Query 014112
Match_columns 430
No_of_seqs 233 out of 1204
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2.8E-24 6E-29 188.2 14.2 119 54-182 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 5.8E-22 1.3E-26 168.7 12.1 117 55-182 1-118 (118)
3 cd04022 C2A_MCTP_PRT_plant C2 99.9 6.9E-21 1.5E-25 165.1 12.8 120 56-183 1-126 (127)
4 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.8E-20 3.8E-25 161.0 14.5 120 56-184 1-121 (121)
5 cd04036 C2_cPLA2 C2 domain pre 99.8 1.6E-20 3.5E-25 160.8 14.1 117 56-183 1-118 (119)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 1.4E-20 3E-25 163.0 13.3 117 57-181 1-126 (126)
7 cd04015 C2_plant_PLD C2 domain 99.8 3.7E-20 7.9E-25 168.3 15.0 123 53-183 5-158 (158)
8 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.8E-20 6.1E-25 168.0 14.0 125 56-187 1-136 (150)
9 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.5E-20 7.6E-25 163.5 13.1 114 56-178 1-125 (126)
10 cd08395 C2C_Munc13 C2 domain t 99.8 1.4E-19 3E-24 158.5 13.4 106 56-164 1-111 (120)
11 cd04051 C2_SRC2_like C2 domain 99.8 7.3E-20 1.6E-24 157.6 11.3 115 56-178 1-125 (125)
12 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.6E-19 3.5E-24 156.7 13.2 123 56-183 1-133 (133)
13 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.1E-19 6.6E-24 151.7 13.9 117 55-182 1-118 (119)
14 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.4E-19 9.5E-24 154.7 15.2 121 53-185 2-125 (126)
15 cd04044 C2A_Tricalbin-like C2 99.8 3.2E-19 7E-24 152.0 13.2 121 54-184 1-124 (124)
16 cd08376 C2B_MCTP_PRT C2 domain 99.8 4E-19 8.6E-24 150.9 13.6 114 56-184 1-116 (116)
17 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.2E-19 1.1E-23 153.5 14.1 118 57-182 2-121 (121)
18 cd08375 C2_Intersectin C2 doma 99.8 5.6E-19 1.2E-23 156.7 14.5 119 51-182 11-135 (136)
19 cd08391 C2A_C2C_Synaptotagmin_ 99.8 4.5E-19 9.9E-24 150.5 12.9 114 55-182 1-121 (121)
20 cd08678 C2_C21orf25-like C2 do 99.8 8.9E-19 1.9E-23 151.9 14.8 121 57-186 1-123 (126)
21 cd04046 C2_Calpain C2 domain p 99.8 1.2E-18 2.6E-23 151.6 15.3 122 53-185 1-124 (126)
22 cd04014 C2_PKC_epsilon C2 doma 99.8 1.2E-18 2.6E-23 152.1 14.4 117 54-185 3-131 (132)
23 cd08378 C2B_MCTP_PRT_plant C2 99.8 7.5E-19 1.6E-23 152.6 12.6 115 56-183 1-120 (121)
24 cd04024 C2A_Synaptotagmin-like 99.8 1E-18 2.2E-23 150.0 13.3 120 55-182 1-128 (128)
25 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.1E-18 2.3E-23 150.9 13.4 118 57-181 2-120 (121)
26 cd04043 C2_Munc13_fungal C2 do 99.8 2.3E-18 5.1E-23 148.1 14.7 119 55-185 1-123 (126)
27 cd08381 C2B_PI3K_class_II C2 d 99.8 6.5E-19 1.4E-23 153.1 11.0 103 54-163 12-121 (122)
28 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.9E-18 8.5E-23 148.8 12.4 105 53-163 13-124 (125)
29 cd08677 C2A_Synaptotagmin-13 C 99.8 1.7E-18 3.8E-23 151.7 10.1 104 53-162 12-117 (118)
30 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.1E-18 6.8E-23 149.1 11.7 104 54-163 14-124 (125)
31 cd08387 C2A_Synaptotagmin-8 C2 99.8 4.9E-18 1.1E-22 146.2 12.4 106 53-164 14-123 (124)
32 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.1E-18 1.3E-22 145.4 12.4 106 53-164 14-123 (124)
33 cd08685 C2_RGS-like C2 domain 99.8 3.6E-18 7.8E-23 148.2 11.1 105 54-163 11-119 (119)
34 cd08392 C2A_SLP-3 C2 domain fi 99.8 5.2E-18 1.1E-22 149.3 12.2 106 54-164 14-128 (128)
35 cd08382 C2_Smurf-like C2 domai 99.8 7E-18 1.5E-22 146.2 12.7 116 57-180 2-122 (123)
36 cd04050 C2B_Synaptotagmin-like 99.8 4.8E-18 1E-22 143.0 11.3 100 56-165 1-102 (105)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.5E-18 2.1E-22 144.3 13.1 116 56-180 1-122 (123)
38 cd04028 C2B_RIM1alpha C2 domai 99.8 6.7E-18 1.4E-22 152.7 12.6 105 54-164 28-137 (146)
39 KOG1030 Predicted Ca2+-depende 99.8 3E-18 6.5E-23 157.7 10.2 95 51-153 2-97 (168)
40 cd08680 C2_Kibra C2 domain fou 99.8 6.3E-18 1.4E-22 148.5 11.0 106 53-163 12-124 (124)
41 cd08373 C2A_Ferlin C2 domain f 99.7 2.7E-17 5.9E-22 142.4 14.2 116 61-188 2-121 (127)
42 cd04049 C2_putative_Elicitor-r 99.7 9.6E-18 2.1E-22 144.4 11.1 102 55-164 1-107 (124)
43 cd04041 C2A_fungal C2 domain f 99.7 6.8E-18 1.5E-22 143.6 9.9 101 55-164 1-107 (111)
44 cd04030 C2C_KIAA1228 C2 domain 99.7 2.1E-17 4.6E-22 142.1 12.2 104 54-163 15-126 (127)
45 cd08388 C2A_Synaptotagmin-4-11 99.7 2E-17 4.4E-22 144.9 11.8 105 54-163 15-126 (128)
46 cd08389 C2A_Synaptotagmin-14_1 99.7 1.5E-17 3.3E-22 144.8 10.8 105 53-164 14-123 (124)
47 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.9E-17 4.1E-22 142.3 11.3 107 52-164 13-124 (125)
48 cd08521 C2A_SLP C2 domain firs 99.7 2.6E-17 5.5E-22 140.6 11.6 105 53-163 12-123 (123)
49 cd04027 C2B_Munc13 C2 domain s 99.7 4.4E-17 9.5E-22 141.9 12.9 114 56-180 2-127 (127)
50 cd04010 C2B_RasA3 C2 domain se 99.7 6.8E-17 1.5E-21 146.1 13.5 107 56-165 1-122 (148)
51 cd08688 C2_KIAA0528-like C2 do 99.7 3.2E-17 7E-22 139.2 10.3 100 57-164 1-108 (110)
52 PLN03008 Phospholipase D delta 99.7 5E-17 1.1E-21 178.6 14.3 128 52-187 11-181 (868)
53 cd08394 C2A_Munc13 C2 domain f 99.7 5.3E-17 1.2E-21 144.1 11.1 99 55-165 2-101 (127)
54 cd08676 C2A_Munc13-like C2 dom 99.7 6.3E-17 1.4E-21 147.3 11.8 117 36-163 5-153 (153)
55 cd04017 C2D_Ferlin C2 domain f 99.7 1.3E-16 2.9E-21 140.2 13.5 119 56-185 2-134 (135)
56 cd08383 C2A_RasGAP C2 domain ( 99.7 1.6E-16 3.4E-21 134.4 13.1 114 57-182 2-117 (117)
57 cd04031 C2A_RIM1alpha C2 domai 99.7 8.8E-17 1.9E-21 137.7 11.5 103 54-163 15-124 (125)
58 cd08390 C2A_Synaptotagmin-15-1 99.7 1.4E-16 3E-21 136.4 12.5 106 53-164 12-122 (123)
59 cd00275 C2_PLC_like C2 domain 99.7 3.8E-16 8.2E-21 133.8 15.0 120 55-182 2-127 (128)
60 cd08691 C2_NEDL1-like C2 domai 99.7 3.1E-16 6.8E-21 140.1 14.7 118 56-180 2-136 (137)
61 cd04039 C2_PSD C2 domain prese 99.7 1E-16 2.2E-21 137.1 10.3 91 55-153 1-98 (108)
62 cd04052 C2B_Tricalbin-like C2 99.7 1.5E-16 3.3E-21 135.5 11.0 104 70-185 7-111 (111)
63 cd04040 C2D_Tricalbin-like C2 99.7 2.5E-16 5.5E-21 133.2 11.8 111 57-177 1-113 (115)
64 cd04045 C2C_Tricalbin-like C2 99.7 3E-16 6.5E-21 136.1 12.1 102 55-165 1-103 (120)
65 cd04011 C2B_Ferlin C2 domain s 99.7 3E-16 6.5E-21 133.1 11.4 99 54-164 3-109 (111)
66 cd04018 C2C_Ferlin C2 domain t 99.7 1.9E-16 4.1E-21 143.8 10.4 101 56-164 1-124 (151)
67 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.5E-16 5.4E-21 143.9 11.0 109 51-165 23-138 (162)
68 cd04013 C2_SynGAP_like C2 doma 99.7 1.7E-15 3.6E-20 137.3 14.1 123 52-186 8-142 (146)
69 cd08690 C2_Freud-1 C2 domain f 99.7 2.7E-15 5.9E-20 137.1 15.0 122 57-186 4-140 (155)
70 KOG1028 Ca2+-dependent phospho 99.6 1.1E-15 2.3E-20 159.1 13.8 144 53-210 165-310 (421)
71 cd04038 C2_ArfGAP C2 domain pr 99.6 8.4E-16 1.8E-20 138.5 11.1 91 54-153 1-92 (145)
72 cd04032 C2_Perforin C2 domain 99.6 1.2E-15 2.6E-20 134.8 11.7 92 52-152 25-119 (127)
73 cd04009 C2B_Munc13-like C2 dom 99.6 1E-15 2.2E-20 134.3 10.7 95 53-152 14-118 (133)
74 cd08675 C2B_RasGAP C2 domain s 99.6 1.7E-15 3.6E-20 134.5 10.8 103 57-166 1-121 (137)
75 cd04021 C2_E3_ubiquitin_ligase 99.6 5E-15 1.1E-19 129.0 13.3 116 56-180 3-124 (125)
76 cd08406 C2B_Synaptotagmin-12 C 99.6 1.8E-15 3.8E-20 134.9 10.5 103 54-164 14-122 (136)
77 cd08384 C2B_Rabphilin_Doc2 C2 99.6 9.8E-16 2.1E-20 133.4 8.4 104 53-164 11-120 (133)
78 cd08402 C2B_Synaptotagmin-1 C2 99.6 4.2E-15 9E-20 130.4 12.4 105 52-164 12-122 (136)
79 cd08407 C2B_Synaptotagmin-13 C 99.6 3.6E-15 7.8E-20 133.6 10.6 102 54-163 14-123 (138)
80 cd04035 C2A_Rabphilin_Doc2 C2 99.6 5.2E-15 1.1E-19 127.2 11.0 94 54-152 14-113 (123)
81 cd08409 C2B_Synaptotagmin-15 C 99.6 1.3E-15 2.8E-20 134.9 7.4 104 54-164 14-123 (137)
82 cd08686 C2_ABR C2 domain in th 99.6 1.1E-14 2.3E-19 127.9 12.8 97 57-164 1-108 (118)
83 PLN03200 cellulose synthase-in 99.6 3.3E-15 7.3E-20 176.4 12.0 119 53-184 1978-2101(2102)
84 cd00276 C2B_Synaptotagmin C2 d 99.6 1.4E-15 3.1E-20 131.2 6.5 104 54-165 13-122 (134)
85 cd08408 C2B_Synaptotagmin-14_1 99.6 6.6E-15 1.4E-19 131.1 10.7 106 52-164 12-124 (138)
86 cd08405 C2B_Synaptotagmin-7 C2 99.6 6.8E-15 1.5E-19 129.0 10.4 104 53-164 13-122 (136)
87 cd04026 C2_PKC_alpha_gamma C2 99.6 9E-15 1.9E-19 127.1 11.0 104 55-165 13-121 (131)
88 cd08403 C2B_Synaptotagmin-3-5- 99.6 8E-15 1.7E-19 128.3 10.7 105 52-164 11-121 (134)
89 cd08404 C2B_Synaptotagmin-4 C2 99.6 9.1E-15 2E-19 128.4 10.6 104 53-164 13-122 (136)
90 cd04048 C2A_Copine C2 domain f 99.6 9.2E-15 2E-19 125.6 9.9 99 60-164 5-113 (120)
91 cd08410 C2B_Synaptotagmin-17 C 99.6 1.3E-14 2.8E-19 127.9 10.9 104 54-164 13-122 (135)
92 cd08692 C2B_Tac2-N C2 domain s 99.6 1.9E-14 4.1E-19 129.0 11.4 108 52-163 11-121 (135)
93 cd04037 C2E_Ferlin C2 domain f 99.6 1.6E-14 3.4E-19 125.7 10.5 118 56-184 1-120 (124)
94 PLN02270 phospholipase D alpha 99.5 1E-13 2.2E-18 152.5 14.2 129 53-188 6-153 (808)
95 PF00168 C2: C2 domain; Inter 99.5 1.4E-13 3.1E-18 107.8 9.4 83 57-144 1-85 (85)
96 cd04047 C2B_Copine C2 domain s 99.5 2.2E-13 4.8E-18 114.8 9.2 88 59-152 4-100 (110)
97 COG5038 Ca2+-dependent lipid-b 99.3 4.5E-12 9.8E-17 142.3 12.5 144 34-188 416-562 (1227)
98 cd00030 C2 C2 domain. The C2 d 99.3 8.2E-12 1.8E-16 97.8 10.3 100 57-163 1-102 (102)
99 KOG0696 Serine/threonine prote 99.3 8.2E-13 1.8E-17 136.5 4.0 104 55-165 180-288 (683)
100 smart00239 C2 Protein kinase C 99.3 1.9E-11 4.1E-16 96.9 10.5 92 56-152 1-94 (101)
101 PLN02223 phosphoinositide phos 99.3 2.7E-11 5.9E-16 129.0 14.5 104 54-166 408-520 (537)
102 cd08374 C2F_Ferlin C2 domain s 99.3 2E-11 4.4E-16 109.2 9.6 97 56-153 1-124 (133)
103 PLN02952 phosphoinositide phos 99.2 1.9E-10 4.2E-15 124.3 14.5 119 54-183 469-597 (599)
104 COG5038 Ca2+-dependent lipid-b 99.2 5.7E-11 1.2E-15 133.6 9.0 127 51-186 1036-1164(1227)
105 KOG1011 Neurotransmitter relea 99.2 4E-11 8.7E-16 128.2 7.4 123 53-184 293-425 (1283)
106 PLN02230 phosphoinositide phos 99.1 3.7E-10 7.9E-15 122.1 13.5 104 54-166 468-581 (598)
107 PLN02228 Phosphoinositide phos 99.1 7.6E-10 1.7E-14 119.1 14.6 124 54-186 430-564 (567)
108 PLN02222 phosphoinositide phos 99.1 1.3E-09 2.8E-14 117.6 14.3 104 54-166 451-564 (581)
109 cd08689 C2_fungal_Pkc1p C2 dom 99.1 2.3E-10 5E-15 99.1 6.8 85 57-152 1-88 (109)
110 PLN02352 phospholipase D epsil 99.1 9.4E-10 2E-14 121.3 12.6 121 53-187 8-134 (758)
111 KOG1028 Ca2+-dependent phospho 99.0 9.8E-10 2.1E-14 114.8 10.0 96 52-149 295-393 (421)
112 KOG0169 Phosphoinositide-speci 99.0 2.7E-09 5.7E-14 116.5 12.3 121 55-183 616-744 (746)
113 KOG2059 Ras GTPase-activating 99.0 1.5E-09 3.2E-14 117.4 9.2 124 55-186 5-128 (800)
114 KOG1264 Phospholipase C [Lipid 98.8 2.1E-08 4.6E-13 109.9 9.9 94 55-153 1065-1163(1267)
115 KOG1328 Synaptic vesicle prote 98.4 3.9E-08 8.4E-13 106.9 -0.9 132 52-186 111-304 (1103)
116 KOG1031 Predicted Ca2+-depende 98.3 1.7E-06 3.6E-11 92.7 9.6 120 55-184 3-137 (1169)
117 KOG0905 Phosphoinositide 3-kin 98.3 4.2E-07 9.2E-12 102.9 4.7 105 54-164 1523-1634(1639)
118 KOG1013 Synaptic vesicle prote 98.3 1.3E-07 2.8E-12 95.6 -0.7 131 54-186 92-232 (362)
119 KOG1328 Synaptic vesicle prote 98.3 3.3E-07 7.1E-12 99.9 2.2 98 54-152 946-1049(1103)
120 KOG1326 Membrane-associated pr 98.0 5.5E-06 1.2E-10 93.0 4.5 94 53-152 611-706 (1105)
121 KOG2059 Ras GTPase-activating 98.0 1.4E-05 3.1E-10 87.2 7.0 137 59-202 135-312 (800)
122 KOG1011 Neurotransmitter relea 97.9 6.1E-05 1.3E-09 81.9 10.2 108 54-164 1124-1236(1283)
123 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00011 2.4E-09 66.3 5.8 106 57-163 1-143 (143)
124 KOG1265 Phospholipase C [Lipid 97.5 0.00046 9.9E-09 77.4 9.5 90 53-153 701-797 (1189)
125 KOG1013 Synaptic vesicle prote 97.4 0.00022 4.8E-09 72.6 5.3 90 53-144 231-323 (362)
126 KOG3837 Uncharacterized conser 97.2 0.00043 9.4E-09 72.4 4.9 167 8-185 318-505 (523)
127 PLN02964 phosphatidylserine de 97.0 0.00094 2E-08 73.8 6.0 90 51-153 50-140 (644)
128 cd08684 C2A_Tac2-N C2 domain f 97.0 0.0013 2.8E-08 56.2 5.0 91 58-152 2-94 (103)
129 cd08398 C2_PI3K_class_I_alpha 96.8 0.015 3.3E-07 53.7 11.4 105 55-185 8-124 (158)
130 cd08693 C2_PI3K_class_I_beta_d 96.8 0.016 3.5E-07 54.1 11.1 94 55-151 8-121 (173)
131 PF10358 NT-C2: N-terminal C2 96.7 0.086 1.9E-06 46.4 14.6 127 53-186 5-138 (143)
132 cd04012 C2A_PI3K_class_II C2 d 96.4 0.031 6.8E-07 51.8 10.4 113 55-184 8-136 (171)
133 KOG2060 Rab3 effector RIM1 and 95.9 0.0054 1.2E-07 63.6 3.3 108 53-164 267-378 (405)
134 cd08380 C2_PI3K_like C2 domain 95.9 0.044 9.5E-07 49.6 8.6 91 55-151 8-108 (156)
135 cd08399 C2_PI3K_class_I_gamma 95.7 0.11 2.5E-06 49.0 10.9 111 55-184 10-139 (178)
136 KOG1326 Membrane-associated pr 94.5 0.0091 2E-07 68.1 -0.5 120 51-180 202-329 (1105)
137 PF15627 CEP76-C2: CEP76 C2 do 94.4 0.5 1.1E-05 44.0 10.8 133 52-187 6-154 (156)
138 PF15625 CC2D2AN-C2: CC2D2A N- 93.1 1.1 2.4E-05 41.6 10.7 108 73-186 34-164 (168)
139 KOG1327 Copine [Signal transdu 93.1 0.14 3.1E-06 55.5 5.5 87 60-152 141-236 (529)
140 cd08397 C2_PI3K_class_III C2 d 92.8 0.37 8.1E-06 44.5 7.1 96 74-187 28-127 (159)
141 PF14429 DOCK-C2: C2 domain in 92.5 0.32 7E-06 45.3 6.4 57 90-149 59-120 (184)
142 PF00792 PI3K_C2: Phosphoinosi 92.1 0.85 1.9E-05 40.7 8.4 88 77-186 3-103 (142)
143 KOG1329 Phospholipase D1 [Lipi 91.6 0.4 8.6E-06 54.8 6.8 104 76-186 138-243 (887)
144 cd08679 C2_DOCK180_related C2 91.4 1.8 3.9E-05 40.2 10.0 56 91-149 54-115 (178)
145 cd08694 C2_Dock-A C2 domains f 91.3 0.7 1.5E-05 44.5 7.3 57 90-148 53-114 (196)
146 cd08695 C2_Dock-B C2 domains f 90.9 0.61 1.3E-05 44.6 6.5 57 90-148 53-112 (189)
147 PF12416 DUF3668: Cep120 prote 90.6 3.4 7.5E-05 42.9 12.0 121 57-186 2-135 (340)
148 cd08687 C2_PKN-like C2 domain 88.8 3.1 6.8E-05 35.9 8.4 86 74-182 7-92 (98)
149 smart00142 PI3K_C2 Phosphoinos 87.0 3.1 6.8E-05 35.2 7.4 59 57-116 13-74 (100)
150 PF11618 DUF3250: Protein of u 85.8 5.6 0.00012 34.7 8.5 86 90-183 11-105 (107)
151 KOG1452 Predicted Rho GTPase-a 81.8 2.8 6E-05 43.5 5.6 118 53-184 49-168 (442)
152 cd08696 C2_Dock-C C2 domains f 79.6 6 0.00013 37.6 6.8 59 90-149 54-118 (179)
153 cd08697 C2_Dock-D C2 domains f 73.6 10 0.00023 36.2 6.6 59 90-149 56-123 (185)
154 KOG1327 Copine [Signal transdu 69.0 9.3 0.0002 42.0 5.8 83 67-152 2-104 (529)
155 PF00714 IFN-gamma: Interferon 60.0 6.1 0.00013 36.2 2.0 22 359-380 48-69 (138)
156 cd05137 RasGAP_CLA2_BUD2 CLA2/ 50.1 23 0.00051 37.5 4.7 46 139-185 1-46 (395)
157 KOG3543 Ca2+-dependent activat 47.7 1.7E+02 0.0037 33.4 10.8 149 27-190 314-464 (1218)
158 PTZ00447 apical membrane antig 46.3 1.5E+02 0.0032 31.7 9.6 117 54-186 57-176 (508)
159 KOG2419 Phosphatidylserine dec 37.9 4.8 0.0001 45.1 -2.6 81 52-149 277-361 (975)
160 KOG4269 Rac GTPase-activating 36.9 20 0.00044 41.7 1.9 58 53-116 757-816 (1112)
161 PF14186 Aida_C2: Cytoskeletal 34.7 89 0.0019 29.0 5.4 97 54-153 12-115 (147)
162 KOG0694 Serine/threonine prote 31.9 15 0.00032 41.5 -0.1 98 75-187 27-125 (694)
163 PF04990 RNA_pol_Rpb1_7: RNA p 24.5 31 0.00067 31.3 0.6 21 220-240 16-38 (135)
164 PF12416 DUF3668: Cep120 prote 24.0 4.9E+02 0.011 27.3 9.3 92 54-153 191-296 (340)
165 PF06219 DUF1005: Protein of u 22.6 9.6E+02 0.021 26.3 11.1 108 74-184 34-168 (460)
166 PF07162 B9-C2: Ciliary basal 20.5 6.7E+02 0.015 23.0 10.1 86 59-150 6-104 (168)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.92 E-value=2.8e-24 Score=188.20 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=99.5
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN 133 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded 133 (430)
.|.|+|+|++|++|++.+ +|++||||+|+|++ +++||+|+.+++.||+|||+|+|.|.+....|.+ .++|+|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~----~V~d~d 72 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH---AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYI----EIFDER 72 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC---EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEE----EEEeCC
Confidence 489999999999999998 89999999999965 6889999988789999999999999864334444 449999
Q ss_pred cc-cCceeEEEEEeCcc-ccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 134 YL-EDQLLGFTLVPLSE-VLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 134 ~v-~DdlIG~a~VPLsd-Ll~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
.+ .|++||.+.|+|.. +.. +...+.||+|..... ....|.|+|+|+|
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~-g~~~~~W~~L~~~~~-~~~~g~i~l~l~y 121 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFN-GETLDDWYSLSGKQG-EDKEGMINLVFSY 121 (121)
T ss_pred CCcCCceEEEEEEECchhccC-CCCccccEeCcCccC-CCCceEEEEEEeC
Confidence 87 69999999999974 654 566789999975332 2467999999987
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.87 E-value=5.8e-22 Score=168.72 Aligned_cols=117 Identities=29% Similarity=0.385 Sum_probs=99.6
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecc
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKN 133 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded 133 (430)
|.|+|+|++|+||++.+.++++||||+|++.+ .+++|+++.+++.||+|||+|.|.+... ...|.++| +|++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v----~d~~ 73 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAV----FDDD 73 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC---CccccccccCCCCCCccCceEEEEecCCCCCEEEEEE----EeCC
Confidence 68999999999999999999999999999975 6789999877679999999999999873 34566655 7777
Q ss_pred cccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 134 YLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 134 ~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
..+|++||.+.++|.++.. +....+||+|... +..+|.|+|+|+|
T Consensus 74 ~~~~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~---~~~~G~i~l~l~f 118 (118)
T cd08681 74 KRKPDLIGDTEVDLSPALK-EGEFDDWYELTLK---GRYAGEVYLELTF 118 (118)
T ss_pred CCCCcceEEEEEecHHHhh-cCCCCCcEEeccC---CcEeeEEEEEEEC
Confidence 6679999999999999986 4556799999643 2468999999987
No 3
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.85 E-value=6.9e-21 Score=165.11 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=100.0
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC----CceEEEEEEEEee
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE----SSLKCEIFMMSRV 131 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d----~~LkleV~v~v~D 131 (430)
.|+|+|++|++|...+..+..||||+|++.+ +++||+++++ +.||+|||+|.|.+.... ..|.++ ++|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~----V~d 72 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG---QKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVY----VYN 72 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEE----Eee
Confidence 3899999999999999889999999999975 5889999986 799999999999998532 234444 478
Q ss_pred cccc--cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112 132 KNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 132 ed~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
++.+ +|++||.+.|+|.++...+.....||+|..+...+.++|+|+|.+.|+
T Consensus 73 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 73 DRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 7766 699999999999999854456679999986554556899999999885
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=1.8e-20 Score=161.04 Aligned_cols=120 Identities=19% Similarity=0.301 Sum_probs=101.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL 135 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v 135 (430)
.|+|+|++|++|+..+..+..||||++.+.+. ..++|+++++ +.||+|||+|.|.+......|.++| +|++.+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~--~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v----~D~d~~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGK--TVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKV----FDYDRG 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCE--EEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEE----EeCCCC
Confidence 38999999999999999999999999999652 5789999987 7999999999999987555566655 888887
Q ss_pred -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
+|++||.+.++|.++.. ++..+.|++|..... ....|.|+|.++|.|
T Consensus 74 ~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 LTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred CCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence 79999999999999997 566788999964321 246899999999976
No 5
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.85 E-value=1.6e-20 Score=160.81 Aligned_cols=117 Identities=22% Similarity=0.384 Sum_probs=98.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|+|+|++|++|++.+..++.||||++++.+.+..++||+++++ +.||+|||+|.|.+... ...|+++| +|++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v----~d~d~ 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTV----MDEDY 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEE----EECCC
Confidence 38999999999999998999999999999765557889999997 69999999999999863 23455554 88877
Q ss_pred ccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112 135 LEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 135 v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
++|++||++.++|.++.. +.....||+|.. .++|.|++++.+.
T Consensus 76 ~~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~-----~~~g~l~~~~~~~ 118 (119)
T cd04036 76 VMDDHLGTVLFDVSKLKL-GEKVRVTFSLNP-----QGKEELEVEFLLE 118 (119)
T ss_pred CCCcccEEEEEEHHHCCC-CCcEEEEEECCC-----CCCceEEEEEEee
Confidence 789999999999999987 577889999963 3589999988764
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.4e-20 Score=162.96 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=94.2
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC------CCceEEEEEEEEe
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV------ESSLKCEIFMMSR 130 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~------d~~LkleV~v~v~ 130 (430)
|+|+|++|+||+..+..|.+||||+|++.. .++||+++++ +.||+|||+|.|.|... ...|.++ ++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~---~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~----v~ 72 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK---EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLT----VM 72 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC---eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEE----EE
Confidence 589999999999999999999999999964 6889999998 69999999999999762 2334444 48
Q ss_pred ecccc-cCceeEEEEEeCcccccc-CceeeEEEEccCCCCC-CCCCcEEEEEEE
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSLSSTDLF-HSPAGFVQLSLA 181 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~Lss~dl~-~~p~G~I~LsLs 181 (430)
|++.+ .|++||.+.|+|.++... +.....||+|...... .+.+|+|+|+++
T Consensus 73 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 73 HRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 88877 699999999999999832 4556799999743221 235799999873
No 7
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.84 E-value=3.7e-20 Score=168.29 Aligned_cols=123 Identities=22% Similarity=0.382 Sum_probs=100.8
Q ss_pred cceEEEEEEEeccCCCCCC------------------------------CCCCCCcEEEEEEeCCCCCeEEeeeecCCCC
Q 014112 53 FIGVLEVYIHQARDIHNIC------------------------------IYHKQDVYAKLCLTSDPENTVSTNIINGGGR 102 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~d------------------------------i~gk~DPYVkVsL~~~p~~k~KTkVikngG~ 102 (430)
.+|+|+|+|++|++|+++| ..|.+||||+|++.+. +..||+++++ +.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~--~~~rT~v~~~-~~ 81 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA--RVARTRVIEN-SE 81 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe--EeeEEEEeCC-CC
Confidence 4799999999999999987 3467899999999753 4579999987 69
Q ss_pred CCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCC-CCCcEEEEEEE
Q 014112 103 NPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFH-SPAGFVQLSLA 181 (430)
Q Consensus 103 NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~-~p~G~I~LsLs 181 (430)
||+|||+|.|.+......|.++| +|.+.+++++||.+.+||.++.. ++..+.||+|......+ .+.|.|+|+++
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V----~d~d~~~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTV----KDNDVVGAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEE----EeCCCcCCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 99999999999987554555544 88888888999999999999986 56778999997543222 34689999999
Q ss_pred EE
Q 014112 182 YA 183 (430)
Q Consensus 182 f~ 183 (430)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
No 8
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=2.8e-20 Score=168.00 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=102.2
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|+|+|++|+||+..+.+|++||||+|+|.+ +++||+++.+++.||+|||+|.|.+.+. ...+.++| +|++.
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V----~d~~~ 73 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSV----EDRVG 73 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC---EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEE----EEecC
Confidence 4899999999999999999999999999975 6889999987679999999999999763 23444444 77776
Q ss_pred c-cCceeEEEEEeCcccccc---CceeeEEEEccCCCC------CCCCCcEEEEEEEEEccCC
Q 014112 135 L-EDQLLGFTLVPLSEVLVK---NGKLEKEFSLSSTDL------FHSPAGFVQLSLAYAGASP 187 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~~---~~~l~~~f~Lss~dl------~~~p~G~I~LsLsf~p~~p 187 (430)
+ +|++||.+.|||.++..+ +....+||+|..... ..+.+|+|+|.|+|.+.+.
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 6 799999999999999753 234679999975431 1246799999999998874
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=3.5e-20 Score=163.48 Aligned_cols=114 Identities=20% Similarity=0.166 Sum_probs=94.9
Q ss_pred EEEEEEEeccC---CCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112 56 VLEVYIHQARD---IHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK 132 (430)
Q Consensus 56 ~L~VtVisArn---Lkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De 132 (430)
.|+|+|++|+| |+..+..|.+||||+|.+++ +++||+++++ +.||+|||+|.|.+.+....|.++| +|+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~---~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V----~d~ 72 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGV----FDN 72 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC---EEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEE----EEC
Confidence 48999999999 89999999999999999965 6889999997 7999999999999987555555555 777
Q ss_pred ccc-------cCceeEEEEEeCccccccCceeeEEEEccCCCCC-CCCCcEEEE
Q 014112 133 NYL-------EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-HSPAGFVQL 178 (430)
Q Consensus 133 d~v-------~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-~~p~G~I~L 178 (430)
+.+ +|++||++.|+|..+.. +.....||+|...+.. .++.|.|++
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLED-DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccC-CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 665 79999999999999987 5778899999754422 346787765
No 10
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.4e-19 Score=158.45 Aligned_cols=106 Identities=17% Similarity=0.268 Sum_probs=84.5
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeC----CCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTS----DPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV 131 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~----~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D 131 (430)
.|+|+|++|+||+..+ .|.+||||+|+|.+ ...++++|+++++ +.||+|||+|.|.|...+..-...|.+.++|
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 3899999999999887 49999999999954 2234679999976 7999999999999985322111224445588
Q ss_pred cccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
++.. .|++||.+.|||+++.. ++....|++|.
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~-~~~~~~w~~L~ 111 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQ-AGSCACWLPLG 111 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcC-CCcEEEEEECc
Confidence 8766 59999999999999997 56778999995
No 11
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.82 E-value=7.3e-20 Score=157.57 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=95.5
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-----CCceEEEEEEEEe
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-----ESSLKCEIFMMSR 130 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-----d~~LkleV~v~v~ 130 (430)
+|+|+|++|++|++.+.++++||||+|++.+. .+++|+++.+++.||+|||+|+|.+... ...|.++| +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v----~ 74 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEV----Y 74 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEE----E
Confidence 58999999999999999999999999999763 5889999987789999999999999875 23455544 8
Q ss_pred ecccc-cCceeEEEEEeCccccccCce----eeEEEEccCCCCCCCCCcEEEE
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVKNGK----LEKEFSLSSTDLFHSPAGFVQL 178 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~~~~----l~~~f~Lss~dl~~~p~G~I~L 178 (430)
|++.+ .|++||.+.|+|.++..+... ...||+|.... ++++|.|+|
T Consensus 75 d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 75 CERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred ECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 88875 799999999999999975321 35799997544 678999875
No 12
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=1.6e-19 Score=156.75 Aligned_cols=123 Identities=27% Similarity=0.358 Sum_probs=99.9
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV 131 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D 131 (430)
+|+|+|++|+||+..+..+..||||+|.+.+.. ..+++|+++++ +.||+|||+|.|.+......|.++| +|
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v----~d 75 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEV----FD 75 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEE----EE
Confidence 489999999999999999999999999997641 12679999987 7999999999999976545555554 78
Q ss_pred cccc-cCceeEEEEEeCccccccCc-----eeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLVKNG-----KLEKEFSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~~~~-----~l~~~f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
++.+ +|++||.+.++|.++..+.. -..+||+|..........|.|+|++.|.
T Consensus 76 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 76 ENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 8877 69999999999999997422 2358999975433345799999999984
No 13
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.81 E-value=3.1e-19 Score=151.69 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=98.4
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~ 134 (430)
|.|+|+|++|+||+..+..+.+||||+|.+.+ ..++|+++++ +.||+|||+|.|.+......|.++| +|++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v----~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN---ARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTV----YDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC---EeeecceecC-CcCCccCcEEEEEecCcCCEEEEEE----EECCC
Confidence 68999999999999999999999999999965 4689999987 7999999999999976545555555 77776
Q ss_pred c-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
. .|++||.+.++|.++..+ . ..||.|.........+|.|.|+++|
T Consensus 73 ~~~~~~iG~~~~~l~~~~~~-~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIKNG-E--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCCceeeEEEEEHHHCCCC-C--ceEEECcccCCCCceeeEEEEEEEe
Confidence 5 799999999999998752 2 5799997554444579999999987
No 14
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.81 E-value=4.4e-19 Score=154.66 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=95.0
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEEee
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMSRV 131 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v~D 131 (430)
....|+|+|++|+||+.. +..||||+|+|.+. +..||++ ++ +.||+|||+|.|.+...+ ..+.+ .++|
T Consensus 2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~--~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v----~v~d 70 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNEV--KVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTI----SLSN 70 (126)
T ss_pred ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECCE--eEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEE----EEEE
Confidence 356899999999999874 46899999999642 4578997 44 699999999999876532 23443 3477
Q ss_pred cccc-cCceeEEEEEeCccccccCceeeEEEEccCCCC-CCCCCcEEEEEEEEEcc
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL-FHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl-~~~p~G~I~LsLsf~p~ 185 (430)
.+.. +|++||.+.|||.++.. ++..+.||+|..... .....|.|+|+|+|.+.
T Consensus 71 ~~~~~~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 71 KAKRSKDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 7766 79999999999999987 577789999975432 12457999999999875
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=3.2e-19 Score=152.02 Aligned_cols=121 Identities=26% Similarity=0.330 Sum_probs=97.3
Q ss_pred ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112 54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK 132 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De 132 (430)
.|.|+|+|++|+||++.+.. +..||||++++.+. ...++|+++++ +.||+|||.|.|.+......|.++| +|+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v----~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTV----YDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEE----Eec
Confidence 48999999999999977654 67999999999763 36889999987 7999999999999986455666665 777
Q ss_pred ccc-cCceeEEEEEeCccccccCceee-EEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 133 NYL-EDQLLGFTLVPLSEVLVKNGKLE-KEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 133 d~v-~DdlIG~a~VPLsdLl~~~~~l~-~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
+.. +|++||.+.++|.++..+ +..+ .++.|.. .++++|.|+++|+|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~-~~~~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQN-PEQENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccC-ccccCcchhhhc---CCccceEEEEEEEeCC
Confidence 766 799999999999999974 4433 3444432 2457999999999986
No 16
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=4e-19 Score=150.88 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=97.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|+|+|++|+||+..+..+..||||++++.+ .+++|+++++ +.||+|||+|.|.+... ...|.++| +|++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v----~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN---EKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEV----WDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC---EeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEE----EECCC
Confidence 4899999999999999999999999999964 6889999987 79999999999999874 44556555 78887
Q ss_pred c-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
+ .|++||.+.++|.++.. ++....||+|.. .+|+|+|.+.|.+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~------~~G~~~~~~~~~~ 116 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPR-EQTHSLELELED------GEGSLLLLLTLTG 116 (116)
T ss_pred CCCCCeEEEEEEeHHHCCC-CCceEEEEEccC------CCcEEEEEEEecC
Confidence 6 79999999999999986 567789999952 3699999999863
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=5.2e-19 Score=153.55 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=95.9
Q ss_pred EEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc
Q 014112 57 LEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL 135 (430)
Q Consensus 57 L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v 135 (430)
|.|+|++|+||+..+ ..|..||||+|.+... ..+||+++++ +.||+|||+|.|.|......|.+.| +|.+.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~--~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v----~d~~~~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE--EVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYI----YDRDVL 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCc--cEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEE----EECCCC
Confidence 789999999999874 4578999999999543 4789999987 7999999999999986434444444 777777
Q ss_pred -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
+|++||.+.++|+++.. ++..+.||+|......+..+|+|+|+++|
T Consensus 75 ~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 79999999999999986 56678999997543333458999999875
No 18
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=5.6e-19 Score=156.73 Aligned_cols=119 Identities=25% Similarity=0.417 Sum_probs=98.8
Q ss_pred CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEE
Q 014112 51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMS 129 (430)
Q Consensus 51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v 129 (430)
....|.|+|+|++|++|++.+..+.+||||++++.. ..+||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V---- 82 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITV---- 82 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccCC-CCCCccCceEEEEecCccCCEEEEEE----
Confidence 456899999999999999999999999999999964 6899999997 79999999999999763 34566665
Q ss_pred eecccc-cCceeEEEEEeCcccccc----CceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVK----NGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~----~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
+|++.+ .|++||.+.++|.++... .+...+|..|. ...+|+|+|++.|
T Consensus 83 ~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~~~g~i~l~~~~ 135 (136)
T cd08375 83 FDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EVPTGEVVVKLDL 135 (136)
T ss_pred EECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cccceeEEEEEEe
Confidence 888877 699999999999999962 13344666664 2358999999987
No 19
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=4.5e-19 Score=150.50 Aligned_cols=114 Identities=25% Similarity=0.337 Sum_probs=95.9
Q ss_pred eEEEEEEEeccCCCCCCC------CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICI------YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFM 127 (430)
Q Consensus 55 g~L~VtVisArnLkn~di------~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v 127 (430)
|.|+|+|++|+||+..+. .+..||||++.+.+ ..++|+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v-- 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIEL-- 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEE--
Confidence 679999999999998875 36899999999975 6899999987 79999999999999763 34555555
Q ss_pred EEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 128 MSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 128 ~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
+|++...|++||.+.++|.++.. ++..+.||+|.. ..+|+|+|.++|
T Consensus 75 --~d~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~-----~~~G~~~~~~~~ 121 (121)
T cd08391 75 --FDEDPDKDDFLGRLSIDLGSVEK-KGFIDEWLPLED-----VKSGRLHLKLEW 121 (121)
T ss_pred --EecCCCCCCcEEEEEEEHHHhcc-cCccceEEECcC-----CCCceEEEEEeC
Confidence 77776689999999999999986 566789999963 258999999876
No 20
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=8.9e-19 Score=151.92 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=98.6
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL- 135 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v- 135 (430)
|.|+|++|+||+. ..+.+||||++++.. +..++||+++++ +.||+|||+|.|.+......|.++| +|++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v----~d~~~~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEV----YDNGKKS 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEE----EECCCCC
Confidence 6899999999998 779999999999963 336789999997 6999999999999975444555555 788776
Q ss_pred cCceeEEEEEeCccccccCceeeEEEEccCCCC-CCCCCcEEEEEEEEEccC
Q 014112 136 EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL-FHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 136 ~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl-~~~p~G~I~LsLsf~p~~ 186 (430)
+|++||.+.++|.++.. +.....||+|..... .....|.|+|++.|.+..
T Consensus 73 ~~~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 73 DSKFLGLAIVPFDELRK-NPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCceEEEEEEeHHHhcc-CCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 69999999999999997 466678999975422 134699999999997654
No 21
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.80 E-value=1.2e-18 Score=151.57 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=100.0
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK 132 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De 132 (430)
+++.|+|+|++|++|+..+.+|+.||||++++.+ +++||+++++ +.||+|||.|.|.+......|+++| +|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V----~d~ 72 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG---ESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQV----WNS 72 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC---EEEEeCccCC-CCCCcccceEEEEecCCCCEEEEEE----EEC
Confidence 4689999999999999999999999999999975 5899999987 7999999999999876555566665 788
Q ss_pred ccccCceeEEEEEeCccccccCceeeEEEEccC--CCCCCCCCcEEEEEEEEEcc
Q 014112 133 NYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSS--TDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 133 d~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss--~dl~~~p~G~I~LsLsf~p~ 185 (430)
+.+.|++||.+.++|.++.. ...++|+|.. ........|.|.|++.+.+-
T Consensus 73 ~~~~d~~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 73 NLLCDEFLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCCCceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 87789999999999987642 3347788842 22335679999999987653
No 22
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.80 E-value=1.2e-18 Score=152.05 Aligned_cols=117 Identities=17% Similarity=0.314 Sum_probs=97.3
Q ss_pred ceEEEEEEEeccCCCCCCCC----------CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEE
Q 014112 54 IGVLEVYIHQARDIHNICIY----------HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKC 123 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~----------gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~Lkl 123 (430)
.|.|+|+|++|++|++.+.. +..||||+|++.+. +..+|+++++ +.||+|||+|.|.|.. ...|.+
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~--~~~kT~~~~~-t~~P~Wne~f~~~v~~-~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT--HIGKTSTKPK-TNSPVWNEEFTTEVHN-GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE--EEeEEeEcCC-CCCCCcceeEEEEcCC-CCEEEE
Confidence 58999999999999988863 57999999999753 4579999887 7999999999999974 345555
Q ss_pred EEEEEEeecccc-cCceeEEEEEeCcccccc-CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
.| +|++.+ .|++||.+.++|.++..+ ++..+.||+|. ++|.|+|.+.|.+.
T Consensus 79 ~v----~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-------~~G~l~l~~~~~~~ 131 (132)
T cd04014 79 TV----FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-------PQGKLHVKIELKGS 131 (132)
T ss_pred EE----EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-------CCcEEEEEEEEecC
Confidence 54 777666 689999999999999974 35668999995 68999999999874
No 23
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=7.5e-19 Score=152.56 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=94.7
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~ 134 (430)
.|+|+|++|+||+.. .+||||++++.. ++.||+++++ +.||+|||+|.|.+.. ....|.++| +|++.
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~---~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v----~d~d~ 68 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN---YKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSV----WDKDK 68 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC---ccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEE----EeCCC
Confidence 489999999999987 789999999975 6889999987 7999999999999876 345566666 78877
Q ss_pred ccCceeEEEEEeCccccccC----ceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112 135 LEDQLLGFTLVPLSEVLVKN----GKLEKEFSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 135 v~DdlIG~a~VPLsdLl~~~----~~l~~~f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
++|++||.+.++|+++.... ....+||+|..... ..-.|+|+|+|.|.
T Consensus 69 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 69 AKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred CcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 78999999999999997632 12458999975432 34689999999985
No 24
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1e-18 Score=150.02 Aligned_cols=120 Identities=26% Similarity=0.305 Sum_probs=98.4
Q ss_pred eEEEEEEEeccCCCCCCC--CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEee
Q 014112 55 GVLEVYIHQARDIHNICI--YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRV 131 (430)
Q Consensus 55 g~L~VtVisArnLkn~di--~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~D 131 (430)
|.|+|+|++|+||+..+. .+.+||||+|.+.. .+++|+++++ +.||+|||+|.|.+.. ....|.++| +|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v----~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA---QRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLIL----WD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC---EEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEE----EE
Confidence 689999999999999988 89999999999954 6889999987 7999999999999986 344555555 78
Q ss_pred cccc-cCceeEEEEEeCcccccc--CceeeEEEEccCCC--CCCCCCcEEEEEEEE
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLVK--NGKLEKEFSLSSTD--LFHSPAGFVQLSLAY 182 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~~--~~~l~~~f~Lss~d--l~~~p~G~I~LsLsf 182 (430)
++.. .|++||.+.++|.++... .+....||.|.... .....+|+|+|.++|
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7777 799999999999999842 24457899997442 112469999999976
No 25
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.79 E-value=1.1e-18 Score=150.88 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=96.8
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL- 135 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v- 135 (430)
|.|+|++|++|++.+..|++||||++.+.+. ...||+++++ +.||+|||.|.|.+......|.++| +|++.+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v----~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYV----LDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCE--eeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEE----EECCCCC
Confidence 8999999999999999999999999999642 3579999987 7999999999999976445555554 787776
Q ss_pred cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEE
Q 014112 136 EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLA 181 (430)
Q Consensus 136 ~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLs 181 (430)
.|++||.+.+++.++...++..+.|++|...+..+...|+|+|.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 6999999999999987533457799999754433446899999875
No 26
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.79 E-value=2.3e-18 Score=148.14 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=98.5
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecc
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKN 133 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded 133 (430)
+.|+|+|++|++|+..+..+..||||+|++...+...+||+++++ +.||+|||+|.|.+... ...|.++| +|++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v----~d~d 75 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATV----WDRS 75 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEE----EECC
Confidence 369999999999999999999999999998654345789999987 69999999999999873 34555555 7877
Q ss_pred cc-cCceeEEEEEeCcccccc--CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 134 YL-EDQLLGFTLVPLSEVLVK--NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 134 ~v-~DdlIG~a~VPLsdLl~~--~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
.+ .|++||.+.++|.++... +.....||+|. ++|+|+|.|.|...
T Consensus 76 ~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-------~~g~i~l~~~~~~~ 123 (126)
T cd04043 76 FVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-------TQGRLLLRVSMEGE 123 (126)
T ss_pred CCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-------CCCeEEEEEEEeee
Confidence 76 799999999999987653 23556899995 58999999998764
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=6.5e-19 Score=153.14 Aligned_cols=103 Identities=27% Similarity=0.407 Sum_probs=86.2
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEe-Cc---CCCceEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNV-KT---VESSLKCEIFM 127 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V-~~---~d~~LkleV~v 127 (430)
.+.|+|+|++|+||+..+ .+.+||||+|+|.+++ ..++||+++++ +.||+|||+|.|.+ .. ....|+++|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V-- 87 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSV-- 87 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEE--
Confidence 478999999999999999 8999999999998764 35789999997 69999999999997 32 123455555
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|++.+ +|++||++.|+|+++.. ++....||+|
T Consensus 88 --~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L 121 (122)
T cd08381 88 --WSHDSLVENEFLGGVCIPLKKLDL-SQETEKWYPL 121 (122)
T ss_pred --EeCCCCcCCcEEEEEEEecccccc-CCCccceEEC
Confidence 788776 69999999999999997 4556789987
No 28
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=3.9e-18 Score=148.83 Aligned_cols=105 Identities=22% Similarity=0.315 Sum_probs=87.0
Q ss_pred cceEEEEEEEeccCCCCCCC-CCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICI-YHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF 126 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di-~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~ 126 (430)
..+.|.|+|++|+||+..+. .+..||||+|++.++. ..++||+++++ +.||+|||+|.|.|... ...|.++|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V- 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSV- 90 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEE-
Confidence 46889999999999998765 5899999999997654 34789999887 79999999999999762 22455544
Q ss_pred EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ ++++||.+.|+|.++.. .+..+.||+|
T Consensus 91 ---~d~~~~~~~~~lG~~~i~l~~~~~-~~~~~~w~~l 124 (125)
T cd04029 91 ---WHYDRFGRNTFLGEVEIPLDSWNF-DSQHEECLPL 124 (125)
T ss_pred ---EECCCCCCCcEEEEEEEeCCcccc-cCCcccEEEC
Confidence 777766 79999999999999987 4667899998
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=1.7e-18 Score=151.72 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=81.2
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC-CCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD-PENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV 131 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~-p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D 131 (430)
..+.|+|+|++|+||+ ..|.+||||+++|.+. ...+++|++.++ +.||+|||+|.|.|+..+. ....|.+.++|
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l-~~~tL~~~V~d 86 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES-LDGTLTLTLRC 86 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh-CCcEEEEEEEe
Confidence 3589999999999999 3467999999999753 346889999987 7999999999999987322 22334455588
Q ss_pred cccc-cCceeEEEEEeCccccccCceeeEEEE
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFS 162 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~ 162 (430)
.|.+ ++++||++.++|+++..+ ...++|..
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~-~~~~~W~~ 117 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMM-LGAAQWVD 117 (118)
T ss_pred CCCCCCCceEEEEEEccccccCC-ccccchhc
Confidence 8887 799999999999998542 33345544
No 30
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=3.1e-18 Score=149.11 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=86.8
Q ss_pred ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM 127 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v 127 (430)
.+.|+|+|++|+||+..+.. |..||||+++|.+.. ..++||+++++ +.||+|||+|.|.|... ...|.++|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V-- 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSV-- 90 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEE--
Confidence 47899999999999999876 899999999998654 34689999987 69999999999998752 23445544
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ ++++||.+.|||.++.. .+....||+|
T Consensus 91 --~d~~~~~~~~~iG~~~i~L~~~~~-~~~~~~W~~L 124 (125)
T cd08393 91 --WHRDSLGRNSFLGEVEVDLGSWDW-SNTQPTWYPL 124 (125)
T ss_pred --EeCCCCCCCcEeEEEEEecCcccc-CCCCcceEEC
Confidence 887776 79999999999999987 4566789987
No 31
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.76 E-value=4.9e-18 Score=146.24 Aligned_cols=106 Identities=26% Similarity=0.356 Sum_probs=90.2
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS 129 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v 129 (430)
..+.|.|+|++|+||+..+..+..||||+|.+.+.....+||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V---- 88 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLL---- 88 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEE----
Confidence 35899999999999999999999999999999755456899999987 79999999999998863 23455555
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.+ +|++||.+.|+|.++.. ++....||.|.
T Consensus 89 ~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08387 89 YDFDQFSRDECIGVVELPLAEVDL-SEKLDLWRKIQ 123 (124)
T ss_pred EECCCCCCCceeEEEEEecccccC-CCCcceEEECc
Confidence 788777 69999999999999997 45778999984
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=6.1e-18 Score=145.42 Aligned_cols=106 Identities=26% Similarity=0.284 Sum_probs=89.2
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS 129 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v 129 (430)
..+.|+|+|++|+||+..+..+..||||+|++.+....++||+++++ +.||+|||+|.|.+... ...|+++|
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V---- 88 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSV---- 88 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEE----
Confidence 35789999999999999999999999999999876556889999987 79999999999998752 23455555
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.+ +|++||.+.++|.++.. +...++||.|.
T Consensus 89 ~d~d~~~~~~~lG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08385 89 YDFDRFSKHDLIGEVRVPLLTVDL-GHVTEEWRDLE 123 (124)
T ss_pred EeCCCCCCCceeEEEEEecCcccC-CCCcceEEEcc
Confidence 787776 68999999999999976 45667999984
No 33
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=3.6e-18 Score=148.23 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=85.0
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV 131 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D 131 (430)
.+.|+|+|++|+||+..+ .+..||||+++|.+.+. .++||+++++ +.||+|||+|.|.+...+.. -.+.+.+++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~--~~l~v~V~~ 86 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQ--KRLLVTVWN 86 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhC--CEEEEEEEC
Confidence 478999999999999988 88999999999987653 4779999987 79999999999999763211 113344577
Q ss_pred cccc--cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 132 KNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 132 ed~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
++.. ++++||.+.|||.++.. +....+||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~~-~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIVN-QKEISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhcc-CccccceEeC
Confidence 7655 47999999999999985 5667899976
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=5.2e-18 Score=149.28 Aligned_cols=106 Identities=27% Similarity=0.375 Sum_probs=86.7
Q ss_pred ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM 127 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v 127 (430)
.+.|+|+|++|+||+..+.. +..||||+|+|.++. ..++||+++++ +.||+|||+|.|.|... ...|.+.|
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V-- 90 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSV-- 90 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEE--
Confidence 47999999999999998875 999999999998765 34889999987 79999999999998763 22444444
Q ss_pred EEeecccc-cCceeEEEEEeCccccccC--ceeeEEEEcc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKN--GKLEKEFSLS 164 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~--~~l~~~f~Ls 164 (430)
++.+.+ ++++||++.|+|+++...+ ....+||+|+
T Consensus 91 --~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 91 --WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred --EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 777766 7999999999999997642 2556899983
No 35
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.76 E-value=7e-18 Score=146.16 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=91.4
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccccc
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLE 136 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~ 136 (430)
|+|+|++|++|+..+.++..||||+|++.+ .+.+||+++++ +.||+|||+|.|.+.. ...|.++| +|++.+.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V----~d~~~~~ 73 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQV----FDQKKFK 73 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEE----EECCCCC
Confidence 899999999999999999999999999964 36899999987 7999999999999976 44566655 7777662
Q ss_pred ---CceeEEEEEeCccccccCceeeEEEEccCCCC--CCCCCcEEEEEE
Q 014112 137 ---DQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL--FHSPAGFVQLSL 180 (430)
Q Consensus 137 ---DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl--~~~p~G~I~LsL 180 (430)
|++||.+.++|.++.........||+|..... .....|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 58999999999999864333457999843221 223467777765
No 36
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=4.8e-18 Score=142.99 Aligned_cols=100 Identities=24% Similarity=0.394 Sum_probs=85.0
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|.|+|++|+||+..+..+.+||||+|.+.+ +++||+++++ +.||+|||+|.|.|... ...|.++| +|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v----~d~~~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEV----KDDKT 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEE----EECCC
Confidence 4899999999999999889999999999975 6899999986 79999999999999873 34455555 77765
Q ss_pred ccCceeEEEEEeCccccccC-ceeeEEEEccC
Q 014112 135 LEDQLLGFTLVPLSEVLVKN-GKLEKEFSLSS 165 (430)
Q Consensus 135 v~DdlIG~a~VPLsdLl~~~-~~l~~~f~Lss 165 (430)
|++||.+.|+|.++.... ...++||+|..
T Consensus 73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred --CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 899999999999998742 35789999963
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=9.5e-18 Score=144.27 Aligned_cols=116 Identities=17% Similarity=0.248 Sum_probs=94.7
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|+|+|++|++|+..+..+.+||||+|++.+ .+++|+++++ +.||+|||+|.|.+... ...|.++| +|++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v----~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEV----WDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC---EEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEE----EECCC
Confidence 4899999999999999889999999999964 5789999987 79999999999999874 33456655 77776
Q ss_pred c-cCceeEEEEEeCccccccCceeeEEEEccCCCC----CCCCCcEEEEEE
Q 014112 135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL----FHSPAGFVQLSL 180 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl----~~~p~G~I~LsL 180 (430)
+ .|++||.+.++|.++.. ++....||.|..... .+...|.|+|.|
T Consensus 73 ~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQ-AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCcEeEEEEEEHHHccc-CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 6 68999999999999986 456678999864221 124678888876
No 38
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=6.7e-18 Score=152.70 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=86.7
Q ss_pred ceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112 54 IGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR 130 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~ 130 (430)
.+.|+|+|++|+||...+ ..+..||||+++|.++.. .++||+++++ +.||+|||+|.|.|......|.++| +
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V----~ 102 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVIV----W 102 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEEE----E
Confidence 478999999999998764 568899999999987653 4889999987 7999999999999984344566655 5
Q ss_pred -ecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 131 -VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 131 -Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+.+.+ ++++||.+.|+|+++.. ++....||.|.
T Consensus 103 ~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~Wy~L~ 137 (146)
T cd04028 103 GDYGRMDKKVFMGVAQILLDDLDL-SNLVIGWYKLF 137 (146)
T ss_pred eCCCCCCCCceEEEEEEEcccccC-CCCceeEEecC
Confidence 45555 69999999999999976 45668999996
No 39
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.76 E-value=3e-18 Score=157.67 Aligned_cols=95 Identities=24% Similarity=0.418 Sum_probs=87.2
Q ss_pred CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112 51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR 130 (430)
Q Consensus 51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~ 130 (430)
..+.|.|+|+|++|.||...|+.+++||||.|.+++ +++||+++++ +.||+|||.|.|.|.+....|+++| |
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~---q~lkT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~V----y 73 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN---QKLKTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTV----Y 73 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECC---eeeeeeeecC-CCCCcccceEEEEecCCCceEEEEE----E
Confidence 357899999999999999999889999999999987 7999999987 6999999999999999877777776 9
Q ss_pred ecccc-cCceeEEEEEeCcccccc
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~ 153 (430)
|+|.+ .||++|.|.|||..++..
T Consensus 74 D~D~fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 74 DKDTFSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred eCCCCCcccccceeeeccHHHHHH
Confidence 99998 799999999999999973
No 40
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=6.3e-18 Score=148.47 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=87.4
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIF 126 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~ 126 (430)
..+.|+|+|++|+||+..+..+..||||+++|.++. ..++||+++++ +.||+|||+|.|.|...+ ..|.+.
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~-- 88 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVD-- 88 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEE--
Confidence 357899999999999998888889999999999876 35899999987 799999999999998632 234444
Q ss_pred EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+++.+.+ ++++||.+.|+|.++...++...+||.|
T Consensus 89 --V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 --VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred --EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 4777766 6999999999999996644456788875
No 41
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2.7e-17 Score=142.39 Aligned_cols=116 Identities=19% Similarity=0.320 Sum_probs=95.7
Q ss_pred EEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEEeecccc-c
Q 014112 61 IHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMSRVKNYL-E 136 (430)
Q Consensus 61 VisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v~Ded~v-~ 136 (430)
|++|+||++ .+++.||||+|++.+ .+++|+++++ +.||+|||+|.|.+... ...|.++| +|.+.+ .
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~---~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v----~d~~~~~~ 71 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG---VKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVV----KDYEKVGR 71 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC---EeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEE----EECCCCCC
Confidence 799999999 789999999999965 5789999987 69999999999999753 33455555 887776 6
Q ss_pred CceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCCC
Q 014112 137 DQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPD 188 (430)
Q Consensus 137 DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p~ 188 (430)
|++||.+.++|.++.. ++....|++|..... ....|+|+|+++|.|..+.
T Consensus 72 d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~-~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 72 NRLIGSATVSLQDLVS-EGLLEVTEPLLDSNG-RPTGATISLEVSYQPPDGA 121 (127)
T ss_pred CceEEEEEEEhhHccc-CCceEEEEeCcCCCC-CcccEEEEEEEEEeCCCCc
Confidence 8999999999999997 577788999964332 2247999999999998754
No 42
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.74 E-value=9.6e-18 Score=144.43 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=87.3
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEEEEe
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFMMSR 130 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v~v~ 130 (430)
|.|+|+|++|++|++.+.+++.||||+|++.. ..++|+++++++.||+|||+|.|.+... ...|.++| +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V----~ 73 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRI----M 73 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEE----E
Confidence 68999999999999999999999999999964 5789999886689999999999999875 23444444 8
Q ss_pred ecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
|.+.+ +|++||.+.++|.+++. ++..+.||.|.
T Consensus 74 d~~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~l~ 107 (124)
T cd04049 74 DKDNFSDDDFIGEATIHLKGLFE-EGVEPGTAELV 107 (124)
T ss_pred ECccCCCCCeEEEEEEEhHHhhh-CCCCcCceEee
Confidence 88776 79999999999999997 56678899885
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.74 E-value=6.8e-18 Score=143.58 Aligned_cols=101 Identities=26% Similarity=0.310 Sum_probs=84.3
Q ss_pred eEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFMMS 129 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v~v 129 (430)
|+|+|+|++|++|+..+.. ++.||||+|++.+.....++|+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V---- 75 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRL---- 75 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEE----
Confidence 6899999999999999988 99999999999765446789999997 79999999999988653 23455555
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|++.+ .|++||.+.++|.+|... .+|+++.
T Consensus 76 ~d~d~~~~dd~lG~~~i~l~~l~~~----~~~~~~~ 107 (111)
T cd04041 76 WDSDRFTADDRLGRVEIDLKELIED----RNWMGRR 107 (111)
T ss_pred EeCCCCCCCCcceEEEEEHHHHhcC----CCCCccc
Confidence 888877 699999999999999852 4577763
No 44
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=2.1e-17 Score=142.13 Aligned_cols=104 Identities=24% Similarity=0.374 Sum_probs=86.6
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~ 128 (430)
.+.|+|+|++|+||+..+..+..||||+|++.+.. ..++||+++++ +.||+|||+|.|.+... ...|.+.|
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v--- 90 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAV--- 90 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEE---
Confidence 47899999999999999999999999999997643 36889999997 69999999999998752 23344444
Q ss_pred Eeecccc---cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 129 SRVKNYL---EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 129 v~Ded~v---~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ +|++||.+.++|.++.. ++....||.|
T Consensus 91 -~~~~~~~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L 126 (127)
T cd04030 91 -KNSKSFLSREKKLLGQVLIDLSDLDL-SKGFTQWYDL 126 (127)
T ss_pred -EECCcccCCCCceEEEEEEecccccc-cCCccceEEC
Confidence 776653 69999999999999976 4667899988
No 45
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.73 E-value=2e-17 Score=144.92 Aligned_cols=105 Identities=25% Similarity=0.360 Sum_probs=85.4
Q ss_pred ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEE-EeCcC---CCceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKL-NVKTV---ESSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F-~V~~~---d~~LkleV~v~ 128 (430)
.+.|+|+|++|+||+..+.. +..||||+|+|.+...++.||+++++ +.||+|||+|.| .+... ...|+++|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V--- 90 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAV--- 90 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEE---
Confidence 47999999999999998887 89999999999876557889999987 799999999999 45532 22345544
Q ss_pred Eeecccc-cCceeEEEEEeCcccccc-CceeeEEEEc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSL 163 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~L 163 (430)
+|++.+ +|++||.+.|+|+++... ++.+..|.+|
T Consensus 91 -~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 -LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred -EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 777766 799999999999999764 3556777776
No 46
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=1.5e-17 Score=144.81 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=87.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEE-eCcC---CCceEEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN-VKTV---ESSLKCEIFMM 128 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~-V~~~---d~~LkleV~v~ 128 (430)
..+.|+|+|++|+||+..+..+..||||++.+.+...+++||+++++ .||+|||+|.|. +... +..|.+.
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~~---- 87 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRFR---- 87 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEEE----
Confidence 35789999999999999998889999999998777667899999763 999999999998 6542 2234444
Q ss_pred Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
++|.+.+ ++++||++.|+|+++.. ++....||+|.
T Consensus 88 V~~~~~~~~~~~lG~~~i~L~~l~~-~~~~~~w~~L~ 123 (124)
T cd08389 88 LYGVERMRKERLIGEKVVPLSQLNL-EGETTVWLTLE 123 (124)
T ss_pred EEECCCcccCceEEEEEEeccccCC-CCCceEEEeCC
Confidence 4887777 69999999999999987 56678999984
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=1.9e-17 Score=142.32 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=88.1
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM 127 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v 127 (430)
...+.|+|+|++|+||+..+..+..||||++.+.+...++.||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v-- 89 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQV-- 89 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEE--
Confidence 346789999999999999999999999999999655556889999987 79999999999985432 12345544
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|++.+ +|++||.+.++|+++.. ++....||.|.
T Consensus 90 --~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l~ 124 (125)
T cd08386 90 --LDYDRFSRNDPIGEVSLPLNKVDL-TEEQTFWKDLK 124 (125)
T ss_pred --EeCCCCcCCcEeeEEEEecccccC-CCCcceEEecC
Confidence 777766 68999999999999987 46678899883
No 48
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.6e-17 Score=140.65 Aligned_cols=105 Identities=24% Similarity=0.383 Sum_probs=86.5
Q ss_pred cceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF 126 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~ 126 (430)
..+.|+|+|++|+||+..+ ..+..||||+|++.+... .+.||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~v- 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQLSV- 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEEEEE-
Confidence 3578999999999999988 778999999999975432 5789999876 79999999999998863 22455544
Q ss_pred EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ ++++||.+.++|.++.. ++....||+|
T Consensus 90 ---~d~~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~l 123 (123)
T cd08521 90 ---WHHDRFGRNTFLGEVEIPLDSWDL-DSQQSEWYPL 123 (123)
T ss_pred ---EeCCCCcCCceeeEEEEecccccc-cCCCccEEEC
Confidence 777766 68999999999999976 4667889987
No 49
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=4.4e-17 Score=141.89 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=92.9
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc-
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY- 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~- 134 (430)
.|+|+|++|++|+..+..+..||||+|.+.. ..++|+++++ +.||+|||+|.|.+......|.++| +|.+.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v----~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK---TKKRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRV----WDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC---EeeecceecC-CCCCccceEEEEEecCCCCEEEEEE----EECCCC
Confidence 6899999999999999999999999999954 5789999987 7999999999999876445566655 55552
Q ss_pred -----------ccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEE
Q 014112 135 -----------LEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSL 180 (430)
Q Consensus 135 -----------v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsL 180 (430)
..|++||.+.++|.++.. ....||.|..+..+...+|+|+|.+
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~---~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLSG---EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHccC---CCCeEEECccCCCCCcEeEEEEEEC
Confidence 258999999999998752 3468999986554445789998874
No 50
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=6.8e-17 Score=146.15 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=83.4
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCc------------CCCce
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKT------------VESSL 121 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~------------~d~~L 121 (430)
.|+|+|++|+||.. ..|..||||+|.+.+.. ..++||+++++ +.||+|||+|.|.+.. .+..-
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence 38999999999998 56899999999998743 24789999987 7999999999999951 11110
Q ss_pred EEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112 122 KCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165 (430)
Q Consensus 122 kleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss 165 (430)
...|.+.+++++.+ .|++||.+.|||.++..+.+....||+|..
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 12344555888776 799999999999999873245678999963
No 51
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=3.2e-17 Score=139.24 Aligned_cols=100 Identities=20% Similarity=0.348 Sum_probs=84.6
Q ss_pred EEEEEEeccCCCCCCC-CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCee-cceEEEEeCcC---CCceEEEEEEEEee
Q 014112 57 LEVYIHQARDIHNICI-YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVF-NENLKLNVKTV---ESSLKCEIFMMSRV 131 (430)
Q Consensus 57 L~VtVisArnLkn~di-~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvW-NEtF~F~V~~~---d~~LkleV~v~v~D 131 (430)
|+|+|++|++|+..+. .+..||||++++.+ .++||+++++ +.||+| ||+|.|.+... +..|.++| +|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V----~d 72 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRV----MD 72 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEE----Ee
Confidence 6899999999999884 68899999999965 7899999987 699999 99999999863 23555555 88
Q ss_pred cccc-cCceeEEEEEeCcccccc--CceeeEEEEcc
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLVK--NGKLEKEFSLS 164 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~~--~~~l~~~f~Ls 164 (430)
++.+ +|++||.+.++|.++... +.....||+|.
T Consensus 73 ~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 73 HDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 8877 689999999999999973 34577999984
No 52
>PLN03008 Phospholipase D delta
Probab=99.72 E-value=5e-17 Score=178.58 Aligned_cols=128 Identities=13% Similarity=0.297 Sum_probs=104.6
Q ss_pred ccceEEEEEEEeccCCCCCCC------------------------------------------CCCCCcEEEEEEeCCCC
Q 014112 52 NFIGVLEVYIHQARDIHNICI------------------------------------------YHKQDVYAKLCLTSDPE 89 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di------------------------------------------~gk~DPYVkVsL~~~p~ 89 (430)
-.+|+|+|+|++|++|+++++ .+++||||+|.|+.+
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~-- 88 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA-- 88 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc--
Confidence 358999999999999987333 236699999999653
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCC
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF 169 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~ 169 (430)
+..||+|+++ +.||+|||+|+|.|.+....|.++| +|.|.+++++||.+.|||.+|.. +...+.|++|......
T Consensus 89 rv~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~V----kD~D~~gaD~IG~a~IPL~~L~~-Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 89 TLARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQV----KDDDVFGAQIIGTAKIPVRDIAS-GERISGWFPVLGASGK 162 (868)
T ss_pred ceeeEEeCCC-CCCCCcceeEEEEecCCCceEEEEE----EcCCccCCceeEEEEEEHHHcCC-CCceEEEEEccccCCC
Confidence 5779999987 6999999999999998555555544 99998988999999999999997 5778899999755433
Q ss_pred C-CCCcEEEEEEEEEccCC
Q 014112 170 H-SPAGFVQLSLAYAGASP 187 (430)
Q Consensus 170 ~-~p~G~I~LsLsf~p~~p 187 (430)
+ ++.|.|+|+|.|.|...
T Consensus 163 p~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCCCCcEEEEEEEEEEccc
Confidence 3 34689999999999643
No 53
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=5.3e-17 Score=144.05 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=82.5
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~ 134 (430)
+.|.|+|++||+|++.+. .||||+|.+.+ ++.+|+++++ .||+|||+|.|.+...+..|.++| +|++.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~---~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V----~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDK---FNTYVTLKVQN---VKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIEL----WNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCCCC---CCCeEEEEECC---EEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEE----EeCCC
Confidence 689999999999987663 48999999965 6889999864 699999999999987555566666 78887
Q ss_pred ccCceeEEEEEeCccccccCce-eeEEEEccC
Q 014112 135 LEDQLLGFTLVPLSEVLVKNGK-LEKEFSLSS 165 (430)
Q Consensus 135 v~DdlIG~a~VPLsdLl~~~~~-l~~~f~Lss 165 (430)
+.|++||.+.|||.++..+... ..+||+|..
T Consensus 70 ~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 70 IWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred cCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 8999999999999999975333 258999963
No 54
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=6.3e-17 Score=147.33 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=93.6
Q ss_pred Cccccchh---hh--ccCCCCccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----------------------
Q 014112 36 GTEANRKE---AV--MSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP---------------------- 88 (430)
Q Consensus 36 ~~~~~~~~---~~--~~~~~~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p---------------------- 88 (430)
+|+++-++ +. +... +.+.+.|+|+|++|+||.+.+..|.+||||+|.+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T cd08676 5 AFGVSPEEHEALLERVREA-EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83 (153)
T ss_pred hhCCCHHHHHHHHHHHHhc-CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccc
Confidence 56777666 32 3444 67899999999999999999999999999999996431
Q ss_pred ----CCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEc
Q 014112 89 ----ENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 89 ----~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
...++|+++++ +.||+|||+|.|.+... ...|.++| +|.+ |++||.+.++|.++.. .+ .+.||+|
T Consensus 84 ~~~~~~~~kT~v~~~-tlnP~WnE~F~f~v~~~~~~~L~i~V----~D~d---d~~IG~v~i~l~~l~~-~~-~d~W~~L 153 (153)
T cd08676 84 TVPAKSIKVTEVKPQ-TLNPVWNETFRFEVEDVSNDQLHLDI----WDHD---DDFLGCVNIPLKDLPS-CG-LDSWFKL 153 (153)
T ss_pred cccccccEecceecC-CCCCccccEEEEEeccCCCCEEEEEE----EecC---CCeEEEEEEEHHHhCC-CC-CCCeEeC
Confidence 12479999887 79999999999999763 33455555 7766 8999999999999984 33 5899987
No 55
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=1.3e-16 Score=140.23 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=93.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----------CCceEEEE
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----------ESSLKCEI 125 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----------d~~LkleV 125 (430)
.|+|+|++|++|+..+..|..||||+|.+.+ .++||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN---QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC---eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 6999999999999999999999999999964 6889999987 79999999999985431 12344544
Q ss_pred EEEEeecccc-cCceeEEEEE-eCcccccc--CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 126 FMMSRVKNYL-EDQLLGFTLV-PLSEVLVK--NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 126 ~v~v~Ded~v-~DdlIG~a~V-PLsdLl~~--~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
+|++.. +|++||++.+ |+..+... .....+||+|.... ..+|+|.|++++.+.
T Consensus 78 ----~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 78 ----FDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV 134 (135)
T ss_pred ----EeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence 777776 6899999986 66555431 23456899997432 469999999999764
No 56
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.71 E-value=1.6e-16 Score=134.45 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=85.0
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEEEEeecccc
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFMMSRVKNYL 135 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v~v~Ded~v 135 (430)
|+|+|++|+||+.. +.+||||++++.+. ..++|+++++ .||+|||+|.|.+...+. ...+ .+.+++.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~--~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l--~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQV--EVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTL--SFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCE--EeEecceEEC--CCCcccceEEEecCCccccEEEE--EEEEEecccC
Confidence 88999999999986 78999999999652 4679999875 999999999999987432 2233 3344666655
Q ss_pred -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
.+..+ +.++|..+.. ++..+.||+|...+......|+|+|.+.|
T Consensus 73 ~~~~~~--g~v~l~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 73 DRDIVI--GKVALSKLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CCeeEE--EEEEecCcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 34444 5566666665 46678999997554333458999999987
No 57
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=8.8e-17 Score=137.69 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=83.4
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM 127 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v 127 (430)
.+.|+|+|++|+||+..+..+..||||+|++.+.. ..++||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V-- 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTV-- 91 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEE--
Confidence 47899999999999999988999999999997643 25789999987 79999999999986442 23455555
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ +|++||.+.++|.+... .....||+|
T Consensus 92 --~d~~~~~~~~~iG~~~i~l~~~~~--~~~~~W~~L 124 (125)
T cd04031 92 --WDYDRDGENDFLGEVVIDLADALL--DDEPHWYPL 124 (125)
T ss_pred --EeCCCCCCCcEeeEEEEecccccc--cCCcceEEC
Confidence 887776 69999999999999443 223589988
No 58
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=1.4e-16 Score=136.39 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=87.8
Q ss_pred cceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMM 128 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~ 128 (430)
..+.|+|+|++|+||+..+ ..+..||||+|++.+......+|+++++ +.||+|||+|.|.+... ...|+++|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v--- 87 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSV--- 87 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEE---
Confidence 4578999999999999998 6889999999999755456789999987 79999999999998763 22455544
Q ss_pred Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.. ++++||.+.++|.++.. ......|++|.
T Consensus 88 -~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~w~~L~ 122 (123)
T cd08390 88 -YDVDRFSRHCIIGHVLFPLKDLDL-VKGGVVWRDLE 122 (123)
T ss_pred -EECCcCCCCcEEEEEEEeccceec-CCCceEEEeCC
Confidence 777766 69999999999999997 45567899983
No 59
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.70 E-value=3.8e-16 Score=133.80 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=93.5
Q ss_pred eEEEEEEEeccCCCCCC--CCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEEE
Q 014112 55 GVLEVYIHQARDIHNIC--IYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFMM 128 (430)
Q Consensus 55 g~L~VtVisArnLkn~d--i~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v~ 128 (430)
..|+|+|++|+||+..+ ..+..||||++++.+.+ ..++||+++.+++.||+|||+|.|.+...+. .|+++|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V--- 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVV--- 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEE---
Confidence 47999999999999888 67899999999997653 3679999998866699999999999886432 344444
Q ss_pred EeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 129 SRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 129 v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
+|++..+|++||.+.++|.++..+ .++++|..........|.|.+.+++
T Consensus 79 -~d~~~~~~~~iG~~~~~l~~l~~g----~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 -YDEDSGDDDFLGQACLPLDSLRQG----YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred -EeCCCCCCcEeEEEEEEhHHhcCc----eEEEEecCCCCCCCcceeEEEEEEE
Confidence 777766899999999999999652 3678886433222346888887765
No 60
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.70 E-value=3.1e-16 Score=140.13 Aligned_cols=118 Identities=19% Similarity=0.324 Sum_probs=93.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC----------CeEEeeeecCCCCCCee-cceEEEEeCcCCCceEEE
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE----------NTVSTNIINGGGRNPVF-NENLKLNVKTVESSLKCE 124 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~----------~k~KTkVikngG~NPvW-NEtF~F~V~~~d~~Lkle 124 (430)
...|++++|+||+ .+++|++||||++++.+... +++||+++++ +.||+| ||+|.|.+.. ...|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~-~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP-TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC-CCEEEEE
Confidence 4689999999998 78899999999999975442 3799999987 799999 9999999965 3456666
Q ss_pred EEEEEeecccc----cCceeEEEEEeCccccccC--ceeeEEEEccCCCCCCCCCcEEEEEE
Q 014112 125 IFMMSRVKNYL----EDQLLGFTLVPLSEVLVKN--GKLEKEFSLSSTDLFHSPAGFVQLSL 180 (430)
Q Consensus 125 V~v~v~Ded~v----~DdlIG~a~VPLsdLl~~~--~~l~~~f~Lss~dl~~~p~G~I~LsL 180 (430)
| +|++.. .|++||.+.|||.++..+. +....||+|..+..+..-+|.|.|.+
T Consensus 79 V----~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 V----KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred E----EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 6 565432 3799999999999998742 23557999986665556788888865
No 61
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=1e-16 Score=137.13 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=75.9
Q ss_pred eEEEEEEEeccCCCCCCCC----CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC--ceEEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIY----HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES--SLKCEIFMM 128 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~----gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~--~LkleV~v~ 128 (430)
|.|.|+|++|++|+..+.. +..||||+|++.. +++||+++++ +.||+|||+|.|.|...+. .|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~---~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~---- 72 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR---RVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFK---- 72 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC---EeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEE----
Confidence 6899999999999987653 3589999999954 6889999998 6999999999999876332 34444
Q ss_pred Eeecccc-cCceeEEEEEeCcccccc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~ 153 (430)
++|++.+ .|++||.+.++|.+|+.+
T Consensus 73 V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 73 VLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred EEECCCCCCCcceEEEEEEHHHHHhh
Confidence 4888876 799999999999999974
No 62
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=1.5e-16 Score=135.50 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=84.6
Q ss_pred CCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecccccCceeEEEEEeCc
Q 014112 70 ICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNYLEDQLLGFTLVPLS 148 (430)
Q Consensus 70 ~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~v~DdlIG~a~VPLs 148 (430)
..+.|++||||+|++.+. ...+|+++++ +.||+|||+|.|.|.+. ...|.++| +|++.++|++||.+.++|+
T Consensus 7 ~~~~G~~dPYv~v~v~~~--~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v----~d~~~~~d~~iG~~~v~L~ 79 (111)
T cd04052 7 ESKTGLLSPYAELYLNGK--LVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVV----KDDRDRHDPVLGSVSISLN 79 (111)
T ss_pred cccCCCCCceEEEEECCE--EEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEE----EECCCCCCCeEEEEEecHH
Confidence 456789999999999652 4679999887 79999999999999873 34455555 7777668999999999999
Q ss_pred cccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 149 EVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 149 dLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
++...++....||+|.. .++|+|+|++.|.|.
T Consensus 80 ~l~~~~~~~~~w~~L~~-----~~~G~i~~~~~~~p~ 111 (111)
T cd04052 80 DLIDATSVGQQWFPLSG-----NGQGRIRISALWKPV 111 (111)
T ss_pred HHHhhhhccceeEECCC-----CCCCEEEEEEEEecC
Confidence 99764455679999963 478999999999984
No 63
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.5e-16 Score=133.24 Aligned_cols=111 Identities=26% Similarity=0.333 Sum_probs=90.0
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeecccc
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNYL 135 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~v 135 (430)
|+|+|++|++|+..+..+.+||||+|.+.+. ..++|+++.+ +.||+|||+|.|.+.. ....+.++| +|.+..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~--~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v----~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE--KVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEV----YDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC--cceeeceecC-CCCCcccccEEEEeccCCCCEEEEEE----EeCCCC
Confidence 6899999999999998899999999999653 5689999887 7999999999999986 344555555 777766
Q ss_pred -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEE
Q 014112 136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQ 177 (430)
Q Consensus 136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~ 177 (430)
.|++||.+.++|.++.. +.....|++|.... +...|++-
T Consensus 74 ~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g--~~~~~~~~ 113 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG--GGKLGAVF 113 (115)
T ss_pred CCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC--CccCceEE
Confidence 69999999999999987 46677899996432 23456554
No 64
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3e-16 Score=136.09 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=86.8
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~ 134 (430)
|.|+|+|++|++|++.+.++.+||||+|++.+. .+.+|+++++ +.||+|||+|.|.+......|.++| +|++.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v----~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI--VKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEV----MDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCE--EeeceeEECC-CcCCccCceEEEEecCCCCEEEEEE----EECCC
Confidence 689999999999999999999999999999643 5789999876 7999999999999987655666665 77776
Q ss_pred c-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112 135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss 165 (430)
. .|++||.+.++|.++..+ ..+.||.|..
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~--~~~~~~~~~~ 103 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKK--NEDGKYVEYD 103 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCC--CCCceEEecC
Confidence 6 689999999999999963 5578888853
No 65
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=3e-16 Score=133.08 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=81.1
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-----CceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-----SSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-----~~LkleV~v~ 128 (430)
-+.|+|+|++|++|+ .+..||||++++.+ ++++|+++++ +.||+|||+|.|.+.... ..|.++|
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~---~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V--- 71 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG---QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISV--- 71 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC---EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEE---
Confidence 378999999999999 57899999999985 5789999886 699999999999986422 2344444
Q ss_pred Eeecccc-cCceeEEEEEeCccccccC--ceeeEEEEcc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKN--GKLEKEFSLS 164 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~--~~l~~~f~Ls 164 (430)
+|++.+ +|++||.+.++|+++..+. +...+||+|.
T Consensus 72 -~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 72 -YDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred -EcCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 888776 6999999999999998642 3467899985
No 66
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=1.9e-16 Score=143.82 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=81.8
Q ss_pred EEEEEEEeccCCCCCCCCC--------------CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc--CCC
Q 014112 56 VLEVYIHQARDIHNICIYH--------------KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT--VES 119 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~g--------------k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~--~d~ 119 (430)
.|.|+|++|++|+.++..+ .+||||+|.+.+ ++.||+++++ +.||+|||+|.|++.. ...
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g---~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG---QKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC---EeeecceEcC-CCCCCcceEEEEEeeCCCcCC
Confidence 4899999999999988554 689999999976 5789999997 6999999999999754 334
Q ss_pred ceEEEEEEEEeecccc-cCceeEEEEEeCccccccCce------eeEEEEcc
Q 014112 120 SLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGK------LEKEFSLS 164 (430)
Q Consensus 120 ~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~------l~~~f~Ls 164 (430)
.|.++| +|+|.. +|++||.+.++|.++...+.. ...|+.|.
T Consensus 77 ~l~~~v----~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 77 RIKIQI----RDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEE----EECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 555555 888877 899999999999999874321 24788874
No 67
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=2.5e-16 Score=143.88 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=89.0
Q ss_pred CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEE
Q 014112 51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCE 124 (430)
Q Consensus 51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~Lkle 124 (430)
....|.|+|+|++|+||+..+..+..||||+|++.... ..++||+++++ +.||+|||+|.|.+... +..|.++
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34679999999999999999999999999999996542 35889999998 69999999999985431 2245555
Q ss_pred EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112 125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165 (430)
Q Consensus 125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss 165 (430)
| +|.+.+ +|++||.+.++|.++.. .+....||.|..
T Consensus 102 V----~d~d~~~~d~~lG~v~i~l~~~~~-~~~~~~w~~~~~ 138 (162)
T cd04020 102 V----WDHDKLSSNDFLGGVRLGLGTGKS-YGQAVDWMDSTG 138 (162)
T ss_pred E----EeCCCCCCCceEEEEEEeCCcccc-CCCccccccCCh
Confidence 5 788877 59999999999999986 456678888853
No 68
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.66 E-value=1.7e-15 Score=137.31 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=94.6
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV 131 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D 131 (430)
.....|.|.|++|++|+..+ ||||.|+|.+. ...||+++.+ +.||.|||.|+|.+......+.+.| + .+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~--~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v--~-k~ 76 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKT--LYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNL--Y-RE 76 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCE--EEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEE--E-Ec
Confidence 34578999999999998754 89999999763 4579999987 6999999999998665333344433 1 22
Q ss_pred cccc----cCceeEEEEEeCccccccCceeeEEEEccCCCCCC--------CCCcEEEEEEEEEccC
Q 014112 132 KNYL----EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFH--------SPAGFVQLSLAYAGAS 186 (430)
Q Consensus 132 ed~v----~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~--------~p~G~I~LsLsf~p~~ 186 (430)
.+.. +|++||.+.||+.+|.. +...++||+|......+ ...+.|++++.|.+..
T Consensus 77 ~~~~~~~~~~~~IG~V~Ip~~~l~~-~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 77 SDKKKKKDKSQLIGTVNIPVTDVSS-RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cCccccccCCcEEEEEEEEHHHhcC-CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 2222 58999999999999996 57789999997554332 3458999999999864
No 69
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=2.7e-15 Score=137.11 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=92.6
Q ss_pred EEEEEEeccC--CCCCCCCCCCCcEEEEEEe--CCCCCeEEeeeecCCCCCCeecceEEEEeCcCC---------CceEE
Q 014112 57 LEVYIHQARD--IHNICIYHKQDVYAKLCLT--SDPENTVSTNIINGGGRNPVFNENLKLNVKTVE---------SSLKC 123 (430)
Q Consensus 57 L~VtVisArn--Lkn~di~gk~DPYVkVsL~--~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d---------~~Lkl 123 (430)
++++|+.|++ |+..+..+..||||++++. +...++.||+++++ +.||+|||+|.|.|.... ..|.+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 4566666666 6677767789999999983 33457999999997 899999999999997642 23555
Q ss_pred EEEEEEeecccc--cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 124 EIFMMSRVKNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 124 eV~v~v~Ded~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
+| +|++.+ .|++||.+.++|..+.. ......||+|.. ....-.|.|++.+......
T Consensus 83 ~V----~d~~~f~~~D~~iG~~~i~L~~l~~-~~~~~~~~~L~~--~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 83 EV----YHKGGFLRSDKLLGTAQVKLEPLET-KCEIHESVDLMD--GRKATGGKLEVKVRLREPL 140 (155)
T ss_pred EE----EeCCCcccCCCeeEEEEEEcccccc-cCcceEEEEhhh--CCCCcCCEEEEEEEecCCC
Confidence 55 888764 59999999999999987 345567999852 2223578999999877644
No 70
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.1e-15 Score=159.10 Aligned_cols=144 Identities=22% Similarity=0.214 Sum_probs=113.0
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK 132 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De 132 (430)
....|.|+|++|++|+..+.-|..||||+++|.++...+++|++.++ +.||+|||+|+|.|...+. ...+|++.++|.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l-~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEEL-SNRVLHLSVYDF 242 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHh-ccCEEEEEEEec
Confidence 45789999999999999995577999999999999888999999987 8999999999999876322 223355666998
Q ss_pred ccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCC-CCCCcEEEEEEEEEccCCCcccCCCCCCccccccccccccc
Q 014112 133 NYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-HSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQESEI 210 (430)
Q Consensus 133 d~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-~~p~G~I~LsLsf~p~~p~~~~~~~~p~~~~tn~vl~~~~~ 210 (430)
|.+ ++++||++.++|..+... .....|++|...... ....|+|.++|+|.|..+ .++..|+-++.+
T Consensus 243 drfsr~~~iGev~~~l~~~~~~-~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g-----------~ltv~v~kar~L 310 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDLL-STTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG-----------RLTVVVIKARNL 310 (421)
T ss_pred CCcccccEEEEEEecCcccccc-ccceeeeccccccCCcccccceEEEEEEeecCCC-----------eEEEEEEEecCC
Confidence 887 899999999999999874 445678888643111 122389999999999854 455556666654
No 71
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=8.4e-16 Score=138.51 Aligned_cols=91 Identities=27% Similarity=0.407 Sum_probs=80.4
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN 133 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded 133 (430)
.|.|+|+|++|+||+..+. +..||||++.+.+ +++||+++++ +.||+|||+|.|.+.+....+.++| ||++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~---~~~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V----~D~d 71 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN---QKVKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEV----FDKD 71 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC---EEEEeeeEcC-CCCCeecccEEEEecCCCCEEEEEE----EECC
Confidence 4899999999999998887 8999999999965 6899999987 7999999999999988655666666 8888
Q ss_pred cc-cCceeEEEEEeCcccccc
Q 014112 134 YL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 134 ~v-~DdlIG~a~VPLsdLl~~ 153 (430)
.+ .|++||.+.++|.++...
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhhh
Confidence 77 699999999999999863
No 72
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.65 E-value=1.2e-15 Score=134.83 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=77.1
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC--CCceEEEEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV--ESSLKCEIFMMS 129 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~--d~~LkleV~v~v 129 (430)
...+.|+|+|++|++|+. +.++..||||+|++.+ +++||+++++ +.||+|||+|.|.+... ...|+++|
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~---~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V---- 95 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG---QEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEV---- 95 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC---ccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEE----
Confidence 457999999999999984 7789999999999965 5899999987 69999999999975432 34566655
Q ss_pred eecccc-cCceeEEEEEeCccccc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~ 152 (430)
+|++.+ .|++||.+.++|.....
T Consensus 96 ~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 96 WDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred EeCCCCCCCCeeEEEEEEecCCce
Confidence 888877 79999999999996653
No 73
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=1e-15 Score=134.35 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=79.9
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCcC-----CCceEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKTV-----ESSLKC 123 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~~-----d~~Lkl 123 (430)
..+.|+|+|++|++|+..+..+..||||+|.+.+.. ..++||+++++ +.||+|||+|.|.+... ...|.+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 457899999999999999989999999999997542 35889999987 69999999999998762 223444
Q ss_pred EEEEEEeecccc-cCceeEEEEEeCccccc
Q 014112 124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~ 152 (430)
+ ++|++.+ +|++||.+.++|.++..
T Consensus 93 ~----V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 T----VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred E----EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 4 4888877 59999999999999985
No 74
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=1.7e-15 Score=134.54 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=85.0
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCC-CCCeEEeeeecCCCCCCeecceEEEEeCcC----------------CC
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSD-PENTVSTNIINGGGRNPVFNENLKLNVKTV----------------ES 119 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~-p~~k~KTkVikngG~NPvWNEtF~F~V~~~----------------d~ 119 (430)
|+|+|++|+||+.. ..+.+||||+|++.+. ...+++|+++++ +.||+|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 68999999999988 7899999999999842 136899999997 79999999999998764 12
Q ss_pred ceEEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112 120 SLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST 166 (430)
Q Consensus 120 ~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~ 166 (430)
.|+++ ++|.+.. ++++||.+.++|.++.. .+....||+|...
T Consensus 79 ~l~i~----V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 79 ELRVE----LWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred EEEEE----EEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 34444 4787776 79999999999999986 4667899999743
No 75
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=5e-15 Score=129.00 Aligned_cols=116 Identities=25% Similarity=0.371 Sum_probs=89.3
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL 135 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v 135 (430)
.|+|+|++|+ |...+.++++||||+|++.+. ...+|+++++ +.||+|||+|.|.+... ..|.++| +|++.+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~-t~~P~Wne~f~~~~~~~-~~l~~~V----~d~~~~ 73 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKK-TSNPKWNEHFTVLVTPQ-STLEFKV----WSHHTL 73 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCC-CCCCccccEEEEEeCCC-CEEEEEE----EeCCCC
Confidence 6999999999 555555899999999999753 4789999886 79999999999998753 4455555 888877
Q ss_pred -cCceeEEEEEeCcccccc-Cce---eeEEEEccCCCC-CCCCCcEEEEEE
Q 014112 136 -EDQLLGFTLVPLSEVLVK-NGK---LEKEFSLSSTDL-FHSPAGFVQLSL 180 (430)
Q Consensus 136 -~DdlIG~a~VPLsdLl~~-~~~---l~~~f~Lss~dl-~~~p~G~I~LsL 180 (430)
.|++||.+.++|.++... ++. ...|++|..... .....|.|.+++
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 799999999999999863 222 335888864331 123578888875
No 76
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.62 E-value=1.8e-15 Score=134.87 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=80.8
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCC--eEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPEN--TVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~--k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~ 128 (430)
.+.|+|+|++|+||+..+..+..||||+|+|.++..+ +.||+++++ +.||+|||+|.|.|... +..|+++|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V--- 89 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTV--- 89 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEE---
Confidence 4689999999999999998899999999999876433 678999887 79999999999999862 22344444
Q ss_pred Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.+ ++++||.+.|+... . +...++|+.+.
T Consensus 90 -~~~d~~~~~~~iG~v~lg~~~--~-g~~~~hW~~ml 122 (136)
T cd08406 90 -AESTEDGKTPNVGHVIIGPAA--S-GMGLSHWNQML 122 (136)
T ss_pred -EeCCCCCCCCeeEEEEECCCC--C-ChhHHHHHHHH
Confidence 777765 79999999998764 2 23345666553
No 77
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.62 E-value=9.8e-16 Score=133.43 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=84.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFM 127 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v 127 (430)
..+.|.|+|++|+||+..+..+..||||+|.+.++. ..+.||+++++ +.||+|||+|.|.+...+ ..|.++|
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V-- 87 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITV-- 87 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEE--
Confidence 358999999999999999999999999999997643 24789999987 799999999999987632 2455555
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.. .|++||.+.++|.. . +....+||.+.
T Consensus 88 --~d~d~~~~~~~lG~~~i~l~~--~-~~~~~~W~~~l 120 (133)
T cd08384 88 --WDKDIGKSNDYIGGLQLGINA--K-GERLRHWLDCL 120 (133)
T ss_pred --EeCCCCCCccEEEEEEEecCC--C-CchHHHHHHHH
Confidence 788766 69999999999985 2 34456788774
No 78
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=4.2e-15 Score=130.36 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=82.7
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIF 126 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~ 126 (430)
...+.|+|+|++|++|+..+..+..||||+|.+.+.. ..+++|+++++ +.||+|||+|.|.+...+ ..|.++|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v- 89 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTV- 89 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEE-
Confidence 3468999999999999999999999999999996533 24678998876 799999999999987522 1344444
Q ss_pred EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|++.+ .|++||.+.|++... +....+|+.+.
T Consensus 90 ---~d~~~~~~~~~iG~~~i~~~~~---~~~~~~W~~~~ 122 (136)
T cd08402 90 ---LDYDRIGKNDPIGKVVLGCNAT---GAELRHWSDML 122 (136)
T ss_pred ---EeCCCCCCCceeEEEEECCccC---ChHHHHHHHHH
Confidence 888876 689999999999753 23445677664
No 79
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.61 E-value=3.6e-15 Score=133.57 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=79.3
Q ss_pred ceEEEEEEEeccCCCCCC--CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112 54 IGVLEVYIHQARDIHNIC--IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF 126 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~d--i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~ 126 (430)
.+.|+|+|++|+||+..+ ..+..||||+|+|.++.. .++||++.++ +.||+|||+|.|.|... +..|.++|
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V- 91 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEV- 91 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEE-
Confidence 578999999999999887 335599999999987642 4779999887 79999999999999872 22344444
Q ss_pred EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ +|++||.+.+++.. . +...++|..+
T Consensus 92 ---~d~d~~~~~d~iG~v~lg~~~--~-g~~~~hW~~m 123 (138)
T cd08407 92 ---LNQDSPGQSLPLGRCSLGLHT--S-GTERQHWEEM 123 (138)
T ss_pred ---EeCCCCcCcceeceEEecCcC--C-CcHHHHHHHH
Confidence 788777 79999999999974 2 3334455554
No 80
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=5.2e-15 Score=127.25 Aligned_cols=94 Identities=23% Similarity=0.344 Sum_probs=77.6
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcC---CCceEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTV---ESSLKCEIFM 127 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~---d~~LkleV~v 127 (430)
.+.|+|+|++|++|++.+..+..||||++.+.+.. ..+.||+++++ +.||+|||+|.|. +... ...+.++|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v-- 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLV-- 90 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEE--
Confidence 47899999999999999999999999999996543 35789999987 6999999999996 3321 23455555
Q ss_pred EEeecccccCceeEEEEEeCccccc
Q 014112 128 MSRVKNYLEDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 128 ~v~Ded~v~DdlIG~a~VPLsdLl~ 152 (430)
+|++.+++++||.+.++|++|..
T Consensus 91 --~d~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 91 --LDEDRFGNDFLGETRIPLKKLKP 113 (123)
T ss_pred --EEcCCcCCeeEEEEEEEcccCCC
Confidence 77776689999999999999996
No 81
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=1.3e-15 Score=134.93 Aligned_cols=104 Identities=22% Similarity=0.332 Sum_probs=81.3
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC--C-CceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV--E-SSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~--d-~~LkleV~v~ 128 (430)
.+.|+|+|++|+||...+ .+.+||||+|+|.+... .++||+++++ +.||+|||+|.|.|... . ..|.++|
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V--- 88 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSV--- 88 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEE---
Confidence 478999999999999988 88899999999986532 4779999876 79999999999999752 2 2344444
Q ss_pred Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
++.+.+ ++++||.+.|+...... +...++|+.+.
T Consensus 89 -~~~~~~~~~~~lG~v~ig~~~~~~-~~~~~hW~~~~ 123 (137)
T cd08409 89 -MQSGGVRKSKLLGRVVLGPFMYAR-GKELEHWNDML 123 (137)
T ss_pred -EeCCCCCCcceEEEEEECCcccCC-ChHHHHHHHHH
Confidence 777755 79999999999765554 34455676664
No 82
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.60 E-value=1.1e-14 Score=127.92 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=73.1
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec--
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK-- 132 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De-- 132 (430)
|+|+|++|+||+ +..||||+|.+.+.. ..++|||++++ +.||+|||+|.|.|.. ...|++.| +|.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v----~d~~~ 69 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILC----YEKCY 69 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEE----EEccc
Confidence 789999999996 458999999997643 35799999987 7999999999999985 34566655 554
Q ss_pred -----ccc-cCceeEEEEEeCccccc-cCceeeEEEEcc
Q 014112 133 -----NYL-EDQLLGFTLVPLSEVLV-KNGKLEKEFSLS 164 (430)
Q Consensus 133 -----d~v-~DdlIG~a~VPLsdLl~-~~~~l~~~f~Ls 164 (430)
|.+ .|++||.+.+.|.-=.. ..+..+..+.|.
T Consensus 70 ~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 70 SKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 344 69999888887753222 245556667773
No 83
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.59 E-value=3.3e-15 Score=176.37 Aligned_cols=119 Identities=18% Similarity=0.360 Sum_probs=101.7
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC--CceEEEEEEEEe
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE--SSLKCEIFMMSR 130 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d--~~LkleV~v~v~ 130 (430)
..|.|.|+|++|+||. +.+|++||||+|.++.. .+.|||++++ ++||+|||.|+|.+..+. ..++++| |
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~--~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev----~ 2048 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG--PPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISC----K 2048 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCC--CcccccccCC-CCCCCcccceeeeecCCCCCCceEEEE----E
Confidence 4799999999999999 56899999999999854 4779999998 699999999998887743 4577776 8
Q ss_pred ecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcE---EEEEEEEEc
Q 014112 131 VKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGF---VQLSLAYAG 184 (430)
Q Consensus 131 Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~---I~LsLsf~p 184 (430)
|+|.++++.+|.+.|+|.++.. ++....||+|... +++.|. |++++.|.+
T Consensus 2049 d~d~f~kd~~G~~~i~l~~vv~-~~~~~~~~~L~~~---~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2049 SKNTFGKSSLGKVTIQIDRVVM-EGTYSGEYSLNPE---SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ecCccCCCCCceEEEEHHHHhc-CceeeeeeecCcc---cccCCCcceEEEEEEecC
Confidence 9998887899999999999997 6899999999732 235777 999999975
No 84
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=1.4e-15 Score=131.23 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=85.3
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v~ 128 (430)
.+.|+|+|++|+||+..+..+..||||++.+.+... .+++|+++++ +.||+|||+|.|.+...+ ..|.++|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v--- 88 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITV--- 88 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEE---
Confidence 478999999999999999899999999999976532 3679999987 699999999999998732 3455554
Q ss_pred Eeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss 165 (430)
+|.+.. ++++||.+.++|.+ . +...++||.|..
T Consensus 89 -~d~~~~~~~~~lG~~~i~l~~--~-~~~~~~W~~l~~ 122 (134)
T cd00276 89 -VDKDSVGRNEVIGQVVLGPDS--G-GEELEHWNEMLA 122 (134)
T ss_pred -EecCCCCCCceeEEEEECCCC--C-CcHHHHHHHHHh
Confidence 787765 79999999999999 3 345678998864
No 85
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.59 E-value=6.6e-15 Score=131.14 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=82.0
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEI 125 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV 125 (430)
...+.|.|+|++|+||+..+..+..||||+++|.+... .++||+++++ +.||+|||+|.|.|...+ ..|.+.
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~- 89 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFS- 89 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEE-
Confidence 34689999999999999999999999999999976432 3679999986 799999999999998622 234444
Q ss_pred EEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 126 FMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 126 ~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+++.+.+ ++++||.+.+++...-. ...++|+.+.
T Consensus 90 ---V~~~~~~~~~~~iG~v~l~~~~~~~--~~~~hW~~~l 124 (138)
T cd08408 90 ---VYNKRKMKRKEMIGWFSLGLNSSGE--EEEEHWNEMK 124 (138)
T ss_pred ---EEECCCCCCCcEEEEEEECCcCCCc--hHHHHHHHHH
Confidence 4777656 79999999999874432 2334666653
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.59 E-value=6.8e-15 Score=129.02 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=81.9
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC--CCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD--PENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM 127 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~--p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v 127 (430)
..+.|+|+|++|+||+..+..++.||||+|.+.+. ...+.||+++++ +.||+|||+|.|.+... +..|.++|
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v-- 89 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITV-- 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEE--
Confidence 35789999999999999999999999999999542 224679999987 79999999999998742 22445544
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.+ .|++||.+.|++.+. +...++|+.+.
T Consensus 90 --~d~~~~~~~~~lG~~~i~~~~~---~~~~~~w~~~~ 122 (136)
T cd08405 90 --MDKDRLSRNDLIGKIYLGWKSG---GLELKHWKDML 122 (136)
T ss_pred --EECCCCCCCcEeEEEEECCccC---CchHHHHHHHH
Confidence 888777 699999999999876 23345666664
No 87
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=9e-15 Score=127.08 Aligned_cols=104 Identities=24% Similarity=0.343 Sum_probs=86.7
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC--CCceEEEEEEEEe
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV--ESSLKCEIFMMSR 130 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~--d~~LkleV~v~v~ 130 (430)
+.|+|+|++|+||+..+..+..||||+|.+.+.+ ...+||+++++ +.||.|||+|.|.+... ...|.++| +
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v----~ 87 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEV----W 87 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEE----E
Confidence 8899999999999998888999999999997543 35889999987 69999999999998763 23455554 7
Q ss_pred ecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss 165 (430)
|++.+ .|++||.+.++|.++.. .....||.|..
T Consensus 88 d~~~~~~~~~iG~~~~~l~~l~~--~~~~~w~~L~~ 121 (131)
T cd04026 88 DWDRTTRNDFMGSLSFGVSELIK--MPVDGWYKLLN 121 (131)
T ss_pred ECCCCCCcceeEEEEEeHHHhCc--CccCceEECcC
Confidence 77766 79999999999999985 25678999964
No 88
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.59 E-value=8e-15 Score=128.26 Aligned_cols=105 Identities=22% Similarity=0.240 Sum_probs=81.7
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIF 126 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~ 126 (430)
...+.|+|+|++|++|+..+..+..||||+|.+.+.. ..+.+|+++++ +.||+|||+|.|.+.... ..|.++|
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v- 88 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAV- 88 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEE-
Confidence 3468999999999999999999999999999996532 24779998776 799999999999987521 1344444
Q ss_pred EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|++.+ .|++||.+.|++... +...+.|+.+.
T Consensus 89 ---~d~~~~~~~~~IG~~~l~~~~~---~~~~~~w~~~~ 121 (134)
T cd08403 89 ---VDYDRVGHNELIGVCRVGPNAD---GQGREHWNEML 121 (134)
T ss_pred ---EECCCCCCCceeEEEEECCCCC---CchHHHHHHHH
Confidence 888877 699999999998722 22235666664
No 89
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.58 E-value=9.1e-15 Score=128.40 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=83.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM 127 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v 127 (430)
..+.|.|+|++|+||+..+..+..||||+|.+.+... .+.||+++++ +.||+|||+|.|.+... ...|.++|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v-- 89 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLV-- 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEE--
Confidence 3578999999999999999999999999999976432 3678999887 79999999999999752 22344444
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|.+.+ ++++||.+.+++.. . +....+|+.|.
T Consensus 90 --~d~d~~~~~~~iG~~~~~~~~-~--~~~~~~w~~l~ 122 (136)
T cd08404 90 --LDSDRVTKNEVIGRLVLGPKA-S--GSGGHHWKEVC 122 (136)
T ss_pred --EECCCCCCCccEEEEEECCcC-C--CchHHHHHHHH
Confidence 888877 69999999999998 3 23356777774
No 90
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.58 E-value=9.2e-15 Score=125.61 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=79.5
Q ss_pred EEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeeccc
Q 014112 60 YIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 60 tVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~ 134 (430)
-.|+|++|++.+.++++||||+|++.+.. ...+||+++++ +.||+|||+|.|.+.. ....|+++| +|.+.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V----~d~d~ 79 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEV----YDVDS 79 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEE----EEecC
Confidence 45899999999999999999999998753 12589999998 7999999999998653 223455555 66664
Q ss_pred ----c-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 135 ----L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 135 ----v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+ +|++||.+.++|.+|.. +.....+|+|.
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~-~~~~~~~~~l~ 113 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVS-SPGQKLTLPLK 113 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhc-CCCcEEEEEcc
Confidence 4 79999999999999997 45556788883
No 91
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=1.3e-14 Score=127.92 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=79.9
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC--C-CceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV--E-SSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~--d-~~LkleV~v~ 128 (430)
.+.|+|+|++|+||+..+..+..||||+|++.+.. ..+++|+++++ +.||+|||+|.|.|... . ..|.++|
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V--- 88 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTV--- 88 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEE---
Confidence 47899999999999999999999999999985432 24689999887 79999999999999652 1 1344444
Q ss_pred Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
+|++.. +|++||.+.|....+- +...++|+.+.
T Consensus 89 -~d~d~~~~~~~iG~~~l~~~~~~--~~~~~~W~~l~ 122 (135)
T cd08410 89 -YGHNVKSSNDFIGRIVIGQYSSG--PSETNHWRRML 122 (135)
T ss_pred -EeCCCCCCCcEEEEEEEcCccCC--chHHHHHHHHH
Confidence 788766 7999999986653332 22346677664
No 92
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.57 E-value=1.9e-14 Score=128.98 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=83.2
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS 129 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v 129 (430)
...+.|+|+|++|+||+.....+..||||+|+|...+. .++||++.++...||+|||+|.|+|+..+ +.+.+.+.+
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~--~~v~l~v~v 88 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE--HGIQFLIKL 88 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh--heeEEEEEE
Confidence 34688999999999999876566779999999997654 48899998874357999999999999743 234455566
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
+|.+.+ ++++||.+.++..... +...++|...
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~--~~~~~hW~~m 121 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSS--SEAVEQWKDT 121 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCC--chhhhhHHHH
Confidence 888776 7999999999998643 2234556544
No 93
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.6e-14 Score=125.69 Aligned_cols=118 Identities=25% Similarity=0.289 Sum_probs=86.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|+|+|++|++|++.+..++.||||+|++.+.. ...||+++++ +.||+|||+|.|.+... ...|.++| +|++.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V----~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISV----MDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEE----EECCC
Confidence 489999999999999999999999999996532 3468888887 79999999999998653 33556655 78887
Q ss_pred c-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
+ .|++||.+.++|.+.... ....+.-+.. .....|.++.+.++.|
T Consensus 75 ~~~dd~iG~~~i~l~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 75 LGSDDLIGETVIDLEDRFFS--KHRATCGLPP---TYEESGPNQWRDSLKP 120 (124)
T ss_pred CCCCceeEEEEEeecccccc--hHHHhccCCC---cccccCceecCcccCc
Confidence 7 799999999999988752 1111222211 0124677776665544
No 94
>PLN02270 phospholipase D alpha
Probab=99.52 E-value=1e-13 Score=152.49 Aligned_cols=129 Identities=18% Similarity=0.271 Sum_probs=105.4
Q ss_pred cceEEEEEEEeccCCCCCCC------------------CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEe
Q 014112 53 FIGVLEVYIHQARDIHNICI------------------YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di------------------~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V 114 (430)
.+|+|+|+|++|++|++.+. .+..||||.|.|..+ +..||+++.|...||+|||+|++++
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a--~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA--RVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc--EEEEEeecCCCCCCCccccceEEee
Confidence 57999999999999997311 135699999999775 7889999998667999999999999
Q ss_pred CcCCCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCC-cEEEEEEEEEccCCC
Q 014112 115 KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPA-GFVQLSLAYAGASPD 188 (430)
Q Consensus 115 ~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~-G~I~LsLsf~p~~p~ 188 (430)
......+.| .++|.|.++.++||.+.||+.+|+. +..+++||++...+..+.+. -.|+++|+|.+...+
T Consensus 84 ah~~~~v~f----~vkd~~~~g~~~ig~~~~p~~~~~~-g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHMASNIIF----TVKDDNPIGATLIGRAYIPVEEILD-GEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccCcceEEE----EEecCCccCceEEEEEEEEHHHhcC-CCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 986544444 4599999999999999999999997 57789999997655443333 499999999996543
No 95
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.49 E-value=1.4e-13 Score=107.79 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=70.0
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEEEEeecccc
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFMMSRVKNYL 135 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v~v~Ded~v 135 (430)
|+|+|++|+||...+..+..||||++.+.+.....++|+++++ +.||.|||+|.|.+..... .|.++| +|.+..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V----~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEV----WDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEE----EEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEE----EECCCC
Confidence 8999999999999888899999999999986545699999987 5999999999999776322 345544 888877
Q ss_pred -cCceeEEEE
Q 014112 136 -EDQLLGFTL 144 (430)
Q Consensus 136 -~DdlIG~a~ 144 (430)
.|++||.+.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 499999874
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=2.2e-13 Score=114.81 Aligned_cols=88 Identities=17% Similarity=0.284 Sum_probs=72.1
Q ss_pred EEEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcC-----CCceEEEEEEEEe
Q 014112 59 VYIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTV-----ESSLKCEIFMMSR 130 (430)
Q Consensus 59 VtVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~-----d~~LkleV~v~v~ 130 (430)
+-.++|++|+..+.++++||||+|++.+.. ...+||+++++ +.||+|| +|.|.+... ...|+++| +
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V----~ 77 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEV----Y 77 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEE----E
Confidence 456799999999999999999999997642 23689999997 6999999 788886542 23455555 7
Q ss_pred ecccc-cCceeEEEEEeCccccc
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~ 152 (430)
|++.+ +|++||.+.++|.+|..
T Consensus 78 d~d~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 78 DYDSSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred EeCCCCCCcEEEEEEEEHHHHhc
Confidence 88877 69999999999999985
No 97
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.35 E-value=4.5e-12 Score=142.29 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=118.5
Q ss_pred ccCccccchhhhccCCCCccceEEEEEEEeccCCCCCC--CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEE
Q 014112 34 TKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNIC--IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLK 111 (430)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~g~L~VtVisArnLkn~d--i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~ 111 (430)
..++++|-..+++++. ..++|+|.|+|.+|++|+..+ +.+..|||+.+...+. ...|||+.++ ..||+|||+|+
T Consensus 416 Pnsl~idi~~~m~~~s-~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r--~~gkT~v~~n-t~nPvwNEt~Y 491 (1227)
T COG5038 416 PNSLTIDISQIMAGDS-GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR--VIGKTRVKKN-TLNPVWNETFY 491 (1227)
T ss_pred CceEEEcHHHhhcccc-CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccc--cCCccceeec-cCCccccceEE
Confidence 4678888877777775 889999999999999999988 6689999999996442 4569999998 89999999999
Q ss_pred EEeCcCCCceEEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCCC
Q 014112 112 LNVKTVESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPD 188 (430)
Q Consensus 112 F~V~~~d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p~ 188 (430)
+.|......|.++| ||.+.. .|+++|.+.++|..|.......++.+.+... ..+.|+|..++.|+|..++
T Consensus 492 i~lns~~d~L~Lsl----yD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~ 562 (1227)
T COG5038 492 ILLNSFTDPLNLSL----YDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIED 562 (1227)
T ss_pred EEecccCCceeEEE----EeccccCCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCC
Confidence 99999878888888 886655 7999999999999999743344456666422 2478999999999997653
No 98
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.35 E-value=8.2e-12 Score=97.81 Aligned_cols=100 Identities=29% Similarity=0.421 Sum_probs=80.5
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeecccc
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNYL 135 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~v 135 (430)
|.|+|++|++|.........+|||++.+.. ...++|+++.+ +.||.|||.|.|.+.. ....+.++| ++.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v----~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEV----WDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEE----EecCCC
Confidence 579999999999877788999999999976 36889999986 6999999999999987 344556655 666655
Q ss_pred -cCceeEEEEEeCccccccCceeeEEEEc
Q 014112 136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
.+.+||.+.+++.++....+....|++|
T Consensus 74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 5899999999999998223445566654
No 99
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.32 E-value=8.2e-13 Score=136.49 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=87.7
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC--CCceEEEEEEEEe
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV--ESSLKCEIFMMSR 130 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~--d~~LkleV~v~v~ 130 (430)
..|+|+|..|+||..+|..|-.||||++.|-+++. .++||||++. +.||+|||+|+|.+... +..|.+|||
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvW---- 254 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVW---- 254 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEe----
Confidence 47899999999999999999999999999988873 5899999997 79999999999999874 446777774
Q ss_pred ecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss 165 (430)
|-|.. ++|++|...+.+++|.. .....||.|.+
T Consensus 255 DWDrTsRNDFMGslSFgisEl~K--~p~~GWyKlLs 288 (683)
T KOG0696|consen 255 DWDRTSRNDFMGSLSFGISELQK--APVDGWYKLLS 288 (683)
T ss_pred cccccccccccceecccHHHHhh--cchhhHHHHhh
Confidence 44444 89999999999999985 44567887753
No 100
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.31 E-value=1.9e-11 Score=96.94 Aligned_cols=92 Identities=30% Similarity=0.495 Sum_probs=76.3
Q ss_pred EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112 56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~ 134 (430)
.|.|+|++|++|......+..+|||++.+.+.....++|+++.+ ..||.|||+|.|.+... ...|.++| ++++.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v----~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPELAELEIEV----YDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcccCEEEEEE----EecCC
Confidence 37899999999998887788999999999763224789999987 47999999999999885 45555555 77665
Q ss_pred c-cCceeEEEEEeCccccc
Q 014112 135 L-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 135 v-~DdlIG~a~VPLsdLl~ 152 (430)
. ++.+||.+.++|.++..
T Consensus 76 ~~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred ccCCceeEEEEEEHHHccc
Confidence 5 59999999999999986
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=99.30 E-value=2.7e-11 Score=128.98 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=81.5
Q ss_pred ceEEEEEEEeccCCC-----CCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEE
Q 014112 54 IGVLEVYIHQARDIH-----NICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEI 125 (430)
Q Consensus 54 ~g~L~VtVisArnLk-----n~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV 125 (430)
..+|.|+|++|+++. ..+.....||||+|.|.+.+. .+++|++. ++|.||+|||+|.|.|..++. .|+++|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccCceEEEEEE
Confidence 478999999999874 123456789999999998763 36678655 558999999999999987665 356655
Q ss_pred EEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112 126 FMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST 166 (430)
Q Consensus 126 ~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~ 166 (430)
+|+|.. .|++||.+.+||..|..| -+.++|..+
T Consensus 487 ----~D~D~~~~ddfiGQ~~LPv~~Lr~G----yR~VpL~~~ 520 (537)
T PLN02223 487 ----YDYEVSTADAFCGQTCLPVSELIEG----IRAVPLYDE 520 (537)
T ss_pred ----EecCCCCCCcEEEEEecchHHhcCC----ceeEeccCC
Confidence 888876 699999999999999974 245677544
No 102
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.27 E-value=2e-11 Score=109.23 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=78.5
Q ss_pred EEEEEEEeccCCC--CCCCCCC--CCcEEEEEEeCCCCCeEEeeeecCCCCC--CeecceEEEEeCcC------------
Q 014112 56 VLEVYIHQARDIH--NICIYHK--QDVYAKLCLTSDPENTVSTNIINGGGRN--PVFNENLKLNVKTV------------ 117 (430)
Q Consensus 56 ~L~VtVisArnLk--n~di~gk--~DPYVkVsL~~~p~~k~KTkVikngG~N--PvWNEtF~F~V~~~------------ 117 (430)
.|+|.|..|+|+. +..+.|+ .||||++||.+....+++|.|+++ ..| |+||++|.|.+...
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 3899999999955 4445675 999999999986567999999998 699 99999999987662
Q ss_pred --------CCceEEEEEEEEeecccc-cCceeEEEEEeCcccccc
Q 014112 118 --------ESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 118 --------d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~ 153 (430)
+......+.++++|.|.+ .|++||.+.++|..+..+
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 112334566677899988 699999999999988863
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=99.20 E-value=1.9e-10 Score=124.33 Aligned_cols=119 Identities=22% Similarity=0.293 Sum_probs=90.3
Q ss_pred ceEEEEEEEeccCCCC------CCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEE
Q 014112 54 IGVLEVYIHQARDIHN------ICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCE 124 (430)
Q Consensus 54 ~g~L~VtVisArnLkn------~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~Lkle 124 (430)
...|.|+|++|++|+- .+.+...||||+|.|.+.+. .+.+|+++.++ .||+|||+|.|.|...+. .++++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence 4689999999999742 24455679999999998653 47799999985 999999999999887554 34554
Q ss_pred EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112 125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
| +|+|.. .|++||.+.+||..|..| . ++++|.... +.+.+.+.|-+.|.
T Consensus 548 V----~D~D~~~~ddfiGq~~lPv~~Lr~G-y---R~VpL~~~~--G~~l~~a~Llv~f~ 597 (599)
T PLN02952 548 V----REYDMSEKDDFGGQTCLPVSELRPG-I---RSVPLHDKK--GEKLKNVRLLMRFI 597 (599)
T ss_pred E----EecCCCCCCCeEEEEEcchhHhcCC-c---eeEeCcCCC--CCCCCCEEEEEEEE
Confidence 4 777766 699999999999999974 3 588885433 34555566666653
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.17 E-value=5.7e-11 Score=133.63 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=97.9
Q ss_pred CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEE
Q 014112 51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMS 129 (430)
Q Consensus 51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v 129 (430)
-+..|.|+|.+++|.||+..+..|..||||++.|.+. ..++|+++++ +.||+|||.|.+.|.. ....+.+.|
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k--~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v---- 1108 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEK--SVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINV---- 1108 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecce--ecccccchhc-cCCCCccccceEeeeccccceEEEEE----
Confidence 3457999999999999999999999999999999763 4899999998 7999999999999986 444555444
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
+|.|.. ++++||.+.++|..+.. ++......+|.++. +....|.+++...|.+.+
T Consensus 1109 ~Dwd~~~knd~lg~~~idL~~l~~-~~~~n~~i~ldgk~-~~~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038 1109 NDWDSGEKNDLLGTAEIDLSKLEP-GGTTNSNIPLDGKT-FIVLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred eecccCCCccccccccccHhhcCc-CCccceeeeccCcc-eEecccEeecceecchhh
Confidence 777776 79999999999999998 45555666775432 222344444444444443
No 105
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4e-11 Score=128.19 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=95.3
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK 132 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De 132 (430)
-...++++|+.|++|...|.-|+.||||.+.++. .+.|||+|.. ..||+|||.|+|.+++....+++.||.. |.
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~k---tkrrtrti~~-~lnpvw~ekfhfechnstdrikvrvwde--d~ 366 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK---TKRRTRTIHQ-ELNPVWNEKFHFECHNSTDRIKVRVWDE--DN 366 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecc---cchhhHhhhh-ccchhhhhheeeeecCCCceeEEEEecC--cc
Confidence 3467899999999999999999999999999976 5889999986 7999999999999998666667666432 22
Q ss_pred c-------cc---cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 133 N-------YL---EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 133 d-------~v---~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
| .+ .||++|...|-+..+- |..+.||.|..+--.....|.|+|.|+..-
T Consensus 367 dlksklrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEEE
Confidence 2 12 3899999999888764 567899999643212235687777666544
No 106
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.14 E-value=3.7e-10 Score=122.10 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=81.1
Q ss_pred ceEEEEEEEeccCCC------CCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEE
Q 014112 54 IGVLEVYIHQARDIH------NICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCE 124 (430)
Q Consensus 54 ~g~L~VtVisArnLk------n~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~Lkle 124 (430)
..+|.|+|+.++++. ..+.++..||||+|.|.+.|. .+.+|++.+| |.||+|||+|.|.+.-.+. .|+++
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence 478999999999874 124456689999999998763 3679998776 7999999999999887554 45555
Q ss_pred EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112 125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST 166 (430)
Q Consensus 125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~ 166 (430)
| +|+|.. +|++||...+||..|..| - +.++|...
T Consensus 547 V----~d~d~~~~ddfiGQ~~lPv~~Lr~G-y---R~V~L~~~ 581 (598)
T PLN02230 547 V----HEHDINEKDDFGGQTCLPVSEIRQG-I---HAVPLFNR 581 (598)
T ss_pred E----EECCCCCCCCEEEEEEcchHHhhCc-c---ceEeccCC
Confidence 5 888875 799999999999999974 2 34566543
No 107
>PLN02228 Phosphoinositide phospholipase C
Probab=99.12 E-value=7.6e-10 Score=119.11 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=91.7
Q ss_pred ceEEEEEEEeccCCC------CCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCee-cceEEEEeCcCCC-ceEE
Q 014112 54 IGVLEVYIHQARDIH------NICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVF-NENLKLNVKTVES-SLKC 123 (430)
Q Consensus 54 ~g~L~VtVisArnLk------n~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvW-NEtF~F~V~~~d~-~Lkl 123 (430)
...|+|+|++|++|+ ..+.+...||||+|.|.+.+. .++||++++| |.||+| ||+|.|.+...+. .|++
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCceeEEEE
Confidence 358999999999872 112345689999999988763 4689999987 589999 9999999876554 3444
Q ss_pred EEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
.| +|+|.. .|++||.+.+||..|..| - +.++|.......-+...|.+.+.+.+..
T Consensus 509 ~V----~D~d~~~~d~figq~~lPv~~Lr~G-Y---R~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 509 KV----QDYDNDTQNDFAGQTCLPLPELKSG-V---RAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EE----EeCCCCCCCCEEEEEEcchhHhhCC-e---eEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 44 887755 799999999999999873 2 3557754433323456788888777654
No 108
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.08 E-value=1.3e-09 Score=117.63 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=79.8
Q ss_pred ceEEEEEEEeccCCC----C--CCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEE
Q 014112 54 IGVLEVYIHQARDIH----N--ICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCE 124 (430)
Q Consensus 54 ~g~L~VtVisArnLk----n--~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~Lkle 124 (430)
...|.|+|+.++++. . .+.+...||||+|.|.+.+. .+.||+++.++ .||+|||+|.|.|.-.+. .|++.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEE
Confidence 468999999999752 2 23345789999999987653 47899999985 799999999999876554 34554
Q ss_pred EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112 125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST 166 (430)
Q Consensus 125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~ 166 (430)
| +|+|.. .|++||.+.+||..|..| - +..+|...
T Consensus 530 V----~d~D~~~~ddfigq~~lPv~~Lr~G-y---R~V~L~~~ 564 (581)
T PLN02222 530 V----HEYDMSEKDDFGGQTCLPVWELSQG-I---RAFPLHSR 564 (581)
T ss_pred E----EECCCCCCCcEEEEEEcchhhhhCc-c---ceEEccCC
Confidence 4 887765 699999999999999974 2 34566543
No 109
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.08 E-value=2.3e-10 Score=99.08 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=68.9
Q ss_pred EEEEEEeccCCCCCC---CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112 57 LEVYIHQARDIHNIC---IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN 133 (430)
Q Consensus 57 L~VtVisArnLkn~d---i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded 133 (430)
|+|+|+.||||.... +.+++||||.|.+... .+.|||+ ++||+|||+|.|.|.. .+.+.+.| ||+.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~--~kaRTr~----srnd~WnE~F~i~Vdk-~nEiel~V----yDk~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDV--ERARTKP----SRNDRWNEDFEIPVEK-NNEEEVIV----YDKG 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCE--EEEeccC----CCCCcccceEEEEecC-CcEEEEEE----EeCC
Confidence 789999999999888 6788999999999764 5888887 4999999999999953 44444444 7764
Q ss_pred cccCceeEEEEEeCccccc
Q 014112 134 YLEDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 134 ~v~DdlIG~a~VPLsdLl~ 152 (430)
.-..-.||-.-+.|++|..
T Consensus 70 ~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCeecceeeehhhHHHHHH
Confidence 3356789999999999986
No 110
>PLN02352 phospholipase D epsilon
Probab=99.06 E-value=9.4e-10 Score=121.26 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=91.6
Q ss_pred cceEEEEEEEeccCCCCC----CCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNI----CIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIF 126 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~----di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~ 126 (430)
.+|+|+++|.+|+-+... +.. ...||||+|.|..+ +..|| .+ ..||+|||+|++.+.... ..+.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~--~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~v- 80 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNK--KVAKT---SH-EYDRVWNQTFQILCAHPLDSTITITL- 80 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCc--EEecC---CC-CCCCccccceeEEeeeecCCcEEEEE-
Confidence 589999999999854432 121 12299999999765 56778 44 469999999999999854 4444544
Q ss_pred EEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112 127 MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP 187 (430)
Q Consensus 127 v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p 187 (430)
+| +-++||.+.||+.+|+.++..++.||++...+..+.+...|+++|+|.|...
T Consensus 81 ---k~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 81 ---KT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred ---ec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 66 5789999999999999843448999999766544444469999999999653
No 111
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=9.8e-10 Score=114.82 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=77.9
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS 129 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v 129 (430)
...|.|+|.|++||+|+..+..+-.||||++++.... ..+.||.+.++ +.||+|||+|.|.|+.... -++.|++.+
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l-~~~~l~l~V 372 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQL-AEVSLELTV 372 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHh-heeEEEEEE
Confidence 3469999999999999999999999999999998765 34778888776 8999999999999986222 223345566
Q ss_pred eecccc-cCceeEEEEEeCcc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSE 149 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsd 149 (430)
+|++.+ .+++||.+.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 888888 57799988888765
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.99 E-value=2.7e-09 Score=116.53 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=88.8
Q ss_pred eEEEEEEEeccCCC-CCCC---CCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCc-eEEEEEE
Q 014112 55 GVLEVYIHQARDIH-NICI---YHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESS-LKCEIFM 127 (430)
Q Consensus 55 g~L~VtVisArnLk-n~di---~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~-LkleV~v 127 (430)
.+|.|+|++++++. ..+. ....||||.|.|-+-|. .+.+|++++++|-||.|+|+|.|.|..++.. ++++|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V-- 693 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEV-- 693 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEE--
Confidence 37999999999654 3222 24689999999988774 4889998888899999999999999987664 45554
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
.|+|.. .|+++|...+|+..|..| - +-++|.+.+......-.|-+.++|.
T Consensus 694 --~d~d~~~~ddF~GQ~tlP~~~L~~G-y---RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 694 --HDYDYIGKDDFIGQTTLPVSELRQG-Y---RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred --EecCCCCcccccceeeccHHHhhCc-e---eeeeecCCCCccccceeEEEEEEEe
Confidence 888887 599999999999999984 2 2346644332222344455555543
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.97 E-value=1.5e-09 Score=117.40 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=102.9
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY 134 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~ 134 (430)
..|.|+|.+|+||+..+.-|..||||.|.|... ..+||.|+.+ +..|-|.|.|+|.|+..-.. |-|+++|+|.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E--~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~----l~fYv~D~d~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE--EVCRTATVEK-SLCPFFGEEFYFEIPRTFRY----LSFYVWDRDL 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecch--hhhhhhhhhh-hcCCccccceEEecCcceee----EEEEEecccc
Confidence 468999999999999999999999999999643 6899999998 79999999999999973233 3455589994
Q ss_pred ccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 135 LEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 135 v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
-+|+.||.+-|-=.+|..- ...+.||.|..-|.-...+|+|+|+|.+.+..
T Consensus 78 ~~D~~IGKvai~re~l~~~-~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMY-PGKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ccccccceeeeeHHHHhhC-CCCccceeccccCCChhhceeEEEEEEecccc
Confidence 4899999999998888763 34568999976554445799999999999875
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.78 E-value=2.1e-08 Score=109.87 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=78.8
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeec-ceEEEEeCcCCC-ceEEEEEEEEe
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFN-ENLKLNVKTVES-SLKCEIFMMSR 130 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWN-EtF~F~V~~~d~-~LkleV~v~v~ 130 (430)
..|.|.||.||.|+... .|..-|||.|.|-+++ ..+++|+++..+|.||+|| |+|+|.|.+++- .|++.| +
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V----~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVV----Y 1139 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEE----e
Confidence 68899999999999543 3667899999998876 3577888888789999999 999999998644 466655 9
Q ss_pred ecccc-cCceeEEEEEeCcccccc
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~ 153 (430)
++|.+ ...+||.+.+|+..|..|
T Consensus 1140 eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cccccCCcceeeeeecchhhhhcc
Confidence 99988 457999999999999974
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.41 E-value=3.9e-08 Score=106.92 Aligned_cols=132 Identities=19% Similarity=0.293 Sum_probs=97.0
Q ss_pred ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---------------------------Ce-EEeeeecCCCCC
Q 014112 52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---------------------------NT-VSTNIINGGGRN 103 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---------------------------~k-~KTkVikngG~N 103 (430)
.|...|.|.+..|+||.+.+..|-.|||+.+.+.+... +- +-|.| +..+.|
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLn 189 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLN 189 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCC
Confidence 46677889999999999999999999999987764321 11 12344 445899
Q ss_pred CeecceEEEEeCcCC-CceEEEEEEEEeecc------------------------------cc---cCceeEEEEEeCcc
Q 014112 104 PVFNENLKLNVKTVE-SSLKCEIFMMSRVKN------------------------------YL---EDQLLGFTLVPLSE 149 (430)
Q Consensus 104 PvWNEtF~F~V~~~d-~~LkleV~v~v~Ded------------------------------~v---~DdlIG~a~VPLsd 149 (430)
|+|||+|.|.|.++. ..+++.||..-.+.. .. .||++|.+.|||++
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 999999999999953 357777764311000 00 28999999999999
Q ss_pred ccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 150 VLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 150 Ll~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
|-. .| +++||.|..+.-..+.+|.++|.|.+....
T Consensus 270 iP~-~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 270 IPP-DG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred CCc-ch-HHHHhccCcccccccccceEEEEEEEeeec
Confidence 986 23 579999975543445799999999887653
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.35 E-value=1.7e-06 Score=92.72 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=95.8
Q ss_pred eEEEEEEEeccCCCCCCCCC-CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeec-ceEEEEeCcC---CCceEEEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIYH-KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFN-ENLKLNVKTV---ESSLKCEIFMMS 129 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~g-k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWN-EtF~F~V~~~---d~~LkleV~v~v 129 (430)
|.|-|.|..||+|+-+|..+ -.|.||.+.+.. ..+||.|..+ ..||.|| +-|+|.|.+. +..|.+.|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n---~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~l---- 74 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN---TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRL---- 74 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc---cceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEE----
Confidence 67899999999999888764 579999999976 6999999998 6999999 5699999883 33455554
Q ss_pred eecccc-cCceeEEEEEeCcccccc---------CceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVK---------NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~---------~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
.|+|.. .+|.||.+.|+|..|+.. +..+..||++- |..|.-+|+|.+-+....
T Consensus 75 ld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif--dtihgirgeinvivkvdl 137 (1169)
T KOG1031|consen 75 LDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF--DTIHGIRGEINVIVKVDL 137 (1169)
T ss_pred ecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc--eecccccceeEEEEEEee
Confidence 788866 799999999999988753 12466899984 445777999998877544
No 117
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.32 E-value=4.2e-07 Score=102.90 Aligned_cols=105 Identities=25% Similarity=0.344 Sum_probs=83.1
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEE-eCc---CCCceEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLN-VKT---VESSLKCEIFM 127 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~-V~~---~d~~LkleV~v 127 (430)
.|+|.|-|+.|++|.-..-....||||+.+|.+++. .+.|||++++ ++||.|||.+.++ ++- ....|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sV-- 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSV-- 1599 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeee--
Confidence 589999999999997655566799999999999874 4889999997 7999999999887 222 112344444
Q ss_pred EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
...+.+ .+.++|.+.+||.++.. ..+...||.|.
T Consensus 1600 --ls~~~~~en~~lg~v~i~L~~~~l-~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1600 --LSNGGLLENVFLGGVNIPLLKVDL-LKESVGWYNLG 1634 (1639)
T ss_pred --ecccceeeeeeeeeeecchhhcch-hhhhcceeecc
Confidence 334444 79999999999999987 45566999995
No 118
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.3e-07 Score=95.61 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=95.1
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcCCCceEEEEEEEEe
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTVESSLKCEIFMMSR 130 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~d~~LkleV~v~v~ 130 (430)
..+|+.+|..|++|+.+++.+..|||+++.|.+.. ..+++|+|..| +.||.|||+.... |.+.+..++.+ .+.++
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~-Rk~vc 169 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVL-RKVVC 169 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhh-heeec
Confidence 46789999999999999999999999999998653 24788999876 7999999986664 33322322221 23348
Q ss_pred ecccc-cCceeEEEEEeCccccccCc-eeeEEE--Ecc--CCCCCC-CCCcEEEEEEEEEccC
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVKNG-KLEKEF--SLS--STDLFH-SPAGFVQLSLAYAGAS 186 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~~~-~l~~~f--~Ls--s~dl~~-~p~G~I~LsLsf~p~~ 186 (430)
|++.+ .++.+|...|+|..+..... ....|| .+. ..+.-+ .++|.|.++|.|....
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~ 232 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT 232 (362)
T ss_pred cCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCC
Confidence 88877 69999999999999997422 233443 222 222222 4789999999988765
No 119
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.27 E-value=3.3e-07 Score=99.91 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=79.9
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~ 128 (430)
..+|.|.|+.|++|-..|..|-.||||+|.|.+-- -..+||+|++. +.||+|+|+|.|.|+.. -..-...|.|.
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEE
Confidence 45788889999999999999999999999997532 13679999998 89999999999999872 11112225566
Q ss_pred Eeecccc-cCceeEEEEEeCccccc
Q 014112 129 SRVKNYL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 129 v~Ded~v-~DdlIG~a~VPLsdLl~ 152 (430)
++|+|++ .+|+-|++.+-|.++-.
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 6999999 69999999999998863
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.98 E-value=5.5e-06 Score=93.03 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=74.8
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEee
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRV 131 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~D 131 (430)
.-..++|+|++|-+|...|..|++|||++|.++.. ...-++..+.+ +.||+|++.|.+.+.- .+..|.++| ||
T Consensus 611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~-~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~v----yd 684 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK-RTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEV----YD 684 (1105)
T ss_pred ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccc-hhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEE----EE
Confidence 34677899999999999999999999999999753 22346677776 8999999998877654 234556655 88
Q ss_pred cccc-cCceeEEEEEeCccccc
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~ 152 (430)
.|.+ +|+.||+..++|..=..
T Consensus 685 ~D~~~~d~~iget~iDLEnR~~ 706 (1105)
T KOG1326|consen 685 HDLEAQDEKIGETTIDLENRWL 706 (1105)
T ss_pred eecccccchhhceehhhhhccc
Confidence 8887 69999999999975443
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.95 E-value=1.4e-05 Score=87.24 Aligned_cols=137 Identities=19% Similarity=0.235 Sum_probs=92.8
Q ss_pred EEEEeccCCCCCCCCCCCCcEEEEEEeCCC-CCeEEeeeecCCCCCCeecceEEEEeCcC----------------CCce
Q 014112 59 VYIHQARDIHNICIYHKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLNVKTV----------------ESSL 121 (430)
Q Consensus 59 VtVisArnLkn~di~gk~DPYVkVsL~~~p-~~k~KTkVikngG~NPvWNEtF~F~V~~~----------------d~~L 121 (430)
..++++|++-... .+.+||||++...+.. ....+|++.+. +.||.|||.|.|.+... ...|
T Consensus 135 c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 135 CHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 3445555554433 4669999999987643 23469999998 79999999999998864 1123
Q ss_pred EEEEEEEEee-cccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCC-----CCCCcEEEEEEEEEc----------
Q 014112 122 KCEIFMMSRV-KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-----HSPAGFVQLSLAYAG---------- 184 (430)
Q Consensus 122 kleV~v~v~D-ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-----~~p~G~I~LsLsf~p---------- 184 (430)
++++ ++ -+.+ .++++|++.+|+..+.. ......||-|..++-. +.--|.++|.+.|.-
T Consensus 213 rv~l----W~~~~~~~~~~FlGevrv~v~~~~~-~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps~~Y~ 287 (800)
T KOG2059|consen 213 RVDL----WNDLNLVINDVFLGEVRVPVDVLRQ-KSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPSQYYK 287 (800)
T ss_pred EEee----ccchhhhhhhhhceeEEeehhhhhh-ccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccHhhhh
Confidence 4444 44 3444 69999999999998885 3445689988644321 224688999999875
Q ss_pred -------cCCCcccCCCCCCccccc
Q 014112 185 -------ASPDVMAIPAVPKPLAAD 202 (430)
Q Consensus 185 -------~~p~~~~~~~~p~~~~tn 202 (430)
.+++++++++-+-.||..
T Consensus 288 pL~~LLl~s~d~~p~taS~v~ileE 312 (800)
T KOG2059|consen 288 PLMDLLLESVDVQPITASAVAILEE 312 (800)
T ss_pred hHHHHHHhcccccccchhHHHHHHH
Confidence 344566666655444443
No 122
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=6.1e-05 Score=81.93 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=86.7
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC----CCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD----PENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS 129 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~----p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v 129 (430)
-..++|.|+.|.||+..- .|--.|||.|.|-+- ..+++.|++-.| +--|.+||+|+|.+......-..|+.+.+
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEEEEee
Confidence 467899999999999743 466689999999753 246888998665 79999999999999874444455666666
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
.|+.+- .|+.+|-+.++|.++.. .|....|++|.
T Consensus 1202 KDYCFAReDRvvGl~VlqL~~va~-kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVAD-KGSCACWVPLG 1236 (1283)
T ss_pred hhheeecccceeeeeeeehhhHhh-cCceeEeeecc
Confidence 777666 59999999999999998 47778999995
No 123
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.60 E-value=0.00011 Score=66.34 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=72.4
Q ss_pred EEEEEEeccCCCCC---------CCC----CCCCcEEEEEEeCCC-CCeEEeeeecCCCCCCeecceEEEEeCc------
Q 014112 57 LEVYIHQARDIHNI---------CIY----HKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLNVKT------ 116 (430)
Q Consensus 57 L~VtVisArnLkn~---------di~----gk~DPYVkVsL~~~p-~~k~KTkVikngG~NPvWNEtF~F~V~~------ 116 (430)
|.|.|++|.+|+.. ++- -..++||++.+.--+ ....+||++.+ +.-|.||.+|.|.++=
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 57889999999732 111 125899999965433 36889999998 7999999999999871
Q ss_pred CCC-----ce-EEEEEEEEeecc-----------cccCceeEEEEEeCccccccCceeeEEEEc
Q 014112 117 VES-----SL-KCEIFMMSRVKN-----------YLEDQLLGFTLVPLSEVLVKNGKLEKEFSL 163 (430)
Q Consensus 117 ~d~-----~L-kleV~v~v~Ded-----------~v~DdlIG~a~VPLsdLl~~~~~l~~~f~L 163 (430)
.+. .| .-++.+.+++++ ..+|-+||.+.|||.+|+....-+..||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 010 11 112333334433 125789999999999999843346789875
No 124
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.47 E-value=0.00046 Score=77.39 Aligned_cols=90 Identities=18% Similarity=0.340 Sum_probs=72.2
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC----CeEEeeeecCCCCCCeecce-EEEE-eCcCC-CceEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE----NTVSTNIINGGGRNPVFNEN-LKLN-VKTVE-SSLKCEI 125 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~----~k~KTkVikngG~NPvWNEt-F~F~-V~~~d-~~LkleV 125 (430)
-.++|.|+||+++-|.+..+ ..||.|.+-+-|. +.+|||++.++|.||+|||. |.|+ |--++ ..|++.|
T Consensus 701 IA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 35789999999999998764 4899999988773 57899999999999999975 8886 32222 3567766
Q ss_pred EEEEeecccccCceeEEEEEeCcccccc
Q 014112 126 FMMSRVKNYLEDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 126 ~v~v~Ded~v~DdlIG~a~VPLsdLl~~ 153 (430)
|++ +..+||.-.+||..|..|
T Consensus 777 ----yeE---ggK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 777 ----YEE---GGKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ----ecc---CCceeeeeccchhcccCc
Confidence 776 478999999999999873
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00022 Score=72.58 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=71.7
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR 130 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~ 130 (430)
...-|.|+++....|-..|..+..||||..++..+- .-++||++.++ +.||+||+.|.|.|...+. ..+.|.+.+.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL-a~~kv~lsvg 308 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL-AYKKVALSVG 308 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch-hcceEEEeec
Confidence 346688999999999999999999999999998553 24789999887 8999999999999998655 4555656667
Q ss_pred ecccc-cCceeEEEE
Q 014112 131 VKNYL-EDQLLGFTL 144 (430)
Q Consensus 131 Ded~v-~DdlIG~a~ 144 (430)
|.+.. ..+.+|-..
T Consensus 309 d~~~G~s~d~~GG~~ 323 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSM 323 (362)
T ss_pred ccCCCcCccCCCccc
Confidence 77655 567777443
No 126
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.17 E-value=0.00043 Score=72.35 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=113.1
Q ss_pred ccccccccccCCCCcCcccccccCcc-----ccCccccchhhhccCCCCccceEEEEEEEeccCCCCCCCCCCCCcEEEE
Q 014112 8 VSPFKSSVAAEPEKHKSDFFARSGSL-----TKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKL 82 (430)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~L~VtVisArnLkn~di~gk~DPYVkV 82 (430)
+++|.. ++-.-|+-.+.+|+..-. ..|++.---+...... .-.-..|++.|++.+++.-..--...|-|+++
T Consensus 318 ~~rfe~--laq~~kkdl~lvq~~~a~gl~~Pkfhye~R~fq~v~~f~-dl~d~elel~ivrg~~~pvp~gp~hld~fvr~ 394 (523)
T KOG3837|consen 318 NSRFEP--LAQPKKKDLRLVQSGSAPGLKAPKFHYETRAFQQVAFFE-DLKDQELELAIVRGQKNPVPGGPMHLDQFVRL 394 (523)
T ss_pred cccccc--cccccccchhHhhhhhccCCCCCcchhhhhhcchhhhcc-ccchhHhHHHHhhcccCCCCCCchhHHhhhcc
Confidence 345542 455555555556654322 4455544344444554 34456788999999988765544567889988
Q ss_pred EEeC--CCCCeEEeeeecCCCCCCeecceEEEEeCcCCC------------ceEEEEEEEEeecccc--cCceeEEEEEe
Q 014112 83 CLTS--DPENTVSTNIINGGGRNPVFNENLKLNVKTVES------------SLKCEIFMMSRVKNYL--EDQLLGFTLVP 146 (430)
Q Consensus 83 sL~~--~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~------------~LkleV~v~v~Ded~v--~DdlIG~a~VP 146 (430)
...- +..++.+|.++++ +..|.|+|.|.+.|..... .++|+| +.+..+ .|+++|++.+-
T Consensus 395 efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfei----fhkggf~rSdkl~gt~nik 469 (523)
T KOG3837|consen 395 EFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEI----FHKGGFNRSDKLTGTGNIK 469 (523)
T ss_pred cccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEE----eeccccccccceeceeeee
Confidence 7653 3357889999997 8999999999999987211 245555 888766 59999999999
Q ss_pred CccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 147 LSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 147 LsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
|..|.. .-++...++|. |......|.|.+.+...-.
T Consensus 470 le~Len-~cei~e~~~l~--DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 470 LEILEN-MCEICEYLPLK--DGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred ehhhhc-ccchhhceecc--ccccccCCeeEEEEEEecc
Confidence 998875 34556677774 4434457888888876643
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=97.02 E-value=0.00094 Score=73.77 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=69.0
Q ss_pred CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112 51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR 130 (430)
Q Consensus 51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~ 130 (430)
+...|.+.|+|++|+ ++. .|+|..+---+. +.+||.+.++ +.||+||+...|.|..... ++ ..+.++
T Consensus 50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~--~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~--~~-~~~~~~ 116 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKF---KDKWLACVSFGE--QTFRTETSDS-TDKPVWNSEKKLLLEKNGP--HL-ARISVF 116 (644)
T ss_pred ccccCeEEEEeehhh----hcc---CCcEEEEEEecc--eeeeeccccc-cCCcccchhhceEeccCCc--ce-EEEEEE
Confidence 356899999999998 332 377765433332 7999999987 8999999999999887332 23 244558
Q ss_pred ecccc-cCceeEEEEEeCcccccc
Q 014112 131 VKNYL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 131 Ded~v-~DdlIG~a~VPLsdLl~~ 153 (430)
|.+.+ .++++|.+.++|.++...
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHH
Confidence 88887 699999999999999873
No 128
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.97 E-value=0.0013 Score=56.17 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=64.8
Q ss_pred EEEEEeccCCCCCCCCC-CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-
Q 014112 58 EVYIHQARDIHNICIYH-KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL- 135 (430)
Q Consensus 58 ~VtVisArnLkn~di~g-k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v- 135 (430)
=|+|++.+||....-.| .+..|++--|+-.+.-.+||.+- .|..||+|+|||.|.|.-... -.+.|.+.++. ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL-~~V~L~fsv~~--~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNL-QTVRLVFKIQT--QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhc-cceEEEEEeec--cCC
Confidence 37899999998665544 67889986665444457788764 568999999999999875222 12233344454 44
Q ss_pred cCceeEEEEEeCccccc
Q 014112 136 EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 136 ~DdlIG~a~VPLsdLl~ 152 (430)
+.+.||++.+.|+.+-.
T Consensus 78 RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 78 RKRTIGECSLSLRTLST 94 (103)
T ss_pred ccceeeEEEeecccCCH
Confidence 78999999999987754
No 129
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.84 E-value=0.015 Score=53.71 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=66.3
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCC----ceEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVES----SLKCEIFM 127 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~----~LkleV~v 127 (430)
..|+|+|+.|.++.-. ...|.||++.|-.+.. ....|+-+. ..++.|||-+.|+|.-.+. .|.+.|
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti-- 80 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSI-- 80 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEE--
Confidence 4688999999988743 3469999998876431 122454443 3789999999998764333 444444
Q ss_pred EEeeccc--c---cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 128 MSRVKNY--L---EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 128 ~v~Ded~--v---~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
++... . ....||.+.++|=+... .| .+|...|.|...+.
T Consensus 81 --~~~~~~~~~k~~~~~iG~~ni~LFd~~~---------~L--------r~G~~~L~lW~~~~ 124 (158)
T cd08398 81 --CSVKGRKGAKEEHCPLAWGNINLFDYTD---------TL--------VSGKMALNLWPVPH 124 (158)
T ss_pred --EEEecccCCCCceEEEEEEEEEEECCCC---------hh--------hCCCEEEEEEcCCc
Confidence 43221 1 23569999988766331 22 36777777775443
No 130
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.75 E-value=0.016 Score=54.08 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=59.0
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM 127 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v 127 (430)
..++|+|+.+.+|.- -....+.||++.|-.... ....|+...- ...+.|||.+.|+|.-. +..|.+.||.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 468999999999884 124578899987765431 2345655442 47899999999986643 2345555543
Q ss_pred EEeecc-------------cccCceeEEEEEeCcccc
Q 014112 128 MSRVKN-------------YLEDQLLGFTLVPLSEVL 151 (430)
Q Consensus 128 ~v~Ded-------------~v~DdlIG~a~VPLsdLl 151 (430)
...... ...+..||.+.++|=+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 211110 012568888888876643
No 131
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.68 E-value=0.086 Score=46.37 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=80.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc---CC-C-ceEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT---VE-S-SLKCEIFM 127 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~---~d-~-~LkleV~v 127 (430)
.-..+.|+|++..+++. ....+||+...+........|.........-.|||+|.+.+.= .+ . .....+.+
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 44678999999999987 3345555554432211145666666556788999999987653 11 1 22223444
Q ss_pred EEeecccc-cCceeEEEEEeCccccccC-ceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 128 MSRVKNYL-EDQLLGFTLVPLSEVLVKN-GKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~-~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
.++....- ....||.+.|+|+++.... ......|+|... ......++|+|.+.+-.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSELR 138 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEECc
Confidence 44544222 2369999999999999742 455677888643 23466788888776543
No 132
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.39 E-value=0.031 Score=51.77 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=68.9
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeec---CCCCCCeecceEEEEeCcCCC----ceEEE
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIIN---GGGRNPVFNENLKLNVKTVES----SLKCE 124 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVik---ngG~NPvWNEtF~F~V~~~d~----~Lkle 124 (430)
..|.|+|.++.++.....-...|-||.++|..... ....|+... .-...+.|||.+.|+|.-.+. .|.+.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 56889999999998655334578999998876531 123444321 112367799999998764333 44554
Q ss_pred EEEEEeecc------cccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 125 IFMMSRVKN------YLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 125 V~v~v~Ded------~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
||-.....+ ...+..||.+.++|=+... .| .+|...|.|....
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~---------~L--------~~G~~~L~lW~~~ 136 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG---------VL--------RQGSLLLGLWPPS 136 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchh---------hh--------ccCCEEEEeccCC
Confidence 433211110 0135789999998766432 22 3788888887543
No 133
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.0054 Score=63.61 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=79.1
Q ss_pred cceEEEEEEEeccCCCCC-CCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112 53 FIGVLEVYIHQARDIHNI-CIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS 129 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~-di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v 129 (430)
..|.|+|-||.|++|... ....-.+|||+|++..... .+.+||...+ +..|.+-+.+.|.=......|...+|
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~~k~Lq~tv~--- 342 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPPGKYLQGTVW--- 342 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCCccEEEEEEe---
Confidence 468999999999999643 2234789999999997753 4778998887 45555545677765555556666664
Q ss_pred eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112 130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164 (430)
Q Consensus 130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls 164 (430)
-|...+ .+.++|.+.+-|.+|.........||.|-
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 455555 58899999999999887543566899884
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.88 E-value=0.044 Score=49.58 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=58.9
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCC----ceEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVES----SLKCEIFM 127 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~----~LkleV~v 127 (430)
..|+|+|+...++.. ......+.||++.|..... ....|+.... +.++.|||.+.|+|.-.+. .|.+.|
T Consensus 8 ~~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl-- 83 (156)
T cd08380 8 FNLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSI-- 83 (156)
T ss_pred CCeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEE--
Confidence 467888888888764 1124578999988876431 2335544432 4789999999998654323 444444
Q ss_pred EEeecccc---cCceeEEEEEeCcccc
Q 014112 128 MSRVKNYL---EDQLLGFTLVPLSEVL 151 (430)
Q Consensus 128 ~v~Ded~v---~DdlIG~a~VPLsdLl 151 (430)
++.... .+..||.+.++|=+..
T Consensus 84 --~~~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 84 --YAVSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred --EEEecCCCCcceEEEEEeEEeEccc
Confidence 443322 3689999999987643
No 135
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.72 E-value=0.11 Score=48.99 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=65.0
Q ss_pred eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCC----ceEEEEEEE
Q 014112 55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVES----SLKCEIFMM 128 (430)
Q Consensus 55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~----~LkleV~v~ 128 (430)
..++|+|+.+. +.+.+.......||++.|-... ....+|....- +.+|.|||-+.|+|.-.+. .|.+.||-.
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEE
Confidence 46788999997 4545444456788888766532 12335555554 5789999999988765333 455555322
Q ss_pred Eeecc---cc----------cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 129 SRVKN---YL----------EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 129 v~Ded---~v----------~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
..... .+ .+..||.+.+.|=+... .| .+|...|.+.-.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~---------~L--------r~G~~~L~~W~~~ 139 (178)
T cd08399 88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF---------LL--------RTGEYVLHMWQIS 139 (178)
T ss_pred ecCcccccccccccccccccccceEEEEEEEEEcCCC---------ce--------ecCCEEEEEecCC
Confidence 10000 00 25677777777655331 12 3677777776554
No 136
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=94.48 E-value=0.0091 Score=68.07 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=82.1
Q ss_pred CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEE---eCc-CCC---ceEE
Q 014112 51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN---VKT-VES---SLKC 123 (430)
Q Consensus 51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~---V~~-~d~---~Lkl 123 (430)
+..+..|+++|.+|+.|...+.-+-.|||+.+..-+ +.+.|-++.+ +.||.||++..|. |.. ... ...+
T Consensus 202 e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~---qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi 277 (1105)
T KOG1326|consen 202 EVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG---QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPI 277 (1105)
T ss_pred hhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc---ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCe
Confidence 445667889999999999999889999999999876 6788999886 8999999998886 222 111 1122
Q ss_pred EEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEE
Q 014112 124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSL 180 (430)
Q Consensus 124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsL 180 (430)
+.|.+||.+.. .++++|+...-..=... .+ --+|+++.... ...|.+.++.
T Consensus 278 -~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p-~lkw~p~~rg~---~l~gd~l~a~ 329 (1105)
T KOG1326|consen 278 -RVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CP-ALKWVPTMRGA---FLDGDVLIAA 329 (1105)
T ss_pred -EEEEeehhhhhchHHhhcccccceEEEec-CC-ccceEEeeccc---ccccchhHHH
Confidence 23455887766 69999987654432222 11 23688876432 2455555443
No 137
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.41 E-value=0.5 Score=43.99 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=85.3
Q ss_pred ccceEEEEEEEeccCCCCC-CCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC------C--ce
Q 014112 52 NFIGVLEVYIHQARDIHNI-CIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE------S--SL 121 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~-di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d------~--~L 121 (430)
.....|+|+|+.+|-.-+. +.. +..+.-.+|+|.= ..++++|+.+. +..+|-|+|.|.|.+.... . .+
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f-~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF-RGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe-cCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhh
Confidence 4567899999998855321 111 5566666666653 23899999998 5799999999999998732 1 11
Q ss_pred EE--EEEEEEeecccc-cCceeEEEEEeCccccccCcee--eEEEEccCCCCC-CCCCcEEEEEEEEEccCC
Q 014112 122 KC--EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKL--EKEFSLSSTDLF-HSPAGFVQLSLAYAGASP 187 (430)
Q Consensus 122 kl--eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l--~~~f~Lss~dl~-~~p~G~I~LsLsf~p~~p 187 (430)
.+ -|++.+--.|.. ...++|.-.+.=..++.. +.. .-..+|.....- +-+.|.|.|+|+..|..+
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s-~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS-GNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhcc-CCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 11 122222222322 448888888888888863 332 344555432211 237999999999999763
No 138
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.13 E-value=1.1 Score=41.60 Aligned_cols=108 Identities=25% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEEeCCCCCeEEeeeecC-CCCCCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCcccc
Q 014112 73 YHKQDVYAKLCLTSDPENTVSTNIING-GGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVL 151 (430)
Q Consensus 73 ~gk~DPYVkVsL~~~p~~k~KTkVikn-gG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl 151 (430)
..+..-|++|.+++. ...+|+...- ....=.|||.|.++|......|.++| |......+.+|+.+.+||....
T Consensus 34 ~~~~~~~ikl~~N~k--~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i----~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 34 VQKTRYYIKLFFNDK--EVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEI----YEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred hhheeEEEEEEECCE--EEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEE----EEccCccceEEEEEEeeCCCCc
Confidence 345678999999753 5666665543 34556688999999988666677776 6555578999999999998776
Q ss_pred ccCce---eeEEEEccCCCCCC-------------------CCCcEEEEEEEEEccC
Q 014112 152 VKNGK---LEKEFSLSSTDLFH-------------------SPAGFVQLSLAYAGAS 186 (430)
Q Consensus 152 ~~~~~---l~~~f~Lss~dl~~-------------------~p~G~I~LsLsf~p~~ 186 (430)
..... ...+|.+++....+ .-.|.|.++++|....
T Consensus 108 ~~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~~ 164 (168)
T PF15625_consen 108 VHTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVGE 164 (168)
T ss_pred ccccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCCC
Confidence 53111 33566665332111 1257777777776654
No 139
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=93.08 E-value=0.14 Score=55.52 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=63.9
Q ss_pred EEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCc-----CCCceEEEEEEEEee
Q 014112 60 YIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKT-----VESSLKCEIFMMSRV 131 (430)
Q Consensus 60 tVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~-----~d~~LkleV~v~v~D 131 (430)
-.++|++|.+.+++++.|||-.+.=..+. ...++|.++++ ++||.|-. |.+.... .+..+.+++ ||
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~----~d 214 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIEC----YD 214 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEE----ec
Confidence 34568999999999999999987654221 34789999998 79999986 4544443 123444444 66
Q ss_pred cccc-cCceeEEEEEeCccccc
Q 014112 132 KNYL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 132 ed~v-~DdlIG~a~VPLsdLl~ 152 (430)
.+.- .+++||.+..++.++..
T Consensus 215 ~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 215 YDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCCcCceeEecccHHHhcc
Confidence 6655 47999999999998863
No 140
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.78 E-value=0.37 Score=44.50 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=59.2
Q ss_pred CCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-cCceeEEEEEeCcc
Q 014112 74 HKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSE 149 (430)
Q Consensus 74 gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsd 149 (430)
...|.||++.|-.+.. ....|+... .+..+.|||-+.|+|.-.+..+...|.+.+++.... ....||.+.++|=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4578999988876431 133555444 357789999999987754333222233333554322 46799999999765
Q ss_pred ccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112 150 VLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP 187 (430)
Q Consensus 150 Ll~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p 187 (430)
.. + .| .+|...|.|.......
T Consensus 107 ~~---g------~L--------r~G~~~l~lw~~~~~d 127 (159)
T cd08397 107 KD---G------TL--------RRGRQKLRVWPDVEAD 127 (159)
T ss_pred CC---C------cE--------ecCCEEEEEEeCCCCC
Confidence 42 1 22 3788888887555543
No 141
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.52 E-value=0.32 Score=45.27 Aligned_cols=57 Identities=14% Similarity=0.329 Sum_probs=29.9
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEEeeccc--cc--CceeEEEEEeCcc
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMSRVKNY--LE--DQLLGFTLVPLSE 149 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v~Ded~--v~--DdlIG~a~VPLsd 149 (430)
..+.|.+..+ .++|.|||+|.+.++... ...++ .|.+++-.. .. +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HL--lFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHL--LFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT--SS-EEEEEEEEEE-CCCCTTEEE--EEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEec-CCCCCccEEEEEEcCchhcccEEE--EEEEEeeccccccCccceeEEEEEEeee
Confidence 4667778776 599999999999998721 12222 233343221 11 3799999999988
No 142
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.12 E-value=0.85 Score=40.70 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=50.5
Q ss_pred CcEEEEEEeCCCC--C--eEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEEEEeecccc-cC----ceeEEE
Q 014112 77 DVYAKLCLTSDPE--N--TVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFMMSRVKNYL-ED----QLLGFT 143 (430)
Q Consensus 77 DPYVkVsL~~~p~--~--k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v~v~Ded~v-~D----dlIG~a 143 (430)
+.||.+.|..... . ...|+...-...++.|||.+.|.|.-. +..|.+.| +..+.. .+ ..||.+
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l----~~~~~~~~~~~~~~~lgw~ 78 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTL----YGVDSKKKSKKKKVPLGWV 78 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEE----EEEECSTTT--EEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEE----EEecCCCccccceeEEEEE
Confidence 4677777765431 1 336766654126999999988886542 33455544 443322 23 699999
Q ss_pred EEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 144 LVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 144 ~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
.++|=+... .| .+|...|.| |....
T Consensus 79 n~~lFd~~~---------~L--------~~G~~~L~l-W~~~~ 103 (142)
T PF00792_consen 79 NLPLFDYRG---------QL--------RQGPQKLSL-WPDEE 103 (142)
T ss_dssp EEESB-TTS---------BB--------EEEEEEEE--EET-T
T ss_pred EEEeECCCC---------cc--------cCCCEEEEE-EcCCC
Confidence 999877642 22 267777777 44443
No 143
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.63 E-value=0.4 Score=54.80 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=75.3
Q ss_pred CCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccccc-CceeEEEEEeCccccccC
Q 014112 76 QDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLE-DQLLGFTLVPLSEVLVKN 154 (430)
Q Consensus 76 ~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~-DdlIG~a~VPLsdLl~~~ 154 (430)
.++|+++.|... .-.+|....+-=.+|.|.+.|.+.+......+.+.+ .+.+..+ ..++|.+.+|.-.++. +
T Consensus 138 ~e~Ylt~~l~~~--~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~----~~~~~~G~s~~w~~v~~s~~~~~~-~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKA--RYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRV----KGARVPGWSKRWGRVKISFLQYCS-G 210 (887)
T ss_pred ccchheeeechh--hhhchhhhhcccccchhhhhccccccccccEEEEee----cCCccccceeEEEEeccchhhhhc-c
Confidence 489999999654 566888887755999999999988887655544444 7777667 8999999999999997 4
Q ss_pred ceeeEEEEccCCCCCC-CCCcEEEEEEEEEccC
Q 014112 155 GKLEKEFSLSSTDLFH-SPAGFVQLSLAYAGAS 186 (430)
Q Consensus 155 ~~l~~~f~Lss~dl~~-~p~G~I~LsLsf~p~~ 186 (430)
.....||++...+... ...-.+.+.+.|.+..
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEeec
Confidence 6667888775444322 2233566667777643
No 144
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=91.43 E-value=1.8 Score=40.24 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=35.1
Q ss_pred eEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc------ccCceeEEEEEeCcc
Q 014112 91 TVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY------LEDQLLGFTLVPLSE 149 (430)
Q Consensus 91 k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~------v~DdlIG~a~VPLsd 149 (430)
.++|-+ ... ++|.|||+|++.++.... -..-|+|.+++-.. -....+|.+.+||-+
T Consensus 54 ~~~sv~-~~~-k~p~f~deiKi~LP~~l~-~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVV-YYH-KNPVFNDEIKIQLPADLT-PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEE-EcC-CCCCCceeEEEecCCccC-CCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 444444 443 999999999999975211 11223344454321 136799999999986
No 145
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.31 E-value=0.7 Score=44.49 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=37.1
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc--c---CceeEEEEEeCc
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL--E---DQLLGFTLVPLS 148 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v--~---DdlIG~a~VPLs 148 (430)
..++|-|... ..+|.|||++++.|+.. ..-..-|.|.++..-.- + ...+|.+.+||=
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~-~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIE-DFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChh-hCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4778888776 59999999999999862 11112223333432111 2 368999999985
No 146
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.94 E-value=0.61 Score=44.62 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.0
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc--cc-CceeEEEEEeCc
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY--LE-DQLLGFTLVPLS 148 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~--v~-DdlIG~a~VPLs 148 (430)
..++|-|... ..+|.|||++++.|+.. ..-..-|.|.++..-. -+ ...+|.+.+||-
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~-~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPID-KFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChh-hCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4678888886 59999999999999862 2112222232243211 11 278999999984
No 147
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=90.61 E-value=3.4 Score=42.89 Aligned_cols=121 Identities=16% Similarity=0.233 Sum_probs=82.9
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC--------CCceEEEEEEE
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV--------ESSLKCEIFMM 128 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~--------d~~LkleV~v~ 128 (430)
+-|.|+++|+.+.. -+....+...+.+ ....|-.+.. .-.|.||-.+.+.+... ...+++++ +
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng---~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c--~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNG---ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQC--F 72 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCC---ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEE--E
Confidence 56899999999876 3578888889977 6888887765 79999999988877651 11355554 2
Q ss_pred EeecccccCceeEEEEEeCccc---cccCc-eeeEEEEccCC-CCCCCCCcEEEEEEEEEccC
Q 014112 129 SRVKNYLEDQLLGFTLVPLSEV---LVKNG-KLEKEFSLSST-DLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 129 v~Ded~v~DdlIG~a~VPLsdL---l~~~~-~l~~~f~Lss~-dl~~~p~G~I~LsLsf~p~~ 186 (430)
-.|......+.||.+.+||..+ ..++. .-.+||+|.+. ..+.+.+=+|.|.|......
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 2232233678999999999999 44222 33489999754 11233345677777776654
No 148
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.81 E-value=3.1 Score=35.91 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=57.6
Q ss_pred CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCcccccc
Q 014112 74 HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 74 gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~ 153 (430)
|-.+..|.+.|... ...+|.--. -.+..|+++|.|.+... ..|++.| +.+|. -.+.|...+-|.+...
T Consensus 7 ~~~eV~avLklDn~--~VgqT~Wk~--~s~q~WDQ~Fti~LdRs-RELEI~V--ywrD~----RslCav~~lrLEd~~~- 74 (98)
T cd08687 7 GCSEVSAVLKLDNT--VVGQTQWKP--KSNQAWDQSFTLELERS-RELEIAV--YWRDW----RSLCAVKFLKLEDERH- 74 (98)
T ss_pred cccceEEEEEEcCe--EEeeccccc--cccccccceeEEEeecc-cEEEEEE--EEecc----hhhhhheeeEhhhhcc-
Confidence 33788999999642 456666543 36889999999999873 2344444 33443 3578888888888443
Q ss_pred CceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112 154 NGKLEKEFSLSSTDLFHSPAGFVQLSLAY 182 (430)
Q Consensus 154 ~~~l~~~f~Lss~dl~~~p~G~I~LsLsf 182 (430)
+ ...+| .|+|.+..++.|
T Consensus 75 ~----~~~~l-------epqg~l~~ev~f 92 (98)
T cd08687 75 E----VQLDM-------EPQLCLVAELTF 92 (98)
T ss_pred c----ceecc-------ccccEEEEEEEe
Confidence 1 12233 389999999998
No 149
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.96 E-value=3.1 Score=35.20 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=36.9
Q ss_pred EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCc
Q 014112 57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKT 116 (430)
Q Consensus 57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~ 116 (430)
+.+++..++++.-.......|.||++.|-.... ....|+.. .....+.|||-+.|+|.-
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i 74 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQI 74 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCch
Confidence 556677766665332222248999998876431 13355543 335669999999998665
No 150
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=85.78 E-value=5.6 Score=34.68 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=44.6
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcCCC--------ceEEEEEEEEeecccccCceeEEEEEeCccccccCc-eeeEE
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTVES--------SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNG-KLEKE 160 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~--------~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~-~l~~~ 160 (430)
+.+.|.++. |.||.+|-+-+|.|.-.+. .+.+|||- .-..+-..||.+.++|.+++...+ ++...
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhq----a~g~d~~tla~~~i~l~~ll~~~~~~i~~~ 84 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQ----ALGSDFETLAAGQISLRPLLESNGERIHGS 84 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEE----E-SS-EEEEEEEEE--SHHHH--S--EEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEe----eccCCeEEEEEEEeechhhhcCCCceEEEE
Confidence 577888887 6999999998888775322 35666632 222247899999999999997533 45555
Q ss_pred EEccCCCCCCCCCcEEEEEEEEE
Q 014112 161 FSLSSTDLFHSPAGFVQLSLAYA 183 (430)
Q Consensus 161 f~Lss~dl~~~p~G~I~LsLsf~ 183 (430)
-.|.+.. +..-|.|.+.++..
T Consensus 85 ~~l~g~~--~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 85 ATLVGVS--GEDFGTLEYWIRLR 105 (107)
T ss_dssp EEE-BSS--S-TSEEEEEEEEEE
T ss_pred EEEeccC--CCeEEEEEEEEEec
Confidence 5554332 33678888877754
No 151
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=81.82 E-value=2.8 Score=43.49 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=72.3
Q ss_pred cceEEEEEEEeccCCCCCCC--CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112 53 FIGVLEVYIHQARDIHNICI--YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR 130 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di--~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~ 130 (430)
..|+|-|+++.+|+|+-..- .-.-+-||++... ..++.||++-. ++.-=.|.|+|+.++... .++.+ .++.+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~-~vl~~--lvySW 122 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRS-SGPGFAWAEDFKHDVVNI-EVLHY--LVYSW 122 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeec--ccCcccccccc-CCCCccchhhceeecccc-eeeeE--EEeec
Confidence 36899999999999985433 3356889998764 44677887755 367778999999998863 23333 23333
Q ss_pred ecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 131 VKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 131 Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
+. -.+.++.-...+.+.-+.. ..-.+.|.|.- .|+|.+-+.|.|.-
T Consensus 123 ~p-q~RHKLC~~g~l~~~~v~r--qspd~~~Al~l-----ePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PP-QRRHKLCHLGLLEAFVVDR--QSPDRVVALYL-----EPRGQPPLRLPLAD 168 (442)
T ss_pred Cc-hhhccccccchhhhhhhhh--cCCcceeeeec-----ccCCCCceecccCC
Confidence 32 1245554444454444443 22233444431 36787777776653
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=79.60 E-value=6 Score=37.58 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=38.2
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEEeeccc-c--cCceeEEEEEeCcc
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMSRVKNY-L--EDQLLGFTLVPLSE 149 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v~Ded~-v--~DdlIG~a~VPLsd 149 (430)
....|-|... .++|.|+|+|.+.++.. ..-|.|+++=..+.+.. - ....+|.+.+||-+
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4678888876 59999999999999872 12355544222222111 1 14679999999864
No 153
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=73.57 E-value=10 Score=36.18 Aligned_cols=59 Identities=19% Similarity=0.374 Sum_probs=38.0
Q ss_pred CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEEeeccc---c---cCceeEEEEEeCcc
Q 014112 90 NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMSRVKNY---L---EDQLLGFTLVPLSE 149 (430)
Q Consensus 90 ~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v~Ded~---v---~DdlIG~a~VPLsd 149 (430)
....|-|... .++|.|+|++.+.++-. ..-|.|+++=..++... . ....+|.+.+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4678888887 49999999999998862 11344443111111111 1 24679999999876
No 154
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=69.03 E-value=9.3 Score=41.97 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCcEEEEEEeCCC----------------CCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEE
Q 014112 67 IHNICIYHKQDVYAKLCLTSDP----------------ENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMS 129 (430)
Q Consensus 67 Lkn~di~gk~DPYVkVsL~~~p----------------~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v 129 (430)
+...+++++.||-|.+...... ....+|.++.+ -.||.|-++|.+.... ....++++++.
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~-- 78 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYD-- 78 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeec-cCCccceeeechhheeeeeeeEEEEEee--
Confidence 3455677788888876653211 13448899998 5999999998876554 23345665522
Q ss_pred eecc--cc-cCceeEEEEEeCccccc
Q 014112 130 RVKN--YL-EDQLLGFTLVPLSEVLV 152 (430)
Q Consensus 130 ~Ded--~v-~DdlIG~a~VPLsdLl~ 152 (430)
.+.. .+ ..+++|++..-|..+..
T Consensus 79 ~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 79 IDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred cCCccCCcchhcccceeeeehhhhhh
Confidence 2222 22 58999999999998886
No 155
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=59.96 E-value=6.1 Score=36.23 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q 014112 359 EPEQKVVQQDIVDMYMKSMQQF 380 (430)
Q Consensus 359 e~e~~~~q~~ivdMYmkSmQQF 380 (430)
|.|+++.|-|||+||.|=+-++
T Consensus 48 esekKIi~SqIVs~Y~kiFe~~ 69 (138)
T PF00714_consen 48 ESEKKIIQSQIVSFYLKIFENL 69 (138)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCT
T ss_pred ccchhhHHHHHHHHHHHHHHHc
Confidence 6789999999999999865443
No 156
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=50.09 E-value=23 Score=37.51 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=32.8
Q ss_pred eeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112 139 LLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA 185 (430)
Q Consensus 139 lIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~ 185 (430)
+||.+.||+..+...+...+.||++....-.....|.+ |.+.|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 58999999999776556778999997543222345666 67777665
No 157
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=47.73 E-value=1.7e+02 Score=33.43 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=90.5
Q ss_pred ccccCccccCccccchhhhccCCCCccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCee
Q 014112 27 FARSGSLTKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVF 106 (430)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvW 106 (430)
-.++|.+-+|-.-+|. .-++-.+-...-.++|.|..-++|+.... .-=+||+..+.+ ++.+|.-.. ..-|.|
T Consensus 314 r~s~~s~~~~~~ed~d-~~ltksdv~la~smevvvmevqglksvap--nrivyctmeveg---eklqtdqae--askp~w 385 (1218)
T KOG3543|consen 314 RTSSGSLNKGDSEDGD-VTLTKSDVSLALSMEVVVMEVQGLKSVAP--NRIVYCTMEVEG---EKLQTDQAE--ASKPKW 385 (1218)
T ss_pred hcccCCcccCCccccc-ceeeccceeEEeeeeEEEeeeccccccCC--CeeEEEEEEecc---cccccchhh--hcCCCC
Confidence 3455666555444433 22333334556788999999999998653 345899999987 577776554 589999
Q ss_pred cceEEEEeCcCCCceEEEEEEEEeecccc--cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112 107 NENLKLNVKTVESSLKCEIFMMSRVKNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG 184 (430)
Q Consensus 107 NEtF~F~V~~~d~~LkleV~v~v~Ded~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p 184 (430)
.-.--|.-.+.-.+++++++-.+ ...+ .|.-+|++.+--..= ..+-.+|+..... ..++--.+.+.|....
T Consensus 386 gtqgdfstthplpvvkvklftes--tgvlaledkelgrvil~ptpn---s~ks~ewh~mtvp--knsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 386 GTQGDFSTTHPLPVVKVKLFTES--TGVLALEDKELGRVILQPTPN---SAKSPEWHTMTVP--KNSQDQDLKIKLAVRM 458 (1218)
T ss_pred CcCCCcccCCCCceeEEEEEeec--ceeEEeechhhCeEEEecCCC---CcCCccceeeecC--CCCcCccceEEEEEec
Confidence 98777766654445555552221 2223 799999987643211 1233467665321 1234456777777777
Q ss_pred cCCCcc
Q 014112 185 ASPDVM 190 (430)
Q Consensus 185 ~~p~~~ 190 (430)
..|.-+
T Consensus 459 dkp~nm 464 (1218)
T KOG3543|consen 459 DKPPNM 464 (1218)
T ss_pred cCCCcc
Confidence 775433
No 158
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=46.33 E-value=1.5e+02 Score=31.70 Aligned_cols=117 Identities=13% Similarity=0.198 Sum_probs=70.9
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCe-ecceEEEEeCcCCCceEEEEEEEEeec
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPV-FNENLKLNVKTVESSLKCEIFMMSRVK 132 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPv-WNEtF~F~V~~~d~~LkleV~v~v~De 132 (430)
.-.|-|.|+.-.++.. ...-|+.+..+. ...+|..+.-+-.+-+ -.++..+.|...+..|++.| +-.
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr---~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~l----fKK 124 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDK---YDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDL----FTT 124 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCc---eEEEccccccCcCceEEEeeeeeeeeeecCceEEEEE----Eec
Confidence 3456666666555443 236777777653 4666655543223333 22566667777777777665 666
Q ss_pred ccccCceeEEEEEeCccccccCce--eeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112 133 NYLEDQLLGFTLVPLSEVLVKNGK--LEKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186 (430)
Q Consensus 133 d~v~DdlIG~a~VPLsdLl~~~~~--l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~ 186 (430)
..+....||.+.+.+..=.- .+. -++||-+. .+ +...++|+|++.=...+
T Consensus 125 kLvkk~hIgdI~InIn~dII-dk~FPKnkWy~c~-kD--Gq~~cRIqLSFhKL~ky 176 (508)
T PTZ00447 125 KLTKKVHIGQIKIDINASVI-SKSFPKNEWFVCF-KD--GQEICKVQMSFYKIQKY 176 (508)
T ss_pred cccceeEEEEEEecccHHHH-hccCCccceEEEe-cC--CceeeeEEEEehhhhhc
Confidence 66688999999999875443 233 35799994 33 23467777766544333
No 159
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=37.90 E-value=4.8 Score=45.13 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=56.2
Q ss_pred ccceEEEEEEEeccCCCCC----CCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEE
Q 014112 52 NFIGVLEVYIHQARDIHNI----CIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFM 127 (430)
Q Consensus 52 ~~~g~L~VtVisArnLkn~----di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v 127 (430)
+..|..-.++|.|.++.+. ...-+.++++...+.. +.++|+.-.. +.+|+|||. .|.+.+.+.
T Consensus 277 d~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~---~~frt~~~~~-~e~piyNe~-~~E~~~Fqs-------- 343 (975)
T KOG2419|consen 277 DFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE---QTFRTEISDD-TEKPIYNED-EREDSDFQS-------- 343 (975)
T ss_pred hhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecch---hhhhhhhhcc-ccccccccc-ccccccchh--------
Confidence 4567777888999988642 3346789999998865 6899998876 799999998 555554211
Q ss_pred EEeecccccCceeEEEEEeCcc
Q 014112 128 MSRVKNYLEDQLLGFTLVPLSE 149 (430)
Q Consensus 128 ~v~Ded~v~DdlIG~a~VPLsd 149 (430)
..+++..++|.+...|.+
T Consensus 344 ----n~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 344 ----NRYLGNKIVGYCELDLND 361 (975)
T ss_pred ----hHHHhhhccccccccccc
Confidence 112345566666666665
No 160
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=36.93 E-value=20 Score=41.72 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=46.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCc
Q 014112 53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKT 116 (430)
Q Consensus 53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~ 116 (430)
..|.|+|.+++|..|++. ..-||...+..-. ..+.+|+++.+ +.-|-||+.|+..+-.
T Consensus 757 ~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIE 816 (1112)
T ss_pred cccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhh
Confidence 479999999999999864 3667776553221 25889999998 7999999999998766
No 161
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=34.66 E-value=89 Score=29.00 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=48.8
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC----CeEEeeeecC-CCCCCeecceEEEEeCcCCCceEEEEEEE
Q 014112 54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE----NTVSTNIING-GGRNPVFNENLKLNVKTVESSLKCEIFMM 128 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~----~k~KTkVikn-gG~NPvWNEtF~F~V~~~d~~LkleV~v~ 128 (430)
.-.|+|+|-+.. |++...+ .|||+.|++..... ..+.|.+... .+.-=.||.+.+++.+-.+..=-+.|+|.
T Consensus 12 ~t~l~v~Iekig-lkda~~~--~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE 88 (147)
T PF14186_consen 12 MTYLSVFIEKIG-LKDASQY--IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFE 88 (147)
T ss_dssp --EEEEEEEEEE--TTGGG---EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEE
T ss_pred CceEEEEEEEEE-ECChHHc--cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEE
Confidence 457778877776 8876543 58999999975431 3555666522 23444566555554332111001123344
Q ss_pred Eeecccc--cCceeEEEEEeCcccccc
Q 014112 129 SRVKNYL--EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 129 v~Ded~v--~DdlIG~a~VPLsdLl~~ 153 (430)
+++.-.. .-...+++.+++.++..+
T Consensus 89 ~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 89 FKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEeeeccceeeeeeEEEEEEhhhccCC
Confidence 4665433 355689999999999874
No 162
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.94 E-value=15 Score=41.54 Aligned_cols=98 Identities=10% Similarity=-0.026 Sum_probs=50.0
Q ss_pred CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-cCceeEEEEEeCcccccc
Q 014112 75 KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 75 k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~ 153 (430)
..|||+-|.+.-. +-..+-+ +.-..+|.||++|++.|... ..+.+.| +..... .+.....+.+-..++...
T Consensus 27 al~~y~~v~vk~~--~~~~~~~-~~~~~~~~~~~~F~~~v~~~-~~~~i~v----~~~~~~~~~~~~a~~~~~~e~~k~~ 98 (694)
T KOG0694|consen 27 ALQPYLAVELKVK--QGAENMT-KVELRIPELRETFHVEVVAG-GAKNIIV----LLKSPDPKALSEAQLSLQEESQKLL 98 (694)
T ss_pred hhhhhheecccee--ecccccC-CCCCCCchhhhheeeeeecC-CceEEEE----EecCCcchhhHHHhHHHHHHHHHHH
Confidence 3578887777532 1212222 33479999999999997763 3333322 322111 111122222222222221
Q ss_pred CceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112 154 NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP 187 (430)
Q Consensus 154 ~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p 187 (430)
......|..+ .+.|++...+.+.....
T Consensus 99 ~~~~~~w~~~-------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 99 ALEQRLWVLI-------EELGTLLKPAALTGTLE 125 (694)
T ss_pred hhhhhhcccc-------ccccceeeeecccCcCC
Confidence 1122234444 26788888888887654
No 163
>PF04990 RNA_pol_Rpb1_7: RNA polymerase Rpb1, domain 7; InterPro: IPR007073 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 7, represents a mobile module of the RNA polymerase. Domain 7 interacts with the lobe domain of Rpb2 (IPR007642 from INTERPRO) [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 1Y77_A 3CQZ_A 3GTM_A 1TWA_A 4A3I_A 2NVY_A 2NVT_A 1I6H_A 1TWF_A ....
Probab=24.53 E-value=31 Score=31.35 Aligned_cols=21 Identities=38% Similarity=0.882 Sum_probs=18.3
Q ss_pred CCcc--cccccccchhhhccccc
Q 014112 220 PDPK--IVNENQMMVSEYFGISC 240 (430)
Q Consensus 220 pd~~--~~~en~~mvs~y~~~~~ 240 (430)
||+. |+.|++.||..||.++-
T Consensus 16 Pdp~~Tvi~eD~e~V~~y~e~pd 38 (135)
T PF04990_consen 16 PDPRNTVIEEDREFVESYFEIPD 38 (135)
T ss_dssp SSTTSSSSSTTHCHHHHCCCTT-
T ss_pred CCCCCCcchhhHHHHHHHHhCCC
Confidence 7776 99999999999999885
No 164
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=24.02 E-value=4.9e+02 Score=27.30 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=58.8
Q ss_pred ceEEEEEEEeccCCCCCC---CC---CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeec--ceEEEEeCcCCCceE---
Q 014112 54 IGVLEVYIHQARDIHNIC---IY---HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFN--ENLKLNVKTVESSLK--- 122 (430)
Q Consensus 54 ~g~L~VtVisArnLkn~d---i~---gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWN--EtF~F~V~~~d~~Lk--- 122 (430)
...|.|+|..|+||...- +- +....|-..+|.++ ...|.--++ -.+|.+- +.-.|+|......|+
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn---~Vt~~~F~~-l~~~~f~~er~s~vRirSS~~~L~~yf 266 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN---DVTTEPFKS-LSSPSFPPERASGVRIRSSLRVLRRYF 266 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc---EeEeeeccc-cCCCCcCeeeeeEEeecccHHHHHHHH
Confidence 568999999999998651 11 23577888888874 455555444 4677554 333377776322111
Q ss_pred ---EEEEEEEeecccccCceeEEEEEeCcccccc
Q 014112 123 ---CEIFMMSRVKNYLEDQLLGFTLVPLSEVLVK 153 (430)
Q Consensus 123 ---leV~v~v~Ded~v~DdlIG~a~VPLsdLl~~ 153 (430)
..|.+.+|. +++.||.+.|||..++..
T Consensus 267 ~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 267 QQIPKLQIHLCC----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred hhCCCeEEEEee----CCcEEEEEEEEhhhccCC
Confidence 123233343 588999999999999863
No 165
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=22.61 E-value=9.6e+02 Score=26.26 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCCCcEEEEEEeCCCCCeEEeeeecCCCCCC-eec---ceEEEEeCcCCC----c------eEEEEEEEEeeccc-----
Q 014112 74 HKQDVYAKLCLTSDPENTVSTNIINGGGRNP-VFN---ENLKLNVKTVES----S------LKCEIFMMSRVKNY----- 134 (430)
Q Consensus 74 gk~DPYVkVsL~~~p~~k~KTkVikngG~NP-vWN---EtF~F~V~~~d~----~------LkleV~v~v~Ded~----- 134 (430)
...-|||+|.|.+-|.++..-..+.....+| .-+ -.|++.-.+.+. . ..++| .+|.-+.
T Consensus 34 ssspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i--~VY~Gr~G~tCG 111 (460)
T PF06219_consen 34 SSSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEI--SVYTGRRGSTCG 111 (460)
T ss_pred CCCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEE--EEEECCCCCccc
Confidence 4568999999998775554444444333332 212 235554222111 0 22333 3354221
Q ss_pred --ccCceeEEEEEeCccccccCc----eeeEEEEccCCCCC--CCCCcEEEEEEEEEc
Q 014112 135 --LEDQLLGFTLVPLSEVLVKNG----KLEKEFSLSSTDLF--HSPAGFVQLSLAYAG 184 (430)
Q Consensus 135 --v~DdlIG~a~VPLsdLl~~~~----~l~~~f~Lss~dl~--~~p~G~I~LsLsf~p 184 (430)
..-++||.+.|||. +....+ -+..|..+...... ..+..+|||.+...|
T Consensus 112 v~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 112 VGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 14699999999998 333222 13468888543211 124678888888665
No 166
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=20.51 E-value=6.7e+02 Score=23.02 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=51.3
Q ss_pred EEEEeccCCCCCCCCCCCCcEEEEEEeCCC-------CC-eEEeeeecCC----CCCCeecceEEEEeCcCCCceEEEEE
Q 014112 59 VYIHQARDIHNICIYHKQDVYAKLCLTSDP-------EN-TVSTNIINGG----GRNPVFNENLKLNVKTVESSLKCEIF 126 (430)
Q Consensus 59 VtVisArnLkn~di~gk~DPYVkVsL~~~p-------~~-k~KTkVikng----G~NPvWNEtF~F~V~~~d~~LkleV~ 126 (430)
=.|.+|.+.. ..+.||+-.|...+ .. ...|.+.+.. +..=+||.-|.+.+.......-=.|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3567777544 45778887776432 23 4667766532 35678998777665542121101223
Q ss_pred EEEeecccc-cCceeEEEEEeCccc
Q 014112 127 MMSRVKNYL-EDQLLGFTLVPLSEV 150 (430)
Q Consensus 127 v~v~Ded~v-~DdlIG~a~VPLsdL 150 (430)
+.++..|.. ++.+.|...+.|.--
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeCCC
Confidence 344777766 799999988877543
Done!