 MTKIFIFFLFLLTLLASSAQKQKQVYIV 28 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~~~~~yIV 28 (430)
||-+-+.|+++++.+..+....++..||
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~pG~ViI 28 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATPGNVII 28 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCCCeEEE
Confidence 6655453333333333333233555554
No 51
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.08 E-value=26 Score=29.25 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHhhhhh
Q 014109 1 MTKIFIFFLFLLTLLASSA 19 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~ 19 (430)
|+|++++++++++.+++.+
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 8999888866666655555
No 52
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=38.01 E-value=14 Score=25.19 Aligned_cols=31 Identities=39% Similarity=0.585 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHhhhhhccCCeEEEEEeCCCC
Q 014109 1 MTKIFIFFLFLLTLLASSAQKQKQVYIVHFGGSD 34 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~~~~~yIV~l~~~~ 34 (430)
|+|++.++++++.++.+++|. .||--.+.+.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa---N~iRDvqGGt 31 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA---NYIRDVQGGT 31 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh---cceecCCCce
Confidence 888888777777765555554 3565555544
No 53
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=34.95 E-value=66 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHHHhhhhhccCCeEEE
Q 014109 1 MTKIFIFFLFLLTLLASSAQKQKQVYI 27 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~~~~~yI 27 (430)
|||+++++++++++..++. ...+.|.
T Consensus 1 Mrk~l~~~~l~l~LaGCAt-~~~gnf~ 26 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT-SQYGNFV 26 (151)
T ss_pred ChhHHHHHHHHHHHhcccC-CCCCccc
Confidence 9999888888777665553 4445555
No 54
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=83 Score=31.29 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCcEEEeccCCCCCC-----------CCcccHHHHHHHHHH-----cCCcEEEEecCCC
Q 014109 285 MLAAIDDAIRDGVHVLSISIGTNQPF-----------AFNRDGIAIGALNAV-----KHNILVACSAGNS 338 (430)
Q Consensus 285 i~~ai~~a~~~g~~VIn~S~G~~~~~-----------~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~ 338 (430)
=++-++||.++|.+||+ |.|....+ ....|++++.+++-. ..||.||+|+---
T Consensus 179 KVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekp 247 (430)
T KOG2018|consen 179 KVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKP 247 (430)
T ss_pred hhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEecCCC
Confidence 46778899999999997 66653221 344577877776543 3589999997543
No 55
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=32.00 E-value=31 Score=20.75 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=8.3
Q ss_pred chHHHHHHHHHHHh
Q 014109 2 TKIFIFFLFLLTLL 15 (430)
Q Consensus 2 ~~~~~~~l~ll~~~ 15 (430)
+|++..++.++.+.
T Consensus 8 Kkil~~l~a~~~La 21 (25)
T PF08139_consen 8 KKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHh
Confidence 67666666555443
No 56
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=29.90 E-value=51 Score=22.61 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=21.1
Q ss_pred ceEEeehHHHHHHHHHhhhHHHHHhhhhcccc
Q 014109 392 NIVITFSFLFFHFIFIANYITFVFLHLIDFRE 423 (430)
Q Consensus 392 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (430)
+..+..+..+.+||.++. ||..||-|||.
T Consensus 14 E~aigl~~~f~~~L~p~g---WVLshL~~YKk 42 (43)
T cd00930 14 ESAIGLSVFFTTFLLPAG---WVLSHLENYKK 42 (43)
T ss_pred HHHHHHHHHHHHHHhhHH---HHHHHHHHhcc
Confidence 333445566778888875 89999999975
No 57
>PRK10053 hypothetical protein; Provisional
Probab=28.96 E-value=44 Score=28.70 Aligned_cols=20 Identities=20% Similarity=0.075 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHhhhhhc
Q 014109 1 MTKIFIFFLFLLTLLASSAQ 20 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~ 20 (430)
|+|+++++++++++.+..++
T Consensus 1 MKK~~~~~~~~~~s~~~~A~ 20 (130)
T PRK10053 1 MKLQAIALASFLVMPYALAD 20 (130)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 99988777777665554443
No 58
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=28.19 E-value=53 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=18.0
Q ss_pred ehHHHHHHHHHhhhHHHHHhhhhccccc
Q 014109 397 FSFLFFHFIFIANYITFVFLHLIDFREK 424 (430)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
.+..+..|+.++ -||..||-+||.+
T Consensus 19 ltv~f~~~L~Pa---gWVLshL~~YKk~ 43 (44)
T PF02285_consen 19 LTVCFVTFLGPA---GWVLSHLESYKKR 43 (44)
T ss_dssp HHHHHHHHHHHH---HHHHHTHHHHHT-
T ss_pred HHHHHHHHHhhH---HHHHHHHHHhhcc
Confidence 344566777765 4899999999875
No 59
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.67 E-value=53 Score=30.52 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=14.9
Q ss_pred CchHHHHHH-HHHHHhhhhhccCCeEEEE-----EeCCCC
Q 014109 1 MTKIFIFFL-FLLTLLASSAQKQKQVYIV-----HFGGSD 34 (430)
Q Consensus 1 m~~~~~~~l-~ll~~~~~~~~~~~~~yIV-----~l~~~~ 34 (430)
|.|+.++++ ++++++++.+.+...+||. .++.++
T Consensus 1 m~~~~~~~~~~l~l~~~~~~~a~et~YIsD~l~v~lRsGP 40 (206)
T PRK10884 1 MPKLRLIGLTLLALSATAVSHAEEKRYVSDELNTYVRSGP 40 (206)
T ss_pred CchhHHHHHHHHHHhhhhHHHhhccEEEEcceeEEEEcCC
Confidence 766533233 2233333332334456764 355554
No 60
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=27.18 E-value=2.4e+02 Score=23.22 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q 014109 256 PLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTN 307 (430)
Q Consensus 256 p~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 307 (430)
++++|+++--++ .+....++.-++++.+.|+++|-+|-...
T Consensus 36 ~~~elvgf~~Cg-----------GCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFTCG-----------GCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEeeCC-----------CCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 467888764443 46677888888999999999999998753
No 61
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=25.70 E-value=72 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.285 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHHhhhhhccCCeE
Q 014109 1 MTKIFIFFLFLLTLLASSAQKQKQV 25 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~~~~~ 25 (430)
|++.|..+++++++++.+....++.
T Consensus 1 mk~~~~s~~ala~l~sLA~CG~KGP 25 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCGLKGP 25 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcccCCC
Confidence 8889998888888887776665554
No 62
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=25.66 E-value=71 Score=22.69 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHhhhhhccCCeEE
Q 014109 1 MTKIFIFFLFLLTLLASSAQKQKQVY 26 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~~~~~y 26 (430)
|-|.|-|+++++++....+.-....|
T Consensus 1 mlk~lkf~lv~imlaqllsctpsapy 26 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPSAPY 26 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 77888888888777776665444444
No 63
>PRK09810 entericidin A; Provisional
Probab=24.37 E-value=65 Score=21.83 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=6.1
Q ss_pred CchHHHHHHHHH
Q 014109 1 MTKIFIFFLFLL 12 (430)
Q Consensus 1 m~~~~~~~l~ll 12 (430)
|+|++.++++++
T Consensus 2 Mkk~~~l~~~~~ 13 (41)
T PRK09810 2 MKRLIVLVLLAS 13 (41)
T ss_pred hHHHHHHHHHHH
Confidence 566555554333
No 64
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.16 E-value=2.9e+02 Score=27.08 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHCC----CcEEEeccCCCCCC--C-CcccHHHHHHHHHHcCCcEEEEecCCCC
Q 014109 279 TCFEADMLAAIDDAIRDG----VHVLSISIGTNQPF--A-FNRDGIAIGALNAVKHNILVACSAGNSG 339 (430)
Q Consensus 279 ~~~~~~i~~ai~~a~~~g----~~VIn~S~G~~~~~--~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g 339 (430)
......|++||+.+.+.+ +|||-+-=||+... . +-+..+. ....+.-+.||.+-|=+-
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~~~PvisaIGHe~ 118 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAASPIPVISAIGHET 118 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHH---HHHHhCCCCEEEecCCCC
Confidence 467888999999998765 89999998884322 2 2222332 344577799999999875
No 65
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=22.05 E-value=59 Score=28.38 Aligned_cols=21 Identities=48% Similarity=0.385 Sum_probs=14.7
Q ss_pred CchHHHHHHHHHHHhhhhhcc
Q 014109 1 MTKIFIFFLFLLTLLASSAQK 21 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~~~ 21 (430)
||+++++.++++++++..+.+
T Consensus 1 mk~~~l~a~l~~~~~~~~a~A 21 (142)
T PF10614_consen 1 MKYRGLLALLLLLLAASSAQA 21 (142)
T ss_pred CcEeHHHHHHHHHHcccccch
Confidence 898888777776666555544
No 66
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=21.90 E-value=96 Score=22.17 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=11.9
Q ss_pred CchHHHHHHHHHHHhhhhh
Q 014109 1 MTKIFIFFLFLLTLLASSA 19 (430)
Q Consensus 1 m~~~~~~~l~ll~~~~~~~ 19 (430)
||.+.+|.-+||+.+...+
T Consensus 1 MRTL~LLaAlLLlAlqaQA 19 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQA 19 (52)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 7777766666555555444
No 67
>PRK10949 protease 4; Provisional
Probab=20.84 E-value=4e+02 Score=29.15 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHC-CCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCC
Q 014109 279 TCFEADMLAAIDDAIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344 (430)
Q Consensus 279 ~~~~~~i~~ai~~a~~~-g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~ 344 (430)
....+.+++.|+.|.++ .++-|-+-..++.++....+.+..++.++.+.|..||++.|+.......
T Consensus 346 ~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY 412 (618)
T PRK10949 346 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGY 412 (618)
T ss_pred CcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHH
Confidence 34567799999998875 5555554444432344555667778888888899999999887654433
Done!