BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014112
         (430 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
           Responsive Gene
          Length = 136

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKL-CLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
           G LEV +  A+ + +    +  D Y +L C T D +    +N+  G G  P +NE     
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQK----SNVAEGMGTTPEWNETFIFT 65

Query: 114 VKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKN 154
           V    + LK +IF         ED  +G   +PL  V V+ 
Sbjct: 66  VSEGTTELKAKIFDKDVGT---EDDAVGEATIPLEPVFVEG 103


>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
           Protein
          Length = 147

 Score = 36.2 bits (82), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 79  YAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQ 138
           Y K+CL  D +N+  T +     + PVF E     +  +E+  +  +  +     +    
Sbjct: 57  YVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 115

Query: 139 LLGFTLVPLSEV-LVKNGKLEK 159
           ++G   VPL EV LVK G   K
Sbjct: 116 VIGKVSVPLCEVDLVKGGHWWK 137


>pdb|3SSC|A Chain A, Dna Binding Domain Of Restriction Endonuclease Bound To
           Dna
 pdb|3SSC|B Chain B, Dna Binding Domain Of Restriction Endonuclease Bound To
           Dna
 pdb|3SSD|A Chain A, Dna Binding Domain Of Restriction Endonuclease Bound To
           Dna
 pdb|3SSD|B Chain B, Dna Binding Domain Of Restriction Endonuclease Bound To
           Dna
 pdb|3SSE|A Chain A, Dna Binding Domain Of Restriction Endonuclease Bound To
           Dna
 pdb|3SSE|B Chain B, Dna Binding Domain Of Restriction Endonuclease Bound To
           Dna
          Length = 170

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/48 (20%), Positives = 28/48 (58%)

Query: 2   DSPQSVVSPFKSSVAAEPEKHKSDFFARSGSLTKGTEANRKEAVMSNL 49
           D P+++   F+++    P+K+   ++A S  +++G +  R  +++ N+
Sbjct: 97  DIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNI 144


>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
           Cu(Ii)
          Length = 143

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 57  LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT 116
           L V I QA ++  + +    D Y K+ L  D +    T + +    NPVFNE     V  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPY 94

Query: 117 VESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
            E   K  +  +     + +  ++G   VP++ V
Sbjct: 95  SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,701,005
Number of Sequences: 62578
Number of extensions: 334074
Number of successful extensions: 550
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 9
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)