Query 014114
Match_columns 430
No_of_seqs 605 out of 2900
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 02:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.1E-50 2.5E-55 337.9 26.5 316 15-373 128-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-45 1.4E-49 307.2 22.1 279 54-373 178-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.6E-43 3.4E-48 295.3 24.7 292 40-376 106-440 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.1E-42 1.3E-46 289.3 21.2 270 15-329 188-458 (459)
5 KOG0279 G protein beta subunit 100.0 2.1E-39 4.6E-44 260.1 31.1 296 40-375 6-313 (315)
6 KOG0286 G-protein beta subunit 100.0 4.2E-39 9.1E-44 259.9 32.6 291 42-373 48-343 (343)
7 KOG0315 G-protein beta subunit 100.0 2.9E-38 6.3E-43 249.4 31.7 296 9-354 5-308 (311)
8 KOG0295 WD40 repeat-containing 100.0 3.8E-38 8.2E-43 261.6 24.9 291 40-374 99-405 (406)
9 KOG0315 G-protein beta subunit 100.0 1E-36 2.2E-41 240.7 30.2 274 66-378 11-291 (311)
10 KOG0286 G-protein beta subunit 100.0 7.7E-37 1.7E-41 246.9 29.6 267 15-329 68-343 (343)
11 KOG0318 WD40 repeat stress pro 100.0 4.5E-36 9.8E-41 260.5 35.9 337 13-375 159-602 (603)
12 KOG0285 Pleiotropic regulator 100.0 3E-37 6.4E-42 255.8 26.6 294 40-377 142-441 (460)
13 KOG0319 WD40-repeat-containing 100.0 2E-37 4.4E-42 279.1 27.7 346 15-377 118-621 (775)
14 KOG0279 G protein beta subunit 100.0 1.4E-36 3.1E-41 243.8 29.6 276 14-331 28-313 (315)
15 KOG0284 Polyadenylation factor 100.0 1.1E-38 2.4E-43 268.5 18.0 283 54-378 99-383 (464)
16 KOG0263 Transcription initiati 100.0 2.1E-37 4.6E-42 281.6 21.7 207 158-380 447-654 (707)
17 KOG0273 Beta-transducin family 100.0 8.3E-36 1.8E-40 255.6 29.4 269 15-331 248-523 (524)
18 KOG0273 Beta-transducin family 100.0 1.4E-35 3E-40 254.2 30.4 313 16-374 193-522 (524)
19 KOG0296 Angio-associated migra 100.0 1.5E-35 3.3E-40 246.3 27.9 310 15-375 77-398 (399)
20 KOG0319 WD40-repeat-containing 100.0 3.7E-35 7.9E-40 264.6 31.1 336 14-377 74-579 (775)
21 KOG0295 WD40 repeat-containing 100.0 4.4E-35 9.5E-40 243.5 24.2 269 17-330 123-405 (406)
22 KOG0281 Beta-TrCP (transducin 100.0 8.6E-37 1.9E-41 252.2 14.0 269 13-337 206-483 (499)
23 KOG0291 WD40-repeat-containing 100.0 1.3E-33 2.9E-38 255.0 34.7 321 14-378 201-553 (893)
24 KOG0284 Polyadenylation factor 100.0 2.7E-36 5.9E-41 254.1 16.1 270 15-330 109-379 (464)
25 KOG0291 WD40-repeat-containing 100.0 2E-33 4.3E-38 253.9 35.6 332 13-377 106-510 (893)
26 PLN00181 protein SPA1-RELATED; 100.0 1.2E-33 2.5E-38 282.9 37.2 318 23-374 457-792 (793)
27 KOG0318 WD40 repeat stress pro 100.0 9.6E-33 2.1E-37 239.9 36.4 319 24-377 39-562 (603)
28 cd00200 WD40 WD40 domain, foun 100.0 6.3E-33 1.4E-37 246.0 36.7 286 43-373 3-289 (289)
29 KOG0265 U5 snRNP-specific prot 100.0 9.8E-34 2.1E-38 229.8 27.8 287 40-371 38-334 (338)
30 KOG0263 Transcription initiati 100.0 2.3E-34 4.9E-39 261.9 22.1 203 101-333 449-651 (707)
31 KOG0266 WD40 repeat-containing 100.0 6.1E-33 1.3E-37 258.7 31.7 287 49-376 159-455 (456)
32 KOG0316 Conserved WD40 repeat- 100.0 4.1E-33 8.8E-38 218.7 24.5 284 41-373 9-297 (307)
33 KOG0282 mRNA splicing factor [ 100.0 1.3E-34 2.8E-39 249.2 17.5 291 40-373 205-503 (503)
34 KOG0306 WD40-repeat-containing 100.0 8.2E-33 1.8E-37 249.8 29.3 319 16-376 337-665 (888)
35 KOG0276 Vesicle coat complex C 100.0 4.7E-33 1E-37 246.5 26.7 284 44-371 8-295 (794)
36 KOG0276 Vesicle coat complex C 100.0 1.3E-32 2.9E-37 243.7 27.2 328 4-376 13-381 (794)
37 KOG0265 U5 snRNP-specific prot 100.0 5.1E-32 1.1E-36 219.9 26.3 270 15-329 60-336 (338)
38 KOG0313 Microtubule binding pr 100.0 8E-32 1.7E-36 225.3 27.5 275 65-376 115-419 (423)
39 KOG0313 Microtubule binding pr 100.0 1.8E-31 3.9E-36 223.2 26.3 282 14-330 115-417 (423)
40 KOG0281 Beta-TrCP (transducin 100.0 1.3E-33 2.9E-38 233.4 13.4 273 54-380 200-482 (499)
41 KOG0275 Conserved WD40 repeat- 100.0 1.5E-32 3.3E-37 225.3 19.3 280 62-373 222-507 (508)
42 KOG0293 WD40 repeat-containing 100.0 1.2E-31 2.5E-36 226.6 24.6 291 41-376 216-514 (519)
43 cd00200 WD40 WD40 domain, foun 100.0 2.2E-30 4.7E-35 229.7 33.8 268 15-329 22-289 (289)
44 KOG0645 WD40 repeat protein [G 100.0 1.9E-30 4.2E-35 207.8 29.4 291 42-375 7-311 (312)
45 KOG0292 Vesicle coat complex C 100.0 2.3E-31 5E-36 244.5 26.5 280 54-375 12-321 (1202)
46 KOG0285 Pleiotropic regulator 100.0 1.4E-31 3.1E-36 222.2 21.9 243 101-377 149-391 (460)
47 KOG0306 WD40-repeat-containing 100.0 6.6E-31 1.4E-35 237.6 27.8 276 17-332 387-665 (888)
48 KOG0278 Serine/threonine kinas 100.0 1.8E-31 3.9E-36 211.3 20.0 293 43-380 8-302 (334)
49 KOG0282 mRNA splicing factor [ 100.0 6E-32 1.3E-36 232.8 18.7 269 16-329 229-503 (503)
50 KOG0266 WD40 repeat-containing 100.0 3.5E-30 7.5E-35 240.3 29.9 246 103-377 159-411 (456)
51 KOG1407 WD40 repeat protein [F 100.0 5E-30 1.1E-34 204.4 26.2 279 43-366 14-293 (313)
52 KOG0643 Translation initiation 100.0 2.5E-30 5.3E-35 206.8 23.7 287 44-376 5-318 (327)
53 KOG1446 Histone H3 (Lys4) meth 100.0 7.5E-29 1.6E-33 203.4 32.7 288 42-375 7-303 (311)
54 KOG0293 WD40 repeat-containing 100.0 5E-31 1.1E-35 222.8 20.5 273 15-331 237-513 (519)
55 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.4E-34 233.5 30.6 279 15-331 22-321 (1202)
56 KOG0274 Cdc4 and related F-box 100.0 6.8E-30 1.5E-34 237.4 29.3 272 14-339 218-490 (537)
57 PLN00181 protein SPA1-RELATED; 100.0 2.9E-29 6.3E-34 251.3 35.4 274 15-330 496-792 (793)
58 KOG0277 Peroxisomal targeting 100.0 2.9E-30 6.3E-35 204.9 21.2 267 73-374 36-308 (311)
59 KOG0316 Conserved WD40 repeat- 100.0 5.5E-30 1.2E-34 201.2 22.0 241 103-378 17-260 (307)
60 KOG1408 WD40 repeat protein [F 100.0 1.7E-29 3.6E-34 227.4 26.0 354 3-376 259-714 (1080)
61 KOG1539 WD repeat protein [Gen 100.0 1.5E-28 3.3E-33 224.9 31.5 322 15-375 173-648 (910)
62 KOG0294 WD40 repeat-containing 100.0 2.8E-28 6.1E-33 199.5 28.3 274 14-333 1-283 (362)
63 KOG0645 WD40 repeat protein [G 100.0 5.2E-28 1.1E-32 193.9 28.7 241 104-376 15-262 (312)
64 KOG0310 Conserved WD40 repeat- 100.0 1.1E-28 2.3E-33 213.2 26.4 278 54-376 29-310 (487)
65 KOG0296 Angio-associated migra 100.0 2.8E-28 6E-33 203.2 27.3 292 41-378 56-359 (399)
66 KOG0268 Sof1-like rRNA process 100.0 4.5E-30 9.7E-35 213.7 16.2 272 15-338 80-352 (433)
67 KOG0277 Peroxisomal targeting 100.0 2.4E-29 5.2E-34 199.8 19.1 269 22-330 36-308 (311)
68 KOG0283 WD40 repeat-containing 100.0 3.4E-29 7.3E-34 230.2 22.8 302 43-376 260-577 (712)
69 KOG0268 Sof1-like rRNA process 100.0 7.1E-30 1.5E-34 212.5 16.5 288 40-377 57-347 (433)
70 KOG0289 mRNA splicing factor [ 100.0 3.7E-28 8E-33 206.8 26.0 281 54-374 222-505 (506)
71 KOG0308 Conserved WD40 repeat- 100.0 4.7E-29 1E-33 222.3 19.9 298 49-376 21-328 (735)
72 KOG0300 WD40 repeat-containing 100.0 5E-28 1.1E-32 198.3 23.6 318 12-376 122-477 (481)
73 KOG0288 WD40 repeat protein Ti 100.0 3.4E-29 7.5E-34 211.8 17.3 266 15-328 188-458 (459)
74 KOG0274 Cdc4 and related F-box 100.0 6.2E-28 1.4E-32 224.4 27.4 266 65-379 218-486 (537)
75 KOG0288 WD40 repeat protein Ti 100.0 1.4E-28 3E-33 208.2 18.5 286 42-373 168-459 (459)
76 PTZ00421 coronin; Provisional 100.0 7.2E-27 1.6E-31 217.1 31.9 205 160-377 73-292 (493)
77 KOG0973 Histone transcription 100.0 2.6E-27 5.6E-32 223.4 28.4 307 43-376 6-356 (942)
78 KOG0643 Translation initiation 100.0 8.7E-28 1.9E-32 192.3 21.2 274 16-331 24-317 (327)
79 KOG0305 Anaphase promoting com 100.0 2.2E-27 4.8E-32 212.7 26.4 271 17-334 190-464 (484)
80 KOG0772 Uncharacterized conser 100.0 9.8E-28 2.1E-32 208.4 23.1 287 14-328 179-484 (641)
81 KOG0305 Anaphase promoting com 100.0 4.1E-27 8.8E-32 211.0 27.5 268 66-377 189-463 (484)
82 KOG0310 Conserved WD40 repeat- 100.0 3.9E-27 8.5E-32 203.5 26.2 274 8-331 34-309 (487)
83 KOG0308 Conserved WD40 repeat- 100.0 4.5E-28 9.7E-33 216.1 21.0 337 8-376 30-394 (735)
84 KOG0640 mRNA cleavage stimulat 100.0 9.9E-28 2.2E-32 195.9 21.0 301 46-376 109-427 (430)
85 KOG1407 WD40 repeat protein [F 100.0 1.7E-26 3.7E-31 184.3 27.4 263 12-323 30-294 (313)
86 KOG0301 Phospholipase A2-activ 100.0 2.4E-27 5.3E-32 212.9 25.3 285 40-377 5-290 (745)
87 KOG0278 Serine/threonine kinas 100.0 2.8E-28 6.1E-33 193.2 16.7 278 9-336 23-302 (334)
88 PTZ00421 coronin; Provisional 100.0 4.4E-26 9.5E-31 211.9 33.5 274 64-360 31-317 (493)
89 PTZ00420 coronin; Provisional 100.0 4.8E-26 1E-30 212.5 33.0 202 160-376 72-294 (568)
90 KOG0772 Uncharacterized conser 100.0 3.2E-27 7E-32 205.2 22.2 301 52-375 168-487 (641)
91 PTZ00420 coronin; Provisional 100.0 1.1E-25 2.3E-30 210.2 33.9 260 70-360 49-320 (568)
92 KOG0275 Conserved WD40 repeat- 100.0 7.5E-28 1.6E-32 197.8 16.5 271 15-329 226-507 (508)
93 KOG2096 WD40 repeat protein [G 100.0 5.4E-26 1.2E-30 186.5 26.7 303 41-376 78-403 (420)
94 KOG0289 mRNA splicing factor [ 100.0 5.4E-26 1.2E-30 193.7 26.7 270 15-330 232-505 (506)
95 KOG0647 mRNA export protein (c 100.0 3E-26 6.5E-31 186.6 24.1 269 47-360 25-307 (347)
96 KOG0641 WD40 repeat protein [G 100.0 1.5E-24 3.2E-29 169.9 30.8 292 53-375 34-349 (350)
97 KOG1036 Mitotic spindle checkp 100.0 1E-25 2.2E-30 184.2 25.0 264 54-364 16-293 (323)
98 KOG0299 U3 snoRNP-associated p 100.0 8.7E-26 1.9E-30 193.9 25.7 296 42-376 135-457 (479)
99 KOG1408 WD40 repeat protein [F 100.0 2.6E-26 5.6E-31 207.0 23.4 289 12-332 390-714 (1080)
100 KOG0264 Nucleosome remodeling 99.9 6E-26 1.3E-30 194.8 22.8 239 124-376 138-405 (422)
101 KOG0639 Transducin-like enhanc 99.9 2.2E-26 4.9E-31 199.5 19.4 282 48-374 418-703 (705)
102 KOG0301 Phospholipase A2-activ 99.9 2.2E-25 4.9E-30 200.4 25.1 263 13-331 24-288 (745)
103 KOG1446 Histone H3 (Lys4) meth 99.9 3.5E-24 7.7E-29 176.1 29.8 270 15-331 27-303 (311)
104 KOG0973 Histone transcription 99.9 3.1E-25 6.8E-30 209.5 26.8 284 15-333 26-357 (942)
105 KOG0283 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 207.0 23.0 197 104-332 370-577 (712)
106 KOG0299 U3 snoRNP-associated p 99.9 3.2E-25 6.8E-30 190.5 24.0 276 9-329 147-454 (479)
107 KOG0264 Nucleosome remodeling 99.9 2.4E-25 5.3E-30 191.0 22.8 238 66-331 138-404 (422)
108 KOG2106 Uncharacterized conser 99.9 6.7E-24 1.4E-28 184.3 31.6 319 18-376 216-582 (626)
109 KOG2106 Uncharacterized conser 99.9 1.8E-24 3.9E-29 187.8 27.8 317 13-374 256-625 (626)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-23 3.6E-28 187.4 35.3 284 17-356 4-300 (300)
111 KOG3881 Uncharacterized conser 99.9 5.7E-25 1.2E-29 185.4 23.2 274 56-348 60-337 (412)
112 KOG2055 WD40 repeat protein [G 99.9 3.8E-25 8.2E-30 190.0 22.3 293 48-375 210-512 (514)
113 KOG0267 Microtubule severing p 99.9 5.4E-27 1.2E-31 211.6 10.2 258 66-370 5-262 (825)
114 KOG1539 WD repeat protein [Gen 99.9 3.7E-23 8E-28 189.9 34.6 332 16-378 126-609 (910)
115 KOG0646 WD40 repeat protein [G 99.9 9E-25 2E-29 188.0 22.6 270 71-378 13-310 (476)
116 KOG1332 Vesicle coat complex C 99.9 5.4E-25 1.2E-29 174.1 19.5 237 124-376 24-287 (299)
117 KOG0640 mRNA cleavage stimulat 99.9 5E-25 1.1E-29 180.2 19.9 282 15-330 125-425 (430)
118 KOG0269 WD40 repeat-containing 99.9 4E-25 8.7E-30 201.1 21.0 233 122-374 99-339 (839)
119 KOG0646 WD40 repeat protein [G 99.9 8.2E-25 1.8E-29 188.3 21.8 270 22-330 59-349 (476)
120 KOG1274 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 194.6 29.9 263 48-360 12-284 (933)
121 KOG0639 Transducin-like enhanc 99.9 5.8E-25 1.3E-29 190.8 19.0 275 12-330 429-703 (705)
122 KOG4283 Transcription-coupled 99.9 2.4E-23 5.2E-28 169.2 26.7 293 47-374 41-364 (397)
123 KOG1063 RNA polymerase II elon 99.9 1.1E-23 2.3E-28 189.7 27.1 334 13-377 205-650 (764)
124 KOG1036 Mitotic spindle checkp 99.9 1.6E-23 3.5E-28 171.4 24.9 257 15-321 26-294 (323)
125 KOG0294 WD40 repeat-containing 99.9 7.3E-24 1.6E-28 173.8 22.7 237 6-290 45-283 (362)
126 KOG0647 mRNA export protein (c 99.9 2.4E-23 5.2E-28 169.8 24.7 261 16-320 42-312 (347)
127 KOG1332 Vesicle coat complex C 99.9 4.9E-24 1.1E-28 168.7 18.8 237 15-330 24-285 (299)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.8E-22 1.5E-26 177.0 35.1 268 66-378 2-282 (300)
129 KOG0300 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 172.5 20.7 277 16-333 162-478 (481)
130 KOG0650 WD40 repeat nucleolar 99.9 2.3E-23 4.9E-28 184.6 23.6 299 41-373 392-733 (733)
131 KOG0641 WD40 repeat protein [G 99.9 6E-22 1.3E-26 155.3 27.3 252 104-377 33-305 (350)
132 KOG2055 WD40 repeat protein [G 99.9 6.5E-23 1.4E-27 176.4 21.5 277 15-331 226-512 (514)
133 KOG0321 WD40 repeat-containing 99.9 2.5E-22 5.5E-27 179.3 24.7 294 16-333 66-393 (720)
134 KOG2048 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 174.6 29.8 321 15-376 38-412 (691)
135 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-22 2.6E-27 176.3 21.0 296 15-358 5-305 (673)
136 KOG0321 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 179.4 23.0 310 48-379 46-395 (720)
137 KOG0269 WD40 repeat-containing 99.9 6.8E-23 1.5E-27 186.8 18.9 272 24-334 60-343 (839)
138 KOG0270 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 167.2 23.9 257 106-376 176-450 (463)
139 KOG2048 WD40 repeat protein [G 99.9 8.6E-21 1.9E-25 170.8 29.3 283 48-373 24-317 (691)
140 KOG1273 WD40 repeat protein [G 99.9 2.1E-21 4.5E-26 159.5 22.5 279 62-376 32-323 (405)
141 KOG2445 Nuclear pore complex c 99.9 8.2E-21 1.8E-25 155.5 25.7 282 47-344 11-334 (361)
142 KOG0270 WD40 repeat-containing 99.9 6.1E-22 1.3E-26 169.7 19.8 245 64-338 191-456 (463)
143 KOG1274 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 179.9 25.3 242 104-376 14-263 (933)
144 KOG4283 Transcription-coupled 99.9 1.4E-21 3.1E-26 159.0 19.7 219 160-383 41-284 (397)
145 KOG4378 Nuclear protein COP1 [ 99.9 9.1E-22 2E-26 170.9 19.6 273 68-378 5-283 (673)
146 KOG0267 Microtubule severing p 99.9 2.3E-23 5.1E-28 188.4 9.4 199 161-375 27-226 (825)
147 KOG0307 Vesicle coat complex C 99.9 2.2E-22 4.7E-27 191.4 15.2 255 104-378 65-330 (1049)
148 KOG4328 WD40 protein [Function 99.9 3E-21 6.5E-26 166.1 20.4 254 104-378 187-453 (498)
149 KOG2445 Nuclear pore complex c 99.9 2.2E-20 4.9E-25 153.0 23.8 251 101-376 11-319 (361)
150 KOG2919 Guanine nucleotide-bin 99.9 1.7E-20 3.7E-25 154.7 23.1 289 61-365 57-359 (406)
151 KOG0302 Ribosome Assembly prot 99.9 1.1E-20 2.4E-25 158.8 22.3 250 47-328 149-435 (440)
152 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.7E-25 161.4 23.9 295 48-375 185-495 (498)
153 KOG1063 RNA polymerase II elon 99.9 7.7E-20 1.7E-24 165.1 26.9 324 13-375 23-391 (764)
154 KOG2096 WD40 repeat protein [G 99.9 8.3E-21 1.8E-25 156.2 18.9 211 160-380 84-313 (420)
155 KOG1034 Transcriptional repres 99.9 4.6E-20 1E-24 152.5 22.9 300 48-375 37-383 (385)
156 KOG1273 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 149.5 23.6 274 15-331 36-322 (405)
157 KOG1188 WD40 repeat protein [G 99.9 2.4E-20 5.1E-25 155.0 19.9 281 15-330 41-345 (376)
158 KOG0650 WD40 repeat nucleolar 99.9 3.3E-20 7.1E-25 164.8 21.7 275 15-328 413-732 (733)
159 KOG1188 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 153.6 20.6 280 66-376 41-347 (376)
160 KOG1034 Transcriptional repres 99.9 6.3E-20 1.4E-24 151.7 21.2 285 17-331 58-383 (385)
161 KOG0302 Ribosome Assembly prot 99.9 1.3E-20 2.7E-25 158.5 17.4 206 158-379 147-382 (440)
162 KOG1517 Guanine nucleotide bin 99.9 2.7E-19 5.8E-24 168.8 26.5 291 62-377 1073-1383(1387)
163 KOG0307 Vesicle coat complex C 99.9 6.1E-21 1.3E-25 181.6 15.6 284 21-334 36-330 (1049)
164 KOG0322 G-protein beta subunit 99.9 7.7E-20 1.7E-24 146.7 17.3 265 42-330 7-322 (323)
165 KOG1538 Uncharacterized conser 99.8 1.8E-19 3.8E-24 162.2 21.2 272 53-375 14-293 (1081)
166 KOG1007 WD repeat protein TSSC 99.8 3.4E-19 7.3E-24 144.9 20.1 232 134-375 94-361 (370)
167 KOG0649 WD40 repeat protein [G 99.8 2.5E-18 5.3E-23 136.6 23.5 280 54-373 13-314 (325)
168 KOG2919 Guanine nucleotide-bin 99.8 4.8E-19 1E-23 146.2 19.9 282 15-323 62-362 (406)
169 KOG1445 Tumor-specific antigen 99.8 9.7E-19 2.1E-23 156.6 22.6 161 213-377 627-800 (1012)
170 KOG1009 Chromatin assembly com 99.8 2.4E-18 5.1E-23 146.3 22.0 295 15-335 27-376 (434)
171 KOG0303 Actin-binding protein 99.8 5.7E-19 1.2E-23 149.5 18.0 204 160-377 79-296 (472)
172 KOG1517 Guanine nucleotide bin 99.8 2.5E-18 5.4E-23 162.3 23.8 286 16-334 1078-1384(1387)
173 COG2319 FOG: WD40 repeat [Gene 99.8 4.6E-16 9.9E-21 146.2 39.1 314 16-378 79-403 (466)
174 KOG0649 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 132.7 23.4 237 124-376 23-275 (325)
175 KOG2110 Uncharacterized conser 99.8 2.3E-16 5E-21 132.9 31.0 230 62-332 14-249 (391)
176 KOG1009 Chromatin assembly com 99.8 1.2E-17 2.6E-22 142.1 23.2 284 67-376 28-373 (434)
177 KOG1007 WD repeat protein TSSC 99.8 9.5E-18 2.1E-22 136.5 20.5 287 15-331 27-361 (370)
178 KOG0642 Cell-cycle nuclear pro 99.8 8.3E-19 1.8E-23 155.1 15.4 258 103-376 294-562 (577)
179 KOG1587 Cytoplasmic dynein int 99.8 1.5E-17 3.2E-22 154.2 23.6 280 75-376 222-517 (555)
180 COG2319 FOG: WD40 repeat [Gene 99.8 2.4E-15 5.3E-20 141.2 38.0 294 45-378 61-362 (466)
181 KOG0290 Conserved WD40 repeat- 99.8 5.2E-17 1.1E-21 132.4 22.1 296 54-372 47-362 (364)
182 KOG1587 Cytoplasmic dynein int 99.8 6E-17 1.3E-21 150.2 25.5 286 23-332 221-517 (555)
183 PRK11028 6-phosphogluconolacto 99.8 9.5E-16 2.1E-20 138.8 32.7 268 69-376 6-305 (330)
184 KOG0642 Cell-cycle nuclear pro 99.8 7.2E-18 1.6E-22 149.2 16.6 291 17-338 245-568 (577)
185 KOG1538 Uncharacterized conser 99.8 4.9E-17 1.1E-21 146.7 22.1 258 24-331 33-293 (1081)
186 PRK11028 6-phosphogluconolacto 99.8 1.9E-15 4.1E-20 136.8 32.7 280 17-331 5-304 (330)
187 KOG1524 WD40 repeat-containing 99.8 5.9E-17 1.3E-21 142.6 20.5 208 122-371 74-282 (737)
188 KOG0322 G-protein beta subunit 99.8 2.1E-17 4.6E-22 132.9 15.7 237 124-374 26-322 (323)
189 KOG1963 WD40 repeat protein [G 99.8 2E-15 4.4E-20 140.7 30.6 330 12-376 169-539 (792)
190 KOG0303 Actin-binding protein 99.8 3.2E-17 7E-22 139.0 17.1 164 211-379 79-253 (472)
191 KOG1272 WD40-repeat-containing 99.8 2.8E-18 6.1E-23 148.3 10.6 254 62-360 138-393 (545)
192 KOG0290 Conserved WD40 repeat- 99.8 6.8E-16 1.5E-20 126.0 23.5 284 15-327 60-361 (364)
193 KOG2110 Uncharacterized conser 99.8 1.8E-15 3.8E-20 127.7 26.1 195 164-378 48-251 (391)
194 KOG1963 WD40 repeat protein [G 99.8 2.7E-15 5.9E-20 139.9 29.9 329 15-377 28-377 (792)
195 KOG4227 WD40 repeat protein [G 99.8 3.4E-16 7.4E-21 132.8 21.8 299 45-376 52-388 (609)
196 KOG1334 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 143.6 14.9 303 43-376 136-467 (559)
197 KOG0644 Uncharacterized conser 99.7 8.2E-18 1.8E-22 155.1 11.9 283 42-375 183-468 (1113)
198 KOG1445 Tumor-specific antigen 99.7 1.9E-17 4.2E-22 148.4 13.2 237 129-376 599-845 (1012)
199 KOG1524 WD40 repeat-containing 99.7 1.7E-16 3.8E-21 139.7 18.7 208 66-328 76-283 (737)
200 KOG1310 WD40 repeat protein [G 99.7 4.2E-16 9E-21 137.7 20.8 230 42-290 43-305 (758)
201 KOG0771 Prolactin regulatory e 99.7 9.1E-17 2E-21 137.6 15.7 190 124-332 157-355 (398)
202 KOG0771 Prolactin regulatory e 99.7 1.2E-16 2.6E-21 136.9 16.1 195 166-376 148-355 (398)
203 KOG1240 Protein kinase contain 99.7 2E-15 4.4E-20 145.1 25.1 271 29-377 1034-1336(1431)
204 KOG1240 Protein kinase contain 99.7 3.8E-15 8.3E-20 143.3 24.8 285 15-329 1062-1431(1431)
205 PF02239 Cytochrom_D1: Cytochr 99.7 9E-14 2E-18 125.6 31.7 282 15-379 7-351 (369)
206 KOG2394 WD40 protein DMR-N9 [G 99.7 8.6E-16 1.9E-20 135.4 17.3 174 172-355 183-383 (636)
207 PRK01742 tolB translocation pr 99.7 3.1E-15 6.6E-20 139.6 22.1 235 23-357 183-426 (429)
208 KOG2111 Uncharacterized conser 99.7 1.4E-13 3.1E-18 114.0 28.1 160 161-332 93-257 (346)
209 KOG1523 Actin-related protein 99.7 1.9E-15 4.2E-20 125.0 16.9 202 162-377 10-238 (361)
210 KOG2394 WD40 protein DMR-N9 [G 99.7 2.9E-15 6.2E-20 132.2 18.8 184 61-268 181-384 (636)
211 KOG2321 WD40 repeat protein [G 99.7 1.8E-14 3.8E-19 128.3 23.7 276 54-376 54-344 (703)
212 KOG2139 WD40 repeat protein [G 99.7 4.3E-14 9.3E-19 119.0 23.5 287 56-374 103-430 (445)
213 KOG4227 WD40 repeat protein [G 99.7 1.3E-14 2.8E-19 123.3 20.1 258 101-378 54-325 (609)
214 KOG1523 Actin-related protein 99.7 9.9E-15 2.2E-19 120.9 18.8 241 104-373 11-276 (361)
215 KOG0974 WD-repeat protein WDR6 99.7 5.2E-15 1.1E-19 140.4 19.3 271 66-377 18-290 (967)
216 PRK01742 tolB translocation pr 99.7 8.8E-15 1.9E-19 136.6 20.3 191 161-375 202-401 (429)
217 KOG1334 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 132.1 14.2 288 15-332 155-467 (559)
218 KOG1272 WD40-repeat-containing 99.6 4.3E-16 9.3E-21 134.9 8.7 220 124-374 142-361 (545)
219 KOG1310 WD40 repeat protein [G 99.6 5.1E-15 1.1E-19 131.0 14.7 209 160-378 48-306 (758)
220 PF08662 eIF2A: Eukaryotic tra 99.6 6.7E-14 1.5E-18 115.0 20.2 116 214-339 60-186 (194)
221 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.2E-20 140.6 11.3 269 15-335 203-472 (1113)
222 PF08662 eIF2A: Eukaryotic tra 99.6 3.7E-14 8.1E-19 116.5 18.1 148 218-376 10-180 (194)
223 PF02239 Cytochrom_D1: Cytochr 99.6 3.5E-13 7.7E-18 121.8 26.1 294 16-340 50-356 (369)
224 KOG4497 Uncharacterized conser 99.6 1.2E-13 2.6E-18 115.0 20.9 270 62-376 17-392 (447)
225 KOG2111 Uncharacterized conser 99.6 4.7E-13 1E-17 111.1 23.1 177 184-377 75-258 (346)
226 PRK03629 tolB translocation pr 99.6 8.9E-13 1.9E-17 122.9 26.2 169 167-356 247-427 (429)
227 KOG3881 Uncharacterized conser 99.6 1.4E-13 3.1E-18 117.1 18.8 207 67-312 117-342 (412)
228 PRK03629 tolB translocation pr 99.6 3.3E-12 7.2E-17 119.0 25.7 195 161-376 197-407 (429)
229 KOG2139 WD40 repeat protein [G 99.6 6.9E-13 1.5E-17 111.9 18.5 191 163-371 99-307 (445)
230 PRK05137 tolB translocation pr 99.5 1.2E-11 2.5E-16 116.1 26.9 196 160-376 199-413 (435)
231 KOG0974 WD-repeat protein WDR6 99.5 2.2E-12 4.7E-17 122.9 21.5 190 124-332 100-289 (967)
232 PRK02889 tolB translocation pr 99.5 3.7E-12 8E-17 118.9 23.0 184 161-365 194-390 (427)
233 PRK04922 tolB translocation pr 99.5 6.3E-12 1.4E-16 117.7 24.3 169 167-356 252-432 (433)
234 KOG1354 Serine/threonine prote 99.5 2.5E-12 5.5E-17 107.8 18.2 265 54-333 28-361 (433)
235 KOG4497 Uncharacterized conser 99.5 1.6E-11 3.6E-16 102.5 22.8 306 9-368 14-425 (447)
236 PRK04922 tolB translocation pr 99.5 9.8E-12 2.1E-16 116.4 23.8 195 161-376 202-412 (433)
237 PRK05137 tolB translocation pr 99.5 2.7E-11 5.8E-16 113.7 26.6 170 165-356 248-432 (435)
238 TIGR03300 assembly_YfgL outer 99.5 1.5E-10 3.3E-15 106.8 31.2 308 12-372 63-376 (377)
239 PRK02889 tolB translocation pr 99.5 1.4E-11 3.1E-16 114.9 24.5 171 166-357 243-425 (427)
240 KOG2321 WD40 repeat protein [G 99.5 7.3E-12 1.6E-16 111.9 21.0 274 15-332 65-344 (703)
241 KOG4547 WD40 repeat-containing 99.5 1.2E-11 2.5E-16 111.2 22.1 213 63-332 3-221 (541)
242 KOG4547 WD40 repeat-containing 99.5 1.1E-11 2.3E-16 111.4 19.4 192 172-376 3-221 (541)
243 PF10282 Lactonase: Lactonase, 99.4 4.6E-09 9.9E-14 95.3 36.7 282 24-338 13-331 (345)
244 PF10282 Lactonase: Lactonase, 99.4 3.5E-09 7.7E-14 96.1 35.7 242 125-376 50-323 (345)
245 KOG0280 Uncharacterized conser 99.4 8.7E-11 1.9E-15 96.7 21.2 276 23-333 45-335 (339)
246 KOG0280 Uncharacterized conser 99.4 5.5E-11 1.2E-15 97.9 19.5 273 73-373 44-331 (339)
247 TIGR02800 propeller_TolB tol-p 99.4 1.7E-10 3.7E-15 108.3 25.0 185 161-366 188-385 (417)
248 KOG1354 Serine/threonine prote 99.4 3.9E-11 8.4E-16 100.9 17.7 256 104-376 26-360 (433)
249 TIGR02658 TTQ_MADH_Hv methylam 99.4 8.3E-09 1.8E-13 91.5 33.1 289 10-339 8-338 (352)
250 KOG2315 Predicted translation 99.4 6E-10 1.3E-14 99.7 25.5 306 14-376 45-391 (566)
251 KOG1064 RAVE (regulator of V-A 99.4 4.5E-12 9.7E-17 126.8 12.8 184 123-339 2220-2406(2439)
252 TIGR02800 propeller_TolB tol-p 99.4 9.5E-10 2.1E-14 103.2 27.2 155 166-338 237-403 (417)
253 KOG1409 Uncharacterized conser 99.4 3.2E-10 6.9E-15 95.5 20.7 231 16-289 38-271 (404)
254 PRK00178 tolB translocation pr 99.4 3.4E-10 7.4E-15 106.4 23.7 194 161-375 197-406 (430)
255 KOG1064 RAVE (regulator of V-A 99.4 2E-11 4.3E-16 122.4 15.6 187 162-377 2208-2400(2439)
256 KOG2315 Predicted translation 99.3 1.1E-09 2.5E-14 98.0 22.6 150 183-356 250-410 (566)
257 PRK04792 tolB translocation pr 99.3 6.2E-10 1.4E-14 104.3 22.3 193 162-375 217-425 (448)
258 TIGR03300 assembly_YfgL outer 99.3 2.9E-09 6.3E-14 98.4 26.3 261 12-328 103-376 (377)
259 PRK00178 tolB translocation pr 99.3 2.5E-09 5.3E-14 100.6 26.2 169 167-356 247-427 (430)
260 COG5354 Uncharacterized protei 99.3 1.2E-08 2.5E-13 90.6 27.8 309 15-377 44-397 (561)
261 KOG4532 WD40-like repeat conta 99.3 2.5E-09 5.5E-14 87.2 21.7 218 124-360 85-316 (344)
262 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.1E-08 1.5E-12 85.6 32.7 259 75-377 27-332 (352)
263 KOG2314 Translation initiation 99.3 5.7E-09 1.2E-13 93.5 25.1 297 26-376 233-574 (698)
264 PRK04792 tolB translocation pr 99.3 2.6E-09 5.7E-14 100.2 24.5 169 167-356 266-446 (448)
265 KOG4532 WD40-like repeat conta 99.3 4E-09 8.6E-14 86.0 21.4 234 66-333 85-333 (344)
266 PRK01029 tolB translocation pr 99.2 2E-08 4.4E-13 93.4 28.6 179 163-358 231-426 (428)
267 PRK01029 tolB translocation pr 99.2 4.4E-09 9.6E-14 97.8 22.3 197 163-376 185-404 (428)
268 COG2706 3-carboxymuconate cycl 99.2 8.7E-07 1.9E-11 76.0 33.5 280 23-336 15-328 (346)
269 PRK11138 outer membrane biogen 99.2 3.5E-08 7.7E-13 91.5 27.9 314 13-374 68-393 (394)
270 KOG2041 WD40 repeat protein [G 99.2 2.1E-09 4.5E-14 99.1 18.4 277 15-330 27-336 (1189)
271 KOG1409 Uncharacterized conser 99.2 2.3E-09 4.9E-14 90.5 16.8 254 40-332 15-271 (404)
272 PLN02919 haloacid dehalogenase 99.2 1.2E-07 2.7E-12 97.3 32.1 245 125-378 582-891 (1057)
273 COG2706 3-carboxymuconate cycl 99.2 9.4E-07 2E-11 75.8 31.9 280 74-377 15-323 (346)
274 KOG2695 WD40 repeat protein [G 99.2 2.4E-10 5.2E-15 96.3 9.8 165 178-356 228-402 (425)
275 PLN02919 haloacid dehalogenase 99.2 1.6E-07 3.5E-12 96.5 32.1 261 64-335 579-892 (1057)
276 KOG2041 WD40 repeat protein [G 99.1 1.3E-08 2.8E-13 94.0 21.5 287 54-375 17-337 (1189)
277 PF15492 Nbas_N: Neuroblastoma 99.1 9.5E-08 2.1E-12 79.3 24.3 210 122-341 7-269 (282)
278 KOG1912 WD40 repeat protein [G 99.1 2.7E-08 5.8E-13 92.8 23.4 328 14-376 79-552 (1062)
279 KOG3914 WD repeat protein WDR4 99.1 6.7E-10 1.5E-14 95.6 12.0 160 166-339 66-231 (390)
280 KOG1912 WD40 repeat protein [G 99.1 1.8E-07 3.9E-12 87.5 28.1 242 16-288 27-304 (1062)
281 PF04762 IKI3: IKI3 family; I 99.1 4.8E-07 1E-11 91.4 33.7 291 52-376 76-457 (928)
282 PF04762 IKI3: IKI3 family; I 99.1 1.7E-07 3.7E-12 94.5 30.2 252 102-373 74-377 (928)
283 COG5170 CDC55 Serine/threonine 99.1 2.3E-09 5E-14 89.3 13.9 284 15-330 39-366 (460)
284 KOG0309 Conserved WD40 repeat- 99.1 1.3E-09 2.9E-14 100.6 12.9 279 62-376 33-340 (1081)
285 COG5354 Uncharacterized protei 99.1 1.6E-07 3.4E-12 83.7 24.9 275 23-360 107-413 (561)
286 PRK11138 outer membrane biogen 99.1 1.7E-07 3.8E-12 86.9 26.9 261 14-330 120-393 (394)
287 PRK04043 tolB translocation pr 99.0 1.6E-07 3.4E-12 87.0 23.7 175 163-360 188-381 (419)
288 KOG4714 Nucleoporin [Nuclear s 99.0 2.7E-08 5.8E-13 81.0 16.0 215 41-289 27-255 (319)
289 PF13360 PQQ_2: PQQ-like domai 99.0 7.3E-07 1.6E-11 76.7 26.5 224 74-338 2-237 (238)
290 COG4946 Uncharacterized protei 99.0 5.4E-07 1.2E-11 79.7 24.0 227 62-320 275-507 (668)
291 COG4946 Uncharacterized protei 99.0 1.5E-07 3.3E-12 83.1 20.1 167 173-360 331-502 (668)
292 COG5170 CDC55 Serine/threonine 99.0 8.8E-09 1.9E-13 85.8 11.7 215 162-377 26-311 (460)
293 KOG4190 Uncharacterized conser 99.0 3.1E-09 6.8E-14 95.2 9.4 250 99-376 731-989 (1034)
294 KOG4190 Uncharacterized conser 98.9 1.1E-08 2.5E-13 91.6 11.9 273 15-327 748-1032(1034)
295 cd00216 PQQ_DH Dehydrogenases 98.9 7.6E-06 1.7E-10 77.9 30.5 302 14-360 61-451 (488)
296 KOG4714 Nucleoporin [Nuclear s 98.9 5.4E-08 1.2E-12 79.3 12.9 147 172-331 99-254 (319)
297 PF15492 Nbas_N: Neuroblastoma 98.9 5.3E-06 1.2E-10 69.2 23.8 256 13-299 7-270 (282)
298 KOG1832 HIV-1 Vpr-binding prot 98.9 4.5E-09 9.8E-14 99.2 6.7 260 43-360 1095-1373(1516)
299 PF13360 PQQ_2: PQQ-like domai 98.8 4E-06 8.7E-11 72.1 24.5 183 173-377 35-232 (238)
300 PF08450 SGL: SMP-30/Gluconola 98.8 2.5E-05 5.3E-10 67.5 29.2 208 125-360 14-239 (246)
301 PF00400 WD40: WD domain, G-be 98.8 2E-08 4.4E-13 58.9 6.4 39 290-329 1-39 (39)
302 KOG2695 WD40 repeat protein [G 98.8 2.1E-08 4.5E-13 84.9 8.3 132 161-298 251-386 (425)
303 KOG2314 Translation initiation 98.8 4.8E-06 1E-10 75.3 22.8 267 62-375 219-525 (698)
304 KOG0309 Conserved WD40 repeat- 98.8 8E-08 1.7E-12 89.3 11.9 206 161-379 23-236 (1081)
305 PF08450 SGL: SMP-30/Gluconola 98.8 3E-05 6.5E-10 67.0 27.5 212 64-318 11-242 (246)
306 PF07433 DUF1513: Protein of u 98.8 8.6E-06 1.9E-10 70.0 23.2 204 164-378 6-250 (305)
307 KOG1275 PAB-dependent poly(A) 98.7 3.9E-07 8.4E-12 86.8 14.7 186 173-376 146-343 (1118)
308 PRK02888 nitrous-oxide reducta 98.7 3.4E-05 7.4E-10 72.7 26.6 93 237-332 296-405 (635)
309 KOG3914 WD repeat protein WDR4 98.7 3.6E-07 7.8E-12 79.1 12.1 150 224-378 71-226 (390)
310 PF00400 WD40: WD domain, G-be 98.7 7.7E-08 1.7E-12 56.3 5.8 37 250-286 3-39 (39)
311 KOG0882 Cyclophilin-related pe 98.7 2E-06 4.3E-11 75.7 16.6 253 15-297 21-314 (558)
312 KOG0882 Cyclophilin-related pe 98.7 1.1E-07 2.3E-12 83.4 8.8 198 124-338 21-238 (558)
313 KOG1275 PAB-dependent poly(A) 98.7 1E-06 2.2E-11 84.1 15.3 179 124-329 148-340 (1118)
314 KOG1645 RING-finger-containing 98.6 8.3E-07 1.8E-11 76.9 13.5 85 160-255 191-276 (463)
315 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.6 0.00026 5.7E-09 67.8 31.6 320 14-360 69-517 (527)
316 KOG4649 PQQ (pyrrolo-quinoline 98.6 7.1E-05 1.5E-09 61.6 23.3 264 17-333 66-353 (354)
317 PF06433 Me-amine-dh_H: Methyl 98.6 0.00021 4.6E-09 62.4 27.8 274 24-344 17-333 (342)
318 KOG2114 Vacuolar assembly/sort 98.6 1.7E-05 3.8E-10 75.6 22.3 208 62-299 32-255 (933)
319 KOG2066 Vacuolar assembly/sort 98.6 2.4E-06 5.1E-11 80.6 16.2 183 164-375 41-233 (846)
320 cd00216 PQQ_DH Dehydrogenases 98.6 0.00018 3.9E-09 68.7 28.8 282 66-378 62-427 (488)
321 PF07433 DUF1513: Protein of u 98.5 0.00011 2.3E-09 63.4 22.9 183 168-370 56-280 (305)
322 PRK04043 tolB translocation pr 98.5 0.00038 8.3E-09 64.7 28.5 152 162-332 232-401 (419)
323 KOG2066 Vacuolar assembly/sort 98.5 1.2E-05 2.7E-10 76.0 18.3 173 124-332 50-234 (846)
324 PF06977 SdiA-regulated: SdiA- 98.5 0.00017 3.6E-09 61.3 23.3 198 163-372 22-247 (248)
325 KOG1832 HIV-1 Vpr-binding prot 98.5 1.2E-07 2.6E-12 89.9 4.6 209 103-360 1101-1315(1516)
326 KOG1920 IkappaB kinase complex 98.5 1.9E-05 4.2E-10 78.1 18.7 199 163-376 69-323 (1265)
327 KOG2114 Vacuolar assembly/sort 98.4 0.00012 2.6E-09 70.1 21.0 200 122-338 34-250 (933)
328 PF08596 Lgl_C: Lethal giant l 98.3 0.00037 7.9E-09 63.8 23.0 220 153-376 78-339 (395)
329 PRK02888 nitrous-oxide reducta 98.3 0.00016 3.4E-09 68.4 20.7 194 173-376 140-405 (635)
330 PF11768 DUF3312: Protein of u 98.3 0.0017 3.6E-08 60.2 26.2 73 213-290 259-331 (545)
331 KOG1920 IkappaB kinase complex 98.3 0.00049 1.1E-08 68.6 23.7 246 49-334 66-325 (1265)
332 PF11768 DUF3312: Protein of u 98.3 4.9E-05 1.1E-09 69.9 15.3 74 256-332 257-330 (545)
333 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00088 1.9E-08 55.4 19.6 142 173-329 22-163 (354)
334 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00025 5.4E-09 51.0 14.5 90 66-187 16-109 (111)
335 PF03178 CPSF_A: CPSF A subuni 98.2 0.0034 7.4E-08 56.6 25.9 228 75-328 2-262 (321)
336 KOG3617 WD40 and TPR repeat-co 98.2 0.00025 5.4E-09 67.9 18.0 279 62-373 24-382 (1416)
337 KOG1645 RING-finger-containing 98.1 0.00047 1E-08 60.4 16.5 236 54-331 196-461 (463)
338 KOG3621 WD40 repeat-containing 98.0 7.6E-05 1.7E-09 69.9 12.3 198 163-376 34-245 (726)
339 KOG3617 WD40 and TPR repeat-co 98.0 0.00018 3.9E-09 68.9 14.5 108 167-288 20-131 (1416)
340 PF08553 VID27: VID27 cytoplas 98.0 0.00025 5.4E-09 69.6 15.9 204 174-388 493-737 (794)
341 PF03178 CPSF_A: CPSF A subuni 97.9 0.0075 1.6E-07 54.4 23.1 183 174-372 42-262 (321)
342 KOG3621 WD40 repeat-containing 97.9 6.5E-05 1.4E-09 70.3 9.6 117 214-332 34-155 (726)
343 COG3391 Uncharacterized conser 97.9 0.0072 1.6E-07 55.8 22.9 194 165-376 76-284 (381)
344 KOG4640 Anaphase-promoting com 97.9 6.2E-05 1.3E-09 69.6 9.1 94 214-311 21-115 (665)
345 PF00780 CNH: CNH domain; Int 97.9 0.014 3E-07 51.3 26.8 232 64-340 6-264 (275)
346 COG0823 TolB Periplasmic compo 97.9 0.00092 2E-08 61.9 16.3 178 163-360 193-383 (425)
347 KOG1008 Uncharacterized conser 97.8 5E-06 1.1E-10 76.6 1.0 188 124-331 71-275 (783)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.032 7E-07 53.7 30.2 205 66-293 70-338 (527)
349 KOG4640 Anaphase-promoting com 97.8 0.00011 2.4E-09 68.0 9.4 93 259-355 21-114 (665)
350 COG3490 Uncharacterized protei 97.8 0.0058 1.3E-07 51.5 17.8 106 163-277 68-180 (366)
351 PF04841 Vps16_N: Vps16, N-ter 97.8 0.032 6.9E-07 52.0 27.0 208 76-313 62-271 (410)
352 PF04053 Coatomer_WDAD: Coatom 97.8 0.009 2E-07 55.7 20.8 141 163-331 33-173 (443)
353 PF06433 Me-amine-dh_H: Methyl 97.8 0.025 5.5E-07 49.8 27.5 194 167-378 99-323 (342)
354 PF04053 Coatomer_WDAD: Coatom 97.7 0.04 8.6E-07 51.5 25.8 217 54-331 35-262 (443)
355 KOG1897 Damage-specific DNA bi 97.7 0.062 1.4E-06 53.3 30.4 332 2-376 583-943 (1096)
356 smart00320 WD40 WD40 repeats. 97.7 0.00018 3.9E-09 41.1 6.0 39 290-329 2-40 (40)
357 PF04841 Vps16_N: Vps16, N-ter 97.7 0.045 9.7E-07 51.0 24.6 183 163-360 81-273 (410)
358 KOG1008 Uncharacterized conser 97.7 1.8E-05 3.9E-10 73.0 1.9 246 51-330 58-334 (783)
359 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.036 7.7E-07 50.7 23.4 140 214-360 184-341 (353)
360 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0071 1.5E-07 43.6 14.3 100 165-283 2-109 (111)
361 COG3391 Uncharacterized conser 97.6 0.055 1.2E-06 50.0 24.8 211 125-360 88-312 (381)
362 PF08596 Lgl_C: Lethal giant l 97.6 0.02 4.2E-07 52.7 20.5 212 164-383 3-298 (395)
363 PF14583 Pectate_lyase22: Olig 97.5 0.059 1.3E-06 48.5 26.4 177 185-375 169-381 (386)
364 KOG2444 WD40 repeat protein [G 97.5 0.00015 3.2E-09 58.8 5.1 105 226-331 69-177 (238)
365 KOG2395 Protein involved in va 97.5 0.0028 6.1E-08 57.9 13.2 142 173-330 344-499 (644)
366 PF06977 SdiA-regulated: SdiA- 97.5 0.05 1.1E-06 46.4 21.8 201 104-328 22-247 (248)
367 PF08553 VID27: VID27 cytoplas 97.5 0.0037 8.1E-08 61.6 14.7 144 225-375 491-647 (794)
368 TIGR03074 PQQ_membr_DH membran 97.5 0.13 2.8E-06 51.6 25.5 247 65-340 194-486 (764)
369 smart00320 WD40 WD40 repeats. 97.5 0.00039 8.4E-09 39.6 5.0 37 250-286 4-40 (40)
370 COG0823 TolB Periplasmic compo 97.4 0.013 2.9E-07 54.3 16.4 149 216-374 195-357 (425)
371 PRK13616 lipoprotein LpqB; Pro 97.3 0.012 2.7E-07 57.0 16.3 149 215-374 351-524 (591)
372 KOG2079 Vacuolar assembly/sort 97.3 0.001 2.3E-08 65.6 8.8 101 226-329 98-201 (1206)
373 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.13 2.8E-06 47.3 27.3 83 259-341 308-408 (415)
374 PF05096 Glu_cyclase_2: Glutam 97.3 0.086 1.9E-06 44.9 24.2 187 161-363 43-249 (264)
375 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.14 3E-06 46.9 25.0 149 164-320 185-346 (353)
376 COG3204 Uncharacterized protei 97.2 0.12 2.5E-06 44.3 19.0 200 163-373 86-310 (316)
377 KOG2079 Vacuolar assembly/sort 97.2 0.0015 3.2E-08 64.6 8.3 101 268-368 97-198 (1206)
378 COG3386 Gluconolactonase [Carb 97.2 0.15 3.3E-06 45.1 22.4 206 126-356 40-264 (307)
379 TIGR03074 PQQ_membr_DH membran 97.2 0.33 7.1E-06 48.8 33.4 65 183-248 413-480 (764)
380 KOG2444 WD40 repeat protein [G 97.1 0.00079 1.7E-08 54.7 5.0 142 230-377 33-179 (238)
381 PF05694 SBP56: 56kDa selenium 97.1 0.24 5.1E-06 45.3 20.5 212 15-253 88-350 (461)
382 PRK13616 lipoprotein LpqB; Pro 97.0 0.066 1.4E-06 52.1 17.7 147 164-330 351-524 (591)
383 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0036 7.7E-08 37.6 5.2 35 301-336 11-45 (47)
384 COG3386 Gluconolactonase [Carb 96.9 0.28 6E-06 43.5 23.6 216 60-317 31-271 (307)
385 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0043 9.3E-08 37.3 5.0 36 162-198 11-46 (47)
386 KOG2395 Protein involved in va 96.8 0.03 6.5E-07 51.5 12.2 145 226-376 344-501 (644)
387 COG3490 Uncharacterized protei 96.7 0.12 2.7E-06 43.9 14.0 132 229-362 82-241 (366)
388 KOG3630 Nuclear pore complex, 96.7 0.025 5.3E-07 56.8 11.5 158 158-318 96-260 (1405)
389 PF02897 Peptidase_S9_N: Proly 96.6 0.61 1.3E-05 43.8 24.0 196 166-375 127-357 (414)
390 PF00780 CNH: CNH domain; Int 96.6 0.42 9.1E-06 41.9 27.8 254 9-299 2-266 (275)
391 KOG4441 Proteins containing BT 96.6 0.47 1E-05 46.3 20.2 147 173-335 380-550 (571)
392 PF12234 Rav1p_C: RAVE protein 96.6 0.11 2.3E-06 50.4 15.3 116 260-376 31-157 (631)
393 PF14583 Pectate_lyase22: Olig 96.4 0.71 1.5E-05 41.8 25.0 218 124-364 49-300 (386)
394 PHA02713 hypothetical protein; 96.4 0.21 4.6E-06 48.7 16.4 157 173-347 351-547 (557)
395 KOG4499 Ca2+-binding protein R 96.3 0.31 6.8E-06 40.3 14.0 96 125-233 172-272 (310)
396 PHA02713 hypothetical protein; 96.3 0.25 5.5E-06 48.2 16.4 184 173-375 303-533 (557)
397 PF02897 Peptidase_S9_N: Proly 96.1 1.3 2.8E-05 41.6 30.7 244 56-337 128-410 (414)
398 PF10647 Gmad1: Lipoprotein Lp 96.0 0.91 2E-05 39.3 16.9 145 164-323 25-187 (253)
399 PF14870 PSII_BNR: Photosynthe 95.9 1.1 2.4E-05 39.6 20.0 152 214-372 145-301 (302)
400 COG3204 Uncharacterized protei 95.8 1.1 2.3E-05 38.7 18.2 174 54-246 88-264 (316)
401 PF14727 PHTB1_N: PTHB1 N-term 95.7 1.7 3.8E-05 40.3 27.7 155 15-192 38-204 (418)
402 KOG1916 Nuclear protein, conta 95.7 0.0032 6.9E-08 61.2 0.3 167 163-336 133-328 (1283)
403 PF12234 Rav1p_C: RAVE protein 95.6 0.94 2E-05 44.1 16.5 113 166-288 33-156 (631)
404 KOG4441 Proteins containing BT 95.6 2.6 5.5E-05 41.3 21.1 190 65-290 333-548 (571)
405 TIGR03118 PEPCTERM_chp_1 conse 95.5 1.5 3.3E-05 38.1 22.3 207 164-376 24-280 (336)
406 PF15390 DUF4613: Domain of un 95.5 1.4 3E-05 41.9 16.1 116 214-331 57-186 (671)
407 TIGR02604 Piru_Ver_Nterm putat 95.4 1 2.2E-05 41.5 15.6 141 215-363 15-200 (367)
408 KOG1898 Splicing factor 3b, su 95.4 2.2 4.7E-05 43.4 18.0 183 186-378 855-1051(1205)
409 PHA03098 kelch-like protein; P 95.2 1.6 3.5E-05 42.6 17.4 185 173-376 294-512 (534)
410 PF10647 Gmad1: Lipoprotein Lp 95.2 1.9 4.1E-05 37.3 19.6 151 215-371 25-192 (253)
411 PF15390 DUF4613: Domain of un 95.1 3.1 6.7E-05 39.6 18.1 120 163-288 57-186 (671)
412 PF08728 CRT10: CRT10; InterP 95.1 2.3 4.9E-05 42.1 17.3 115 215-330 102-245 (717)
413 PF05694 SBP56: 56kDa selenium 95.0 2.9 6.2E-05 38.6 22.6 223 125-360 90-387 (461)
414 TIGR02604 Piru_Ver_Nterm putat 95.0 1.9 4E-05 39.8 16.0 145 163-322 14-204 (367)
415 PF07995 GSDH: Glucose / Sorbo 94.8 2.9 6.4E-05 37.8 26.1 75 251-326 246-330 (331)
416 PF10168 Nup88: Nuclear pore c 94.8 0.62 1.3E-05 46.5 12.9 74 259-333 85-181 (717)
417 PF03022 MRJP: Major royal jel 94.5 3.1 6.7E-05 36.7 18.5 170 185-360 35-249 (287)
418 PRK13684 Ycf48-like protein; P 94.5 3.6 7.7E-05 37.3 21.0 156 214-376 173-332 (334)
419 PF10313 DUF2415: Uncharacteri 94.5 0.18 3.9E-06 29.4 5.1 31 302-332 1-34 (43)
420 PF10313 DUF2415: Uncharacteri 94.5 0.16 3.4E-06 29.6 4.8 31 259-289 1-34 (43)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 94.5 4.1 8.8E-05 37.8 21.5 80 216-298 310-408 (415)
422 KOG1897 Damage-specific DNA bi 94.4 6.4 0.00014 39.9 29.7 328 12-377 497-858 (1096)
423 KOG4499 Ca2+-binding protein R 94.4 2.6 5.7E-05 35.1 18.5 93 216-311 160-263 (310)
424 PF14727 PHTB1_N: PTHB1 N-term 94.3 4.4 9.6E-05 37.7 36.3 279 64-376 36-361 (418)
425 KOG2377 Uncharacterized conser 94.3 1.5 3.2E-05 40.2 12.8 137 125-277 35-172 (657)
426 COG4257 Vgb Streptogramin lyas 94.3 3.1 6.7E-05 35.6 18.0 209 151-376 50-263 (353)
427 KOG3630 Nuclear pore complex, 94.3 0.85 1.9E-05 46.5 12.3 134 224-360 109-257 (1405)
428 COG5167 VID27 Protein involved 94.2 1.6 3.4E-05 40.7 12.9 143 173-331 478-632 (776)
429 COG5276 Uncharacterized conser 94.1 3.5 7.7E-05 35.6 20.7 145 214-368 87-235 (370)
430 PF10395 Utp8: Utp8 family; I 94.0 6.8 0.00015 38.5 27.7 259 60-338 34-312 (670)
431 PF14781 BBS2_N: Ciliary BBSom 93.9 2.1 4.6E-05 32.3 13.1 109 125-246 12-126 (136)
432 PF08728 CRT10: CRT10; InterP 93.6 1 2.2E-05 44.4 11.3 124 164-287 102-245 (717)
433 COG3823 Glutamine cyclotransfe 93.6 3.5 7.6E-05 33.7 12.9 175 173-363 55-247 (262)
434 PF05096 Glu_cyclase_2: Glutam 93.2 4.9 0.00011 34.5 19.1 152 214-374 45-202 (264)
435 PF07569 Hira: TUP1-like enhan 93.2 0.81 1.8E-05 38.5 9.0 63 225-288 20-95 (219)
436 PF07569 Hira: TUP1-like enhan 93.2 0.79 1.7E-05 38.5 8.9 69 267-336 19-100 (219)
437 PF02333 Phytase: Phytase; In 93.1 6.9 0.00015 35.8 24.6 216 15-254 69-299 (381)
438 PLN00033 photosystem II stabil 92.8 8.2 0.00018 35.9 16.7 143 224-372 247-396 (398)
439 PF14870 PSII_BNR: Photosynthe 92.8 6.6 0.00014 34.8 26.3 115 255-371 141-257 (302)
440 KOG4460 Nuclear pore complex, 92.7 1.5 3.3E-05 40.9 10.4 78 260-337 105-204 (741)
441 PF10168 Nup88: Nuclear pore c 92.5 8.8 0.00019 38.7 16.3 90 164-255 86-189 (717)
442 PRK10115 protease 2; Provision 92.5 13 0.00028 37.5 23.0 194 165-374 129-343 (686)
443 PHA02790 Kelch-like protein; P 92.5 11 0.00023 36.4 17.8 145 173-336 271-428 (480)
444 KOG1916 Nuclear protein, conta 92.5 0.28 6.1E-06 48.5 5.8 192 131-330 151-373 (1283)
445 KOG2280 Vacuolar assembly/sort 92.4 5.7 0.00012 39.0 14.1 55 258-312 216-270 (829)
446 KOG1900 Nuclear pore complex, 92.2 7.8 0.00017 40.7 15.5 164 71-246 95-273 (1311)
447 PF07995 GSDH: Glucose / Sorbo 92.1 5.5 0.00012 36.1 13.5 106 260-368 3-136 (331)
448 KOG4659 Uncharacterized conser 91.9 19 0.00042 38.1 27.5 74 5-86 348-430 (1899)
449 PF13449 Phytase-like: Esteras 91.4 11 0.00023 34.2 16.5 160 214-376 20-250 (326)
450 PHA03098 kelch-like protein; P 91.2 6.3 0.00014 38.5 13.8 146 173-334 342-514 (534)
451 PF02333 Phytase: Phytase; In 91.0 12 0.00027 34.2 20.7 193 171-377 65-292 (381)
452 PRK13684 Ycf48-like protein; P 90.9 12 0.00027 33.9 16.6 151 162-329 172-329 (334)
453 TIGR02276 beta_rpt_yvtn 40-res 90.5 1.7 3.7E-05 25.0 5.9 40 268-309 1-41 (42)
454 PF11635 Med16: Mediator compl 90.3 23 0.00051 36.2 21.8 221 15-240 63-345 (753)
455 TIGR03032 conserved hypothetic 90.1 13 0.00028 32.9 24.6 91 264-360 208-318 (335)
456 PF11715 Nup160: Nucleoporin N 89.8 2.3 5E-05 41.7 9.5 39 302-340 215-257 (547)
457 PLN00033 photosystem II stabil 89.7 17 0.00037 33.8 18.1 147 165-328 241-396 (398)
458 KOG2247 WD40 repeat-containing 89.7 0.053 1.1E-06 49.6 -1.7 136 166-316 38-174 (615)
459 PHA02790 Kelch-like protein; P 89.7 16 0.00035 35.1 14.8 142 173-333 318-472 (480)
460 PF11635 Med16: Mediator compl 89.6 27 0.00058 35.8 17.8 68 259-326 260-345 (753)
461 PF11715 Nup160: Nucleoporin N 89.5 2.1 4.5E-05 42.0 9.0 72 225-296 156-256 (547)
462 TIGR02276 beta_rpt_yvtn 40-res 89.3 2.3 5E-05 24.4 5.8 31 311-341 1-32 (42)
463 COG1520 FOG: WD40-like repeat 89.2 18 0.00039 33.4 22.1 195 123-341 68-278 (370)
464 TIGR03606 non_repeat_PQQ dehyd 89.0 19 0.00041 34.0 14.2 55 259-313 30-90 (454)
465 KOG2377 Uncharacterized conser 88.9 9 0.0002 35.4 11.4 100 212-316 65-168 (657)
466 COG5167 VID27 Protein involved 88.6 11 0.00024 35.4 12.0 145 224-376 476-633 (776)
467 PF14781 BBS2_N: Ciliary BBSom 88.0 9.8 0.00021 28.8 13.0 111 224-338 7-132 (136)
468 KOG1900 Nuclear pore complex, 87.8 16 0.00035 38.5 13.7 140 181-332 96-273 (1311)
469 COG1520 FOG: WD40-like repeat 86.8 26 0.00055 32.4 19.4 151 175-338 69-224 (370)
470 PF07250 Glyoxal_oxid_N: Glyox 86.8 19 0.00041 30.8 12.8 126 165-299 69-208 (243)
471 smart00564 PQQ beta-propeller 86.1 2.3 4.9E-05 22.9 4.2 26 175-200 7-32 (33)
472 PF05935 Arylsulfotrans: Aryls 86.0 34 0.00073 32.9 14.6 106 264-375 153-301 (477)
473 COG3292 Predicted periplasmic 86.0 34 0.00073 32.9 17.3 113 258-375 375-491 (671)
474 PF14761 HPS3_N: Hermansky-Pud 86.0 19 0.0004 29.9 14.4 103 175-290 29-165 (215)
475 PF01011 PQQ: PQQ enzyme repea 85.9 2.6 5.6E-05 23.9 4.4 28 176-203 2-29 (38)
476 KOG3616 Selective LIM binding 85.7 2 4.3E-05 41.9 5.9 109 259-372 15-123 (1636)
477 KOG1983 Tomosyn and related SN 85.6 29 0.00062 36.7 14.6 73 256-335 196-268 (993)
478 COG4590 ABC-type uncharacteriz 85.5 7.8 0.00017 35.8 9.1 162 163-335 221-390 (733)
479 COG5276 Uncharacterized conser 85.2 25 0.00054 30.7 24.0 269 16-330 98-368 (370)
480 PF10433 MMS1_N: Mono-function 84.8 40 0.00086 32.7 26.2 262 14-311 222-503 (504)
481 TIGR03606 non_repeat_PQQ dehyd 84.5 33 0.00071 32.5 13.1 107 214-322 30-166 (454)
482 COG5308 NUP170 Nuclear pore co 83.8 49 0.0011 33.8 14.1 106 71-191 98-208 (1263)
483 PF14269 Arylsulfotran_2: Aryl 83.5 32 0.00069 30.6 14.3 74 165-244 146-219 (299)
484 COG4590 ABC-type uncharacteriz 83.1 10 0.00022 35.0 8.8 157 214-378 221-389 (733)
485 KOG2247 WD40 repeat-containing 81.5 0.091 2E-06 48.1 -4.4 140 224-371 43-184 (615)
486 PF07676 PD40: WD40-like Beta 81.4 7.5 0.00016 21.9 5.5 28 301-328 8-38 (39)
487 PF07676 PD40: WD40-like Beta 80.8 7.9 0.00017 21.8 5.5 29 257-285 7-38 (39)
488 PF12768 Rax2: Cortical protei 80.7 20 0.00044 31.4 9.8 56 279-335 15-76 (281)
489 smart00564 PQQ beta-propeller 80.3 3.9 8.5E-05 21.9 3.6 25 67-91 8-32 (33)
490 TIGR03118 PEPCTERM_chp_1 conse 80.0 42 0.00091 29.6 22.0 242 62-311 31-307 (336)
491 TIGR03548 mutarot_permut cycli 79.1 48 0.001 29.8 18.3 107 226-335 72-198 (323)
492 KOG4460 Nuclear pore complex, 78.6 42 0.0009 32.0 11.2 76 216-293 106-203 (741)
493 KOG2063 Vacuolar assembly/sort 78.5 87 0.0019 32.4 15.0 65 268-339 210-276 (877)
494 COG3823 Glutamine cyclotransfe 78.2 38 0.00082 28.1 12.3 124 180-319 107-247 (262)
495 PF12657 TFIIIC_delta: Transcr 78.2 33 0.00072 27.6 9.8 31 259-289 86-122 (173)
496 PF13570 PQQ_3: PQQ-like domai 76.9 11 0.00024 21.4 4.9 21 226-246 20-40 (40)
497 PF12657 TFIIIC_delta: Transcr 76.8 26 0.00055 28.2 8.8 32 301-332 85-122 (173)
498 PF03088 Str_synth: Strictosid 76.6 15 0.00032 25.7 6.2 43 276-320 33-75 (89)
499 COG3292 Predicted periplasmic 76.2 78 0.0017 30.6 18.0 133 184-331 354-491 (671)
500 PF01011 PQQ: PQQ enzyme repea 75.9 8.8 0.00019 21.6 4.2 27 67-93 2-28 (38)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-50 Score=337.87 Aligned_cols=316 Identities=18% Similarity=0.260 Sum_probs=273.3
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee-eeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~ 93 (430)
.+|+||+.|.++|+||+.+. ....+..+|..- +++++| +|||+.||+|+.||+|++||..+|+++. .+.+
T Consensus 128 ~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~W--Vlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g 198 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNW--VLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG 198 (480)
T ss_pred ceEEecCCCceEEeeccCCC-----CcceeecCCccE--EEEEEE--CCCcchhhccccCCeEEEecCCCCCcccccccC
Confidence 58999999999999999985 667788888887 566666 8899999999999999999999988664 4444
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
|...|.+++|-+.+... ....+++++.||.++||++.... .++. -..|...|+|+.|--
T Consensus 199 --------H~K~It~Lawep~hl~p---~~r~las~skDg~vrIWd~~~~~--------~~~~-lsgHT~~VTCvrwGG- 257 (480)
T KOG0271|consen 199 --------HKKWITALAWEPLHLVP---PCRRLASSSKDGSVRIWDTKLGT--------CVRT-LSGHTASVTCVRWGG- 257 (480)
T ss_pred --------cccceeEEeecccccCC---CccceecccCCCCEEEEEccCce--------EEEE-eccCccceEEEEEcC-
Confidence 44899999997765422 44589999999999999986432 2333 336889999999984
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee---------CCCC-----------------
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---------IDDH----------------- 227 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~----------------- 227 (430)
..+|++|+.|++|++|+...|.+...+++|. .+|+.++... .|.+
T Consensus 258 ~gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 258 EGLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred CceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 4599999999999999999999999999886 6676666520 1222
Q ss_pred --------CEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc
Q 014114 228 --------RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 228 --------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
..+++|+.|.++.+|+....++++..+.+|..-|..+.||||+++||+++.|..|++||.++|+.+.+|++|
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence 359999999999999998878889999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEec
Q 014114 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~ 373 (430)
-+.|+.++|+.|.++|++|+.|.++++||+++.+.... +++|.+. |+++.|+|||.. ++++.|..+++|.
T Consensus 409 -v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D--LpGh~DE-Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 -VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD--LPGHADE-VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc--CCCCCce-EEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999998888 8899666 599999999999 8999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.5e-45 Score=307.25 Aligned_cols=279 Identities=16% Similarity=0.194 Sum_probs=250.3
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+....| ++|++.|++|+.+|.++||+..+...+..+.+|. ..+.++.|.+... +..+++++.||
T Consensus 178 is~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~--------~~v~~~~fhP~~~------~~~lat~s~Dg 241 (459)
T KOG0272|consen 178 ISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT--------SRVGAAVFHPVDS------DLNLATASADG 241 (459)
T ss_pred ceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEEEeccc--------cceeeEEEccCCC------ccceeeeccCC
Confidence 445555 6688899999999999999999999999999876 6788888887631 24899999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
++++|.++... .+.-+. .|...|..++|+|+|++|++++.|.+-++||+.++..+...++|.
T Consensus 242 tvklw~~~~e~--------~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--------- 303 (459)
T KOG0272|consen 242 TVKLWKLSQET--------PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS--------- 303 (459)
T ss_pred ceeeeccCCCc--------chhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---------
Confidence 99999987643 222222 567889999999999999999999999999999999888888876
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
..|.+++| .+||.++++|+.|..-+|||++++.+ +..+.+|..+|.+|+|+|+|..||+|+.|++++|||++..+.+
T Consensus 304 ~~v~~iaf--~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 304 KGVFSIAF--QPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred cccceeEe--cCCCceeeccCccchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 66999999 89999999999999999999999886 8899999999999999999999999999999999999999999
Q ss_pred eEEeccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEE
Q 014114 294 GCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI 371 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~v 371 (430)
+++.+| ..-|+.|.|+| .|.+|+|++.|++++||...+..++.. +.||.+ .|.++.+++|+++ ++++.|.++++
T Consensus 381 y~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks--LaGHe~-kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 381 YTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS--LAGHEG-KVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred eecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchh--hcCCcc-ceEEEEeccCCceEEEeccCceeee
Confidence 999998 99999999999 788999999999999999999999999 889954 4699999999999 99999999999
Q ss_pred ec
Q 014114 372 QN 373 (430)
Q Consensus 372 w~ 373 (430)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-43 Score=295.26 Aligned_cols=292 Identities=11% Similarity=0.134 Sum_probs=253.6
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.....+.+|.++ +++..| +|+|..|++|+.|.++++||+.+..++.+.++|. ..|.|+.|.+...
T Consensus 106 rCssS~~GH~e~--Vl~~~f--sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--------~WVlcvawsPDgk--- 170 (480)
T KOG0271|consen 106 RCSSSIAGHGEA--VLSVQF--SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--------NWVLCVAWSPDGK--- 170 (480)
T ss_pred eeccccCCCCCc--EEEEEe--cCCCceEEecCCCceEEeeccCCCCcceeecCCc--------cEEEEEEECCCcc---
Confidence 344567778888 566666 7789999999999999999999999999999866 7899999988555
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-----CCCEEEEecCCCeEEEEECCCC
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~~ 194 (430)
.+++|+.+|.|.+|+...... ..+.+. .|...|.+++|.| ...+|++++.||.|+|||+..+
T Consensus 171 -----~iASG~~dg~I~lwdpktg~~-------~g~~l~-gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 171 -----KIASGSKDGSIRLWDPKTGQQ-------IGRALR-GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred -----hhhccccCCeEEEecCCCCCc-------cccccc-CcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 999999999999999765442 122222 6788999999976 6679999999999999999999
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEee-------
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE------- 267 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s------- 267 (430)
.++..+.+|. ..|+|+.| ....+|++|+.|++|++|+...+. ....+++|...|+.++.+
T Consensus 238 ~~~~~lsgHT---------~~VTCvrw---GG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 238 TCVRTLSGHT---------ASVTCVRW---GGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred eEEEEeccCc---------cceEEEEE---cCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhc
Confidence 9999999987 77999999 345699999999999999999866 488999999999999876
Q ss_pred ----CCC-------------------------CEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 268 ----PDS-------------------------FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 268 ----~~~-------------------------~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
|.+ +.|++|+.|.++.+|+.... +++..+.+| ..-|+.+.||||++++|
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIA 383 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEE
Confidence 223 35999999999999997654 578888998 99999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+++.|..|++||-++|+.+.. +++|... |+.++|+.|.++ ++++.|.+|++|+...
T Consensus 384 SaSFDkSVkLW~g~tGk~las--fRGHv~~-VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLAS--FRGHVAA-VYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EeecccceeeeeCCCcchhhh--hhhccce-eEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 999999999999999999999 8899766 599999999999 9999999999999875
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-42 Score=289.31 Aligned_cols=270 Identities=16% Similarity=0.157 Sum_probs=244.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+-+|.++||+.... ..+.+|.+|...+..+.|.+.. ++.-||+++.||++++|++.+..++..+.+|
T Consensus 188 ~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH 260 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLEGH 260 (459)
T ss_pred CeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhhcc
Confidence 67999999999999999986 7889999999997666666532 3567999999999999999888888888876
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..|..++|.+... +|.+++.|.+-++||+..... -+..-.|...|.+++|+|+|
T Consensus 261 ~--------~RVs~VafHPsG~--------~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 261 L--------ARVSRVAFHPSGK--------FLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred h--------hhheeeeecCCCc--------eeeecccccchhhcccccchh---------hHhhcccccccceeEecCCC
Confidence 5 6888888887555 999999999999999987543 23455788999999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
.++++|+.|..-+|||++++.++..+.+|. ..|.+++| +|+|..||+|+.|++++|||++... .+..+
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~f--sPNGy~lATgs~Dnt~kVWDLR~r~-~ly~i 383 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAF--SPNGYHLATGSSDNTCKVWDLRMRS-ELYTI 383 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccc---------cceeeEeE--CCCceEEeecCCCCcEEEeeecccc-cceec
Confidence 999999999999999999999999999986 67999999 9999999999999999999999744 58999
Q ss_pred eecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 255 DFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 255 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
.+|..-|+.|.|+| .|.+|++++.|++++||...++.+++.+.+| .+.|.++..++++.++++++.|+++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999998 7789999999999999999999999999999 99999999999999999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-39 Score=260.05 Aligned_cols=296 Identities=12% Similarity=0.182 Sum_probs=242.4
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-----CceeeeeeecCCCCCCCCCCceEEEEeecc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
.+..++.+|++.+..++.... +-+.|+++++|..|.+|++.. |..+..+.+|+ ..|..+.+..
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs--------H~v~dv~~s~- 73 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS--------HFVSDVVLSS- 73 (315)
T ss_pred eeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeeeccc--------eEecceEEcc-
Confidence 445678899999888888774 236899999999999999864 55566676654 4566666655
Q ss_pred CccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 014114 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 194 (430)
++++.++++.|+.+++||++... +.+.+. .|...|.+++|+++...+++|+.|.+|++|+....
T Consensus 74 -------dg~~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 74 -------DGNFALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred -------CCceEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 45599999999999999998643 334444 68899999999999999999999999999998654
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEE
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 274 (430)
.. +++..... .+||.|+.|.|+++..+|++++.|++|++||+++.+ ....+.+|+..++.+++||||.+++
T Consensus 138 ck-~t~~~~~~-------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 138 CK-YTIHEDSH-------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred EE-EEEecCCC-------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEe
Confidence 44 44433321 289999999655558899999999999999999854 5788999999999999999999999
Q ss_pred EEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc------cee
Q 014114 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL------NEV 348 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~------~~~ 348 (430)
+|+.||.+.+||++.++.++.+.+ ...|.+++|+|+..+|+.+. +..|+|||+.++..+..+.++... ...
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcE
Confidence 999999999999999999988876 68999999999987777665 445999999999988876544321 334
Q ss_pred EEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 349 VFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 349 i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+.+++|++||+. +++-.|+.|++|...
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 789999999999 899999999999864
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-39 Score=259.92 Aligned_cols=291 Identities=15% Similarity=0.145 Sum_probs=249.1
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...+++|.+.+ .++.| .+|.++|++++.||.+.|||..+...+..+.... ..|...++.+..
T Consensus 48 rr~LkGH~~Ki--~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--------~WVMtCA~sPSg------ 109 (343)
T KOG0286|consen 48 RRTLKGHLNKI--YAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--------SWVMTCAYSPSG------ 109 (343)
T ss_pred EEEecccccce--eeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecCc--------eeEEEEEECCCC------
Confidence 46788999985 44444 6678899999999999999998888777776632 467777776644
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeE--EeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS--WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
+.++.++-|+...||++.+... ++.+++ --..|.+.+.|..|-+ ...|++++.|.+..+||+++++.+..
T Consensus 110 --~~VAcGGLdN~Csiy~ls~~d~-----~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 110 --NFVACGGLDNKCSIYPLSTRDA-----EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred --CeEEecCcCceeEEEecccccc-----cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEE
Confidence 4899999999999999985421 122222 2346888999999986 66888999999999999999999999
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
+.+|. .-|.++.+ +| +++.|++|+-|+..++||++.+. .++.|.+|+..|.+|.|.|+|.-|++|+.
T Consensus 182 f~GH~---------gDV~slsl--~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 182 FHGHT---------GDVMSLSL--SPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred ecCCc---------ccEEEEec--CCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCC
Confidence 99987 66999999 66 99999999999999999999976 59999999999999999999999999999
Q ss_pred CCCEEEEEccCCeEEeEEecc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC
Q 014114 279 SGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
|++.++||++..+.+..+... ...+|++++||..|++|++|..|..+.+||.-.++.+.. +.+|.+ .|.++..+||
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--L~GHeN-RvScl~~s~D 326 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--LAGHEN-RVSCLGVSPD 326 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE--eeccCC-eeEEEEECCC
Confidence 999999999999888777632 256899999999999999999999999999999998888 778854 4699999999
Q ss_pred cce-eeecCCCcEEEec
Q 014114 358 EVA-NAAADAPMLEIQN 373 (430)
Q Consensus 358 g~~-~~~~~d~~v~vw~ 373 (430)
|.- ++++.|..++||.
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 999 9999999999994
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=249.44 Aligned_cols=296 Identities=14% Similarity=0.146 Sum_probs=246.2
Q ss_pred CCCCCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce-
Q 014114 9 CPGCPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL- 87 (430)
Q Consensus 9 ~~~~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~- 87 (430)
.|..++.-|++++.|.+||+|.+.++ ....+++..+..+..+.+ .|++.+||+|+. ..|++||+.+++.
T Consensus 5 ~~~d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLei----Tpdk~~LAaa~~-qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 5 PPTDDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEI----TPDKKDLAAAGN-QHVRLYDLNSNNPN 74 (311)
T ss_pred CCCCCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEE----cCCcchhhhccC-CeeEEEEccCCCCC
Confidence 45558889999999999999999998 888888877777665555 556777888764 6799999988764
Q ss_pred -eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 88 -RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
+.++.+|. +.|..+.|-.... .++++++||+++||++.... .-+.|+ +..+|.
T Consensus 75 Pv~t~e~h~--------kNVtaVgF~~dgr--------WMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn 128 (311)
T KOG0315|consen 75 PVATFEGHT--------KNVTAVGFQCDGR--------WMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVN 128 (311)
T ss_pred ceeEEeccC--------CceEEEEEeecCe--------EEEecCCCceEEEEeccCcc--------cchhcc--CCCCcc
Confidence 66666654 5788777766444 89999999999999998522 233343 568999
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
++..+|+...|++|..+|.|++||+.+..+...+..... ..|.++.. .|+|.+++.+...|..++|++-.
T Consensus 129 ~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--------~~i~sl~v--~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 129 TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--------TSIQSLTV--MPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--------cceeeEEE--cCCCcEEEEecCCccEEEEEccC
Confidence 999999999999999999999999998877666554331 56888888 79999999999999999999875
Q ss_pred CC-----cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 247 QR-----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 247 ~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
.. .|+..++.|+..+..+.+||++++|++++.|.+++||+..+. +....+.+| ...++..+||.||+||++|+
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecC
Confidence 32 367788999999999999999999999999999999999887 566678888 89999999999999999999
Q ss_pred CCCeEEEEeCCCCceeeEEeeccccceeEEEeee
Q 014114 321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 321 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 354 (430)
.|+.+++||+..++.+.. ..+|.... .+++.
T Consensus 278 sd~~~rlW~~~~~k~v~q--y~gh~K~~-vc~~l 308 (311)
T KOG0315|consen 278 SDHTARLWDLSAGKEVRQ--YQGHHKAA-VCVAL 308 (311)
T ss_pred CCCceeecccccCceeee--cCCccccc-EEEEe
Confidence 999999999999999988 77786665 45443
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-38 Score=261.62 Aligned_cols=291 Identities=17% Similarity=0.254 Sum_probs=251.0
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.+.+.+.+|..+++.+-+ +|+-.++++++.|++|++||..+|++...+++|. +.+..+.+.....
T Consensus 99 ~l~~~l~g~r~~vt~v~~----hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt--------~sv~di~~~a~Gk--- 163 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIF----HPSEALVVSASEDATIKVFDTETGELERSLRGHT--------DSVFDISFDASGK--- 163 (406)
T ss_pred Cchhhhhccccceeeeee----ccCceEEEEecCCceEEEEEccchhhhhhhhccc--------cceeEEEEecCcc---
Confidence 455566667666444443 6777788999999999999999999999999876 5677777766444
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.+++++.|-.+.+|+.+.... .++. ...|...|.+++|-|.+.+|++++.|.+|+.|++.++.++++
T Consensus 164 -----~l~tcSsDl~~~LWd~~~~~~-------c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 164 -----YLATCSSDLSAKLWDFDTFFR-------CIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred -----EEEecCCccchhheeHHHHHH-------HHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 999999999999999865321 2222 235677899999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCC----------
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD---------- 269 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~---------- 269 (430)
+.+|. .||..+.. +.||.++++++.|.+|++|-+.+++ +...++.|+.+|.+++|.|.
T Consensus 231 ~~~h~---------ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 231 FPGHS---------EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred ccCch---------HhEEEEEe--cCCeeEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhcc
Confidence 99986 78999988 8999999999999999999999865 47788999999999999762
Q ss_pred -----CCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccc
Q 014114 270 -----SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 270 -----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 344 (430)
++++.+++.|++|++||+.++.++.++.+| ...|..++|+|.|+||+++..|+++++||++++++... +..|
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~--~~ah 375 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT--LEAH 375 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec--cCCC
Confidence 368999999999999999999999999999 99999999999999999999999999999999999998 4455
Q ss_pred cceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 345 LNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 345 ~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
...++++.|..+-.+ ++|+-|..+++|+.
T Consensus 376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -cceeEEEecCCCCceEEeccccceeeeeec
Confidence 445799999999999 99999999999974
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-36 Score=240.69 Aligned_cols=274 Identities=14% Similarity=0.231 Sum_probs=228.2
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
-+|++++.|.+|++|...+|.+..+++- .+..|..+.+.+... .|+++ ..-.|++||+....+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh--------~dsqVNrLeiTpdk~--------~LAaa-~~qhvRlyD~~S~np 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH--------PDSQVNRLEITPDKK--------DLAAA-GNQHVRLYDLNSNNP 73 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec--------CccceeeEEEcCCcc--------hhhhc-cCCeeEEEEccCCCC
Confidence 4789999999999999999999999865 224677788766443 44444 456799999986543
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.++..|+ .|...|..+.|..+|+.+++|++||+++|||++...+.+.++.. .+|+++.. +|
T Consensus 74 ------~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~----------spVn~vvl--hp 134 (311)
T KOG0315|consen 74 ------NPVATFE-GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----------SPVNTVVL--HP 134 (311)
T ss_pred ------CceeEEe-ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC----------CCcceEEe--cC
Confidence 4677777 56789999999999999999999999999999986665555432 67999999 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC------eEEeEEecc
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGK 299 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~ 299 (430)
+...|++|..+|.|++||+....+....+.....+|.++...|||.+++.+...|..++|++-.. +++.+++.|
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 99999999999999999999865433344445578999999999999999999999999998654 456778888
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
.+.+..+.+||++++|++++.|.+++||++.+. ......+.+| ...+++++||.||.+ ++++.|+.+++|+.....
T Consensus 215 -~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 215 -NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred -cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 999999999999999999999999999999887 3334447777 466899999999999 999999999999987744
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.7e-37 Score=246.89 Aligned_cols=267 Identities=16% Similarity=0.233 Sum_probs=230.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC------cee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG------DLR 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~------~~~ 88 (430)
.++++++.||.+.|||..+. .....+.-.. ..+++.+| +|.|+++|+|+.|....||++.+. +..
T Consensus 68 r~ivSaSqDGklIvWDs~Tt-----nK~haipl~s--~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 68 RRIVSASQDGKLIVWDSFTT-----NKVHAIPLPS--SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred CeEEeeccCCeEEEEEcccc-----cceeEEecCc--eeEEEEEE--CCCCCeEEecCcCceeEEEecccccccccceee
Confidence 57999999999999999874 3344444333 34888888 999999999999999999999754 222
Q ss_pred eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEE
Q 014114 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..+.+ |...+.|..+.+ ++.+++++.|.+..+||++... .+..|. .|.+.|.++
T Consensus 139 r~l~g--------HtgylScC~f~d---------D~~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~sl 192 (343)
T KOG0286|consen 139 RELAG--------HTGYLSCCRFLD---------DNHILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVMSL 192 (343)
T ss_pred eeecC--------ccceeEEEEEcC---------CCceEecCCCceEEEEEcccce--------EEEEec-CCcccEEEE
Confidence 33444 447888888876 2489999999999999998654 455555 788999999
Q ss_pred EEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC
Q 014114 169 KVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 169 ~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 247 (430)
+++| +++.+++|+-|+..++||++.+.+.+.+.+|. .-|+++.| .|+|.-|++|+.|++.++||++..
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~f--fP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRF--FPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccc---------cccceEEE--ccCCCeeeecCCCceeEEEeecCC
Confidence 9999 99999999999999999999999999999987 66999999 689999999999999999999986
Q ss_pred CcceEEeee--cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeE
Q 014114 248 RRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 248 ~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v 325 (430)
++ +..+.. -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+| ...|.++..+|||..+++|+.|.++
T Consensus 262 ~~-~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 262 QE-LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred cE-EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhHhe
Confidence 64 555543 2468999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred EEEe
Q 014114 326 RFWD 329 (430)
Q Consensus 326 ~iwd 329 (430)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-36 Score=260.51 Aligned_cols=337 Identities=16% Similarity=0.179 Sum_probs=261.5
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.|+|++||++|++|.+|+-..= +...+++.|..-+.++.+ +|||.++++++.||.|.|||-.+|+.+..+.
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRy----sPDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRY----SPDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEE----CCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 3699999999999999986642 666777778776555554 6688899999999999999999999999887
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc------------------------cc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------AE 148 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~ 148 (430)
.- .+|.+.|.++.|.+... .+++++.|.+++||++...... +.
T Consensus 230 ~~-----~aHkGsIfalsWsPDs~--------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 230 DS-----DAHKGSIFALSWSPDST--------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred CC-----CCccccEEEEEECCCCc--------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 41 24668999999988655 9999999999999998765431 11
Q ss_pred CCcceeeEEee----------ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-----------eeecCCC---
Q 014114 149 SSCSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-----------WTAKPPP--- 204 (430)
Q Consensus 149 ~~~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~~~~~~--- 204 (430)
+..+.|..++. .|...|+++..+|++.+|++|+.||.|.-|+..++..- ..+....
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 12233333332 24567999999999999999999999999998764211 0000000
Q ss_pred -------------------------------CCCCCccc---------------------------CcceeEeEEeeCCC
Q 014114 205 -------------------------------KNSLGIFT---------------------------PTWFTSAAFLSIDD 226 (430)
Q Consensus 205 -------------------------------~~~~~~~~---------------------------~~~v~~~~~~~~~~ 226 (430)
+....... .-...++++ +|+
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv--~~~ 454 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV--SPD 454 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE--cCC
Confidence 00000000 001345566 799
Q ss_pred CCEEEEEeCCCcEEEEECCCCC-cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE
Q 014114 227 HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 227 ~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
++.+++|+.|+.|++|.+.... ........|.++|++++||||+.+|++|...+.|.+||+.+.+.....-+.|...|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 9999999999999999998754 334566779999999999999999999999999999999988875444443499999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
+++|+|+..++|+|+.|-.|.||++........ ...+|..+ ++.+.|-.+..+++.+.|..|++|+..
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~-iknAH~~g-Vn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII-IKNAHLGG-VNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheE-eccccccC-ceeEEEecCceEEeccCcceeEEeccc
Confidence 999999999999999999999999986554422 25677667 799999999999999999999999864
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-37 Score=255.79 Aligned_cols=294 Identities=14% Similarity=0.252 Sum_probs=254.5
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
++...+.+|.+-+.++++.+ ..+++++|+.|++|+|||+.+|++..++.+|- ..+..+++.+.++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlatg~LkltltGhi--------~~vr~vavS~rHp--- 206 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLATGQLKLTLTGHI--------ETVRGVAVSKRHP--- 206 (460)
T ss_pred eehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEcccCeEEEeecchh--------heeeeeeecccCc---
Confidence 34455678889888887754 56799999999999999999999999998755 4677888888777
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
++++++.|+.++.||++... .|+-|. .|-..|.|++.+|.-..|++|+.|.++++||+++...+..
T Consensus 207 -----YlFs~gedk~VKCwDLe~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 207 -----YLFSAGEDKQVKCWDLEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred -----eEEEecCCCeeEEEechhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEE
Confidence 99999999999999998654 566665 5778899999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
+.+|. ..|..+.+ .|-...+++|+.|++|++||++.++. ...+..|...+++++.+|....|++++.|
T Consensus 273 l~GH~---------~~V~~V~~--~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 273 LSGHT---------NPVASVMC--QPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred ecCCC---------CcceeEEe--ecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCCc
Confidence 99987 67888888 67778899999999999999999775 77888899999999999999999999888
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE---eecccc--ceeEEEeee
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV---FLKQHL--NEVVFDSAF 354 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~--~~~i~~~~~ 354 (430)
. |+-|++..+..+..+.+| ..-|++++.+.|+ ++++|+.+|.+.+||.++|...+.. ..++.. ..-|++.+|
T Consensus 341 n-ik~w~~p~g~f~~nlsgh-~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f 417 (460)
T KOG0285|consen 341 N-IKQWKLPEGEFLQNLSGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF 417 (460)
T ss_pred c-ceeccCCccchhhccccc-cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence 5 899999999999999998 9999999998887 7889999999999999988665543 223322 233799999
Q ss_pred cCCcce-eeecCCCcEEEecCCCC
Q 014114 355 ADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 355 s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
...|.. +++..|.+|++|..++.
T Consensus 418 Dktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 418 DKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccCceEEeccCCcceEEEecccc
Confidence 999998 99999999999987753
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=279.08 Aligned_cols=346 Identities=14% Similarity=0.123 Sum_probs=247.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce-eeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~ 93 (430)
.-|+||+.||.|+|||+..+ .....|.+|++.+..+.|.. ++.-.+|++|..|+++++||+.+... +..+..
T Consensus 118 ~LlAtggaD~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~--~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~ 190 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHP--HWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL 190 (775)
T ss_pred ceEEeccccceEEEEEeeCC-----EEEEEecCCCceEEEEEeCC--ccchhheeecCCCceEEEEEcccCchHHHHHHh
Confidence 56899999999999999987 78899999999966666655 65567899999999999999986544 444444
Q ss_pred cCC----CCCCCC--------CCceE---------------------EEEeeccCccccccCCceEEEEccCCeeEEEEe
Q 014114 94 AGD----SGAQPE--------DDGIV---------------------GLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 94 ~~~----~~~~~~--------~~~i~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~ 140 (430)
|.. ..+.+. .+.+. +..+.+... +-.+.++++++.+|.+++|+.
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~---~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL---GGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc---CCcceEEEEecCCceEEEEec
Confidence 331 111111 11221 001111100 001236666666677777664
Q ss_pred eeeccc------------------------ccCCcceeeEEeec------------------------------------
Q 014114 141 EVTKVS------------------------AESSCSTVKSWNVC------------------------------------ 160 (430)
Q Consensus 141 ~~~~~~------------------------~~~~~~~i~~~~~~------------------------------------ 160 (430)
+..... ....++.+.+++..
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence 332110 00011112222110
Q ss_pred ----------------cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------------------------
Q 014114 161 ----------------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE----------------------------- 195 (430)
Q Consensus 161 ----------------~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----------------------------- 195 (430)
|...|.++....+|-+|++|+.|+++++|.++++.
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 11234444433345566777777777777553210
Q ss_pred ---------eeeeecCC--C-------CCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec
Q 014114 196 ---------KIWTAKPP--P-------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR 257 (430)
Q Consensus 196 ---------~~~~~~~~--~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 257 (430)
.++.+... . .......|...|+++++ +|+.++|++|+.|.+.++|++... .....+.+|
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH 504 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGH 504 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe--cCCCceEEecccccceeeecccCc-eEEEEeeCC
Confidence 11212110 0 00112235567999999 899999999999999999999964 468899999
Q ss_pred CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 258 ~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
...|.++.|+|..+.++++|.|.+|+||.+.+..++.+|.+| ...|..+.|-.++..|++++.||-+++|++++++++.
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
+ +.+|.+. |++++-+|.+.. ++++.||.|.+|....+
T Consensus 584 t--lD~H~Dr-vWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 584 T--LDAHNDR-VWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred h--hhhccce-eEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9 8889555 699999999998 99999999999987763
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=243.79 Aligned_cols=276 Identities=11% Similarity=0.099 Sum_probs=228.8
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
+.-+++++.|..+.+|++...+...-..++.|.+|.+-+.-++++ +||++.++++.|+++++||+.+++....+.+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s----~dg~~alS~swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS----SDGNFALSASWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc----cCCceEEeccccceEEEEEecCCcEEEEEEe
Confidence 355899999999999999875444445678889998887666665 4778999999999999999999999999988
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
|. .-+.++++..... ++++++.|.++.+|++-... ...+-+..+.+.|.|+.|+|+
T Consensus 104 H~--------~dVlsva~s~dn~--------qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 104 HT--------KDVLSVAFSTDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred cC--------CceEEEEecCCCc--------eeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcCC
Confidence 76 6788888877555 99999999999999975432 233333333678999999997
Q ss_pred --CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014114 174 --EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 174 --~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
..+|++++.|++|++||+.+.+....+.+|. ..++.+++ +|||.+.++|+.||.+.+||++.++. +
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~v--SpDGslcasGgkdg~~~LwdL~~~k~-l 227 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTV--SPDGSLCASGGKDGEAMLWDLNEGKN-L 227 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEE--CCCCCEEecCCCCceEEEEEccCCce-e
Confidence 7899999999999999999999988888876 77999999 99999999999999999999998775 5
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc--------cCcEEEEEEcCCCCEEEEEeCCC
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
..+ .|...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+.... .....+++|+++|..|++|-.|+
T Consensus 228 ysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 228 YSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred Eec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 554 467899999999987666555 55569999999988877665321 23467789999999999999999
Q ss_pred eEEEEeCC
Q 014114 324 YLRFWDIK 331 (430)
Q Consensus 324 ~v~iwd~~ 331 (430)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=268.48 Aligned_cols=283 Identities=14% Similarity=0.177 Sum_probs=244.0
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+..+.| .|+|+.|++|+..|.+.+|+...-.....++ .|+++|.++.|..... .++++..+|
T Consensus 99 V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEtilQ--------aHDs~Vr~m~ws~~g~--------wmiSgD~gG 160 (464)
T KOG0284|consen 99 VNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFETILQ--------AHDSPVRTMKWSHNGT--------WMISGDKGG 160 (464)
T ss_pred eeeEEE--cCCCceeEeecccccEEEecCceeeHHHHhh--------hhcccceeEEEccCCC--------EEEEcCCCc
Confidence 445556 8899999999999999999974333323333 4557899999988665 999999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.|++|..... .++.....|...|++++|+|+...+++++.||+|+|||....+....+.+|.
T Consensus 161 ~iKyWqpnmn---------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg--------- 222 (464)
T KOG0284|consen 161 MIKYWQPNMN---------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG--------- 222 (464)
T ss_pred eEEecccchh---------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC---------
Confidence 9999997753 4555666677899999999999999999999999999998887777777775
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
--|.+++| +|...+|++++.|..|++||.+++.+ +.++..|...|..+.|+|++++|++++.|..+++||+++.+.+
T Consensus 223 wdVksvdW--HP~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 223 WDVKSVDW--HPTKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCcceecc--CCccceeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 45899999 78999999999999999999999875 8899999999999999999999999999999999999999999
Q ss_pred eEEeccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEE
Q 014114 294 GCFIGKCSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI 371 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~v 371 (430)
+.+++| ...|+++.|+|- ..+|.+|+.||.|..|.+...+++..+ -.+| ...|++++|+|-|.+ ++++.|.++++
T Consensus 300 ~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 300 FTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-PPAH-DGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred HHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCC-Cccc-ccceeeeeccccceeEeecCCCcceee
Confidence 999998 999999999995 468899999999999999877777764 3456 445799999999999 99999999999
Q ss_pred ecCCCCC
Q 014114 372 QNGNDTQ 378 (430)
Q Consensus 372 w~~~~~~ 378 (430)
|..+...
T Consensus 377 w~r~rp~ 383 (464)
T KOG0284|consen 377 WTRNRPG 383 (464)
T ss_pred eccCCCC
Confidence 9987543
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-37 Score=281.57 Aligned_cols=207 Identities=19% Similarity=0.296 Sum_probs=194.5
Q ss_pred eeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC
Q 014114 158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 237 (430)
...|.++|....|+|+.++|++++.|+++++|.+.+..++..+.+|. .+|..+.| +|.|.+||+++.|+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~---------~PVwdV~F--~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL---------APVWDVQF--APRGYYFATASHDQ 515 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC---------cceeeEEe--cCCceEEEecCCCc
Confidence 45799999999999999999999999999999999999999888876 77999999 89999999999999
Q ss_pred cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
+.++|.... ..|.+.+.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.|.+| .++|.+++|||+|++|+
T Consensus 516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEe
Confidence 999999988 4579999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCCCc
Q 014114 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQED 380 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~~~ 380 (430)
+|+.||.|.|||+.++.++.. +.+| .+.+.++.|+.||.+ ++++.|.+|++||.......
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~--l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQ--LKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ecccCCcEEEEEcCCCcchhh--hhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999998 7888 566799999999999 99999999999998765443
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.3e-36 Score=255.56 Aligned_cols=269 Identities=13% Similarity=0.228 Sum_probs=233.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.-|+||..||.+++|+..+ .++.+|..|.++ ++++.| +..|.||++++.||++.|||..+|.....+..|
T Consensus 248 ~~LatG~~~G~~riw~~~G------~l~~tl~~HkgP--I~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKDG------NLISTLGQHKGP--IFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred CeEEEeecCcEEEEEecCc------hhhhhhhccCCc--eEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 4589999999999999999 688999999999 677777 667899999999999999999999998888876
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.. +-..+.|... ..|++++.|+.++|+.+... .++..+. .|.+.|.++.|+|.+
T Consensus 318 s~--------~~lDVdW~~~---------~~F~ts~td~~i~V~kv~~~--------~P~~t~~-GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 318 SA--------PALDVDWQSN---------DEFATSSTDGCIHVCKVGED--------RPVKTFI-GHHGEVNALKWNPTG 371 (524)
T ss_pred cC--------CccceEEecC---------ceEeecCCCceEEEEEecCC--------Ccceeee-cccCceEEEEECCCC
Confidence 52 2234556543 36999999999999998643 4566666 488999999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee-------CCCCCEEEEEeCCCcEEEEECCCC
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-------IDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~~~~~dg~i~~wd~~~~ 247 (430)
.+|++++.|++++||+.........+..|. ..|..+.|.| +..+..+++++.|++|++||+..+
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs---------kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHS---------KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhc---------cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 999999999999999999888888888876 3466666621 123457999999999999999997
Q ss_pred CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 014114 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i 327 (430)
. ++..|..|..+|++++|+|+|+++|+|+.||.|+||++++++.++.+.+ .+.|..++|+.+|..|..+-.|+.+++
T Consensus 443 v-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 443 V-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred c-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 6 5899999999999999999999999999999999999999999999988 678999999999999999999999999
Q ss_pred EeCC
Q 014114 328 WDIK 331 (430)
Q Consensus 328 wd~~ 331 (430)
.|++
T Consensus 520 ldlr 523 (524)
T KOG0273|consen 520 LDLR 523 (524)
T ss_pred EEec
Confidence 9975
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-35 Score=254.23 Aligned_cols=313 Identities=14% Similarity=0.142 Sum_probs=252.8
Q ss_pred ceEeecCCCcEEEEEecCc-cCC--cchhheec--CCCC--cceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee
Q 014114 16 RALTFDSLGLIKVIEARGE-DGG--VPKVVERW--GDPH--SSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~-~~~--~~~~~~~~--~~~~--~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
.+++|+.|-..++|++... ... +..+...+ .++. ...-+.++.| +.+|.+||+|..||.++||+. +|.++
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~-~G~l~ 269 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNK-DGNLI 269 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEec-Cchhh
Confidence 4677888999999999741 111 11111112 2221 1223555666 667889999999999999996 78888
Q ss_pred eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEE
Q 014114 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
.++..|. .+|.+++|....+ ++++++.|+++.+|+.... +++....-|..+-..+
T Consensus 270 ~tl~~Hk--------gPI~slKWnk~G~--------yilS~~vD~ttilwd~~~g---------~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 270 STLGQHK--------GPIFSLKWNKKGT--------YILSGGVDGTTILWDAHTG---------TVKQQFEFHSAPALDV 324 (524)
T ss_pred hhhhccC--------CceEEEEEcCCCC--------EEEeccCCccEEEEeccCc---------eEEEeeeeccCCccce
Confidence 8887655 7999999987555 9999999999999997542 2222222344444667
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC
Q 014114 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 169 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 248 (430)
.|- +...+++++.|+.|+++.+....++.++.+|. +.|.++.| +|.+.+|++++.|++++||.+....
T Consensus 325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred EEe-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEE--CCCCceEEEecCCCeeEeeecCCCc
Confidence 776 45678889999999999999999999998876 77999999 8999999999999999999988755
Q ss_pred cceEEeeecCCCeEEEEeeCCC---------CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEE
Q 014114 249 RPVMSFDFRETPIKAVAEEPDS---------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
.+..+.+|+..|..+.|+|.| ..+++++.|++|++||+..+.++++|..| ..+|++++|+|+|+++|+|
T Consensus 393 -~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 393 -SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred -chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEec
Confidence 488899999999999999964 47899999999999999999999999998 9999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
+.||.|.||++++++.++. +.+ ...|..++|+.+|.. ..+..|+.+.+.|.
T Consensus 471 s~dg~V~iws~~~~~l~~s--~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKS--YQG--TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCCCeeEeccccchheeEe--ecC--CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 9999999999999999988 333 344799999999998 77778888888765
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=246.33 Aligned_cols=310 Identities=14% Similarity=0.096 Sum_probs=250.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+.|..-.||++.++ .....+.+|..++.++.|++ +|.|||+|..+|.|+||...++.....+..
T Consensus 77 ~l~aTGGgDD~AflW~~~~g-----e~~~eltgHKDSVt~~~Fsh----dgtlLATGdmsG~v~v~~~stg~~~~~~~~- 146 (399)
T KOG0296|consen 77 NLVATGGGDDLAFLWDISTG-----EFAGELTGHKDSVTCCSFSH----DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ- 146 (399)
T ss_pred ceEEecCCCceEEEEEccCC-----cceeEecCCCCceEEEEEcc----CceEEEecCCCccEEEEEcccCceEEEeec-
Confidence 45789999999999999997 57788899999977777766 678999999999999999999988777742
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
....+.=+.|.+.. ..|++|+.||.+.+|.+... +..+++. .|..++.+=.|.|+|
T Consensus 147 -------e~~dieWl~WHp~a--------~illAG~~DGsvWmw~ip~~--------~~~kv~~-Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 147 -------EVEDIEWLKWHPRA--------HILLAGSTDGSVWMWQIPSQ--------ALCKVMS-GHNSPCTCGEFIPDG 202 (399)
T ss_pred -------ccCceEEEEecccc--------cEEEeecCCCcEEEEECCCc--------ceeeEec-CCCCCcccccccCCC
Confidence 11234445555533 49999999999999998653 2445555 578899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
+.++++..||+|++||+.+++++..+..... ...+++.+ +..+..++.|+.++.+++-+..+++. +...
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------~~~~~~~~--~~~~~~~~~g~~e~~~~~~~~~sgKV-v~~~ 271 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------LELPCISL--NLAGSTLTKGNSEGVACGVNNGSGKV-VNCN 271 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEeccccc--------CcCCcccc--ccccceeEeccCCccEEEEccccceE-EEec
Confidence 9999999999999999999999988875431 33566677 66788888888888888888777653 3333
Q ss_pred e--------ecCCCeEEEEe---eCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 255 D--------FRETPIKAVAE---EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 255 ~--------~~~~~i~~~~~---s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
. .+...+.|+.+ +..-.+.|+|+.||+|.|||+...++.+.+. | ..+|..+.|-+ ..+|++++.||
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC-cchheeeccCc
Confidence 3 23444455544 4455788999999999999998766655554 4 78899999988 78999999999
Q ss_pred eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
.|+.||.++|+++.. +.+|... |.+++++|++++ ++++.|+..+||+.+
T Consensus 349 ~v~~wDaRtG~l~~~--y~GH~~~-Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFT--YTGHQMG-ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccceEEE--EecCchh-eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999998 7899555 699999999999 999999999999864
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=264.57 Aligned_cols=336 Identities=16% Similarity=0.216 Sum_probs=253.2
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCC-CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGD-PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..+|+++...+.+++|++.++ +++..|.. |+.++..+++ .|.|.+|++|+.||.++|||+..+.+...++
T Consensus 74 ~~~L~~a~rs~llrv~~L~tg-----k~irswKa~He~Pvi~ma~----~~~g~LlAtggaD~~v~VWdi~~~~~th~fk 144 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTG-----KLIRSWKAIHEAPVITMAF----DPTGTLLATGGADGRVKVWDIKNGYCTHSFK 144 (775)
T ss_pred ccEEEEeeccceEEEEEcccc-----hHhHhHhhccCCCeEEEEE----cCCCceEEeccccceEEEEEeeCCEEEEEec
Confidence 578999999999999999997 89999998 8999554444 5567799999999999999999999999999
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc------------------------ccc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAE 148 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~------------------------~~~ 148 (430)
+|. +.+..+.+.+... ...|+++..|+.+++|++..... .+.
T Consensus 145 G~g--------GvVssl~F~~~~~------~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 145 GHG--------GVVSSLLFHPHWN------RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred CCC--------ceEEEEEeCCccc------hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEe
Confidence 865 3333343333222 13566777777777777653221 123
Q ss_pred CCcceeeEEeeccC---------C--------------------------------------------------------
Q 014114 149 SSCSTVKSWNVCAS---------G-------------------------------------------------------- 163 (430)
Q Consensus 149 ~~~~~i~~~~~~~~---------~-------------------------------------------------------- 163 (430)
+.|+.+.+|+...- .
T Consensus 211 ~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~ 290 (775)
T KOG0319|consen 211 GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAI 290 (775)
T ss_pred ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceec
Confidence 44555555554210 0
Q ss_pred ----------------------------------ceEEEEE-cCCCCEEEEecCCCeEEEEECCCCce------------
Q 014114 164 ----------------------------------TIAFSKV-DISEKFSLFGGKGVEVNVWDLDKCEK------------ 196 (430)
Q Consensus 164 ----------------------------------~i~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~------------ 196 (430)
.|..++| .|+.++|++++..+.+++|++.+..+
T Consensus 291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlS 370 (775)
T KOG0319|consen 291 ESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLS 370 (775)
T ss_pred cccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheee
Confidence 1333333 45667777788888888887765321
Q ss_pred --------------------eeeecCCCCC----CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC--c-
Q 014114 197 --------------------IWTAKPPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R- 249 (430)
Q Consensus 197 --------------------~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~- 249 (430)
++.+...... .....|.+.|.++++. .....+|++++.|+++++|++...+ .
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~-~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS-KLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec-ccCccEEEEecCCceEEEecCCCcccccc
Confidence 1222111000 1122356778888883 3445689999999999999998621 1
Q ss_pred -ceE----EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCe
Q 014114 250 -PVM----SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 250 -~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~ 324 (430)
+.. ....|...|++++++|+..+|++||.|.+.+||++...+.+.++.+| ...|+++.|+|..+.++|+|.|++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEeccccceeEeccCCce
Confidence 111 23468999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 325 LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 325 v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
|+||.+.++.++.+ +.||... |..+.|-.+|.. ++++.||.+++|+....
T Consensus 529 vKIW~is~fSClkT--~eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 529 VKIWSISTFSCLKT--FEGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEEEEeccceeeee--ecCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 99999999999999 8899655 588899988888 99999999999998763
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=243.46 Aligned_cols=269 Identities=13% Similarity=0.174 Sum_probs=231.5
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-CceeeeeeecC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAG 95 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~ 95 (430)
++++++|++|++||..++ .+...+.+|..+ +..+++ +..|++|++++.|=.+++||..+ .+++....+|.
T Consensus 123 v~~as~d~tikv~D~~tg-----~~e~~LrGHt~s--v~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~ 193 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETG-----ELERSLRGHTDS--VFDISF--DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE 193 (406)
T ss_pred EEEecCCceEEEEEccch-----hhhhhhhccccc--eeEEEE--ecCccEEEecCCccchhheeHHHHHHHHHHhcCcc
Confidence 577788999999999997 778889999998 666666 55689999999999999999865 45555555543
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 175 (430)
..|.++.+++... ++++++.|.+++.|++.... .++.+. .|...|..+..+.+|.
T Consensus 194 --------h~vS~V~f~P~gd--------~ilS~srD~tik~We~~tg~--------cv~t~~-~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 194 --------HGVSSVFFLPLGD--------HILSCSRDNTIKAWECDTGY--------CVKTFP-GHSEWVRMVRVNQDGT 248 (406)
T ss_pred --------cceeeEEEEecCC--------eeeecccccceeEEecccce--------eEEecc-CchHhEEEEEecCCee
Confidence 5788888988655 99999999999999988654 555555 5677899999999999
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee----------CC---CCCEEEEEeCCCcEEEE
Q 014114 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----------ID---DHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 176 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~---~~~~l~~~~~dg~i~~w 242 (430)
++++++.|.+|++|-+.++++...+..|+ -.|.+++|.+ .+ .+.++.+++.|++|++|
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 99999999999999999998877777765 4567777642 01 23589999999999999
Q ss_pred ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC
Q 014114 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
|+.++.+ +.++.+|...|+.++|+|.|+||+++..|+++++||+++++++..+..| ..-|+++.|+.+..++++|+-|
T Consensus 320 dv~tg~c-L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 320 DVSTGMC-LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred eccCCeE-EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEecccc
Confidence 9999874 8999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CeEEEEeC
Q 014114 323 SYLRFWDI 330 (430)
Q Consensus 323 ~~v~iwd~ 330 (430)
.++++|.-
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999974
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.6e-37 Score=252.25 Aligned_cols=269 Identities=14% Similarity=0.225 Sum_probs=226.7
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+..+++|..|.+|+|||...- .....+.+|++++ +++-++.. .|++|+.|.+|+|||+++|+++..+-
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSV--LCLqyd~r----viisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSV--LCLQYDER----VIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred cchhhhcccccCceEEeccccH-----HHHHhhhcCCCcE--Eeeeccce----EEEecCCCceEEEEeccCCchhhHHh
Confidence 3467899999999999999985 6778899999995 45555333 79999999999999999999999887
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.|. ..+..+.+.+ +++++++.|..+.||++....+ .+++..-..|...|..+.|+
T Consensus 275 hHc--------eaVLhlrf~n----------g~mvtcSkDrsiaVWdm~sps~------it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 275 HHC--------EAVLHLRFSN----------GYMVTCSKDRSIAVWDMASPTD------ITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred hhc--------ceeEEEEEeC----------CEEEEecCCceeEEEeccCchH------HHHHHHHhhhhhheeeeccc-
Confidence 654 5787777743 5999999999999999975542 23333344677889999885
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
.+++++++.|.+|++|++.+++.+.++.+|+ ..|.|+.| .++++++|+.|.+|++||+..+.+ ++
T Consensus 330 -~kyIVsASgDRTikvW~~st~efvRtl~gHk---------RGIAClQY----r~rlvVSGSSDntIRlwdi~~G~c-LR 394 (499)
T KOG0281|consen 330 -DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGAC-LR 394 (499)
T ss_pred -cceEEEecCCceEEEEeccceeeehhhhccc---------ccceehhc----cCeEEEecCCCceEEEEeccccHH-HH
Confidence 4699999999999999999999999999987 55888888 789999999999999999999775 89
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe---------EEeEEeccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
.+++|+.-|.++.|. .+.|++|+.||+|++||+.++. ++.++..| .+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccCCC
Confidence 999999999999994 5699999999999999998753 34445555 889999999 777899999999
Q ss_pred eEEEEeCCCCceee
Q 014114 324 YLRFWDIKTRQLLS 337 (430)
Q Consensus 324 ~v~iwd~~~~~~~~ 337 (430)
+|.|||+.++.+-.
T Consensus 470 tILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 470 TILIWDFLNGPPSA 483 (499)
T ss_pred eEEEEEcCCCCccc
Confidence 99999998776554
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=255.02 Aligned_cols=321 Identities=17% Similarity=0.180 Sum_probs=253.9
Q ss_pred CcceEeecCCCcEEEEEecCccC--------------------Ccch-------hheecCCCCcceEEEEeccCCCCCCc
Q 014114 14 PLRALTFDSLGLIKVIEARGEDG--------------------GVPK-------VVERWGDPHSSKCVLAASIDDSQNDP 66 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~--------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~g~ 66 (430)
.+.++|-+.||.+.+|.....+. +..+ .....--...+..+.|..+ ++..+
T Consensus 201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f--H~~t~ 278 (893)
T KOG0291|consen 201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF--HKGTN 278 (893)
T ss_pred cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec--cCCce
Confidence 36799999999999998872110 0000 0001111123355777888 88888
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCeeEEEEeeeecc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKV 145 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~v~~~~~~~~ 145 (430)
+|++|-..|...+|++....+++.+.. ...+|..+.+..... .++.+ +.-|.+.||+.....
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSi--------s~~~I~t~~~N~tGD--------WiA~g~~klgQLlVweWqsEs- 341 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSI--------SDQKILTVSFNSTGD--------WIAFGCSKLGQLLVWEWQSES- 341 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeec--------ccceeeEEEecccCC--------EEEEcCCccceEEEEEeeccc-
Confidence 999999999999999998888888865 224677777655433 55554 455899999976432
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.| +-...|...+.+++++|||+++++|+.||.|++||...+-|+.++..|. ..|+.+.| ..
T Consensus 342 -------YV-lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt---------s~Vt~v~f--~~ 402 (893)
T KOG0291|consen 342 -------YV-LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT---------SGVTAVQF--TA 402 (893)
T ss_pred -------ee-eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC---------CceEEEEE--Ee
Confidence 11 1123567889999999999999999999999999999999999999886 77999999 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeec-CCCeEEEEeeCCCCEEEEEcCCC-CEEEEEccCCeEEeEEeccccCc
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSG-DLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
.++.+++.+.||+|+.||+...+. .+++... .....|++..|.|.++++|+.|. .|.+|++++|+.+-.+.+| .++
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgP 480 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGP 480 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCc
Confidence 999999999999999999998664 6777653 34677899999999999999885 5999999999999999999 999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
|.+++|+|++..|+++++|.+||+||+-... .+.++. . ..-+++++|+|||.- +.+.-||.|.+||.....
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~---i-~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE---I-RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe---e-ccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 9999999999999999999999999987653 233321 2 223699999999999 889999999999987643
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-36 Score=254.09 Aligned_cols=270 Identities=17% Similarity=0.216 Sum_probs=228.3
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-||+||+..|.+.||+...- .....++.|+..|+.+.+ +++|.++++|+.+|.|++|+. +...+..+..|
T Consensus 109 RRLltgs~SGEFtLWNg~~f-----nFEtilQaHDs~Vr~m~w----s~~g~wmiSgD~gG~iKyWqp-nmnnVk~~~ah 178 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSF-----NFETILQAHDSPVRTMKW----SHNGTWMISGDKGGMIKYWQP-NMNNVKIIQAH 178 (464)
T ss_pred ceeEeecccccEEEecCcee-----eHHHHhhhhcccceeEEE----ccCCCEEEEcCCCceEEeccc-chhhhHHhhHh
Confidence 68999999999999998652 334456779998655555 557889999999999999997 44445555553
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ...|.++++.++. ..|++++.||+++||+....... ++. ..|+-.|.+++|+|..
T Consensus 179 h-------~eaIRdlafSpnD--------skF~t~SdDg~ikiWdf~~~kee--------~vL-~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 179 H-------AEAIRDLAFSPND--------SKFLTCSDDGTIKIWDFRMPKEE--------RVL-RGHGWDVKSVDWHPTK 234 (464)
T ss_pred h-------hhhhheeccCCCC--------ceeEEecCCCeEEEEeccCCchh--------hee-ccCCCCcceeccCCcc
Confidence 2 2478888887744 49999999999999997654432 122 3677889999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
.+|++|+.|+.|++||.++++++.++..|. ..|..+.| ++++++|++++.|..++++|+++.+. +..+
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~ 302 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMKE-LFTY 302 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEE--cCCCCeeEEccCCceEEEEehhHhHH-HHHh
Confidence 999999999999999999999999999887 77999999 89999999999999999999997554 8899
Q ss_pred eecCCCeEEEEeeCC-CCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 255 DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
++|...++++.|+|- ..+|.+|+.||.|..|.+...+++..+...|...|++++|+|-|.+|++|+.|.++++|.-
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999999999999994 4688899999999999998777777776556999999999999999999999999999964
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=253.91 Aligned_cols=332 Identities=15% Similarity=0.168 Sum_probs=250.8
Q ss_pred CCcceEeecCCCcEEEEEecCccC---CcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDG---GVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
|+.++++.+....+.||...+.-. ....+..++.+|-..+ +.+.| +.|.++|++|+.|-.++||++...+-+.
T Consensus 106 Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi--~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~ 181 (893)
T KOG0291|consen 106 PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDI--TSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLF 181 (893)
T ss_pred CCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccce--eEEEe--ccCCceEEeccccceEEEEEeccccccc
Confidence 457888888889999999876322 2334456677777774 44544 5567899999999999999997666533
Q ss_pred eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccccc--------C--------Ccc-
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--------S--------SCS- 152 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~--------~~~- 152 (430)
.+. +.+|.++|++..+-.++ ..+++.+.||.+.+|.+...|.... . .++
T Consensus 182 ~~~------l~gHkd~VvacfF~~~~--------~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 182 TYA------LNGHKDYVVACFFGANS--------LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred eEe------ccCCCcceEEEEeccCc--------ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 222 12455788765555433 3899999999999999874332100 0 000
Q ss_pred --------eeeEEeeccCC------------------------------------------ceEEEEEcCCCCEEEEecC
Q 014114 153 --------TVKSWNVCASG------------------------------------------TIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 153 --------~i~~~~~~~~~------------------------------------------~i~~~~~~~~~~~l~~~~~ 182 (430)
.-+.|-..... +|..++|+..|..|+.|+.
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 00111111112 3444555555555555543
Q ss_pred C-CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 183 G-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 183 d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
. |.+.+|++.+..-+...++|. ..++++++ +|||+++++|+.||.|++||...+-+ +.+|..|++.|
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~---------~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~SgfC-~vTFteHts~V 395 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHS---------DRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGFC-FVTFTEHTSGV 395 (893)
T ss_pred ccceEEEEEeeccceeeeccccc---------cceeeEEE--CCCCcEEEeccCCCcEEEEeccCceE-EEEeccCCCce
Confidence 3 556666665555555545443 67999999 99999999999999999999999775 89999999999
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEEe
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~ 340 (430)
+.+.|+..|+.+++++.||+|+.||+...+..++|.....-...|++..|.|.++++|+.|. .|++|++++|+.+-.
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-- 473 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-- 473 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--
Confidence 99999999999999999999999999999999999886566788999999999999999886 599999999999998
Q ss_pred eccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 341 LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 341 ~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
+.||. ++|.+++|+|+|.. ++++.|.+|++|+.-..
T Consensus 474 LsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 474 LSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred hcCCC-CcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 88994 55699999999999 99999999999998653
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-33 Score=282.87 Aligned_cols=318 Identities=13% Similarity=0.085 Sum_probs=237.6
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCC
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 102 (430)
+|.+++|+..............+..|... +.+++| +|+|++||+|+.|+.|+||+......... ..+.+.....+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNL--VCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGR-DIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCc--EEEEEE--CCCCCEEEEEeCCCEEEEEECCccccccc-ccccceEEecc
Confidence 67888998875310000001123336666 455555 67889999999999999999753210000 00000000011
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEec
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG 181 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 181 (430)
...+.++.|.+.. ...+++++.||.+++|++.... .+..+. .|...|.+++|+| ++.+|++|+
T Consensus 532 ~~~v~~l~~~~~~-------~~~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 532 RSKLSGICWNSYI-------KSQVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred cCceeeEEeccCC-------CCEEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCCCCEEEEEc
Confidence 2356667665432 2489999999999999986432 333333 5788999999997 788999999
Q ss_pred CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 182 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
.|+.|++||+.++..+..+..+ ..+.++.|. ++++.+|++|+.|+.|++||++....++..+.+|...|
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V 664 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK----------ANICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC----------CCeEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence 9999999999998888777543 347888885 56799999999999999999998665677888999999
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccC------CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
.++.|. ++.+|++++.|+.|++||++. ..++..+.+| ...+..++|+|++.+|++|+.|+.|++|+.....+
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 999997 678999999999999999974 3567888888 88999999999999999999999999999876655
Q ss_pred eeEEeec----------cccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 336 LSAVFLK----------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 336 ~~~~~~~----------~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
+..+.+. .+....|.+++|+|++.. ++++.+|.|+||+.
T Consensus 743 ~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 743 VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 4332111 112345899999999999 99999999999985
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-33 Score=239.92 Aligned_cols=319 Identities=13% Similarity=0.130 Sum_probs=232.4
Q ss_pred CcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee--eeeecCCCCCCC
Q 014114 24 GLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQP 101 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~ 101 (430)
..|.+-+++.. .....|.+|...+++..+ +|.|-|+|+|...|.|+|||....+.+. +++.+
T Consensus 39 ksv~ir~i~~~-----~~~~iYtEH~~~vtVAky----SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~------- 102 (603)
T KOG0318|consen 39 KSVIIRNIDNP-----ASVDIYTEHAHQVTVAKY----SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL------- 102 (603)
T ss_pred CEEEEEECCCc-----cceeeeccccceeEEEEe----CCCceEEeecCCcCcEEEEeccCcceeeeeeeeec-------
Confidence 45666677664 567889999888666666 5568899999999999999986533222 22221
Q ss_pred CCCceEEEEeeccCccccccCCceEEEEccC----CeeEEEEe-----------------eeecc-----cccCCcceee
Q 014114 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSI-----------------EVTKV-----SAESSCSTVK 155 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~v~~~-----------------~~~~~-----~~~~~~~~i~ 155 (430)
.++|..+.|-.... ++++.++. |.+..||- .+.+. .++++|.++.
T Consensus 103 -aG~I~Di~Wd~ds~--------RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ 173 (603)
T KOG0318|consen 103 -AGPIKDISWDFDSK--------RIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVA 173 (603)
T ss_pred -ccccccceeCCCCc--------EEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEE
Confidence 13555555543222 44444331 22333331 11111 2455565655
Q ss_pred EEee----------ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 156 SWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 156 ~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+|+- .|..-|.|+.|+|+|.++++.+.||++.+||-.+++.+..+.... .|.+.|.+++| +|
T Consensus 174 ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~------aHkGsIfalsW--sP 245 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD------AHKGSIFALSW--SP 245 (603)
T ss_pred EeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC------CccccEEEEEE--CC
Confidence 5542 356789999999999999999999999999999999999998422 23478999999 99
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC------------------------------------------cceEEeeecCCCeEE
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQR------------------------------------------RPVMSFDFRETPIKA 263 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~------------------------------------------~~~~~~~~~~~~i~~ 263 (430)
|+..|++++.|.+++|||+.+.+ .+...+.+|...|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 99999999999999999987532 134556689999999
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEE-----------eEEecc---------------------------------
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLL-----------GCFIGK--------------------------------- 299 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~~~~~--------------------------------- 299 (430)
+..+|++.+|++|+.||.|.-|+..++..- ..+..+
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg 405 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG 405 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC
Confidence 999999999999999999999998653211 000000
Q ss_pred --------------------------------------------------------------------------------
Q 014114 300 -------------------------------------------------------------------------------- 299 (430)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (430)
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~ 485 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE 485 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec
Confidence
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
|.++|+++++|||+.+|+++...+.|.+||+.+++.... ...-| .+.|.+++|+|+..+ ++++-|..|.||+....
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 567889999999999999998889999999888776322 12224 455799999999999 99999999999998763
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.3e-33 Score=245.99 Aligned_cols=286 Identities=17% Similarity=0.283 Sum_probs=238.1
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
.++.+|...+. ++++ +|++++|++++.||.|.+|++.+++....+..+. ..+..+.+.+...
T Consensus 3 ~~~~~h~~~i~--~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~------ 64 (289)
T cd00200 3 RTLKGHTGGVT--CVAF--SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--------GPVRDVAASADGT------ 64 (289)
T ss_pred hHhcccCCCEE--EEEE--cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--------cceeEEEECCCCC------
Confidence 45667888754 4445 6678899999999999999998887666665543 4566677766443
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecC
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 202 (430)
.+++++.+|.+.+|++.... .+..+. .+...+.++.|+++++++++++.++.|.+||+.+++....+..
T Consensus 65 --~l~~~~~~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 65 --YLASGSSDKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred --EEEEEcCCCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 89999999999999987432 333333 4556899999999988999888899999999998888887775
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
+. ..+.++.| +|++.++++++.++.|++||++.++ ++..+..|...+.++.|+|+++.+++++.++.|
T Consensus 134 ~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 134 HT---------DWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CC---------CcEEEEEE--cCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 43 56999999 7888888888889999999998755 477788888899999999999999999999999
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~ 361 (430)
++||+++++.+..+..| ...+.++.|+|++.++++++.|+.|++||+.+++.+.. +..|. ..+.+++|+|++.+ +
T Consensus 202 ~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 202 KLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT--LSGHT-NSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE--ccccC-CcEEEEEECCCCCEEE
Confidence 99999999998888777 78999999999988888888899999999998888887 44553 44799999999888 9
Q ss_pred eecCCCcEEEec
Q 014114 362 AAADAPMLEIQN 373 (430)
Q Consensus 362 ~~~~d~~v~vw~ 373 (430)
+++.|+.+++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=229.81 Aligned_cols=287 Identities=14% Similarity=0.207 Sum_probs=234.7
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC-CCceeeeeeecCCCCCCCCCCceEEEEeeccCccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
...+.+.+|++.+. ...| +|+|.+||+|+.|..|.+|++. ..+-...+++|+ ..|..+.+....
T Consensus 38 ap~m~l~gh~geI~--~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs--------gAVM~l~~~~d~--- 102 (338)
T KOG0265|consen 38 APIMLLPGHKGEIY--TIKF--HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS--------GAVMELHGMRDG--- 102 (338)
T ss_pred chhhhcCCCcceEE--EEEE--CCCCCeEeecCCcceEEEEeccccccceeeecccc--------ceeEeeeeccCC---
Confidence 44566778888854 4555 7788999999999999999963 233344555554 688888887744
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCcee
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~ 197 (430)
..+++++.|.++..||++... .++.+. .|...|..+.-+. ...++.+++.|+++++||+++...+
T Consensus 103 -----s~i~S~gtDk~v~~wD~~tG~--------~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 103 -----SHILSCGTDKTVRGWDAETGK--------RIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred -----CEEEEecCCceEEEEecccce--------eeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 499999999999999998654 444444 3566777776443 3356778899999999999998888
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
.++... -.++++.| ...+..+.+|+-|+.|++||++... ....+.+|..+|+.+..+|+|.++.+-+
T Consensus 169 ~t~~~k----------yqltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 169 KTFENK----------YQLTAVGF--KDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred hccccc----------eeEEEEEe--cccccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCcccccc
Confidence 887653 55899999 7888999999999999999999865 5899999999999999999999999999
Q ss_pred CCCCEEEEEccC----CeEEeEEecc-c--cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEE
Q 014114 278 GSGDLASVDIRT----GKLLGCFIGK-C--SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 278 ~dg~v~iwd~~~----~~~~~~~~~~-~--~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~ 350 (430)
.|.++++||++- .+++..+.+| | ......++|+|++..+.+|+.|+.+++||..+...+.. ++||... |.
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--lpGh~gs-vn 312 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK--LPGHYGS-VN 312 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE--cCCccee-EE
Confidence 999999999984 3457777765 1 22455679999999999999999999999998888887 8999655 69
Q ss_pred EeeecCCcce-eeecCCCcEEE
Q 014114 351 DSAFADKEVA-NAAADAPMLEI 371 (430)
Q Consensus 351 ~~~~s~~g~~-~~~~~d~~v~v 371 (430)
+++|+|...+ ++++.|.+|.+
T Consensus 313 ~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeeecCCCcEEEEeccCceeEe
Confidence 9999999999 99999999876
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-34 Score=261.91 Aligned_cols=203 Identities=19% Similarity=0.293 Sum_probs=187.3
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEe
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
+|.++|.+..+.+... .|+++++|+++++|++.... .+-.|. .|..+|+.+.|+|.|-++|++
T Consensus 449 GH~GPVyg~sFsPd~r--------fLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRR--------FLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred cCCCceeeeeeccccc--------ceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEEEec
Confidence 5668899888888665 99999999999999998654 445566 788999999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC
Q 014114 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 181 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 260 (430)
+.|++.++|.......++.+.+|. .-|.|+.| +|+.+++++|+.|.+|++||..++.. ++.|.+|.++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghl---------sDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~ 579 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGP 579 (707)
T ss_pred CCCceeeeeecccCCchhhhcccc---------cccceEEE--CCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCc
Confidence 999999999999988888888876 66999999 89999999999999999999999875 9999999999
Q ss_pred eEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
|.+++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|.++.|+.+|..||+|+.|.+|++||+..-
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999999 999999999999999999999999999998653
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=258.70 Aligned_cols=287 Identities=18% Similarity=0.217 Sum_probs=240.8
Q ss_pred CcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 49 HSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
..++.+ +.+ +|+|.+|++++.|+.|++|+...++ .+..+.+ +...|..+.|.+... .+
T Consensus 159 ~~sv~~--~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~--------h~~~v~~~~fs~d~~--------~l 218 (456)
T KOG0266|consen 159 CPSVTC--VDF--SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG--------HTRGVSDVAFSPDGS--------YL 218 (456)
T ss_pred cCceEE--EEE--cCCCCeEEEccCCCcEEEeecccccchhhccccc--------cccceeeeEECCCCc--------EE
Confidence 444434 444 7788899999999999999997776 4555544 336788888887544 99
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 206 (430)
++++.|++++||++.... ..++... .|...|++++|+|.++++++|+.|++|++||+++++++..+..|.
T Consensus 219 ~s~s~D~tiriwd~~~~~-------~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-- 288 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDG-------RNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-- 288 (456)
T ss_pred EEecCCceEEEeeccCCC-------eEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC--
Confidence 999999999999983221 2556666 789999999999999999999999999999999999999999987
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-ceEEeeecCC--CeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
..|++++| ++++++|++++.|+.|++||+.++.. +...+..+.. +++++.|+|++.+|++++.|+.++
T Consensus 289 -------~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 289 -------DGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred -------CceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 77999999 99999999999999999999998763 2455665554 499999999999999999999999
Q ss_pred EEEccCCeEEeEEeccccC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-
Q 014114 284 SVDIRTGKLLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~--~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~- 360 (430)
+||+..+..+..+.+|... .+.+...++.+.++++|+.|+.|++||+.++..+.. +.+|....+..+.++|...+
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~--l~~h~~~~~~~~~~~~~~~~~ 437 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR--LEGHSKAAVSDLSSHPTENLI 437 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh--hcCCCCCceeccccCCCcCee
Confidence 9999999999999998544 455556678999999999999999999999888887 66774455699999999999
Q ss_pred eeec--CCCcEEEecCCC
Q 014114 361 NAAA--DAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~--~d~~v~vw~~~~ 376 (430)
++.+ .|+.+++|..+.
T Consensus 438 ~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eecCcCCCceEEEecCCC
Confidence 7766 789999998653
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-33 Score=218.68 Aligned_cols=284 Identities=17% Similarity=0.173 Sum_probs=230.1
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
....+..+.+++.++.+ +-+|+|.++++.|.+|++|++..|.++.++.+|. ..|..++....
T Consensus 9 r~~~l~~~qgaV~avry----N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG--------~EVlD~~~s~D------ 70 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRY----NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG--------HEVLDAALSSD------ 70 (307)
T ss_pred hceeecccccceEEEEE----ccCCCEEEEcCCCceEEeecccccceeeeecCCC--------ceeeecccccc------
Confidence 45566678888555444 4578899999999999999999999999998854 56766665543
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--Cceee
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIW 198 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~ 198 (430)
+..+++|+.|..+.+|+++... .++.|. .|.+.|..+.|+.+...+++|+.|.++++||.++ .++++
T Consensus 71 --nskf~s~GgDk~v~vwDV~TGk--------v~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 71 --NSKFASCGGDKAVQVWDVNTGK--------VDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred --ccccccCCCCceEEEEEcccCe--------eeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 3489999999999999998654 677887 6889999999999999999999999999999976 45566
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.+.... +.|.++.. .+..|+.|+.||+++.||++.+.. .... -..+|++++|+++++..++++.
T Consensus 140 ildea~---------D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l-~sDy--~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 140 ILDEAK---------DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred hhhhhc---------CceeEEEe----cccEEEeeccCCcEEEEEeeccee-ehhh--cCCcceeEEecCCCCEEEEeec
Confidence 665543 66888888 577899999999999999998763 3223 3469999999999999999999
Q ss_pred CCCEEEEEccCCeEEeEEeccccCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCSGSI--RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v--~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
|+++++.|-.+|+++..+++| ...- ...+++.....+++|++||.|++||+.....+.. ++.+....+.++.++|
T Consensus 204 ~stlrLlDk~tGklL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk--~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 204 DSTLRLLDKETGKLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK--LSVVSTVIVTDLSCHP 280 (307)
T ss_pred cceeeecccchhHHHHHhccc-ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee--eccCCceeEEeeeccc
Confidence 999999999999999999998 4433 3456777778999999999999999999998887 5555445589999999
Q ss_pred Ccce-eeecCCCcEEEec
Q 014114 357 KEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 357 ~g~~-~~~~~d~~v~vw~ 373 (430)
.-.- +++.. ..+..|.
T Consensus 281 ~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 281 TMDDFITATG-HGDLFWY 297 (307)
T ss_pred CccceeEecC-Cceecee
Confidence 8777 55444 4444443
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=249.18 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=239.8
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-CceeeeeeecCCCCCCCCCCceEEEEeeccCccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
+++..|.+|+..++++.+.+ -.+.+|++++.|+.|+||++.. ++++.++.+|. .+|..+.|.+...
T Consensus 205 k~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~--------k~Vrd~~~s~~g~-- 271 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR--------KPVRDASFNNCGT-- 271 (503)
T ss_pred hheeeccCCccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhcch--------hhhhhhhccccCC--
Confidence 56788999999866555543 1567999999999999999977 88999998876 6777777776544
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCcee
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~ 197 (430)
.+++++.|+.+++||++++.. +. .+..+..+.|+.|+|++ +.+++|+.|+.|+.||+++++.+
T Consensus 272 ------~fLS~sfD~~lKlwDtETG~~--------~~--~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 272 ------SFLSASFDRFLKLWDTETGQV--------LS--RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred ------eeeeeecceeeeeeccccceE--------EE--EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 999999999999999987552 22 33456788999999988 88899999999999999999999
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
+++..|. ..|..+.| -+++.++++.+.|+++++|+.+.+-........+.....++..+|++.++++-+
T Consensus 336 qeYd~hL---------g~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 336 QEYDRHL---------GAILDITF--VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred HHHHhhh---------hheeeeEE--ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 8888765 67999999 689999999999999999999875432223333445678899999999999999
Q ss_pred CCCCEEEEEccCCe---EEeEEeccc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEee
Q 014114 278 GSGDLASVDIRTGK---LLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 278 ~dg~v~iwd~~~~~---~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 353 (430)
.|+.|.+|.+...- ....+.+|. .+.-..+.|||||.+|++|..||.+.+||.++-+.+.. +.+| +.++..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~--lkah-~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK--LKAH-DQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc--cccC-CcceEEEE
Confidence 99999999875432 234456652 34566789999999999999999999999999999888 7778 66689999
Q ss_pred ecCCcce--eeecCCCcEEEec
Q 014114 354 FADKEVA--NAAADAPMLEIQN 373 (430)
Q Consensus 354 ~s~~g~~--~~~~~d~~v~vw~ 373 (430)
|+|.... ++++.+|.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 9998766 8999999999996
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=249.83 Aligned_cols=319 Identities=16% Similarity=0.164 Sum_probs=257.7
Q ss_pred ceEeecCCCcEEEEEecCc-cC-Ccchh--heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeee
Q 014114 16 RALTFDSLGLIKVIEARGE-DG-GVPKV--VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
.|++ -.+.+|.+|.++.. .. ..+.. ...+++|...+..++++-+ ...+++ +..+.|+||+..+.+++.++
T Consensus 337 ~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d----~~~~~S-ga~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 337 TLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD----SILLAS-GAGESIKIWNRDTLKCIRTI 410 (888)
T ss_pred eEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC----ceeeee-cCCCcEEEEEccCcceeEEe
Confidence 3444 67788999988751 11 11111 1356778888776666653 234444 45688999999999999999
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.. ..+.+..+.+... +++.|...|.+.++++...... .++ . .|.+.|++++.+
T Consensus 411 ~~----------~y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~l~-----Eti---~-AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 411 TC----------GYILASKFVPGDR--------YIVLGTKNGELQVFDLASASLV-----ETI---R-AHDGAIWSISLS 463 (888)
T ss_pred cc----------ccEEEEEecCCCc--------eEEEeccCCceEEEEeehhhhh-----hhh---h-ccccceeeeeec
Confidence 77 4777888887544 9999999999999998754422 122 2 578999999999
Q ss_pred CCCCEEEEecCCCeEEEEECCC-----CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
|++..+++|+.|.+|++||..- +..-..+..+....+. -++.|.|+.+ +||+++|+++-.|.+|++|-+.+
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~ddvL~v~~--Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LEDDVLCVSV--SPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe--ccccEEEEEE--cCCCcEEEEEeccCeEEEEEecc
Confidence 9999999999999999999742 1111112111111111 2367999999 99999999999999999999998
Q ss_pred CCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 014114 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~ 326 (430)
.+ ....+-+|.-||.|+..+||+++++||+.|..|+||-+.-|.|-..+-+| ...|+++.|-|...++.+++.|+.|+
T Consensus 540 lK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 540 LK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred ee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEEEecCcceEE
Confidence 55 47788899999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred EEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 327 FWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
-||-...+.++. +.+|... +++++.+|+|.+ ++++.|.+|++|+...
T Consensus 618 qWDg~kFe~iq~--L~~H~~e-v~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 618 QWDGEKFEEIQK--LDGHHSE-VWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eechhhhhhhee--eccchhe-eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999998 8889666 599999999999 9999999999999887
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-33 Score=246.54 Aligned_cols=284 Identities=17% Similarity=0.226 Sum_probs=238.5
Q ss_pred ecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCC
Q 014114 44 RWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
++..+... +-++.+ +|..++++++-.+|.|.|||.++...+..+..-. -+|.+..+.....
T Consensus 8 k~~~rSdR--VKsVd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--------~PvRa~kfiaRkn------- 68 (794)
T KOG0276|consen 8 KFQSRSDR--VKSVDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--------VPVRAAKFIARKN------- 68 (794)
T ss_pred HhhccCCc--eeeeec--CCCCceEEEeeecCeeEEEecccceeeeeeeecc--------cchhhheeeeccc-------
Confidence 33344454 444444 7888899999999999999999999888887622 3666667766544
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeecC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~ 202 (430)
-+++|+.|..|+||+..... .++.|. .|...|++++.+|...++++++.|-+|++||.+.. .+.+++++
T Consensus 69 -Wiv~GsDD~~IrVfnynt~e--------kV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 69 -WIVTGSDDMQIRVFNYNTGE--------KVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred -eEEEecCCceEEEEecccce--------eeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence 89999999999999987654 667777 47899999999999999999999999999999864 56678888
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC--CEEEEEcCCC
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg 280 (430)
|. ..|.+++|. +.|.+.+++++.|++|++|.+.... +..++++|...|.|+.|-+-| .+|++|+.|.
T Consensus 139 H~---------HyVMqv~fn-PkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 139 HE---------HYVMQVAFN-PKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred cc---------eEEEEEEec-CCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 76 779999996 4578899999999999999998854 689999999999999997754 6999999999
Q ss_pred CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+|+|||.++..|++++.+| ...|..+.|+|.-+++++|++||+|+||+..+.+....+ .-. ...+++++-.+.+..
T Consensus 208 tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL--n~g-leRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL--NYG-LERVWCIAAHKGDGK 283 (794)
T ss_pred eEEEeecchHHHHHHhhcc-cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh--hcC-CceEEEEeecCCCCe
Confidence 9999999999999999999 999999999999999999999999999999988877763 223 233699998887776
Q ss_pred -eeecCCCcEEE
Q 014114 361 -NAAADAPMLEI 371 (430)
Q Consensus 361 -~~~~~d~~v~v 371 (430)
+.|.++|.+.+
T Consensus 284 i~vG~Deg~i~v 295 (794)
T KOG0276|consen 284 IAVGFDEGSVTV 295 (794)
T ss_pred EEEeccCCcEEE
Confidence 66767676655
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=243.69 Aligned_cols=328 Identities=13% Similarity=0.080 Sum_probs=259.9
Q ss_pred CcccCCCCCCC--cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEec
Q 014114 4 TTTLECPGCPP--LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (430)
Q Consensus 4 ~~~~~~~~~p~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd 81 (430)
+..+-|.+..| -.++++-.+|.|.|||.++. .++..|.-.+.+++ +..| -+..+++++|+.|..|+||+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq-----tmVksfeV~~~PvR--a~kf--iaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVR--AAKF--IARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc-----eeeeeeeecccchh--hhee--eeccceEEEecCCceEEEEe
Confidence 33444555444 46788889999999999985 66777765555543 3333 22346899999999999999
Q ss_pred cCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc
Q 014114 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~ 161 (430)
+++++.+..+..|. +.|.++...+..+ ++++++.|-.+++|+.+..- ...+.|. .|
T Consensus 84 ynt~ekV~~FeAH~--------DyIR~iavHPt~P--------~vLtsSDDm~iKlW~we~~w-------a~~qtfe-GH 139 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHS--------DYIRSIAVHPTLP--------YVLTSSDDMTIKLWDWENEW-------ACEQTFE-GH 139 (794)
T ss_pred cccceeeEEeeccc--------cceeeeeecCCCC--------eEEecCCccEEEEeeccCce-------eeeeEEc-Cc
Confidence 99999999998866 7999999999887 99999999999999986432 1334444 67
Q ss_pred CCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 162 SGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 162 ~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
...|.+++|+| +.+.+++++-|++|++|.+.+..+..++++|. ..|+|+.|.+-+|..+|++|+.|.+|+
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceEE
Confidence 88999999999 67899999999999999999999999999887 669999998777778999999999999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+||..+. .+++++.+|...|..+.|+|.-.+|++|+.||+|+||+..+-++..++.-. ...|+||+-.+.+..++.|.
T Consensus 211 vWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 211 VWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred EeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEec
Confidence 9999994 469999999999999999999999999999999999999998888777765 78999999999888888887
Q ss_pred CCCeEEEEeCC----------CCceeeE-------Eeec---------------------cccceeEEEeeecCCcceee
Q 014114 321 LDSYLRFWDIK----------TRQLLSA-------VFLK---------------------QHLNEVVFDSAFADKEVANA 362 (430)
Q Consensus 321 ~d~~v~iwd~~----------~~~~~~~-------~~~~---------------------~~~~~~i~~~~~s~~g~~~~ 362 (430)
..|.|.+ .+- +|+.+.. ..+. +..+-....++-+|+|++++
T Consensus 289 Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~ 367 (794)
T KOG0276|consen 289 DEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVV 367 (794)
T ss_pred cCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEE
Confidence 7775543 221 1211111 0000 00011124567899999988
Q ss_pred ecCCCcEEEecCCC
Q 014114 363 AADAPMLEIQNGND 376 (430)
Q Consensus 363 ~~~d~~v~vw~~~~ 376 (430)
++.||.-.||..-.
T Consensus 368 VcgdGEyiIyTala 381 (794)
T KOG0276|consen 368 VCGDGEYIIYTALA 381 (794)
T ss_pred EecCccEEEEEeee
Confidence 88999988887544
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=219.89 Aligned_cols=270 Identities=16% Similarity=0.185 Sum_probs=224.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+.|..|.+|+..+.. +-...+.+|.++ ++.+.+ .+|+..|++++.|.+|+.||.++|+.+..+++|
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdc----eN~~~lkgHsgA--VM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h 131 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDC----ENFWVLKGHSGA--VMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH 131 (338)
T ss_pred CeEeecCCcceEEEEeccccc----cceeeeccccce--eEeeee--ccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence 458999999999999987632 122345578887 677766 778889999999999999999999999999887
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. +-+..+. +... +...+.+++.|+++++||+.... .++.+. ..-.++++.|...+
T Consensus 132 ~--------~~vNs~~--p~rr-----g~~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 132 T--------SFVNSLD--PSRR-----GPQLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTS 186 (338)
T ss_pred c--------ceeeecC--cccc-----CCeEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEecccc
Confidence 6 2333333 2111 33478888999999999998654 333332 24578999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC---CCcce
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRRPV 251 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~ 251 (430)
..+.+|+-|+.|++||++.....+.+.+|. +.|+.+.. ++++.++.+-+.|.++++||++. .++++
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsl--s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSL--SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred cceeeccccCceeeeccccCcceEEeeccc---------CceeeEEe--ccCCCccccccccceEEEEEecccCCCCceE
Confidence 999999999999999999999999999987 77999999 89999999999999999999985 23446
Q ss_pred EEeeecC----CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 014114 252 MSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 252 ~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i 327 (430)
..+.+|. ......+|+|+++.+.+|+.|..+++||......++.+.+| .+.|++++|+|..++|.+++.|.+|++
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence 7777653 24556789999999999999999999999888999999999 999999999999999999999999987
Q ss_pred Ee
Q 014114 328 WD 329 (430)
Q Consensus 328 wd 329 (430)
=.
T Consensus 335 ge 336 (338)
T KOG0265|consen 335 GE 336 (338)
T ss_pred ec
Confidence 44
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8e-32 Score=225.30 Aligned_cols=275 Identities=15% Similarity=0.221 Sum_probs=224.2
Q ss_pred CceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
+++|++|+.||.++|||. .|+....+.+|. +++..+.++.... ....|++++.|.++.+|..+...
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght--------~~ik~v~~v~~n~-----~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHT--------GPIKSVAWVIKNS-----SSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCC--------cceeeeEEEecCC-----ccceEEEecCCceEEEEEecCch
Confidence 468999999999999997 799988888866 6788777777655 34579999999999999887554
Q ss_pred ccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-------------------------ceeee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-------------------------EKIWT 199 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------------------~~~~~ 199 (430)
... ..+..-. .|...|.+++..+++..+++|+.|..|.+|+..+. .++..
T Consensus 181 ~~~----~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 181 NKV----KALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhh----hHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 311 1111111 78899999999999999999999999999993221 11222
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
+.+ |...|.++.| + +...+++++.|.+|+.||+.++.. ...+.. ..++.++.++|..++|++|+.|
T Consensus 256 l~G---------Ht~~Vs~V~w--~-d~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 256 LEG---------HTEPVSSVVW--S-DATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ecc---------cccceeeEEE--c-CCCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccceeeecCCC
Confidence 233 4578999999 4 477899999999999999999774 555544 4789999999999999999999
Q ss_pred CCEEEEEccCCe---EEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-eeeEEeeccccceeEEEeee
Q 014114 280 GDLASVDIRTGK---LLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 280 g~v~iwd~~~~~---~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~i~~~~~ 354 (430)
..|++||.+++. ..+.|.+| ...|.++.|+|.. .+|++++.|+++++||+++-+ ++.. +.+| +..|.++.|
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--I~~h-~DKvl~vdW 397 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--IAGH-NDKVLSVDW 397 (423)
T ss_pred CceeecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--eccC-CceEEEEec
Confidence 999999999764 56788898 8899999999976 458999999999999999887 8887 6778 555799999
Q ss_pred cCCcceeeecCCCcEEEecCCC
Q 014114 355 ADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 355 s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+..+.+++|+.|..|+|+....
T Consensus 398 ~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 398 NEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cCCceEEeccCcceEEEecccc
Confidence 9888889999999999987654
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-31 Score=223.19 Aligned_cols=282 Identities=14% Similarity=0.122 Sum_probs=224.8
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
+..++||+.||.+++||..+ +...++.+|.+++..+++-.. .+....+++++.|.++++|.++.++.......
T Consensus 115 ~~~IltgsYDg~~riWd~~G------k~~~~~~Ght~~ik~v~~v~~-n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG------KSIKTIVGHTGPIKSVAWVIK-NSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred CceEEEeecCCeeEEEecCC------ceEEEEecCCcceeeeEEEec-CCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 36799999999999999998 688899999998764443331 33344799999999999999987765433221
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc-----------------ccCCcceeeE
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-----------------AESSCSTVKS 156 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------~~~~~~~i~~ 156 (430)
. ..+|...|.++...... ..+++++.|..+.||+.+..... ......++ +
T Consensus 188 ~----~~GHk~~V~sVsv~~sg--------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-v 254 (423)
T KOG0313|consen 188 V----CRGHKRSVDSVSVDSSG--------TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-V 254 (423)
T ss_pred H----hcccccceeEEEecCCC--------CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-E
Confidence 1 01455788887776644 49999999999999994333221 01111122 2
Q ss_pred EeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC
Q 014114 157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (430)
--..|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+... ..++++.+ .|..++|++|+.|
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~--~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISY--SPLSKLLASGSSD 321 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeec--ccccceeeecCCC
Confidence 2336889999999997 778999999999999999999988877764 55889999 7899999999999
Q ss_pred CcEEEEECCCCC--cceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCe-EEeEEeccccCcEEEEEEcCC
Q 014114 237 HQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 237 g~i~~wd~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~s~~ 312 (430)
..|++||.+++. ...+.+.+|...|.++.|+|.. ..|++|+.|+++++||+++.+ +++.+.+| ...|.++.|+ +
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN-E 399 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc-C
Confidence 999999999754 3457788999999999999965 567889999999999999887 89999998 9999999996 4
Q ss_pred CCEEEEEeCCCeEEEEeC
Q 014114 313 LPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~ 330 (430)
+..+++|+.|++|+|+.-
T Consensus 400 ~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CceEEeccCcceEEEecc
Confidence 558999999999999964
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=233.39 Aligned_cols=273 Identities=14% Similarity=0.199 Sum_probs=222.3
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++-+++ ..+++|..|.+|+|||.++..++..+.+|+ +.+.|+.+-. ..+++|+.|.
T Consensus 200 VYClQYDD----~kiVSGlrDnTikiWD~n~~~c~~~L~GHt--------GSVLCLqyd~----------rviisGSSDs 257 (499)
T KOG0281|consen 200 VYCLQYDD----EKIVSGLRDNTIKIWDKNSLECLKILTGHT--------GSVLCLQYDE----------RVIVSGSSDS 257 (499)
T ss_pred eEEEEecc----hhhhcccccCceEEeccccHHHHHhhhcCC--------CcEEeeeccc----------eEEEecCCCc
Confidence 44555533 369999999999999999999999998876 7898888743 4899999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eeeecCCCCCCCCc
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGI 210 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~ 210 (430)
++.|||+.... .++.+ +.|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+|.
T Consensus 258 TvrvWDv~tge--------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr------ 320 (499)
T KOG0281|consen 258 TVRVWDVNTGE--------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------ 320 (499)
T ss_pred eEEEEeccCCc--------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh------
Confidence 99999998655 33332 2567788999996 57999999999999999976542 23455554
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
..|+.+.| +.+++++++.|.+|++|++.+.+ .++.+.+|...|.|+.+ .++++++|+.|.+|++||+..|
T Consensus 321 ---AaVNvVdf----d~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 321 ---AAVNVVDF----DDKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred ---hheeeecc----ccceEEEecCCceEEEEecccee-eehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc
Confidence 66899999 67799999999999999999976 49999999999999987 5889999999999999999999
Q ss_pred eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE-------eeccccceeEEEeeecCCcceeee
Q 014114 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV-------FLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~~~~i~~~~~s~~g~~~~~ 363 (430)
.++..+.+| +.-|.++.| +.+.+++|+.||.|+|||+..+...... .+..| .+.|+.+.|.. -++++.
T Consensus 391 ~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD~-fqIvss 465 (499)
T KOG0281|consen 391 ACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFDE-FQIISS 465 (499)
T ss_pred HHHHHHhch-HHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeecc-eEEEec
Confidence 999999999 899999999 7778999999999999999876433110 13345 33468888853 334889
Q ss_pred cCCCcEEEecCCCCCCc
Q 014114 364 ADAPMLEIQNGNDTQED 380 (430)
Q Consensus 364 ~~d~~v~vw~~~~~~~~ 380 (430)
+.|.+|.|||..+....
T Consensus 466 sHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGPPS 482 (499)
T ss_pred cCCCeEEEEEcCCCCcc
Confidence 99999999998775443
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=225.32 Aligned_cols=280 Identities=15% Similarity=0.247 Sum_probs=243.1
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|||+||++|+.||.|.+||..+|+....++-.....|.-.++++.|+.+..... .+++|+.||.|+||.+.
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--------MlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--------MLASGSQDGKIKVWRIE 293 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------HhhccCcCCcEEEEEEe
Confidence 8899999999999999999999999888877766666667778999999877444 99999999999999998
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
.+. .++.|+-.|...|+|+.|+.++..+++++.|.++++.-+.+|+++..+++|. ..|+...|
T Consensus 294 tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------Syvn~a~f 356 (508)
T KOG0275|consen 294 TGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------SYVNEATF 356 (508)
T ss_pred cch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc---------ccccceEE
Confidence 754 7778887889999999999999999999999999999999999999999986 78999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--cCCCeEEEEeeCC-CCEEEEEcCCCCEEEEEccCCeEEeEEec
Q 014114 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 298 (430)
.++|..+++++.||+|++|+..+.++ +.+++. ...+|.++-.-|. ...++++...++|.|.++ .|+.++.+..
T Consensus 357 --t~dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsS 432 (508)
T KOG0275|consen 357 --TDDGHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSS 432 (508)
T ss_pred --cCCCCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeecc
Confidence 89999999999999999999998775 666654 3457888877664 468888989999999998 6888888864
Q ss_pred c--ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEec
Q 014114 299 K--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 299 ~--~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~ 373 (430)
. ..+...+.+.+|.|.++.+.++|+.++.|.+.+|++-.. +.-|... +..++-+|.... ++-+.||.+++|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t--l~VhEkd-vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT--LPVHEKD-VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee--eeccccc-ccccccCcccchhhhhcccchhhhcC
Confidence 2 245677778999999999999999999999999999888 5556444 588999998888 9999999999995
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=226.58 Aligned_cols=291 Identities=18% Similarity=0.150 Sum_probs=231.1
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce---eeeeeecCCCCCCCCCCceEEEEeeccCcc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
..+.+..|...+..+.| +++|+|||+++.|.+..||++..... ..++.+|. .+|.-+.|.+..+
T Consensus 216 t~qil~~htdEVWfl~F----S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--------~~V~yi~wSPDdr- 282 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQF----SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--------QPVSYIMWSPDDR- 282 (519)
T ss_pred hhhhHhhCCCcEEEEEE----cCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--------CceEEEEECCCCC-
Confidence 34566778888666666 55899999999999999999865443 44444443 6888888877544
Q ss_pred ccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 014114 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 197 (430)
++++|+.+-.+.+||+..+. ....|.-.++..+.+.+|.|++..+++|+.|+++..||+... .+
T Consensus 283 -------yLlaCg~~e~~~lwDv~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~ 346 (519)
T KOG0293|consen 283 -------YLLACGFDEVLSLWDVDTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-IL 346 (519)
T ss_pred -------eEEecCchHheeeccCCcch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hh
Confidence 99999999999999987654 333444345678999999999999999999999999998643 33
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
...++... ..|.+++. .+||+++++.+.|..|++|+...... ...+ ....+|++++.|.+++++++.-
T Consensus 347 ~~W~gvr~--------~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~li-se~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 347 GNWEGVRD--------PKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVD-RGLI-SEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred hccccccc--------ceeEEEEE--cCCCcEEEEEecccceeeechhhhhh-hccc-cccCceeEEEEcCCCcEEEEEc
Confidence 33333221 34888998 89999999999999999999886332 3233 3357999999999999999999
Q ss_pred CCCCEEEEEccCCeEEeEEeccccCc--EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeee
Q 014114 278 GSGDLASVDIRTGKLLGCFIGKCSGS--IRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~~~~~--v~~i~~s~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 354 (430)
.+..+++||++..+.+..+.+| ... +-.-+|-- +..++++|++|+.|+||+..+++++.. +.||... |.+++|
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Gh-kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~--LsGHs~~-vNcVsw 490 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGH-KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV--LSGHSKT-VNCVSW 490 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcc-cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe--ecCCcce-eeEEec
Confidence 9999999999988889999888 433 33334543 447999999999999999999999999 8899765 599999
Q ss_pred cCCcce--eeecCCCcEEEecCCC
Q 014114 355 ADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 355 s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+|.... +++++||+|+||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 998887 8999999999998764
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-30 Score=229.67 Aligned_cols=268 Identities=18% Similarity=0.250 Sum_probs=222.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++.+|.|++|++..+ .....+..|...+ ..+.+ .|++++|++++.||.|.+|++.+++.+..+..+
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~~~i--~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 92 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHTGPV--RDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92 (289)
T ss_pred CEEEEeecCcEEEEEEeeCC-----CcEEEEecCCcce--eEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEEecc
Confidence 56888889999999999875 4556666677664 34455 566789999999999999999887777776653
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..+.++.+.+... .+++++.+|.+.+|++.... .+..+. .+...+.+++|+|++
T Consensus 93 ~--------~~i~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~ 147 (289)
T cd00200 93 T--------SYVSSVAFSPDGR--------ILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG 147 (289)
T ss_pred C--------CcEEEEEEcCCCC--------EEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence 3 4688888776433 77777779999999986322 333333 466789999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
.++++++.++.|++||+.+++.+..+..+. ..+.++.| +|+++.+++++.++.|++||++.++ .+..+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~ 215 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL 215 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEE--CCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence 999988889999999999888877776543 56899999 8899899999999999999998755 46777
Q ss_pred eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
..|...+.+++|+|++.++++++.++.|++||+.+++.+..+..| ...|.+++|+|++.+|++++.|+.|++|+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 788889999999999888888888999999999999999888887 88999999999999999999999999996
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=207.81 Aligned_cols=291 Identities=13% Similarity=0.119 Sum_probs=222.9
Q ss_pred heecCCCCcceEEEEeccCCCCC-CceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
.+.+.+|.+.+..+++ +|- |..||+++.|..|+||+...+........ .. .++...|..++|.+...
T Consensus 7 ~~~~~gh~~r~W~~aw----hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v-ld---~~hkrsVRsvAwsp~g~---- 74 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAW----HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV-LD---DGHKRSVRSVAWSPHGR---- 74 (312)
T ss_pred EEeecCCCCcEEEEEe----ccCCceEEEeecCCceEEEEecCCCCcEEEEEe-cc---ccchheeeeeeecCCCc----
Confidence 4566778876545544 555 77999999999999999874333222111 11 14557888888877555
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC---cee
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC---EKI 197 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~ 197 (430)
+|++++.|.++.||.-.... -..+.... .|...|.|++|+++|++||+++.|..|-+|.+..+ +++
T Consensus 75 ----~La~aSFD~t~~Iw~k~~~e------fecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 75 ----YLASASFDATVVIWKKEDGE------FECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred ----EEEEeeccceEEEeecCCCc------eeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 99999999999999754211 12333333 57889999999999999999999999999998743 466
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC--CCcceEEeeecCCCeEEEEeeCCCCEEEE
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 275 (430)
..++.|. .-|..+.| +|...+|++++.|.+|++|+-.. .-.++..+.+|+..|.+++|++.|..|++
T Consensus 144 aVL~~Ht---------qDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 144 AVLQEHT---------QDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred eeecccc---------ccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 7777776 55888999 78899999999999999998763 23458899999999999999999999999
Q ss_pred EcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeeEEeeccccceeE
Q 014114 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR------QLLSAVFLKQHLNEVV 349 (430)
Q Consensus 276 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~i 349 (430)
++.|++|+||-.. ..+...|...++.+.|. ...|++++.|+.|++|.-... +.+... ...|.. -|
T Consensus 213 ~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~-dV 283 (312)
T KOG0645|consen 213 CSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEV-DV 283 (312)
T ss_pred ecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hccccc-cc
Confidence 9999999999876 33444457899999997 458999999999999976542 112211 234533 47
Q ss_pred EEeeecC--CcceeeecCCCcEEEecCC
Q 014114 350 FDSAFAD--KEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 350 ~~~~~s~--~g~~~~~~~d~~v~vw~~~ 375 (430)
+++.|+| .++++++++||.+++|.+.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999 4455999999999999763
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-31 Score=244.48 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=240.8
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+-.++| +|..++++++--.|.|++||+.-+.++..+..|. ++|.++.+.+.++ .+++|+.|-
T Consensus 12 vKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--------GpVRgv~FH~~qp--------lFVSGGDDy 73 (1202)
T KOG0292|consen 12 VKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--------GPVRGVDFHPTQP--------LFVSGGDDY 73 (1202)
T ss_pred ccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--------CccceeeecCCCC--------eEEecCCcc
Confidence 556777 8889999999999999999999999988887754 7999999999877 999999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.|+||+...... +.. -..|-..|..+.|++.-.+|++++.|.+|+||++.++.++..+.+|.
T Consensus 74 kIkVWnYk~rrc--------lft-L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn--------- 135 (1202)
T KOG0292|consen 74 KIKVWNYKTRRC--------LFT-LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN--------- 135 (1202)
T ss_pred EEEEEeccccee--------hhh-hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc---------
Confidence 999999875331 111 23577889999999999999999999999999999999999999986
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC----------------------------cceEEeeecCCCeEEEE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----------------------------RPVMSFDFRETPIKAVA 265 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----------------------------~~~~~~~~~~~~i~~~~ 265 (430)
..|.|..| +|....+++++.|.+|++||+...+ -....+.+|...|.-++
T Consensus 136 HYVMcAqF--hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 136 HYVMCAQF--HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred eEEEeecc--CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 78999999 7889999999999999999985311 01245678999999999
Q ss_pred eeCCCCEEEEEcCCCCEEEEEccCCe--EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecc
Q 014114 266 EEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 266 ~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 343 (430)
|+|.-.+|++|+.|..|++|.+...+ .+-+..+| ...|.++-|+|...++++.|+|++|+|||+...+.++++ +.
T Consensus 214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf--rr 290 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF--RR 290 (1202)
T ss_pred ecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccceeee--ec
Confidence 99999999999999999999987554 35567888 999999999999999999999999999999999999985 32
Q ss_pred ccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 344 HLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 344 ~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
. +...+.++-+|...+++++.|+-+.||...
T Consensus 291 e-ndRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 291 E-NDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred c-CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 2 344699999999999888888888887765
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=222.15 Aligned_cols=243 Identities=16% Similarity=0.221 Sum_probs=219.1
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEe
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
+|.+.|.|+.+-+... .|++++.|+++.|||++. +.+++--..|-..|..+++++.-.|++++
T Consensus 149 gHlgWVr~vavdP~n~--------wf~tgs~DrtikIwDlat---------g~LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNE--------WFATGSADRTIKIWDLAT---------GQLKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hccceEEEEeeCCCce--------eEEecCCCceeEEEEccc---------CeEEEeecchhheeeeeeecccCceEEEe
Confidence 5668898988876444 899999999999999986 34555555677889999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC
Q 014114 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 181 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 260 (430)
+.|+.|+.||++..+.++.+.+|- ..|.+++. .|.-..|++|+.|.++++||+++.. .+..+.+|..+
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHl---------S~V~~L~l--hPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~ 279 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHL---------SGVYCLDL--HPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNP 279 (460)
T ss_pred cCCCeeEEEechhhhhHHHhcccc---------ceeEEEec--cccceeEEecCCcceEEEeeecccc-eEEEecCCCCc
Confidence 999999999999999999998876 77999999 7888999999999999999999954 59999999999
Q ss_pred eEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEe
Q 014114 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 340 (430)
|.++.+.|-...+++|+.|++|++||++.++...++..| ...|++++.+|....+++++.|. |+-|++..|..++.
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n-- 355 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN-- 355 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc--
Confidence 999999988889999999999999999999999999887 99999999999999999999886 99999999999998
Q ss_pred eccccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 341 ~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
+.+| ..++.+++.+.||-+++|++.|.+.+||-...
T Consensus 356 lsgh-~~iintl~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 356 LSGH-NAIINTLSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cccc-cceeeeeeeccCceEEEcCCceEEEEEecCcC
Confidence 7777 66789999999999999999999999997653
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-31 Score=237.59 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=237.7
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++..+..+.|++|+..+. +.+.++... .+++.+| -|.+.++++|...|.+.+||+.....+..++.|.
T Consensus 387 ~~~Sga~~SikiWn~~t~-----kciRTi~~~----y~l~~~F--vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd- 454 (888)
T KOG0306|consen 387 LLASGAGESIKIWNRDTL-----KCIRTITCG----YILASKF--VPGDRYIVLGTKNGELQVFDLASASLVETIRAHD- 454 (888)
T ss_pred eeeecCCCcEEEEEccCc-----ceeEEeccc----cEEEEEe--cCCCceEEEeccCCceEEEEeehhhhhhhhhccc-
Confidence 444556789999999976 777777543 5788888 8888999999999999999999999888887754
Q ss_pred CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe---eccCCceEEEEEcCC
Q 014114 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVDIS 173 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~~~ 173 (430)
+.+-.+...+.+. .+++++.|.++++|+........+...+.+.+-. +.....|.|+++||+
T Consensus 455 -------gaIWsi~~~pD~~--------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 455 -------GAIWSISLSPDNK--------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred -------cceeeeeecCCCC--------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 6777888777555 8999999999999998776553233322222211 123478999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
+.+|+++--|++|++|-+.+.+....+.+|. -+|.|+.. +||++++++|+.|..|++|-+.-+.+ ...
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDI--S~DSklivTgSADKnVKiWGLdFGDC-HKS 587 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDI--SPDSKLIVTGSADKNVKIWGLDFGDC-HKS 587 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccc---------cceeEEec--cCCcCeEEeccCCCceEEeccccchh-hhh
Confidence 9999999999999999999999989999987 67999999 89999999999999999999998775 888
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+-+|...|.++.|-|...++.+++.|+.|+-||-...+.++++.+| ...|++++.+|+|.++++++.|.+|++|....
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999999999999999999 88999999999999999999999999998654
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-31 Score=211.28 Aligned_cols=293 Identities=15% Similarity=0.153 Sum_probs=239.3
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
.+-.+|..++--++++. -.|+|-+|++++.||.-.+-+-.+|.-+.++.+|. +.|-...+..+..
T Consensus 8 l~c~ghtrpvvdl~~s~-itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk--------gavw~~~l~~na~------ 72 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSP-ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK--------GAVWSATLNKNAT------ 72 (334)
T ss_pred eEEcCCCcceeEEeccC-CCCCceEEEEeccCCCchhccCCCCCcEEeeeccC--------cceeeeecCchhh------
Confidence 34456777765666654 36789999999999999999999999999999876 4555544444333
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeec
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAK 201 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~ 201 (430)
.-++++.|-+.+||+.-.... +..+.|...|..++|+.+.++|++|+.+..+++||++..+ ....+.
T Consensus 73 --~aasaaadftakvw~a~tgde----------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 73 --RAASAAADFTAKVWDAVTGDE----------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred --hhhhhcccchhhhhhhhhhhh----------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 667788888999998654432 2344577889999999999999999999999999997644 334455
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 281 (430)
+|. ..|..+.|+ ...+.|++++.|++|++||.+++.. ++.+.. +.+|+++.++++|++|.++ ..+.
T Consensus 141 ght---------g~Ir~v~wc--~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~-~s~VtSlEvs~dG~ilTia-~gss 206 (334)
T KOG0278|consen 141 GHT---------GGIRTVLWC--HEDKCILSSADDKTVRLWDHRTGTE-VQSLEF-NSPVTSLEVSQDGRILTIA-YGSS 206 (334)
T ss_pred CCC---------CcceeEEEe--ccCceEEeeccCCceEEEEeccCcE-EEEEec-CCCCcceeeccCCCEEEEe-cCce
Confidence 544 779999994 5667888889999999999999875 666665 5789999999999877766 5667
Q ss_pred EEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-
Q 014114 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~- 360 (430)
|.+||..+..++..++. ...|.+..++|+...+++|++|..++.||..+++.+..+ ..+|.+. |.++.|+|||..
T Consensus 207 V~Fwdaksf~~lKs~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gp-VhcVrFSPdGE~y 282 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGP-VHCVRFSPDGELY 282 (334)
T ss_pred eEEeccccccceeeccC--ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCc-eEEEEECCCCcee
Confidence 99999999999988887 578999999999999999999999999999999999873 5788655 699999999999
Q ss_pred eeecCCCcEEEecCCCCCCc
Q 014114 361 NAAADAPMLEIQNGNDTQED 380 (430)
Q Consensus 361 ~~~~~d~~v~vw~~~~~~~~ 380 (430)
++++.||+|++|.....+..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998876543
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6e-32 Score=232.80 Aligned_cols=269 Identities=16% Similarity=0.198 Sum_probs=221.8
Q ss_pred ceEeecCCCcEEEEEecC-ccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 16 RALTFDSLGLIKVIEARG-EDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.|++++.|+.|+||++.. + .++.+|.+|..++ -+++| +++|..+++++.|+.|++||+++|+++..+..-
T Consensus 229 LlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~V--rd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~ 299 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPV--RDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD 299 (503)
T ss_pred EEEecCCCceEEEEEEecCc-----ceehhhhcchhhh--hhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence 378999999999999976 4 7889999999995 45555 667788999999999999999999999988762
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
..+.|+.+.+.. .+.+++|+.|+.|..||+.... .++-|+ .|-+.|..+.|-+++
T Consensus 300 ---------~~~~cvkf~pd~-------~n~fl~G~sd~ki~~wDiRs~k--------vvqeYd-~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 300 ---------KVPTCVKFHPDN-------QNIFLVGGSDKKIRQWDIRSGK--------VVQEYD-RHLGAILDITFVDEG 354 (503)
T ss_pred ---------CCceeeecCCCC-------CcEEEEecCCCcEEEEeccchH--------HHHHHH-hhhhheeeeEEccCC
Confidence 245667766543 2599999999999999998654 333444 467899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc--ceE
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVM 252 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~ 252 (430)
.++++.+.|+.+++|+......+..+..+.. -...++.. +|++.+++.=+.|..|.+|.+...-+ ...
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~--------hsmP~~~~--~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEM--------HTMPCLTL--HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhh--------ccCcceec--CCCCCeehhhccCceEEEEecccccccCHhh
Confidence 9999999999999999988766654433321 23566777 89999999999999999998764221 234
Q ss_pred EeeecC--CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 014114 253 SFDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD 329 (430)
Q Consensus 253 ~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd 329 (430)
.+.+|. +.-..+.|||||.+|++|+.||.+.+||.++-+++..+++| .+++..+.|+|.. ..+|+++.||.|++||
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 667775 34566889999999999999999999999999999999998 9999999999965 5799999999999996
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-30 Score=240.27 Aligned_cols=246 Identities=19% Similarity=0.301 Sum_probs=211.5
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
...+.++.+..... .+++++.++.+.+|....... ..++.. ..|...|.+++|+|++.++++++.
T Consensus 159 ~~sv~~~~fs~~g~--------~l~~~~~~~~i~~~~~~~~~~------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGR--------ALAAASSDGLIRIWKLEGIKS------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCCCC--------eEEEccCCCcEEEeecccccc------hhhccc-cccccceeeeEECCCCcEEEEecC
Confidence 35677777766444 899999999999999843331 122222 467789999999999999999999
Q ss_pred CCeEEEEEC-CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 183 GVEVNVWDL-DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 183 dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
|++|++||+ ..+..++++.+|. ..|++++| +|+++++++|+.|++|++||+++++ ++..+.+|...|
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~---------~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~i 291 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHS---------TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGI 291 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCC---------CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCce
Confidence 999999999 5568889999886 78999999 8999999999999999999999965 599999999999
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCe--EEeEEeccccC-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~-~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
++++|++++++|++++.|+.|+|||+.++. ++..+..+... ++++++|+|++.+|+++..|+.+++||+..+..+..
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 999999999999999999999999999999 56777776333 599999999999999999999999999999999888
Q ss_pred Eeeccccce--eEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 339 VFLKQHLNE--VVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 339 ~~~~~~~~~--~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
..+|... .+.+..+++.+.+ ++++.|+.|.+|+....
T Consensus 372 --~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 372 --YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred --ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 5566554 4567777889999 99999999999999863
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5e-30 Score=204.40 Aligned_cols=279 Identities=12% Similarity=0.097 Sum_probs=225.7
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..+.+|...+ -.++| ..+|..|++|+.|+++.+|++...+....... .++.+.+..+.|++.+.
T Consensus 14 r~~~~~~~~v--~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~------~gh~~svdql~w~~~~~------ 77 (313)
T KOG1407|consen 14 RELQGHVQKV--HSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELVY------RGHTDSVDQLCWDPKHP------ 77 (313)
T ss_pred HHhhhhhhcc--eEEEE--cccCceeeecccCCceEEEEecchhhhhhhcc------cCCCcchhhheeCCCCC------
Confidence 3445566664 44444 55788999999999999999987755544433 24456777888888765
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecC
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 202 (430)
..+++++.|.++++|++..... +-.+...+.=.-+.|+|++++++++..|..|...|.++.+.+...+.
T Consensus 78 -d~~atas~dk~ir~wd~r~~k~----------~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 78 -DLFATASGDKTIRIWDIRSGKC----------TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred -cceEEecCCceEEEEEeccCcE----------EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 4899999999999999876542 11223344445678999999999999999999999998777665543
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
. -.++-+.| +.++++|+.....|.|.|......+ ++..+++|.....||.|+|+|++||+|+.|..+
T Consensus 147 ~----------~e~ne~~w--~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 147 K----------FEVNEISW--NNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred c----------ceeeeeee--cCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeecccccee
Confidence 2 44777888 5667777777778999999988744 799999999999999999999999999999999
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~ 361 (430)
.+||+...-+++.+.-+ .-+|+.+.||.+|++||+|++|..|-|=++++|..+..+.. .+..+.++|+|...+ +
T Consensus 214 SLWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~----~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 214 SLWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC----EGPTFTVAWHPKRPLLA 288 (313)
T ss_pred eccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec----cCCceeEEecCCCceee
Confidence 99999988899999887 99999999999999999999999999999999999998753 333588899999988 5
Q ss_pred eecCC
Q 014114 362 AAADA 366 (430)
Q Consensus 362 ~~~~d 366 (430)
.+.+|
T Consensus 289 yA~dd 293 (313)
T KOG1407|consen 289 YACDD 293 (313)
T ss_pred EEecC
Confidence 55544
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=2.5e-30 Score=206.79 Aligned_cols=287 Identities=15% Similarity=0.194 Sum_probs=234.4
Q ss_pred ecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCC
Q 014114 44 RWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
.+++|+.+++-+.+ +-+|++|.+++.|.++.||-..+|+.+.++.+|. +.|-|+.+-....
T Consensus 5 ~l~GHERplTqiKy----N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt--------GavW~~Did~~s~------- 65 (327)
T KOG0643|consen 5 LLQGHERPLTQIKY----NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT--------GAVWCCDIDWDSK------- 65 (327)
T ss_pred ccccCccccceEEe----cCCCcEEEEecCCCCceEEEecCCceeeeecCCC--------ceEEEEEecCCcc-------
Confidence 35678888555555 4478899999999999999988999999999976 6788777755444
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEec-----CCCeEEEEECCC-----
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-----KGVEVNVWDLDK----- 193 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~----- 193 (430)
.+++++.|.++++|++.... .+..|. .+.+|..+.|++++++++... ..+.|.++|++.
T Consensus 66 -~liTGSAD~t~kLWDv~tGk--------~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 66 -HLITGSADQTAKLWDVETGK--------QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred -eeeeccccceeEEEEcCCCc--------EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 99999999999999998654 555665 468899999999999988764 456799999983
Q ss_pred --CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCC
Q 014114 194 --CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF 271 (430)
Q Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 271 (430)
.+++..+..+. ..++.+-| .|-+.+|++|..||.|.+||+++++..+...+.|...|+.+.++++..
T Consensus 135 ~s~ep~~kI~t~~---------skit~a~W--g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 135 DSEEPYLKIPTPD---------SKITSALW--GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT 203 (327)
T ss_pred cccCceEEecCCc---------cceeeeee--cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc
Confidence 44566666554 56888899 899999999999999999999998877888889999999999999999
Q ss_pred EEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCe--EEEEeCCCC------------ceee
Q 014114 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY--LRFWDIKTR------------QLLS 337 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~--v~iwd~~~~------------~~~~ 337 (430)
++++++.|.+-++||..+.+++.++.. ..+|++.+++|....++.|+.... |--=+.+.| +.+.
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 999999999999999999999999988 689999999998877776653322 222222233 3344
Q ss_pred EEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
. +.+|.+. |++++|+|+|+. ++|+.||.|++.....
T Consensus 282 r--vkGHFGP-INsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 282 R--VKGHFGP-INSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred c--ccccccC-cceeEECCCCcccccCCCCceEEEEEecc
Confidence 4 6788766 599999999999 9999999999986654
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.5e-29 Score=203.39 Aligned_cols=288 Identities=15% Similarity=0.179 Sum_probs=224.8
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
.+.|....+. +.++.| +++|.+|++++.|.+|+|||..+++++.++.... -.+-.+++.....
T Consensus 7 ak~f~~~~~~--i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~skk--------yG~~~~~Fth~~~----- 69 (311)
T KOG1446|consen 7 AKVFRETNGK--INSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK--------YGVDLACFTHHSN----- 69 (311)
T ss_pred ccccccCCCc--eeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc--------ccccEEEEecCCc-----
Confidence 3455554444 666777 7789999999999999999999999999987633 1333444544333
Q ss_pred CCceEEEEcc--CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 122 RSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 122 ~~~~~~~~~~--~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.++.++. |.+|+..++... +.+|.|. .|...|.+++.+|-+..+++++.|++|++||++..++...
T Consensus 70 ---~~i~sStk~d~tIryLsl~dN--------kylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 70 ---TVIHSSTKEDDTIRYLSLHDN--------KYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred ---eEEEccCCCCCceEEEEeecC--------ceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 5666665 667777777643 3666665 7899999999999999999999999999999997776655
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC-CcceEEeeec---CCCeEEEEeeCCCCEEEE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~---~~~i~~~~~s~~~~~l~~ 275 (430)
+... .-..++| +|.|-++|++.....|++||++.. +.|...+... ....+.|.|||||++|+.
T Consensus 138 l~~~-----------~~pi~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 138 LNLS-----------GRPIAAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred EecC-----------CCcceeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 5442 2345688 899999999998889999999974 4466666543 568899999999999999
Q ss_pred EcCCCCEEEEEccCCeEEeEEeccccCc---EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEe
Q 014114 276 GNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 276 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~---v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~ 352 (430)
+...+.+++.|.-+|..+.++..+ ... --...|.||++++++|+.||+|.+|+++++..+.. +.+.....+.++
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs~~-~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~--~~~~~~~~~~~~ 281 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFSGY-PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV--LRGPNGGPVSCV 281 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEeec-cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE--ecCCCCCCcccc
Confidence 999999999999999999988876 322 25678999999999999999999999999999998 555445557899
Q ss_pred eecCCcceeeecCCCcEEEecCC
Q 014114 353 AFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 353 ~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
.|+|.-.. .++.+..+.+|-..
T Consensus 282 ~fnP~~~m-f~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 282 RFNPRYAM-FVSASSNLVFWLPD 303 (311)
T ss_pred ccCCceee-eeecCceEEEEecc
Confidence 99997555 33344577777554
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5e-31 Score=222.78 Aligned_cols=273 Identities=13% Similarity=0.099 Sum_probs=224.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++++.|.+..+|++... .. .++..++-+|..+| ..+.| +||..||++++.|..+.+||+.+|.+...+..
T Consensus 237 kyLAsaSkD~Taiiw~v~~d-~~-~kl~~tlvgh~~~V--~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~- 309 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYD-VH-FKLKKTLVGHSQPV--SYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS- 309 (519)
T ss_pred eeEeeccCCceEEEEEEecC-cc-eeeeeeeecccCce--EEEEE--CCCCCeEEecCchHheeeccCCcchhhhhccc-
Confidence 46899999999999998752 22 46677888898885 44555 67778999999999999999999998887754
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+.+..+.+.+|++... .+++|+.|+.+..|++... .+..|.......|.++++.++|
T Consensus 310 ------~~~~S~~sc~W~pDg~--------~~V~Gs~dr~i~~wdlDgn---------~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 310 ------GLGFSVSSCAWCPDGF--------RFVTGSPDRTIIMWDLDGN---------ILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred ------CcCCCcceeEEccCCc--------eeEecCCCCcEEEecCCcc---------hhhcccccccceeEEEEEcCCC
Confidence 2235677888888555 8999999999999998643 3456776666789999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
+++++.+.|..|++|+.++......+..+ .+|++... +.+++++++.-.+..+++||+... ..+..+
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~----------~~its~~i--S~d~k~~LvnL~~qei~LWDl~e~-~lv~kY 433 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEE----------QPITSFSI--SKDGKLALVNLQDQEIHLWDLEEN-KLVRKY 433 (519)
T ss_pred cEEEEEecccceeeechhhhhhhcccccc----------CceeEEEE--cCCCcEEEEEcccCeeEEeecchh-hHHHHh
Confidence 99999999999999999876655444433 56899888 899999999999999999999964 457788
Q ss_pred eecCCC--eEEEEee-CCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 014114 255 DFRETP--IKAVAEE-PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDI 330 (430)
Q Consensus 255 ~~~~~~--i~~~~~s-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~ 330 (430)
.+|... +..-+|. .+..++++|++|+.|+||+..+++++..+.+| ...|++++|+|.. .++|+|+.||+||||-.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 887653 3333453 34579999999999999999999999999999 9999999999965 57999999999999976
Q ss_pred C
Q 014114 331 K 331 (430)
Q Consensus 331 ~ 331 (430)
.
T Consensus 513 ~ 513 (519)
T KOG0293|consen 513 S 513 (519)
T ss_pred C
Confidence 5
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-29 Score=233.50 Aligned_cols=279 Identities=15% Similarity=0.157 Sum_probs=225.2
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-.++++--.|.|++||...+ .++..|.+|++++. .+.| +|.++++++|+.|-.|+||++.+.+++.++.+|
T Consensus 22 PwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVR--gv~F--H~~qplFVSGGDDykIkVWnYk~rrclftL~GH 92 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVR--GVDF--HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH 92 (1202)
T ss_pred CEEEEeecCceeeeehhhhh-----hHHhhhhccCCccc--eeee--cCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence 45889999999999999987 89999999999955 4555 788899999999999999999999999999886
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
- +.|..+.+...-+ -+++++.|.+|+||+..... .|.+.. .|...|.|..|+|..
T Consensus 93 l--------DYVRt~~FHheyP--------WIlSASDDQTIrIWNwqsr~--------~iavlt-GHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 93 L--------DYVRTVFFHHEYP--------WILSASDDQTIRIWNWQSRK--------CIAVLT-GHNHYVMCAQFHPTE 147 (1202)
T ss_pred c--------ceeEEeeccCCCc--------eEEEccCCCeEEEEeccCCc--------eEEEEe-cCceEEEeeccCCcc
Confidence 5 7888888877666 89999999999999987543 444444 688899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecC--------CCC--CCC----------CcccCcceeEeEEeeCCCCCEEEEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK--NSL----------GIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~--~~~----------~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (430)
.++++++-|.+|++||+..-+.-....+ ++. ..+ --.|...|+-++| +|.-.+|++|+
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf--hpTlpliVSG~ 225 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF--HPTLPLIVSGA 225 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe--cCCcceEEecC
Confidence 9999999999999999863211110000 000 000 0013356888999 78889999999
Q ss_pred CCCcEEEEECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC
Q 014114 235 NDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 235 ~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
.|..|++|.+...+. .+.+..+|...|.++-|+|...+|++.+.|+.|+|||+...+.+++|+-. ....+.++.+|..
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~l 304 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPEL 304 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCc
Confidence 999999999975331 24567889999999999999999999999999999999999999999876 7899999999999
Q ss_pred CEEEEEeCCCeEEEEeCC
Q 014114 314 PIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 314 ~~l~s~~~d~~v~iwd~~ 331 (430)
+++++|- |+-+.+|.++
T Consensus 305 NLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 305 NLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred ceeeeec-CCceEEEEEc
Confidence 8777764 4445556554
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=6.8e-30 Score=237.42 Aligned_cols=272 Identities=11% Similarity=0.162 Sum_probs=233.0
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhhee-cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVER-WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
...+++++.+.+|++|+...+ ..+.. +.+|.+.+..+++.. -+.+|++|+.|.+++|||..+|++...+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred cCeEEecCCCceeEEeecccc-----eEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 467899999999999999986 66666 999999987777764 34689999999999999999999999999
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+|. ..+.++.... ..+++|+.|.+++||++.... .+.+... |..+|.++..+
T Consensus 289 gh~--------stv~~~~~~~----------~~~~sgs~D~tVkVW~v~n~~--------~l~l~~~-h~~~V~~v~~~- 340 (537)
T KOG0274|consen 289 GHT--------SSVRCLTIDP----------FLLVSGSRDNTVKVWDVTNGA--------CLNLLRG-HTGPVNCVQLD- 340 (537)
T ss_pred CCC--------ceEEEEEccC----------ceEeeccCCceEEEEeccCcc--------eEEEecc-ccccEEEEEec-
Confidence 866 4565555533 377888999999999998433 4555554 88999999997
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
+.++++|+.|++|++||+.+++++..+.+|. .+|.++.+ .+. +.+++|+.|++|++||+++..+++.
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIV--DSE-NRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEe--cCc-ceEEeeeeccceEeecCCchhhhhh
Confidence 8899999999999999999999999999986 77999988 332 8999999999999999999735689
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.+.+|..-+..+.+ .+++|++++.|+.|++||..+++++..+.++|...|..+++. ...+++++.|+.+++||+++
T Consensus 408 tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99999988877765 567999999999999999999999999998437889998886 46789999999999999999
Q ss_pred CceeeEE
Q 014114 333 RQLLSAV 339 (430)
Q Consensus 333 ~~~~~~~ 339 (430)
+++...+
T Consensus 484 ~~~~~~l 490 (537)
T KOG0274|consen 484 GTLIRTL 490 (537)
T ss_pred Cchhhhh
Confidence 9998874
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=2.9e-29 Score=251.27 Aligned_cols=274 Identities=14% Similarity=0.139 Sum_probs=209.0
Q ss_pred cceEeecCCCcEEEEEecCccC---CcchhheecCCCCcceEEEEeccCCCC-CCceEEEEccCCeEEEeccCCCceeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDG---GVPKVVERWGDPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
-.++||+.||.|+||+...... ........+.. ... +..++| +| ++.+|++++.||.|+|||+.+++.+..
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~--v~~l~~--~~~~~~~las~~~Dg~v~lWd~~~~~~~~~ 570 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSK--LSGICW--NSYIKSQVASSNFEGVVQVWDVARSQLVTE 570 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCc--eeeEEe--ccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3588999999999999864100 00011122222 233 334444 32 467899999999999999998888887
Q ss_pred eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+..|. +.|.++.+.+.. +..|++++.||.+++|++.... .+..+. +...+.++.|
T Consensus 571 ~~~H~--------~~V~~l~~~p~~-------~~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~ 625 (793)
T PLN00181 571 MKEHE--------KRVWSIDYSSAD-------PTLLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQF 625 (793)
T ss_pred ecCCC--------CCEEEEEEcCCC-------CCEEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEE
Confidence 77654 678888886532 2389999999999999986432 233333 3467899999
Q ss_pred c-CCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC-
Q 014114 171 D-ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ- 247 (430)
Q Consensus 171 ~-~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~- 247 (430)
+ +++.+|++|+.||.|++||+.+.. .+..+..|. ..|.++.| . ++.+|++++.|++|++||++..
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~---------~~V~~v~f--~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS---------KTVSYVRF--V-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC---------CCEEEEEE--e-CCCEEEEEECCCEEEEEeCCCCc
Confidence 5 578999999999999999998765 345555554 67999999 3 6789999999999999999753
Q ss_pred ----CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe------------ccccCcEEEEEEcC
Q 014114 248 ----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------------GKCSGSIRSIARHP 311 (430)
Q Consensus 248 ----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------------~~~~~~v~~i~~s~ 311 (430)
..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+. .++...|.+++|+|
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 23577889999999999999999999999999999999987654433221 11256799999999
Q ss_pred CCCEEEEEeCCCeEEEEeC
Q 014114 312 TLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 312 ~~~~l~s~~~d~~v~iwd~ 330 (430)
++..|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=204.94 Aligned_cols=267 Identities=15% Similarity=0.204 Sum_probs=216.9
Q ss_pred cCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcc
Q 014114 73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS 152 (430)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~ 152 (430)
..|++.|.++...+-+..+..+. -.+.+..++|..... +.+++++.||.+++|++.... +
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e-------~~~~~a~GDGSLrl~d~~~~s-------~ 95 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHE-------NQVIAASGDGSLRLFDLTMPS-------K 95 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCc-------ceEEEEecCceEEEeccCCCC-------c
Confidence 45889999997666565555422 124677788876554 589999999999999955433 5
Q ss_pred eeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE
Q 014114 153 TVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
+|..|. +|...|.++.|++ ....+++++.|++|++|+...++.+.++.+|. ..|....|. +...+.++
T Consensus 96 Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~---------~~Iy~a~~s-p~~~nlfa 164 (311)
T KOG0277|consen 96 PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN---------SCIYQAAFS-PHIPNLFA 164 (311)
T ss_pred chhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc---------cEEEEEecC-CCCCCeEE
Confidence 888888 6889999999998 56677888999999999999999999998876 678999995 33678999
Q ss_pred EEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEEEEE
Q 014114 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 232 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~ 309 (430)
+++.|+.+++||++...+ ...+..|...|.++.|+. +.+.+++|+.|+.|++||++.. .++..+.+| .-.|+.+.|
T Consensus 165 s~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~ 242 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKF 242 (311)
T ss_pred EccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEec
Confidence 999999999999998765 344899999999999986 5578899999999999999875 468889898 999999999
Q ss_pred cCCC-CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc--eeeecCCCcEEEecC
Q 014114 310 HPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV--ANAAADAPMLEIQNG 374 (430)
Q Consensus 310 s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~~~~~~d~~v~vw~~ 374 (430)
||.. .+|++++.|-++||||.......... ...| .+-+..+.|++-.. ++..+.|+.++||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~-~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIET-VDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhh-hhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence 9965 68999999999999998855443331 3334 55679999998533 389999999999985
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.5e-30 Score=201.17 Aligned_cols=241 Identities=18% Similarity=0.243 Sum_probs=207.8
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
..+|..+.+.- ++++.++++.|.++++|+..... .|+.|. .|+..|..++.+.+...+++|+.
T Consensus 17 qgaV~avryN~--------dGnY~ltcGsdrtvrLWNp~rg~--------liktYs-ghG~EVlD~~~s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 17 QGAVRAVRYNV--------DGNYCLTCGSDRTVRLWNPLRGA--------LIKTYS-GHGHEVLDAALSSDNSKFASCGG 79 (307)
T ss_pred ccceEEEEEcc--------CCCEEEEcCCCceEEeecccccc--------eeeeec-CCCceeeeccccccccccccCCC
Confidence 35677666654 44599999999999999976433 556665 68899999999999999999999
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC-CcceEEeeecCCCe
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPI 261 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~i 261 (430)
|..|.+||+.+|+.++.+.+|. ..|+.+.| +.+...+++|+.|.++++||.++. ..|++.+......|
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~---------aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHL---------AQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred CceEEEEEcccCeeeeeccccc---------ceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 9999999999999999999987 77999999 788899999999999999999863 34788888888899
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
.++..+ +..|++|+.||+++.||++.|+....+-+| +|+++.|+++++.++.++.|+++++.|-.+|++++. .
T Consensus 149 ~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s--Y 221 (307)
T KOG0316|consen 149 SSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS--Y 221 (307)
T ss_pred eEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHH--h
Confidence 999886 558999999999999999999988777665 899999999999999999999999999999999998 6
Q ss_pred cccccee-EEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 342 KQHLNEV-VFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 342 ~~~~~~~-i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
.+|.+.. -...+++..... ++++.||.+.+||+.+..
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 7775443 356677777677 999999999999987644
No 60
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=227.35 Aligned_cols=354 Identities=14% Similarity=0.153 Sum_probs=253.9
Q ss_pred CCcccCCCCCCCcceEeecCCCcEEEEEecCccC-C-----------cchhh---eecCCCCcc--eEEEEeccCCCCCC
Q 014114 3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEDG-G-----------VPKVV---ERWGDPHSS--KCVLAASIDDSQND 65 (430)
Q Consensus 3 ~~~~~~~~~~p~~~l~t~~~dg~i~vw~~~~~~~-~-----------~~~~~---~~~~~~~~~--~~~~~~~~~~~p~g 65 (430)
||+...|.....--+++|..+|.|+|++..+-+- + +..+. ..+.+.... --++|+-| .|..
T Consensus 259 RTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~F--det~ 336 (1080)
T KOG1408|consen 259 RTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQF--DETT 336 (1080)
T ss_pred hccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEe--cCCC
Confidence 5777888888888889999999999999876420 0 00000 001111111 12567777 6666
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc---cCCceEEEEccCCeeEEEEeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS---SRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
+.|.+...|..|.|||+.+-+.+......- -|...|..+..++-.-.... -..+.|++|+.|++|++|++++
T Consensus 337 ~klscVYndhSlYvWDvrD~~kvgk~~s~l-----yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 337 DKLSCVYNDHSLYVWDVRDVNKVGKCSSML-----YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred ceEEEEEcCceEEEEeccccccccceeeee-----eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence 789999999999999998754443332200 01122333333221110000 1234799999999999999988
Q ss_pred eccccc--------------CCcceee--------EEee------ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 014114 143 TKVSAE--------------SSCSTVK--------SWNV------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 143 ~~~~~~--------------~~~~~i~--------~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 194 (430)
...... ..|+... +++- .....+.+++++|++++|++|..-|.+++|++...
T Consensus 412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 322100 0111111 1110 11245899999999999999999999999999998
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCC--CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEE--------
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-------- 264 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~-------- 264 (430)
+....++.|. ..|.|+.|. .| ..++|++++.|..|++||....-.++.++.+|...|+++
T Consensus 492 ~~~~~~eAHe---------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 492 EYTCFMEAHE---------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred hhhhheeccc---------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 8887888776 669999995 23 246899999999999999876554555555655555554
Q ss_pred -----------------------------------------EeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc--cc
Q 014114 265 -----------------------------------------AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CS 301 (430)
Q Consensus 265 -----------------------------------------~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~ 301 (430)
+..|..+++++++.|..|+|||+.+++..+.|++. |.
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence 44455567899999999999999999999999864 25
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+....+...|.|.||++.+.|+++.++|+.+|++++. .-|| ...|+.+.|.+|-+. ++++.||.|.||.++.
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--MTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhh--hcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 7788899999999999999999999999999999999 5678 455799999999999 9999999999999875
No 61
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=224.91 Aligned_cols=322 Identities=16% Similarity=0.169 Sum_probs=252.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++.|...|.++||++.++ +++.+|.++...+ .++.. +|--+.+|.|..+|+|.|+++..++.+.+++.-
T Consensus 173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~s~I--T~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFFSRI--TAIEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred eeEEEeecCCcEEEEEeccC-----cEEEEecccccce--eEecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence 57899999999999999998 9999999988764 44444 555668999999999999999999999998762
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc------------------------ccCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------AESS 150 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------------------------~~~~ 150 (430)
+ ++|..+.+-.... ..++++...|.+.+||++..... +.+.
T Consensus 244 ~--------g~VtslSFrtDG~-------p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 244 W--------GRVTSLSFRTDGN-------PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA 308 (910)
T ss_pred c--------cceeEEEeccCCC-------eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence 2 3566555543221 25555556666666666543220 2223
Q ss_pred cceeeEEeecc---------------------------------------------------------------------
Q 014114 151 CSTVKSWNVCA--------------------------------------------------------------------- 161 (430)
Q Consensus 151 ~~~i~~~~~~~--------------------------------------------------------------------- 161 (430)
|..+++|-...
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 33333332220
Q ss_pred -----------------------------------------------------------CCceEEEEEcCCCCEEEEecC
Q 014114 162 -----------------------------------------------------------SGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 162 -----------------------------------------------------------~~~i~~~~~~~~~~~l~~~~~ 182 (430)
...+++++.++.|++.+.|+.
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 014678888999999999999
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeE
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK 262 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 262 (430)
.|.|-+|++++|-....+... ..|...|+.++. +.-++.+++++.+|.+.+||..... ++..+.. ...+.
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~------~ah~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~ 538 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDS------PAHKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSIT 538 (910)
T ss_pred CCeEEEEEcccCeeecccccC------ccccCceeEEEe--cCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcc
Confidence 999999999998877776311 112367999998 6677889999999999999998743 4555544 35788
Q ss_pred EEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec
Q 014114 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 263 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 342 (430)
++.++.....++++..|-.|+++|..+.+.++.|.+| ...|++++|||||++|++++.|++|++||+.++.++-.+.
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-- 615 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-- 615 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--
Confidence 8888888889999999999999999999999999999 9999999999999999999999999999999999998863
Q ss_pred cccceeEEEeeecCCcce-eeecCC-CcEEEecCC
Q 014114 343 QHLNEVVFDSAFADKEVA-NAAADA-PMLEIQNGN 375 (430)
Q Consensus 343 ~~~~~~i~~~~~s~~g~~-~~~~~d-~~v~vw~~~ 375 (430)
.+.+++++.|+|+|.+ +++..| .-|.+|...
T Consensus 616 --vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 616 --VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred --cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 3555799999999999 777766 778999754
No 62
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-28 Score=199.52 Aligned_cols=274 Identities=15% Similarity=0.212 Sum_probs=215.9
Q ss_pred CcceEeecCCCcEEEEEecCccC-----Ccc--hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc
Q 014114 14 PLRALTFDSLGLIKVIEARGEDG-----GVP--KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
.|++++|+....|.-+++..... ..+ .....|..|.++++++|++. .|+|+|+.|-+|+|||+...+
T Consensus 1 ~m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 1 EMEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred CeeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchh
Confidence 37899999999888888764321 111 12455677889988888876 699999999999999999888
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.+..+-.|. +.|.++.++.+... ..|++|+.||.+.+|++..- ..+..+. .|.+.|+
T Consensus 75 qlg~ll~Ha--------gsitaL~F~~~~S~------shLlS~sdDG~i~iw~~~~W--------~~~~slK-~H~~~Vt 131 (362)
T KOG0294|consen 75 QLGILLSHA--------GSITALKFYPPLSK------SHLLSGSDDGHIIIWRVGSW--------ELLKSLK-AHKGQVT 131 (362)
T ss_pred hhcceeccc--------cceEEEEecCCcch------hheeeecCCCcEEEEEcCCe--------EEeeeec-ccccccc
Confidence 888877654 68999999876542 28999999999999997532 2333333 4667799
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
.++.+|.+++.++.+.|+.+++||+-+|+.-+.+.... ..+.+.| +|.|.+|+.+..+ .|-+|.+.+
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----------~at~v~w--~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----------KATLVSW--SPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC----------cceeeEE--cCCCCEEEEEecc-EEEEEeccc
Confidence 99999999999999999999999999988766665432 2445889 7999988888765 588998876
Q ss_pred CCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEE--cCCCCEEEEEeCCCe
Q 014114 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~s~~~d~~ 324 (430)
.. ....+.. ...+.++.|. ++..|++|..|+.|.+||.....++..+.+| ...|.++.+ .|++.+|++++.||.
T Consensus 199 A~-v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 199 AS-VFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred Hh-Hhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCce
Confidence 33 2333222 2457777775 5668999999999999999999999999998 999999984 567889999999999
Q ss_pred EEEEeCCCC
Q 014114 325 LRFWDIKTR 333 (430)
Q Consensus 325 v~iwd~~~~ 333 (430)
|++||++..
T Consensus 275 I~vWd~~~~ 283 (362)
T KOG0294|consen 275 IKVWDIDME 283 (362)
T ss_pred EEEEEcccc
Confidence 999999865
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.2e-28 Score=193.93 Aligned_cols=241 Identities=11% Similarity=0.149 Sum_probs=199.8
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (430)
+.+-.+++.+.. +..|++++.|..+++|+...... -....+.+-.|...|++++|+|.+++|++++.|
T Consensus 15 ~r~W~~awhp~~-------g~ilAscg~Dk~vriw~~~~~~s-----~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 15 DRVWSVAWHPGK-------GVILASCGTDKAVRIWSTSSGDS-----WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CcEEEEEeccCC-------ceEEEeecCCceEEEEecCCCCc-----EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 567777776642 23799999999999999864111 112334444688899999999999999999999
Q ss_pred CeEEEEECCC--CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC--cceEEeeecCC
Q 014114 184 VEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRET 259 (430)
Q Consensus 184 g~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~ 259 (430)
.++.||.-.. .+++..+++|. +.|.+++| +++|++||+++.|+.|-+|.+.... .....++.|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHE---------nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHE---------NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccc---------cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 9999998654 46788888887 77999999 8999999999999999999998433 34678899999
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEcc---CCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
.|..+.|+|...+|++++.|++|++|.-. ...+.+++.+| ...|.+++|++.|..|++++.|++|+||...+.
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~-~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--- 227 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH-ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--- 227 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc-cceEEEEEecCCCceEEEecCCcceEeeeeccC---
Confidence 99999999999999999999999999866 34689999998 789999999999999999999999999986522
Q ss_pred eEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+.......++.+.|. +|.+++++.|+.|++|....
T Consensus 228 ----~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 228 ----LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred ----cchhcccceEeeeec-ccceEeccCCCEEEEEEecC
Confidence 222223446889999 88889999999999998774
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=213.20 Aligned_cols=278 Identities=15% Similarity=0.232 Sum_probs=214.8
Q ss_pred EEEeccCCCCCCce-EEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC
Q 014114 54 VLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
+.+++| +|..++ +|+. ..-.+.||+..+......+..+. +.+.++.+-. ++..+++|...
T Consensus 29 vssl~f--sp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk--------~~v~s~~fR~--------DG~LlaaGD~s 89 (487)
T KOG0310|consen 29 VSSLCF--SPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFK--------DVVYSVDFRS--------DGRLLAAGDES 89 (487)
T ss_pred ceeEec--CCCCCCceEEe-cccEEEEEecchhhhhhhHHhhc--------cceeEEEeec--------CCeEEEccCCc
Confidence 444555 443333 3333 33679999987776666555433 3455555544 34488999999
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
|.++|+++... ..++.++ .|..++..+.|+|. +..+++|+.|+.+++||+.+......+.+|.
T Consensus 90 G~V~vfD~k~r--------~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht------- 153 (487)
T KOG0310|consen 90 GHVKVFDMKSR--------VILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT------- 153 (487)
T ss_pred CcEEEeccccH--------HHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc-------
Confidence 99999995431 1344455 57789999999995 5567788899999999999998766788876
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG- 290 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~- 290 (430)
+.|.|.++. +.++.++++|+.||.|++||++.....+..+ .|..+|.++.+-|.|..|++++. +.|++||+.+|
T Consensus 154 --DYVR~g~~~-~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~ 228 (487)
T KOG0310|consen 154 --DYVRCGDIS-PANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG 228 (487)
T ss_pred --ceeEeeccc-cCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc
Confidence 889999995 3456689999999999999999864434444 47889999999999999998854 46999999855
Q ss_pred eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcE
Q 014114 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPML 369 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v 369 (430)
+.+..+..| ...|+|+++..++..|++++.|+.|++||+.+.+.++.+.+++. |.+++.+|+++. +.|..+|.+
T Consensus 229 qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p----vLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 229 QLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP----VLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred eehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccc----eeeEEecCCCceEEEeccccee
Confidence 455555556 89999999999999999999999999999999999998765444 799999999999 899999998
Q ss_pred EEecCCC
Q 014114 370 EIQNGND 376 (430)
Q Consensus 370 ~vw~~~~ 376 (430)
.+-+...
T Consensus 304 ~~rr~~~ 310 (487)
T KOG0310|consen 304 SIRRREV 310 (487)
T ss_pred eeehhhc
Confidence 8764443
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.8e-28 Score=203.24 Aligned_cols=292 Identities=16% Similarity=0.225 Sum_probs=236.7
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
-+..|..|..++. +++. +|+.+++++|+.|..-.||++.+|..+..+.+|. +.|+++.|.....
T Consensus 56 S~~tF~~H~~svF--avsl--~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK--------DSVt~~~Fshdgt---- 119 (399)
T KOG0296|consen 56 SLVTFDKHTDSVF--AVSL--HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK--------DSVTCCSFSHDGT---- 119 (399)
T ss_pred ceeehhhcCCceE--EEEe--CCCCceEEecCCCceEEEEEccCCcceeEecCCC--------CceEEEEEccCce----
Confidence 3567888999954 4444 5667899999999999999999999888887765 7999999877544
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee-ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
+|+++..+|.+.||....... .|.+ .....|.=+.|+|.+..|+.|+.||.|-+|.+.+......
T Consensus 120 ----lLATGdmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 120 ----LLATGDMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred ----EEEecCCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 999999999999999875432 1222 2346778889999999999999999999999999877788
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
+.+|. ..+++-.| .|+|+.++++..||+|++||+.+++ ++..+.. ......++.++..+..++.|+.
T Consensus 186 ~~Gh~---------~~ct~G~f--~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 186 MSGHN---------SPCTCGEF--IPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred ecCCC---------CCcccccc--cCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccC
Confidence 88876 66888899 7899999999999999999999976 4555543 3456788999999999999999
Q ss_pred CCCEEEEEccCCeEEeEEec-------cccCcEEEEEE---cCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccccee
Q 014114 279 SGDLASVDIRTGKLLGCFIG-------KCSGSIRSIAR---HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~-------~~~~~v~~i~~---s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
++.+++-+..+++.+....+ .+...+.++.+ +..-++.|+|+.||+|.|||+...++.+.+. |..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---he~~- 329 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---HEDG- 329 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---CCCc-
Confidence 99999999999998877763 12444555554 4456788999999999999998877766542 4344
Q ss_pred EEEeeecCCcceeeecCCCcEEEecCCCCC
Q 014114 349 VFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 349 i~~~~~s~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
|+.+.|-++..+++++.+|.|+.||....+
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccc
Confidence 699999994444999999999999998765
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.5e-30 Score=213.68 Aligned_cols=272 Identities=13% Similarity=0.135 Sum_probs=214.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|+|||+... .++.+|..|.+.+.-+++.. ..+++++.|.+|+.|-+. +..+.++.+-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR-----~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~-~~p~~tilg~ 147 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQR-----ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKID-GPPLHTILGK 147 (433)
T ss_pred hhhhccccCceEEEEehhhh-----hhhheeecccCceeeEEecc------cceEEecCCcceeeeecc-CCcceeeecc
Confidence 45899999999999999985 77889999999977666665 348999999999999874 4555555441
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
..+..+.... ..+.++++++ .+.||+..... ++..+... ...|.++.|+|-
T Consensus 148 ---------s~~~gIdh~~--------~~~~FaTcGe--~i~IWD~~R~~--------Pv~smswG-~Dti~svkfNpvE 199 (433)
T KOG0268|consen 148 ---------SVYLGIDHHR--------KNSVFATCGE--QIDIWDEQRDN--------PVSSMSWG-ADSISSVKFNPVE 199 (433)
T ss_pred ---------cccccccccc--------ccccccccCc--eeeecccccCC--------ccceeecC-CCceeEEecCCCc
Confidence 1222232222 2336777765 68899876543 33333332 356899999995
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
...|++++.|+.|.+||++++.++..+... ..-+.++| +|..-.|+++++|..++.||++....++..
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~Isw--nPeafnF~~a~ED~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICW--NPEAFNFVAANEDHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeee----------ccccceec--Cccccceeeccccccceehhhhhhcccchh
Confidence 456778889999999999999888766542 34577899 788888999999999999999998889999
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
+.+|.+.|.++.|||.|+.|++|+.|.+|+||..+.+...-.+....-..|.++.||.|.+++++||.|+.|++|...-.
T Consensus 268 ~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 99999999999999999999999999999999998776544443333567999999999999999999999999987665
Q ss_pred ceeeE
Q 014114 334 QLLSA 338 (430)
Q Consensus 334 ~~~~~ 338 (430)
+.+..
T Consensus 348 eklgv 352 (433)
T KOG0268|consen 348 EKLGV 352 (433)
T ss_pred hhcCC
Confidence 55554
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-29 Score=199.76 Aligned_cols=269 Identities=12% Similarity=0.145 Sum_probs=207.3
Q ss_pred CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-CceeeeeeecCCCCCC
Q 014114 22 SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQ 100 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~ 100 (430)
..|.+.|-++... +-+..+......-....++|..+. .+.+++++.||+++|||... ..++..++.|.
T Consensus 36 G~G~L~ile~~~~-----~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~----- 104 (311)
T KOG0277|consen 36 GNGRLFILEVTDP-----KGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK----- 104 (311)
T ss_pred cCceEEEEecCCC-----CCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEeccCCCCcchhHHHhhh-----
Confidence 3588888888742 223333322222235555553343 34688899999999999642 34555565544
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEE
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLF 179 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~ 179 (430)
..|.++.+..... ..+++++-|++|++|+..... .++.+. .|...|....|+| ..+++++
T Consensus 105 ---~EV~Svdwn~~~r-------~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 105 ---REVYSVDWNTVRR-------RIFLTSSWDGTIKLWDPNRPN--------SVQTFN-GHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred ---hheEEeccccccc-------eeEEeeccCCceEeecCCCCc--------ceEeec-CCccEEEEEecCCCCCCeEEE
Confidence 6777777765444 478888999999999977544 566666 5888999999999 6789999
Q ss_pred ecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCC
Q 014114 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET 259 (430)
Q Consensus 180 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 259 (430)
++.|+++++||++.......+..|. ..+.++.|. .-+.+.+++|+.|+.|+.||++..+.|+..+.+|.-
T Consensus 166 ~Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~-ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~ 235 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWS-KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL 235 (311)
T ss_pred ccCCceEEEEEecCCCceeEEEecc---------ceeEeeccc-ccCCcEEEecCCCceEEEEehhhccccceeecCCce
Confidence 9999999999998755444576665 568999996 456789999999999999999999999999999999
Q ss_pred CeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Q 014114 260 PIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 260 ~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~v~iwd~ 330 (430)
.|+.+.|||.. ..|++++.|-+++|||...+.-......||..-|..+.|++ +..++|+++.|..++||+.
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999965 68899999999999999866544333345599999999998 5678999999999999984
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=230.20 Aligned_cols=302 Identities=17% Similarity=0.171 Sum_probs=207.4
Q ss_pred eecC-CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec-CCCCCC----CCCCceEEEEeeccCc
Q 014114 43 ERWG-DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA-GDSGAQ----PEDDGIVGLHLFKRQR 116 (430)
Q Consensus 43 ~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~----~~~~~i~~~~~~~~~~ 116 (430)
+.+. .|.++ |.++.| ++||+|||+|+.||.|+||.+...+....-... ....+. ....++..-. -....
T Consensus 260 Qe~~~ah~ga--Iw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~~ 334 (712)
T KOG0283|consen 260 QEISNAHKGA--IWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKISS 334 (712)
T ss_pred eccccccCCc--EEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-ccccc
Confidence 3445 67777 566666 789999999999999999998653331111110 000000 0000000000 00000
Q ss_pred cccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 014114 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK 196 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 196 (430)
.....-.+.....+ .....+....+.+++.|. .|.+.|..+.|+. .++|++++.|.+|++|++...++
T Consensus 335 -----~~s~~~~~~~s~~~-----~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~C 402 (712)
T KOG0283|consen 335 -----RTSSSRKGSQSPCV-----LLPLKAFVFSEKPFCEFK-GHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKEC 402 (712)
T ss_pred -----cccccccccCCccc-----cCCCccccccccchhhhh-ccchhheeccccc-CCeeEeccccccEEeecCCCcce
Confidence 00000111111111 111111222345666665 6889999999995 57999999999999999999999
Q ss_pred eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE
Q 014114 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 276 (430)
+..+... +.|+|++|+ +-|.++|++|+.||.|+||++...+ +.....-..-|++++|.|+|++.++|
T Consensus 403 L~~F~Hn----------dfVTcVaFn-PvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 403 LKVFSHN----------DFVTCVAFN-PVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred eeEEecC----------CeeEEEEec-ccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEE
Confidence 9888743 889999997 4578999999999999999998733 44444334789999999999999999
Q ss_pred cCCCCEEEEEccCCeEEeEEecc-------ccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEEeeccccce-
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE- 347 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~- 347 (430)
+.+|.+++|++...+....+.-+ ....|+.+.|.|.. ..+++.+.|..|||||.++.+++.. ++|..+.
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K--fKG~~n~~ 547 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK--FKGFRNTS 547 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh--hcccccCC
Confidence 99999999999877765544321 02279999999854 3577777899999999988888887 5544322
Q ss_pred eEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 348 VVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 348 ~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.-....|+.||++ ++++.|..|++|+...
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 2367799999999 9999999999999743
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.1e-30 Score=212.48 Aligned_cols=288 Identities=13% Similarity=0.161 Sum_probs=226.1
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
..+..+.+|..++.++|-.+... ..+++|+.||.|+|||+....++..++.|. +.|.++.+-.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~l---s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~--------G~V~Gi~v~~------ 119 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKL---STVASGSCDGEVKIWNLSQRECIRTFKAHE--------GLVRGICVTQ------ 119 (433)
T ss_pred cchhhccccccccchhhcCcchh---hhhhccccCceEEEEehhhhhhhheeeccc--------CceeeEEecc------
Confidence 34566778989877776654221 458999999999999999989999998865 5777777744
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
..+++++.|.+++.|.++.. .++.+.. ...+..+.-+..+..+++++. .|.|||.....++..
T Consensus 120 ----~~~~tvgdDKtvK~wk~~~~---------p~~tilg--~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~s 182 (433)
T KOG0268|consen 120 ----TSFFTVGDDKTVKQWKIDGP---------PLHTILG--KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSS 182 (433)
T ss_pred ----cceEEecCCcceeeeeccCC---------cceeeec--cccccccccccccccccccCc--eeeecccccCCccce
Confidence 38999999999999998752 3333332 345666766667788888887 499999988777776
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
+.-.. +.|.++.| +|.. ..|++++.|+.|.|||++... |+..+.. ...-..|+|+|.+-.|++|++
T Consensus 183 mswG~---------Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 183 MSWGA---------DSISSVKF--NPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred eecCC---------CceeEEec--CCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccccceeeccc
Confidence 66543 66999999 5554 567777799999999999855 5555443 245678999998888999999
Q ss_pred CCCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC
Q 014114 279 SGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 279 dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
|..++.||++.. +++..+.+| .+.|.++.|||.|+-+++||.|.+|+||.+..+..-.. +..... ..|.++.||.|
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-YhtkRM-q~V~~Vk~S~D 326 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-YHTKRM-QHVFCVKYSMD 326 (433)
T ss_pred cccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcchhh-hhHhhh-heeeEEEEecc
Confidence 999999999875 467778888 99999999999999999999999999999987765443 222222 23799999999
Q ss_pred cce-eeecCCCcEEEecCCCC
Q 014114 358 EVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 358 g~~-~~~~~d~~v~vw~~~~~ 377 (430)
.++ ++|++|+.|++|..+..
T Consensus 327 skyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 327 SKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ccEEEecCCCcceeeeecchh
Confidence 999 99999999999998763
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=206.77 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=231.6
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.. .|..+.+++|+.|..+.++|...++.+..+++|. ..|..+.+.+... .+++++.|-
T Consensus 222 i~ald~--~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~--------kki~~v~~~~~~~--------~v~~aSad~ 283 (506)
T KOG0289|consen 222 ITALDI--IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT--------KKITSVKFHKDLD--------TVITASADE 283 (506)
T ss_pred eeEEee--cCCCCcceecCCCCceEEEecchhhhhhhccCcc--------eEEEEEEeccchh--------heeecCCcc
Confidence 344444 3335679999999999999999999999999865 5677777766555 899999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.++||+....... .+ -..|..+|+.+..+|.+.||++++.|++..+.|++++..+.........
T Consensus 284 ~i~vws~~~~s~~--------~~-~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~------- 347 (506)
T KOG0289|consen 284 IIRVWSVPLSSEP--------TS-SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD------- 347 (506)
T ss_pred eEEeeccccccCc--------cc-cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-------
Confidence 9999997654321 11 2256789999999999999999999999999999999988776543211
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
..+++.+| +|||.+|.+|..|+.|++||+..+. .+..|.+|.++|..|+|+.+|-+|++++.|+.|++||++..+..
T Consensus 348 v~~ts~~f--HpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 348 VEYTSAAF--HPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred ceeEEeeE--cCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 44889999 8999999999999999999999866 58899999999999999999999999999999999999998888
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEE
Q 014114 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT--RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLE 370 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~ 370 (430)
.++.-....+|.++.|.+.|.+|+.++.|=+|++++-.+ ..++.. +..|. +..+.+.|....++ ++++.|..++
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~--~~~~s-g~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE--LADHS-GLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh--hhhcc-cccceeeecccceEEeeccchhheE
Confidence 887765455799999999999999999888888887443 344444 55554 44689999999999 9999999998
Q ss_pred EecC
Q 014114 371 IQNG 374 (430)
Q Consensus 371 vw~~ 374 (430)
++..
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 71
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.7e-29 Score=222.31 Aligned_cols=298 Identities=12% Similarity=0.179 Sum_probs=226.2
Q ss_pred CcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce------eeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 49 HSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
...+.+...-.-+.|.++||++|+.||.|++|+...... +..++. |.+.+..+.+.....
T Consensus 21 ~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--------HsDWVNDiiL~~~~~------ 86 (735)
T KOG0308|consen 21 RNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--------HSDWVNDIILCGNGK------ 86 (735)
T ss_pred cccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--------hHhHHhhHHhhcCCC------
Confidence 333443333334567888999999999999999854322 222332 335666666655433
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE-cCCCCEEEEecCCCeEEEEECCCC--ceeee
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWT 199 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~ 199 (430)
.|++++.|-++++|+...... ..+.... .|...|.|+++ -++..++++|+.|+.|.+||++++ +.+..
T Consensus 87 --tlIS~SsDtTVK~W~~~~~~~------~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 87 --TLISASSDTTVKVWNAHKDNT------FCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred --ceEEecCCceEEEeecccCcc------hhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence 899999999999999865431 1122222 46789999999 778899999999999999999987 44555
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
+...........+...|.+++. ++.+..|++|+..+.+++||.++.++ +..+.+|...|..+..++||+.+++++.|
T Consensus 158 ~n~~t~~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ccccccccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCC
Confidence 5444444444345578999998 78889999999999999999999775 77888999999999999999999999999
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
|+|++||+...+++.++..| ...|+++..+|+-..+++|+.||.|..=|+++......+.- .+..+..+..+....
T Consensus 235 gtIrlWdLgqQrCl~T~~vH-~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~ 310 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVH-KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDN 310 (735)
T ss_pred ceEEeeeccccceeeeEEec-cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccC
Confidence 99999999999999999998 78899999999999999999999999999998533332211 122345555554333
Q ss_pred e-eeecCCCcEEEecCCC
Q 014114 360 A-NAAADAPMLEIQNGND 376 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~~~~ 376 (430)
- -++..|+.|+-|....
T Consensus 311 ~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 311 SVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CceeeeccccceecCCcc
Confidence 3 6677778888887654
No 72
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-28 Score=198.32 Aligned_cols=318 Identities=16% Similarity=0.162 Sum_probs=251.8
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeee
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
.|+.|+++.-.+++++ ..++..|.+|..++.-++... ..+.+.+++.|.+-+||.+++|+++..+
T Consensus 122 a~tsrivssFk~~t~~-----------~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y 186 (481)
T KOG0300|consen 122 APTSRIVSSFKDGTVK-----------FRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATY 186 (481)
T ss_pred CCcchheeeecCCcee-----------Eeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeee
Confidence 4556777777777643 156778889999876665544 2347899999999999999999999999
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc--------c-----------------
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------S----------------- 146 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~--------~----------------- 146 (430)
.+|. +.+.++++.+... .+++++.|++..||.....-. .
T Consensus 187 ~GH~--------GSVNsikfh~s~~--------L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~ 250 (481)
T KOG0300|consen 187 TGHT--------GSVNSIKFHNSGL--------LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT 250 (481)
T ss_pred cccc--------cceeeEEeccccc--------eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence 8866 6889999988555 899999999999997321100 0
Q ss_pred --c-cCCcceeeEEe---eccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeE
Q 014114 147 --A-ESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 147 --~-~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
+ .++..+|++-- ..|...|.+..|-..++.+++++.|.+..+||+++++.+..+.+|. ...+.++
T Consensus 251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd---------~ELtHcs 321 (481)
T KOG0300|consen 251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD---------SELTHCS 321 (481)
T ss_pred ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc---------hhccccc
Confidence 0 11112333321 1356678888888899999999999999999999999999999887 4466666
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe-EEeEEecc
Q 014114 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGK 299 (430)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~ 299 (430)
- +|..+++++.+.|.+.++||.+..-..+..|++|...|+++.|..+. .+++|+.|.+|++||+++.+ ++.++..
T Consensus 322 t--HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt- 397 (481)
T KOG0300|consen 322 T--HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT- 397 (481)
T ss_pred c--CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-
Confidence 6 78999999999999999999997666688999999999999998654 78999999999999998764 6777776
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEe---eccccceeEEEeeecCCcce---eeecCCCcEEEec
Q 014114 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF---LKQHLNEVVFDSAFADKEVA---NAAADAPMLEIQN 373 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~---~~~~~d~~v~vw~ 373 (430)
.++++.++.+..++.|+.--.+..|++||+. |..+..++ -.+| ...+.|++|..+-.. ++++.|..+.-|.
T Consensus 398 -dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 398 -DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred -CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCccccccc-ceeeeeeeccccCcccccccccccceeeeeE
Confidence 6899999999988899888888999999986 55555532 2244 456799999876554 8999999999998
Q ss_pred CCC
Q 014114 374 GND 376 (430)
Q Consensus 374 ~~~ 376 (430)
.+.
T Consensus 475 in~ 477 (481)
T KOG0300|consen 475 INT 477 (481)
T ss_pred ecc
Confidence 875
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=211.75 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=216.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+|+||+.|..|++|+..... ..+..++.+..++ +.++.+ .+++.++++++.|+.+++|++...+...++.+|
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~--it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH 260 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGN--ITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH 260 (459)
T ss_pred chhhhcchhhhhhhhhcccch---hhhhhhhhccCCC--cceeee--cCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence 578999999999999998741 2356677776666 555655 667889999999999999999999999999887
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. +.+.++.+...+. .+++++.|-+++.|++..... .+... ....+..|..+ .
T Consensus 261 t--------dkVt~ak~~~~~~--------~vVsgs~DRtiK~WDl~k~~C--------~kt~l--~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 261 T--------DKVTAAKFKLSHS--------RVVSGSADRTIKLWDLQKAYC--------SKTVL--PGSQCNDIVCS--I 312 (459)
T ss_pred c--------cceeeehhhcccc--------ceeeccccchhhhhhhhhhhe--------ecccc--ccccccceEec--c
Confidence 6 7888888876444 699999999999999875321 11111 12333444443 5
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
..+++|..|++|++||.++..+......+ +.|+++.. ++++..|.+++.|.++.++|+++.+ ....+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~e-I~~~~ 379 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKE-IRQTF 379 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecC----------cceeeEee--ccCCeEEeeecCCCceeeeeccccc-EEEEe
Confidence 67889999999999999999998888765 56999999 8899999999999999999999855 35555
Q ss_pred eec----CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccC-cEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 255 DFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 255 ~~~----~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
.+. ....+.+.|||++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 442 234788999999999999999999999999999999888865333 69999999999999999999999999
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=6.2e-28 Score=224.37 Aligned_cols=266 Identities=16% Similarity=0.235 Sum_probs=225.0
Q ss_pred CceEEEEccCCeEEEeccCCCceeee-eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 65 DPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
+.++++++.|++|++||..++..+.. +.+|. +.+.++++... ++.+++|+.|.+++||++...
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~--------g~V~~l~~~~~--------~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF--------GGVWGLAFPSG--------GDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCC--------CCceeEEEecC--------CCEEEEEecCCcEEeEecCCC
Confidence 34799999999999999999998887 77755 78888888753 349999999999999997643
Q ss_pred cccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
. .+..+. .|...|.++... ..++++|+.|.+|++|++.++.++..+.+|. ..|.++..
T Consensus 282 ~--------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~---------~~V~~v~~-- 339 (537)
T KOG0274|consen 282 E--------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT---------GPVNCVQL-- 339 (537)
T ss_pred c--------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---------ccEEEEEe--
Confidence 3 555555 577788888774 4678889999999999999999999998765 77999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-eEEeEEeccccC
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSG 302 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 302 (430)
++.++++|+.|++|++||+.+++ ++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++.++.+| ..
T Consensus 340 --~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~ 414 (537)
T KOG0274|consen 340 --DEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TS 414 (537)
T ss_pred --cCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC-cc
Confidence 58899999999999999999866 59999999999999988664 79999999999999999999 999999998 88
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecc-ccceeEEEeeecCCcceeeecCCCcEEEecCCCCCC
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ-HLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~~~ 379 (430)
-+..+.+ .+++|++++.|++|++||..+++++.. +.+ |... +..+++. +..+++++.++.+++||......
T Consensus 415 ~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~--~~~~~~~~-v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 415 LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRT--LEGRHVGG-VSALALG-KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccccccc--ccceeEeccccccEEEeecccCceeee--eccCCccc-EEEeecC-cceEEEEecCCeeEEEecccCch
Confidence 8876666 778999999999999999999999999 444 3333 5777766 44459999999999999876543
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=208.15 Aligned_cols=286 Identities=13% Similarity=0.219 Sum_probs=226.1
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
...+..|.+.+..+.+-. +...|++|+.|..|++|++..++ .+.++. +..+.|..+.+-....
T Consensus 168 ~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------Gs~g~it~~d~d~~~~--- 232 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLA--------GSLGNITSIDFDSDNK--- 232 (459)
T ss_pred hhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccchhhhhhhhh--------ccCCCcceeeecCCCc---
Confidence 344556778766666655 33469999999999999987665 333333 2335788787766444
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.+++++.|+.+++|++...... ..+. .|...|+++.|......+++|+.|.+|++||+....+..+
T Consensus 233 -----~~iAas~d~~~r~Wnvd~~r~~--------~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 233 -----HVIAASNDKNLRLWNVDSLRLR--------HTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred -----eEEeecCCCceeeeeccchhhh--------hhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 9999999999999998754321 1222 4788999999987666699999999999999999888766
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
+-.. ..+..+.. ....+++|-.|++|++||.+... +......+ +.|+++..++++..|++++.|
T Consensus 299 ~l~~----------S~cnDI~~----~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g-g~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 299 VLPG----------SQCNDIVC----SISDVISGHFDKKVRFWDIRSAD-KTRSVPLG-GRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred cccc----------ccccceEe----cceeeeecccccceEEEeccCCc-eeeEeecC-cceeeEeeccCCeEEeeecCC
Confidence 5432 34555655 35678899999999999999865 47777766 499999999999999999999
Q ss_pred CCEEEEEccCCeEEeEEecc---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 280 GDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
.++.+.|+++.+....+... ....++.+.|||++.|+++|+.||.|+||++.++++...+..... ...|++++|+|
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s-~~aI~s~~W~~ 441 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS-NAAITSLSWNP 441 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC-CcceEEEEEcC
Confidence 99999999998888777642 134588999999999999999999999999999999888543332 33579999999
Q ss_pred Ccce-eeecCCCcEEEec
Q 014114 357 KEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 357 ~g~~-~~~~~d~~v~vw~ 373 (430)
.|.. ++++.++.+.+|.
T Consensus 442 sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 442 SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCchhhcccCCcceEecC
Confidence 9999 9999999999983
No 76
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.2e-27 Score=217.10 Aligned_cols=205 Identities=11% Similarity=0.119 Sum_probs=166.6
Q ss_pred ccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCc-------eeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEE
Q 014114 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKF 230 (430)
Q Consensus 160 ~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l 230 (430)
.|.+.|.+++|+| ++++|++|+.|++|++||+.++. .+..+.+|. ..|.+++| +|++ ++|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---------~~V~~l~f--~P~~~~iL 141 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---------KKVGIVSF--HPSAMNVL 141 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---------CcEEEEEe--CcCCCCEE
Confidence 5788999999999 88999999999999999997653 344555543 67999999 6764 699
Q ss_pred EEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEc
Q 014114 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 231 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s 310 (430)
++++.|+.|++||+.+++ .+..+..|...|.+++|+|++.+|++++.|+.|+|||+++++.+..+.+|....+..+.|.
T Consensus 142 aSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred EEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 999999999999999865 4778888999999999999999999999999999999999999999988833345678899
Q ss_pred CCCCEEEEEe----CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeec-CCCcEEEecCCCC
Q 014114 311 PTLPIIASCG----LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPMLEIQNGNDT 377 (430)
Q Consensus 311 ~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~-~d~~v~vw~~~~~ 377 (430)
+++..+++++ .|+.|++||+++....... ...+....+....|++++.+ ++++ .|+.|++|+....
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~-~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYST-VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE-eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 9888877765 4789999999876533221 22222334567789999998 6655 6999999998753
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.6e-27 Score=223.37 Aligned_cols=307 Identities=11% Similarity=0.118 Sum_probs=234.3
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEc--cCCeEEEeccCCC-ceeee--eeecCCCC-CCCCCCceEEEEeeccCc
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNG-DLRVA--ISNAGDSG-AQPEDDGIVGLHLFKRQR 116 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~--~dg~i~iwd~~~~-~~~~~--~~~~~~~~-~~~~~~~i~~~~~~~~~~ 116 (430)
..|-.|.... +.++.. +|+|..+++|+ .||.++||+...- +.... ........ ...|...+.|+.|.+...
T Consensus 6 p~wv~H~~~~-IfSIdv--~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 6 PTWVNHNEKS-IFSIDV--HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred ccccccCCee-EEEEEe--cCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence 3555565543 556655 99999999999 9999999987421 00000 00001111 114557888988887544
Q ss_pred cccccCCceEEEEccCCeeEEEEeeeeccc----ccCCc------ceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeE
Q 014114 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVS----AESSC------STVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEV 186 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~~~~------~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 186 (430)
+|++|+.|..+.||........ +.... +.+.++. .|...|..++|+|++.+|++++.|++|
T Consensus 83 --------~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 83 --------YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred --------eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceE
Confidence 9999999999999998851111 11111 2233333 588999999999999999999999999
Q ss_pred EEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec------CCC
Q 014114 187 NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETP 260 (430)
Q Consensus 187 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~ 260 (430)
.+||..+.+.+..+.+|. ..|..+.| +|-|++|++-+.|++|++|.+.... ..+.+..+ ...
T Consensus 154 iiwn~~tF~~~~vl~~H~---------s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQ---------SLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTF 221 (942)
T ss_pred EEEccccceeeeeeeccc---------ccccceEE--CCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcce
Confidence 999999999999999987 67899999 8999999999999999999977633 24444332 346
Q ss_pred eEEEEeeCCCCEEEEEcC----CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC-----CC------------EEEEE
Q 014114 261 IKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-----LP------------IIASC 319 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~------------~l~s~ 319 (430)
++.+.|||||++|++... -..+.|.+-.+.+.-..|-+| ..++.++.|+|. .. .+|+|
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 788999999999998642 245889998888888999999 889999999982 11 67899
Q ss_pred eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+.|++|-||.....+++.. ...-.+..|.+++|+|||.. ++++.||+|.++....
T Consensus 301 SqDrSlSVW~T~~~RPl~v--i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFV--IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCCccEEEEecCCCCchhh--hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999999999987777766 33334555899999999999 9999999999998765
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=8.7e-28 Score=192.27 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=209.8
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecC
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
.|.+++.|..+.||-...+ ..+.++.+|.+.+.++.+.++ .++|++|+.|.+++|||+.+|+++..++.-.
T Consensus 24 LlFscaKD~~~~vw~s~nG-----erlGty~GHtGavW~~Did~~----s~~liTGSAD~t~kLWDv~tGk~la~~k~~~ 94 (327)
T KOG0643|consen 24 LLFSCAKDSTPTVWYSLNG-----ERLGTYDGHTGAVWCCDIDWD----SKHLITGSADQTAKLWDVETGKQLATWKTNS 94 (327)
T ss_pred EEEEecCCCCceEEEecCC-----ceeeeecCCCceEEEEEecCC----cceeeeccccceeEEEEcCCCcEEEEeecCC
Confidence 4889999999999988665 788999999999999988883 4589999999999999999999999987632
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEc-----cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-----TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
++..+.+.. .++.++.+. ..+.+.++++...+....+.+-..++- .+...+..+-|
T Consensus 95 ---------~Vk~~~F~~--------~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~W 155 (327)
T KOG0643|consen 95 ---------PVKRVDFSF--------GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSALW 155 (327)
T ss_pred ---------eeEEEeecc--------CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--CCccceeeeee
Confidence 455555543 223444443 346788888875543222222233332 23478999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCcee-eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 171 DISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 171 ~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
.|-+++|++|..||.|.+||+++++.+ ...+.|. ..|+.+.+ +++..++++++.|.+-++||.++.+
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~---------~~Ind~q~--s~d~T~FiT~s~Dttakl~D~~tl~- 223 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS---------SKINDLQF--SRDRTYFITGSKDTTAKLVDVRTLE- 223 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhhc---------cccccccc--cCCcceEEecccCccceeeecccee-
Confidence 999999999999999999999998554 3434443 56999999 8999999999999999999999865
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC--E------------EEEEccCCeEEeEEeccccCcEEEEEEcCCCCE
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD--L------------ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--v------------~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 315 (430)
.+.++.. ..||++.+++|....++.|+.... | ++|++-..+.+..+++| -++|++++|+|+|+.
T Consensus 224 v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPINsvAfhPdGks 301 (327)
T KOG0643|consen 224 VLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPINSVAFHPDGKS 301 (327)
T ss_pred eEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCcceeEECCCCcc
Confidence 3555554 579999999998777777654322 2 22222223446677888 899999999999999
Q ss_pred EEEEeCCCeEEEEeCC
Q 014114 316 IASCGLDSYLRFWDIK 331 (430)
Q Consensus 316 l~s~~~d~~v~iwd~~ 331 (430)
.++|++||.||+.-+.
T Consensus 302 YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccCCCCceEEEEEec
Confidence 9999999999998654
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-27 Score=212.69 Aligned_cols=271 Identities=15% Similarity=0.157 Sum_probs=218.6
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
+++-+....|.+|+..++ .+......+... +..+.| +++|.+|++|..+|.|.|||..+.+.+..+..+
T Consensus 190 ~laValg~~vylW~~~s~-----~v~~l~~~~~~~--vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-- 258 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSG-----SVTELCSFGEEL--VTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-- 258 (484)
T ss_pred eEEEEecceEEEEecCCC-----ceEEeEecCCCc--eEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccccCC--
Confidence 455555568999999885 322222222445 555555 678899999999999999999988888888772
Q ss_pred CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCE
Q 014114 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
+...|.++.|- ...+.+|+.++.|..+++....... .. ...|...|..++|++++.+
T Consensus 259 -----h~~rvg~laW~----------~~~lssGsr~~~I~~~dvR~~~~~~-------~~-~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 259 -----HASRVGSLAWN----------SSVLSSGSRDGKILNHDVRISQHVV-------ST-LQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred -----cCceeEEEecc----------CceEEEecCCCcEEEEEEecchhhh-------hh-hhcccceeeeeEECCCCCe
Confidence 33578888884 3489999999999999998765432 21 3357899999999999999
Q ss_pred EEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe--CCCcEEEEECCCCCcceEEe
Q 014114 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 177 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~ 254 (430)
+|+|+.|+.+.|||....+....+..|. ..|.+++|+| -...+||+|+ .|+.|++||..++.. +..+
T Consensus 316 lASGgnDN~~~Iwd~~~~~p~~~~~~H~---------aAVKA~awcP-~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~v 384 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEPKFTFTEHT---------AAVKALAWCP-WQSGLLATGGGSADRCIKFWNTNTGAR-IDSV 384 (484)
T ss_pred eccCCCccceEeccCCCccccEEEeccc---------eeeeEeeeCC-CccCceEEcCCCcccEEEEEEcCCCcE-eccc
Confidence 9999999999999998888888888876 6799999963 2456788865 699999999998764 5444
Q ss_pred eecCCCeEEEEeeCCCCEEEEE--cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 255 DFRETPIKAVAEEPDSFNIYIG--NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.. ...|.+|.|++..+.|+++ ..++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++..
T Consensus 385 dt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 385 DT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 43 4789999999998777764 46678999999999999999999 99999999999999999999999999999876
Q ss_pred Cc
Q 014114 333 RQ 334 (430)
Q Consensus 333 ~~ 334 (430)
..
T Consensus 463 ~~ 464 (484)
T KOG0305|consen 463 ER 464 (484)
T ss_pred CC
Confidence 43
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=9.8e-28 Score=208.45 Aligned_cols=287 Identities=14% Similarity=0.080 Sum_probs=215.0
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
--|+++|+.|-.|++||..+.+..++....-.....+.+..+.+ ++.|..|++.+.....+|+|-...+.+...++
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y----s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG 254 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY----SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG 254 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCcccccccceeee----cCCCCeEEEEecCcceeEEccCCceeeeeecc
Confidence 37999999999999999998655555533322233445444544 55677888888889999999754444445554
Q ss_pred ---cCCCCCC-CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec----cCCce
Q 014114 94 ---AGDSGAQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC----ASGTI 165 (430)
Q Consensus 94 ---~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~----~~~~i 165 (430)
+..+..+ +|...+.|-+|.+... +.+++++.||++++|++..... ...++... ..-.+
T Consensus 255 DQYI~Dm~nTKGHia~lt~g~whP~~k-------~~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 255 DQYIRDMYNTKGHIAELTCGCWHPDNK-------EEFLTCSYDGTLRIWDVNNTKS-------QLQVIKTKPAGGKRVPV 320 (641)
T ss_pred chhhhhhhccCCceeeeeccccccCcc-------cceEEecCCCcEEEEecCCchh-------heeEEeeccCCCcccCc
Confidence 1111111 4555677777776554 5899999999999999976542 22333322 12357
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCce--e-eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--I-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
+.++|+++++.||.|..||.|.+|+...... . ..-..|.. ...|+|+.| +++|++|++-+.|+++++|
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------g~~Itsi~F--S~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------GQDITSISF--SYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------CCceeEEEe--ccccchhhhccCCCceeee
Confidence 8999999999999999999999999754221 1 12222321 146999999 8999999999999999999
Q ss_pred ECCCCCcceEEeeec--CCCeEEEEeeCCCCEEEEEcC------CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC
Q 014114 243 DTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 243 d~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 314 (430)
|++..++++....+- ..+-+.++|||+.++|++|.. .|.+.+||..+...++++.-. ...|..+.|+|.-+
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLN 470 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhh
Confidence 999988887766553 346678899999999999863 367999999999999998876 78999999999999
Q ss_pred EEEEEeCCCeEEEE
Q 014114 315 IIASCGLDSYLRFW 328 (430)
Q Consensus 315 ~l~s~~~d~~v~iw 328 (430)
.|+.++.||.+++|
T Consensus 471 Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVY 484 (641)
T ss_pred heeeecCCCceEEE
Confidence 99999999999987
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-27 Score=211.03 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=223.0
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
+.||+|. ...|.+|+..+++........ ...++++.|.... ..|++|..+|.+.|||+....
T Consensus 189 n~laVal-g~~vylW~~~s~~v~~l~~~~--------~~~vtSv~ws~~G--------~~LavG~~~g~v~iwD~~~~k- 250 (484)
T KOG0305|consen 189 NVLAVAL-GQSVYLWSASSGSVTELCSFG--------EELVTSVKWSPDG--------SHLAVGTSDGTVQIWDVKEQK- 250 (484)
T ss_pred CeEEEEe-cceEEEEecCCCceEEeEecC--------CCceEEEEECCCC--------CEEEEeecCCeEEEEehhhcc-
Confidence 4566664 457999999888866555442 3578888887744 499999999999999987544
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-ecCCCCCCCCcccCcceeEeEEeeC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.++.....|...|-+++|+ +..+.+|+.++.|..+|++..+.... +..|. ..|..+.| +
T Consensus 251 -------~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~---------qeVCgLkw--s 310 (484)
T KOG0305|consen 251 -------KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR---------QEVCGLKW--S 310 (484)
T ss_pred -------ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccc---------ceeeeeEE--C
Confidence 3444454478899999997 67899999999999999998776555 55554 66999999 8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCC-CCEEEEEc--CCCCEEEEEccCCeEEeEEecccc
Q 014114 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 225 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~ 301 (430)
+++.++|+|+.|+.+.|||... ..+...+..|...|.+++|+|- ..+||+|+ .|+.|++||..+++.+..+.. .
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--g 387 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--G 387 (484)
T ss_pred CCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--C
Confidence 9999999999999999999966 4468899999999999999994 46788865 789999999999999998887 6
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 302 GSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
..|.+|.|++..+-|+++. .++.|.||+..+.+.+.. +.+|... |..++++|||.. ++++.|.++++|+.-+.
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~--l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE--LLGHTSR-VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee--ecCCcce-eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8999999999886666543 567899999999888888 7888555 799999999999 99999999999998774
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=203.55 Aligned_cols=274 Identities=11% Similarity=0.115 Sum_probs=215.4
Q ss_pred CCCCCCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce
Q 014114 8 ECPGCPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 8 ~~~~~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
.+|..|.--++|++ -.+.||+..+. ..+.++...... +.+.+| ..||.+||+|...|.|+|+|+.+...
T Consensus 34 fsp~~P~d~aVt~S--~rvqly~~~~~-----~~~k~~srFk~~--v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 34 FSPKHPYDFAVTSS--VRVQLYSSVTR-----SVRKTFSRFKDV--VYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCCCCCCceEEecc--cEEEEEecchh-----hhhhhHHhhccc--eeEEEe--ecCCeEEEccCCcCcEEEeccccHHH
Confidence 34556655555555 46999998874 445556555565 444555 66899999999999999999766556
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEE
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+..+..|. .++..+.+.+.. +..+++|+.|..+++|++... .+...-..|...|.|
T Consensus 103 LR~~~ah~--------apv~~~~f~~~d-------~t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 103 LRQLYAHQ--------APVHVTKFSPQD-------NTMLVSGSDDKVVKYWDLSTA---------YVQAELSGHTDYVRC 158 (487)
T ss_pred HHHHhhcc--------CceeEEEecccC-------CeEEEecCCCceEEEEEcCCc---------EEEEEecCCcceeEe
Confidence 66676655 466655555432 347888999999999998743 233344568899999
Q ss_pred EEEcC-CCCEEEEecCCCeEEEEECCCC-ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 168 SKVDI-SEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 168 ~~~~~-~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
.+|+| ++..+++|++||.|++||++.. ..+.++... .+|..+.| -|.|..|++++. ..|++||+.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg----------~pVe~vl~--lpsgs~iasAgG-n~vkVWDl~ 225 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG----------CPVESVLA--LPSGSLIASAGG-NSVKVWDLT 225 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC----------CceeeEEE--cCCCCEEEEcCC-CeEEEEEec
Confidence 99999 4568999999999999999876 566665532 67889999 578889998764 589999999
Q ss_pred CCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeE
Q 014114 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v 325 (430)
++.+.+..+..|...|+|+.+..++..|++|+-|+.|++||+.+.+.++.+.- .++|.+++.+|+++.++.|..||.+
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecCCCceEEEeccccee
Confidence 77766666666999999999999999999999999999999988899988886 7899999999999999999999988
Q ss_pred EEEeCC
Q 014114 326 RFWDIK 331 (430)
Q Consensus 326 ~iwd~~ 331 (430)
.+=+..
T Consensus 304 ~~rr~~ 309 (487)
T KOG0310|consen 304 SIRRRE 309 (487)
T ss_pred eeehhh
Confidence 776443
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-28 Score=216.08 Aligned_cols=337 Identities=13% Similarity=0.140 Sum_probs=248.8
Q ss_pred CCCCCCCcc-eEeecCCCcEEEEEecCccCC-cchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC
Q 014114 8 ECPGCPPLR-ALTFDSLGLIKVIEARGEDGG-VPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 8 ~~~~~p~~~-l~t~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
..+..|..| |+||+.||.|++|+....... ....+..+..|..-+.-++++- +|+.|++++.|-+|++|+...+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccC
Confidence 345667777 999999999999999752211 1223567777888877777766 3457999999999999999776
Q ss_pred --ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe--ecc
Q 014114 86 --DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCA 161 (430)
Q Consensus 86 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~--~~~ 161 (430)
-++.++..|. ++|.|+++... ....+++|+-|+.|.+|+++............+..-. ..+
T Consensus 106 ~~~c~stir~H~--------DYVkcla~~ak-------~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 106 NTFCMSTIRTHK--------DYVKCLAYIAK-------NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred cchhHhhhhccc--------chheeeeeccc-------CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 4555665554 89999998422 2248999999999999999866431000011111111 145
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
...|.+++.++.+..|++|+..+.|++||.++++.+..+++|. ..|.++.. +++|..+++++.||+|++
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT---------dNVr~ll~--~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT---------DNVRVLLV--NDDGTRLLSASSDGTIRL 239 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc---------cceEEEEE--cCCCCeEeecCCCceEEe
Confidence 5789999999999999999999999999999999999999987 66888888 899999999999999999
Q ss_pred EECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC
Q 014114 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
||+...+ ++.++..|...|.++..+|+-..+++|+.||.|..=|+++......+... ..+|..+..+...+-+-+++.
T Consensus 240 WdLgqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~-daPv~~l~~~~~~~~~WvtTt 317 (735)
T KOG0308|consen 240 WDLGQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE-DAPVLKLHLHEHDNSVWVTTT 317 (735)
T ss_pred eeccccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC-CCchhhhhhccccCCceeeec
Confidence 9999855 58899999999999999999999999999999999999885332222222 667888888765555577888
Q ss_pred CCeEEEEeCCCCcee-------eEEe------ec--------cccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 322 DSYLRFWDIKTRQLL-------SAVF------LK--------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 322 d~~v~iwd~~~~~~~-------~~~~------~~--------~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|+.|+-|...-.-.+ .... .. -+-+..+...+.-.|.+. +|-...|.+.+||.-.
T Consensus 318 ds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 318 DSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred cccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 999999965421111 0000 00 000111233334445666 8889999999999754
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.9e-28 Score=195.91 Aligned_cols=301 Identities=16% Similarity=0.169 Sum_probs=227.4
Q ss_pred CCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC----ceeeeeee----cCCC--CCCCCCCceEEEEeeccC
Q 014114 46 GDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISN----AGDS--GAQPEDDGIVGLHLFKRQ 115 (430)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~----~~~~--~~~~~~~~i~~~~~~~~~ 115 (430)
..|... |-+..| +|||.++|+|+.|..|+|.|++.- +......+ +.|. .+.-|.+.|.++.+.+..
T Consensus 109 t~HK~~--cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 109 TSHKSP--CRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eecccc--eeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 446666 444555 778899999999999999998621 11111111 1111 112355788888888866
Q ss_pred ccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 014114 116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 195 (430)
. .|++++.|++++++|+...... +..+++. ...+|.++.|+|.|.+|++|....++++||+.+-+
T Consensus 185 ~--------ILiS~srD~tvKlFDfsK~saK-----rA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 185 T--------ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred h--------eEEeccCCCeEEEEecccHHHH-----HHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 6 9999999999999998654321 1222222 24689999999999999999999999999999988
Q ss_pred eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe-eecC-CCeEEEEeeCCCCEE
Q 014114 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRE-TPIKAVAEEPDSFNI 273 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~-~~i~~~~~s~~~~~l 273 (430)
+........+ |...|+++.| ++.+++.++++.||.|++||--+.++ +..+ +.|. ..|.+..|..++++|
T Consensus 250 cfvsanPd~q------ht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 250 CFVSANPDDQ------HTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred EeeecCcccc------cccceeEEEe--cCCccEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeEE
Confidence 8766553322 3477999999 89999999999999999999888665 5554 4554 579999999999999
Q ss_pred EEEcCCCCEEEEEccCCeEEeEEeccc----cCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeecccccee
Q 014114 274 YIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
++.+.|..|++|.+.+++++..+.+.. ...-+...|+....+++.-. ..+.+.-||.++...+..+ --+| ++.
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~-slgH-n~a 398 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL-SLGH-NGA 398 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc-ccCC-CCC
Confidence 999999999999999999999987641 11223456777777766554 4567999999998887764 3356 455
Q ss_pred EEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 349 VFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 349 i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+..+.-+|.+.. +++++|...++|-...
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr~ 427 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFWYRRV 427 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeeeeecc
Confidence 699999999998 9999999999997653
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=184.33 Aligned_cols=263 Identities=14% Similarity=0.123 Sum_probs=210.7
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhhe--ecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVE--RWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
|...+|++|+.|+++++|++... ++.. .+.+|...+--+++.. +..+++++++.|..|++||...+++..
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~---~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDP---KHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred ccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCC---CCCcceEEecCCceEEEEEeccCcEEE
Confidence 55578999999999999999874 3333 3445666643333333 234689999999999999999999988
Q ss_pred eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
.+..-. ..+. +.|++. +++++++..|..+...+....... ..+ ...-.+..++
T Consensus 102 ~i~~~~--------eni~-i~wsp~--------g~~~~~~~kdD~it~id~r~~~~~--------~~~--~~~~e~ne~~ 154 (313)
T KOG1407|consen 102 RIETKG--------ENIN-ITWSPD--------GEYIAVGNKDDRITFIDARTYKIV--------NEE--QFKFEVNEIS 154 (313)
T ss_pred EeeccC--------cceE-EEEcCC--------CCEEEEecCcccEEEEEeccccee--------ehh--cccceeeeee
Confidence 876521 2332 566664 449999999999999987643321 111 2234567788
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 170 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
|+-++.+++.....|.|.|......+++..++.|. ....|+.| +|+|++||+|+.|..+.+||+...-
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~---------snCicI~f--~p~GryfA~GsADAlvSLWD~~ELi- 222 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP---------SNCICIEF--DPDGRYFATGSADALVSLWDVDELI- 222 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCC---------cceEEEEE--CCCCceEeeccccceeeccChhHhh-
Confidence 88777777777777999999999999999999876 55778888 9999999999999999999998755
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
+++.+..+.-+|+.++|+.+|++||+|++|..|-|=++++|..+..++. .++...++|+|...+||-++.|.
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCCceeeEEecCC
Confidence 4788888999999999999999999999999999999999999988876 78999999999999999887653
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.4e-27 Score=212.93 Aligned_cols=285 Identities=13% Similarity=0.179 Sum_probs=225.8
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEE-EEeeccCccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~ 118 (430)
++...+.+|...++.+++.. +-.++++++||++++|+-..++.+....... +.+-+.. +++...
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~------~~g~i~~~i~y~e~---- 69 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHAFEG------PKGFIANSICYAES---- 69 (745)
T ss_pred eeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCcccccceeccc------Ccceeeccceeccc----
Confidence 34567788888876666543 2369999999999999976666554332221 2234444 444432
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 198 (430)
+...+++++.|+.+.+|.+.... ++..+. .|...|.+++...++. +++|+.|.++++|-.. ++..
T Consensus 70 ---~~~~l~~g~~D~~i~v~~~~~~~--------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~ 134 (745)
T KOG0301|consen 70 ---DKGRLVVGGMDTTIIVFKLSQAE--------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVY 134 (745)
T ss_pred ---cCcceEeecccceEEEEecCCCC--------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhc
Confidence 23479999999999999876433 334444 6788999999876766 9999999999999764 4555
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.+.+|+ ..|.++.+. |++ .+++|+.|.+|++|.-. ..+.+|.+|...|+.+++-+++ .|++++.
T Consensus 135 ~l~gH~---------asVWAv~~l--~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsN 198 (745)
T KOG0301|consen 135 SLQGHT---------ASVWAVASL--PEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSN 198 (745)
T ss_pred ccCCcc---------hheeeeeec--CCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecC
Confidence 677775 678888884 444 89999999999999863 3588999999999999998775 6788999
Q ss_pred CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
||.|++|++ +++++..+.+| ...|+++...+++..++++++|++++||+.. ++.+.+.+++. .|+++.+-++|
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt---siWsa~~L~Ng 271 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGH-TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT---SIWSAKVLLNG 271 (745)
T ss_pred CceEEEEec-cCceeeeeecc-ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc---ceEEEEEeeCC
Confidence 999999999 89999999998 9999999988888899999999999999875 77787665543 37999999999
Q ss_pred ceeeecCCCcEEEecCCCC
Q 014114 359 VANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 359 ~~~~~~~d~~v~vw~~~~~ 377 (430)
.+++|+.||.|+||.....
T Consensus 272 DIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 272 DIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CEEEeccCceEEEEEeccc
Confidence 9999999999999988753
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.8e-28 Score=193.23 Aligned_cols=278 Identities=15% Similarity=0.175 Sum_probs=221.3
Q ss_pred CCCCCC-cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce
Q 014114 9 CPGCPP-LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 9 ~~~~p~-~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
+|-||. .-|++++.||.--+-+-+++ .-+.+|.+|.+.+.-..+.. +...-|+++.|=+-+|||..+|..
T Consensus 23 s~itp~g~flisa~kd~~pmlr~g~tg-----dwigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 23 SPITPDGYFLISASKDGKPMLRNGDTG-----DWIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred cCCCCCceEEEEeccCCCchhccCCCC-----CcEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhh
Confidence 344555 34788889998777777776 67889999999854444433 334568899999999999999998
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEE
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+..+.- ..-|..+++.. +.++|++++.+..++|++++..... ..-+. .|.+.|..
T Consensus 94 lhsf~h---------khivk~~af~~--------ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~-ghtg~Ir~ 148 (334)
T KOG0278|consen 94 LHSFEH---------KHIVKAVAFSQ--------DSNYLLTGGQEKLLRVFDLNRPKAP-------PKEIS-GHTGGIRT 148 (334)
T ss_pred hhhhhh---------hheeeeEEecc--------cchhhhccchHHHhhhhhccCCCCC-------chhhc-CCCCccee
Confidence 888754 12333444444 3359999999999999998765432 11122 46788999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC
Q 014114 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 247 (430)
+.|....+.|++++.|++|++||.+++..++++... ..|+++.+ +++|.+|.++ ..+.|.+||..+.
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEv--s~dG~ilTia-~gssV~Fwdaksf 215 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEV--SQDGRILTIA-YGSSVKFWDAKSF 215 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------CCCcceee--ccCCCEEEEe-cCceeEEeccccc
Confidence 999988899999999999999999999999988764 56899999 7888876664 5678999999985
Q ss_pred CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE-eccccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 014114 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~ 326 (430)
. ++..+.. ...|.+.+++|+...+++|+.|..++.||..++..+..+ ++| .++|.|+.|+|+|...++|++||+|+
T Consensus 216 ~-~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 216 G-LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred c-ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEE
Confidence 5 3555544 467899999999999999999999999999999999887 777 89999999999999999999999999
Q ss_pred EEeCCCCcee
Q 014114 327 FWDIKTRQLL 336 (430)
Q Consensus 327 iwd~~~~~~~ 336 (430)
||-+..++..
T Consensus 293 lWQt~~~~~~ 302 (334)
T KOG0278|consen 293 LWQTTPGKTY 302 (334)
T ss_pred EEEecCCCch
Confidence 9988765543
No 88
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.4e-26 Score=211.86 Aligned_cols=274 Identities=11% Similarity=0.036 Sum_probs=197.1
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeee-----cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
++..+++++.+.....|+...+..+..+.. ..+..+.+|.+.|.++.|.+.. +..|++++.|+.|++|
T Consensus 31 d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d-------~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD-------PQKLFTASEDGTIMGW 103 (493)
T ss_pred CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC-------CCEEEEEeCCCEEEEE
Confidence 333467777777777777644432221111 0111233566889999987622 2389999999999999
Q ss_pred EeeeecccccCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCccee
Q 014114 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
++....... .....+..+. .|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+..|. ..|.
T Consensus 104 di~~~~~~~-~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~---------~~V~ 172 (493)
T PTZ00421 104 GIPEEGLTQ-NISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS---------DQIT 172 (493)
T ss_pred ecCCCcccc-ccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC---------CceE
Confidence 986432110 0112333343 577899999999975 799999999999999999998888887664 6799
Q ss_pred EeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC-eEEEEeeCCCCEEEEEc----CCCCEEEEEccCCe-
Q 014114 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSGDLASVDIRTGK- 291 (430)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~----~dg~v~iwd~~~~~- 291 (430)
+++| +|++.+|++++.|+.|++||+++++ .+..+.+|... +..+.|.+++..|++++ .|+.|++||+++..
T Consensus 173 sla~--spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 173 SLEW--NLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEE--ECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999 7899999999999999999999866 47778888764 45678888887777654 47899999998754
Q ss_pred EEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 292 LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
++.....+....+....|++++.+|++++ .|+.|++||+.+++++.... ......+..++|.|.-..
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~--~~s~~~~~g~~~~pk~~~ 317 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS--YSSVEPHKGLCMMPKWSL 317 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee--ccCCCCCcceEecccccc
Confidence 34333333245666778999999998887 59999999999998776632 222333567777775433
No 89
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.8e-26 Score=212.54 Aligned_cols=202 Identities=10% Similarity=0.103 Sum_probs=159.7
Q ss_pred ccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCce--------eeeecCCCCCCCCcccCcceeEeEEeeCCCCCE-
Q 014114 160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK--------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK- 229 (430)
Q Consensus 160 ~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 229 (430)
.|.+.|.+++|+|+ +++|++|+.|++|++||+.++.. +..+.+| ...|.+++| +|++..
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH---------~~~V~sVaf--~P~g~~i 140 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH---------KKKISIIDW--NPMNYYI 140 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC---------CCcEEEEEE--CCCCCeE
Confidence 57789999999996 78999999999999999976421 2233333 367999999 787765
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEE---
Q 014114 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--- 306 (430)
Q Consensus 230 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~--- 306 (430)
|++++.|++|++||+++++. +..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+| .+.+.+
T Consensus 141 LaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH-~g~~~s~~v 217 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH-DGGKNTKNI 217 (568)
T ss_pred EEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-cCCceeEEE
Confidence 57899999999999998664 44554 5678999999999999999999999999999999999999998 655433
Q ss_pred --EEEcCCCCEEEEEeCCC----eEEEEeCCC-CceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 307 --IARHPTLPIIASCGLDS----YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 307 --i~~s~~~~~l~s~~~d~----~v~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
..|++++.+|++++.|+ .|+|||+++ .+++..+.+..+.. .+......++|.+ ++|..|+.|++|+...
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 34568999999988774 799999995 66776654544422 2334444566887 8999999999999865
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=205.23 Aligned_cols=301 Identities=15% Similarity=0.110 Sum_probs=212.1
Q ss_pred eEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc-eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc
Q 014114 52 KCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 52 ~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
..+.++.+ .|.|-.|++|+.|-.|++||...-. .+..++...| .....|.++.+..... .|++.+
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~Tg~--------~iLvvs 233 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSVTGD--------QILVVS 233 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecCCCC--------eEEEEe
Confidence 33666666 7788999999999999999986422 1122222221 2234667777766444 788888
Q ss_pred cCCeeEEEEeeeecccccC-CcceeeE-Ee-eccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCc-eeeeecCCCC
Q 014114 131 TKGKASMRSIEVTKVSAES-SCSTVKS-WN-VCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPK 205 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~-~~~~i~~-~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~ 205 (430)
.....+|+|-......... .|..|+- .+ -.|...++|.+|+| +.+.+++++.||++++||+...+ ....++....
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 7788888885433221111 1222221 11 12445688999999 55688999999999999997643 2333332211
Q ss_pred CCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC-cc-eEEeeecCC--CeEEEEeeCCCCEEEEEcCCCC
Q 014114 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RP-VMSFDFRET--PIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~-~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~ 281 (430)
.. ....++.++| ++++++||+|+.||.|.+|+..... .+ ...-.+|.. .|+||+||++|++|++-+.|++
T Consensus 314 ~g----~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 314 GG----KRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT 387 (641)
T ss_pred CC----cccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc
Confidence 11 1145889999 8999999999999999999986422 12 334456766 8999999999999999999999
Q ss_pred EEEEEccCCe-EEeEEecc-ccCcEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCceeeEEeeccccceeEEEee
Q 014114 282 LASVDIRTGK-LLGCFIGK-CSGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 282 v~iwd~~~~~-~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 353 (430)
+++||++..+ ++....+- ..-+-+.++|||+.++|++|. ..|.+.+||..+.+.++.+.+. ...|..+.
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---~aSvv~~~ 464 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---TASVVRCL 464 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---CceEEEEe
Confidence 9999998754 45444332 133567889999999999985 3468999999999999986544 34468899
Q ss_pred ecCCcce-eeecCCCcEEEecCC
Q 014114 354 FADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 354 ~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
|+|.=.. ++++.||.++||-..
T Consensus 465 WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ecchhhheeeecCCCceEEEECc
Confidence 9998665 888899999986443
No 91
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.1e-25 Score=210.17 Aligned_cols=260 Identities=13% Similarity=0.072 Sum_probs=188.9
Q ss_pred EEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccC
Q 014114 70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES 149 (430)
Q Consensus 70 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~ 149 (430)
.|+.++.|++|+......+..+.+|. +.|.++.|.+.. +..|++++.||.++||++.........
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~--------~~V~~lafsP~~-------~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHT--------SSILDLQFNPCF-------SEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCC--------CCEEEEEEcCCC-------CCEEEEEeCCCeEEEEECCCCCccccc
Confidence 36678899999987666666666544 689999887632 248999999999999998643211000
Q ss_pred CcceeeEEeeccCCceEEEEEcCCCCE-EEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC
Q 014114 150 SCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (430)
Q Consensus 150 ~~~~i~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (430)
....+..+. .|...|.+++|+|++.. |++++.|++|++||+.+++.+..+..+ ..|.+++| +|++.
T Consensus 114 i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~----------~~V~Slsw--spdG~ 180 (568)
T PTZ00420 114 IKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKW--NIKGN 180 (568)
T ss_pred cccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEE--CCCCC
Confidence 011222333 57789999999998875 568999999999999998877666432 45899999 89999
Q ss_pred EEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEE-----EeeCCCCEEEEEcCCC----CEEEEEccC-CeEEeEEec
Q 014114 229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-----AEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIG 298 (430)
Q Consensus 229 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~-----~~s~~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~ 298 (430)
+|++++.|+.|++||+++++ .+..+.+|.+.+.+. .|++++.+|++++.|+ .|+|||++. .+++..+..
T Consensus 181 lLat~s~D~~IrIwD~Rsg~-~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQE-IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred EEEEEecCCEEEEEECCCCc-EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 99999999999999999866 477888898765433 3458888999887664 699999985 556655443
Q ss_pred cc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 299 KC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 299 ~~-~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+. .+.+......+++.++++|+.|+.|++|++..+.. ..+. .........+++|.|....
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~-~~~s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVN-EYKSCSPFRSFGFLPKQIC 320 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eeec-ccccCCCccceEEcccccc
Confidence 21 33344444456688999999999999999987643 3321 2223344678899997654
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.5e-28 Score=197.83 Aligned_cols=271 Identities=17% Similarity=0.231 Sum_probs=222.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhhee--------cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVER--------WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
..|++|+.||.|-+||..++ ++... |-.++.+ +++++| +.|...||+|+.||.|+||.+.+|+
T Consensus 226 qyLvsgSvDGFiEVWny~~G-----KlrKDLkYQAqd~fMMmd~a--Vlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTG-----KLRKDLKYQAQDNFMMMDDA--VLCISF--SRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred ceEeeccccceeeeehhccc-----hhhhhhhhhhhcceeecccc--eEEEee--cccHHHhhccCcCCcEEEEEEecch
Confidence 56899999999999999876 44433 3335666 455555 5577899999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
++..+.. +|...++|+.+..... .+++++.|.++++.-+..+. .++-++ .|...|.
T Consensus 297 ClRrFdr-------AHtkGvt~l~FSrD~S--------qiLS~sfD~tvRiHGlKSGK--------~LKEfr-GHsSyvn 352 (508)
T KOG0275|consen 297 CLRRFDR-------AHTKGVTCLSFSRDNS--------QILSASFDQTVRIHGLKSGK--------CLKEFR-GHSSYVN 352 (508)
T ss_pred HHHHhhh-------hhccCeeEEEEccCcc--------hhhcccccceEEEeccccch--------hHHHhc-Ccccccc
Confidence 9999874 3447899999877444 89999999999998876543 444444 5778899
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
...|.++|..+++++.||+|++|+..+.+++.+++..... ..|+.+-.. +.+...++++....+|++-++..
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-------~~vnsv~~~-PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-------YPVNSVILL-PKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------ccceeEEEc-CCCCceEEEEcCCCeEEEEeccc
Confidence 9999999999999999999999999999999888765422 446666665 45677899999999999999875
Q ss_pred CCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 247 QRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 247 ~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
+ .++.+.. ..+...+..++|.|.++++.+.|+.++.|...+|++..++..| ...|..++-+|..+.|++-++||
T Consensus 425 -Q-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 425 -Q-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred -e-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCcccchhhhhcccc
Confidence 3 4666653 2345666778999999999999999999999999999999998 88999999999999999999999
Q ss_pred eEEEEe
Q 014114 324 YLRFWD 329 (430)
Q Consensus 324 ~v~iwd 329 (430)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999994
No 93
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.4e-26 Score=186.47 Aligned_cols=303 Identities=11% Similarity=0.052 Sum_probs=214.0
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
.+..+.+|...++.++|+. ||++|++++.|+.|+||++.+.... .|..+...-.-+..+.+.+.+...
T Consensus 78 ~~~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~~R~nve~dhpT~V~FapDc~---- 145 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENK----EHRCIRQNVEYDHPTRVVFAPDCK---- 145 (420)
T ss_pred hhhhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhh----hhhHhhccccCCCceEEEECCCcc----
Confidence 3456778988877666654 7889999999999999999763211 111000000112333344444322
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe-----eccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 195 (430)
..++++-....+++|.+....+..... +..-|+ -.|...+..+-...++.+|++++.|..|.+|++. |+
T Consensus 146 ---s~vv~~~~g~~l~vyk~~K~~dG~~~~--~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 146 ---SVVVSVKRGNKLCVYKLVKKTDGSGSH--HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred ---eEEEEEccCCEEEEEEeeecccCCCCc--ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 256666777789999987766543221 111222 2344566667777788999999999999999998 88
Q ss_pred eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC-------cceEEeeecCCCeEEEEeeC
Q 014114 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP 268 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~s~ 268 (430)
.+..+...+ ..-+..+. +|+|+++++++.--.|++|.+--.+ ..+..+.+|.+.|..++|++
T Consensus 220 ~L~~idtnq---------~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 220 LLQSIDTNQ---------SSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred eeeeecccc---------ccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 888776654 22344555 8999999999999999999874321 12567889999999999999
Q ss_pred CCCEEEEEcCCCCEEEEEccCC-------eEEeEE----eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 269 DSFNIYIGNGSGDLASVDIRTG-------KLLGCF----IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 269 ~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~----~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
+.+.+++.+.||.++|||+.-. +.+.+. ... .+....+.++|+|+.|+.+. ...+.+|..++|+...
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYP 366 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccch
Confidence 9999999999999999998531 122222 112 33445899999999887764 4569999999988877
Q ss_pred EEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
.+ .+.| +..|.+++|+++|++++...|..++++...+
T Consensus 367 ~~-e~~h-~~~Is~is~~~~g~~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 367 EL-EDIH-STTISSISYSSDGKYIATCGDRYVRVIRNTP 403 (420)
T ss_pred hH-HHhh-cCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence 63 2334 5557999999999997777888999987554
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.4e-26 Score=193.68 Aligned_cols=270 Identities=11% Similarity=0.140 Sum_probs=220.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+.|..+.++|...+ +.+..|.+|... +..+.+ +|+...+++++.|-.|+||............
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-----q~l~~~~Gh~kk--i~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-- 300 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-----QILATLKGHTKK--ITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTSSR-- 300 (506)
T ss_pred CcceecCCCCceEEEecchh-----hhhhhccCcceE--EEEEEe--ccchhheeecCCcceEEeeccccccCccccc--
Confidence 56899999999999999987 888999999877 555555 6677789999999999999987666444444
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee-ccCCceEEEEEcCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~ 173 (430)
++..+|..+...+... +|++++.++.....++..... +..... ...-.+++.+|+||
T Consensus 301 ------~h~~~V~~ls~h~tge--------YllsAs~d~~w~Fsd~~~g~~--------lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 301 ------PHEEPVTGLSLHPTGE--------YLLSASNDGTWAFSDISSGSQ--------LTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred ------cccccceeeeeccCCc--------EEEEecCCceEEEEEccCCcE--------EEEEeeccccceeEEeeEcCC
Confidence 3446888887777554 999999999999888875432 222221 12345899999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
|..|.+|..|+.|++||+.++..+..+.+|. +.|..++| +.+|.+|++++.|+.|++||+|..+. +..
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n-~kt 426 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISF--SENGYWLATAADDGSVKLWDLRKLKN-FKT 426 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEe--ccCceEEEEEecCCeEEEEEehhhcc-cce
Confidence 9999999999999999999998888888876 78999999 89999999999999999999998553 555
Q ss_pred eeec-CCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc--CCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 254 FDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 254 ~~~~-~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+... ...+.++.|.+.|.+|+.++.|=.|++++-. ...++..+..| .+..+++.|....+++++++.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 5443 3479999999999999999888777777633 45677788887 789999999999999999999999988864
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=186.64 Aligned_cols=269 Identities=19% Similarity=0.196 Sum_probs=206.2
Q ss_pred CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCce
Q 014114 47 DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.++..+..++|++ . ...+|++|+.||+||+|+++. |..+.... ..+..++.+++|.+... .
T Consensus 25 pP~DsIS~l~FSP--~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~Wsddgs--------k 86 (347)
T KOG0647|consen 25 PPEDSISALAFSP--Q-ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGS--------K 86 (347)
T ss_pred CcccchheeEecc--c-cCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCc--------e
Confidence 3566766666665 2 445777999999999999976 34433211 13457999999987544 9
Q ss_pred EEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC--EEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 126 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
+++++.|+.+++|++..... .... .|.++|.++.|-+... .|++|+.|.+|+.||++....+.++..+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~---------~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQV---------SQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred EEeeccCCceEEEEccCCCe---------eeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence 99999999999999986532 1222 4678999999976544 8999999999999999998888887765
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee-ecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
..+.++.. ...+++++..++.|.+|+++.+........ .-.-.++||+..++....+.|+-+|.+
T Consensus 157 ----------eRvYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 157 ----------ERVYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred ----------ceeeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 55776665 456899999999999999986443222221 123468999999999888999999999
Q ss_pred EEEEccCC--eEEeEEeccc--------cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEe
Q 014114 283 ASVDIRTG--KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 283 ~iwd~~~~--~~~~~~~~~~--------~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~ 352 (430)
.|..+..+ +.-++|+.|. -..|++|+|+|.-..|+|++.||++.+||-.....+.. .+.+ ...|++.
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~--s~~~-~qpItcc 299 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT--SETH-PQPITCC 299 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc--cCcC-CCcccee
Confidence 99988876 4455666663 13588899999989999999999999999887777766 3445 4557999
Q ss_pred eecCCcce
Q 014114 353 AFADKEVA 360 (430)
Q Consensus 353 ~~s~~g~~ 360 (430)
+|+.+|.+
T Consensus 300 ~fn~~G~i 307 (347)
T KOG0647|consen 300 SFNRNGSI 307 (347)
T ss_pred EecCCCCE
Confidence 99999999
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-24 Score=169.86 Aligned_cols=292 Identities=14% Similarity=0.156 Sum_probs=218.3
Q ss_pred EEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCC---------CCCCCCceEEEEeeccCccccccCC
Q 014114 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG---------AQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
.+-++.| +|.|.+.++|+...+++|..+..-..+ ..+|.... ...+.+.|.|.+|.+...
T Consensus 34 airav~f--hp~g~lyavgsnskt~ric~yp~l~~~--r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge------- 102 (350)
T KOG0641|consen 34 AIRAVAF--HPAGGLYAVGSNSKTFRICAYPALIDL--RHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE------- 102 (350)
T ss_pred heeeEEe--cCCCceEEeccCCceEEEEccccccCc--ccccccccCCCeEEeeeccccCccEEEEEecCccC-------
Confidence 3556666 889999999999999999876432111 11111110 013557888988877444
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC----CCCEEEEec-CCCeEEEEECCCCceee
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI----SEKFSLFGG-KGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~v~iwd~~~~~~~~ 198 (430)
.+++++.|..+++..+..........+ .-++ .|.+.|..++|-. .+..|++++ .|..|++-|...++..+
T Consensus 103 -liatgsndk~ik~l~fn~dt~~~~g~d---le~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 103 -LIATGSNDKTIKVLPFNADTCNATGHD---LEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred -eEEecCCCceEEEEecccccccccCcc---eeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 899999999999987654332211222 2233 3678899999953 345677654 47789999999999999
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--c-----CCCeEEEEeeCCCC
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R-----ETPIKAVAEEPDSF 271 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~ 271 (430)
.+.+|..+ |.++- +-++-+|++|+.|.+|++||++-..+ +..+.. | .+.|.+++..|.|+
T Consensus 178 a~sghtgh---------ilaly---swn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 178 ALSGHTGH---------ILALY---SWNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred eecCCccc---------EEEEE---EecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcc
Confidence 99988744 44432 33788999999999999999997553 555432 2 36799999999999
Q ss_pred EEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEEeeccccceeE
Q 014114 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVFLKQHLNEVV 349 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~i 349 (430)
+|++|-.|....+||++.++.++.+..| ...|.++.|+|...++++++.|..|++-|+... ..+..+....|.+. +
T Consensus 245 ll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-~ 322 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-A 322 (350)
T ss_pred eeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-e
Confidence 9999999999999999999999999998 999999999999999999999999999998631 22222224456444 4
Q ss_pred EEeeecCCcce-eeecCCCcEEEecCC
Q 014114 350 FDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 350 ~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
..+.|+|..-. ++.+.|.++.+|..+
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 77899998776 999999999999875
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1e-25 Score=184.23 Aligned_cols=264 Identities=16% Similarity=0.175 Sum_probs=205.4
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+..+.| +|.++.|++++.||.+++||.....+...++. ..++.+.++.+. ..+++++.||
T Consensus 16 IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~---------~~plL~c~F~d~---------~~~~~G~~dg 75 (323)
T KOG1036|consen 16 ISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH---------GAPLLDCAFADE---------STIVTGGLDG 75 (323)
T ss_pred eeeEEE--cCcCCcEEEEeccCcEEEEeccchhhhhheec---------CCceeeeeccCC---------ceEEEeccCc
Confidence 555666 46677899999999999999987765555543 347887777652 3799999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.++.+|+...+.. .-..|...|.|+.+++....+++|+.|++|++||.+.......+...
T Consensus 76 ~vr~~Dln~~~~~----------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---------- 135 (323)
T KOG1036|consen 76 QVRRYDLNTGNED----------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---------- 135 (323)
T ss_pred eEEEEEecCCcce----------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC----------
Confidence 9999999865532 11246789999999998899999999999999999875554444432
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee-ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC--
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-- 290 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-- 290 (430)
..|.++.. .++.|++|+.+..|.+||+++...+.+... .-...++||++-|++.-+++++-||.|.+=.+...
T Consensus 136 kkVy~~~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 136 KKVYCMDV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred ceEEEEec----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH
Confidence 45777776 688999999999999999998665442221 23457999999999889999999999887655544
Q ss_pred --eEEeEEeccc--------cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 291 --KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 291 --~~~~~~~~~~--------~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+..+.|+.|. --+|++|+|+|-...|+||+.||.|.+||+.+.+.+.. +... ...|..++|+.||..
T Consensus 212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q--~~~~-~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ--LAKY-ETSISSLSFSMDGSL 288 (323)
T ss_pred HhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh--ccCC-CCceEEEEeccCCCe
Confidence 3455666662 23899999999999999999999999999999998887 4434 333699999999999
Q ss_pred -eeec
Q 014114 361 -NAAA 364 (430)
Q Consensus 361 -~~~~ 364 (430)
++++
T Consensus 289 LAia~ 293 (323)
T KOG1036|consen 289 LAIAS 293 (323)
T ss_pred EEEEe
Confidence 5443
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.7e-26 Score=193.88 Aligned_cols=296 Identities=19% Similarity=0.156 Sum_probs=230.4
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee-eeeee------cC-CCCCC--CCCCceEEEEe
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISN------AG-DSGAQ--PEDDGIVGLHL 111 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~------~~-~~~~~--~~~~~i~~~~~ 111 (430)
...+..|..++.++++ +|+++++++++.+|+|.=|++.+++.. ..++. |. +.... .|.+.+.+++.
T Consensus 135 ~~~~~~H~~s~~~val----s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVAL----SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEe----eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 4566678888555555 557779999999999999999998855 22222 11 11111 45567778888
Q ss_pred eccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 014114 112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 191 (430)
.+... +|++++.|..+.||+..... .++.|. .|.+.|.+++|-.....|++++.|+.|++|++
T Consensus 211 S~Dgk--------ylatgg~d~~v~Iw~~~t~e--------hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 211 SSDGK--------YLATGGRDRHVQIWDCDTLE--------HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred cCCCc--------EEEecCCCceEEEecCcccc--------hhhccc-ccccceeeeeeecCccceeeeecCCceEEEeh
Confidence 77444 99999999999999987654 445555 67899999999988899999999999999999
Q ss_pred CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCC
Q 014114 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF 271 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 271 (430)
.....+.++.+|+ +.|..+.. ...++.+.+|+.|+++++|++.. .....+.+|.+.+-|++|-. ..
T Consensus 274 ~~~s~vetlyGHq---------d~v~~Ida--L~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In-~~ 339 (479)
T KOG0299|consen 274 DQLSYVETLYGHQ---------DGVLGIDA--LSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN-DE 339 (479)
T ss_pred hHhHHHHHHhCCc---------cceeeech--hcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec-cc
Confidence 9988888888887 55777776 34566777777999999999954 23667888989999999964 45
Q ss_pred EEEEEcCCCCEEEEEccCCeEEeEEeccc-----------cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----cee
Q 014114 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR----QLL 336 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~----~~~ 336 (430)
.|++|+.+|.|.+|++.+.+++++....| ...|++++..|...++++|+.+|.|++|-+..+ +++
T Consensus 340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l 419 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL 419 (479)
T ss_pred ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence 89999999999999999999888765321 127899999999999999999999999999877 334
Q ss_pred eEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
..+ ...+.|++++|+++|.. +..+....+--|-...
T Consensus 420 ~~l----s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 420 YSL----SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred eec----ccccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 443 24556899999999996 4555566666666554
No 99
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=207.02 Aligned_cols=289 Identities=14% Similarity=0.133 Sum_probs=218.6
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcc-----------h---------hh--eecCC--------CCcceEEEEeccCC
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVP-----------K---------VV--ERWGD--------PHSSKCVLAASIDD 61 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~-----------~---------~~--~~~~~--------~~~~~~~~~~~~~~ 61 (430)
.|+..++|++.||+||+|++...-.+.. + .. ...+. -+....+-+++.
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v-- 467 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV-- 467 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--
Confidence 4566799999999999999986211100 0 00 00000 011222344555
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|+|++||+|..-|.|+||++..-+.+..+..|. ..|.|+.+..... ....|++++.|..|+|+|+.
T Consensus 468 Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe--------sEilcLeyS~p~~-----~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 468 SPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE--------SEILCLEYSFPVL-----TNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CCCcceecccCccCceEEEEehhhhhhhheeccc--------ceeEEEeecCchh-----hhHhhhhccCCceEEEEecc
Confidence 7899999999999999999998888877777754 6899998876554 34589999999999999987
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCC--CEEEEecCCCeEEEEECCC-CceeeeecCCCCCCCCcccCcceeE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
..-... ...+ .|...|+++.|..++ ..+++++.|..|. |+... ......+..+... .....+..
T Consensus 535 rny~l~-------qtld-~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t----~~ktTlYD 601 (1080)
T KOG1408|consen 535 RNYDLV-------QTLD-GHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQT----LSKTTLYD 601 (1080)
T ss_pred cccchh-------hhhc-ccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccc----cccceEEE
Confidence 655322 2222 577899999998876 6788899997665 44332 1111112111110 01145788
Q ss_pred eEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeE
Q 014114 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 295 (430)
++. .|..+++++++.|..|+|||+..+++ .+.|++ |++....+...|.|.||++.+.|.++.++|..+++++..
T Consensus 602 m~V--dp~~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 602 MAV--DPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eee--CCCcceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 888 88999999999999999999999875 777765 667788899999999999999999999999999999999
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 296 ~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+.+| ...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 679 m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 679 MTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 9999 99999999999999999999999999998753
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=6e-26 Score=194.78 Aligned_cols=239 Identities=18% Similarity=0.192 Sum_probs=184.6
Q ss_pred ceEEEEccCCeeEEEEeeeecccccC---CcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCce---
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAES---SCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK--- 196 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~---~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~--- 196 (430)
..+++.+..+.+.||+....+..... ..-.+++ ..|...-.+++|++ ..-.|++++.|++|++||+.....
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L--~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL--KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK 215 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEE--EeecccccccccccccceeEeeccCCCcEEEEeccccccCCc
Confidence 47777899999999999876543211 1111122 13444567789998 445788999999999999975432
Q ss_pred ----eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC-CCcceEEeeecCCCeEEEEeeCC-C
Q 014114 197 ----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETPIKAVAEEPD-S 270 (430)
Q Consensus 197 ----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~s~~-~ 270 (430)
...+..| ...|..++|+ ..+..+|++++.|+.+.|||+|+ ..++.....+|...|.|++|+|- +
T Consensus 216 ~~~p~~~~~~h---------~~~VeDV~~h-~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 216 VVDPKTIFSGH---------EDVVEDVAWH-PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred cccceEEeecC---------Ccceehhhcc-ccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC
Confidence 2233344 3779999996 34667899999999999999995 34467788899999999999995 4
Q ss_pred CEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcee------------
Q 014114 271 FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLL------------ 336 (430)
Q Consensus 271 ~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~------------ 336 (430)
..||+|+.|++|.+||+|.. ++++++.+| ...|.+|.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred ceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 67889999999999999975 468889998 9999999999965 67899999999999998642111
Q ss_pred eEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
-.|...||... |..+.|+|...+ ++++.|+.+.||....
T Consensus 365 llF~HgGH~~k-V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 365 LLFIHGGHTAK-VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eeEEecCcccc-cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 11336677544 699999999998 8899999999999874
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.2e-26 Score=199.46 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=222.6
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC---ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCc
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
|.+-|+.++++. ..+++++|+. |.|+|||+... ..+..+. ....+..+.+..+++...
T Consensus 418 HGEvVcAvtIS~----~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd------cl~rdnyiRSckL~pdgr-------- 478 (705)
T KOG0639|consen 418 HGEVVCAVTISN----PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD------CLNRDNYIRSCKLLPDGR-------- 478 (705)
T ss_pred cCcEEEEEEecC----CcceeEecCC-CeEEEeeccCCCCCCcccccc------ccCcccceeeeEecCCCc--------
Confidence 556655555544 4467999876 77999998532 1122222 223445778888887554
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 204 (430)
.|++|++..++.|||+..... .|+.--.........++.+|+.+..+++..||.|.|||+.+...++.+++|.
T Consensus 479 tLivGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred eEEeccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 999999999999999975432 2222222334557788999999999999999999999999999999999987
Q ss_pred CCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEE
Q 014114 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 284 (430)
+.+.|+.. +++|..|.+|+.|.+|+.||++.+++ +..... .+.|.++.++|++.+|++|-.++.+.|
T Consensus 552 ---------DGascIdi--s~dGtklWTGGlDntvRcWDlregrq-lqqhdF-~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 552 ---------DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQ-LQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred ---------CCceeEEe--cCCCceeecCCCccceeehhhhhhhh-hhhhhh-hhhheecccCCCccceeeecccCcEEE
Confidence 77899999 89999999999999999999998765 322222 468999999999999999999999999
Q ss_pred EEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee
Q 014114 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~ 363 (430)
... ++...+.+.-| .+-|.++.|.+.|+++++.+.|+.+..|...-|..+.. .+ ..+.|+++..+.|+++ +||
T Consensus 619 lh~-skp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq--sk--E~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 619 LHT-SKPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SK--ESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred Eec-CCccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCccccceee--cc--ccCcceeeeeccCceEEEec
Confidence 887 44555566666 89999999999999999999999999999988887765 22 2344799999999999 999
Q ss_pred cCCCcEEEecC
Q 014114 364 ADAPMLEIQNG 374 (430)
Q Consensus 364 ~~d~~v~vw~~ 374 (430)
+.|....||..
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99988888864
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.2e-25 Score=200.41 Aligned_cols=263 Identities=13% Similarity=0.120 Sum_probs=210.6
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhh--eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVV--ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
++..+++++.||++++|+-..+ ..+ ..+.+|.+-+.. ..++.. .++-.|++|+.|+.|.+|......++..
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~-----~~l~~~~~~~~~g~i~~-~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGK-----QYLETHAFEGPKGFIAN-SICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred CCeEEeecCCCCceeeeeccCc-----ccccceecccCcceeec-cceecc-ccCcceEeecccceEEEEecCCCCchhh
Confidence 3456899999999999998763 222 334555554333 255543 3555699999999999999999999999
Q ss_pred eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+.+|. ..|.++.... ...+++++.|.+++||..... ...|. .|...|++++.
T Consensus 97 LkgH~--------snVC~ls~~~---------~~~~iSgSWD~TakvW~~~~l----------~~~l~-gH~asVWAv~~ 148 (745)
T KOG0301|consen 97 LKGHK--------SNVCSLSIGE---------DGTLISGSWDSTAKVWRIGEL----------VYSLQ-GHTASVWAVAS 148 (745)
T ss_pred hhccc--------cceeeeecCC---------cCceEecccccceEEecchhh----------hcccC-Ccchheeeeee
Confidence 99876 5777776543 235999999999999987532 22234 57889999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 171 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
-|+. .+++|+.|.+|++|.- ++.+.++.+|. +.|..+++. +...|++++.||.|++|++. ++.
T Consensus 149 l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl---~~~~flScsNDg~Ir~w~~~-ge~- 211 (745)
T KOG0301|consen 149 LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVL---DDSHFLSCSNDGSIRLWDLD-GEV- 211 (745)
T ss_pred cCCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEe---cCCCeEeecCCceEEEEecc-Cce-
Confidence 8877 8899999999999975 67778888876 779999995 45679999999999999994 454
Q ss_pred eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+..+.+|+.-|++++..+++..++++++|++++||+.. ++.+.+.-. ...|+++.+-++|. +++|+.||.||||..
T Consensus 212 l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 88899999999999988888899999999999999986 777777654 66899999988886 778888999999986
Q ss_pred C
Q 014114 331 K 331 (430)
Q Consensus 331 ~ 331 (430)
.
T Consensus 288 ~ 288 (745)
T KOG0301|consen 288 D 288 (745)
T ss_pred c
Confidence 5
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-24 Score=176.06 Aligned_cols=270 Identities=14% Similarity=0.161 Sum_probs=210.4
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc--CCeEEEeccCCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~ 92 (430)
..|+++++|..++|||...+ +.+.+...+.-.+....|.. ++ ..++.++. |.+|+..++.+.+.++.+.
T Consensus 27 ~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~~~~~Fth--~~--~~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGVDLACFTH--HS--NTVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred CEEEEecCCCeEEEEEcCCC-----ceeeEeecccccccEEEEec--CC--ceEEEccCCCCCceEEEEeecCceEEEcC
Confidence 57889999999999999987 77777776666655666654 32 23444554 8899999999999999999
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+|. +.|..+...+... .+++++.|.++++||+..... .-+... ..-...+|+|
T Consensus 98 GH~--------~~V~sL~~sP~~d--------~FlS~S~D~tvrLWDlR~~~c--------qg~l~~---~~~pi~AfDp 150 (311)
T KOG1446|consen 98 GHK--------KRVNSLSVSPKDD--------TFLSSSLDKTVRLWDLRVKKC--------QGLLNL---SGRPIAAFDP 150 (311)
T ss_pred CCC--------ceEEEEEecCCCC--------eEEecccCCeEEeeEecCCCC--------ceEEec---CCCcceeECC
Confidence 876 7888888877554 999999999999999984331 111221 2234578999
Q ss_pred CCCEEEEecCCCeEEEEECCCC--ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
+|-++|++...+.|++||++.- .+-.++..... .....+.+.| +|+|++++.++..+.+++.|.-++. .
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------~~~ew~~l~F--S~dGK~iLlsT~~s~~~~lDAf~G~-~ 221 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------DEAEWTDLEF--SPDGKSILLSTNASFIYLLDAFDGT-V 221 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------CccceeeeEE--cCCCCEEEEEeCCCcEEEEEccCCc-E
Confidence 9999999988889999999763 22222222110 1255789999 9999999999999999999999877 4
Q ss_pred eEEeeecCCCe---EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 014114 251 VMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 251 ~~~~~~~~~~i---~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i 327 (430)
...+..+...- -...|+||++++++|+.||+|.+|+++++..+..+.+.+.+++.++.|+|.-.++++++ ..+.+
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~f 299 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVF 299 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEE
Confidence 77777764432 56789999999999999999999999999999999985589999999999887777774 56888
Q ss_pred EeCC
Q 014114 328 WDIK 331 (430)
Q Consensus 328 wd~~ 331 (430)
|=..
T Consensus 300 w~p~ 303 (311)
T KOG1446|consen 300 WLPD 303 (311)
T ss_pred Eecc
Confidence 8554
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.1e-25 Score=209.46 Aligned_cols=284 Identities=13% Similarity=0.113 Sum_probs=221.3
Q ss_pred cceEeec--CCCcEEEEEecCcc-------CCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC
Q 014114 15 LRALTFD--SLGLIKVIEARGED-------GGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 15 ~~l~t~~--~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
.+++||+ .||.++||+...-. ...++.+.+...|.+.+.|+.| +|||+|||+|+.|+.|.||+....
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~----S~dG~~lAsGSDD~~v~iW~~~~~ 101 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF----SPDGSYLASGSDDRLVMIWERAEI 101 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE----CCCCCeEeeccCcceEEEeeeccc
Confidence 6889999 99999999876311 1246667777789999777766 558889999999999999998630
Q ss_pred ------------------ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccc
Q 014114 86 ------------------DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA 147 (430)
Q Consensus 86 ------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~ 147 (430)
+....+. +|...|..+.|.+.. ..+++++.|+.|.||+....
T Consensus 102 ~~~~~fgs~g~~~~vE~wk~~~~l~--------~H~~DV~Dv~Wsp~~--------~~lvS~s~DnsViiwn~~tF---- 161 (942)
T KOG0973|consen 102 GSGTVFGSTGGAKNVESWKVVSILR--------GHDSDVLDVNWSPDD--------SLLVSVSLDNSVIIWNAKTF---- 161 (942)
T ss_pred CCcccccccccccccceeeEEEEEe--------cCCCccceeccCCCc--------cEEEEecccceEEEEccccc----
Confidence 1222222 355677788887644 49999999999999997643
Q ss_pred cCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC
Q 014114 148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 148 ~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (430)
+.+++.+ .|.+.|..+.|+|-|+||++-+.|++|++|++.+-...+.+..+..+... ...+..+.| +|||
T Consensus 162 ----~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~---~T~f~RlSW--SPDG 231 (942)
T KOG0973|consen 162 ----ELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL---TTFFLRLSW--SPDG 231 (942)
T ss_pred ----eeeeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC---cceeeeccc--CCCc
Confidence 2555555 57889999999999999999999999999998876676666655443222 256788899 9999
Q ss_pred CEEEEEeC----CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCC-------------CC----EEEEEcCCCCEEEEE
Q 014114 228 RKFVAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-------------SF----NIYIGNGSGDLASVD 286 (430)
Q Consensus 228 ~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~-------------~~----~l~~~~~dg~v~iwd 286 (430)
.+|++... -.++.|.+-.+.+ .-..+-+|..++.++.|+|. .. .+|+|+.|+.|.||.
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred CeecchhhccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 99998642 2367777765533 46678899999999999881 11 678899999999999
Q ss_pred ccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
....+++.....-....|..++|+|||..|+.+|.||+|.++.++..
T Consensus 311 T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 311 TALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 98888876665444679999999999999999999999999998753
No 105
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=206.96 Aligned_cols=197 Identities=17% Similarity=0.228 Sum_probs=157.0
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGK 182 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 182 (430)
+.|..+.|. .++.|++++.|.++++|++... ..+++|. |...|+|++|+| |.+|+++|+-
T Consensus 370 ~DILDlSWS---------Kn~fLLSSSMDKTVRLWh~~~~--------~CL~~F~--HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 370 ADILDLSWS---------KNNFLLSSSMDKTVRLWHPGRK--------ECLKVFS--HNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred hhheecccc---------cCCeeEeccccccEEeecCCCc--------ceeeEEe--cCCeeEEEEecccCCCcEeeccc
Confidence 356666653 3347888888888888887633 3566664 789999999999 8899999999
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--c---
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R--- 257 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~--- 257 (430)
|+.|+||++...+.+.-...+ ..|++++| .|+|+..++|+.+|.+++|++...+ ++..+.. |
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy--~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLR----------DLITAVCY--SPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKK 497 (712)
T ss_pred ccceEEeecCcCeeEeehhhh----------hhheeEEe--ccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCc
Confidence 999999999988877655443 56999999 8999999999999999999998643 3333221 1
Q ss_pred ---CCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccC-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 258 ---ETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 258 ---~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
...|+.+.|.|.. ..+++.+.|..|+|||.++..++..|++++.. .=....|+.||++|+++++|..|+||+...
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 2379999998754 35777889999999999999999999976432 335678999999999999999999999744
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.2e-25 Score=190.46 Aligned_cols=276 Identities=16% Similarity=0.189 Sum_probs=206.8
Q ss_pred CCCCCC--cceEeecCCCcEEEEEecCccC--Ccchh---h----eec----CCCCcceEEEEeccCCCCCCceEEEEcc
Q 014114 9 CPGCPP--LRALTFDSLGLIKVIEARGEDG--GVPKV---V----ERW----GDPHSSKCVLAASIDDSQNDPLLAVARK 73 (430)
Q Consensus 9 ~~~~p~--~~l~t~~~dg~i~vw~~~~~~~--~~~~~---~----~~~----~~~~~~~~~~~~~~~~~p~g~~l~~g~~ 73 (430)
|...++ .++++++.+|+|.-|++.++.. ++.+. . ..+ ..|-.. +++++. ++||+|||+|+.
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke--il~~av--S~Dgkylatgg~ 222 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE--ILTLAV--SSDGKYLATGGR 222 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce--eEEEEE--cCCCcEEEecCC
Confidence 334444 4899999999999999987531 11110 0 001 134344 556666 779999999999
Q ss_pred CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcce
Q 014114 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~ 153 (430)
|..|.||+..+.+.+..+.+|. +.|.++++..... .+++++.|..+++|+++....
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr--------~~V~~L~fr~gt~--------~lys~s~Drsvkvw~~~~~s~-------- 278 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHR--------GAVSSLAFRKGTS--------ELYSASADRSVKVWSIDQLSY-------- 278 (479)
T ss_pred CceEEEecCcccchhhcccccc--------cceeeeeeecCcc--------ceeeeecCCceEEEehhHhHH--------
Confidence 9999999999999988887765 7899999987555 899999999999999875432
Q ss_pred eeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
+.. ...|...|..+....-++.+-+|+.|+++++|++..-..+ .+.++. +.+-|++|. +...|++|
T Consensus 279 vet-lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~---------~sidcv~~I---n~~HfvsG 344 (479)
T KOG0299|consen 279 VET-LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGE---------GSIDCVAFI---NDEHFVSG 344 (479)
T ss_pred HHH-HhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeCCC---------CCeeeEEEe---cccceeec
Confidence 111 2357788888888777788888889999999999543332 333332 568999996 67789999
Q ss_pred eCCCcEEEEECCCCCcceEEee-ec-----------CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC----eEEeEEe
Q 014114 234 TNDHQVRLYDTSAQRRPVMSFD-FR-----------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFI 297 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~~~~~~-~~-----------~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~ 297 (430)
+.+|.|.+|++...+ |+.... +| +.+|++++..|...++++|+.+|.|++|-+..+ .++..+.
T Consensus 345 SdnG~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred cCCceEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence 999999999998744 555443 22 238999999999999999999999999998876 4566666
Q ss_pred ccccCcEEEEEEcCCCCEEEEE-eCCCeEEEEe
Q 014114 298 GKCSGSIRSIARHPTLPIIASC-GLDSYLRFWD 329 (430)
Q Consensus 298 ~~~~~~v~~i~~s~~~~~l~s~-~~d~~v~iwd 329 (430)
- .+-|++++|+++|++|++| +....+--|-
T Consensus 424 ~--~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 424 L--VGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred c--ccEEEEEEEccCCCEEEEecccccccceee
Confidence 4 6889999999999966655 4444444443
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.4e-25 Score=191.04 Aligned_cols=238 Identities=17% Similarity=0.199 Sum_probs=182.8
Q ss_pred ceEEEEccCCeEEEeccCCCceee----------eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRV----------AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 135 (430)
.++|+++..+.|.|||+....-.. .+.+|. +.-.++.|.... .+.+++++.++.+
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~--------~eg~glsWn~~~-------~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE--------KEGYGLSWNRQQ-------EGTLLSGSDDHTI 202 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec--------cccccccccccc-------ceeEeeccCCCcE
Confidence 577888999999999986532222 333443 222335554433 3599999999999
Q ss_pred EEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCC--CceeeeecCCCCCCCCccc
Q 014114 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 136 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~ 212 (430)
.+|++....... ... ..+.+.-.|...|..++|++ +..++++++.|+.+.|||+++ .+.......|
T Consensus 203 ~lwdi~~~~~~~-~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah--------- 271 (422)
T KOG0264|consen 203 CLWDINAESKED-KVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH--------- 271 (422)
T ss_pred EEEeccccccCC-ccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc---------
Confidence 999997655421 111 22334447889999999999 667888999999999999995 3344444444
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCC-
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG- 290 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~- 290 (430)
...|+|++|. +-++..||+|+.|++|.+||+|+...++..+.+|...|.+|.|+|+. ..|++++.|+.+.+||+..-
T Consensus 272 ~~~vn~~~fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 272 SAEVNCVAFN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCceeEEEeC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 3779999995 33567899999999999999999888999999999999999999975 67888899999999998641
Q ss_pred -------------eEEeEEeccccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCC
Q 014114 291 -------------KLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIK 331 (430)
Q Consensus 291 -------------~~~~~~~~~~~~~v~~i~~s~~~~~-l~s~~~d~~v~iwd~~ 331 (430)
++++.-.|| ...|..+.|+|..++ |++++.|+.+.||...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234555676 999999999998875 6788899999999875
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=6.7e-24 Score=184.32 Aligned_cols=319 Identities=13% Similarity=0.118 Sum_probs=230.6
Q ss_pred EeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCC
Q 014114 18 LTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 18 ~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
+.....|.+..|++.++ ...+....|..++. ..+++++| .++|+ +++|..+|.|.||+..+.+.......|
T Consensus 216 iit~Gk~H~~Fw~~~~~--~l~k~~~~fek~ek-k~Vl~v~F--~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--- 286 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGG--SLVKRQGIFEKREK-KFVLCVTF--LENGD-VITGDSGGNILIWSKGTNRISKQVHAH--- 286 (626)
T ss_pred EEEeCCceEEEEEccCC--ceEEEeeccccccc-eEEEEEEE--cCCCC-EEeecCCceEEEEeCCCceEEeEeeec---
Confidence 34444589999999875 33333445555555 67888888 55565 899999999999998776666555543
Q ss_pred CCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccc---cCCcceee-------------------
Q 014114 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA---ESSCSTVK------------------- 155 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~i~------------------- 155 (430)
++.|.++.... ++.|++++.|..+..|+-...+... ..+.+.+|
T Consensus 287 -----~ggv~~L~~lr---------~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 287 -----DGGVFSLCMLR---------DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred -----CCceEEEEEec---------CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 46888888765 3478889999999999843322110 00011111
Q ss_pred ---------EEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC
Q 014114 156 ---------SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 156 ---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (430)
+--..|....+.++.+|+.+++++++.|+.+++|+ ..+.+++.... .++.|+.| +|.
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----------d~~~~~~f--hps 418 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----------DPAECADF--HPS 418 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----------CceeEeec--cCc
Confidence 11123456788999999999999999999999999 55566655432 56889999 788
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEE
Q 014114 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIR 305 (430)
Q Consensus 227 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~ 305 (430)
+ .++.|+..|...+.|..+ +..+..... +.++++++|+|+|.+||.|+.|+.|+||-+... ........++.++|+
T Consensus 419 g-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 419 G-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred c-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 8 999999999999999998 333433333 789999999999999999999999999988754 344444444468999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE--------------E-eeccccceeEEEeeecCCcce-eeecCCCcE
Q 014114 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA--------------V-FLKQHLNEVVFDSAFADKEVA-NAAADAPML 369 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~--------------~-~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v 369 (430)
.+.|++|+++|.+-+.|-.|..|....-+.+.. + .+.+..+..+..++-+....+ +++.+.|.|
T Consensus 496 hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 999999999999999999999994332211111 0 011222334566677777788 888888999
Q ss_pred EEecCCC
Q 014114 370 EIQNGND 376 (430)
Q Consensus 370 ~vw~~~~ 376 (430)
++|..+-
T Consensus 576 ~lf~yPc 582 (626)
T KOG2106|consen 576 HLFSYPC 582 (626)
T ss_pred EEEcccc
Confidence 9998764
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=187.81 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=222.3
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
+...++||+.+|.|.||+..+. +..++...|++.+..+.+.-++. |++|+.|..|..|| .+-+.+...+
T Consensus 256 engdviTgDS~G~i~Iw~~~~~-----~~~k~~~aH~ggv~~L~~lr~Gt-----llSGgKDRki~~Wd-~~y~k~r~~e 324 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTN-----RISKQVHAHDGGVFSLCMLRDGT-----LLSGGKDRKIILWD-DNYRKLRETE 324 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCc-----eEEeEeeecCCceEEEEEecCcc-----EeecCccceEEecc-cccccccccc
Confidence 4577999999999999999774 44444448999988888777444 77799999999999 3433333332
Q ss_pred ecCCCC-----------------------------C----CCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEE
Q 014114 93 NAGDSG-----------------------------A----QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (430)
Q Consensus 93 ~~~~~~-----------------------------~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~ 139 (430)
....-+ | .++.+....++..+ ..+.+++++.|+.+.+|+
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--------s~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--------SKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--------ChhheeeccCcceEEEcc
Confidence 211000 0 01222222233322 223566666666666665
Q ss_pred eeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEe
Q 014114 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
. .--.|......++.|+.|+|.+ .++.|+..|...+.|.++...+..-.. . .+++++
T Consensus 397 -~-----------~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~---------~~ls~v 453 (626)
T KOG2106|consen 397 -D-----------HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N---------EQLSVV 453 (626)
T ss_pred -C-----------CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C---------CceEEE
Confidence 1 1123444456788999999999 999999999999999998555544333 3 669999
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe-eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEe----
Q 014114 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG---- 294 (430)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~---- 294 (430)
.| +|+|.+||.|+.|+.|++|-+.......... ..+.++|+.+.|++|+++|.+-+.|-.|-.|.....+.+.
T Consensus 454 ~y--sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kD 531 (626)
T KOG2106|consen 454 RY--SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKD 531 (626)
T ss_pred EE--cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecc
Confidence 99 8999999999999999999987654433332 3345899999999999999999999999999543221111
Q ss_pred -------------EEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE-eeccccceeEEEeeecCCcce
Q 014114 295 -------------CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV-FLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 295 -------------~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~ 360 (430)
.+-+.+...|..++-+.+.+++++|...|.|++|...--++.+.+ .+.+| +..+.+++|..+.+.
T Consensus 532 vkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh-s~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 532 VKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH-SSHVTNVAFLCKDSH 610 (626)
T ss_pred eeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc-cceeEEEEEeeCCce
Confidence 111223556777777888899999999999999986433322221 15566 556799999998888
Q ss_pred -eeecCCCcEEEecC
Q 014114 361 -NAAADAPMLEIQNG 374 (430)
Q Consensus 361 -~~~~~d~~v~vw~~ 374 (430)
++.+.|..|..|+.
T Consensus 611 li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 611 LISTGKDTSIMQWRL 625 (626)
T ss_pred EEecCCCceEEEEEe
Confidence 77779999999975
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.7e-23 Score=187.41 Aligned_cols=284 Identities=12% Similarity=0.143 Sum_probs=199.0
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceE-EEEccCCeEEEeccCCCceeeeeeecC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
+++++.||.|++||+.++ +.+..+..+... ..+.+ +|+|+++ +++..++.|++||..+++.+..+..+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~~---~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATL-----EVTRTFPVGQRP---RGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred EEEecCCCEEEEEECCCC-----ceEEEEECCCCC---CceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 678899999999999875 555666544332 23444 6677766 567889999999998888766554321
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceE-EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.+..+.+.+.. ..+ +++..++.+.+|++.... .+.... ....+.+++|+|++
T Consensus 74 ---------~~~~~~~~~~g--------~~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~dg 126 (300)
T TIGR03866 74 ---------DPELFALHPNG--------KILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPDG 126 (300)
T ss_pred ---------CccEEEECCCC--------CEEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCCC
Confidence 22334444322 245 445668999999986422 222222 23456789999999
Q ss_pred CEEEEecCCC-eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE-eCCCcEEEEECCCCCcceE
Q 014114 175 KFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~ 252 (430)
.+++++..++ .+.+||..+++....+... .....+.| +|++.+|+++ ..++.|++||+.+++. +.
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~--s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~ 193 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEF--TADGKELWVSSEIGGTVSVIDVATRKV-IK 193 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEE--CCCCCEEEEEcCCCCEEEEEEcCccee-ee
Confidence 9999888765 5777899887765543321 23466788 8899888554 4689999999998653 44
Q ss_pred EeeecC-------CCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEE-eCCC
Q 014114 253 SFDFRE-------TPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDS 323 (430)
Q Consensus 253 ~~~~~~-------~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~~d~ 323 (430)
.+..+. .....++|+|++++++++ ..++.|.+||+++++.+..+.. ...+.+++|+|++++|+++ +.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~ 271 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSN 271 (300)
T ss_pred eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCC
Confidence 443221 123468899999986554 4567899999998887766543 4578999999999999876 4689
Q ss_pred eEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
.|.+||+.+++.+..+.+. ...+.++|+|
T Consensus 272 ~i~v~d~~~~~~~~~~~~~----~~~~~~~~~~ 300 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIKVG----RLPWGVVVRP 300 (300)
T ss_pred eEEEEECCCCcEEEEEEcc----cccceeEeCC
Confidence 9999999999999986542 2247777765
No 111
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=5.7e-25 Score=185.38 Aligned_cols=274 Identities=36% Similarity=0.593 Sum_probs=213.0
Q ss_pred EeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCee
Q 014114 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 135 (430)
.++|...+..+.|...+.+..+.........+...+.... ..+....+|..++. .++.|++|..+|.+
T Consensus 60 ~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~--~~~l~~~~I~gl~~----------~dg~Litc~~sG~l 127 (412)
T KOG3881|consen 60 SLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK--TVSLGTKSIKGLKL----------ADGTLITCVSSGNL 127 (412)
T ss_pred hheeecCCceeEeeccccCcccccccccCCcccccccccc--ccccccccccchhh----------cCCEEEEEecCCcE
Confidence 3334334455555555466666666665554443331100 01123345655555 34699999999999
Q ss_pred EEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCC--CeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 136 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
.+|...+.... ...+..|. .+..+..+.-++.. ..+++|+.. +.+.+||+.+.+.++..++.....+++..
T Consensus 128 ~~~~~k~~d~h----ss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV 201 (412)
T KOG3881|consen 128 QVRHDKSGDLH----SSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV 201 (412)
T ss_pred EEEeccCCccc----cccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence 99998754422 12333333 34566667666644 456669988 88999999999999999999999999999
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
+.|++++.|.+......|++++.-+.+++||.+.+++|+..+...+.+|+++...|++++|++|..-+.+..||++.++.
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 99999999963333789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeE-EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccccee
Q 014114 293 LGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 293 ~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
+.. +.+. .+.|++|..+|..++|++++.|+.|||+|+.+.++++.+|+..+...+
T Consensus 282 ~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i 337 (412)
T KOG3881|consen 282 LGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI 337 (412)
T ss_pred eccccCCc-cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence 877 6666 999999999999999999999999999999999999998887774443
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-25 Score=190.01 Aligned_cols=293 Identities=15% Similarity=0.117 Sum_probs=221.5
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEE
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (430)
|.....+.++.| +|..++|++++.||+++||.+ +|+.-..++... -..-+|.+..+.+... ..++
T Consensus 210 ~ps~~~I~sv~F--Hp~~plllvaG~d~~lrifqv-DGk~N~~lqS~~-----l~~fPi~~a~f~p~G~-------~~i~ 274 (514)
T KOG2055|consen 210 HPSHGGITSVQF--HPTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIH-----LEKFPIQKAEFAPNGH-------SVIF 274 (514)
T ss_pred CcCcCCceEEEe--cCCCceEEEecCCCcEEEEEe-cCccChhheeee-----eccCccceeeecCCCc-------eEEE
Confidence 433334667777 888899999999999999998 444333332211 0123677777766332 3789
Q ss_pred EEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC
Q 014114 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 128 ~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 207 (430)
+++.....+.||+...... .+..........+..+.+++++++|+..+..|.|.+....+++.+..++..
T Consensus 275 ~s~rrky~ysyDle~ak~~------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---- 344 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---- 344 (514)
T ss_pred ecccceEEEEeeccccccc------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec----
Confidence 9999999999999654321 111111111345677888999999999999999999999999998888764
Q ss_pred CCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC-CCeEEEEeeCCCCEEEEEcCCCCEEEEE
Q 014114 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~v~iwd 286 (430)
+.|..++| +.+++.|++++.+|.|.+||++... ++..+.... -.-++++.++++.+||+|+..|.|.|||
T Consensus 345 ------G~v~~~~f--sSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 345 ------GVVSDFTF--SSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred ------cEEeeEEE--ecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 66899999 7889999999999999999999864 466665422 2345677889999999999999999999
Q ss_pred ccC------CeEEeEEeccccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 287 IRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 287 ~~~------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
..+ .+++..+..- ...|++++|+|++++||.+| .+..+++-.+.+......++.....-+.++|++|+|.|
T Consensus 416 ~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred cchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 653 4567666665 77899999999999988877 56789999998877776644333333348999999988
Q ss_pred ce-eeecCCCcEEEecCC
Q 014114 359 VA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 359 ~~-~~~~~d~~v~vw~~~ 375 (430)
.+ +.|..+|.+.+|.+.
T Consensus 495 G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEeecCCCceeeEeec
Confidence 88 899999999999764
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.4e-27 Score=211.63 Aligned_cols=258 Identities=20% Similarity=0.274 Sum_probs=211.0
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
.+++.+...-.+++||.... ..|. ..+.++..-... ..+++|+.+..+.+|.+.....
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~------~~hs--------aav~~lk~~~s~--------r~~~~Gg~~~k~~L~~i~kp~~ 62 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREF------VAHS--------AAVGCLKIRKSS--------RSLVTGGEDEKVNLWAIGKPNA 62 (825)
T ss_pred cccceeeeeeccccccchhh------hhhh--------hhhceeeeeccc--------eeeccCCCceeeccccccCCch
Confidence 34566666667888886322 1122 345556553322 3889999999999998764432
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
. .-+. .|..+|.++.|++...+|+.|+.+|+|++||+..++.++++.+|. ..+.++.| +|
T Consensus 63 i--------~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------~~~~sv~f--~P 122 (825)
T KOG0267|consen 63 I--------TSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------LNITSVDF--HP 122 (825)
T ss_pred h--------heee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc---------cCcceeee--cc
Confidence 2 1223 578999999999999999999999999999999999999888876 55888889 89
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
-+.+++.|+.|+.+.+||.+... +...+.+|...+.++.|+|+|++++.|+.|..++|||+..|+.+..|..| .+.+.
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~ 200 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQ 200 (825)
T ss_pred ceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-ccccc
Confidence 99999999999999999999755 58889999999999999999999999999999999999999999999998 99999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEE
Q 014114 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~ 370 (430)
++.|+|..-++++|+.|++|++||+++.+.+.. ....... |.+++|+|++..+..+..-.+.
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s--~~~~~~~-v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS--GKPETDG-VRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeec--cCCccCC-ceeeeecCCceeeecCchhhhh
Confidence 999999999999999999999999999888877 4444334 6999999999994444333333
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-23 Score=189.93 Aligned_cols=332 Identities=14% Similarity=0.154 Sum_probs=230.5
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecC
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
.+++++.++.+.||+........ .+...+....... +.++.. .+.--+-++.|+.+|.+.||++.+++.+.+++.+.
T Consensus 126 ~lia~d~~~~l~vw~~s~~~~e~-~l~~~~~~~~~~~-Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~ 202 (910)
T KOG1539|consen 126 HLIAVDISNILFVWKTSSIQEEL-YLQSTFLKVEGDF-ITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF 202 (910)
T ss_pred eEEEEEccCcEEEEEeccccccc-cccceeeeccCCc-eeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence 57889999999999998731111 1111222212221 333321 01122458999999999999999999999998744
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 175 (430)
+.|+++.-.+.-. .++.|..+|+|.++++.+.. .+..+... .+.|++++|..||+
T Consensus 203 --------s~IT~ieqsPaLD--------VVaiG~~~G~ViifNlK~dk--------il~sFk~d-~g~VtslSFrtDG~ 257 (910)
T KOG1539|consen 203 --------SRITAIEQSPALD--------VVAIGLENGTVIIFNLKFDK--------ILMSFKQD-WGRVTSLSFRTDGN 257 (910)
T ss_pred --------cceeEeccCCcce--------EEEEeccCceEEEEEcccCc--------EEEEEEcc-ccceeEEEeccCCC
Confidence 4676665544333 89999999999999998644 55555532 48999999999887
Q ss_pred E-EEEecCCCeEEEEECCCCceeeeecC-CCCC-------------------------------------CCCcccCcce
Q 014114 176 F-SLFGGKGVEVNVWDLDKCEKIWTAKP-PPKN-------------------------------------SLGIFTPTWF 216 (430)
Q Consensus 176 ~-l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~-------------------------------------~~~~~~~~~v 216 (430)
. +++|+..|.+.+||++..+.+..+.. |... .....|..+.
T Consensus 258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 5 55667779999999998776655542 2100 0111233344
Q ss_pred eEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC---------------------------cce------------------
Q 014114 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------RPV------------------ 251 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------------~~~------------------ 251 (430)
.++.|. ...+..+.+++.|++++.+++.... .++
T Consensus 338 ~~irfy-~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 338 SCIRFY-GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred hheeee-ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 445554 3445566666666655555432100 000
Q ss_pred --------------------EEeee-----cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE---eccccCc
Q 014114 252 --------------------MSFDF-----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF---IGKCSGS 303 (430)
Q Consensus 252 --------------------~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~~ 303 (430)
..+.. -...+++++.++.|++.+.|...|.|.+|++++|-....| ..| ..+
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-~~~ 495 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-KGE 495 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-cCc
Confidence 00000 1146788999999999999999999999999999988888 466 999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE---------------------------------------eeccc
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV---------------------------------------FLKQH 344 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---------------------------------------~~~~~ 344 (430)
|++++....++.+++++.+|.+.+||..+..++..+ .+.+|
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 999999988999999999999999998876533221 13356
Q ss_pred cceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 345 LNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 345 ~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
. ..|++++|||||++ ++++.|++|++||.....
T Consensus 576 ~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 576 G-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred c-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 4 44699999999999 999999999999988643
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9e-25 Score=188.03 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=209.5
Q ss_pred EccC-CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCeeEEEEeeeeccccc
Q 014114 71 ARKN-GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAE 148 (430)
Q Consensus 71 g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~v~~~~~~~~~~~ 148 (430)
++.| ..+.+||+.+|.....+++-... .-.++..... .+++++ ...-.+.+|.+......
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a-------~~~sl~~l~~---------~yllsaq~~rp~l~vw~i~k~~~~-- 74 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLA-------QAASLTALNN---------EYLLSAQLKRPLLHVWEILKKDQV-- 74 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccc-------cchhhhhhch---------hheeeecccCccccccccCchhhh--
Confidence 4444 44999999999998888772110 1111222221 134444 44456888887543311
Q ss_pred CCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC
Q 014114 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (430)
Q Consensus 149 ~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (430)
. . ...-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|- ..|+++.| +.|+.
T Consensus 75 -----~-q-~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---------Q~ITcL~f--s~dgs 136 (476)
T KOG0646|consen 75 -----V-Q-YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---------QSITCLKF--SDDGS 136 (476)
T ss_pred -----h-h-hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---------cceeEEEE--eCCCc
Confidence 1 1 12236889999999999999988899999999999999998887764 66999999 89999
Q ss_pred EEEEEeCCCcEEEEECCC--------CCcceEEeeecCCCeEEEEeeCCC--CEEEEEcCCCCEEEEEccCCeEEeEEec
Q 014114 229 KFVAGTNDHQVRLYDTSA--------QRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 229 ~l~~~~~dg~i~~wd~~~--------~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 298 (430)
+|++|+.||.|.+|.+.. .-.|+..+..|.-+|+.+...+.| .+|++++.|.++++||+..+.++.++.-
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f 216 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF 216 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec
Confidence 999999999999998642 124688899999999999887653 6899999999999999999999988876
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------------eeEEeeccccc-eeEEEeeecCCcce-ee
Q 014114 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL--------------LSAVFLKQHLN-EVVFDSAFADKEVA-NA 362 (430)
Q Consensus 299 ~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~--------------~~~~~~~~~~~-~~i~~~~~s~~g~~-~~ 362 (430)
...+.+++.+|-++.++.|+.+|.|.+.++..... .....+.+|.+ ..|+|++.+-||.+ ++
T Consensus 217 --p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 217 --PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred --CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 68999999999999999999999999998754321 11112567766 35899999999999 99
Q ss_pred ecCCCcEEEecCCCCC
Q 014114 363 AADAPMLEIQNGNDTQ 378 (430)
Q Consensus 363 ~~~d~~v~vw~~~~~~ 378 (430)
|+.||.+.|||....+
T Consensus 295 Gd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eCCCCCEEEEecchHH
Confidence 9999999999987644
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-25 Score=174.14 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=185.2
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCCce--eee
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEK--IWT 199 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~--~~~ 199 (430)
..|++++.|++|+|+.+..+... .+..--..|.++|+.++|.. .|.+|+++++||.|.||.-.+++- .+.
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQS------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCc------eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 48999999999999998765421 22222336889999999964 899999999999999999887732 222
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC--CcceEEeeecCCCeEEEEeeCC---C----
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD---S---- 270 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~s~~---~---- 270 (430)
...| ...|++++|.|+..+-.|++++.||.|.+.+.+.. .........|.-.|++++|.|- |
T Consensus 98 ~~~h---------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 98 HAAH---------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred hhhh---------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 2233 37799999987778889999999999999998764 2223456779999999999885 4
Q ss_pred -------CEEEEEcCCCCEEEEEccCCe--EEeEEeccccCcEEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCceee
Q 014114 271 -------FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 271 -------~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~s~~~----~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
+.|++|+.|..|+||+...++ ...+|.+| .+.|+.++|.|.- .+|++++.||+|.||.........
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 569999999999999998753 44558888 9999999999964 479999999999999765321222
Q ss_pred EEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
...+-.....+++.+.||..|.+ +.++.|+.+.+|..+.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 21122234566899999999999 8888999999998765
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5e-25 Score=180.22 Aligned_cols=282 Identities=15% Similarity=0.172 Sum_probs=215.5
Q ss_pred cceEeecCCCcEEEEEecCc------------cCC-cchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEec
Q 014114 15 LRALTFDSLGLIKVIEARGE------------DGG-VPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd 81 (430)
+-++||+.|-.|+|.|++.. +.. .-.++.++-.|...++.+.| +|...+|++|+.|++|+++|
T Consensus 125 ~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F----HPre~ILiS~srD~tvKlFD 200 (430)
T KOG0640|consen 125 SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF----HPRETILISGSRDNTVKLFD 200 (430)
T ss_pred cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee----cchhheEEeccCCCeEEEEe
Confidence 56889999999999998721 111 11456677778888666655 66677999999999999999
Q ss_pred cCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc
Q 014114 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~ 161 (430)
...-.....++.+. +..++.++.+.+... .++.+..-..+++|+++....-.... -+-+|
T Consensus 201 fsK~saKrA~K~~q------d~~~vrsiSfHPsGe--------fllvgTdHp~~rlYdv~T~Qcfvsan------Pd~qh 260 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQ------DTEPVRSISFHPSGE--------FLLVGTDHPTLRLYDVNTYQCFVSAN------PDDQH 260 (430)
T ss_pred cccHHHHHHHHHhh------ccceeeeEeecCCCc--------eEEEecCCCceeEEeccceeEeeecC------ccccc
Confidence 86544333333322 223788888877444 89999988899999997644211110 13357
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
.+.|.++.+++.+++.++++.||.|++||--+++++.++...... ..|.+..| ..+++++++.+.|..+++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------sevcSa~F--tkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------SEVCSAVF--TKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------ceeeeEEE--ccCCeEEeecCCcceeee
Confidence 789999999999999999999999999999999999888654332 56899999 899999999999999999
Q ss_pred EECCCCCcceEEeeecC-----CCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCE
Q 014114 242 YDTSAQRRPVMSFDFRE-----TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 315 (430)
|.+.+++. +..+.+.. .--+...|+....+++.-. ..+.+.-||.++...+..+...|.+.++.+.-||.+..
T Consensus 332 WEi~t~R~-l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRM-LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCce-EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence 99999774 66665431 1223345666667776654 34679999999988777766545999999999999999
Q ss_pred EEEEeCCCeEEEEeC
Q 014114 316 IASCGLDSYLRFWDI 330 (430)
Q Consensus 316 l~s~~~d~~v~iwd~ 330 (430)
+++++.|..+|+|--
T Consensus 411 FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYR 425 (430)
T ss_pred eeeecccceeeeeee
Confidence 999999999999953
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-25 Score=201.13 Aligned_cols=233 Identities=14% Similarity=0.190 Sum_probs=186.0
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeee
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 200 (430)
..+.+++++..|.|.+|++.... ....+.+|+ .|...+.++.|++ ..++|++|+.||.|++||++......++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~ 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc-----cchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence 45699999999999999998632 123444555 6788999999998 5678899999999999999987776666
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 280 (430)
.+.. ..|..+.|.+. .++.|+++...|.+++||++...++...+.+|.++|.|+.|+|++.+||+|+.|+
T Consensus 173 ~~nS---------ESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 173 RSNS---------ESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred cccc---------hhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence 6533 66999999643 4789999999999999999998888999999999999999999999999999999
Q ss_pred CEEEEEccCCeE--EeEEeccccCcEEEEEEcCCCCE-EEEEe--CCCeEEEEeCCCCceeeEEeeccccceeEEEeeec
Q 014114 281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPI-IASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 281 ~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~-l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s 355 (430)
+|+|||..+.+. +.++.. ..+|.++.|-|..++ |++++ .|-.|+|||++-.-.... .+..| ..+++.++|.
T Consensus 243 ~vkiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~-t~~eH-~~~vt~i~W~ 318 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINT--IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA-TFLEH-TDSVTGIAWD 318 (839)
T ss_pred cEEEEeccCCCccceeEEee--cceeeeeeeccCccchhhhhhccccceEEEEeeccccccce-eeecc-Cccccceecc
Confidence 999999976553 444444 689999999998754 66665 678899999974333222 25567 4456999998
Q ss_pred CCcce--eeecCCCcEEEecC
Q 014114 356 DKEVA--NAAADAPMLEIQNG 374 (430)
Q Consensus 356 ~~g~~--~~~~~d~~v~vw~~ 374 (430)
..... .+++.|++|..-..
T Consensus 319 ~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 319 SGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred CCCceeeEeecCccHHHHhhh
Confidence 74443 88999998865443
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.2e-25 Score=188.26 Aligned_cols=270 Identities=14% Similarity=0.104 Sum_probs=211.0
Q ss_pred CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCC
Q 014114 22 SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP 101 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 101 (430)
..-.|.+|.+... ......---++.+.+++. +|.|.||+.|+..|.|.+|.+.+|.++..+..|.
T Consensus 59 ~rp~l~vw~i~k~-----~~~~q~~v~Pg~v~al~s----~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY------ 123 (476)
T KOG0646|consen 59 KRPLLHVWEILKK-----DQVVQYIVLPGPVHALAS----SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY------ 123 (476)
T ss_pred cCccccccccCch-----hhhhhhcccccceeeeec----CCCceEEEeecccCcEEEEEeccccHHHHHHhhc------
Confidence 3457889988874 222222224555444444 5678899999899999999999999999998876
Q ss_pred CCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccC-CcceeeEEeeccCCceEEEEEcCC--CCEEE
Q 014114 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSL 178 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~ 178 (430)
..|+|+.+..... .+++++.||.+.+|.+...-.+... ...+++.|. .|.-+|+.+...+. ..+|+
T Consensus 124 --Q~ITcL~fs~dgs--------~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 124 --QSITCLKFSDDGS--------HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred --cceeEEEEeCCCc--------EEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEE
Confidence 6899999988544 9999999999999998765443222 345778888 68889999988764 46899
Q ss_pred EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC----------
Q 014114 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------- 248 (430)
Q Consensus 179 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------- 248 (430)
+++.|.++++||+..+..+.++..+ ..+.+++. +|.+..+++|+.+|.|.+.++....
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~fp----------~si~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITFP----------SSIKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred EecCCceEEEEEeccceeeEEEecC----------CcceeEEE--cccccEEEecCCcceEEeeehhcCCcccccccccc
Confidence 9999999999999999998887654 56899999 8999999999999999988875321
Q ss_pred -----cceEEeeecCC--CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe-
Q 014114 249 -----RPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG- 320 (430)
Q Consensus 249 -----~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~- 320 (430)
..+..+.+|.. +|+|++++-||.+|++|+.||.|+|||+.+.++++++... .++|+.+.+.|-.+-.+.+.
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~~~~~~l~~~ 339 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPLERGIILFEH 339 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh-ccccceeEeeccccceecccc
Confidence 12456677877 9999999999999999999999999999999999988754 78999999977654433332
Q ss_pred CCCeEEEEeC
Q 014114 321 LDSYLRFWDI 330 (430)
Q Consensus 321 ~d~~v~iwd~ 330 (430)
....+-.|++
T Consensus 340 ~~ps~~~~~l 349 (476)
T KOG0646|consen 340 KQPSLPNPHL 349 (476)
T ss_pred cCccCCchHh
Confidence 2233444443
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-23 Score=194.63 Aligned_cols=263 Identities=12% Similarity=0.098 Sum_probs=207.2
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC-ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
|..+ ...+++ .|+|++|++++.||.|++|+.... +....+.. +...+.++... .+.|
T Consensus 12 ht~G--~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~----------s~~f 69 (933)
T KOG1274|consen 12 HTGG--LTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--------SGELVSSIACY----------SNHF 69 (933)
T ss_pred ccCc--eEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhhc--------cCceeEEEeec----------ccce
Confidence 5555 455666 778899999999999999997654 32223221 22456555553 3489
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 206 (430)
++++.++++.+|.+.... .++.+..+. -++.+++|+.+|++++.|+.|-.|++.++.+......+++|.
T Consensus 70 ~~~s~~~tv~~y~fps~~-----~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-- 138 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGE-----EDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-- 138 (933)
T ss_pred EEeeccceEEEeeCCCCC-----ccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--
Confidence 999999999999876433 223443333 578999999999999999999999999999998889999887
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-------c-CCCeEEEEeeCCCCEEEEEcC
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------R-ETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~-~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.+|.++.| +|.+++||+.+.||.|++||+.++.. ...+.+ - ...+..++|+|++..+++.+.
T Consensus 139 -------apVl~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 139 -------APVLQLSY--DPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred -------CceeeeeE--cCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence 77999999 89999999999999999999997543 333322 1 346678999999888888899
Q ss_pred CCCEEEEEccCCeEEeEEeccc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC
Q 014114 279 SGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
|+.|++|+...+...+.+...+ ...+..++|+|+|+|||+++.||.|.|||+.+.+. + .....|.+++|.|+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~------~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H------EFKRAVCCEAWKPN 281 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c------cccceeEEEecCCC
Confidence 9999999999999988887542 34499999999999999999999999999987222 1 12344799999998
Q ss_pred cce
Q 014114 358 EVA 360 (430)
Q Consensus 358 g~~ 360 (430)
...
T Consensus 282 ~n~ 284 (933)
T KOG1274|consen 282 ANA 284 (933)
T ss_pred CCe
Confidence 776
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.8e-25 Score=190.75 Aligned_cols=275 Identities=12% Similarity=0.112 Sum_probs=210.5
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeee
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
.|..+++||+. |.|+|||+... +....+..+.......++-.... .|||..|++|+.-.++.|||+..-......
T Consensus 429 ~~trhVyTgGk-gcVKVWdis~p--g~k~PvsqLdcl~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprika 503 (705)
T KOG0639|consen 429 NPTRHVYTGGK-GCVKVWDISQP--GNKSPVSQLDCLNRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred CCcceeEecCC-CeEEEeeccCC--CCCCccccccccCcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhh
Confidence 44566777775 77999999863 22222333333333333444555 789999999999999999999654432222
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
+.-. ..-....+.+.. +....+++..||.|.|||+.... .++.+. .|...+.||.++
T Consensus 504 elts------sapaCyALa~sp--------DakvcFsccsdGnI~vwDLhnq~--------~Vrqfq-GhtDGascIdis 560 (705)
T KOG0639|consen 504 ELTS------SAPACYALAISP--------DAKVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDIS 560 (705)
T ss_pred hcCC------cchhhhhhhcCC--------ccceeeeeccCCcEEEEEcccce--------eeeccc-CCCCCceeEEec
Confidence 2110 001122334433 34489999999999999997533 445555 577889999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
++|..|.+|+-|++|+.||++++..+....-. ..|.++.+ .|.+.+|++|-.++.+.+......+ .
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~--cP~~dWlavGMens~vevlh~skp~--k 626 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGY--CPTGDWLAVGMENSNVEVLHTSKPE--K 626 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheeccc--CCCccceeeecccCcEEEEecCCcc--c
Confidence 99999999999999999999998776543321 56888888 7999999999999999998887644 4
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
..+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..++..+. .++|.++.++.|.++++||+.|....||.+
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 66778899999999999999999999999999999998988877766 789999999999999999999988888865
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.4e-23 Score=169.25 Aligned_cols=293 Identities=9% Similarity=0.052 Sum_probs=216.1
Q ss_pred CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce------eeeeee-cCCCCCCCCCCceEEEEeeccCcccc
Q 014114 47 DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------RVAISN-AGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~------~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.|.+++..+.+.. ..|+|+++|+.||.|.+||+++... +..-.. +.......|.-.|..+.|++..+
T Consensus 41 ~HgGsvNsL~id~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--- 114 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--- 114 (397)
T ss_pred cCCCccceeeecc---ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC---
Confidence 4778877776655 3679999999999999999976431 111111 11111224556788899998755
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCCce
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEK 196 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~ 196 (430)
+.+.+++.|++++|||..... ....|. -.+.|.+-+++| .-.++|+|..+-.|++-|+.+|..
T Consensus 115 ----GmFtssSFDhtlKVWDtnTlQ--------~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 115 ----GMFTSSSFDHTLKVWDTNTLQ--------EAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred ----ceeecccccceEEEeecccce--------eeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 689999999999999987544 333444 357788888888 345788899999999999999999
Q ss_pred eeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceEEe--------------eecCCCe
Q 014114 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETPI 261 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~--------------~~~~~~i 261 (430)
.+.+.+|. +.|.++.| +|... .|++|+.||.|++||++...-++..+ ..|.+.+
T Consensus 181 sH~LsGHr---------~~vlaV~W--sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 181 SHTLSGHR---------DGVLAVEW--SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred eeeecccc---------CceEEEEe--ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 99999987 66999999 56555 57899999999999998642223333 3466789
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE-eEEe--cc--ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-GCFI--GK--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~--~~--~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
..++|+.++.++++.+.|..+++|+...|+-. ..+- .| ..+.-..+. +-+...++---.++.+.++.+-++..+
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~i 328 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFV 328 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEE
Confidence 99999999999999999999999999887532 1111 01 001111122 334445555556789999999999999
Q ss_pred eEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
.. +..| ...+.+.+|.|+-+. .++..|+.+..|-.
T Consensus 329 r~--l~~h-~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 329 RR--LSTH-LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred Ee--eecc-cceeeEEeecCchhhhhccccCCccccccc
Confidence 88 6777 444689999999888 99999999999976
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.1e-23 Score=189.67 Aligned_cols=334 Identities=13% Similarity=0.085 Sum_probs=234.3
Q ss_pred CCcceEeecCCCcEEEEEecCcc-CC---------------cchhh----------eecCCCCcceEEEEeccCCCCCCc
Q 014114 13 PPLRALTFDSLGLIKVIEARGED-GG---------------VPKVV----------ERWGDPHSSKCVLAASIDDSQNDP 66 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~-~~---------------~~~~~----------~~~~~~~~~~~~~~~~~~~~p~g~ 66 (430)
...-|++++.|..||||.+.-+. .. ..... ..+.+|+.- +.++-| +|.+.
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDW--V~sv~W--~p~~~ 280 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDW--VYSVWW--HPEGL 280 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccc--eEEEEE--ccchh
Confidence 45679999999999999986432 01 00000 112356666 455555 77887
Q ss_pred eEEEEccCCeEEEeccCCCceee--eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 67 LLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
.|++++.|.++.||...+..-+. .... ...+ +....+.+..|.++. +.+++-+..|..++|.-....
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRl-Ge~g--g~a~GF~g~lw~~n~--------~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRL-GEVG--GSAGGFWGGLWSPNS--------NVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEe-eccc--ccccceeeEEEcCCC--------CEEEEecccCcEEEEeccCcc
Confidence 89999999999999876542222 2221 0011 222345556666543 489999999999999811000
Q ss_pred ccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.-.....--.|-..|..++|+|.|.+|++.+.|.+-++|-.-..+ .-+++..++.+ ..-++|++|.
T Consensus 350 ------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH------GyDl~c~~~v- 416 (764)
T KOG1063|consen 350 ------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH------GYDLTCLSFV- 416 (764)
T ss_pred ------ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc------cccceeeehc-
Confidence 001111122466789999999999999999999999998654222 22333333322 2347888884
Q ss_pred CCCCCEEEEEeCCCcEEEEECCC----------C---------------------------------C------------
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSA----------Q---------------------------------R------------ 248 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~----------~---------------------------------~------------ 248 (430)
+....|++|.....+++|+... + .
T Consensus 417 -n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 417 -NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred -cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 4466788888888889987521 0 0
Q ss_pred --------------------cceEEeeecCCCeEEEEeeCCCCEEEEEcCCC-----CEEEEEccCCeEEeEEeccccCc
Q 014114 249 --------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 249 --------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
..+..+-+|...|++++.+|+++++|+++... .|++|+..+...++.+.+| .-.
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-sLT 574 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-SLT 574 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-ceE
Confidence 01223346778999999999999999998654 3899999999888899998 999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-E-eeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA-V-FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~-~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
|+.++||||+++|++++.|+++.+|.......... + ..+.| ..+|+++.|+|++.+ +|++.|..|+||..++.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999999999999998754322111 0 04556 667899999999997 99999999999999876
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-23 Score=171.44 Aligned_cols=257 Identities=12% Similarity=0.113 Sum_probs=195.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+.++-||.+++|+.... .+...|. |..+ ++..+|.+ ...+++|+.||.|+.+|++++......
T Consensus 26 ~~LLvssWDgslrlYdv~~~-----~l~~~~~-~~~p--lL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~ig--- 91 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN-----SLKLKFK-HGAP--LLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQIG--- 91 (323)
T ss_pred CcEEEEeccCcEEEEeccch-----hhhhhee-cCCc--eeeeeccC---CceEEEeccCceEEEEEecCCcceeec---
Confidence 56888899999999999874 4444443 5666 66777733 245999999999999999877644332
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.|..++.|+...... +.+++++.|+++++||..... ..........|.++.. .+
T Consensus 92 ------th~~~i~ci~~~~~~--------~~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v--~g 145 (323)
T KOG1036|consen 92 ------THDEGIRCIEYSYEV--------GCVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDV--SG 145 (323)
T ss_pred ------cCCCceEEEEeeccC--------CeEEEcccCccEEEEeccccc----------cccccccCceEEEEec--cC
Confidence 244688888887533 499999999999999987422 1112233457777766 47
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC---cce
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV 251 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~ 251 (430)
+.|++|+.+..|.+||+++...........- .-.+.|+++. |++.=+++++-||.|.+=.+...+ ...
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------kyqtR~v~~~--pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------KYQTRCVALV--PNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccc-------eeEEEEEEEe--cCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 8899999999999999998765443322211 1458899984 567778888999999886665531 124
Q ss_pred EEeeecC---------CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC
Q 014114 252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 252 ~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
..|+.|. .+|.+|+|+|-...|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||.++.
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 5566663 38999999999999999999999999999999999999887 788999999999999999863
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.3e-24 Score=173.78 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=191.0
Q ss_pred ccCCCCCCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC
Q 014114 6 TLECPGCPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 6 ~~~~~~~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
.+.+..|....+++|+.|-+|+|||+... ..+..+-.|.+.++++.|.... ....|++|+.||.|.+|+....
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~-----~qlg~ll~HagsitaL~F~~~~--S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKR-----KQLGILLSHAGSITALKFYPPL--SKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccch-----hhhcceeccccceEEEEecCCc--chhheeeecCCCcEEEEEcCCe
Confidence 34455667778999999999999999986 6677788898887777666533 2337999999999999999999
Q ss_pred ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCce
Q 014114 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
.++..++.|. ..|..+.+.+... .-++.+.|+.++.|++-....+ .+.++. ...
T Consensus 118 ~~~~slK~H~--------~~Vt~lsiHPS~K--------LALsVg~D~~lr~WNLV~Gr~a--------~v~~L~--~~a 171 (362)
T KOG0294|consen 118 ELLKSLKAHK--------GQVTDLSIHPSGK--------LALSVGGDQVLRTWNLVRGRVA--------FVLNLK--NKA 171 (362)
T ss_pred EEeeeecccc--------cccceeEecCCCc--------eEEEEcCCceeeeehhhcCccc--------eeeccC--Ccc
Confidence 9999998866 5688888888655 8889999999999998765432 222332 334
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
..+.|+|.|.+++.+..+ .|-+|.+.+......+..+ ..+.++.|. ++..|++|..|+.|.+||..
T Consensus 172 t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~----------~r~l~~~~l---~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP----------KRILCATFL---DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc----------ccceeeeec---CCceEEEecCCceEEEeccC
Confidence 458999999999988877 5999999887776666543 347777883 78899999999999999999
Q ss_pred CCCcceEEeeecCCCeEEEEe--eCCCCEEEEEcCCCCEEEEEccCC
Q 014114 246 AQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
. ..+...+.+|...|-.+.+ .|++.+|++++.||.|++||++..
T Consensus 238 s-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 238 S-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred C-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8 4468899999999999985 567899999999999999999765
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.4e-23 Score=169.82 Aligned_cols=261 Identities=11% Similarity=0.100 Sum_probs=194.4
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecC
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
-+++++-||+||+|+++......+ .....|+++ ++..+| +.||..+++|+.|+.+++||+.+++. ..+..|
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~---ka~~~~~~P--vL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~H- 112 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVP---KAQQSHDGP--VLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAH- 112 (347)
T ss_pred eEEecccCCceEEEEEecCCcccc---hhhhccCCC--eEEEEE--ccCCceEEeeccCCceEEEEccCCCe-eeeeec-
Confidence 356899999999999986312222 233446666 677777 66788999999999999999999854 444444
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 175 (430)
..++.++.|+..... ..|++|+.|.+++.||..... . +..+.....+.++.. ...
T Consensus 113 -------d~pvkt~~wv~~~~~------~cl~TGSWDKTlKfWD~R~~~--------p--v~t~~LPeRvYa~Dv--~~p 167 (347)
T KOG0647|consen 113 -------DAPVKTCHWVPGMNY------QCLVTGSWDKTLKFWDTRSSN--------P--VATLQLPERVYAADV--LYP 167 (347)
T ss_pred -------ccceeEEEEecCCCc------ceeEecccccceeecccCCCC--------e--eeeeeccceeeehhc--cCc
Confidence 478898999875442 378999999999999987433 2 223333455665544 356
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC-cceEEe
Q 014114 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSF 254 (430)
Q Consensus 176 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~ 254 (430)
+++++..+..|.+|+|+++........... .-.+.|++.+ ++....+.|+-+|.+.+..+..+. ..-..|
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpL-------k~Q~R~va~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPL-------KWQTRCVACF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcc-------cceeeEEEEE--ecCCceEeeeecceEEEEecCCCCccCceeE
Confidence 888899999999999987654433221110 1347788874 566667999999999999888742 224566
Q ss_pred eecC---------CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 255 DFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 255 ~~~~---------~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+.|. .+|.+|+|+|....|++++.||+..+||-.....+.+...| ..+|++..|+.+|.+++-+.
T Consensus 239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEEe
Confidence 6665 25788999999999999999999999999888888888887 99999999999999887663
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.9e-24 Score=168.75 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=177.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.||+|++.|++|||+..... +..+++.++.+|.+++.-++++. ...|.+||+++.||.|.||...+|+-.+...
T Consensus 24 krlATcsSD~tVkIf~v~~n--~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e-- 97 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNN--GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENGRWTKAYE-- 97 (299)
T ss_pred ceeeeecCCccEEEEEEcCC--CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCCchhhhhh--
Confidence 68999999999999999863 33467789999999977666665 6789999999999999999876653211110
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-- 172 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-- 172 (430)
...|...|.+++|.|
T Consensus 98 ---------------------------------------------------------------~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 98 ---------------------------------------------------------------HAAHSASVNSVAWAPHE 114 (299)
T ss_pred ---------------------------------------------------------------hhhhcccceeecccccc
Confidence 013456677777777
Q ss_pred CCCEEEEecCCCeEEEEECCCC-c-ee-eeecCCCCCCCCcccCcceeEeEEeeCCC-C-----------CEEEEEeCCC
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKC-E-KI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-H-----------RKFVAGTNDH 237 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~-~-~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-----------~~l~~~~~dg 237 (430)
-|-.|++++.||.|.+.+.... . .. ..... |+-.|++++|.|..- + +.|++|+.|.
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a---------H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA---------HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhc---------cccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 4568889999999999887653 1 11 11122 335688888853211 2 5799999999
Q ss_pred cEEEEECCCCCc-ceEEeeecCCCeEEEEeeCCC----CEEEEEcCCCCEEEEEccCC--eE-EeEEeccccCcEEEEEE
Q 014114 238 QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG--KL-LGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 238 ~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~~~v~~i~~ 309 (430)
.|+||+...+.= .-..+.+|.+.|+.++|.|.- .+|++++.||+|.||-.+.. +- ...+... ...++.+.|
T Consensus 186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~vSW 264 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSW 264 (299)
T ss_pred ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEEEE
Confidence 999999987431 234588999999999999964 57999999999999987622 11 1122223 678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeC
Q 014114 310 HPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 310 s~~~~~l~s~~~d~~v~iwd~ 330 (430)
|..|.+|+.++.|+.|.+|.-
T Consensus 265 S~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eccccEEEEecCCcEEEEEEe
Confidence 999999999999999999964
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=6.8e-22 Score=176.98 Aligned_cols=268 Identities=11% Similarity=0.081 Sum_probs=191.4
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE-EEEccCCeeEEEEeeeec
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~v~~~~~~~ 144 (430)
.++++++.|+.|.+||+.+++.+..+..+. .+.++.+.+.. ..+ +++..++.+.+|++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---------~~~~l~~~~dg--------~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---------RPRGITLSKDG--------KLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---------CCCceEECCCC--------CEEEEEECCCCeEEEEECCCCc
Confidence 468899999999999999998887776532 23445554422 244 567788999999976432
Q ss_pred ccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+..+. ....+..++|+|+++.++++ ..++.|++||+.+.+.+..+... ..+.+++|
T Consensus 65 --------~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~-- 122 (300)
T TIGR03866 65 --------VIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------VEPEGMAV-- 122 (300)
T ss_pred --------EEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----------CCcceEEE--
Confidence 222222 22345678999999877654 56899999999988777666432 23567888
Q ss_pred CCCCCEEEEEeCCC-cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccc-
Q 014114 224 IDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC- 300 (430)
Q Consensus 224 ~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~- 300 (430)
+|++.+++++..++ .+.+||..+.+. ..... ......+++|+|++++|++++ .++.|++||+.+++.+..+..+.
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 89999999988765 467789887543 33332 234567899999999886554 68999999999998877664320
Q ss_pred -----cCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee-cCCCcEEEe
Q 014114 301 -----SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQ 372 (430)
Q Consensus 301 -----~~~v~~i~~s~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~-~~d~~v~vw 372 (430)
......++|+|++++++. .+.++.+.+||+.+++.+..+. + ...+.+++|+|+|.+ +++ ..++.|.+|
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---V-GQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---e-CCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 112356899999998654 4556789999999888776532 1 223689999999998 554 568999999
Q ss_pred cCCCCC
Q 014114 373 NGNDTQ 378 (430)
Q Consensus 373 ~~~~~~ 378 (430)
|.....
T Consensus 277 d~~~~~ 282 (300)
T TIGR03866 277 DVAALK 282 (300)
T ss_pred ECCCCc
Confidence 988743
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=172.51 Aligned_cols=277 Identities=14% Similarity=0.205 Sum_probs=211.7
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee------
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV------ 89 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~------ 89 (430)
-+.|++.|.+.+||.++.+ +.+.+|.+|.++++++.| ++.+.++++++.|++-.||...-.=.+.
T Consensus 162 i~gtASADhTA~iWs~Esg-----~CL~~Y~GH~GSVNsikf----h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESG-----ACLATYTGHTGSVNSIKF----HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred ceeecccccceeEEeeccc-----cceeeecccccceeeEEe----ccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence 4678899999999999998 899999999999777666 5568899999999999999832110000
Q ss_pred ------ee---eecCC-----------------CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 90 ------AI---SNAGD-----------------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 90 ------~~---~~~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
.. ..+.+ ..+.+|...+.+..|.. ++..+++++.|.+..+|+++.+
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--------gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--------GGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--------CcceeeeeeccccceeeeeccC
Confidence 00 00000 01123444455555555 3448999999999999999875
Q ss_pred cccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeecCCCCCCCCcccCcceeEeEEe
Q 014114 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
. .+.... .|...++.++-+|..+++++.+.|-+.++||++.. ..+..+++|. ..|+++.|.
T Consensus 305 e--------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF~ 366 (481)
T KOG0300|consen 305 E--------VVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVFN 366 (481)
T ss_pred c--------eecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEEe
Confidence 5 233322 56777888888999999999999999999999743 3456677765 779999993
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE-----e
Q 014114 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-----I 297 (430)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-----~ 297 (430)
.+..+++|+.|.+|++||+++.+.++..+.. .+++..++.+..+..|+.--.+..|++||+. |..+..+ .
T Consensus 367 ---~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRq 441 (481)
T KOG0300|consen 367 ---TDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQ 441 (481)
T ss_pred ---cCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCccccc
Confidence 4667999999999999999999988888876 5789999999888888888888899999995 4443333 3
Q ss_pred ccccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC
Q 014114 298 GKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 298 ~~~~~~v~~i~~s~~~~--~l~s~~~d~~v~iwd~~~~ 333 (430)
+| ..-|+|++|..+-. -|++++.|..+.=|.+...
T Consensus 442 gH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 442 GH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cc-ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 66 88899999987653 4889999999999998653
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.3e-23 Score=184.60 Aligned_cols=299 Identities=13% Similarity=0.113 Sum_probs=220.7
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
+...|.+|.+.+.+++. .|.|.+|++|+.||+|+||.+.+|+++..+..- ..|.|++|.+...
T Consensus 392 ~~lvyrGHtg~Vr~iSv----dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~~~---- 454 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISV----DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPLSD---- 454 (733)
T ss_pred eeeeEeccCCeEEEEEe----cCCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCCCC----
Confidence 34567789998666655 456889999999999999999999999988762 3677888876544
Q ss_pred cCCceEEEEccCCeeEEEEeeeeccc--------------ccCCcceeeEEe--------------eccCCceEEEEEcC
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVS--------------AESSCSTVKSWN--------------VCASGTIAFSKVDI 172 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~--------------~~~~~~~i~~~~--------------~~~~~~i~~~~~~~ 172 (430)
..++++..+..+.|.+..++... ....+..+..|. +.|...|..+.|+.
T Consensus 455 ---~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 455 ---LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred ---ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 24444444445666665554211 011223344443 34567899999999
Q ss_pred CCCEEEEecC---CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 173 SEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 173 ~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
.|.||++... ...|.|+++.......-+.... +.|.++.| +|...+|++++. ..|++||+.. +.
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk---------G~vq~v~F--HPs~p~lfVaTq-~~vRiYdL~k-qe 598 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK---------GLVQRVKF--HPSKPYLFVATQ-RSVRIYDLSK-QE 598 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhhcC---------CceeEEEe--cCCCceEEEEec-cceEEEehhH-HH
Confidence 9999998755 3468899987655443332222 56899999 788888888765 5899999987 44
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
.+..+......|.+++.+|.|..|+.|+.|+.+..||+.-. ++.+++..| ...+++|+|++.-+++++|+.||++.||
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEE
Confidence 56666666678999999999999999999999999999755 456666666 9999999999999999999999999998
Q ss_pred eC------CCCc-eeeEEeeccccce---eEEEeeecCCcce-eeecCCCcEEEec
Q 014114 329 DI------KTRQ-LLSAVFLKQHLNE---VVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 329 d~------~~~~-~~~~~~~~~~~~~---~i~~~~~s~~g~~-~~~~~d~~v~vw~ 373 (430)
-- -... .+..-.+.+|... .|..+.|+|...+ ++++.||+|++|.
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 42 1111 2222226676432 2688899999999 9999999999983
No 131
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6e-22 Score=155.27 Aligned_cols=252 Identities=12% Similarity=0.077 Sum_probs=191.4
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc-----ccCCccee-eEEeeccCCceEEEEEcCCCCEE
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-----AESSCSTV-KSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~~~~~~~i-~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
..|..+.+.+... ..+.++...+++|.....-.+. .....-.+ ..-+-.|.+.|.|.+|+|.|++|
T Consensus 33 qairav~fhp~g~--------lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 33 QAIRAVAFHPAGG--------LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred hheeeEEecCCCc--------eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence 4666777766444 7888888888887764322111 00111122 22344577899999999999999
Q ss_pred EEecCCCeEEEEECCCCcee-----eeecCCCCCCCCcccCcceeEeEEeeCC--CCCEEEEEe-CCCcEEEEECCCCCc
Q 014114 178 LFGGKGVEVNVWDLDKCEKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGT-NDHQVRLYDTSAQRR 249 (430)
Q Consensus 178 ~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~-~dg~i~~wd~~~~~~ 249 (430)
++|+.|.+|++..++...+. .++..| .+.|..++|.-.| .+.+|++++ .|..|++-|...++
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmh---------dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~- 174 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMH---------DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ- 174 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeec---------CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-
Confidence 99999999999876543221 222223 3679999997433 345677655 57788888988866
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc------ccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
++..+.+|.+-|.++ ++-++-.+++|+.|.+|++||++-..++.++... ..+.|.+++..|.|++|++|-.|.
T Consensus 175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 588999999988886 4456889999999999999999988888776521 246899999999999999999999
Q ss_pred eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
...+||++.+..++. +..|... |.++.|+|...+ ++++.|..|++-|+...
T Consensus 254 sc~lydirg~r~iq~--f~phsad-ir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQR--FHPHSAD-IRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ceEEEEeeCCceeee--eCCCccc-eeEEEeCCCceEEEEecccceEEEeecccc
Confidence 999999999999999 5566444 699999999999 99999999999888753
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=176.38 Aligned_cols=277 Identities=13% Similarity=0.157 Sum_probs=203.7
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCc-eEEEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.-|++|+.||.++||.+++.- ...++.+.-...+ +-..+| .|+|. .+++++.-..+..||+.+.+....-..
T Consensus 226 plllvaG~d~~lrifqvDGk~---N~~lqS~~l~~fP--i~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKV---NPKLQSIHLEKFP--IQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred ceEEEecCCCcEEEEEecCcc---ChhheeeeeccCc--cceeee--cCCCceEEEecccceEEEEeeccccccccccCC
Confidence 358999999999999998731 1233333333344 344444 66777 889999999999999988765432221
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
.. . .-..+..|.... .++.++..+..|.|.+........ |..+ .-.+.|..++|+.+
T Consensus 299 ~g------~--e~~~~e~FeVSh-----d~~fia~~G~~G~I~lLhakT~el--------i~s~--KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 299 YG------V--EEKSMERFEVSH-----DSNFIAIAGNNGHIHLLHAKTKEL--------ITSF--KIEGVVSDFTFSSD 355 (514)
T ss_pred CC------c--ccchhheeEecC-----CCCeEEEcccCceEEeehhhhhhh--------hhee--eeccEEeeEEEecC
Confidence 11 1 111233333222 445899999999999887654432 2222 23578999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC-----CC
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----QR 248 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~ 248 (430)
++.|++++.+|.|.+||+++..+++.+... +.|....+++++++.+||+|+..|.|.|||..+ ..
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~----------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDD----------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeec----------CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 999999999999999999999998888764 335444555588999999999999999999653 22
Q ss_pred cceEEeeecCCCeEEEEeeCCCCEEEEEc--CCCCEEEEEccCCeEEeEEecc--ccCcEEEEEEcCCCCEEEEEeCCCe
Q 014114 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~d~~ 324 (430)
+|+..+..-...|+++.|+|+.++|+.+| .+..+++-.+.+......++.. .-+.|+|++|+|.+.+||.|..+|.
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 35666665667899999999999998887 4577999998877766666532 1457999999999999999999999
Q ss_pred EEEEeCC
Q 014114 325 LRFWDIK 331 (430)
Q Consensus 325 v~iwd~~ 331 (430)
|.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999874
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=2.5e-22 Score=179.31 Aligned_cols=294 Identities=13% Similarity=0.173 Sum_probs=201.3
Q ss_pred ceEeecCCCcEEEEEecCccCC-cchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeee--ee
Q 014114 16 RALTFDSLGLIKVIEARGEDGG-VPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA--IS 92 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~--~~ 92 (430)
.|+.++++|.|.++|....... ....+..+..|... ++.+.| -|-...|++++.|.+|++||+..+++... +.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~w--apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKW--APGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeecc--CCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 4888999999999999863211 11223556678777 566666 55445789999999999999998887766 44
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc---------ccC----------Ccce
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---------AES----------SCST 153 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---------~~~----------~~~~ 153 (430)
+|. ..+.++++..... ..|++|+.||.+.||++.-.... .+. ....
T Consensus 142 GH~--------~SvkS~cf~~~n~-------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 142 GHT--------GSVKSECFMPTNP-------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred ccc--------cccchhhhccCCC-------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 444 5666666665433 48999999999999998755410 000 1112
Q ss_pred eeEEeeccCCceEE---EEEcCCCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCCCccc--CcceeEeEEeeCCCC
Q 014114 154 VKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFT--PTWFTSAAFLSIDDH 227 (430)
Q Consensus 154 i~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 227 (430)
++.|.. +...|.+ +-+..|...|++++. |+.|++||+++....+.........+.... ...+.++.. +..|
T Consensus 207 ~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l--DssG 283 (720)
T KOG0321|consen 207 IRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL--DSSG 283 (720)
T ss_pred cccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe--cCCC
Confidence 333332 2233433 344457888888877 999999999987665544332222111110 123555555 6677
Q ss_pred CEEEEEeCCCcEEEEECCCCC-cceEEeeecCC---CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE-EeEEeccccC
Q 014114 228 RKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSG 302 (430)
Q Consensus 228 ~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~ 302 (430)
.+|.+.+.|+.|++|++.... .++..+.++.. .+. -..+|++.+|++|+.|...++|.+.+.+. ...+.+| .-
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh-t~ 361 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH-TR 361 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCc-ce
Confidence 888888889999999998643 34455554422 122 23589999999999999999999987664 4556677 99
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q 014114 303 SIRSIARHPTL-PIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 303 ~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~ 333 (430)
.|++++|.|.. .-+++++.|..++||++..+
T Consensus 362 eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 362 EVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999854 34777799999999999654
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-21 Score=174.64 Aligned_cols=321 Identities=14% Similarity=0.076 Sum_probs=226.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCC-CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGD-PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+|+.+-.+|.|-+|++... .-+...+.+ .+..+..++++ ++..|.+.+.+|.|.-||+.+++....+..
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~----w~~~~vi~g~~drsIE~L~W~-----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNN----WFLEPVIHGPEDRSIESLAWA-----EGGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred CceeeeccCCcEEEEccCCC----ceeeEEEecCCCCceeeEEEc-----cCCeEEeecCCceEEEEecccCceeEEecC
Confidence 45888999999999999874 122233434 34444444444 345699999999999999999998877765
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
....|-+++..+... .++.++.||.+...+...... ..-+.+. ...+.|.+++|+|+
T Consensus 109 --------~gg~IWsiai~p~~~--------~l~IgcddGvl~~~s~~p~~I------~~~r~l~-rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 109 --------NGGAIWSIAINPENT--------ILAIGCDDGVLYDFSIGPDKI------TYKRSLM-RQKSRVLSLSWNPT 165 (691)
T ss_pred --------CCcceeEEEeCCccc--------eEEeecCCceEEEEecCCceE------EEEeecc-cccceEEEEEecCC
Confidence 235777788777555 888999999666555432211 0111222 23578999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
+..|+.|+.||.|++||..++..++.....- ....-..+.-|.++.|. ....|++|..-|+|.+||...+. .++.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~-d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~gT-LiqS 240 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQL-DRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIFGT-LIQS 240 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeeecc-cccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccCcc-hhhh
Confidence 9999999999999999999988776322111 11111112447888885 45689999999999999999866 5888
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE---EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+..|...|.+++.++++.++++++.|+.|..|...+... ......+|...|.+++..++ .+++|+.|.++.+-..
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 899999999999999999999999999999888776543 22223334778999888776 7888888877776544
Q ss_pred CCCc--------------------------------------------------eeeEEeeccccceeEEEeeecCCcce
Q 014114 331 KTRQ--------------------------------------------------LLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 331 ~~~~--------------------------------------------------~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+..+ .+..+.+ .....|.+.+.+|+|++
T Consensus 319 ~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~--k~~~nIs~~aiSPdg~~ 396 (691)
T KOG2048|consen 319 REFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT--KEKENISCAAISPDGNL 396 (691)
T ss_pred cccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeec--CCccceeeeccCCCCCE
Confidence 3200 0001111 11234788999999999
Q ss_pred eeecCCCcEEEecCCC
Q 014114 361 NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~~d~~v~vw~~~~ 376 (430)
++.+.-..+++|.+..
T Consensus 397 Ia~st~~~~~iy~L~~ 412 (691)
T KOG2048|consen 397 IAISTVSRTKIYRLQP 412 (691)
T ss_pred EEEeeccceEEEEecc
Confidence 6666666777777765
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-22 Score=176.28 Aligned_cols=296 Identities=10% Similarity=0.094 Sum_probs=214.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEE--EccCCeEEEeccCCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAV--ARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~--g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
+++++++ ..++|||.... .....+..|+.+..+..++|... ++|++ .+.|..|++|.- .|+ ..++.
T Consensus 5 l~~aS~g--d~~kl~D~s~~-----~~~~~~~~~t~~pg~~s~~w~~~---n~lvvas~~gdk~~~~~~K-~g~-~~~Vp 72 (673)
T KOG4378|consen 5 LHVASTG--DKTKLSDFSDL-----ETKSEYVHQTAEPGDFSFNWQRR---NFLVVASMAGDKVMRIKEK-DGK-TPEVP 72 (673)
T ss_pred eeeeccC--CceEEeecccc-----cCccccccCCCCCcceeeecccc---ceEEEeecCCceeEEEecc-cCC-CCccc
Confidence 5555554 67999999863 33444444555445777777333 33544 456778999964 444 22222
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.... ...+.-.|+...... -++++++..+.++||++... .+..+-..|...|+++.++.
T Consensus 73 ~~~k----~~gd~~~Cv~~~s~S--------~y~~sgG~~~~Vkiwdl~~k---------l~hr~lkdh~stvt~v~YN~ 131 (673)
T KOG4378|consen 73 RVRK----LTGDNAFCVACASQS--------LYEISGGQSGCVKIWDLRAK---------LIHRFLKDHQSTVTYVDYNN 131 (673)
T ss_pred eeec----cccchHHHHhhhhcc--------eeeeccCcCceeeehhhHHH---------HHhhhccCCcceeEEEEecC
Confidence 2110 011223344443322 38999999999999998732 22333335778999999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcce
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
...+||+++..|.|.+..+.++.....+..... ..|.-+.| +|..+ +|.+++.+|.|.+||+.......
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred CcceeEEeccCCcEEEEecccCccccceecCCC--------CeEEEeec--ccccceeeEeeccCCeEEEEeccCCCccc
Confidence 999999999999999999999888777765532 34668888 55544 56778999999999998755434
Q ss_pred EEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 252 MSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
.....|..+...|+|+|.. .+|++.+.|..|.+||++..+....+.. ..+...++|.++|.+|++|...|.|..||+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCceEEEEec
Confidence 4556799999999999965 5778889999999999998777766665 568999999999999999999999999999
Q ss_pred CCCc-eeeEEeeccccceeEEEeeecCCc
Q 014114 331 KTRQ-LLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 331 ~~~~-~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
+..+ ++.. +..|... |++++|-|.-
T Consensus 280 R~~k~Pv~v--~sah~~s-Vt~vafq~s~ 305 (673)
T KOG4378|consen 280 RSTKAPVAV--RSAHDAS-VTRVAFQPSP 305 (673)
T ss_pred ccCCCCceE--eeecccc-eeEEEeeecc
Confidence 8754 4444 6667555 6999998764
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=2.4e-22 Score=179.44 Aligned_cols=310 Identities=13% Similarity=0.121 Sum_probs=208.1
Q ss_pred CCcceEEEEeccCCCCCC-ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 48 PHSSKCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+...+..++..|...|.. ..|+.+..||.|.++|....+.. ++...--.+..|...|..+.|.+... .|
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~--------~l 115 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGES--------LL 115 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCce--------eE
Confidence 334444445555445543 46788999999999998643322 11100011224557888888888444 99
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCce-------ee
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-------IW 198 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~-------~~ 198 (430)
++++.|.++++|++...... + .+ ..+.|.+.|.+++|.| +...|++|+.||.|.|||++-... ..
T Consensus 116 VsasGDsT~r~Wdvk~s~l~-----G-~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLV-----G-GR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred EEccCCceeeeeeeccceee-----c-ce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 99999999999999865432 1 11 3457889999999999 556788999999999999864220 00
Q ss_pred eecCCCC-----------CCCCccc----CcceeEeEEeeCCCCCEEEEEeC-CCcEEEEECCCCCcc-----e--EEee
Q 014114 199 TAKPPPK-----------NSLGIFT----PTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRP-----V--MSFD 255 (430)
Q Consensus 199 ~~~~~~~-----------~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~-----~--~~~~ 255 (430)
....+.. ......+ ...|+.+.| .|...||+++. |+.|++||++..... . ..+.
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 0000100 0000111 133566666 58889999887 999999999975431 1 1122
Q ss_pred ec---CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--EEeEEeccccCcE-EEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 256 FR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSI-RSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 256 ~~---~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~v-~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
.| ...+.++.....|.+|++.+.|+.|++||+.+.. ++..+.++....+ ..-..+|++.+|++|+.|..+++|.
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 23 2357778887888999998899999999997643 4455554422211 1225689999999999999999999
Q ss_pred CCCCceeeEEeeccccceeEEEeeecCCc--ceeeecCCCcEEEecCCCCCC
Q 014114 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKE--VANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~~~~~~d~~v~vw~~~~~~~ 379 (430)
+.+.+.-..+ +.+|.-. |++++|.|.. ..+++++|..++||+.....+
T Consensus 346 vs~~e~~~~~-l~Ght~e-Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 346 VSSPEAPPAL-LLGHTRE-VTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ecCccCChhh-hhCcceE-EEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 9886654443 6677555 5999998754 448899999999999865433
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.8e-23 Score=186.76 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=197.9
Q ss_pred CcEEEEEecCccCCcchhheecCCC-CcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC---CceeeeeeecCCCCC
Q 014114 24 GLIKVIEARGEDGGVPKVVERWGDP-HSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGA 99 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 99 (430)
-.++|+.+... ...+++...++.. .....+-.+.|. .-+.++||+++..|.|.+||+.. .+++..+..|.
T Consensus 60 s~lklyai~~~-~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~---- 133 (839)
T KOG0269|consen 60 SLLKLYAINPN-DFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE---- 133 (839)
T ss_pred cceeeEeeCcc-cCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhhhhc----
Confidence 46777777652 2223334443332 222223345553 44668999999999999999976 45555555544
Q ss_pred CCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEE
Q 014114 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSL 178 (430)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~ 178 (430)
..+.++.|..... +.|++|+.||.+++||+..... +..+. .....|..+.|+| .+.+++
T Consensus 134 ----Rs~~~ldfh~tep-------~iliSGSQDg~vK~~DlR~~~S--------~~t~~-~nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 134 ----RSANKLDFHSTEP-------NILISGSQDGTVKCWDLRSKKS--------KSTFR-SNSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred ----cceeeeeeccCCc-------cEEEecCCCceEEEEeeecccc--------ccccc-ccchhhhceeeccCCCceEE
Confidence 6788888877655 5999999999999999986543 22222 2457899999999 577899
Q ss_pred EecCCCeEEEEECCCC-ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-ceEEeee
Q 014114 179 FGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF 256 (430)
Q Consensus 179 ~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~ 256 (430)
++...|.|++||++.. ++...+..|. ++|.|+.| +|++.+||+|+.|++|+|||+.+.+. +...+.
T Consensus 194 s~~dsG~lqlWDlRqp~r~~~k~~AH~---------GpV~c~nw--hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn- 261 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCEKKLTAHN---------GPVLCLNW--HPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN- 261 (839)
T ss_pred EecCCceEEEeeccCchhHHHHhhccc---------CceEEEee--cCCCceeeecCCCccEEEEeccCCCccceeEEe-
Confidence 9999999999999864 4455555654 78999999 78999999999999999999986442 233332
Q ss_pred cCCCeEEEEeeCCCC-EEEEEc--CCCCEEEEEccCCe-EEeEEeccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 014114 257 RETPIKAVAEEPDSF-NIYIGN--GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 257 ~~~~i~~~~~s~~~~-~l~~~~--~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~v~iwd~~ 331 (430)
...++.+|.|-|... .|++++ .|-.|+|||++..- +..++..| ...++.++|.. |...|.+++.|++|..-.++
T Consensus 262 Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 262 TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 246899999999765 455554 56789999998664 45667777 99999999965 44678899999988766655
Q ss_pred CCc
Q 014114 332 TRQ 334 (430)
Q Consensus 332 ~~~ 334 (430)
+..
T Consensus 341 nat 343 (839)
T KOG0269|consen 341 NAT 343 (839)
T ss_pred ccc
Confidence 543
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-21 Score=167.18 Aligned_cols=257 Identities=11% Similarity=0.140 Sum_probs=189.6
Q ss_pred eEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccc-----c---CCc----ceeeEEeeccCCceEEEEEcC-
Q 014114 106 IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----E---SSC----STVKSWNVCASGTIAFSKVDI- 172 (430)
Q Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----~---~~~----~~i~~~~~~~~~~i~~~~~~~- 172 (430)
..|+.|.+. ...+...+++++.|+.+-.|.||++....... + +.. +.-..-...|...|..++|+.
T Consensus 176 PLC~ewld~-~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 176 PLCIEWLDH-GSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred chhhhhhhc-CCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 357777765 22222456799999999999999987654321 0 000 000000113555677788876
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
..+.|++|+.|.+|++||+.++++...+..|. ..|.++.|+ +....+|++|+.|++|.+.|++...+.-.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---------k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHG---------KKVQTLEWH-PYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcC---------CceeEEEec-CCCceEEEeccccceEEeeeccCccccCc
Confidence 45689999999999999999999998888665 679999997 45678999999999999999996443333
Q ss_pred EeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 014114 253 SFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD 329 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd 329 (430)
.++. .+.|-.++|.|.. ..++++..||+|+-+|+|.. +++.++..| .++|.+|++++.- .++++++.|+.|++|+
T Consensus 325 ~wk~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 325 EWKF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred eEEe-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEe
Confidence 3433 4689999998865 56778889999999999975 899999998 9999999999865 5789999999999999
Q ss_pred CCCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+..-.+-... .+...-+...|.++.|+-.+ ++++..+.++|||...
T Consensus 403 ~~~~~~~~v~-~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 403 FDVDSPKSVK-EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ecCCCCcccc-cccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 8654432211 11111223578888888766 7788888899999865
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.6e-21 Score=170.81 Aligned_cols=283 Identities=18% Similarity=0.164 Sum_probs=214.5
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee-eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
.+..+.++|++- +.+.||++-.||.|.||++..+=.. ..+.+ +.+..|.+++|.+ ++.|
T Consensus 24 ~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-------~~drsIE~L~W~e---------~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-------PEDRSIESLAWAE---------GGRL 83 (691)
T ss_pred eccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEEec-------CCCCceeeEEEcc---------CCeE
Confidence 345555555554 3456999999999999999764332 23333 3446788888862 3489
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 206 (430)
++.+.+|.+.-||+.... .++..+ ..++.|++++.+|.+..+++|+.||.++.++...+...+...-...
T Consensus 84 FS~g~sg~i~EwDl~~lk--------~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq- 153 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLK--------QKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ- 153 (691)
T ss_pred EeecCCceEEEEecccCc--------eeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-
Confidence 999999999999987543 334444 4578999999999999999999999888888888777655433322
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--------cCCCeEEEEeeCCCCEEEEEcC
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.+.+.+++| +|++..++.|+.||.|++||...+.. +..... ...-|.++.|-.++ .|++|..
T Consensus 154 ------~sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS 223 (691)
T KOG2048|consen 154 ------KSRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS 223 (691)
T ss_pred ------cceEEEEEe--cCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC-cEEEecC
Confidence 267999999 89999999999999999999998664 331111 22357778777554 8999999
Q ss_pred CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eEEeeccccceeEEEeeecC
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL--SAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~~i~~~~~s~ 356 (430)
.|+|.+||...+.++..+..| ...|.+++.++++.++++++.|+.|..|...+.+.- .......| ..-+.+++..+
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~ 301 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIE 301 (691)
T ss_pred CceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeec
Confidence 999999999999999999998 999999999999999999999999999987765431 11112233 23357888777
Q ss_pred CcceeeecCCCcEEEec
Q 014114 357 KEVANAAADAPMLEIQN 373 (430)
Q Consensus 357 ~g~~~~~~~d~~v~vw~ 373 (430)
+ .+++++.|..|.+--
T Consensus 302 ~-~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 302 N-ALISGGRDFTLAICS 317 (691)
T ss_pred c-eEEecceeeEEEEcc
Confidence 7 348888888887743
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-21 Score=159.50 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=203.5
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
++-|.+||+|+.||.|.|||+.+...-..+.+|. .+|.+++|..... .|++++.|..+.+||+.
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~--------~pi~sl~WS~dgr--------~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV--------RPITSLCWSRDGR--------KLLTSSRDWSIKLWDLL 95 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccc--------cceeEEEecCCCC--------EeeeecCCceeEEEecc
Confidence 7788999999999999999998887666666544 7899999987544 99999999999999987
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
.+. . +.++....+|+...|+|... .+++.-.+..-.+-++..+... .+......... ....+..
T Consensus 96 ~gs--------~--l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln----~sas~~~ 160 (405)
T KOG1273|consen 96 KGS--------P--LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLN----SSASHGV 160 (405)
T ss_pred CCC--------c--eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccc----ccccccc
Confidence 433 2 23444568999999999543 3333333333444444432221 11111111110 1122234
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC-CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-------e-
Q 014114 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-------K- 291 (430)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-------~- 291 (430)
| .+.|+++++|...|.+.++|..+.+ ++..++... ..|..+.|+..|+.|++-+.|..||.|+++.- +
T Consensus 161 f--dr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~ 237 (405)
T KOG1273|consen 161 F--DRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEV 237 (405)
T ss_pred c--cCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCc
Confidence 6 7899999999999999999999865 477777655 78999999999999999999999999998621 1
Q ss_pred -EEeEEecc-ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCc
Q 014114 292 -LLGCFIGK-CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPM 368 (430)
Q Consensus 292 -~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~ 368 (430)
+.+++..- ....-.+++|+.+|.|+++++ .-..++||....|.++.. ++|..+....++.|+|-...+..-..|.
T Consensus 238 e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI--LhG~kgE~l~DV~whp~rp~i~si~sg~ 315 (405)
T KOG1273|consen 238 EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI--LHGTKGEELLDVNWHPVRPIIASIASGV 315 (405)
T ss_pred ChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee--ecCCchhheeecccccceeeeeeccCCc
Confidence 11222110 133567889999999988776 446799999999999988 7787767789999999999855558899
Q ss_pred EEEecCCC
Q 014114 369 LEIQNGND 376 (430)
Q Consensus 369 v~vw~~~~ 376 (430)
+++|....
T Consensus 316 v~iw~~~~ 323 (405)
T KOG1273|consen 316 VYIWAVVQ 323 (405)
T ss_pred eEEEEeec
Confidence 99998754
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.2e-21 Score=155.52 Aligned_cols=282 Identities=11% Similarity=0.122 Sum_probs=184.5
Q ss_pred CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 47 DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+|..-+.++ +| .+.|..+|+++.|++|+|||.....--..+..++ ..++..|..+.|..+. .+..+
T Consensus 11 ~h~DlihdV--s~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W----rah~~Si~rV~WAhPE------fGqvv 76 (361)
T KOG2445|consen 11 GHKDLIHDV--SF--DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW----RAHDGSIWRVVWAHPE------FGQVV 76 (361)
T ss_pred CCcceeeee--ee--cccCceeeeccCCCcEEEEeccCCCCceEEeeeE----EecCCcEEEEEecCcc------ccceE
Confidence 355554444 44 3357899999999999999975544333333221 1244688888876643 45699
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCCcee--eeecC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKI--WTAKP 202 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~ 202 (430)
++++.|+++.||.-........+..-..+.--......|+.+.|.| -|-.|++++.||.|+||+....-.+ +.+..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 9999999999997532111110000011111123457899999999 5778999999999999987653222 11111
Q ss_pred CCCCC--CCcccCcceeEeEEeeCCC-CCEEEEEeCC-----CcEEEEECCCCC-c--ceEEeeecCCCeEEEEeeCCC-
Q 014114 203 PPKNS--LGIFTPTWFTSAAFLSIDD-HRKFVAGTND-----HQVRLYDTSAQR-R--PVMSFDFRETPIKAVAEEPDS- 270 (430)
Q Consensus 203 ~~~~~--~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d-----g~i~~wd~~~~~-~--~~~~~~~~~~~i~~~~~s~~~- 270 (430)
.-... ..-.+.....|+.|+++.- ..+|++|+.+ +.++||...... + .+..+..|..+|+.|+|.|+-
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 10000 0000124567888853322 3467777765 478888766433 1 245667899999999999963
Q ss_pred ---CEEEEEcCCCCEEEEEccCC--------------------eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 014114 271 ---FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 271 ---~~l~~~~~dg~v~iwd~~~~--------------------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i 327 (430)
..||+++.|| |+||.+... +.+..+..| .+.|+.+.|+-.|..|++.+.||.||+
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeee
Confidence 6899999999 999998731 234456677 999999999999999999999999999
Q ss_pred EeCC---CCceeeEEeeccc
Q 014114 328 WDIK---TRQLLSAVFLKQH 344 (430)
Q Consensus 328 wd~~---~~~~~~~~~~~~~ 344 (430)
|... ..++...+...++
T Consensus 315 Wkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 315 WKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred hhhhhhhhheeeeEEeccCC
Confidence 9753 2345554433333
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.1e-22 Score=169.69 Aligned_cols=245 Identities=15% Similarity=0.159 Sum_probs=177.3
Q ss_pred CCceEEEEccCCeEEEeccCCCc-eeeeeee------------cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc
Q 014114 64 NDPLLAVARKNGLTDILNPLNGD-LRVAISN------------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
.|+|+|.|+.|..|.|||+.--. .+..+.. .....-+.|.+.+..+.|.... .+.|++++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~-------~nVLaSgs 263 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF-------RNVLASGS 263 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc-------ceeEEecC
Confidence 46899999999999999985211 1111110 0111112455556555554332 35999999
Q ss_pred cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCC---CceeeeecCCCCC
Q 014114 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKN 206 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~ 206 (430)
.|.++.+||+....... ... .|++.|.++.|+| ...+|++|+.|++|.+.|.+. ....+.+.
T Consensus 264 aD~TV~lWD~~~g~p~~--------s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~----- 329 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKS--------SIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD----- 329 (463)
T ss_pred CCceEEEEEcCCCCcce--------ehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-----
Confidence 99999999998765432 222 5789999999999 567899999999999999984 22333333
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEE
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASV 285 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iw 285 (430)
+.|..++|. ......+++++.||+|+-+|+|...+++..+++|..+|.+|++++.- .++++++.|+.|++|
T Consensus 330 -------g~VEkv~w~-~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 330 -------GEVEKVAWD-PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred -------cceEEEEec-CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 458889995 33456788889999999999999888999999999999999998754 578999999999999
Q ss_pred EccCCeE--EeEEeccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeE
Q 014114 286 DIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 286 d~~~~~~--~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
++..... +..-.-. -+...|.++.|+-. +++.|+..+.++|||+.+...+..
T Consensus 402 ~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred eecCCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 9864333 2111111 23467778888765 467777888899999988766543
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-21 Score=179.92 Aligned_cols=242 Identities=14% Similarity=0.129 Sum_probs=192.5
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (430)
...+.+.+-+. +..+++++.||.+++|........ ..+|.+ ++..|.+++.. +++|++|+.+
T Consensus 14 ~G~t~i~~d~~--------gefi~tcgsdg~ir~~~~~sd~e~----P~ti~~----~g~~v~~ia~~--s~~f~~~s~~ 75 (933)
T KOG1274|consen 14 GGLTLICYDPD--------GEFICTCGSDGDIRKWKTNSDEEE----PETIDI----SGELVSSIACY--SNHFLTGSEQ 75 (933)
T ss_pred CceEEEEEcCC--------CCEEEEecCCCceEEeecCCcccC----Cchhhc----cCceeEEEeec--ccceEEeecc
Confidence 45555666553 349999999999999986543110 012211 45667777664 5699999999
Q ss_pred CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEE
Q 014114 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA 263 (430)
Q Consensus 184 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~ 263 (430)
++|.+|.+.+++.-..+.... -++.+++| +.+|+++|.|+.|-.|++.++..... ...+.+|..+|.+
T Consensus 76 ~tv~~y~fps~~~~~iL~Rft---------lp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFT---------LPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQ 143 (933)
T ss_pred ceEEEeeCCCCCccceeeeee---------ccceEEEE--ecCCcEEEeecCceeEEEEeccccch-heeecccCCceee
Confidence 999999998876533332221 45889999 78999999999999999999988554 8899999999999
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc------c-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------C-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~-~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
+.|+|++++||+.+.||.|++||+.++.+..++.+- . ...+..++|+|++..|+..+.|+.|.+|+..+++..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999999999999999999999999998877666532 1 345778999999888888889999999999999998
Q ss_pred eEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
..+....+ ...+..+.|+|.|++ ++++-+|.|.|||...
T Consensus 224 f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 88643333 444799999999999 9999999999999983
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.4e-21 Score=159.02 Aligned_cols=219 Identities=18% Similarity=0.261 Sum_probs=164.6
Q ss_pred ccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCce------eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE
Q 014114 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 160 ~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (430)
.|++.|.++.+.+ .++++++|+.||.|.+||++.... +......-...-.-.|.-.|..+.|. +-|..+|.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy-P~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY-PIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe-eecCceeec
Confidence 5788999999987 789999999999999999976331 10000000000011123457888887 446678999
Q ss_pred EeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC---CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEE
Q 014114 233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 233 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
++.|.++++||.++.+. ...|+. ++.|++-+++|-. -++|+|..+-.|++-|+.+|.+-+.+.+| .+.|.++.|
T Consensus 120 sSFDhtlKVWDtnTlQ~-a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE-AVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVEW 196 (397)
T ss_pred ccccceEEEeeccccee-eEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEEEe
Confidence 99999999999998653 445543 4678888888743 47888889999999999999999999999 999999999
Q ss_pred cCCCCE-EEEEeCCCeEEEEeCCCC-ceeeEEe------------eccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 310 HPTLPI-IASCGLDSYLRFWDIKTR-QLLSAVF------------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 310 s~~~~~-l~s~~~d~~v~iwd~~~~-~~~~~~~------------~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
+|...+ |++|+.||.|++||++.- .++..+. -..| .+.+..++|+.+|.+ ++.+.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhhhhccCccceEEeec
Confidence 998765 789999999999999753 2333211 1233 345799999999999 99999999999998
Q ss_pred CCCCCcccc
Q 014114 375 NDTQEDATE 383 (430)
Q Consensus 375 ~~~~~~~~~ 383 (430)
........+
T Consensus 276 ~~G~ntl~~ 284 (397)
T KOG4283|consen 276 ESGRNTLRE 284 (397)
T ss_pred ccCcccccc
Confidence 775443333
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=9.1e-22 Score=170.85 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=201.5
Q ss_pred EEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc--cCCeeEEEEeeeecc
Q 014114 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKV 145 (430)
Q Consensus 68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~g~i~v~~~~~~~~ 145 (430)
|.+++....++|||.........+..+.+.. .+..+.|-.. +.+++++ .|..+.+|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~p------g~~s~~w~~~---------n~lvvas~~gdk~~~~~~K~g~-- 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEP------GDFSFNWQRR---------NFLVVASMAGDKVMRIKEKDGK-- 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCC------cceeeecccc---------ceEEEeecCCceeEEEecccCC--
Confidence 3444444679999997766655555544322 3555665432 1344444 4445666654322
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.+.|.+.....+..-.|++......++++|+..+.|+|||++...+.+.++.|. ..|+++.| +.
T Consensus 68 -----~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~---------stvt~v~Y--N~ 131 (673)
T KOG4378|consen 68 -----TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ---------STVTYVDY--NN 131 (673)
T ss_pred -----CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc---------ceeEEEEe--cC
Confidence 123444443344445555555566899999999999999999777777777776 77999999 67
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeec-CCCeEEEEeeCCCCE-EEEEcCCCCEEEEEccCCeEEeEEeccccCc
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
...+||+++..|.|.|..+.++.+ ...|... ...|+-+.|+|..+. |.+++.+|.|.+||+....++..+...|..+
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP 210 (673)
T ss_pred CcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence 788999999999999999998664 4455443 456778999998765 5667889999999998888887776656999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 304 IRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 304 v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
...|+|+|.. .+|++.+.|..|++||+.+.+....+... .+...++|.++|.+ ++|...|.|..||.....
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeeec----CCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9999999965 57889999999999999988877775432 33688899999999 889999999999987543
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-23 Score=188.35 Aligned_cols=199 Identities=20% Similarity=0.257 Sum_probs=179.4
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
|...+.++..-..++.+++|+.|-.+.+|.+.....+..+.+|. ..|.++.| ++...+|+.|+.+|+|+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---------spIeSl~f--~~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---------SPIESLTF--DTSERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---------Ccceeeec--CcchhhhcccccCCcee
Confidence 44556666665677899999999999999998888877777776 77999999 88999999999999999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+||+...+ .++.+.+|...+.++.|+|-+.+++.|+.|..+++||++..-+.+.+.+| ...|..+.|+|+|+++++++
T Consensus 96 ~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~Gr~v~~g~ 173 (825)
T KOG0267|consen 96 VWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDGRWVASGG 173 (825)
T ss_pred eeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCCceeeccC
Confidence 99999855 58899999999999999999999999999999999999988899999997 99999999999999999999
Q ss_pred CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 321 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+|..++|||...|+.+.. +..|.. .+..+.|+|..-+ ++|+.|+++++||..
T Consensus 174 ed~tvki~d~~agk~~~e--f~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 174 EDNTVKIWDLTAGKLSKE--FKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred Ccceeeeecccccccccc--cccccc-cccccccCchhhhhccCCCCceeeeeccc
Confidence 999999999999999988 666744 4689999999888 999999999999987
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.2e-22 Score=191.35 Aligned_cols=255 Identities=16% Similarity=0.214 Sum_probs=194.6
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGK 182 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 182 (430)
..+..+.|-..... ..+.++.|.+||.|.+|+..... .......+...+ .|.+.|..+.|++. +++|++|+.
T Consensus 65 ~rF~kL~W~~~g~~----~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSH----SHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred ccceeeeecccCCC----ccceeeccccCCceEEecchhhc--cCcchHHHhhhc-ccCCceeeeeccccCCceeeccCC
Confidence 46777887665442 22578999999999999976531 111122333334 57899999999995 559999999
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCC--C
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--P 260 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--~ 260 (430)
+|.|.|||+.+.+.-..... ...+..|.+++|. ......|++++.+|.+.|||++.. +++..+..+.. .
T Consensus 138 ~geI~iWDlnn~~tP~~~~~-------~~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGS-------QAPPSEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMH 208 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCC-------CCCcccceEeccc-hhhhHHhhccCCCCCceeccccCC-CcccccccCCCccc
Confidence 99999999987555444321 1123679999995 344567899999999999999985 45666665543 4
Q ss_pred eEEEEeeCCC-CEEEEEcCCC---CEEEEEccCC-eEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc
Q 014114 261 IKAVAEEPDS-FNIYIGNGSG---DLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 261 i~~~~~s~~~-~~l~~~~~dg---~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~ 334 (430)
+..++|+|+. ..|++++.|. .|.+||+|.. ..++++.+| ...|.++.|++.+ .+|++++.|+.|.+|+.++++
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 7789999987 4566666553 4999999854 467778787 9999999999966 889999999999999999999
Q ss_pred eeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCCCC
Q 014114 335 LLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~~~ 378 (430)
.+.. +... +..++.+.|+|...- ++++-||.|.||.+....
T Consensus 288 vl~~--~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 288 VLGE--LPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred Eeee--cCCC-CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9998 4443 556799999998874 888999999999987654
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3e-21 Score=166.08 Aligned_cols=254 Identities=13% Similarity=0.130 Sum_probs=194.7
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGK 182 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 182 (430)
.+|.+++|.+.... ..+++|...|.|-+|++..... ....+.++. .|.++|.++.|+| +...+++.++
T Consensus 187 ~Rit~l~fHPt~~~------~lva~GdK~G~VG~Wn~~~~~~----d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENR------KLVAVGDKGGQVGLWNFGTQEK----DKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred cceEEEEecccCcc------eEEEEccCCCcEEEEecCCCCC----ccCceEEec-cCCccccceEecCCChhheeeecc
Confidence 58889999886553 3889999999999999952221 113455555 5789999999999 5678999999
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeE
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK 262 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 262 (430)
||+|++-|++....-..+..... ..++.++.| +.+...++.+..-|...+||++++......+..|...|+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d-------~~~fs~~d~--~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTD-------NIWFSSLDF--SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred CceeeeeeecchhhHHHhhcCcc-------ceeeeeccc--cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999987643322222111 156778888 667777888888889999999998776777888999999
Q ss_pred EEEeeCCC-CEEEEEcCCCCEEEEEccCCeEE----eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC----CCC
Q 014114 263 AVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI----KTR 333 (430)
Q Consensus 263 ~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~----~~~ 333 (430)
+|+++|.. .+|++++.|++++|||++..... .....| ...|.++.|||.+-.|++.+.|..|+|||. ..-
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H-rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH-RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc-cceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 99999965 67899999999999999864322 223345 889999999999878999999999999998 344
Q ss_pred ceeeEEeecccccee--EEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 334 QLLSAVFLKQHLNEV--VFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~--i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
.++..++.....+.. ....+|.|+..+ +++..-..|-|+|....+
T Consensus 406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 555555432222111 467799999999 888888999999988755
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-20 Score=152.99 Aligned_cols=251 Identities=16% Similarity=0.209 Sum_probs=180.3
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--CCCEEE
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSL 178 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~ 178 (430)
.|.+-|.++.|-.. +..+++|+.|++++||+..... +.-..-.-|+ .|.+.|..+.|.+ -|+.+|
T Consensus 11 ~h~DlihdVs~D~~--------GRRmAtCSsDq~vkI~d~~~~s----~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFY--------GRRMATCSSDQTVKIWDSTSDS----GTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred CCcceeeeeeeccc--------CceeeeccCCCcEEEEeccCCC----CceEEeeeEE-ecCCcEEEEEecCccccceEE
Confidence 34455666665443 3499999999999999973221 1112233466 4688999999965 689999
Q ss_pred EecCCCeEEEEECCCCc---------eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 179 FGGKGVEVNVWDLDKCE---------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 179 ~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
+++.|+++.||.-.... ...++... ...|+.+.|.|..-|-.+++++.||.++||+......
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds---------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS---------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecC---------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 99999999999753110 11222222 2679999997666788999999999999998764321
Q ss_pred -----ceEEee-------ecCCCeEEEEeeCC---CCEEEEEcCC-----CCEEEEEccCC----eEEeEEeccccCcEE
Q 014114 250 -----PVMSFD-------FRETPIKAVAEEPD---SFNIYIGNGS-----GDLASVDIRTG----KLLGCFIGKCSGSIR 305 (430)
Q Consensus 250 -----~~~~~~-------~~~~~i~~~~~s~~---~~~l~~~~~d-----g~v~iwd~~~~----~~~~~~~~~~~~~v~ 305 (430)
+...+. .+..+..|+.|+|. ..+|++|+.+ +.+.||..... ..+.++.+| ..+|+
T Consensus 149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~-~dpI~ 227 (361)
T KOG2445|consen 149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH-TDPIR 227 (361)
T ss_pred cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC-CCcce
Confidence 111222 35568899999874 4688888876 57889876543 346677787 99999
Q ss_pred EEEEcCCC----CEEEEEeCCCeEEEEeCCCCc-----------------eeeEEe-eccccceeEEEeeecCCcce-ee
Q 014114 306 SIARHPTL----PIIASCGLDSYLRFWDIKTRQ-----------------LLSAVF-LKQHLNEVVFDSAFADKEVA-NA 362 (430)
Q Consensus 306 ~i~~s~~~----~~l~s~~~d~~v~iwd~~~~~-----------------~~~~~~-~~~~~~~~i~~~~~s~~g~~-~~ 362 (430)
+|+|.|+- .+||+++.|| |+||.++... .+..+. +.+| ++.++.+.|+-.|.. .+
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEee
Confidence 99999963 5799999999 9999987311 122221 5566 455799999999999 89
Q ss_pred ecCCCcEEEecCCC
Q 014114 363 AADAPMLEIQNGND 376 (430)
Q Consensus 363 ~~~d~~v~vw~~~~ 376 (430)
.++||.|++|..+-
T Consensus 306 tGdDG~VRLWkany 319 (361)
T KOG2445|consen 306 TGDDGCVRLWKANY 319 (361)
T ss_pred cCCCceeeehhhhh
Confidence 99999999998764
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=154.72 Aligned_cols=289 Identities=14% Similarity=0.136 Sum_probs=193.4
Q ss_pred CCCCCceEEEEccCCeEEEeccCCCceeee------eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCe
Q 014114 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVA------ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (430)
Q Consensus 61 ~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 134 (430)
++|||..|++-+.|..+.+|++...-.-.. ++.+. .-..+....|....|++.-.. ..+..+.+++.+.+.-
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~-~~r~~eg~tvydy~wYs~M~s-~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHL-SYRYQEGETVYDYCWYSRMKS-DQPSTNLFAVSSRDQP 134 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccce-eEEeccCCEEEEEEeeecccc-CCCccceeeeccccCc
Confidence 499999999999999999999853211110 00000 000133345666666643321 1135568888888888
Q ss_pred eEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecCCCeEEEEEC-CCCceeeeecCCCCCCCCccc
Q 014114 135 ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 135 i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~ 212 (430)
|++|+.-....-. ..+.++.. .-....+++|+|+|.+|++ +....|++||+ +.|..-...........+ .
T Consensus 135 Ih~wdaftG~lra-----Sy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~g--q 206 (406)
T KOG2919|consen 135 IHLWDAFTGKLRA-----SYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFG--Q 206 (406)
T ss_pred eeeeecccccccc-----chhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccccc--c
Confidence 9999875543211 22222211 1134578999999999995 45668999999 444322211111110011 0
Q ss_pred CcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccC-
Q 014114 213 PTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT- 289 (430)
Q Consensus 213 ~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~- 289 (430)
.+-+.+++| +| +...+++++....+-||.-.. ..|+..+-+|.+.|+.+.|.++|+.|++|+ .|..|..||++.
T Consensus 207 ~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 207 KGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cceeeeeec--cCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 145788899 55 455899999999998988776 457888999999999999999999999998 467899999985
Q ss_pred CeEEeEEeccccCcEEEEE--EcCCCCEEEEEeCCCeEEEEeCCC-CceeeEEeeccccceeEEEeeecCCcceeeecC
Q 014114 290 GKLLGCFIGKCSGSIRSIA--RHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVANAAAD 365 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~--~s~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~ 365 (430)
..++..+..|....--.|. ..|++++|++|+.||.|++||++. +..+.. +..+... +..++++|--.+++.+.
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv--~~~~sd~-vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV--TGNYSDT-VNGVSLNPIMPILATSS 359 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc--ccccccc-ccceecCcccceeeecc
Confidence 4567777766222333444 468899999999999999999988 665655 4445444 69999999977733333
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=158.84 Aligned_cols=250 Identities=13% Similarity=0.140 Sum_probs=170.8
Q ss_pred CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee---------cCCC-CCCCCCCceEEEEeeccCc
Q 014114 47 DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN---------AGDS-GAQPEDDGIVGLHLFKRQR 116 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------~~~~-~~~~~~~~i~~~~~~~~~~ 116 (430)
.|.+.+.-+.... .++..+.++=+..|.|.||++.. .+..+.. ..|+ .+..+...=.++.|.+...
T Consensus 149 ~h~g~~NRvr~~~--~~~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 149 PHYGGINRVRVSR--LGNEVLCASWSENGRVQVWDLAP--HLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccceeeecc--cCCcceeeeecccCcEEEEEchh--hhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445544444444 33456778888999999999842 1111111 0000 0112223334566655333
Q ss_pred cccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCC-
Q 014114 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC- 194 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~- 194 (430)
+.+++|..-+.|++|....+.-.. -..--..|...|-.++|+| ....|++|+-||+|+|||++.+
T Consensus 225 -------g~LlsGDc~~~I~lw~~~~g~W~v------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 225 -------GRLLSGDCVKGIHLWEPSTGSWKV------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred -------cccccCccccceEeeeeccCceee------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence 478888888889999876532110 0011124678899999999 4568899999999999999987
Q ss_pred --ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC--CcceEEeeecCCCeEEEEeeCCC
Q 014114 195 --EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~s~~~ 270 (430)
.++.. +.|. .-|+.+.| +.+..+|++|+.||+++|||++.. .+|+..|+.|..+|++|.|+|..
T Consensus 292 ~~~~~~~-kAh~---------sDVNVISW--nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 292 KKAAVST-KAHN---------SDVNVISW--NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ccceeEe-eccC---------CceeeEEc--cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 33333 3333 56999999 677779999999999999999963 35789999999999999999965
Q ss_pred -CEEEEEcCCCCEEEEEccCC-------------------eEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 014114 271 -FNIYIGNGSGDLASVDIRTG-------------------KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFW 328 (430)
Q Consensus 271 -~~l~~~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iw 328 (430)
..|++++.|..|.|||+... ++++.-.+ ...+..+.|++.- -+|++.+.|| +.||
T Consensus 360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc--hhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 57888889999999998631 12222223 5678889999864 4788888888 4554
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.7e-20 Score=161.43 Aligned_cols=295 Identities=14% Similarity=0.111 Sum_probs=207.5
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+.+.+.+++|.+ ...-+++|+|..-|.|-+||+.+ ++....+.. |.++..+|.++.+.+... ..+
T Consensus 185 ~~~Rit~l~fHP--t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-----f~~hs~~Vs~l~F~P~n~-------s~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFHP--TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-----FTPHSGPVSGLKFSPANT-------SQI 250 (498)
T ss_pred cccceEEEEecc--cCcceEEEEccCCCcEEEEecCCCCCccCceEE-----eccCCccccceEecCCCh-------hhe
Confidence 455555555544 44457899999999999999942 222222221 225557899999988655 589
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce-eeeecCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPK 205 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~ 205 (430)
++.+.||+++.-|++...... +...+ .....+..+.|+.+...++.+..=|...+||++++.. ...+..|.
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~------v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~- 322 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEE------VLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK- 322 (498)
T ss_pred eeeccCceeeeeeecchhhHH------HhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-
Confidence 999999999999987543211 11111 1123456677888778888888777999999988655 44455554
Q ss_pred CCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC--c-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
..|.++++. +-...+|++++.|++++|||++... . |+.....|..+|.+..|||.+-.|++.+.|..|
T Consensus 323 --------kKI~sv~~N-P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I 393 (498)
T KOG4328|consen 323 --------KKITSVALN-PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI 393 (498)
T ss_pred --------cccceeecC-CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCce
Confidence 458999994 2245689999999999999998632 2 345556789999999999999889999999999
Q ss_pred EEEEcc----CCeEEeEEecccc----CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc-ceeEEEee
Q 014114 283 ASVDIR----TGKLLGCFIGKCS----GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL-NEVVFDSA 353 (430)
Q Consensus 283 ~iwd~~----~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~i~~~~ 353 (430)
+|||.. ...+...+...+. -......|.|+..++++|-.-..|-|+|-..++.+..+ .... ..+..-..
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el--~~P~~~tI~~vn~ 471 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL--HDPESSTIPSVNE 471 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec--cCcccccccccee
Confidence 999983 3333333332111 12445689999999999999999999999888877774 2332 24444568
Q ss_pred ecCCcce--eeecCCCcEEEecCC
Q 014114 354 FADKEVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 354 ~s~~g~~--~~~~~d~~v~vw~~~ 375 (430)
|+|-+.. +.++..|.|+||-..
T Consensus 472 ~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 472 FHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ecccccceeccCCccceEEEEecC
Confidence 9998884 445567888888543
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=7.7e-20 Score=165.09 Aligned_cols=324 Identities=11% Similarity=0.071 Sum_probs=223.5
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+..+++-+....|.+||.... .....+.+|...++|+..-+... --.++++|+.||.|++|.++.......+.
T Consensus 23 ~~~~~vafGa~~~Iav~dp~k~-----~i~t~l~GH~a~VnC~~~l~~s~-~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 23 GPGGLVAFGAGPAIAVADPEKI-----LIVTTLDGHVARVNCVHWLPTSE-IVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccceEEecCCceEEEeCcccc-----eeEEeccCCccceEEEEEccccc-ccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 3456677777889999999873 45678889999988887764322 22389999999999999997444433332
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC-ceEEEEEc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~-~i~~~~~~ 171 (430)
. . .+...+.|+.-.. . .......++.+.+|+...... ......+...+. ...|+++.
T Consensus 97 ~-~-----g~~~~~~cv~a~~--~--------~~~~~~ad~~v~vw~~~~~e~------~~~~~~rf~~k~~ipLcL~~~ 154 (764)
T KOG1063|consen 97 I-Q-----GHCKECVCVVARS--S--------VMTCKAADGTVSVWDKQQDEV------FLLAVLRFEIKEAIPLCLAAL 154 (764)
T ss_pred e-c-----CcceeEEEEEeee--e--------EEEeeccCceEEEeecCCCce------eeehheehhhhhHhhHHHhhh
Confidence 2 0 1223444433222 1 222237899999999832210 011112222111 12455555
Q ss_pred C-CC-CEEEEecCCCeEEEEECCC--CceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCC
Q 014114 172 I-SE-KFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 172 ~-~~-~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+ ++ -.++.|+.+..|.++.-.. ...+..+.+|. +||.+++|.... +.-+|+++++|..|+||.+.-
T Consensus 155 ~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~---------DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~ 225 (764)
T KOG1063|consen 155 KNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHT---------DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVL 225 (764)
T ss_pred ccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccc---------hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEe
Confidence 5 33 3456777788888886553 34566777876 999999995211 234789999999999998753
Q ss_pred CC--------------------cce----------EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe-----
Q 014114 247 QR--------------------RPV----------MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----- 291 (430)
Q Consensus 247 ~~--------------------~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~----- 291 (430)
.. ... ..+.+|+..|+++.|+|.+..|++++.|.++.+|...+..
T Consensus 226 ~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 226 GDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred cCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 21 011 1123799999999999999999999999999999876542
Q ss_pred --EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEEeeccccceeEEEeeecCCcce-eeecCCC
Q 014114 292 --LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI-KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAP 367 (430)
Q Consensus 292 --~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~ 367 (430)
.+..+.+. ....++..|+|++..+++-+.-|..++|.. ......+.....||.+++ .+++|+|.|.+ ++++.|-
T Consensus 306 ~vRlGe~gg~-a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V-~dv~W~psGeflLsvs~DQ 383 (764)
T KOG1063|consen 306 VVRLGEVGGS-AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV-KDVDWDPSGEFLLSVSLDQ 383 (764)
T ss_pred EEEeeccccc-ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc-eeeeecCCCCEEEEecccc
Confidence 22233332 567899999999999999999999999983 334445555577898775 99999999999 9999999
Q ss_pred cEEEecCC
Q 014114 368 MLEIQNGN 375 (430)
Q Consensus 368 ~v~vw~~~ 375 (430)
+-++|-..
T Consensus 384 TTRlFa~w 391 (764)
T KOG1063|consen 384 TTRLFARW 391 (764)
T ss_pred ceeeeccc
Confidence 99998877
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.3e-21 Score=156.24 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=159.2
Q ss_pred ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCc
Q 014114 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQ 238 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~ 238 (430)
.|.+.|++++|+.+|++|++++.|+.|++|+++.... +.|..-...+ ..+..+.+.| .||.+-+++.. ...+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nv-e~dhpT~V~F--apDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNV-EYDHPTRVVF--APDCKSVVVSVKRGNK 156 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccc-cCCCceEEEE--CCCcceEEEEEccCCE
Confidence 4778999999999999999999999999999976221 1111000000 0134678899 78877655544 4558
Q ss_pred EEEEECCCCCc---ce-----E---EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEE
Q 014114 239 VRLYDTSAQRR---PV-----M---SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (430)
Q Consensus 239 i~~wd~~~~~~---~~-----~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i 307 (430)
+++|.+...+. +. . .-+-|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~a 234 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDA 234 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccce
Confidence 99998754221 11 1 112255677777777888999999999999999997 9999999886 7777888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCC---CC---ceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCCCc
Q 014114 308 ARHPTLPIIASCGLDSYLRFWDIK---TR---QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQED 380 (430)
Q Consensus 308 ~~s~~~~~l~s~~~d~~v~iwd~~---~~---~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~~~ 380 (430)
+.||+|+++++++.--.|++|.+- .| +....+.+.+|..+ |+.++|+++... ++++.||..+|||.+...+.
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa-V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA-VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh-eeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 999999999999998899999862 22 22334558999665 599999999999 99999999999999876553
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=4.6e-20 Score=152.48 Aligned_cols=300 Identities=11% Similarity=0.048 Sum_probs=204.9
Q ss_pred CCcceEEEEecc-CCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 48 PHSSKCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 48 ~~~~~~~~~~~~-~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
|..++.-++|.. .+.-+-+.+++.+ ..++.||.....--+..++...+. ...+...++.-.++... .+..+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~--d~~Esfytcsw~yd~~~-----~~p~l 108 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADE--DHDESFYTCSWSYDSNT-----GNPFL 108 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCC--CCCcceEEEEEEecCCC-----CCeeE
Confidence 555655555542 2221223444444 467889987544333444432221 12222333333333332 34588
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 205 (430)
++++.-|.|+|.++.... +.-.-..|+..|..+.++|. .+++++++.|..|++|++++..++..+-+-..
T Consensus 109 a~~G~~GvIrVid~~~~~---------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQ---------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred EeecceeEEEEEecchhh---------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 999999999999987543 22223478999999999995 57899999999999999999999988765433
Q ss_pred CCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc------------------------ceE---EeeecC
Q 014114 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------------------------PVM---SFDFRE 258 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------------------------~~~---~~~~~~ 258 (430)
|.+.|.++.| ++++.+|++++.|.+|++|++...+- ++- +-..|.
T Consensus 180 ------HrdeVLSvD~--~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 180 ------HRDEVLSVDF--SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred ------ccCcEEEEEE--cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 3377999999 89999999999999999999983210 000 123366
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEc-cCC-------------eEEeEEeccccCcEEEEEE--cCCCCEEEEEeCC
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTG-------------KLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLD 322 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~-~~~-------------~~~~~~~~~~~~~v~~i~~--s~~~~~l~s~~~d 322 (430)
..|-|+.|- |.++++-+-++.|..|.. +-. ..+.++.-. ...|+-|.| .|-+++||.|...
T Consensus 252 nyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 252 NYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred chHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccCC
Confidence 677777775 568999999999999987 211 123344443 456666654 5667899999999
Q ss_pred CeEEEEeCCCCceeeEEe-eccccceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 323 SYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 323 ~~v~iwd~~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
|.|++||++..++...-. ........|...+|+.||.+ +...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999877632211 22233455899999999999 999999999999864
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-19 Score=149.48 Aligned_cols=274 Identities=14% Similarity=0.145 Sum_probs=196.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+.|..+|.|.|||..+- .....+++|-.+++ ++|| +++|..|++++.|..|.+||+..|.++..+..-
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~--sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPIT--SLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceeeeeccCCcEEEEEcccc-----chhhhhhcccccee--EEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 45888999999999999985 56678888999855 4555 668889999999999999999999998888763
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc--cccCCcceeeEEeeccCCceEEEEEcC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~--~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+ +|....|.+... +.++++-.+..-.+.++..... .....++.+ .....+..|++
T Consensus 107 s---------pv~~~q~hp~k~-------n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl-------n~sas~~~fdr 163 (405)
T KOG1273|consen 107 S---------PVWGAQWHPRKR-------NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL-------NSSASHGVFDR 163 (405)
T ss_pred C---------ccceeeeccccC-------CeEEEEEecCCcEEEEecCCceeeccCCCcccc-------ccccccccccC
Confidence 3 555555555433 2444444433333433331110 000011110 11122336888
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc---
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--- 249 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--- 249 (430)
.|+++++|...|.+.++|..+.+++..++... ...|..+.| +..+..|+.-+.|..|+.|+++.-..
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~--s~~g~~liiNtsDRvIR~ye~~di~~~~r 233 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIV--SRKGRFLIINTSDRVIRTYEISDIDDEGR 233 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEE--eccCcEEEEecCCceEEEEehhhhcccCc
Confidence 99999999999999999999998887776532 145778888 78999999999999999999873110
Q ss_pred -----ceEEeee--cCCCeEEEEeeCCCCEEEEEcCC-CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC
Q 014114 250 -----PVMSFDF--RETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 250 -----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
+.+.++. ....-.+++|+.+|.|++.++.. ..++||....|.+++.+.+........+.|+|-...+++- .
T Consensus 234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~ 312 (405)
T KOG1273|consen 234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-A 312 (405)
T ss_pred cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-c
Confidence 0111110 12244578899999999888743 5699999999999999998744678899999999888887 6
Q ss_pred CCeEEEEeCC
Q 014114 322 DSYLRFWDIK 331 (430)
Q Consensus 322 d~~v~iwd~~ 331 (430)
.|.|+||...
T Consensus 313 sg~v~iw~~~ 322 (405)
T KOG1273|consen 313 SGVVYIWAVV 322 (405)
T ss_pred CCceEEEEee
Confidence 7899999864
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=155.00 Aligned_cols=281 Identities=11% Similarity=0.092 Sum_probs=195.4
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++-..|.|++||..++ +.+..|.+++..+..+.|.-.++|. .+.+++.||+|++||++.......+.--
T Consensus 41 ~~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~ds~h--~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCDSPH--GVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCCCCC--eeEEeccCCeEEEEEeecchhhhheecc
Confidence 46899999999999999987 8899999999888888887755543 5899999999999999876655444331
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEc----cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
. ....++.++..-.+. +.+++++ .+-.+.+||+.... +.++.|.-.|...|+++.|
T Consensus 114 ~-----~~~~~f~~ld~nck~--------~ii~~GtE~~~s~A~v~lwDvR~~q-------q~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 114 Q-----QSGTPFICLDLNCKK--------NIIACGTELTRSDASVVLWDVRSEQ-------QLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred C-----CCCCcceEeeccCcC--------CeEEeccccccCceEEEEEEecccc-------chhhhhhhhccCcceeEEe
Confidence 1 012345555543222 2555554 35678899987654 3478888889999999999
Q ss_pred cC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 171 DI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 171 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
+| +.++|++|+.||.|.+||+.....--.+. ..+.+...|.++.|. ++.-+.|.+-+..++..+|++..+..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~------~viN~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL------HVINHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHH------Hhhcccceeeeeeee-cCCcceEEEEEccCceeEEEccCCCh
Confidence 99 56799999999999999997542110000 011123669999996 44445788889999999999987653
Q ss_pred ceEEeeecC------------CCeEEEEeeCCCCEEEEEcC-CCCEEEEEcc---C---CeEEeEEeccccCcEEEEEEc
Q 014114 250 PVMSFDFRE------------TPIKAVAEEPDSFNIYIGNG-SGDLASVDIR---T---GKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 250 ~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~-dg~v~iwd~~---~---~~~~~~~~~~~~~~v~~i~~s 310 (430)
...+.... ..+...-...+...++.++. -+...++-+. + .+.+..+.++|..-|+++.|.
T Consensus 247 -~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 247 -ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD 325 (376)
T ss_pred -hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh
Confidence 32222110 11111111123445555544 5666665443 2 345667778668899999999
Q ss_pred CCCCEEEEEeCCCeEEEEeC
Q 014114 311 PTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 311 ~~~~~l~s~~~d~~v~iwd~ 330 (430)
..+.++.||++||.+.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 88999999999999999986
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.3e-20 Score=164.78 Aligned_cols=275 Identities=17% Similarity=0.213 Sum_probs=194.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee-
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN- 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 93 (430)
..|++|+.||+||||.+.++ ..+.++. ....+.++++++ .++-..||++-... +.|.+..-|..+.....
T Consensus 413 ~wlasGsdDGtvriWEi~Tg-----Rcvr~~~-~d~~I~~vaw~P--~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATG-----RCVRTVQ-FDSEIRSVAWNP--LSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred ceeeecCCCCcEEEEEeecc-----eEEEEEe-ecceeEEEEecC--CCCceeEEEEecCc-eEEeCccccchhhhcchh
Confidence 46899999999999999997 6676665 345666777776 66666677765554 77777655533222111
Q ss_pred ---cCC-C-CC--------C---------------CCCCceEEEEeeccCccccccCCceEEEEccC---CeeEEEEeee
Q 014114 94 ---AGD-S-GA--------Q---------------PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEV 142 (430)
Q Consensus 94 ---~~~-~-~~--------~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---g~i~v~~~~~ 142 (430)
+.. . .+ . .+...|..+.|... +.+|++...+ ..+.|..+..
T Consensus 484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk--------GDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK--------GDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC--------CceEEEeccCCCcceEEEEeccc
Confidence 000 0 00 0 01122223333332 2255554332 2344444432
Q ss_pred ecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEe
Q 014114 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
.... .-|. ...+.|.++.|+|...+|++++.. .|++||+..++.+..+.... .+|..++.
T Consensus 556 ~~sQ--------~PF~-kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~---------kwiS~msi- 615 (733)
T KOG0650|consen 556 RKSQ--------SPFR-KSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGS---------KWISSMSI- 615 (733)
T ss_pred cccc--------Cchh-hcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCC---------eeeeeeee-
Confidence 2110 0111 235789999999999999988765 79999999888777766543 67899999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc------CC---eEE
Q 014114 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------TG---KLL 293 (430)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~------~~---~~~ 293 (430)
+|.|..|+.++.|+.+..||+.-..++.+.+..|...+++|+|++.-.+|++|+.||++.||.-. .. -++
T Consensus 616 -hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 616 -HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred -cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 89999999999999999999998778899999999999999999999999999999999988432 11 245
Q ss_pred eEEeccccC----cEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 294 GCFIGKCSG----SIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 294 ~~~~~~~~~----~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
..+.+| .. .|..+.|+|...+|++++.||+|++|
T Consensus 695 K~L~gH-~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 695 KRLRGH-EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeccCc-eeecccceEeecccCCCceEEecCCCceEEee
Confidence 667777 43 48899999999999999999999998
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.1e-20 Score=153.59 Aligned_cols=280 Identities=14% Similarity=0.179 Sum_probs=196.9
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
..+|++...|.|+|||..+++.+..++++.+ .+..+.+.+... ...+++++.||+|++||+.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~--------~~N~vrf~~~ds------~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA--------TTNGVRFISCDS------PHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC--------cccceEEecCCC------CCeeEEeccCCeEEEEEeecchh
Confidence 4589999999999999999999999998652 344566655322 24899999999999999986543
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC----CCeEEEEECCCCce-eeeecCCCCCCCCcccCcceeEeE
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
.....|....+.+..+++.+..++.+++|.. +-.|.+||++..+. +..+... |.+-|+++.
T Consensus 107 ------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--------H~DDVT~lr 172 (376)
T KOG1188|consen 107 ------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--------HNDDVTQLR 172 (376)
T ss_pred ------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--------ccCcceeEE
Confidence 2344455444467788888888889998854 66799999987665 4433221 237799999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEECCCCCc--ceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEe
Q 014114 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 297 (430)
|+ +.+.++|++|+.||.|.+||+..... ++...-.|...|.++.|..++ +.|.+-+......+|+++.+.+...+.
T Consensus 173 FH-P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 173 FH-PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ec-CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 97 45788999999999999999985321 233333466789999998776 568888889999999999877554443
Q ss_pred cc-----------ccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeC---CCC---ceeeEEeeccccceeEEEeeecCCcc
Q 014114 298 GK-----------CSGSIRSIARHPTLPIIASCGL-DSYLRFWDI---KTR---QLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 298 ~~-----------~~~~v~~i~~s~~~~~l~s~~~-d~~v~iwd~---~~~---~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
.. ....+-......+...++.++. -+...++-+ .++ +.+.. +.++...+|.++.|...+.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~--l~g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAI--LQGGHEEIVRDILFDVKND 329 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcccc--ccCCcHHHHHHHhhhcccc
Confidence 21 0111222222224445555544 455555543 233 33333 6666677889999998888
Q ss_pred e-eeecCCCcEEEecCCC
Q 014114 360 A-NAAADAPMLEIQNGND 376 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~~~~ 376 (430)
+ .+|+.||.|.+|...+
T Consensus 330 ~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eeeccCCCceEEEEecCC
Confidence 8 9999999999998733
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=6.3e-20 Score=151.70 Aligned_cols=285 Identities=14% Similarity=0.210 Sum_probs=204.2
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCC--CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGD--PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
++|.+ ...+.+|+... +.++ .+++.+.. +++.....+++++-....++||+|+.-|.|+|.|+.++++...+.+|
T Consensus 58 fatvG-~~rvtiy~c~~-d~~i-r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 58 FATVG-GNRVTIYECPG-DGGI-RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred EEEeC-CcEEEEEEECC-ccce-eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence 44444 45788998876 2222 23444443 56666677777765544679999999999999999999999888875
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe--eccCCceEEEEEcC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDI 172 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~ 172 (430)
. ..|..+.+.+... +.+++++.|+.+++|++.... .+.++- ..|...|.++.|++
T Consensus 135 G--------~sINeik~~p~~~-------qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 135 G--------GSINEIKFHPDRP-------QLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred C--------ccchhhhcCCCCC-------cEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEEEEEEcC
Confidence 4 6788888877554 589999999999999997543 444442 25778999999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeec---------------CCCCC----CCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAK---------------PPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---------------~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
++.+|++++.|.+|++|++...+.-..++ ....+ ...-.|..+|-|+.| -++++++-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw----~gd~ilSk 267 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW----FGDFILSK 267 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH----Hhhheeec
Confidence 99999999999999999998432111110 00000 011235567888888 47899999
Q ss_pred eCCCcEEEEECCCCCc-------------ceEEeeecCCCeEEEEe--eCCCCEEEEEcCCCCEEEEEccCCeEE--eEE
Q 014114 234 TNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTGKLL--GCF 296 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~ 296 (430)
+-++.|..|..-..+. .+..+......|.-+.| .|-++.||.|...|.|.+||++...+. .++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 9999999998721111 12233334445555544 677789999999999999999876552 111
Q ss_pred e-ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 297 I-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 297 ~-~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
. ......|...+|+.|+.+|+..+.|++|.-||..
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1 1125689999999999999999999999999853
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=158.46 Aligned_cols=206 Identities=17% Similarity=0.230 Sum_probs=157.1
Q ss_pred eeccCCceEEEEEcC--CCCEEEEecCCCeEEEEECCC----------------CceeeeecCCCCCCCCcccCcceeEe
Q 014114 158 NVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDK----------------CEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
.+.|.+.+..+...+ +..+.++-+..|.|+||++.. .+.++++.+|. ..-..+
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk---------~EGy~L 217 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK---------GEGYGL 217 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC---------ccceee
Confidence 344556666666665 445666778899999999853 23455555554 445678
Q ss_pred EEeeCCC-CCEEEEEeCCCcEEEEECCCCCcc--eEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCC---eE
Q 014114 220 AFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG---KL 292 (430)
Q Consensus 220 ~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~---~~ 292 (430)
+| +|- -..|++|..-+.|++|...++.=. ...+.+|+..|-.++|||.. ..|++|+.||.|+|||++.+ .+
T Consensus 218 dW--Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 218 DW--SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ec--ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 88 552 235788888889999998874321 23466799999999999965 57899999999999999987 33
Q ss_pred EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEEeeccccceeEEEeeecCCcce--eeecCCC
Q 014114 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT---RQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAP 367 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~ 367 (430)
+.+ +.| .+.|+-|.|+....+|++|+.||+++|||+++ +++++. ++.| ...|+++.|+|.... ++++.|.
T Consensus 296 ~~~-kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~--fk~H-k~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 296 VST-KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT--FKYH-KAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred eEe-ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee--EEec-cCCeeEEEeccccCceEEeccCCC
Confidence 433 666 88999999999988999999999999999976 566777 5556 455799999996554 8899999
Q ss_pred cEEEecCCCCCC
Q 014114 368 MLEIQNGNDTQE 379 (430)
Q Consensus 368 ~v~vw~~~~~~~ 379 (430)
.|.+||+....+
T Consensus 371 QitiWDlsvE~D 382 (440)
T KOG0302|consen 371 QITIWDLSVEAD 382 (440)
T ss_pred cEEEEEeeccCC
Confidence 999999986544
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=2.7e-19 Score=168.77 Aligned_cols=291 Identities=18% Similarity=0.228 Sum_probs=211.7
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|-.+.++++...-.|+|||.+.++.+..+.... +....|..+.+.+... ...+++++.||.|+||.--
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D------~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQD------DALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccc------hhheeeeccCceEEEeccc
Confidence 4555678998888899999999999988776644 2335788899888665 3489999999999999743
Q ss_pred eecccccCCcceeeEEeeccC------CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcc
Q 014114 142 VTKVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (430)
.... ...+.+.-|..-.+ +.=.-+.|.....+|++++.-..|+|||...-.++..+.... ...
T Consensus 1142 ~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s--------~t~ 1210 (1387)
T KOG1517|consen 1142 ADKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS--------STL 1210 (1387)
T ss_pred cccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC--------Ccc
Confidence 2210 11123444432111 111345677777778878878899999999877777765542 144
Q ss_pred eeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC--cceEEeeecCCC--eEEEEeeCCCC-EEEEEcCCCCEEEEEccCC
Q 014114 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~ 290 (430)
++++.-. ...|+.|++|..||.|++||.+... ..+...+.|+.. |..+.+.++|- .|++|+.+|.|++||++..
T Consensus 1211 vTaLS~~-~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSAD-LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceeeccc-ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6666654 3458999999999999999998643 367788888877 99999988774 5999999999999999974
Q ss_pred eE--EeEEeccc--cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee----ccccceeEEEeeecCCcce-e
Q 014114 291 KL--LGCFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL----KQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 291 ~~--~~~~~~~~--~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~~~~i~~~~~s~~g~~-~ 361 (430)
.. ...+..|- .+..+++..+++...+|+|+. +.|.||++. |+.+..+.. -+.....+.+++|+|-..+ +
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 22 12222221 224999999999999999998 999999985 554444321 1222233689999999888 8
Q ss_pred eecCCCcEEEecCCCC
Q 014114 362 AAADAPMLEIQNGNDT 377 (430)
Q Consensus 362 ~~~~d~~v~vw~~~~~ 377 (430)
+|+.|.+|.||.....
T Consensus 1368 aG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1368 AGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hccCCceEEEeecCCc
Confidence 9999999999987653
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.1e-21 Score=181.61 Aligned_cols=284 Identities=14% Similarity=0.198 Sum_probs=202.9
Q ss_pred cCCCcEEEEEecCcc-CCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC---ceeeeeeecCC
Q 014114 21 DSLGLIKVIEARGED-GGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGD 96 (430)
Q Consensus 21 ~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~ 96 (430)
+.+.++-||.+...+ ....+.+..+.. .....-++++..++-..-+||.|..||.|.+||...- .....+..
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~--- 111 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT--- 111 (1049)
T ss_pred ccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh---
Confidence 445667777665321 111222322221 1222234444322211125888999999999998642 21111111
Q ss_pred CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCC
Q 014114 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEK 175 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~ 175 (430)
+..|.+.|.++.+..... +.+++|..+|.|.|||+......... + .......|.+++|+. ...
T Consensus 112 --~~~h~G~V~gLDfN~~q~-------nlLASGa~~geI~iWDlnn~~tP~~~--~-----~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 112 --KSKHTGPVLGLDFNPFQG-------NLLASGADDGEILIWDLNKPETPFTP--G-----SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred --hcccCCceeeeeccccCC-------ceeeccCCCCcEEEeccCCcCCCCCC--C-----CCCCcccceEeccchhhhH
Confidence 123447888888766544 58999999999999999864332111 0 222456799999987 456
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCC---cEEEEECCCCCcce
Q 014114 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH---QVRLYDTSAQRRPV 251 (430)
Q Consensus 176 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg---~i~~wd~~~~~~~~ 251 (430)
.|++++.+|.+.|||++..+.+..+..+... ..+..+.|+ |+. ..|++++.|. .|.+||+|....++
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~Wh--P~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAWH--PDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeeeC--CCCceeeeeecCCCCCceeEeecccccCCch
Confidence 7888999999999999998887777665432 347889994 544 3555555543 69999999888889
Q ss_pred EEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 014114 252 MSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWD 329 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~iwd 329 (430)
+.+++|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+... ...+..+.|+|... .+++++.||.|-||.
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeee
Confidence 9999999999999999866 89999999999999999999999999986 88999999999776 788899999999999
Q ss_pred CCCCc
Q 014114 330 IKTRQ 334 (430)
Q Consensus 330 ~~~~~ 334 (430)
+.+..
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87654
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=7.7e-20 Score=146.74 Aligned_cols=265 Identities=15% Similarity=0.129 Sum_probs=185.7
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...+..|...++ +..|..+ .+|++|..-|.|++|++.+.+.+..+..+ +...|..++..++
T Consensus 7 ~fvLRp~~~~v~--s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~-------g~~~it~lq~~p~------- 67 (323)
T KOG0322|consen 7 FFVLRPHSSSVT--SVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLF-------GRLFITNLQSIPN------- 67 (323)
T ss_pred eeEeccccchhe--ehhhccc---hhhhcccccceEEEEEeecCccchhhhhh-------ccceeeceeecCC-------
Confidence 344556666644 4444222 45999999999999999988887777752 2245666666553
Q ss_pred CCceEEEEccCCeeEEEEeeeecccc------------------c-------------CCcc----------eeeEEeec
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSA------------------E-------------SSCS----------TVKSWNVC 160 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-------------~~~~----------~i~~~~~~ 160 (430)
..+.+-+.|+.+.+|++.+..-.+ . +.+. .+++-+..
T Consensus 68 --d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 68 --DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred --cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 368888999999999987732110 0 0000 00000000
Q ss_pred ---cCCceEEEEEcC-C--CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCC-CcccCcceeEeEEeeCCCCCEEEEE
Q 014114 161 ---ASGTIAFSKVDI-S--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 161 ---~~~~i~~~~~~~-~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
..+.+.|..+.. . .-+++.|.++|.|.+||+.++..+..++....... ...|..+|.++.| .+..+.=++|
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy--as~~~rGisg 223 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY--ASSCDRGISG 223 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee--chhhcCCcCC
Confidence 013455555432 2 23566788899999999999866655554332222 2234578999999 4555566788
Q ss_pred eCCCcEEEEECCCC--Ccce-EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEc
Q 014114 234 TNDHQVRLYDTSAQ--RRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 234 ~~dg~i~~wd~~~~--~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s 310 (430)
+.+..+..|.+... ...+ ..+...+-.|..+.+-||++.+|+++.|+.||||+.++.+++..++-| ...|++++|+
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfs 302 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFS 302 (323)
T ss_pred CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeC
Confidence 88889999998753 2212 122333457888999999999999999999999999999999999998 8999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeC
Q 014114 311 PTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 311 ~~~~~l~s~~~d~~v~iwd~ 330 (430)
|+..++|+++.|++|.+|++
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999986
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=162.19 Aligned_cols=272 Identities=10% Similarity=0.109 Sum_probs=212.5
Q ss_pred EEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC
Q 014114 53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
++..++| .|||..|+.+.. ..+.|||.++|.++..+++|. +.|.|+++..... .+++|+.|
T Consensus 14 ci~d~af--kPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHK--------DtVycVAys~dGk--------rFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHK--------DTVYCVAYAKDGK--------RFASGSAD 74 (1081)
T ss_pred chheeEE--CCCCceEEEecC-CEEEEEeCCCccccccccccc--------ceEEEEEEccCCc--------eeccCCCc
Confidence 4555666 677777766643 568999999999999999976 7889999887544 99999999
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
..+.+|+-... + +....|+..|.|+.|+|-.+.|++++-+ ..-+|.......... +.
T Consensus 75 K~VI~W~~klE--------G---~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-ks---------- 131 (1081)
T KOG1538|consen 75 KSVIIWTSKLE--------G---ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-KS---------- 131 (1081)
T ss_pred eeEEEeccccc--------c---eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-hh----------
Confidence 99999985432 2 3455789999999999999999988765 467887655433221 11
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe--eecCCCeEEEEeeCCC-----CEEEEEcCCCCEEEE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDS-----FNIYIGNGSGDLASV 285 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~~i~~~~~s~~~-----~~l~~~~~dg~v~iw 285 (430)
...+.+++| ..||.+|+.|-.+|+|.+-+-...++ +..- .+.+++|.+++|+|.. ..+++.....++.+|
T Consensus 132 s~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 132 SSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred heeEEEeee--cCCCcEEEEeccCceEEeecCCCCcc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 156889999 89999999999999999987654332 2222 2367899999999854 467888888888888
Q ss_pred EccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeec
Q 014114 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~ 364 (430)
.+ +|+.+.+-+.- .-...|+.+.++|.+++.|+.|+.+.+|. +.|-.+.+ +. ..+..|+.++..|+++. +.|.
T Consensus 209 ~L-sG~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGT--vg-~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 209 QL-SGKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGT--VG-EQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred Ee-cceeecccccC-CCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEee--cc-ccceeEEEEEEccCCceEEEEE
Confidence 88 57776654443 45668899999999999999999999996 66888877 33 35788999999999999 9999
Q ss_pred CCCcEEEecCC
Q 014114 365 DAPMLEIQNGN 375 (430)
Q Consensus 365 ~d~~v~vw~~~ 375 (430)
.||+|..|+..
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 99999999864
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=3.4e-19 Score=144.90 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=170.7
Q ss_pred eeEEEEeeeecccc-cCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce-eeeecCCCCCCCCcc
Q 014114 134 KASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIF 211 (430)
Q Consensus 134 ~i~v~~~~~~~~~~-~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~ 211 (430)
.+.||.+......+ ...-..+...+..+-+.|.|+.|.|++..+++-. |+.|.+|++..+.. +..+...... .
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~--e-- 168 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA--E-- 168 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc--c--
Confidence 46788876543321 1122344455545567899999999999999766 77899999988765 3333322111 1
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCC
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~ 290 (430)
+....++-+|.|+.+++.+++. .|+++..||+++..+....-.+|...|+.+.|+|+-+ +|++++.||.|+|||.+..
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred ccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 2245778889665688888875 6899999999997765555567888999999999875 5788889999999999865
Q ss_pred -eEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-----------------------------eeeEE
Q 014114 291 -KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ-----------------------------LLSAV 339 (430)
Q Consensus 291 -~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~-----------------------------~~~~~ 339 (430)
.+++++.+| ...|+++.|+|.- ++|++++.|..|.+|...+-. .+.+
T Consensus 248 k~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t- 325 (370)
T KOG1007|consen 248 KFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET- 325 (370)
T ss_pred CccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc-
Confidence 478889998 9999999999954 678999999999999753211 1112
Q ss_pred eeccccceeEEEeeecCCcce--eeecCCCcEEEecCC
Q 014114 340 FLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 340 ~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~ 375 (430)
+..|.++ |++++|+.-..+ ++-+.||.+.|=...
T Consensus 326 -ydehEDS-VY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 326 -YDEHEDS-VYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred -ccccccc-eEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 3456444 699999988887 788999999885544
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.5e-18 Score=136.61 Aligned_cols=280 Identities=18% Similarity=0.153 Sum_probs=193.7
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeee-eec-CCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI-SNA-GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (430)
+++-++ +|.++||++|..+|.|.+..+..-..-... ++- .-..+.+++.++..+.+++ ..|++++.
T Consensus 13 vf~qa~--sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----------~~Lls~gd 80 (325)
T KOG0649|consen 13 VFAQAI--SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----------DFLLSGGD 80 (325)
T ss_pred HHHHhh--CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----------hheeeccC
Confidence 344455 888999999999999999988542111100 110 0112346778888888874 25555554
Q ss_pred CCeeEEEEeeeecccccCCcceeeEEeecc--------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCA--------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 132 ~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
|.++-|........ ..+-++|.... -..|.++.+.|..+-++.++.|+.++.||+++|+..+++++|
T Consensus 81 -G~V~gw~W~E~~es----~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 81 -GLVYGWEWNEEEES----LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred -ceEEEeeehhhhhh----ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 99998876544322 12334454332 245889999998888888889999999999999999999998
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee---------c-CCCeEEEEeeCCCCEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---------R-ETPIKAVAEEPDSFNI 273 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---------~-~~~i~~~~~s~~~~~l 273 (430)
. +.+.++.- ......+++|++||++++||++++++ +..+.. | ...|.+++.+.+ +|
T Consensus 156 t---------DYvH~vv~--R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl 221 (325)
T KOG0649|consen 156 T---------DYVHSVVG--RNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--WL 221 (325)
T ss_pred c---------ceeeeeee--cccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc--eE
Confidence 7 78988887 44566899999999999999999764 555432 2 235777776544 88
Q ss_pred EEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEee
Q 014114 274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 353 (430)
++|+ ...+.+|+++..++...|.- ..++..+.|. ...+++++..+.|.-|.+. |.....+.. . ...++...
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~--~-s~~c~s~s 292 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPI--PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV--E-STACYSAS 292 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEec--ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC--C-ccceeeec
Confidence 8875 45699999999888877765 5678889994 4578888888899999864 555554322 2 12235555
Q ss_pred ecCCc-ce-eeecCCCcEEEec
Q 014114 354 FADKE-VA-NAAADAPMLEIQN 373 (430)
Q Consensus 354 ~s~~g-~~-~~~~~d~~v~vw~ 373 (430)
|+..- ++ ..++..+.+.|+.
T Consensus 293 ~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 293 WQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccCCceEEEEecccceeeeeee
Confidence 54332 22 4566667777764
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.8e-19 Score=146.23 Aligned_cols=282 Identities=14% Similarity=0.161 Sum_probs=200.8
Q ss_pred cceEeecCCCcEEEEEecCcc--CC-----cchhheecCCCCcceEEEEecc-----CCCCCCceEEEEccCCeEEEecc
Q 014114 15 LRALTFDSLGLIKVIEARGED--GG-----VPKVVERWGDPHSSKCVLAASI-----DDSQNDPLLAVARKNGLTDILNP 82 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~p~g~~l~~g~~dg~i~iwd~ 82 (430)
..+++-++|..+++|++.... .+ ..+....+.- ..+.++...+| ...|+..++|+.+.+.-|++||.
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda 140 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA 140 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence 457888999999999986411 01 0111111111 12233444444 24688899999999999999999
Q ss_pred CCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcc-eeeEEeecc
Q 014114 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCA 161 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~-~i~~~~~~~ 161 (430)
.+|++...+..+..... -..-.++.+.+.. .+|+ ++.+..|+|+++....... .+- ++..-....
T Consensus 141 ftG~lraSy~~ydh~de---~taAhsL~Fs~DG--------eqlf-aGykrcirvFdt~RpGr~c--~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 141 FTGKLRASYRAYDHQDE---YTAAHSLQFSPDG--------EQLF-AGYKRCIRVFDTSRPGRDC--PVYTTVTKGKFGQ 206 (406)
T ss_pred cccccccchhhhhhHHh---hhhheeEEecCCC--------CeEe-ecccceEEEeeccCCCCCC--cchhhhhcccccc
Confidence 99999988887432110 0122346665422 2554 5566889999985432110 000 000002223
Q ss_pred CCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CCcE
Q 014114 162 SGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i 239 (430)
.+.|.+++|+| +...+++|+....+-||.-..+.++..+.+|. +.|+.+.| .++|+.|.+|.. |-.|
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~--~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQW--CEDGNKLFSGARKDDKI 275 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEe--ccCcCeecccccCCCeE
Confidence 57799999999 55589999999999999998899998888876 77999999 799999999875 7789
Q ss_pred EEEECCCCCcceEEeeecCC-CeEEEE--eeCCCCEEEEEcCCCCEEEEEccC-CeEEeEEeccccCcEEEEEEcCCCCE
Q 014114 240 RLYDTSAQRRPVMSFDFRET-PIKAVA--EEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~-~i~~~~--~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~ 315 (430)
..||++....++..+..|.. .-..|. ..|++++|++|+.||.|++||++. +..+..+..+ ...++.++++|--++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIMPI 354 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCcccce
Confidence 99999987778888877755 333444 468999999999999999999988 6667777776 889999999999888
Q ss_pred EEEEeCCC
Q 014114 316 IASCGLDS 323 (430)
Q Consensus 316 l~s~~~d~ 323 (430)
+++++...
T Consensus 355 latssGqr 362 (406)
T KOG2919|consen 355 LATSSGQR 362 (406)
T ss_pred eeeccCce
Confidence 88887543
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=9.7e-19 Score=156.63 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=128.9
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC------cceEEeeecCCCeEEEEeeCC-CCEEEEEcCCCCEEEE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASV 285 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~iw 285 (430)
...|+.+.|. ..|...|++++.||.|++|.+..+. .+...+..|...|+++.|+|- ...|++++.|-+|++|
T Consensus 627 gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccC-CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 3568888885 3477889999999999999987532 356678899999999999994 3688999999999999
Q ss_pred EccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeEEeeccccceeEEEeeecCCcce-eee
Q 014114 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~-~~~ 363 (430)
|+++++....+.+| .+.|.+++|||+|+.+++.+.||+|++|+.++++. ++. -++..+..--.+.|..||++ +..
T Consensus 706 Dl~~~~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E--g~gpvgtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE--GKGPVGTRGARILWACDGRIVIVV 782 (1012)
T ss_pred ehhhhhhhheeccC-cCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc--CCCCccCcceeEEEEecCcEEEEe
Confidence 99999999999998 99999999999999999999999999999887654 332 23333333356788899998 555
Q ss_pred cCC----CcEEEecCCCC
Q 014114 364 ADA----PMLEIQNGNDT 377 (430)
Q Consensus 364 ~~d----~~v~vw~~~~~ 377 (430)
+.| ..|.+|+....
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cccccchhhhhhhhhhhc
Confidence 444 45777776543
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=2.4e-18 Score=146.31 Aligned_cols=295 Identities=12% Similarity=0.088 Sum_probs=203.2
Q ss_pred cceEeecCCCcEEEEEecCccCC----cchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee--
Q 014114 15 LRALTFDSLGLIKVIEARGEDGG----VPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-- 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~-- 88 (430)
.+++||+.|..|++|.+...+.+ .-.....+..|...++++.| +|+|++||+|+.+|.|.+|-...-...
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf----~p~gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF----SPDGELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE----cCCcCeeeecCCCceEEEEEecCcCCccc
Confidence 48999999999999988754322 23345678889999877777 557889999999999999986521100
Q ss_pred ----ee----eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec
Q 014114 89 ----VA----ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 89 ----~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
.. ...+.- ...+.+.+..++|.+... .+++++.|..+.+|++..... +...+ .
T Consensus 103 d~e~~~~ke~w~v~k~--lr~h~~diydL~Ws~d~~--------~l~s~s~dns~~l~Dv~~G~l--------~~~~~-d 163 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKV--LRGHRDDIYDLAWSPDSN--------FLVSGSVDNSVRLWDVHAGQL--------LAILD-D 163 (434)
T ss_pred cchhhhCccceEEEEE--ecccccchhhhhccCCCc--------eeeeeeccceEEEEEecccee--------Eeecc-c
Confidence 00 000000 012445666777777444 999999999999999976442 22333 5
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec----------CCCCCCCCcccC----cceeEeEEeeCCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK----------PPPKNSLGIFTP----TWFTSAAFLSIDD 226 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----------~~~~~~~~~~~~----~~v~~~~~~~~~~ 226 (430)
|...+..++|.|.++++++-+.|...+.+.+...+.+.... ......+.++|. .....++| +|+
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf--TPd 241 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF--TPD 241 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc--CCC
Confidence 77889999999999999999999877877776544333222 111222333332 23556778 899
Q ss_pred CCEEEEEeC----CC-----cEEEEECCCCCcceEEeeecCCCeEEEEeeC------------------CCCEEEEEcCC
Q 014114 227 HRKFVAGTN----DH-----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP------------------DSFNIYIGNGS 279 (430)
Q Consensus 227 ~~~l~~~~~----dg-----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~d 279 (430)
|.++++... .+ ..++|+-...++|...+.....+...+.|+| -...+++++ .
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~ 320 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-K 320 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-c
Confidence 999887542 22 2355554444556666666555666666655 222345554 4
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
+.|.|||.++..++.....-|-..|+.++|+++|.+|+..+.||...+-.++..++
T Consensus 321 ~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 321 NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 56999999998888888776689999999999999999999999988887766554
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=5.7e-19 Score=149.46 Aligned_cols=204 Identities=9% Similarity=0.085 Sum_probs=163.6
Q ss_pred ccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCce-------eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE
Q 014114 160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 160 ~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
.|.++|..++|+| +.+.||+|+.|.+|.+|.+..+.. +..+.+|. ..|..+.|+| -..+.|+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---------rrVg~V~wHP-tA~NVLl 148 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---------RRVGLVQWHP-TAPNVLL 148 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---------eeEEEEeecc-cchhhHh
Confidence 5788999999999 778899999999999999976543 44455554 6788999963 3467899
Q ss_pred EEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 232 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
+++.|.+|.+|++.+++. +..+. |..-|.+++|+.+|.+|++.+.|..|+|||.++++.+..-.+|....-..+.|-.
T Consensus 149 sag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hccCCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999885 55566 9999999999999999999999999999999999999988888666677788888
Q ss_pred CCCEEEEE---eCCCeEEEEeCCCCceeeEE-eeccccceeEEEeeecCCcce--eeecCCCcEEEecCCCC
Q 014114 312 TLPIIASC---GLDSYLRFWDIKTRQLLSAV-FLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 312 ~~~~l~s~---~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~~ 377 (430)
+|.++.|| ..+.++-+||..+.+.-..+ .+... ++ |.---|.+|..+ ++|-.|+.|+.|+....
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NG-VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEeccC-Cc-eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 99855444 25788999998765433222 23333 34 456678888887 88999999999998753
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.5e-18 Score=162.31 Aligned_cols=286 Identities=16% Similarity=0.188 Sum_probs=192.0
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCC-cceEEEEeccCCCCCCceEEEEccCCeEEEeccC-CC----ceee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPH-SSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG----DLRV 89 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~----~~~~ 89 (430)
.+++++..-.|+|||.+.+ +.+..|..+. ....+..+.+-+..|..+|++|+.||.|+||+-- +. +++.
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred eeEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE
Confidence 3678887889999999976 5555554322 2233556666667777899999999999999743 22 2333
Q ss_pred eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
.+.+....-..+.+.. ++.-|.... +.|++++.-..|+|||.+.... +.-.-......|+++.
T Consensus 1153 aw~~Ls~~~~~~r~~~--~v~dWqQ~~-------G~Ll~tGd~r~IRIWDa~~E~~--------~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTG--LVVDWQQQS-------GHLLVTGDVRSIRIWDAHKEQV--------VADIPYGSSTLVTALS 1215 (1387)
T ss_pred eeccccccCccCCCCC--eeeehhhhC-------CeEEecCCeeEEEEEeccccee--------EeecccCCCccceeec
Confidence 3333322221122222 344444332 4788888788899999875332 1111122345566665
Q ss_pred EcC-CCCEEEEecCCCeEEEEECCCCc---eeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEEC
Q 014114 170 VDI-SEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDT 244 (430)
Q Consensus 170 ~~~-~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~ 244 (430)
-+- .|+.++.|..||.|++||.+... .+...+.|... ..|..+.+ .+.|- .|++|+.+|.|++||+
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~-------~~Iv~~sl--q~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV-------EPIVHLSL--QRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCc-------ccceeEEe--ecCCCcceeeeccCCeEEEEec
Confidence 543 57999999999999999987532 34444444421 23888888 44443 5999999999999999
Q ss_pred CCC-CcceEEeeecC--C-CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe------ccccCcEEEEEEcCCCC
Q 014114 245 SAQ-RRPVMSFDFRE--T-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTLP 314 (430)
Q Consensus 245 ~~~-~~~~~~~~~~~--~-~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~i~~s~~~~ 314 (430)
+.. ......+..|. + .++++..+++...+|+|+. +.|+||++. |+.+..++ +...+.+.|++|+|.--
T Consensus 1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence 973 22223333332 3 5999999999999999988 999999984 55544443 22346789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCc
Q 014114 315 IIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd~~~~~ 334 (430)
++++|+.|.+|.||......
T Consensus 1365 llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhccCCceEEEeecCCcC
Confidence 99999999999999876543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=4.6e-16 Score=146.16 Aligned_cols=314 Identities=18% Similarity=0.304 Sum_probs=223.0
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCc-eEEE-EccCCeEEEeccCC-Cceeeeee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDP-LLAV-ARKNGLTDILNPLN-GDLRVAIS 92 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~-g~~dg~i~iwd~~~-~~~~~~~~ 92 (430)
.++.++.|+.+.+|+..... .....+..... ..+..+... .+++. +++. +..|+.+.+|+... ......+.
T Consensus 79 ~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 79 LLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred EEEEecCCCcEEEEEcCCCc----eeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 45667789999999998741 14455554332 123344443 44555 4555 44499999999977 56666666
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.|. ..+..+.+.+... .+++++. ++.+.+|++.... .+.... .|...|.+++|+
T Consensus 153 ~~~--------~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~v~~~~~~ 207 (466)
T COG2319 153 GHS--------ESVTSLAFSPDGK--------LLASGSSLDGTIKLWDLRTGK--------PLSTLA-GHTDPVSSLAFS 207 (466)
T ss_pred cCc--------ccEEEEEECCCCC--------EEEecCCCCCceEEEEcCCCc--------eEEeec-cCCCceEEEEEc
Confidence 544 4666677766443 6777775 9999999987521 333333 267899999999
Q ss_pred CCCC-EEEEecCCCeEEEEECCCCceee-eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 172 ISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 172 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
|++. .+++++.|+.|++||...+..+. .+..+. ... ...| ++++.++++++.|+.+++|++.....
T Consensus 208 ~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~-~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS---------DSV-VSSF--SPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC---------cce-eEeE--CCCCCEEEEecCCCcEEEeeecCCCc
Confidence 9888 55555999999999988777777 455553 222 2266 78888899999999999999997654
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe--ccccCcEEEEEEcCCCCEEEEE-eCCCeEE
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GLDSYLR 326 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~i~~s~~~~~l~s~-~~d~~v~ 326 (430)
....+..|...+.++.|+|++..+++++.|+.+.+||..+........ .| ...+..+.|.+++..++.+ ..|+.+.
T Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcEE
Confidence 344446788999999999988888889889889999998887766665 66 6679999994333555555 6889999
Q ss_pred EEeCCCCceeeEEeeccccceeEEEeeecCCcce-ee-ecCCCcEEEecCCCCC
Q 014114 327 FWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AADAPMLEIQNGNDTQ 378 (430)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~-~~~d~~v~vw~~~~~~ 378 (430)
+|++........ .... .. +..+.+.+ ... .. +..++.+.+|+.....
T Consensus 355 ~~~~~~~~~~~~--~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 355 LWDLRTGKPLKT--LEGH-SN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred eeecCCCceeEE--ecCC-ce-EEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 999988772222 2222 11 58889988 633 33 6889999999987644
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-17 Score=132.67 Aligned_cols=237 Identities=14% Similarity=0.175 Sum_probs=174.3
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEe-eccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC------ce
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC------EK 196 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~ 196 (430)
.+|+++..+|.+.+.++......+....+...+.. ..|.++|..++|. ..+|++|+. |.|+-|..... +.
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKR 99 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchh
Confidence 38999999999999998765544444444444443 4688999999998 456776655 99999987643 22
Q ss_pred eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE
Q 014114 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 276 (430)
++....+... +......|+++-. .|..+-++.++.|+.++.||+.+++ ....+++|+..|.+++--.....+++|
T Consensus 100 lwe~~~P~~~--~~~evPeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qilsG 174 (325)
T KOG0649|consen 100 LWEVKIPMQV--DAVEVPEINAMWL--DPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQILSG 174 (325)
T ss_pred hhhhcCcccc--CcccCCccceeEe--ccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcceeec
Confidence 3333322111 1111245888888 6777778888899999999999976 588999999999999985555579999
Q ss_pred cCCCCEEEEEccCCeEEeEEec---------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccce
Q 014114 277 NGSGDLASVDIRTGKLLGCFIG---------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~---------~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
++||++|+||.++++++..+.. |-...|.+++- +..+|++|+. ..+.+|.+++.++...+.++++
T Consensus 175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa~--- 248 (325)
T KOG0649|consen 175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPAR--- 248 (325)
T ss_pred CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecccc---
Confidence 9999999999999998877643 22344666665 5557877764 5699999999999999888777
Q ss_pred eEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 348 VVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 348 ~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+..+.|-.| ..++++..+.+.-|..+.
T Consensus 249 -v~~v~F~~d-~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 249 -VHLVDFVDD-CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -eeEeeeecc-eEEEeccccceeeeeecc
Confidence 466677543 447777788888888765
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.3e-16 Score=132.87 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=159.6
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc--CCeeEEEE
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRS 139 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~i~v~~ 139 (430)
+.+...|..|+.|| -++|............ ..+-.|..+-+ .. ..++..+. ...+++++
T Consensus 14 Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~--------~~~~~IvEmLF-SS---------SLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD--------TEGVSIVEMLF-SS---------SLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred ccceeEEEccCCCc-eeEEecCchHHhhccc--------CCCeEEEEeec-cc---------ceeEEEecCCCceEEEEE
Confidence 66777888899988 5677765433211110 01123333222 21 13333322 22366665
Q ss_pred eeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEe
Q 014114 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
..... .|. +......|.++.++ .+.|+++-.+ .|+|||+++.+.++++....... ..+.++
T Consensus 75 ~Kk~~--------~IC--e~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~------~gl~Al 135 (391)
T KOG2110|consen 75 FKKKT--------TIC--EIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP------KGLCAL 135 (391)
T ss_pred cccCc--------eEE--EEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCc------cceEee
Confidence 54322 222 22335678888886 3566656555 49999999999998887653221 224444
Q ss_pred EEeeCCCCCEEEEEe--CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC-EEEEEccCCeEEeEE
Q 014114 220 AFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCF 296 (430)
Q Consensus 220 ~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~ 296 (430)
.+ ++.+.+++.-+ ..|.|.+||+.+-+ ++..+..|.+++.+++|+++|.+||+++..|+ ||||.+.+|+.+++|
T Consensus 136 S~--n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 136 SP--NNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred cc--CCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 44 66667887633 57899999999854 68999999999999999999999999999998 789999999999998
Q ss_pred ecc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 297 IGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 297 ~~~-~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+-. -...|.+++|+|++++|++.+..++|.||.+..
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 732 245789999999999999999999999998753
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.2e-17 Score=142.12 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=193.2
Q ss_pred eEEEEccCCeEEEeccCCCceee---eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 67 LLAVARKNGLTDILNPLNGDLRV---AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
.|++|+.|..|+||-++.+..-. .+..+.. .+.|...+.++.+.+.. +.+++|+.+|.+.+|-....
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~--Ls~H~~aVN~vRf~p~g--------elLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSS--LSRHTRAVNVVRFSPDG--------ELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeec--ccCCcceeEEEEEcCCc--------CeeeecCCCceEEEEEecCc
Confidence 89999999999999987654332 2222221 12566788888887644 49999999999999987632
Q ss_pred ccc---c-c---CCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcce
Q 014114 144 KVS---A-E---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 144 ~~~---~-~---~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
... . . ...-.++.-...|...|..++|+|+++++++++.|+.+++||+..|+.+..+..|. ..+
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~---------~yv 168 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE---------HYV 168 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc---------ccc
Confidence 110 0 0 00112222233477889999999999999999999999999999999998888776 678
Q ss_pred eEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee-------------------ecC----CCeEEEEeeCCCCEE
Q 014114 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-------------------FRE----TPIKAVAEEPDSFNI 273 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------------------~~~----~~i~~~~~s~~~~~l 273 (430)
..++| .|-++++++-+.|...+.+.+...+. +.... .|. .-.+.++|+|+|.++
T Consensus 169 qgvaw--Dpl~qyv~s~s~dr~~~~~~~~~~~~-~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 169 QGVAW--DPLNQYVASKSSDRHPEGFSAKLKQV-IKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ceeec--chhhhhhhhhccCcccceeeeeeeee-eeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 89999 88999999988888777776654221 11100 111 124457899999999
Q ss_pred EEEcC----CC-----CEEEEEccC-CeEEeEEeccccCcEEEEEEcC------------------CCCEEEEEeCCCeE
Q 014114 274 YIGNG----SG-----DLASVDIRT-GKLLGCFIGKCSGSIRSIARHP------------------TLPIIASCGLDSYL 325 (430)
Q Consensus 274 ~~~~~----dg-----~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~s~------------------~~~~l~s~~~d~~v 325 (430)
++.+. .+ ..++|+-.. .++...+... ..++..+.|+| -.-.++.++ -..|
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv 323 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV 323 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCC-CcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence 87542 12 234444322 2344445444 45555566654 122345555 4579
Q ss_pred EEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+|||.++-.++..+ -.-| -..+++++|++||.+ +..+.||...+-....
T Consensus 324 yvydtq~~~P~~~v-~nih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVV-DNIH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEeccccccceEEE-eeee-eeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 99999998888774 2224 344799999999999 9999999887755443
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=9.5e-18 Score=136.55 Aligned_cols=287 Identities=14% Similarity=0.083 Sum_probs=192.0
Q ss_pred cceEeec----CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccC-------CeEEEeccC
Q 014114 15 LRALTFD----SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKN-------GLTDILNPL 83 (430)
Q Consensus 15 ~~l~t~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d-------g~i~iwd~~ 83 (430)
.++++|. .|+.|.+-+++.+ +-..+...|..|.+.+.-++.++.+ ..+|++...+ -.+.||.+.
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e--~s~l~skvf~h~agEvw~las~P~d---~~ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSE--GSELLSKVFFHHAGEVWDLASSPFD---QRILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCc--cchhhhhhhhcCCcceehhhcCCCC---CceEEEEEeccCCCcceeeEEEEecc
Confidence 5666665 4678888887753 2223345666677776655555422 2455554332 237899885
Q ss_pred CCceee---eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec
Q 014114 84 NGDLRV---AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
...-.. .+.....+.. ..-..+.|+.|-++.. .+++-. +..|.+|+++.++..... ...--...
T Consensus 102 e~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~--------klasm~-dn~i~l~~l~ess~~vae---v~ss~s~e 168 (370)
T KOG1007|consen 102 EPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSD--------KLASMD-DNNIVLWSLDESSKIVAE---VLSSESAE 168 (370)
T ss_pred cccCccccchhhHhhcCCH-HHhCceeeEEEcCCCC--------eeEEec-cCceEEEEcccCcchhee---eccccccc
Confidence 432111 1111111111 1123788888887544 555444 889999999876642100 00000111
Q ss_pred cCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCC
Q 014114 161 ASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH 237 (430)
Q Consensus 161 ~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg 237 (430)
+....++-+|+| +++.+++ ..|+++..||+++..+...++... ...|..+.| +|+. .+|++|+.||
T Consensus 169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDf--Npnkq~~lvt~gDdg 237 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDF--NPNKQHILVTCGDDG 237 (370)
T ss_pred ccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhh--------cceeeeccC--CCCceEEEEEcCCCc
Confidence 234566678888 7777775 457799999999988877776432 256899999 5654 4688999999
Q ss_pred cEEEEECCCCCcceEEeeecCCCeEEEEeeCC-CCEEEEEcCCCCEEEEEccCC--------------------------
Q 014114 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-------------------------- 290 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~-------------------------- 290 (430)
.|++||++..+.|+..+.+|...|.++.|+|. .++|++|+.|..|.+|....-
T Consensus 238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 99999999988899999999999999999985 478899999999999975420
Q ss_pred ---eEEeEEeccccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCC
Q 014114 291 ---KLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIK 331 (430)
Q Consensus 291 ---~~~~~~~~~~~~~v~~i~~s~~~~~-l~s~~~d~~v~iwd~~ 331 (430)
..+.++..| ...|++++|+.-.++ +|+-+.||.+.|=.+.
T Consensus 318 L~dg~l~tydeh-EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 318 LQDGQLETYDEH-EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccc-ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 123455666 899999999986665 6788999999887664
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8.3e-19 Score=155.06 Aligned_cols=258 Identities=17% Similarity=0.204 Sum_probs=179.3
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
.+.+..+.+.+... .+++++.+|.+.+|++............+|..|+ .|.++|.|+++.+++.++++|+-
T Consensus 294 ~d~ir~l~~~~sep--------~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 294 DDCIRALAFHPSEP--------VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred hhhhhhhhcCCCCC--------eEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeecc
Confidence 34455555555444 8999999999999999554444444556777787 58999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeecCC-CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--cCC
Q 014114 183 GVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RET 259 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~ 259 (430)
||+|+.|++....--...... .....-..|.+.+..+++ ++....|++++.||++++|+..... + ..+.. ...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g 440 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHG 440 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeee--cccccceeeecCCceEEeeccCCcC-c-cccCCccccC
Confidence 999999977532111110000 000011123467888899 7777889999999999999987643 3 22222 123
Q ss_pred CeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEecc------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 260 PIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 260 ~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.-.++.+-... ..+++...-+.-.++++.....+..+... ....+..+.++|.+.+.+++..|+.|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 34455553322 22333333333444555544444443321 024578899999999999999999999999999
Q ss_pred CceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 333 RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+++++. ...|... ++++++.|+|.+ ++++.|+.+++|....
T Consensus 521 ~~~l~s--~~a~~~s-vtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 521 GKILHS--MVAHKDS-VTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cccchh--eeeccce-ecceeecCCCceEEeecCCceeehhhccc
Confidence 999998 5567555 599999999999 9999999999999865
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.5e-17 Score=154.21 Aligned_cols=280 Identities=14% Similarity=0.094 Sum_probs=195.9
Q ss_pred CeEEEeccCCC-ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcce
Q 014114 75 GLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 75 g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~ 153 (430)
+.+.||++... .....+.. ...+.++.+.+.+. ..++.|..+|.|.+|++....... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~---------~s~v~~~~f~p~~p-------~ll~gG~y~GqV~lWD~~~~~~~~---~s~ 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES---------PSEVTCLKFCPFDP-------NLLAGGCYNGQVVLWDLRKGSDTP---PSG 282 (555)
T ss_pred ceEEEEecCCCCCceEEEec---------CCceeEEEeccCCc-------ceEEeeccCceEEEEEccCCCCCC---Ccc
Confidence 47999998765 33333322 13788888877655 488999999999999998655410 113
Q ss_pred eeEEeeccCCceEEEEEcCCC--CEEEEecCCCeEEEEECCCCce---eeeecCCCCCCCCcccCcceeEeEEeeCCCCC
Q 014114 154 VKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (430)
+......|..++..+.|..+. .-+++++.||.|..|+++.-.. ...+...............++++.|. ..+.+
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p~ 361 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDPN 361 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec-cCCCc
Confidence 334455678889999986644 4489999999999998764322 11111111001111122568899996 45677
Q ss_pred EEEEEeCCCcEEEEE---CCCCC----cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccc
Q 014114 229 KFVAGTNDHQVRLYD---TSAQR----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKC 300 (430)
Q Consensus 229 ~l~~~~~dg~i~~wd---~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~ 300 (430)
.|++|+.+|.|..-+ .+... +++..+..|.++|+++.++|=+..++..+.|.+|+||... ...++..+..+
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~- 440 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS- 440 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-
Confidence 899999999988733 33222 2244566788999999999987666655569999999987 66777777776
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 301 SGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 301 ~~~v~~i~~s~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
...|++++|||... .|+++..||.|.|||+.....-........ ..+.+.+.|++.|++ ++|...|.+++|++..
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 77899999999774 577778899999999975443322213223 455688899999999 8899999999999865
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=2.4e-15 Score=141.20 Aligned_cols=294 Identities=20% Similarity=0.285 Sum_probs=211.3
Q ss_pred cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc-eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCC
Q 014114 45 WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
+..+... +....+ .+.+..++.++.|+.+.+|+...+. .+..+..... ..+..+... ... ..
T Consensus 61 ~~~~~~~--i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~-----~~ 123 (466)
T COG2319 61 LRGHEDS--ITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVSKLALS-SPD-----GN 123 (466)
T ss_pred eeeccce--EEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------CceeeEEEE-CCC-----cc
Confidence 3345555 444455 5567789999999999999997776 5555554221 234444442 111 11
Q ss_pred ceEEEEcc-CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeec
Q 014114 124 RTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 124 ~~~~~~~~-~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~ 201 (430)
..++..+. ++.+.+|++... .........|...|..++|+|++.++++++. ++.+++|++..+..+..+.
T Consensus 124 ~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 124 SILLASSSLDGTVKLWDLSTP--------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred eEEeccCCCCccEEEEEecCC--------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec
Confidence 14444444 889999998740 1222223356778899999999998888885 9999999999877777777
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceE-EeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
.|. ..+.+++| +|++. .+++++.|+.|++||...+.. .. .+..|.... ...|+|++.++++++.|
T Consensus 196 ~~~---------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 196 GHT---------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred cCC---------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence 654 67999999 68887 555558999999999886443 44 577777765 44899999899999999
Q ss_pred CCEEEEEccCCeE-EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 280 GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 280 g~v~iwd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
+.+++|++..... +..+..| ...|.++.|+|++..+++++.|+.+.+||+.+...........|.. .+..+.|.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 340 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDG 340 (466)
T ss_pred CcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCC
Confidence 9999999987664 4455565 8899999999988888889999999999998887776643224533 46888884332
Q ss_pred ce-eee-cCCCcEEEecCCCCC
Q 014114 359 VA-NAA-ADAPMLEIQNGNDTQ 378 (430)
Q Consensus 359 ~~-~~~-~~d~~v~vw~~~~~~ 378 (430)
.. +.+ ..|+.+.+|+.....
T Consensus 341 ~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CEEEEeecCCCcEEeeecCCCc
Confidence 34 444 677899999887754
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=5.2e-17 Score=132.44 Aligned_cols=296 Identities=15% Similarity=0.112 Sum_probs=190.6
Q ss_pred EEEeccCCCCCC-ceEEEEcc----CCeEEEeccC--CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 54 VLAASIDDSQND-PLLAVARK----NGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 54 ~~~~~~~~~p~g-~~l~~g~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
..++.|...|+. .+||.|+. ...|.|..+. +++.+..-. ..+.-+++.+.|.+..... ....|
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~---~pdlL 116 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKGV---YPDLL 116 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCcccc---Ccchh
Confidence 444444334543 46787773 3455555443 222222111 2344577778888766421 22233
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCce---eeeecC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWTAKP 202 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~ 202 (430)
++ .+..+++|.+...........-...--+..+..+++++.|+. +.++|.+++-|-+..|||++++.. -..+..
T Consensus 117 AT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 AT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 33 345799999875321100000000000223457899999987 778899999999999999998732 333444
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec--CCCeEEEEeeCCC-CEEEEEcCC
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FNIYIGNGS 279 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~i~~~~~s~~~-~~l~~~~~d 279 (430)
|. ..|..++|. ...-+.|++.+.||.|++||++..+.....++.. ..+...++|+++. +++|+-..|
T Consensus 195 HD---------KEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 195 HD---------KEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred cC---------cceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 44 669999994 2234689999999999999999866544444432 4678889998754 677776655
Q ss_pred -CCEEEEEccCC-eEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce--eeEEeeccccceeEEEeee
Q 014114 280 -GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 280 -g~v~iwd~~~~-~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~i~~~~~ 354 (430)
..|.|.|++.. .++..+.+| .+.|+.|+|.|.. ..|++++.|.++.|||+.+.-. +....+.-..++.|..+.|
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~W 343 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQW 343 (364)
T ss_pred CceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeee
Confidence 56999999864 578889998 9999999999965 6899999999999999975322 1111111123445799999
Q ss_pred cCCcce-eeecCCCcEEEe
Q 014114 355 ADKEVA-NAAADAPMLEIQ 372 (430)
Q Consensus 355 s~~g~~-~~~~~d~~v~vw 372 (430)
++...= ++...+..+.+.
T Consensus 344 s~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 344 SSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred cccCCCEEEEEecCeeeEE
Confidence 975443 666666666553
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=6e-17 Score=150.17 Aligned_cols=286 Identities=13% Similarity=0.071 Sum_probs=191.4
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce--eeeeeecCCCCCC
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQ 100 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~ 100 (430)
++.+.||++... ..+. ..+. -...+.++.++.. +..+|+.|..+|.|.+||+..+.. ...+..+ ..
T Consensus 221 ~~~~~vW~~~~p--~~Pe--~~~~-~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~----~~ 288 (555)
T KOG1587|consen 221 DGVLLVWSLKNP--NTPE--LVLE-SPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL----EV 288 (555)
T ss_pred CceEEEEecCCC--CCce--EEEe-cCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccccc----cc
Confidence 348999999873 1122 1221 3345556666552 235788899999999999987665 2222221 12
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeE---EeeccCCceEEEEEcC-CCCE
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDI-SEKF 176 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~---~~~~~~~~i~~~~~~~-~~~~ 176 (430)
.+..++..+.|..... . ..+++++.||.|..|++..-............. -.......+++++|.+ +...
T Consensus 289 sh~~~v~~vvW~~~~~-----~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEH-----N-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred cCCcCeEEEEEeccCC-----C-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 4557888888877544 2 469999999999999876443211100000000 0111234688999988 5667
Q ss_pred EEEecCCCeEEEEECCCCcee--eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 177 SLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 177 l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
+++|+..|.|..=+....+.. ..++.+. ....|.+.|.++.+ +|-...++..+.|.+++||.......|+..+
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~---~~~~h~g~v~~v~~--nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~ 437 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHS---TFITHIGPVYAVSR--NPFYPKNFLSVGDWTVRIWSEDVIASPLLSL 437 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccc---cccccCcceEeeec--CCCccceeeeeccceeEeccccCCCCcchhh
Confidence 888999999887443322211 1112221 12224478999999 6666555444459999999998556688888
Q ss_pred eecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCC--eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..+...+++++|||-. ..|+++..||.|.+||+... .++.+..-+ ....+.+.|++.|+.|+.|...|.+.+|++.
T Consensus 438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 8888889999999965 57888889999999999754 344454444 5677888999999999999999999999985
Q ss_pred C
Q 014114 332 T 332 (430)
Q Consensus 332 ~ 332 (430)
.
T Consensus 517 ~ 517 (555)
T KOG1587|consen 517 E 517 (555)
T ss_pred c
Confidence 3
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=9.5e-16 Score=138.76 Aligned_cols=268 Identities=12% Similarity=0.089 Sum_probs=166.2
Q ss_pred EEEccCCeEEEeccCC-Cc--eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCeeEEEEeeeec
Q 014114 69 AVARKNGLTDILNPLN-GD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTK 144 (430)
Q Consensus 69 ~~g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~v~~~~~~~ 144 (430)
++...++.|.+|++.+ ++ .+..+... .....+.+.+.. ..|+++ ..++.+.+|++...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---------~~~~~l~~spd~--------~~lyv~~~~~~~i~~~~~~~~- 67 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP---------GQVQPMVISPDK--------RHLYVGVRPEFRVLSYRIADD- 67 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC---------CCCccEEECCCC--------CEEEEEECCCCcEEEEEECCC-
Confidence 3346789999999964 33 22222210 123334444322 255444 55788888988521
Q ss_pred ccccCCcceeeEE-eeccCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCCc-e---eeeecCCCCCCCCcccCcceeE
Q 014114 145 VSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCE-K---IWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 145 ~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~-~---~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
+.+... .....+....++|+|++++|++++. ++.|.+|++.+.. . +..+.. ......
T Consensus 68 -------g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~----------~~~~~~ 130 (330)
T PRK11028 68 -------GALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG----------LEGCHS 130 (330)
T ss_pred -------CceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC----------CCcccE
Confidence 111111 1122345678999999998887764 7899999996432 1 111111 123566
Q ss_pred eEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcce------EEeeecCCCeEEEEeeCCCCEEEEEcC-CCCEEEEEccC-
Q 014114 219 AAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPV------MSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT- 289 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~v~iwd~~~- 289 (430)
+++ +|+++++++++ .++.|.+||+.+..... .... .......++|+|++++++++.. ++.|.+|++..
T Consensus 131 ~~~--~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 131 ANI--DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred eEe--CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 778 88998886554 56999999997633211 1111 1234678999999999988876 89999999973
Q ss_pred -C--eEEeEEecc-----ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccc--cceeEEEeeecCCc
Q 014114 290 -G--KLLGCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQH--LNEVVFDSAFADKE 358 (430)
Q Consensus 290 -~--~~~~~~~~~-----~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~--~~~~i~~~~~s~~g 358 (430)
+ +.+..+... .......+.|+|++++|+++. .++.|.+|++........ +.++ .......+.|+|||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~--~~~~~~~~~~p~~~~~~~dg 285 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS--FEGHQPTETQPRGFNIDHSG 285 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE--EeEEEeccccCCceEECCCC
Confidence 3 334444321 012234689999999998886 478999999865332111 1111 11124678999999
Q ss_pred ce-ee-ecCCCcEEEecCCC
Q 014114 359 VA-NA-AADAPMLEIQNGND 376 (430)
Q Consensus 359 ~~-~~-~~~d~~v~vw~~~~ 376 (430)
++ ++ ...++.|.+|+.+.
T Consensus 286 ~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CEEEEEEccCCcEEEEEEcC
Confidence 99 44 44589999998764
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.2e-18 Score=149.20 Aligned_cols=291 Identities=13% Similarity=0.143 Sum_probs=195.9
Q ss_pred eEeecCCCcEEEE--EecCcc----CC----c-------chhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEE
Q 014114 17 ALTFDSLGLIKVI--EARGED----GG----V-------PKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDI 79 (430)
Q Consensus 17 l~t~~~dg~i~vw--~~~~~~----~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i 79 (430)
.++.+.+...++| ++..-. .. . .....++..|...++.+++ +|....|++++.||.|.+
T Consensus 245 ~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~----~~sep~lit~sed~~lk~ 320 (577)
T KOG0642|consen 245 SVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAF----HPSEPVLITASEDGTLKL 320 (577)
T ss_pred cccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhc----CCCCCeEEEeccccchhh
Confidence 5777788888888 433210 00 0 0111133345555444444 445567999999999999
Q ss_pred eccCC--------CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCc
Q 014114 80 LNPLN--------GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC 151 (430)
Q Consensus 80 wd~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~ 151 (430)
|++.. -+.+.++.+ |..+|.|+.+..... .+++++.||+|+.|++....+.-.+.+
T Consensus 321 WnLqk~~~s~~~~~epi~tfra--------H~gPVl~v~v~~n~~--------~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 321 WNLQKAKKSAEKDVEPILTFRA--------HEGPVLCVVVPSNGE--------HCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred hhhcccCCccccceeeeEEEec--------ccCceEEEEecCCce--------EEEeeccCceeeeeccCCCCCcccccC
Confidence 99932 123344444 558999998877555 999999999999998873332211111
Q ss_pred -ceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE
Q 014114 152 -STVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 152 -~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
..+.-.-..|...++.+++++....|++++.||+|++|+...... .++...... ..-.++.|. +.+-.+.
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-------g~Plsvd~~-ss~~a~~ 455 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-------GYPLSVDRT-SSRPAHS 455 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-------CCcceEeec-cchhHhh
Confidence 122333346788999999999999999999999999999876555 223322211 234455552 1121233
Q ss_pred EEEeCCCcEEEEECCCCCcceEEeeec-------CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc
Q 014114 231 VAGTNDHQVRLYDTSAQRRPVMSFDFR-------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 231 ~~~~~dg~i~~wd~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
++...-+.-.++++..... +..+... ...+..+.++|.+.+.+++..|+.|+++|..++.+++....| ...
T Consensus 456 ~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~s 533 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDS 533 (577)
T ss_pred hhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec-cce
Confidence 3333333333444443322 2222211 135677888999999999999999999999999999999998 899
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
++++++.|+|.+|++++.|+.+++|.+....++..
T Consensus 534 vtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 534 VTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred ecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 99999999999999999999999999877666654
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=4.9e-17 Score=146.69 Aligned_cols=258 Identities=12% Similarity=0.121 Sum_probs=190.0
Q ss_pred CcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCC
Q 014114 24 GLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED 103 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 103 (430)
..+.+||...+ .+.+++.+|...+.+++++. ||+.+|+|+.|..|.||+.. ....++- .|.
T Consensus 33 ~rlliyD~ndG-----~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~k---lEG~LkY-------SH~ 93 (1081)
T KOG1538|consen 33 SRLLVYDTSDG-----TLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSK---LEGILKY-------SHN 93 (1081)
T ss_pred CEEEEEeCCCc-----ccccccccccceEEEEEEcc----CCceeccCCCceeEEEeccc---ccceeee-------ccC
Confidence 57999999987 78899999999988888865 78899999999999999753 3333332 355
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (430)
+.|.|+.+.+... .+++++- ...-+|+.+.. .+..+. ....+.+.+|..+|++++.|-.+
T Consensus 94 D~IQCMsFNP~~h--------~LasCsL-sdFglWS~~qK---------~V~K~k--ss~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 94 DAIQCMSFNPITH--------QLASCSL-SDFGLWSPEQK---------SVSKHK--SSSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred CeeeEeecCchHH--------Hhhhcch-hhccccChhhh---------hHHhhh--hheeEEEeeecCCCcEEEEeccC
Confidence 7888888876544 6666654 34556654422 222122 23568889999999999999999
Q ss_pred CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC---CCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC
Q 014114 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 184 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 260 (430)
|+|.+-+- +++.-..+..+.+. ..+|.+++|.|+.. ...+++.....++.+|.+.. +. +..-+.-...
T Consensus 154 GTIsiRNk-~gEek~~I~Rpgg~------Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~-Igk~r~L~Fd 224 (1081)
T KOG1538|consen 154 GTISIRNK-NGEEKVKIERPGGS------NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQ-IGKDRALNFD 224 (1081)
T ss_pred ceEEeecC-CCCcceEEeCCCCC------CCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-ee-ecccccCCCC
Confidence 99998764 33333333322211 26799999953211 24678888888888888764 32 3222222345
Q ss_pred eEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..|+++-++|.+++.|+.|+.+++|- +.|-.+.++... ...|+.++..|+++.++.|+.||+|..|++-
T Consensus 225 P~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred chhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 57899999999999999999999997 468888888775 8899999999999999999999999999874
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.9e-15 Score=136.78 Aligned_cols=280 Identities=11% Similarity=0.102 Sum_probs=168.6
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEE-ccCCeEEEeccC-CCceeeeeeec
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVA-RKNGLTDILNPL-NGDLRVAISNA 94 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g-~~dg~i~iwd~~-~~~~~~~~~~~ 94 (430)
.++...++.|.+|++... +...++..+... .....+ .+ +|++++|+++ ..++.|.+|++. +++. ......
T Consensus 5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~-~~~~~l--~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~ 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--GALTLLQVVDVP-GQVQPM--VI--SPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES 76 (330)
T ss_pred EEEcCCCCCEEEEEECCC--CceeeeeEEecC-CCCccE--EE--CCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee
Confidence 345577899999999642 222344445432 222233 44 6788888775 458889999986 3332 222211
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEc-cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
. .......+.+.+..+ .++++. .++.+.+|++...... ...+. .........+++++|+
T Consensus 77 ~------~~~~p~~i~~~~~g~--------~l~v~~~~~~~v~v~~~~~~g~~----~~~~~--~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 77 P------LPGSPTHISTDHQGR--------FLFSASYNANCVSVSPLDKDGIP----VAPIQ--IIEGLEGCHSANIDPD 136 (330)
T ss_pred c------CCCCceEEEECCCCC--------EEEEEEcCCCeEEEEEECCCCCC----CCcee--eccCCCcccEeEeCCC
Confidence 1 011234455554333 555554 5888999998532111 01111 1122345677899999
Q ss_pred CCEEEEec-CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CCcEEEEECCCC--C-
Q 014114 174 EKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQ--R- 248 (430)
Q Consensus 174 ~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~--~- 248 (430)
+++++++. .++.|.+||+.+...+........ ..........+.| +|++++++++.. ++.|.+|++... .
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~---~~~~g~~p~~~~~--~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV---TTVEGAGPRHMVF--HPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCce---ecCCCCCCceEEE--CCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 99886554 568999999976432211000000 0000133567888 899999988876 899999999742 1
Q ss_pred cceEEeeec------CCCeEEEEeeCCCCEEEEEcC-CCCEEEEEccCCe----EEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 249 RPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 249 ~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
..+..+... ......+.++|++++|+++.. ++.|.+|++.... .+..+.. ......+.|+|+|++|+
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLI 289 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEE
Confidence 112222221 112346889999999999864 6889999986432 2333322 23456889999999998
Q ss_pred EEeC-CCeEEEEeCC
Q 014114 318 SCGL-DSYLRFWDIK 331 (430)
Q Consensus 318 s~~~-d~~v~iwd~~ 331 (430)
++.. +++|.+|++.
T Consensus 290 va~~~~~~v~v~~~~ 304 (330)
T PRK11028 290 AAGQKSHHISVYEID 304 (330)
T ss_pred EEEccCCcEEEEEEc
Confidence 8775 8999999874
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=5.9e-17 Score=142.59 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=153.5
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
....++.++.||.+.+.+-... +..---.|.+.+.+-.|+|+|.-|++++.||.|++|.-. |-...++.
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~r----------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~ 142 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSAR----------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVV 142 (737)
T ss_pred CcceEEEEcCCceEEEecccch----------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHh
Confidence 4458999999999988764321 111111467889999999999999999999999999853 32222222
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 281 (430)
... ..|.|++| .|+.+.++.+ ..+.+.+=.+.... .+...++|.+-|.++.|++...++++|++|-.
T Consensus 143 Q~~---------~~v~c~~W--~p~S~~vl~c-~g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 143 QNE---------ESIRCARW--APNSNSIVFC-QGGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred hcC---------ceeEEEEE--CCCCCceEEe-cCCeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 211 56999999 6777666654 34566666665534 36788999999999999999999999999999
Q ss_pred EEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-
Q 014114 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~- 360 (430)
.+|||. .|+.++.-..| ..+|++++|+|+ ..++.++.+ ++| +.....+.|..++||+||..
T Consensus 210 fKvWD~-~G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~n-t~R--------------~~~p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 210 FKIWDA-QGANLFTSAAE-EYAITSVAFNPE-KDYLLWSYN-TAR--------------FSSPRVGSIFNLSWSADGTQA 271 (737)
T ss_pred EEeecc-cCcccccCChh-ccceeeeeeccc-cceeeeeee-eee--------------ecCCCccceEEEEEcCCCcee
Confidence 999997 58888888887 899999999999 666666542 344 11122334799999999999
Q ss_pred eeecCCCcEEE
Q 014114 361 NAAADAPMLEI 371 (430)
Q Consensus 361 ~~~~~d~~v~v 371 (430)
+.+...|.+.+
T Consensus 272 a~gt~~G~v~~ 282 (737)
T KOG1524|consen 272 TCGTSTGQLIV 282 (737)
T ss_pred eccccCceEEE
Confidence 55666666654
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=132.89 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=169.5
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee------
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------ 197 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~------ 197 (430)
++|+++...|.+++|.+.... .+..|+..+...|+.+..-|+ ..+.+-+.|..+.+|++.-+..+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r--------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~ 96 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTER--------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIV 96 (323)
T ss_pred hhhhcccccceEEEEEeecCc--------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeee
Confidence 379999999999999998655 444566566778888888876 56777888999999988652111
Q ss_pred --------eeecCCCC-----------C--C---------C--------CcccCcceeEeEEeeCCCCC--EEEEEeCCC
Q 014114 198 --------WTAKPPPK-----------N--S---------L--------GIFTPTWFTSAAFLSIDDHR--KFVAGTNDH 237 (430)
Q Consensus 198 --------~~~~~~~~-----------~--~---------~--------~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg 237 (430)
..+..... . . . .....+.+.+..+. ..++. +++.|.++|
T Consensus 97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESG 175 (323)
T ss_pred ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCC
Confidence 11100000 0 0 0 00011234444431 12222 567788999
Q ss_pred cEEEEECCCCCc---------ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC--eE--EeEEeccccCcE
Q 014114 238 QVRLYDTSAQRR---------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--KL--LGCFIGKCSGSI 304 (430)
Q Consensus 238 ~i~~wd~~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~--~~~~~~~~~~~v 304 (430)
.+.+||+.++.. .+.....|..+|.++.|.+.-..=++|+.+..+..|++... .+ ..++... ...|
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv 254 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGV 254 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec-CCCc
Confidence 999999998532 12233458899999999887667788888888999988632 22 2222222 4578
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
..+..-||++.+|++++|+.||||.-++..+++. +..|..+ |.+++|+|+..+ ++++.|+.|.+|++
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--LkyHsag-vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--LKYHSAG-VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhh--hhhhhcc-eeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999998 7778644 699999999777 99999999999985
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2e-15 Score=140.67 Aligned_cols=330 Identities=13% Similarity=0.041 Sum_probs=215.3
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhheecC--CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC--Cce
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWG--DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN--GDL 87 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~--~~~ 87 (430)
|+...+...--+..+.+|....+. ........ .|.-..++.++ +|.+.++|+|..||+|.+|.-.. +..
T Consensus 169 ~~~ge~~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~~t~~~~----spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 169 NNSGEFKGIVHMCKIHIYFVPKHT---KHTSSRDITVHHTFNITCVAL----SPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred cCCceEEEEEEeeeEEEEEecccc---eeeccchhhhhhcccceeEEe----ccccceEEEeccCCcEEEEecccccccc
Confidence 333444444445667888887631 01111111 13333334444 66788999999999999996433 222
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEE
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
...-..|| |.+.|.++.+..... +|++|+..|.+.+|.++... +.+-..-+.+|..
T Consensus 242 ~t~t~lHW------H~~~V~~L~fS~~G~--------~LlSGG~E~VLv~Wq~~T~~----------kqfLPRLgs~I~~ 297 (792)
T KOG1963|consen 242 ETCTLLHW------HHDEVNSLSFSSDGA--------YLLSGGREGVLVLWQLETGK----------KQFLPRLGSPILH 297 (792)
T ss_pred ccceEEEe------cccccceeEEecCCc--------eEeecccceEEEEEeecCCC----------cccccccCCeeEE
Confidence 22222244 335788888877444 99999999999999988643 2344455789999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC--CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
+.++|++.+.+....|+.|.+....+......+.+.... .+......-.+.+.+ +|..+.++..+..|.|.+||+.
T Consensus 298 i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i--dpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 298 IVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI--DPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred EEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE--cCCCCceeecCCCceEEEEecc
Confidence 999999999999999999999988776655555443322 001111234566777 7777788888999999999998
Q ss_pred CCCcceEEeee-----c------CCCeEEEEeeCCCCEEEEEc--------CCC--CEEEEEccCCe----EEeEEeccc
Q 014114 246 AQRRPVMSFDF-----R------ETPIKAVAEEPDSFNIYIGN--------GSG--DLASVDIRTGK----LLGCFIGKC 300 (430)
Q Consensus 246 ~~~~~~~~~~~-----~------~~~i~~~~~s~~~~~l~~~~--------~dg--~v~iwd~~~~~----~~~~~~~~~ 300 (430)
+... +..+.. + .-.++.++.+-.|.+++|.- .|| .+++|-..... +...+...|
T Consensus 376 td~~-i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH 454 (792)
T KOG1963|consen 376 TDST-IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH 454 (792)
T ss_pred ccce-eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC
Confidence 7553 333321 1 22577777788899998863 333 36788665332 333333333
Q ss_pred cCcEEEEEEc-CCCC-EEEEEeCCCeEEEEeCCCCce------eeEEe--eccccceeEEEeeecCCcceeeecCCCcEE
Q 014114 301 SGSIRSIARH-PTLP-IIASCGLDSYLRFWDIKTRQL------LSAVF--LKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 301 ~~~v~~i~~s-~~~~-~l~s~~~d~~v~iwd~~~~~~------~~~~~--~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~ 370 (430)
...+...++. +... .+++++.||.++||-+...+. ..... -.-| ...+.+++|+.||..++++.++.|.
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~i~a~~fs~dGslla~s~~~~It 533 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTPITALCFSQDGSLLAVSFDDTIT 533 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc-cCcccchhhcCCCcEEEEecCCEEE
Confidence 5555555444 4333 799999999999998833221 11110 1112 3446899999999999999999999
Q ss_pred EecCCC
Q 014114 371 IQNGND 376 (430)
Q Consensus 371 vw~~~~ 376 (430)
+||...
T Consensus 534 iwd~~~ 539 (792)
T KOG1963|consen 534 IWDYDT 539 (792)
T ss_pred EecCCC
Confidence 999987
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.2e-17 Score=139.00 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=139.9
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC------CcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEE
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ------RRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLA 283 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~ 283 (430)
.|...|..++|+ ..+.+.||+|+.|.+|.||.+..+ ..++..+.+|...|-.++|+|.- +.|++++.|..|.
T Consensus 79 GHt~~vLDi~w~-PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 79 GHTAPVLDIDWC-PFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred CccccccccccC-ccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 355789999996 346678999999999999998642 34688899999999999999965 6788999999999
Q ss_pred EEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeee
Q 014114 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~ 363 (430)
+||+.+++.+.++. | ..-|+++.|+.+|.+|++.+.|..|||||.++++.+.. -.+|.+..-..+.|-.+|.+++.
T Consensus 158 iWnv~tgeali~l~-h-pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 158 IWNVGTGEALITLD-H-PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEeccCCceeeecC-C-CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEEeccCceeee
Confidence 99999999998887 6 99999999999999999999999999999999999988 46776666677888889888443
Q ss_pred ----cCCCcEEEecCCCCCC
Q 014114 364 ----ADAPMLEIQNGNDTQE 379 (430)
Q Consensus 364 ----~~d~~v~vw~~~~~~~ 379 (430)
..+..+.+|+...+.+
T Consensus 234 Gfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred ccccccccceeccCcccccC
Confidence 3567899999887554
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.8e-18 Score=148.28 Aligned_cols=254 Identities=9% Similarity=0.067 Sum_probs=193.9
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
..+|.+|+.|+.-|.|..+|+.++++...+.... .|..+.|+.+. .+++......++|||-.
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E---------tv~Dv~~LHne---------q~~AVAQK~y~yvYD~~ 199 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME---------TVRDVTFLHNE---------QFFAVAQKKYVYVYDNN 199 (545)
T ss_pred cCCccEEEecCCccceeeeecccceeeeeeehhh---------hhhhhhhhcch---------HHHHhhhhceEEEecCC
Confidence 6678899999999999999999999988887633 45556666543 46666677788888743
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
. +.+..+.....|..+.|-|.--+|++++..|.+..-|+.+|+.+..+.... +.+..+.-
T Consensus 200 G-----------tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~vm~q 259 (545)
T KOG1272|consen 200 G-----------TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTDVMKQ 259 (545)
T ss_pred C-----------cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccchhhc
Confidence 2 123333445678889999988899999999999999999999988877654 34555555
Q ss_pred eeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecccc
Q 014114 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (430)
+|-+..+-+|..+|+|.+|..... .|+..+..|.++|.+|++.++|+|++|.+.|..++|||++....+.++.. .
T Consensus 260 --NP~NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p 334 (545)
T KOG1272|consen 260 --NPYNAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--P 334 (545)
T ss_pred --CCccceEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--C
Confidence 788888999999999999999884 47888888999999999999999999999999999999998887777665 3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCc-eeeEEeeccccceeEEEeeecCCcce
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWD-IKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd-~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
.+...++||..| +++++....|.||. .-.+. .....++.-.....|..+.|.|-..+
T Consensus 335 ~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv 393 (545)
T KOG1272|consen 335 HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV 393 (545)
T ss_pred CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence 467788898776 34444556799994 22221 22222333334556899999986555
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=6.8e-16 Score=125.97 Aligned_cols=284 Identities=14% Similarity=0.102 Sum_probs=189.0
Q ss_pred cceEeec----CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCC---ceEEEEccCCeEEEeccCCCce
Q 014114 15 LRALTFD----SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQND---PLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 15 ~~l~t~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
.||+.|+ ..+.|.|-.+.. +.+......+ -.|+-+++-+.+.+ .+.| ++||+. +..+++|.+...+.
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~-~s~e~~~~a~-fd~~YP~tK~~wiP--d~~g~~pdlLATs--~D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDE-DSGELVEDAN-FDHPYPVTKLMWIP--DSKGVYPDLLATS--SDFLRLWRIGDEES 133 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEcc-CCCceeccCC-CCCCCCccceEecC--CccccCcchhhcc--cCeEEEEeccCcCC
Confidence 4555554 245566666553 2222222222 24566655555554 3322 345554 36799999864222
Q ss_pred eeeeee-cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 88 RVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
...... ......+....+++++.|..... +++.+++-|-+..||+++.. ..+.++.--+.|...|.
T Consensus 134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp-------~~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDP-------NLIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVY 200 (364)
T ss_pred ceehhhhhccCcccccCCcccccccccCCc-------ceeEeecccCeEEEEEEeec------cccceeeEEEecCccee
Confidence 111111 11112233445777777766544 58999999999999999865 23577888888999999
Q ss_pred EEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-CcEEEEEC
Q 014114 167 FSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDT 244 (430)
Q Consensus 167 ~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~~wd~ 244 (430)
.++|... -+.+++.+.||.|++||++..+.-..+...... ......++|. ..+.+++|+-..| ..|.+.|+
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~------~~pLlRLswn-kqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP------STPLLRLSWN-KQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC------CCcceeeccC-cCCchHHhhhhcCCceEEEEEe
Confidence 9999974 468899999999999999876544333222211 1456777885 4566777776554 57999999
Q ss_pred CCCCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCe------EEeEEeccccCcEEEEEEcCC-CCEE
Q 014114 245 SAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK------LLGCFIGKCSGSIRSIARHPT-LPII 316 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~v~~i~~s~~-~~~l 316 (430)
+.+..++..++.|.+.|..|+|.|.. ..|++++.|..+.|||+.+.- ++..+.. .+.|+.+.|++. +.++
T Consensus 274 R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEE
Confidence 99999999999999999999999965 689999999999999997532 2323333 678999999974 4566
Q ss_pred EEEeCCCeEEE
Q 014114 317 ASCGLDSYLRF 327 (430)
Q Consensus 317 ~s~~~d~~v~i 327 (430)
+.+. ++.+.|
T Consensus 352 ai~~-~kklei 361 (364)
T KOG0290|consen 352 AICF-GKKLEI 361 (364)
T ss_pred EEEe-cCeeeE
Confidence 6664 333433
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.8e-15 Score=127.66 Aligned_cols=195 Identities=12% Similarity=0.169 Sum_probs=150.1
Q ss_pred ceEEEEEcCCCCEEEEecCC--CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 164 TIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
.|..+-|+. .+++..+.+ ..+++++++.+..+-.+.-+ ..|.++.+ +.+.|+++-.+ .|+|
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp----------t~IL~Vrm----Nr~RLvV~Lee-~IyI 110 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP----------TSILAVRM----NRKRLVVCLEE-SIYI 110 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecC----------CceEEEEE----ccceEEEEEcc-cEEE
Confidence 455566654 444444433 45888888877666554432 56889998 55667776555 4999
Q ss_pred EECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEc--CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 242 YDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 242 wd~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
||+++.+ ++.++.. +...+.++++++.+.+++.-+ ..|.|.+||+.+-+.+..+..| .+++-+++|+++|.+|
T Consensus 111 ydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~ll 188 (391)
T KOG2110|consen 111 YDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTLL 188 (391)
T ss_pred Eecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCEE
Confidence 9999866 3555443 445577777777777887643 4588999999999999999998 9999999999999999
Q ss_pred EEEeCCCe-EEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 317 ASCGLDSY-LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 317 ~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
||+++.|+ ||||.+.+|+.+..+ -+|-....|.+++|+|++++ .+.++.++|+||.+....
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eF-RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEF-RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeee-eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999986 899999999999996 34444445899999999999 788888999999987654
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.7e-15 Score=139.86 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=213.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCC-ceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+.+-+..+..|+||...++ ..+..+.+|..++.-+.+.. ++.. .++.+.+.||.|++||...+.++..+..
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg-----~~i~~l~~~~a~l~s~~~~~--~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATG-----ECITSLEDHTAPLTSVIVLP--SSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred CcEEEEeeCCEEEEEecchH-----hhhhhcccccCccceeeecC--CCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 44555556678999999987 77788888988876666666 4433 6788999999999999999999988876
Q ss_pred cCCCCCCCCCCceEEEEeeccCcccc-----ccCCc-eEEEEccCCeeEEE--EeeeecccccCCcceeeEEeeccCCce
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREES-----SSRSR-TLLTCTTKGKASMR--SIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~-~~~~~~~~g~i~v~--~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
.. ++..+.+.......+ +..+. .+.+.+.+-...+. .+..... ...-+...+ ..-
T Consensus 101 ~~---------~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~-------~~~d~~~~~-~~~ 163 (792)
T KOG1963|consen 101 NL---------PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS-------AKGDFLKEH-QEP 163 (792)
T ss_pred CC---------ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc-------cchhhhhhh-cCC
Confidence 32 222122111100000 00000 11111111001111 1100000 000001011 113
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
.++.+++.+++.+..... .+.+|+..+... ....+. ....|.-.+++.++ +|++++++++..||.|.+|.--
T Consensus 164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~--~~~~~~---~~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~ 235 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTK--HTSSRD---ITVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDF 235 (792)
T ss_pred ccEEEcCCceEEEEEEee-eEEEEEecccce--eeccch---hhhhhcccceeEEe--ccccceEEEeccCCcEEEEecc
Confidence 567788888777766555 688888876541 111111 11222234788888 8999999999999999999643
Q ss_pred C---CCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC
Q 014114 246 A---QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 246 ~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
. .......+..|...|.+++|+++|.+|++|+..+.+.+|.+.+++ ++|...-.++|..+.++||+.+.+....|
T Consensus 236 ~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 236 GSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred ccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 3 122356788899999999999999999999999999999999988 33333337899999999999999999999
Q ss_pred CeEEEEeCCCCceeeEEe---e-----ccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 323 SYLRFWDIKTRQLLSAVF---L-----KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 323 ~~v~iwd~~~~~~~~~~~---~-----~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
+.|.+-...+......+. . +....+..+.++++|--.. +..+..+.|.+||....
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 999999876654433321 0 1112445688899994444 88899999999998763
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.4e-16 Score=132.77 Aligned_cols=299 Identities=14% Similarity=0.100 Sum_probs=205.3
Q ss_pred cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCC--CCCCCCceEEEEeeccCccccccC
Q 014114 45 WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG--AQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
+.+|.+.+..+.|+. ++++|++|+.|-.+++|++...-.... ..|.. ..+|...|.|+.+-....
T Consensus 52 ~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~---~KPI~~~~~~H~SNIF~L~F~~~N~------ 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKT---PKPIGVMEHPHRSNIFSLEFDLENR------ 118 (609)
T ss_pred hhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcC---CCCceeccCccccceEEEEEccCCe------
Confidence 345777765555544 578999999999999999853211111 01111 124556888999876555
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeee
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTA 200 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~ 200 (430)
.+++|..++++...+++... +|.++.-. ..+.|..+..+|-.+.|++.+.++.|.+||.+... .+..+
T Consensus 119 --~~~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 119 --FLYSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred --eEecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence 89999999999999998654 55555432 24589999999999999999999999999997644 11111
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec------CCCeEEEEeeCCCCEEE
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~ 274 (430)
-.. ..+.....+.|+ +-...+|++.+..+-+.+||.+.+..++...... ...-.++.|+|+|+.|+
T Consensus 189 ~~A-------N~~~~F~t~~F~-P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 189 LPA-------NSGKNFYTAEFH-PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred eec-------CCCccceeeeec-CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 111 012446777884 2345678888999999999999876655433221 22336788999999888
Q ss_pred EEcCCCCEEEEEccCCeEE-eEEecc-----ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----c--eee-----
Q 014114 275 IGNGSGDLASVDIRTGKLL-GCFIGK-----CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR----Q--LLS----- 337 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~~~~~-~~~~~~-----~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~----~--~~~----- 337 (430)
+--....-.+||+.+.++. ..+... ....+.+++|..|- -+++|+.+-.|++|.+.-. - .+.
T Consensus 261 siRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~ 339 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE 339 (609)
T ss_pred hhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhh
Confidence 7766666678898775543 333211 02356778886654 4899999999999987421 0 010
Q ss_pred ----------EEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 338 ----------AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ----------~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
-..+++| .+++..+.|+|...+ ++.+-...+++|....
T Consensus 340 ~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 340 MPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred CchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccccc
Confidence 0126778 667799999999888 8888899999998654
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.3e-17 Score=143.59 Aligned_cols=303 Identities=14% Similarity=0.117 Sum_probs=215.6
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..+..|.+.+.. +.| ...|..|++|+.|..|.+||+..++....+.. +|...+...+|++.. +
T Consensus 136 ~kL~~H~GcVnt--V~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s------~ 198 (559)
T KOG1334|consen 136 KKLNKHKGCVNT--VHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFS------G 198 (559)
T ss_pred hcccCCCCccce--eee--cccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCC------C
Confidence 445667777554 444 55688999999999999999998887776654 444556556666544 3
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeec
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
...+++++.||.+++-.+.... ...++.++. .|.+.|.-++.-|+. ..|++++.|+.+.-+|++++.....+.
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~----~~e~t~rl~--~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETG----YVENTKRLA--PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred CcCceeccccCceeeeeecccc----ceecceecc--cccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence 4589999999999987764322 122333333 467899999998854 568899999999999998866544433
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCc-----ceEEeeec------CCCeEEEEeeCC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRR-----PVMSFDFR------ETPIKAVAEEPD 269 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~------~~~i~~~~~s~~ 269 (430)
........ ......++. .|. .+.+++++.|..+++||.+.-.. ++..+..| .-.|++++|+.+
T Consensus 273 cr~~~~~~---~v~L~~Ia~--~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 273 CREADEKE---RVGLYTIAV--DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred eeccCCcc---ceeeeeEec--CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 22111100 023566676 444 45899999999999999875322 12223222 347999999988
Q ss_pred CCEEEEEcCCCCEEEEEccC--C----------eEEe-EEeccc-cCcEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCc
Q 014114 270 SFNIYIGNGSGDLASVDIRT--G----------KLLG-CFIGKC-SGSIRSIAR-HPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 270 ~~~l~~~~~dg~v~iwd~~~--~----------~~~~-~~~~~~-~~~v~~i~~-s~~~~~l~s~~~d~~v~iwd~~~~~ 334 (430)
+.-|+++..|-.|++|.-.. | ..+. .+++|. ...|..+-| -|...|+++|+.-|.|.||+-.+++
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 87788888888899995432 2 1222 367772 234777755 4778899999999999999999999
Q ss_pred eeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 335 LLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.+.. +.+. ..+|.|+.=+|--.+ ++.+-|-.|+||....
T Consensus 428 ii~~--MegD-r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 428 IIRF--MEGD-RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHHH--hhcc-cceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 8887 4444 337899999999999 9999999999998744
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=8.2e-18 Score=155.15 Aligned_cols=283 Identities=15% Similarity=0.206 Sum_probs=205.3
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
+..+.+|-..|+|.++.- .|.|+++|+.|..++||..+++.++..+.+|. ..+..++...+..
T Consensus 183 ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--------~ditdlavs~~n~----- 245 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRGHS--------GDITDLAVSSNNT----- 245 (1113)
T ss_pred HHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCCCc--------cccchhccchhhh-----
Confidence 445667888877666644 57799999999999999999999999999876 5677676655444
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
.+++++.|..|+||.+.... .+.+.. .|.+.|++++|+|-. +.+.||++++||.+-.-.++.-.
T Consensus 246 ---~iaaaS~D~vIrvWrl~~~~--------pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 246 ---MIAAASNDKVIRVWRLPDGA--------PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred ---hhhhcccCceEEEEecCCCc--------hHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCC
Confidence 88899999999999987544 333333 578999999999954 67899999999987222221111
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSG 280 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg 280 (430)
.. .......+.++.| ...+..+++++.|+.-..|.+.... .+...+.-+.++.+- .+.+++-.+-
T Consensus 310 p~-----~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 310 PL-----KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred CC-----Ccccccceeeeec--cccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeee
Confidence 11 0111134566666 5677889999999988877664311 111111112222121 4566666778
Q ss_pred CEEEEEccCCeEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
.+++|++.+|...+.+.+| ...+..+.++|-. +...+++.||...|||+-.|.++... ..+| .. +...+||+||.
T Consensus 376 ~~~vwnl~~g~l~H~l~gh-sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y-~~gh-~k-l~d~kFSqdgt 451 (1113)
T KOG0644|consen 376 RLCVWNLYTGQLLHNLMGH-SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY-FIGH-GK-LVDGKFSQDGT 451 (1113)
T ss_pred Eeeeeecccchhhhhhccc-ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee-eccc-ce-eeccccCCCCc
Confidence 8999999999999999998 9999999999955 45678899999999999999988875 3555 33 57889999999
Q ss_pred e-eeecCCCcEEEecCC
Q 014114 360 A-NAAADAPMLEIQNGN 375 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~~~ 375 (430)
. +...+.|.+.|....
T Consensus 452 s~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILGTG 468 (1113)
T ss_pred eEecCCCCCceEEeccC
Confidence 9 666667888887643
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1.9e-17 Score=148.42 Aligned_cols=237 Identities=12% Similarity=0.067 Sum_probs=168.4
Q ss_pred EccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC
Q 014114 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 129 ~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 207 (430)
.+..|.|.||++...... .|+.+-- +..+..|+.+.|+| +.+.|++++.||.|++|.+..+..-.....+. .
T Consensus 599 ~g~gG~iai~el~~PGrL---PDgv~p~--l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe--~ 671 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRL---PDGVMPG--LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE--K 671 (1012)
T ss_pred cCCCceEEEEEcCCCCCC---Ccccccc--cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc--e
Confidence 355788888888754322 2222221 22356799999999 78899999999999999987643221111111 0
Q ss_pred CCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEc
Q 014114 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~ 287 (430)
.-..|...|+++.|+ .-..+.|++++.|-+|++||+++.. ....+.+|.+.|..++|||+|+.+++.+.||+|++|+.
T Consensus 672 ~lt~h~eKI~slRfH-PLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFH-PLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred eeecccceEEEEEec-chhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 111133679999995 2346789999999999999999866 47789999999999999999999999999999999999
Q ss_pred cCCe-EEeEEeccccCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCCCC--ceeeEEeeccccceeEEEeeecCCcce
Q 014114 288 RTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRFWDIKTR--QLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 288 ~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~----~v~iwd~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
++++ .++.-.+.....--.|.|.-+|+++++.+.|. +|.+||..+- .++.+..+..... +.--.+.+|...
T Consensus 750 rs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps--~LvP~YD~Ds~~ 827 (1012)
T KOG1445|consen 750 RSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS--PLVPHYDYDSNV 827 (1012)
T ss_pred CCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc--cccccccCCCce
Confidence 8764 45444443233445678888999998887664 6889987653 3444433332212 233456666665
Q ss_pred --eeecCCCcEEEecCCC
Q 014114 361 --NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 --~~~~~d~~v~vw~~~~ 376 (430)
++|-.|..|.+|+...
T Consensus 828 lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 828 LFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred EEEecCCCceEEEEEecC
Confidence 8899999999998764
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=139.70 Aligned_cols=208 Identities=16% Similarity=0.139 Sum_probs=159.2
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
+.++..+.||.+.|.+- .++....+..|. ..+.+-.|.+.. .-|+++++||.+++|+-.
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~--------~A~~~gRW~~dG--------tgLlt~GEDG~iKiWSrs---- 134 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHA--------AAISSGRWSPDG--------AGLLTAGEDGVIKIWSRS---- 134 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhh--------hhhhhcccCCCC--------ceeeeecCCceEEEEecc----
Confidence 46888999999999974 677777776654 566666665544 489999999999999854
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+.++.--......|.|++|.|+.+.++.+.. +.+.+=.+.-...+...+.|. +-|.++.| ++
T Consensus 135 ------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W--~~ 196 (737)
T KOG1524|consen 135 ------GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHD---------GLVLSLSW--ST 196 (737)
T ss_pred ------chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccC---------cEEEEeec--Cc
Confidence 2333333445678999999998776665443 367777776666666666665 66999999 88
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
..+++++|++|-..++||... . ++..-..|+.+|++++|+|+ ..++.++.. +++ +.....+.|.
T Consensus 197 ~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSif 260 (737)
T KOG1524|consen 197 QSNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIF 260 (737)
T ss_pred cccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCCccceE
Confidence 999999999999999999874 3 47777889999999999999 566666432 333 3333378899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEE
Q 014114 306 SIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
.++||+||..++.|+..|.+.+=
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred EEEEcCCCceeeccccCceEEEe
Confidence 99999999999999999876653
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.2e-16 Score=137.73 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=157.6
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
.+.+.+|.+.|.++.+ +.+|.+|++|+.|-.+.|||....+++..+.. +|...|.+++|.+...
T Consensus 43 E~eL~GH~GCVN~LeW----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tn----- 106 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEW----NADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTN----- 106 (758)
T ss_pred hhhhccccceecceee----cCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCC-----
Confidence 3567789998776666 45788999999999999999998888888765 4557899999988665
Q ss_pred CCceEEEEccCCeeEEEEeeeecccc--cCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCceee
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSA--ESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~--~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~ 198 (430)
+..+++|..|..|+++++....... -....+++.|. +|...|..++..|++ +.+.+++.||+|+.+|++....-.
T Consensus 107 -nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 107 -NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred -CeEEEeccCcceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 3489999999999999997543321 11224566777 567788999999987 788899999999999997632110
Q ss_pred eec-CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC-----------c------ceEEee-ecC-
Q 014114 199 TAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------R------PVMSFD-FRE- 258 (430)
Q Consensus 199 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-----------~------~~~~~~-~~~- 258 (430)
.-. .+..-..-....-...++... ..+..+|++|+.|-..++||.+... + ++..+. +|-
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltis-p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTIS-PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeec-CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 000 000000000001235677774 3356789999999999999954211 0 122221 121
Q ss_pred ----------CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 259 ----------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 259 ----------~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
..++-+.|+|+|..|++.-..-.|+++|+..+
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 12566789999988877766667999998643
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.1e-17 Score=137.64 Aligned_cols=190 Identities=18% Similarity=0.147 Sum_probs=141.3
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
..+++++.||.++||+..... ..+....|...|.++.|+|++++|++-+.| ..++|+..++..+......
T Consensus 157 s~latgg~dg~lRv~~~Ps~~---------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 157 SKLATGGTDGTLRVWEWPSML---------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred CEeeeccccceEEEEecCcch---------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 378888888888888743221 112334678899999999999999999999 8999999999776655432
Q ss_pred CCCCCCcccCcceeEeEEeeCCCC-----CEEEEEeCCCcEEEEECCCCCc----ceEEeeecCCCeEEEEeeCCCCEEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDH-----RKFVAGTNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~-----~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~ 274 (430)
... ..+..+.| +.++ ..++....-+.|+.||+..... ...........|++++.+++|++++
T Consensus 227 ~k~-------~~~~~cRF--~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 227 SKD-------EMFSSCRF--SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred ccc-------hhhhhcee--cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 211 23556677 4444 2233334456777777654222 1122222335899999999999999
Q ss_pred EEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.|+.||.|-|++..+.+.++..+..|...|+.+.|+|+.+++++.+.|....|..+.-
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999988888766699999999999999999999999999887754
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.2e-16 Score=136.90 Aligned_cols=195 Identities=15% Similarity=0.083 Sum_probs=149.6
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
.+++|+.++..|++|+.||++|+|++.+...+.....|. ..|.++.| +||+++|++.+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~---------~eV~DL~F--S~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH---------AEVKDLDF--SPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc---------Ccccccee--CCCCcEEEEecCC-ceEEEEec
Confidence 789999999999999999999999988877776666554 66999999 9999999999999 99999999
Q ss_pred CCCcceEEee--ecCCCeEEEEeeCCC---CE--EEEEcCCCCEEEEEccCCeE-----EeEEeccccCcEEEEEEcCCC
Q 014114 246 AQRRPVMSFD--FRETPIKAVAEEPDS---FN--IYIGNGSGDLASVDIRTGKL-----LGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 246 ~~~~~~~~~~--~~~~~i~~~~~s~~~---~~--l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~v~~i~~s~~~ 313 (430)
++.. +.... .....+..+.|+.++ .+ ++.-..-+.|+.|++....- ..+.... ...|++++.+++|
T Consensus 216 ~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dG 293 (398)
T KOG0771|consen 216 TGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDG 293 (398)
T ss_pred cCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCC
Confidence 9743 43333 223456667787766 22 23333446677777653322 1111121 3589999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 314 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
++++.|+.||.|-|++..+.+.++.+ -+.| ...|+.+.|+||.++ ++.+.+...+|.....
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~~v-k~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQYV-KEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeEee-hhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999998888764 4456 456899999999999 8888888888766543
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=2e-15 Score=145.14 Aligned_cols=271 Identities=14% Similarity=0.149 Sum_probs=180.6
Q ss_pred EEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEE
Q 014114 29 IEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG 108 (430)
Q Consensus 29 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 108 (430)
|+..+ .++..+.+|...+.-++.+. +++.++++|+.||+|++||...- .++. ....
T Consensus 1034 W~p~G------~lVAhL~Ehs~~v~k~a~s~---~~~s~FvsgS~DGtVKvW~~~k~------~~~~--------~s~r- 1089 (1431)
T KOG1240|consen 1034 WNPRG------ILVAHLHEHSSAVIKLAVSS---EHTSLFVSGSDDGTVKVWNLRKL------EGEG--------GSAR- 1089 (1431)
T ss_pred CCccc------eEeehhhhccccccceeecC---CCCceEEEecCCceEEEeeehhh------hcCc--------ceee-
Confidence 77777 67788888887766555543 45578999999999999987321 1100 0000
Q ss_pred EEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEE
Q 014114 109 LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (430)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 188 (430)
....|.. .+..+.++.+.+.++.+|+++.||.|++
T Consensus 1090 --------------------------------------------S~ltys~-~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1090 --------------------------------------------SELTYSP-EGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred --------------------------------------------eeEEEec-cCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 1112221 3467778888889999999999999999
Q ss_pred EECCCC--ce-----eeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceEE--eeecC
Q 014114 189 WDLDKC--EK-----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMS--FDFRE 258 (430)
Q Consensus 189 wd~~~~--~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~ 258 (430)
.++... .. ......+.. ...+..-+|. ...+. .++.+...+.|..||++.... ... .....
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~-------g~vv~m~a~~-~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKD-------GVVVSMHAFT-AIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRH 1195 (1431)
T ss_pred EEccccccccceeeeeecccccCC-------CceEEeeccc-ccccceeEEEEEeccceEEecchhhhh-HHhhhcCccc
Confidence 998762 11 111111111 1223333443 23344 788889999999999997443 322 23345
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC---EEEEEe--CCCeEEEEeCCCC
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP---IIASCG--LDSYLRFWDIKTR 333 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~---~l~s~~--~d~~v~iwd~~~~ 333 (430)
+.|++++.+|.+.++++|+..|.+.+||++-+.++..+...+..+|+.+..+|-.+ ..++++ ..+.|-+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 79999999999999999999999999999988888877655468899988887443 444444 5678999999998
Q ss_pred ceeeEEeec-----------------cccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 334 QLLSAVFLK-----------------QHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 334 ~~~~~~~~~-----------------~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
.+...+... .+.-..+.+.--.+.+-.++++.|..|+.||....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 776664322 00111122222233333399999999999998753
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=3.8e-15 Score=143.29 Aligned_cols=285 Identities=15% Similarity=0.154 Sum_probs=184.2
Q ss_pred cceEeecCCCcEEEEEecCcc--CCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC--ceeee
Q 014114 15 LRALTFDSLGLIKVIEARGED--GGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~~~~ 90 (430)
.-++||+.||+||+|+...-. .+..+...+|......+.++.+++ .++.+|+|+.||.|++.++... +....
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEcccccccccee
Confidence 348999999999999997522 234444556654556666777776 4568999999999999998652 22211
Q ss_pred eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec---cCCceEE
Q 014114 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---ASGTIAF 167 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~ 167 (430)
.....+. .-..+.++.+.-+.... .+..++.+...+.+..||+..... .|... ..+.|++
T Consensus 1138 ~~~ri~n--~~~~g~vv~m~a~~~~~-----~S~~lvy~T~~~~iv~~D~r~~~~----------~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1138 TQVRIPN--LKKDGVVVSMHAFTAIV-----QSHVLVYATDLSRIVSWDTRMRHD----------AWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eeeeccc--ccCCCceEEeecccccc-----cceeEEEEEeccceEEecchhhhh----------HHhhhcCccccceeE
Confidence 1111111 11223455555554433 234788888999999999875443 23332 2478999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee-CCCCCEEEEEe--CCCcEEEEEC
Q 014114 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT--NDHQVRLYDT 244 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~--~dg~i~~wd~ 244 (430)
++.+|.++++++|+..|.+.+||++=+..+.....+.. .+++.+..++ .|.....++++ ..+.|.+|++
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~--------~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR--------APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccCccc--------CCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 99999999999999999999999998877776654431 3455444432 23334555544 4778999999
Q ss_pred CCCCcceEEeeec-C------------------CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE------------
Q 014114 245 SAQRRPVMSFDFR-E------------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL------------ 293 (430)
Q Consensus 245 ~~~~~~~~~~~~~-~------------------~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~------------ 293 (430)
.++.+ ...+-.. . -......+..-+..+++|+.|..|+.||.......
T Consensus 1273 ~~g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1273 ETGLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred ccCcc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 98754 3333221 1 01112223333458899999999999997542111
Q ss_pred -----------------eE-------------------Ee-------ccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 014114 294 -----------------GC-------------------FI-------GKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD 329 (430)
Q Consensus 294 -----------------~~-------------------~~-------~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd 329 (430)
.. +. ..|..+|+++++.... .+|++++.||.|.||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 00 0045678888776544 5889999999999993
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=9e-14 Score=125.63 Aligned_cols=282 Identities=18% Similarity=0.172 Sum_probs=176.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
+-+++-..+|.|.|.|..+. +.+..+...... .....+ +|||+++++++.||.|.++|+.+++.+..++.
T Consensus 7 l~~V~~~~~~~v~viD~~t~-----~~~~~i~~~~~~--h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~- 76 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATN-----KVVARIPTGGAP--HAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKV- 76 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT------SEEEEEE-STTE--EEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred EEEEEecCCCEEEEEECCCC-----eEEEEEcCCCCc--eeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEec-
Confidence 33456677899999999875 666666543332 233345 78899999999999999999988876555432
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+....+++++++|
T Consensus 77 -------------------------------------------------------------------G~~~~~i~~s~DG 89 (369)
T PF02239_consen 77 -------------------------------------------------------------------GGNPRGIAVSPDG 89 (369)
T ss_dssp -------------------------------------------------------------------SSEEEEEEE--TT
T ss_pred -------------------------------------------------------------------CCCcceEEEcCCC
Confidence 2234567889999
Q ss_pred CEEEEec-CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcceE
Q 014114 175 KFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~ 252 (430)
++++++. ..+.+.++|.++.+.+..+......... ....+.++.. +|....++..- ..+.|-+.|....+.+..
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~--s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVA--SPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE---SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEe--cCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9998775 5889999999999998887653211100 1245666666 66777555554 458888889877544333
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCeEEeEEec-------------c-------------------
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIG-------------K------------------- 299 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~-------------~------------------- 299 (430)
.............|+|++++++++ ..++.|-++|..+++.+..+.. |
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 333334567889999999987765 4567788888887665443320 0
Q ss_pred ---------------------ccCcEEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCceeeEEeeccccceeEEEeee
Q 014114 300 ---------------------CSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 300 ---------------------~~~~v~~i~~s~~~~~l~s~----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 354 (430)
..+.-.-+..+|+++++.+. ...++|.++|.++.+.+..+ .......+..+.|
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i--~~~~~~~~~h~ef 323 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI--TPGPGKRVVHMEF 323 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H--HHHHT--EEEEEE
T ss_pred ccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE--eccCCCcEeccEE
Confidence 01122566778999999888 45589999999999877763 3222323689999
Q ss_pred cCCcce--eeecCCC-cEEEecCCCCCC
Q 014114 355 ADKEVA--NAAADAP-MLEIQNGNDTQE 379 (430)
Q Consensus 355 s~~g~~--~~~~~d~-~v~vw~~~~~~~ 379 (430)
++||.. ++.-..+ .|.|||..+.++
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 999998 5554444 899999987554
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=8.6e-16 Score=135.44 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=133.7
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC----
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---- 247 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---- 247 (430)
+.+--+++|-..|.|++.|....+....+.... ......++++.|.+ -+...|+++-.+|.+++||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r-----~i~ktsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~~t 256 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER-----LINKSSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCGAT 256 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcc-----cccccceEEEEEEe-CCCceEEEEEecCceEEeeccccccCC
Confidence 456677888889999999886632222121111 11126799999974 45556777788999999976421
Q ss_pred -----------------------CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcE
Q 014114 248 -----------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 248 -----------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v 304 (430)
..|+..+......|..++|+|||++||+.+.||.++|||..+.+++..++.. -+..
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGL 335 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGL 335 (636)
T ss_pred CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccce
Confidence 0133333334568899999999999999999999999999998888777766 6789
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeec
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s 355 (430)
.|++|||||++|++|++|--|.||.+..++.+.. -.+| .+.|..++|.
T Consensus 336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGH-kSWVs~VaFD 383 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGH-KSWVSVVAFD 383 (636)
T ss_pred EEEEEcCCccEEEecCCcceEEEEEeccceEEEe--cccc-ccceeeEeec
Confidence 9999999999999999999999999999999887 6677 6667888887
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.1e-15 Score=139.64 Aligned_cols=235 Identities=12% Similarity=0.019 Sum_probs=152.1
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccC---CeEEEeccCCCceeeeeeecCCCCC
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGA 99 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 99 (430)
+..|.+||.++. ....+..+... +....| +|||++|+..+.+ ..|.+||+.+++....
T Consensus 183 ~~~i~i~d~dg~------~~~~lt~~~~~--v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l--------- 243 (429)
T PRK01742 183 PYEVRVADYDGF------NQFIVNRSSQP--LMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVV--------- 243 (429)
T ss_pred eEEEEEECCCCC------CceEeccCCCc--cccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEE---------
Confidence 468999998873 23445555544 455555 8899999887643 3688898865532110
Q ss_pred CCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEE
Q 014114 100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179 (430)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~ 179 (430)
..+ .+....++|+|+++.|+.
T Consensus 244 ----------~~~-------------------------------------------------~g~~~~~~wSPDG~~La~ 264 (429)
T PRK01742 244 ----------ASF-------------------------------------------------RGHNGAPAFSPDGSRLAF 264 (429)
T ss_pred ----------ecC-------------------------------------------------CCccCceeECCCCCEEEE
Confidence 000 011124688999988876
Q ss_pred ec-CCCeE--EEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcceEEee
Q 014114 180 GG-KGVEV--NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 180 ~~-~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~ 255 (430)
+. .+|.+ ++||+.++... .+..+. ..+....| +|+++.|+.++ .++...||++.........+
T Consensus 265 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~---------~~~~~~~w--SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGGTPS-QLTSGA---------GNNTEPSW--SPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred EEecCCcEEEEEEECCCCCeE-eeccCC---------CCcCCEEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 54 57754 45566665543 333222 33667888 89999877655 57888888775432223333
Q ss_pred ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCC
Q 014114 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI--KTR 333 (430)
Q Consensus 256 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~--~~~ 333 (430)
.+.. ..+.|+|+|++|+..+.++ +.+||+.+++........ ...++.|+|+|++|+.++.++.+.+|++ .+|
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3333 4678999999998887755 667999888754322222 2356789999999999999998888875 357
Q ss_pred ceeeEEeeccccceeEEEeeecCC
Q 014114 334 QLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
+.+.. +.++. ..+..++|+|-
T Consensus 406 ~~~~~--l~~~~-g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKAR--LPGSD-GQVKFPAWSPY 426 (429)
T ss_pred CceEE--ccCCC-CCCCCcccCCC
Confidence 77776 44553 34578899884
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.4e-13 Score=114.03 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=120.0
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCCCc
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQ 238 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~ 238 (430)
...+|.++.+.+ ..|++.- .+.|++|... +.+.++.+..... |..+.+++- ..+..+||. |-.-|.
T Consensus 93 f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~N-------PkGlC~~~~--~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 93 FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-------PKGLCSLCP--TSNKSLLAFPGFKTGQ 160 (346)
T ss_pred eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccC-------CCceEeecC--CCCceEEEcCCCccce
Confidence 356788888865 4455443 4589999987 5566666554321 122322222 333344444 335689
Q ss_pred EEEEECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC-EEEEEccCCeEEeEEec-cccCcEEEEEEcCCCCE
Q 014114 239 VRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPI 315 (430)
Q Consensus 239 i~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~ 315 (430)
|+|-|+...+. +...+.+|.+.|.|++++-+|..+|++|..|+ |||||..+|+.+.+++- .....|.+|+|||++.+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999987443 35788999999999999999999999999998 89999999999999873 33568999999999999
Q ss_pred EEEEeCCCeEEEEeCCC
Q 014114 316 IASCGLDSYLRFWDIKT 332 (430)
Q Consensus 316 l~s~~~d~~v~iwd~~~ 332 (430)
|+++|.-|+|.||.++.
T Consensus 241 LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCeEEEEEeec
Confidence 99999999999998865
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=1.9e-15 Score=125.02 Aligned_cols=202 Identities=11% Similarity=0.133 Sum_probs=160.5
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCc
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 238 (430)
..+|+|.+|+++...++++.....|.||.....+ ..+++..|. ..|+.+.| .|..+.|++++.|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---------~~vtgvdW--ap~snrIvtcs~drn 78 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---------KIVTGVDW--APKSNRIVTCSHDRN 78 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---------cceeEEee--cCCCCceeEccCCCC
Confidence 4789999999999999999999999999886654 456666654 66999999 899999999999999
Q ss_pred EEEEECCCCC--cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE---eEEeccccCcEEEEEEcCCC
Q 014114 239 VRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL---GCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 239 i~~wd~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~v~~i~~s~~~ 313 (430)
-++|....+. ++...+..++...++|.|+|.++.|++|+....|.||-++...-- +.++..+.+.|+++.|+|++
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9999985432 356667778899999999999999999999999999887643321 12222237889999999999
Q ss_pred CEEEEEeCCCeEEEEeCC-----C-------------CceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 314 PIIASCGLDSYLRFWDIK-----T-------------RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 314 ~~l~s~~~d~~v~iwd~~-----~-------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
-+|++|+.|+..|||... + |+++.. +. ...+.+..+.|+|+|.. +..+.|..+.+-|.
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--AS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hc-cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 999999999999999642 1 112222 11 33556899999999999 89999999998876
Q ss_pred CCC
Q 014114 375 NDT 377 (430)
Q Consensus 375 ~~~ 377 (430)
...
T Consensus 236 ~~p 238 (361)
T KOG1523|consen 236 AGP 238 (361)
T ss_pred CCC
Confidence 553
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=132.19 Aligned_cols=184 Identities=15% Similarity=0.197 Sum_probs=140.0
Q ss_pred CCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEe
Q 014114 61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 61 ~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~ 140 (430)
..|.+--|+.|-.-|.|.+.|....+....+..-. .-....++|+.|..... ..++++-.+|.+.+|+.
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r----~i~ktsvT~ikWvpg~~-------~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER----LINKSSVTCIKWVPGSD-------SLFLVAHASGNLYLYDK 249 (636)
T ss_pred cCCCCcceEEeeccCceEEecchhhHHHHhhhhcc----cccccceEEEEEEeCCC-------ceEEEEEecCceEEeec
Confidence 35566678999999999999986633222222100 11225789999998654 58889999999999976
Q ss_pred eeeccc--------------------ccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 014114 141 EVTKVS--------------------AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 141 ~~~~~~--------------------~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 200 (430)
+..... ....+.++..|.+.. +.|..++|+|++++||+.+.||.++|||..+.+.+-.+
T Consensus 250 ~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m 328 (636)
T KOG2394|consen 250 EIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM 328 (636)
T ss_pred cccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH
Confidence 433211 111235666676653 48999999999999999999999999999987766555
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~ 268 (430)
+.-- +...|++| +||+++|++|++|..|.||.+.. ++.+..-++|.++|..|+|.|
T Consensus 329 kSYF---------GGLLCvcW--SPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 329 KSYF---------GGLLCVCW--SPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred Hhhc---------cceEEEEE--cCCccEEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence 4432 55899999 99999999999999999999987 446888899999999999987
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-14 Score=128.29 Aligned_cols=276 Identities=14% Similarity=0.142 Sum_probs=181.5
Q ss_pred EEEeccCCCCCCceEE-EEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC
Q 014114 54 VLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
+..+.. +|||+|++ +|..--.|++||+.+-. ..+..|.. ..++.+......- ..++.--.|
T Consensus 54 st~ik~--s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlD-------ae~V~feiLsDD~-------SK~v~L~~D 115 (703)
T KOG2321|consen 54 STRIKV--SPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLD-------AEVVDFEILSDDY-------SKSVFLQND 115 (703)
T ss_pred cceeEe--cCCCcEEEEecccCCceEEEEcccce--eeeeeccc-------ccceeEEEeccch-------hhheEeecC
Confidence 455555 88999875 57788899999985533 33433332 1233333322111 012222222
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
..|.+-..- + +.+.+.-...-..++++.-..-|++++....|+-++++.|.-+..+....
T Consensus 116 R~IefHak~----------G--~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-------- 175 (703)
T KOG2321|consen 116 RTIEFHAKY----------G--RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-------- 175 (703)
T ss_pred ceeeehhhc----------C--eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--------
Confidence 223222110 0 01111112233455665433334445555579999999999887776654
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee------cCC-----CeEEEEeeCCCCEEEEEcCCCC
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RET-----PIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------~~~-----~i~~~~~s~~~~~l~~~~~dg~ 281 (430)
..++++.. ++...+|++|+.+|.|..||.+.... +..+.. |.+ .|+++.|+.+|-.+++|..+|.
T Consensus 176 -~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 176 -GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred -ccceeeee--cCccceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 55888888 78888999999999999999998443 444432 222 4999999999999999999999
Q ss_pred EEEEEccCCeEEeEEeccccCcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
|.|||+++.+++..-.....-+|..+.|.+.+ ..+++. ....++|||-.+|+....+. .. .. +..+|+-|++-
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE--pt-~~-lND~C~~p~sG 326 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE--PT-SD-LNDFCFVPGSG 326 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc--cc-CC-cCceeeecCCc
Confidence 99999999888755443336789999998763 445544 45689999999999988753 12 22 68889999877
Q ss_pred e-eeecCCCcEEEecCCC
Q 014114 360 A-NAAADAPMLEIQNGND 376 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~~~~ 376 (430)
+ +++..++.+..|=.+.
T Consensus 327 m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEEecCCCcceeEEccc
Confidence 7 8888888877766554
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.3e-14 Score=119.04 Aligned_cols=287 Identities=12% Similarity=0.082 Sum_probs=180.1
Q ss_pred EeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCee
Q 014114 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 135 (430)
.++| ++.-..++++..|-.|++||-.. ++...++. .....++|++|-+... ..++.+.. +-|
T Consensus 103 ~~aW--hqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsa-------selavgCr-~gI 164 (445)
T KOG2139|consen 103 GVAW--HQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSA-------SELAVGCR-AGI 164 (445)
T ss_pred eEee--chhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCc-------ceeeeeec-cee
Confidence 3444 43334578899999999999755 55555554 2335789999977655 24444444 668
Q ss_pred EEEEeeeecccc----cCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCCCc
Q 014114 136 SMRSIEVTKVSA----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 136 ~v~~~~~~~~~~----~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 210 (430)
.+|......... ........+.......+|+++.|++++..+++++. |..|.|||..++..+......
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g------- 237 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG------- 237 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-------
Confidence 999876544321 11222333444334478999999999999998875 567999999998776544221
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
.+.+.-+.| +||+.+|..++-|+..++|....... ........+.|...+|+|+|++|+..+. |.-++|.+.-.
T Consensus 238 --lgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~ 311 (445)
T KOG2139|consen 238 --LGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFD 311 (445)
T ss_pred --CCceeeEEE--cCCCCEEEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeec
Confidence 256888999 99999999999999999997665332 2222233458999999999987766543 23345544211
Q ss_pred e---------------EEeEEe------c--cccCcEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCceeeEE
Q 014114 291 K---------------LLGCFI------G--KCSGSIRSIARHPTLPIIASCGLDS--------YLRFWDIKTRQLLSAV 339 (430)
Q Consensus 291 ~---------------~~~~~~------~--~~~~~v~~i~~s~~~~~l~s~~~d~--------~v~iwd~~~~~~~~~~ 339 (430)
. ++..+. + ...+++.+++|.|.|.+|++.-..+ .|.+||.+..-.+...
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels 391 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS 391 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE
Confidence 0 011111 0 0246789999999999999875433 4677887654444332
Q ss_pred eecccc-ceeEEEeeecC---Ccce-eeecCCCcEEEecC
Q 014114 340 FLKQHL-NEVVFDSAFAD---KEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 340 ~~~~~~-~~~i~~~~~s~---~g~~-~~~~~d~~v~vw~~ 374 (430)
+ -+.. +.....+.|+| +|.+ ..+=..|.+.-|..
T Consensus 392 ~-cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 392 Y-CGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred e-cccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 1 1111 11123445554 4555 33334566655544
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-14 Score=123.28 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=189.9
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEe
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~ 180 (430)
.|.+.|.++.+..+.. .|++|+.|-.+.+|+++..-.. -..++|.+-.-.|...|.|++|+....++++|
T Consensus 54 ~H~GCiNAlqFS~N~~--------~L~SGGDD~~~~~W~~de~~~~--k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDR--------FLASGGDDMHGRVWNVDELMVR--KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhccccceeeeccCCe--------EEeecCCcceeeeechHHHHhh--cCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 3446777888877544 8999999999999998643211 11246666666677899999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--cC
Q 014114 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RE 258 (430)
Q Consensus 181 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~ 258 (430)
+.+++|.+.|+++.+.+..+...... +.|..+.. +|..+.|++.+.++.|.+||.+....++..+-. ..
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~-------~~VY~m~~--~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNR-------GDVYHMDQ--HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcc-------cceeeccc--CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999999999999988877654321 45777777 788999999999999999999975544433322 23
Q ss_pred CCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeE-EeEE---ecc--ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 259 TPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCF---IGK--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 259 ~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~-~~~~---~~~--~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
....++.|+|.. .+|++.+..+-+-+||.+..+. +... .+. ......++.|+|.|..|++--....-.+||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 567888999865 6788888889999999986542 2221 111 02234788999999999888777777888987
Q ss_pred CCceeeEEeec----ccc-ceeEEEeeecCCcceeeecCCCcEEEecCCCCC
Q 014114 332 TRQLLSAVFLK----QHL-NEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 332 ~~~~~~~~~~~----~~~-~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
+..+.. +... +.. ...+.+++|..|-.+++|+++-.|++|..+...
T Consensus 275 S~R~~V-~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 275 SQRCFV-LKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred ccccee-EeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence 644322 2222 111 123678899888878999999999999988644
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=9.9e-15 Score=120.88 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=177.0
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (430)
.+|.|.+|..... .++.+...+.+.||....... -....... .|...|+.++|+|..+.|++++.|
T Consensus 11 ~pitchAwn~drt--------~iAv~~~~~evhiy~~~~~~~-----w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 11 EPITCHAWNSDRT--------QIAVSPNNHEVHIYSMLGADL-----WEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred CceeeeeecCCCc--------eEEeccCCceEEEEEecCCCC-----ceeceehh-hhCcceeEEeecCCCCceeEccCC
Confidence 4788888877555 899999999999998764331 12333333 467889999999999999999999
Q ss_pred CeEEEEECCCCc---eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc---ceEEeeec
Q 014114 184 VEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFR 257 (430)
Q Consensus 184 g~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~ 257 (430)
..-++|....+. ....+..++ ...+++.| +|.++.|++|+.-..|.+|-...... ..+.-..+
T Consensus 77 rnayVw~~~~~~~WkptlvLlRiN---------rAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVLLRIN---------RAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred CCccccccCCCCeeccceeEEEec---------cceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 999999984432 222222222 45899999 89999999999999999998775331 11223445
Q ss_pred CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC------------------CeEEeEEeccccCcEEEEEEcCCCCEEEEE
Q 014114 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------------------GKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 258 ~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
.+.|.++.|+|++-+|++|+.|+..++|...- |+++.++... .+.|..+.|+|+|..|+-.
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCCCCEeeEe
Confidence 68899999999999999999999999996531 2334445333 6899999999999999999
Q ss_pred eCCCeEEEEeCCCCc-eeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEec
Q 014114 320 GLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~ 373 (430)
+.|.++.+-|..... .+.. +... .-...++.|-.+...+.++.|..-.++.
T Consensus 225 ~Hds~v~~~da~~p~~~v~~--~~~~-~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQS--VATA-QLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred cCCCceEEeecCCCchhccc--hhhc-cCCceeeEeecCCceeecCCCCCceEEE
Confidence 999999999976654 3333 2222 1335788888888887777774444443
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=5.2e-15 Score=140.36 Aligned_cols=271 Identities=13% Similarity=0.147 Sum_probs=191.7
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
+||++|. .-.|.+||+..+..+..+....-..+--....+. + ....++++..-..+.+-.....
T Consensus 18 ~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l----------~~~~~v~~~~~~~v~~~~~~~~-- 81 (967)
T KOG0974|consen 18 DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---L----------LSGKIVTCAKSDEVYVKEASNQ-- 81 (967)
T ss_pred ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---e----------ccceEEEEEeecceeecchhhh--
Confidence 4677664 3569999998887766655422111000000111 0 2235555554444433322211
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.+..| ...|....+.-+...++.+..++.+.+||...+.....+....... ...++-+-.++
T Consensus 82 -------~~~~~----s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------l~~~~~~g~s~ 143 (967)
T KOG0974|consen 82 -------IIERF----SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------LYSSLIIGDSA 143 (967)
T ss_pred -------hhhhc----cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------EEeEEEEeccC
Confidence 11111 1233334445567788888899999999998887777666543211 11222222267
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEe-EEeccccCcE
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG-CFIGKCSGSI 304 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~v 304 (430)
+.-++++|+.-+.|.+|+......+. .+.+|.+.|.++.|+.||+++++.|+|..+++|++.+.+... ..-+| ...|
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRv 221 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARV 221 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-ccee
Confidence 77899999999999999998544434 688999999999999999999999999999999999988776 66677 9999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
+.+.|.|+ .+++++.|.+.++|+.. ++.+.. +.+|....++.++..++... +|++.|+.+++|+....
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~--y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVN-GTQLEV--YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecc-cceehh--hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999998 89999999999999754 555554 67788888999999999999 99999999999998764
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=8.8e-15 Score=136.59 Aligned_cols=191 Identities=10% Similarity=0.013 Sum_probs=132.5
Q ss_pred cCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d 236 (430)
+...+...+|+|+++.|+..+.+ ..|++||+.+++...... .. .....++| +|+++.|+.+. .+
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~---------g~~~~~~w--SPDG~~La~~~~~~ 269 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FR---------GHNGAPAF--SPDGSRLAFASSKD 269 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CC---------CccCceeE--CCCCCEEEEEEecC
Confidence 45678999999999999887643 469999998875432211 11 11335788 89999888765 67
Q ss_pred CcEEEE--ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCe-EEeEEeccccCcEEEEEEcCC
Q 014114 237 HQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 237 g~i~~w--d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~s~~ 312 (430)
|.+.|| |+.++. ...+..+...+..+.|+|||+.|+..+ .++...||++.... ....+ .+ .. ....|+|+
T Consensus 270 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpD 343 (429)
T PRK01742 270 GVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISAD 343 (429)
T ss_pred CcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCC
Confidence 765555 665543 455666777788999999999877655 56888888765322 22222 33 33 46789999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
|++|+.++.++ +.+||+.+++.... .... . ...+.|+|||++ ++++.++...+|...
T Consensus 344 G~~ia~~~~~~-i~~~Dl~~g~~~~l--t~~~-~--~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 344 GKTLVMINGDN-VVKQDLTSGSTEVL--SSTF-L--DESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCEEEEEcCCC-EEEEECCCCCeEEe--cCCC-C--CCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 99998887765 66699998876432 1121 1 256789999999 777888888877754
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=132.05 Aligned_cols=288 Identities=16% Similarity=0.196 Sum_probs=199.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheec-CCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERW-GDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++|+.|-.|.+||...+ +....| .+|...+ .-..|....+..-|++.+.||.+++=.+.....+...+.
T Consensus 155 d~l~SgSDD~~vv~WdW~~~-----~~~l~f~SGH~~Nv--fQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 155 DVLASGSDDLQVVVWDWVSG-----SPKLSFESGHCNNV--FQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred ceeeccCccceEEeehhhcc-----Ccccccccccccch--hhhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 46899999999999999875 444444 3455543 222232233445699999999999887754444332222
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC--CceEEEEEc
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVD 171 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~--~~i~~~~~~ 171 (430)
.. ++.+++..++.-+..+ ..|++++.|+.+.-.++....... .+..-..... -....++.+
T Consensus 228 l~-----~h~g~vhklav~p~sp-------~~f~S~geD~~v~~~Dlr~~~pa~-----~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 228 LA-----PHEGPVHKLAVEPDSP-------KPFLSCGEDAVVFHIDLRQDVPAE-----KFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred cc-----cccCccceeeecCCCC-------CcccccccccceeeeeeccCCccc-----eeeeeccCCccceeeeeEecC
Confidence 11 4446777777766555 479999999999988887654432 1111111111 245678888
Q ss_pred CC-CCEEEEecCCCeEEEEECCCCce------eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEEC
Q 014114 172 IS-EKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 172 ~~-~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~ 244 (430)
|. ..++++|+.|..+++||.+.-.. +..+-.+. +.-..+..|++++| +.++.-|+++..|-.|+++.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Y--sh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVY--SHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEe--cCCccceeeeecccceEEecc
Confidence 84 45899999999999999865221 22222211 11123467999999 767777777788999999954
Q ss_pred CCCC-----------cceE-EeeecCC--CeEEEEe-eCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEE
Q 014114 245 SAQR-----------RPVM-SFDFRET--PIKAVAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 245 ~~~~-----------~~~~-~~~~~~~--~i~~~~~-s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
..+. ..+. .+++|.. .|..+-| -|...++++|+.-|.|.||+-.+++.+..+.+. ..-|+||.=
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEp 444 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEP 444 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCC
Confidence 3211 1122 3677753 4666665 688899999999999999999999999999887 569999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC
Q 014114 310 HPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 310 s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+|--++||+++.|..|+||...+
T Consensus 445 HP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 445 HPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred CCCCchhhccCCccceeeecCCc
Confidence 99999999999999999998644
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4.3e-16 Score=134.93 Aligned_cols=220 Identities=18% Similarity=0.192 Sum_probs=176.4
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
..++.++..|.+..+|...... .+.+.-...|.++.|-.+.+++|++- ...+++||- .|..++.++.+
T Consensus 142 rhlllgGrKGHlAa~Dw~t~~L----------~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTKKL----------HFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred cEEEecCCccceeeeeccccee----------eeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhhc
Confidence 3899999999998888754331 12223346788888988888888654 457999985 56666666654
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
..|..+.| -|..-+|++++..|.++.-|+.+++. +..+....+.+..++-+|-...+-+|...|+|.
T Consensus 210 ----------~~v~rLeF--LPyHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 210 ----------IRVARLEF--LPYHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred ----------Cchhhhcc--cchhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 56888999 57888999999999999999999874 777777788999999999999999999999999
Q ss_pred EEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeee
Q 014114 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~ 363 (430)
+|.....+++..+..| .++|.+|++.++|++++|++.|..++|||+++...+.++..+ .....++||..|.++ .
T Consensus 277 lWSP~skePLvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp----~~a~~ls~SqkglLA-~ 350 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP----HPASNLSLSQKGLLA-L 350 (545)
T ss_pred ecCCCCcchHHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC----CCcccccccccccee-e
Confidence 9999999999999998 999999999999999999999999999999998877775331 224667888777663 3
Q ss_pred cCCCcEEEecC
Q 014114 364 ADAPMLEIQNG 374 (430)
Q Consensus 364 ~~d~~v~vw~~ 374 (430)
+....|.||..
T Consensus 351 ~~G~~v~iw~d 361 (545)
T KOG1272|consen 351 SYGDHVQIWKD 361 (545)
T ss_pred ecCCeeeeehh
Confidence 34446777764
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.1e-15 Score=130.97 Aligned_cols=209 Identities=15% Similarity=0.263 Sum_probs=158.7
Q ss_pred ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcE
Q 014114 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 239 (430)
.|.++|.|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+... |...|.++.|.|..+...+++|..|..|
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence 57899999999999999999999999999999887777776532 3366999999887788899999999999
Q ss_pred EEEECCC---------CCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeE----------EeEEecc
Q 014114 240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL----------LGCFIGK 299 (430)
Q Consensus 240 ~~wd~~~---------~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~----------~~~~~~~ 299 (430)
++||+.. .+.....+..|...|..|+..|++ +.+.++++||+|+-+|++.... +..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 233455667788899999999988 8999999999999999986321 1111121
Q ss_pred ccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--------Cc----------eeeEEeecccc----------ceeEE
Q 014114 300 CSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT--------RQ----------LLSAVFLKQHL----------NEVVF 350 (430)
Q Consensus 300 ~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~--------~~----------~~~~~~~~~~~----------~~~i~ 350 (430)
--...++..+|.. .+|+.|+.|-.+++||.+. +. ++.. +.++|. -..++
T Consensus 200 -lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-f~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 -LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-FSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred -hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe-ecCccccCcccccccceeeeE
Confidence 2356789999965 5789999999999999431 11 1221 123332 11257
Q ss_pred EeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 351 DSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 351 ~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
-+.|+|+|.- +..-....|++++++..+
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 7899999988 555555689999987643
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=6.7e-14 Score=114.96 Aligned_cols=116 Identities=21% Similarity=0.334 Sum_probs=92.9
Q ss_pred cceeEeEEeeCCCCCEEEEE--eCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEcc
Q 014114 214 TWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIR 288 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~ 288 (430)
..|.+++| +|+++.|++. ..++.|.+||++. + ++..+ +...+..|.|+|+|++|++++.+ |.|.+||++
T Consensus 60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 45999999 8999987654 4677999999973 3 24444 45688899999999999998744 669999999
Q ss_pred CCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeEE
Q 014114 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~ 339 (430)
+.+.+.++.. ..++.++|+|+|++|+++.. |+.++||+. +|+.+...
T Consensus 134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFEH---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeecccc---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 8888877654 35789999999999998864 788999998 47777663
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=140.56 Aligned_cols=269 Identities=10% Similarity=0.054 Sum_probs=200.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-+++||+.|..|+||..+++ .+.....+|.+.++-++++.. .-++++++.|..|++|-+.++.++..+.+|
T Consensus 203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~~----n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSSN----NTMIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccchh----hhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence 46899999999999999886 778899999999888888773 347899999999999999999999999886
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. +.|+++++.+ ..+.+.||++.+|+..+.+.... -+-.....+..+.++.|..++
T Consensus 274 t--------gavtaiafsP------------~~sss~dgt~~~wd~r~~~~~y~-----prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 274 T--------GAVTAIAFSP------------RASSSDDGTCRIWDARLEPRIYV-----PRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred c--------cceeeeccCc------------cccCCCCCceEeccccccccccC-----CCCCCcccccceeeeeccccc
Confidence 6 6888888765 33678899999999875432100 000111223456677777788
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
..+++++.|+.-..|....... +. ..+.-+.+. +....+.+++-.+..+.+|++.++. ..+.+
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~------~~---------~~lif~t~s-sd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l 391 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAW------RS---------NLLIFVTRS-SDLSSIVVTARNDHRLCVWNLYTGQ-LLHNL 391 (1113)
T ss_pred cccccccCCcccccchhhHhhh------hc---------cceEEEecc-ccccccceeeeeeeEeeeeecccch-hhhhh
Confidence 8899999999888876543111 00 111111221 1122456677778889999999976 47888
Q ss_pred eecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
.+|...+..+.++|-. +...+++.||...|||+-.+.+++.+.-. ...+..-.||++|..++....-|.++|.....+
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 8999999999999955 55567889999999999999887766544 467777899999999988888899999976554
Q ss_pred ce
Q 014114 334 QL 335 (430)
Q Consensus 334 ~~ 335 (430)
+.
T Consensus 471 ~s 472 (1113)
T KOG0644|consen 471 KS 472 (1113)
T ss_pred cc
Confidence 43
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=3.7e-14 Score=116.48 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=108.4
Q ss_pred EeEEeeCCCCCEEEEEeC----------CCcEEEEECCCCCcceEEeeec-CCCeEEEEeeCCCCEEEEE--cCCCCEEE
Q 014114 218 SAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIG--NGSGDLAS 284 (430)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~--~~dg~v~i 284 (430)
.+.| +++|.+|++-.. -+...+|.++....+...+... .++|.+++|+|+|+.|++. ..+..|.+
T Consensus 10 ~~~W--~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHW--QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEe--cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3445 778877665433 2345566665444455555543 4579999999999887554 46679999
Q ss_pred EEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-
Q 014114 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~- 360 (430)
||++ ++.+..+. ...++.|.|+|+|++|++++.+ |.|.+||+++.+.+.... | .. +..++|+|||++
T Consensus 88 yd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~-~~-~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 88 YDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---H-SD-ATDVEWSPDGRYL 158 (194)
T ss_pred EcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---c-Cc-EEEEEEcCCCCEE
Confidence 9996 67777764 4578899999999999998744 679999999888887632 2 22 589999999999
Q ss_pred eeec------CCCcEEEecCCC
Q 014114 361 NAAA------DAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~------~d~~v~vw~~~~ 376 (430)
+++. .|+.++||+...
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEeccceeccccEEEEEecC
Confidence 5554 378889999875
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=3.5e-13 Score=121.80 Aligned_cols=294 Identities=12% Similarity=0.081 Sum_probs=173.0
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEc-cCCeEEEeccCCCceeeeeeec
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++.||.|.++|+.+. +.+.++..... ...+++ ++||+|++++. ..+.+.|+|..+.+.+..+...
T Consensus 50 ~~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~---~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 50 YLYVANRDGTVSVIDLATG-----KVVATIKVGGN---PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEETTSEEEEEETTSS-----SEEEEEE-SSE---EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEEEcCCCeEEEEECCcc-----cEEEEEecCCC---cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 4777788999999999986 66666654333 334444 67889998765 6899999999999998888652
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
..... .....+.++...+... .++.. -+.+.+.+.+.... ..+..-............|+|+
T Consensus 120 ~~~~~-~~~~Rv~aIv~s~~~~--------~fVv~lkd~~~I~vVdy~d~--------~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 120 GMPVD-GPESRVAAIVASPGRP--------EFVVNLKDTGEIWVVDYSDP--------KNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EE-TT-TS---EEEEEE-SSSS--------EEEEEETTTTEEEEEETTTS--------SCEEEEEEE--TTEEEEEE-TT
T ss_pred ccccc-ccCCCceeEEecCCCC--------EEEEEEccCCeEEEEEeccc--------cccceeeecccccccccccCcc
Confidence 11000 0223455555444333 45444 44466666654321 1233333344567788999999
Q ss_pred CCEEEEe-cCCCeEEEEECCCCceeeeecCCCCC----CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC
Q 014114 174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 174 ~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 248 (430)
+++++.+ ..++.|-++|..+++.+..+...... ...+.|+.. ...|.....+...++.-....+.+||....+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~--g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF--GPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--EEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--ceEEeeccccceecccccCCccccchhhcCe
Confidence 9987764 55779999999998887665432111 011111111 1112112223333222233456678887755
Q ss_pred cceEEeeecCCCeEEEEeeCCCCEEEEE----cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC--
Q 014114 249 RPVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-- 322 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-- 322 (430)
.+..+.....+ ..+..+|+++++++. ...+.|.++|.++.+.+.++.......+..+.|+++|+.+..+..+
T Consensus 261 -vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 261 -VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp -EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred -EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 57778776666 788889999999998 4458899999999988888764323359999999999977665533
Q ss_pred CeEEEEeCCCCceeeEEe
Q 014114 323 SYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 323 ~~v~iwd~~~~~~~~~~~ 340 (430)
+.|.+||..+.+.+..+.
T Consensus 339 ~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 379999999999999864
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.2e-13 Score=115.01 Aligned_cols=270 Identities=14% Similarity=0.086 Sum_probs=176.8
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|+|+|+|+.+.- .+.|-|.++-+..+.+... +.|.-+.|-.... ..+.....++.+.+|++.
T Consensus 17 Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---------dki~yieW~ads~-------~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 17 SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---------DKIVYIEWKADSC-------HILCVAYKDPKVQVWSLV 79 (447)
T ss_pred CCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---------HHhhheeeeccce-------eeeeeeeccceEEEEEee
Confidence 8899999999876 7889998887776665543 2444455543222 255666788899999987
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
...-- -++ + +....+..++|+|+|+.| .+...+-.|.+|.+.+......-. .. ..+..++
T Consensus 80 Qpew~-------ckI-d-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK---------~~~kg~~ 140 (447)
T KOG4497|consen 80 QPEWY-------CKI-D-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PK---------TNVKGYA 140 (447)
T ss_pred cceeE-------EEe-c-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cc---------cCceeEE
Confidence 54311 111 1 224578899999999654 566678899999998866543322 11 2245667
Q ss_pred EeeCCCCCEEEEEeCC------------------------------------CcEEEEECCCCCcceEEeeec-CCCeEE
Q 014114 221 FLSIDDHRKFVAGTND------------------------------------HQVRLYDTSAQRRPVMSFDFR-ETPIKA 263 (430)
Q Consensus 221 ~~~~~~~~~l~~~~~d------------------------------------g~i~~wd~~~~~~~~~~~~~~-~~~i~~ 263 (430)
| +|++++.+.++.- ..+.+||.--..+ +. ..| .-.+..
T Consensus 141 f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~--aYe~~lG~k~ 215 (447)
T KOG4497|consen 141 F--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VY--AYERGLGLKF 215 (447)
T ss_pred E--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-ee--eeeeccceeE
Confidence 7 6777776655431 1233444322111 11 222 246889
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE-----------------------------------------------
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----------------------------------------------- 296 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----------------------------------------------- 296 (430)
++|+|.+++|++|+.|+.+|+.+--+.+...++
T Consensus 216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 999999999999999999998664332211111
Q ss_pred -------------ec-----cccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 297 -------------IG-----KCSGSIRSIARHPTLPIIASCGL--DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 297 -------------~~-----~~~~~v~~i~~s~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
+. .....+.-++|++|..++++-.. -+.+-+||++..+....+.. ...|....|+|
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP 371 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDP 371 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh----ccceeEEEeCC
Confidence 00 01235677999999999988753 36799999998877665321 23378899999
Q ss_pred Ccce-eeecCCCcEEEecCCC
Q 014114 357 KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 357 ~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.... +.......+++|....
T Consensus 372 ~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CCceEEEEcCCceEEEEcCCC
Confidence 8887 6666667799998764
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4.7e-13 Score=111.08 Aligned_cols=177 Identities=15% Similarity=0.192 Sum_probs=133.2
Q ss_pred CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC--CCe
Q 014114 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--TPI 261 (430)
Q Consensus 184 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~~i 261 (430)
+.|.|||=....++.++.-. ..|.++.+ ....|++. ..+.|++|...+.-+.++.+.... ..+
T Consensus 75 NkviIWDD~k~~~i~el~f~----------~~I~~V~l----~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGl 139 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN----------SEIKAVKL----RRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGL 139 (346)
T ss_pred ceEEEEecccCcEEEEEEec----------cceeeEEE----cCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCce
Confidence 57999997666777666543 56889988 34456655 467899999885333455554322 234
Q ss_pred EEEEeeCCCCEEEE-EcCCCCEEEEEccCCeE--EeEEeccccCcEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceee
Q 014114 262 KAVAEEPDSFNIYI-GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSY-LRFWDIKTRQLLS 337 (430)
Q Consensus 262 ~~~~~s~~~~~l~~-~~~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~-v~iwd~~~~~~~~ 337 (430)
.+++-+.+..+||. |-.-|.|.|-|+...+. ...+.+| .+.|.|++++.+|.++||+|..|+ |||||..+|+.+.
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 44443334445555 34569999999986655 4677888 999999999999999999999997 8999999999999
Q ss_pred EEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
.+ -+|...+.|++++|||+..+ +++++-|+|+||...+.
T Consensus 219 E~-RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 219 EL-RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ee-ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 96 34444556899999999999 88899999999998763
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=8.9e-13 Score=122.86 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=112.4
Q ss_pred EEEEcCCCCEEEEe-cCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-C--cEE
Q 014114 167 FSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~~-~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~i~ 240 (430)
.+.|+|+++.|+.. ..+| .|++||+.+++........ ..+....| +|+++.|+..+.+ + .|+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~----------~~~~~~~w--SPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------SNNTEPTW--FPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC----------CCcCceEE--CCCCCEEEEEeCCCCCceEE
Confidence 45789999887754 3344 5999999887654332221 23566788 8999988877654 4 455
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
++|+.++. ...+..+........|+|+|++|+..+.+ ..|.+||+.+++.. .+.. ........|+|||++|+
T Consensus 315 ~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 315 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--TFLDETPSIAPNGTMVI 389 (429)
T ss_pred EEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--CCCCCCceECCCCCEEE
Confidence 55666543 34444444456778999999998876543 35888999877643 3332 22345678999999999
Q ss_pred EEeCCCe---EEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 318 SCGLDSY---LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d~~---v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
.++.++. +.++++. |..... +.++. ..+...+|+|
T Consensus 390 ~~s~~~~~~~l~~~~~~-G~~~~~--l~~~~-~~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTD-GRFKAR--LPATD-GQVKFPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEECC-CCCeEE--CccCC-CCcCCcccCC
Confidence 9887764 7777874 555555 44443 3357788887
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.4e-13 Score=117.11 Aligned_cols=207 Identities=12% Similarity=0.053 Sum_probs=152.4
Q ss_pred eEEEEccCCeEEEeccCCCc----eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC--CeeEEEEe
Q 014114 67 LLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSI 140 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--g~i~v~~~ 140 (430)
.|+++..+|.+.+|....+. .+..+..+ ..+..+.-.+..+ +.+++|+.. ..+.||++
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g---------~g~~~~r~~~~~p-------~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG---------PGLYDVRQTDTDP-------YIVATGGKENINELKIWDL 180 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC---------CceeeeccCCCCC-------ceEecCchhcccceeeeec
Confidence 58888999999999987443 22222221 2333333333322 356668888 88999998
Q ss_pred eeecccccCCcceeeEEeecc----------CCceEEEEEcCC--CCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCC
Q 014114 141 EVTKVSAESSCSTVKSWNVCA----------SGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNS 207 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~----------~~~i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~ 207 (430)
+.. .++|.... .-.++++.|-+. ...|++++.-+.|++||.+.++ ++..+.-..
T Consensus 181 e~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--- 247 (412)
T KOG3881|consen 181 EQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--- 247 (412)
T ss_pred ccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence 754 33444321 234567888876 7899999999999999998754 344444332
Q ss_pred CCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEc
Q 014114 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~ 287 (430)
..++++.. .|+++++++|..-|.+..||++.++.+...+.+-.+.|++|..+|.++++++++-|..|||+|+
T Consensus 248 ------~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 248 ------NPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ------Ccceeeee--cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 56888888 7899999999999999999999977655568888899999999999999999999999999999
Q ss_pred cCCeEEeEEeccccCcEEEEEEcCC
Q 014114 288 RTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
.+.+++....- ...+++|.+.++
T Consensus 320 ktrkll~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhh--hccccEEEecCC
Confidence 99777665443 455677666543
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.3e-12 Score=119.05 Aligned_cols=195 Identities=11% Similarity=0.040 Sum_probs=130.5
Q ss_pred cCCceEEEEEcCCCCEEEEec---CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE-eCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d 236 (430)
+...+...+|+|+++.|+..+ .+..|++|++.+++....... . ..+....| +||++.|+.. +.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~---------~~~~~~~~--SPDG~~La~~~~~~ 264 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P---------RHNGAPAF--SPDGSKLAFALSKT 264 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-C---------CCcCCeEE--CCCCCEEEEEEcCC
Confidence 345788999999999888653 345799999988764332211 1 22345688 8999988765 344
Q ss_pred C--cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-CC--EEEEEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GD--LASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
| .|++||+.+++ ...+..+...+....|+|||+.|+..+.+ +. |.++|+.+++.. .+... ........|+|
T Consensus 265 g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~Sp 340 (429)
T PRK03629 265 GSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSS 340 (429)
T ss_pred CCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECC
Confidence 4 58899998754 34444445577889999999988777654 44 445577665443 33332 44566789999
Q ss_pred CCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCc---EEEecCCC
Q 014114 312 TLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM---LEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~---v~vw~~~~ 376 (430)
||++|+..+.+ ..|++||+.+++... + ... .......|+|||+. +..+.++. +.+++.+.
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-L--t~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--TDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEE-e--CCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 99998876643 358899998886443 2 211 11246789999998 66666654 56666543
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.9e-13 Score=111.90 Aligned_cols=191 Identities=13% Similarity=0.091 Sum_probs=136.5
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~ 241 (430)
-.+..++|++.-..++++..|-.|++||-.. .+...++.... ..|++++|- |. ...|++|+.. -|.+
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQ--------rnvtclawR--PlsaselavgCr~-gIci 166 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ--------RNVTCLAWR--PLSASELAVGCRA-GICI 166 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhh--------cceeEEEec--cCCcceeeeeecc-eeEE
Confidence 4678899999888889999999999999766 33344443321 459999994 44 4567777664 5889
Q ss_pred EECCCCC---c----------ceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccccCcEEEE
Q 014114 242 YDTSAQR---R----------PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (430)
Q Consensus 242 wd~~~~~---~----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i 307 (430)
|.....- + .+....+| .+|+++.|.+||..+++++ .|..|.|||..++..+.-.... .+.+.-+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slL 244 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLL 244 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeE
Confidence 9765311 1 12222334 6899999999999999988 5678999999998776544333 6789999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEE
Q 014114 308 ARHPTLPIIASCGLDSYLRFWDI-KTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEI 371 (430)
Q Consensus 308 ~~s~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~v 371 (430)
.||||+.+|+++.-|+..++|.. ++.....-+... +.|...+|+|+|++ ++.+....|+-
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs----grvqtacWspcGsfLLf~~sgsp~lys 307 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS----GRVQTACWSPCGSFLLFACSGSPRLYS 307 (445)
T ss_pred EEcCCCCEEEEecccceeeeehhcccceecceeccC----CceeeeeecCCCCEEEEEEcCCceEEE
Confidence 99999999999999999999954 333333322122 24788999999999 44444444443
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.2e-11 Score=116.09 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=132.3
Q ss_pred ccCCceEEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE-EEeC
Q 014114 160 CASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTN 235 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~ 235 (430)
.+...+.+.+|+|+++.|+..+. +..|++||+.+++... +.... ..+....| +|+++.|+ +.+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~---------g~~~~~~~--SPDG~~la~~~~~ 266 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP---------GMTFAPRF--SPDGRKVVMSLSQ 266 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC---------CcccCcEE--CCCCCEEEEEEec
Confidence 34568999999999998887653 4689999998876533 22221 33556788 89998776 4455
Q ss_pred CCc--EEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CC--CEEEEEccCCeEEeEEeccccCcEEEEEEc
Q 014114 236 DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 236 dg~--i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s 310 (430)
++. |++||+.++. ...+..+........|+|||+.|+..+. +| .|+++|+..++.. .+..+ ...+....|+
T Consensus 267 ~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~S 342 (435)
T PRK05137 267 GGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWS 342 (435)
T ss_pred CCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEEC
Confidence 554 7778888754 4556656666778999999998887764 33 5888898765543 33333 4556778999
Q ss_pred CCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC-C-----CcEEEecCCC
Q 014114 311 PTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-A-----PMLEIQNGND 376 (430)
Q Consensus 311 ~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~-d-----~~v~vw~~~~ 376 (430)
|+|++|+..+.+ ..|.+||+.++.. ..+ ..+. .+..+.|+|||+. +..+. . ..|.+++...
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l-t~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL-TSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCce-Eec-cCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 999998877643 3688899865543 332 1111 2467899999998 44333 2 2466666544
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=2.2e-12 Score=122.91 Aligned_cols=190 Identities=16% Similarity=0.119 Sum_probs=146.6
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
..++..+.++.+.+|+...........-....+. ....-+-++++.-++++|+.-+.|.+|+......-..+.+|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l-----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL-----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEE-----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence 3778888888898988754432211111011111 11222345667789999999999999998733332234444
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
. +.+.++.| +.++.++++.++|.++++|++.+.+......-+|...+..+.|.|+ .+++++.|.+.+
T Consensus 175 e---------G~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr 241 (967)
T KOG0974|consen 175 E---------GSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR 241 (967)
T ss_pred C---------CceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE
Confidence 4 77889999 8899999999999999999999977655466789999999999998 999999999999
Q ss_pred EEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+|+. .+..+..+..|....|+.++..++...++|++.|+.+++|++..
T Consensus 242 vW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 242 VWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9976 46666688888788999999999999999999999999999754
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.7e-12 Score=118.88 Aligned_cols=184 Identities=15% Similarity=0.038 Sum_probs=121.9
Q ss_pred cCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d 236 (430)
+...+.+.+|+|+++.|+..+.+ ..|++||+.+++....... . ..+....| +|+++.|+. .+.+
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~---------g~~~~~~~--SPDG~~la~~~~~~ 261 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-K---------GSNSAPAW--SPDGRTLAVALSRD 261 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-C---------CCccceEE--CCCCCEEEEEEccC
Confidence 45678899999999998876543 4599999998865432211 1 23456788 899988864 5677
Q ss_pred CcEEEEE--CCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CCCEEEEEc--cCCeEEeEEeccccCcEEEEEEcC
Q 014114 237 HQVRLYD--TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g~i~~wd--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~v~iwd~--~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
+...+|. +..+. ...+..+........|+|||+.|+..+. ++...||.+ .+++.. .+... .......+|+|
T Consensus 262 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-g~~~~~~~~Sp 337 (427)
T PRK02889 262 GNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-GSYNTSPRISP 337 (427)
T ss_pred CCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-CCCcCceEECC
Confidence 7766665 44332 4455555555677899999998886654 456666654 444332 22222 23345678999
Q ss_pred CCCEEEEEeCCC---eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC
Q 014114 312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 312 ~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~ 365 (430)
+|++|+..+.++ .|++||+.+++.... .... ......|+|||+. +..+.
T Consensus 338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l--t~~~---~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 338 DGKLLAYISRVGGAFKLYVQDLATGQVTAL--TDTT---RDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCEEEEEEccCCcEEEEEEECCCCCeEEc--cCCC---CccCceECCCCCEEEEEEe
Confidence 999998777554 699999988775432 2221 1356799999998 54443
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.3e-12 Score=117.74 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=108.2
Q ss_pred EEEEcCCCCEEEE-ecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CCc--EE
Q 014114 167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQ--VR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~--i~ 240 (430)
+..|+|+++.|+. .+.+| .|++||+.+++... +..+. ......+| +|+++.|+.++. +|. |+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~---------~~~~~~~~--spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF---------GIDTEPTW--APDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCCEEEEEECCCCCceEE
Confidence 4578888887653 34444 59999998876533 32221 22345688 899998887764 444 66
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC---CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
++|+.+++ ...+..+......++|+|+|++|+..+.++ .|.+||+.+++.. .+.. ........|+|||++|+
T Consensus 320 ~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 320 RVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVL 394 (433)
T ss_pred EEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEE
Confidence 77776644 333333334455789999999998765443 5999999887654 3332 22455679999999887
Q ss_pred EEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 318 SCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
..+.+ +.|+++++.. ..... +..+ ...+..++|+|
T Consensus 395 ~~s~~~g~~~L~~~~~~g-~~~~~--l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 395 YATREGGRGVLAAVSTDG-RVRQR--LVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEecCCceEEEEEECCC-CceEE--cccC-CCCCCCCccCC
Confidence 76653 4688888854 44444 2222 22346667776
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=2.5e-12 Score=107.85 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=171.0
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCc-----eeeeeeecCCCCC----CCCCCceEEEEeeccCccccccCCc
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGA----QPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
+.++.| ...|.+||+|..+|+|.++.-.... ....++.|.+.-- ..-...|..+.|++... ..
T Consensus 28 is~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n------~a 99 (433)
T KOG1354|consen 28 ISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN------LA 99 (433)
T ss_pred eeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC------cc
Confidence 555666 5578999999999999999754322 2223333332110 01123455677776554 34
Q ss_pred eEEEEccCCeeEEEEeeeecccc---------------------------cCCcceeeEEeeccCCceEEEEEcCCCCEE
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSA---------------------------ESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~---------------------------~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
.++..+.|.++++|.+....... .....+.+++.-.|.-.|.+++++.+.+.+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 88888999999999986543210 001123344444556678999999999888
Q ss_pred EEecCCCeEEEEECCCCcee---eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc---e
Q 014114 178 LFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---V 251 (430)
Q Consensus 178 ~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~ 251 (430)
+++ .|=.|.+|+++--..- ..++.+....+ ..-|++..|+| ...+.|+..+..|+|++.|++....+ .
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeL----teVITsaEFhp-~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEEL----TEVITSAEFHP-HHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHH----HHHHhhhccCH-hHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 865 5668999998643322 22232221110 13478888952 34667888899999999999842211 0
Q ss_pred EEeee------------cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccc-----------cCc---E
Q 014114 252 MSFDF------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKC-----------SGS---I 304 (430)
Q Consensus 252 ~~~~~------------~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~-----------~~~---v 304 (430)
..+.. --..|..+.|+++|++|++-.. -+|++||+. ..+++.++..|. ... -
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 11111 1246888999999999997532 579999994 456676666551 122 2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
..++|+-++.+++||+....+++|++..|
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCCCC
Confidence 45789999999999999999999996544
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=1.6e-11 Score=102.46 Aligned_cols=306 Identities=14% Similarity=0.120 Sum_probs=186.2
Q ss_pred CCCCCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCce-EEEEccCCeEEEeccCCCce
Q 014114 9 CPGCPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 9 ~~~~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~-l~~g~~dg~i~iwd~~~~~~ 87 (430)
|.--|..+-++...+-.+.|-|..+- ++.+.|..-+ . +.-+.| ..|..+ |.....++.|.+|++..-+-
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tl-----q~~qlf~cld-k--i~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETL-----QLHQLFLCLD-K--IVYIEW--KADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchh-----hHHHHHHHHH-H--hhheee--eccceeeeeeeeccceEEEEEeeccee
Confidence 44445566666665667777777763 4444443322 2 222222 233344 45577889999999976665
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc-CCceE
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIA 166 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~ 166 (430)
...+.. +.+++..+.|.+..+ ..+.+...+-.+.||++....- +.+.+ ...+.
T Consensus 84 ~ckIde--------g~agls~~~WSPdgr-------hiL~tseF~lriTVWSL~t~~~-----------~~~~~pK~~~k 137 (447)
T KOG4497|consen 84 YCKIDE--------GQAGLSSISWSPDGR-------HILLTSEFDLRITVWSLNTQKG-----------YLLPHPKTNVK 137 (447)
T ss_pred EEEecc--------CCCcceeeeECCCcc-------eEeeeecceeEEEEEEecccee-----------EEecccccCce
Confidence 555543 334677777776543 3667777788899999875431 11111 22345
Q ss_pred EEEEcCCCCEEEEecCC------------------------------------CeEEEEECCCCceeeeecCCCCCCCCc
Q 014114 167 FSKVDISEKFSLFGGKG------------------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 210 (430)
.++|+|++++.+..+.- +.+.+||---.-.+..++.
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-------- 209 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------- 209 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee--------
Confidence 66666666665544321 1122333211111111111
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC------------------------------------------
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------------------------------------------ 248 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------------------------------------------ 248 (430)
.-.+..+.| +|.+++|++|+.|+.+++.+--+-+
T Consensus 210 --~lG~k~v~w--sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 210 --GLGLKFVEW--SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred --ccceeEEEe--ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 134777888 8999999999999998875421100
Q ss_pred ---------------cc--eEEee------ecCCCeEEEEeeCCCCEEEEEcCC--CCEEEEEccCCeEEeEEeccccCc
Q 014114 249 ---------------RP--VMSFD------FRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 249 ---------------~~--~~~~~------~~~~~i~~~~~s~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
.+ +..++ .....+.-++|++|..++++-... +.+-+||++..+....+.. ..+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~p 363 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHP 363 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccc
Confidence 00 00011 011245668999999999887533 5699999988776555544 568
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCc
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~ 368 (430)
|....|+|....|+.+.....+++|.......+.. ..+| -.|..+.|.-+|.. +..+.|..
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~G---F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKG---FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCC---ceeeeEEecCCCcEEEEEcCCce
Confidence 99999999998888888788899998765444332 2222 34799999999999 66666654
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.8e-12 Score=116.43 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=130.1
Q ss_pred cCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d 236 (430)
+...+.+.+|+|+++.|+..+.+ ..|++||+.+++..... ... ....+..| +|+++.|+. .+.+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~---------g~~~~~~~--SpDG~~l~~~~s~~ 269 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR---------GINGAPSF--SPDGRRLALTLSRD 269 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC---------CCccCceE--CCCCCEEEEEEeCC
Confidence 45578899999999998877643 46999999887654322 111 22346688 899987754 4555
Q ss_pred C--cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CCC--EEEEEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
+ .|++||+.+++ ...+..+......++|+|||+.|+..+. +|. |.++|+.+++... +..+ ......++|+|
T Consensus 270 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~Sp 345 (433)
T PRK04922 270 GNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSP 345 (433)
T ss_pred CCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECC
Confidence 5 59999998754 4455555555678899999998887764 444 6677776665432 2222 33455789999
Q ss_pred CCCEEEEEeCCC---eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC-C--CcEEEecCCC
Q 014114 312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-A--PMLEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~-d--~~v~vw~~~~ 376 (430)
+|++|+..+.++ .|.+||+.+++.. .+ ..+. ......|+|||+. +..+. . ..|.+++...
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L-t~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL-TPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE-EC-CCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 999988765433 6999999887755 32 1221 2356799999998 44433 2 3466666543
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.7e-11 Score=113.68 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCEEE-EecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CC--c
Q 014114 165 IAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--Q 238 (430)
Q Consensus 165 i~~~~~~~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~ 238 (430)
+...+|+|+++.|+ +.+.++ .|++||+.++.... +..+. .......| +|+++.|+..+. +| .
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~---------~~~~~~~~--spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP---------AIDTSPSY--SPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC---------CccCceeE--cCCCCEEEEEECCCCCCe
Confidence 34557888888765 444444 48888988776533 33221 22455788 899998887764 33 6
Q ss_pred EEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCE
Q 014114 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 315 (430)
|+++|+..+. ...+..+...+....|+|+|+.|+....+ ..|.+||+..+.. ..+.. ...+..+.|+|||++
T Consensus 316 Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~ 390 (435)
T PRK05137 316 LYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCE
Confidence 8888887643 34444445567778999999999877643 3578888855433 33332 335678899999998
Q ss_pred EEEEeCC------CeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 316 IASCGLD------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 316 l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
|+..+.+ ..++++|+..+.. ..+ .. ...+...+|+|
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l--~~--~~~~~~p~Wsp 432 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRNE-REV--PT--PGDASDPAWSP 432 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCce-EEc--cC--CCCccCcccCC
Confidence 8765543 2588888866554 332 21 11235667776
No 238
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.49 E-value=1.5e-10 Score=106.84 Aligned_cols=308 Identities=12% Similarity=0.099 Sum_probs=185.8
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeee
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
....++++++.+|.|..+|..++ +.+-.+.-........ ..++..+++++.+|.|..+|..+|+.+...
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~~p------~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETG-----KRLWRVDLDERLSGGV------GADGGLVFVGTEKGEVIALDAEDGKELWRA 131 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCC-----cEeeeecCCCCcccce------EEcCCEEEEEcCCCEEEEEECCCCcEeeee
Confidence 33467899999999999998775 3332222111110011 123456889999999999999999988776
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE--
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK-- 169 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~-- 169 (430)
.... .+.+.... .++.++.+..+|.+..++..... .+|..........+.
T Consensus 132 ~~~~---------~~~~~p~v---------~~~~v~v~~~~g~l~a~d~~tG~----------~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 132 KLSS---------EVLSPPLV---------ANGLVVVRTNDGRLTALDAATGE----------RLWTYSRVTPALTLRGS 183 (377)
T ss_pred ccCc---------eeecCCEE---------ECCEEEEECCCCeEEEEEcCCCc----------eeeEEccCCCceeecCC
Confidence 5411 11111111 12367777888888888875432 234433322211111
Q ss_pred EcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC-CCcccCcce-eEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 170 VDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 170 ~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
-+| .+..++.+..++.+..+|+.+++.++......... ........+ ....+ .+..+++++.+|.++.||..
T Consensus 184 ~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 184 ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEcCCEEEEEECC
Confidence 011 23467778889999999999999887654221100 000000001 11112 34577888889999999999
Q ss_pred CCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeE
Q 014114 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v 325 (430)
+++. +..... .....+.. .+..+++++.+|.|..+|..+++.+............+... .+..|++++.+|.|
T Consensus 260 tG~~-~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l 332 (377)
T TIGR03300 260 SGRV-LWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYL 332 (377)
T ss_pred CCcE-EEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEE
Confidence 8763 443332 11222222 45688888899999999999998876653220122222222 45688899999999
Q ss_pred EEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
+++|..+|+.+..+.+.+ ........+. ++.++.++.||.|..|
T Consensus 333 ~~~d~~tG~~~~~~~~~~--~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 333 HWLSREDGSFVARLKTDG--SGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEECCCCCEEEEEEcCC--CccccCCEEE-CCEEEEEeCCceEEEe
Confidence 999999999998854332 1222222333 4557888889988775
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.4e-11 Score=114.94 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=104.5
Q ss_pred EEEEEcCCCCEEE-EecCCCeEEEE--ECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CCcEEE
Q 014114 166 AFSKVDISEKFSL-FGGKGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~-~~~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~ 241 (430)
...+|+|+++.|+ +.+.++...+| |+..+. ...+..+. .......| +||++.|+..+. ++...+
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~---------~~~~~~~w--SpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS---------GIDTEPFF--SPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC---------CCCcCeEE--cCCCCEEEEEecCCCCcEE
Confidence 3567899988776 45666665555 554443 33333221 22445678 899998876654 456666
Q ss_pred EEC--CCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC---CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 242 YDT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 242 wd~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
|.+ ..+. ...+..+.......+|+|+|++|+..+.++ .|.+||+.+++... +.. ........|+|||+.|
T Consensus 311 y~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l 385 (427)
T PRK02889 311 YRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYI 385 (427)
T ss_pred EEEECCCCc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEE
Confidence 654 4433 233333333445678999999998776554 59999998876543 322 2234678999999998
Q ss_pred EEEeCCC---eEEEEeCCCCceeeEEeeccccceeEEEeeecCC
Q 014114 317 ASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 317 ~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
+.++.++ .+++.++ ++.....+ ..+ .+.+...+|+|-
T Consensus 386 ~~~~~~~g~~~l~~~~~-~g~~~~~l--~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 386 LYATQQGGRSVLAAVSS-DGRIKQRL--SVQ-GGDVREPSWGPF 425 (427)
T ss_pred EEEEecCCCEEEEEEEC-CCCceEEe--ecC-CCCCCCCccCCC
Confidence 8777544 3666666 45555443 222 222466688763
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=7.3e-12 Score=111.92 Aligned_cols=274 Identities=16% Similarity=0.109 Sum_probs=178.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcc--eEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSS--KCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
-.++||...-.|++||+.. +...|..|..+ +.+.-++-|.+ -++.-..|..|.+-.- .|.- ..+.
T Consensus 65 Y~lAtG~YKP~ikvydlan-------LSLKFERhlDae~V~feiLsDD~S----K~v~L~~DR~IefHak-~G~h-y~~R 131 (703)
T KOG2321|consen 65 YLLATGTYKPQIKVYDLAN-------LSLKFERHLDAEVVDFEILSDDYS----KSVFLQNDRTIEFHAK-YGRH-YRTR 131 (703)
T ss_pred EEEEecccCCceEEEEccc-------ceeeeeecccccceeEEEeccchh----hheEeecCceeeehhh-cCee-eeee
Confidence 3478888888999999986 45566666443 22233333223 2444556666666542 2221 1111
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
. |. .-..+++... .+-|+.++....++-.+++.+. -+.-+.. ..+.+.++..++
T Consensus 132 I-------P~--~GRDm~y~~~--------scDly~~gsg~evYRlNLEqGr--------fL~P~~~-~~~~lN~v~in~ 185 (703)
T KOG2321|consen 132 I-------PK--FGRDMKYHKP--------SCDLYLVGSGSEVYRLNLEQGR--------FLNPFET-DSGELNVVSINE 185 (703)
T ss_pred c-------Cc--CCccccccCC--------CccEEEeecCcceEEEEccccc--------ccccccc-ccccceeeeecC
Confidence 1 00 1112233221 2255666666666666666443 2222222 247899999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCC--CCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
...+|++|+.+|.|..||.+....+..+..... ..........|+++.| +.+|-.+++|+.+|.|.|||++..+..
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEe--cCCceeEEeeccCCcEEEEEcccCCce
Confidence 999999999999999999998777666554322 0001111245999999 777999999999999999999985532
Q ss_pred eEEeeecCCCeEEEEeeCC--CCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 251 VMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
+..-.....+|..+.|.+. +..+++. ....++|||-.+|+....+.. ...++.+++-|++-+++++-.+..+..|
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeE
Confidence 2222333568999999765 3444443 557799999999999988877 4669999999999999999988877776
Q ss_pred eCCC
Q 014114 329 DIKT 332 (430)
Q Consensus 329 d~~~ 332 (430)
=+..
T Consensus 341 yiP~ 344 (703)
T KOG2321|consen 341 YIPS 344 (703)
T ss_pred Eccc
Confidence 5544
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.2e-11 Score=111.22 Aligned_cols=213 Identities=11% Similarity=0.125 Sum_probs=155.0
Q ss_pred CCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
|.+.|+|....||.++||+...+++...+.... ..+..+.-..|.+.-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------------------------~~s~t~~~~~w~L~~ 50 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------------------------SLSGTCTYTKWGLSA 50 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch--------------------------------hccCcceeEEEEEEe
Confidence 456789999999999999999888776664311 011112233343221
Q ss_pred ecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEe
Q 014114 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
.. .+.+ |... .. ....+-+...++-|...|.|.+|+...++..+.+.... |.+.|+++.+
T Consensus 51 ~~-------s~~k-~~~~--~~--~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~-------h~~~v~~~~~- 110 (541)
T KOG4547|consen 51 DY-------SPMK-WLSL--EK--AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDK-------HYGNVNEILD- 110 (541)
T ss_pred cc-------chHH-HHhH--HH--HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCC-------CCCcceeeec-
Confidence 11 0111 1000 00 00112255678889999999999999999988887543 3367888888
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccC
Q 014114 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
..+-..|.+++.|+.+..|+..... .+..+......+.+++++||+..+++++ +.|++||+++++.+.+|.+| .+
T Consensus 111 -~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s 185 (541)
T KOG4547|consen 111 -AQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GS 185 (541)
T ss_pred -ccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC-Cc
Confidence 6777899999999999999998844 5788888888999999999999999876 67999999999999999998 99
Q ss_pred cEEEEEEcCC-----CCEEE-EEeCCCeEEEEeCCC
Q 014114 303 SIRSIARHPT-----LPIIA-SCGLDSYLRFWDIKT 332 (430)
Q Consensus 303 ~v~~i~~s~~-----~~~l~-s~~~d~~v~iwd~~~ 332 (430)
+|+++.|--+ |.+++ +...+.-+.+|-+..
T Consensus 186 ~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 186 PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999876 55554 445666688886543
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.1e-11 Score=111.45 Aligned_cols=192 Identities=14% Similarity=0.118 Sum_probs=150.3
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee------------------CCCCCEEEEE
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------------IDDHRKFVAG 233 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~~l~~~ 233 (430)
|...++|....||.+++|+..+++....+.....-. +..++..|.. +.+...++-|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS------GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhcc------CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 456789999999999999999888776665432111 1222222211 2344578889
Q ss_pred eCCCcEEEEECCCCCcceEEee--ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 234 TNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
...|.|.+|+...++- ...+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+... ...+.+++.+|
T Consensus 77 t~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~ 154 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISP 154 (541)
T ss_pred cCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcC
Confidence 9999999999998763 44443 58899999999999899999999999999999999999999987 88999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC-----cce-e-eecCCCcEEEecCCC
Q 014114 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK-----EVA-N-AAADAPMLEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~-~-~~~~d~~v~vw~~~~ 376 (430)
|+..|++++ ++|.+||+++++.+.. +.+| .++|.++.|..+ |.+ + +...+..+.+|-...
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~--ftgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVIT--FTGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEE--ecCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999987 6899999999999998 7788 555799999877 666 3 344455667776554
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=4.6e-09 Score=95.33 Aligned_cols=282 Identities=17% Similarity=0.148 Sum_probs=165.5
Q ss_pred CcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc----CCeEEEeccCCC-ceeeeeeecCCCC
Q 014114 24 GLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG-DLRVAISNAGDSG 98 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~----dg~i~iwd~~~~-~~~~~~~~~~~~~ 98 (430)
+.|.+|+++. +.+....+..+.....+ ..+++ +|++++|++... +|.|..|.+... ..+..+.....
T Consensus 13 ~gI~~~~~d~-~~g~l~~~~~~~~~~~P-s~l~~----~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-- 84 (345)
T PF10282_consen 13 GGIYVFRFDE-ETGTLTLVQTVAEGENP-SWLAV----SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-- 84 (345)
T ss_dssp TEEEEEEEET-TTTEEEEEEEEEESSSE-CCEEE-----TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--
T ss_pred CcEEEEEEcC-CCCCceEeeeecCCCCC-ceEEE----EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--
Confidence 7899999954 22333333333222221 23444 567788888765 578999998764 22222222110
Q ss_pred CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee---------ccCCceEEEE
Q 014114 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---------CASGTIAFSK 169 (430)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~---------~~~~~i~~~~ 169 (430)
.......+.+.+... ..+++...+|.+.++++....... ....++.. .......++.
T Consensus 85 ---~g~~p~~i~~~~~g~-------~l~vany~~g~v~v~~l~~~g~l~----~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 85 ---GGSSPCHIAVDPDGR-------FLYVANYGGGSVSVFPLDDDGSLG----EVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp ---SSSCEEEEEECTTSS-------EEEEEETTTTEEEEEEECTTSEEE----EEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred ---CCCCcEEEEEecCCC-------EEEEEEccCCeEEEEEccCCcccc----eeeeecccCCCCCcccccccccceeEE
Confidence 112333455544333 244444578999999987532111 11112211 1235578999
Q ss_pred EcCCCCEEEEecC-CCeEEEEECCCCc--ee--eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEE
Q 014114 170 VDISEKFSLFGGK-GVEVNVWDLDKCE--KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD 243 (430)
Q Consensus 170 ~~~~~~~l~~~~~-dg~v~iwd~~~~~--~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd 243 (430)
++|+++++++... ...|.+|++.... .. ..+.... ......+.| +|+++++++.. .++.|.+++
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--------G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--------GSGPRHLAF--SPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--------TSSEEEEEE---TTSSEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--------CCCCcEEEE--cCCcCEEEEecCCCCcEEEEe
Confidence 9999998887532 3479999997654 21 1222111 145778999 88998876654 577899999
Q ss_pred CCCCC-c--ceEEeee------cCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEcc--CC--eEEeEEeccccCcEEEEEE
Q 014114 244 TSAQR-R--PVMSFDF------RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TG--KLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 244 ~~~~~-~--~~~~~~~------~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~--~~--~~~~~~~~~~~~~v~~i~~ 309 (430)
+.... . .+..+.. .......|+++|||++|+++. ..+.|.+|++. ++ +.+..+... ....+.+++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~ 299 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAF 299 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEE
Confidence 88211 1 1111211 112578899999999988876 45779999983 33 334444443 445899999
Q ss_pred cCCCCEEEEEe-CCCeEEEEeC--CCCceeeE
Q 014114 310 HPTLPIIASCG-LDSYLRFWDI--KTRQLLSA 338 (430)
Q Consensus 310 s~~~~~l~s~~-~d~~v~iwd~--~~~~~~~~ 338 (430)
+|+|++|+++. .++.|.+|++ .+|.+...
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 99999998887 5678999976 46665544
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=3.5e-09 Score=96.06 Aligned_cols=242 Identities=16% Similarity=0.116 Sum_probs=148.1
Q ss_pred eEEEEcc----CCeeEEEEeeeecccccCCcceeeEEee-c-cCCceEEEEEcCCCCEEEEec-CCCeEEEEECCC-Cce
Q 014114 125 TLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNV-C-ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDK-CEK 196 (430)
Q Consensus 125 ~~~~~~~----~g~i~v~~~~~~~~~~~~~~~~i~~~~~-~-~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~-~~~ 196 (430)
.|.+..+ .|.+..|.+.... +.+..... . .+.....++++|++++|+++. .+|.|.++++.. +..
T Consensus 50 ~LY~~~e~~~~~g~v~~~~i~~~~-------g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l 122 (345)
T PF10282_consen 50 RLYVVNEGSGDSGGVSSYRIDPDT-------GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL 122 (345)
T ss_dssp EEEEEETTSSTTTEEEEEEEETTT-------TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE
T ss_pred EEEEEEccccCCCCEEEEEECCCc-------ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc
Confidence 6666655 4677777776421 22222221 1 345567899999999999876 489999999987 332
Q ss_pred eee---ecCCC-CCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcce---EEee-ecCCCeEEEEee
Q 014114 197 IWT---AKPPP-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPV---MSFD-FRETPIKAVAEE 267 (430)
Q Consensus 197 ~~~---~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~---~~~~-~~~~~i~~~~~s 267 (430)
... +.... .............++.| +|+++++++.. ....|.+|++......+ ..+. .....-+.++|+
T Consensus 123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred ceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence 222 11000 00000011245778888 89999887765 34589999997644212 2222 234567899999
Q ss_pred CCCCEEEEEc-CCCCEEEEEcc--CCe--EEeEEecc-----ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCC--CCc
Q 014114 268 PDSFNIYIGN-GSGDLASVDIR--TGK--LLGCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIK--TRQ 334 (430)
Q Consensus 268 ~~~~~l~~~~-~dg~v~iwd~~--~~~--~~~~~~~~-----~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~--~~~ 334 (430)
|+++++++.. .++.|.+|++. ++. .+..+... .......|+++|||++|+++. ..+.|.+|++. +++
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 9999886665 56789999988 443 23333321 012678999999999987766 66789999993 343
Q ss_pred eeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 335 LLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+...-..... ......++++|+|++ ++...++.|.+|+.+.
T Consensus 281 l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 281 LTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 3222112211 222589999999999 4455778999998764
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=8.7e-11 Score=96.74 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=167.0
Q ss_pred CCcEEEEEecCccCCcchhhe--ecCC-CCcceEEEEeccCCCCCCc-eEEEEccCCeEEEeccCCCceeeeeeecCCCC
Q 014114 23 LGLIKVIEARGEDGGVPKVVE--RWGD-PHSSKCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 98 (430)
.|.+.++++... ++.. .++. ....+..+-++... .+|. .|+-+...|.|.++..........+.+.....
T Consensus 45 ~Gkl~Lys~~d~-----~~~~l~~~q~~dts~~~dm~w~~~~-~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDM-----KLSPLDTLQCTDTSTEFDMLWRIRE-TDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK 118 (339)
T ss_pred ccceEEEeeccc-----ccCccceeeeecccccceeeeeecc-CCccceeeeccccceEEEEeeccceeeeeecccchhh
Confidence 367888988763 2211 1111 12233333444311 2344 46778888999999875544444444432111
Q ss_pred CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEE
Q 014114 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFS 177 (430)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l 177 (430)
.+. ..-.++.|-.... .++++..+|.+.+-+..... -+.+..|. .|.-.++...|+. +.+++
T Consensus 119 i~~--~~~lslD~~~~~~--------~i~vs~s~G~~~~v~~t~~~------le~vq~wk-~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 119 ISV--VEALSLDISTSGT--------KIFVSDSRGSISGVYETEMV------LEKVQTWK-VHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred hhh--eeeeEEEeeccCc--------eEEEEcCCCcEEEEecceee------eeeccccc-ccceeeeeeecccCCCceE
Confidence 100 0123344444333 68888888888844332211 13455666 3566778888875 55789
Q ss_pred EEecCCCeEEEEECC-CCceeee-ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee
Q 014114 178 LFGGKGVEVNVWDLD-KCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 178 ~~~~~dg~v~iwd~~-~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 255 (430)
++|+.|+.+..||++ .++.++. .+.| ...|.++.-. .|.+.+|++|+.|..|++||.++..+|+..-.
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH---------~~GV~SI~ss-~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~ 251 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVH---------TSGVVSIYSS-PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK 251 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceee---------ecceEEEecC-CCCCceEEEeccccceeeeehhcccCccccCc
Confidence 999999999999998 3444443 2222 2557777664 56788999999999999999998777766544
Q ss_pred ecCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCCe-----EEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEE-E
Q 014114 256 FRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLR-F 327 (430)
Q Consensus 256 ~~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~-i 327 (430)
. .+.|..+.++|.-. .++.++.-+-.+|-+...+. .....+.| .+-+..-.|.....+|+|++ .|+.++ +
T Consensus 252 v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~ 329 (339)
T KOG0280|consen 252 V-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQL 329 (339)
T ss_pred c-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeee
Confidence 3 37899999998532 33334444446777765432 33344555 66677777755556788876 666644 6
Q ss_pred EeCCCC
Q 014114 328 WDIKTR 333 (430)
Q Consensus 328 wd~~~~ 333 (430)
|-.-++
T Consensus 330 Wl~~t~ 335 (339)
T KOG0280|consen 330 WLHITG 335 (339)
T ss_pred eeeccC
Confidence 644433
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=5.5e-11 Score=97.91 Aligned_cols=273 Identities=13% Similarity=0.116 Sum_probs=166.5
Q ss_pred cCCeEEEeccCCCceee--eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCC
Q 014114 73 KNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (430)
Q Consensus 73 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~ 150 (430)
..|.+.+|++.+.+... .+... ....+..+.|-.... ..+-.++-+-..|.+.++......... .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~-------dts~~~dm~w~~~~~----~g~~~l~~a~a~G~i~~~r~~~~~ss~--~ 110 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCT-------DTSTEFDMLWRIRET----DGDFNLLDAHARGQIQLYRNDEDESSV--H 110 (339)
T ss_pred eccceEEEeecccccCccceeeee-------cccccceeeeeeccC----CccceeeeccccceEEEEeeccceeee--e
Confidence 45788999987766554 11110 001233333332222 011256666778888888766543211 0
Q ss_pred cceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeeecCCCCCCCCcccCcceeEeEEeeCCCCC
Q 014114 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (430)
Q Consensus 151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (430)
-..+..-... .....++.|++.+..++++-.+|.+.+-+...... ++..+.|. -.+..+.|. ..+.+
T Consensus 111 L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He---------~E~Wta~f~-~~~pn 179 (339)
T KOG0280|consen 111 LRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE---------FEAWTAKFS-DKEPN 179 (339)
T ss_pred ecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc---------eeeeeeecc-cCCCc
Confidence 0000000000 01346788899999999999999998666544333 23555554 335555664 44568
Q ss_pred EEEEEeCCCcEEEEECCCCCcceEE-eeecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccccCcEE
Q 014114 229 KFVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 229 ~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~ 305 (430)
++.+|+.|+.+..||++.++..+.. .+.|...|.+|.-+| .+.+|++|+.|-.|++||.+ -++++..-.. .+.|+
T Consensus 180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v--~GGVW 257 (339)
T KOG0280|consen 180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV--GGGVW 257 (339)
T ss_pred eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc--ccceE
Confidence 9999999999999999954443333 567888999998775 57899999999999999999 4667655443 68999
Q ss_pred EEEEcCCC--CEEEEEeCCCeEEEEeCCCCcee--eEEe-eccccceeEEEeeecCCcce-eee-cCCCcEE-Eec
Q 014114 306 SIARHPTL--PIIASCGLDSYLRFWDIKTRQLL--SAVF-LKQHLNEVVFDSAFADKEVA-NAA-ADAPMLE-IQN 373 (430)
Q Consensus 306 ~i~~s~~~--~~l~s~~~d~~v~iwd~~~~~~~--~~~~-~~~~~~~~i~~~~~s~~g~~-~~~-~~d~~v~-vw~ 373 (430)
.+.++|.- .+|+++...| ++|-+...+..- ..++ ...| .+.++...|.....+ +++ ..|..++ +|-
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred EEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeeee
Confidence 99999954 4566666666 667766543322 1111 2233 455666677444334 443 3455544 554
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.7e-10 Score=108.27 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=125.8
Q ss_pred cCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d 236 (430)
+...+...+|+|++++|+.+... ..|++||+.+++...... .. ..+.++.| +|+++.|+. .+.+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~--spDg~~l~~~~~~~ 255 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAF--SPDGSKLAVSLSKD 255 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEE--CCCCCEEEEEECCC
Confidence 34568888999999999877543 479999998876543222 11 23456788 899987764 3444
Q ss_pred C--cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-C--CEEEEEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
+ .|++||+.++. ...+..+........|+|+++.|+..+.. + .|.++|+.+++.. .+..+ ...+..+.|+|
T Consensus 256 ~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~sp 331 (417)
T TIGR02800 256 GNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSP 331 (417)
T ss_pred CCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECC
Confidence 4 58889988754 34444454555677899999988776543 3 5788888766543 34333 45677889999
Q ss_pred CCCEEEEEeCCC---eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC
Q 014114 312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 312 ~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d 366 (430)
++++|+.++.++ .|.+||+.++.... +... . ......|+|||.. +....+
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~---l~~~-~-~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGERV---LTDT-G-LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeEE---ccCC-C-CCCCceECCCCCEEEEEEeC
Confidence 999998888776 79999998765432 2111 1 1245689999988 554443
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=3.9e-11 Score=100.86 Aligned_cols=256 Identities=12% Similarity=0.124 Sum_probs=166.6
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc------------CCceEEEEEc
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA------------SGTIAFSKVD 171 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~------------~~~i~~~~~~ 171 (430)
+-+.++.+.. .+.+|++|..+|.+.++.-+..... .. .....-..| ...|..+.|.
T Consensus 26 diis~vef~~--------~Ge~LatGdkgGRVv~f~r~~~~~~---ey-~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 26 DIISAVEFDH--------YGERLATGDKGGRVVLFEREKLYKG---EY-NFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred cceeeEEeec--------ccceEeecCCCCeEEEeeccccccc---ce-eeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 3455666655 3449999999999998865433220 00 111111111 2457888888
Q ss_pred CCC--CEEEEecCCCeEEEEECCCCceee--------------------eecCC-------CCCCCCcccCcceeEeEEe
Q 014114 172 ISE--KFSLFGGKGVEVNVWDLDKCEKIW--------------------TAKPP-------PKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 172 ~~~--~~l~~~~~dg~v~iwd~~~~~~~~--------------------~~~~~-------~~~~~~~~~~~~v~~~~~~ 222 (430)
+++ ..++..+.|.+|++|.+.....-. .+..+ ....+.-.|+-.|+++.+
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~- 172 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV- 172 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee-
Confidence 754 467778899999999886422110 11111 112233345667899999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCcceEE--eeecC-----CCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeE--
Q 014114 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRE-----TPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-- 292 (430)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~-----~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~-- 292 (430)
+.|...++++ .|-.|.+|++.-..+.... ++.+. .-|++..|+|.. +.++-.+..|+|++-|++...+
T Consensus 173 -NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 173 -NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred -cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 7788888875 6789999998754433333 23332 368889999954 6778888999999999985321
Q ss_pred ----EeEE----------eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeeEEeecccc----------ce
Q 014114 293 ----LGCF----------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI-KTRQLLSAVFLKQHL----------NE 347 (430)
Q Consensus 293 ----~~~~----------~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~----------~~ 347 (430)
+... .. --..|..+.|+++|+++++-.. -+|++||+ ...+++.+..+.... ++
T Consensus 251 ~hsKlfEepedp~~rsffse-iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSE-IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred chhhhhccccCCcchhhHHH-HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1111 11 1357899999999999998754 57999999 456666664433211 11
Q ss_pred e--EEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 348 V--VFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 348 ~--i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+ -..++|+.++.+ +||+..+.+++|+...
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 1 267899999999 9999999999999543
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=8.3e-09 Score=91.47 Aligned_cols=289 Identities=16% Similarity=0.083 Sum_probs=161.1
Q ss_pred CCCCCcceEeecCC-----CcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc----------C
Q 014114 10 PGCPPLRALTFDSL-----GLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK----------N 74 (430)
Q Consensus 10 ~~~p~~~l~t~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~----------d 74 (430)
|..++.+++.-+.. |.|.+.|..+. +++..+.....+.. + . +|||+.|+++.. +
T Consensus 8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~-~---~--spDg~~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 8 PASDARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNP-V---V--ASDGSFFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCCCCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCce-e---E--CCCCCEEEEEeccccccccCCCC
Confidence 44455566666654 89999999885 55555554333321 1 3 677888877655 7
Q ss_pred CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc-c-CCeeEEEEeeeecccccCCcc
Q 014114 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCS 152 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~i~v~~~~~~~~~~~~~~~ 152 (430)
..|.+||..+++.+..+..-....+. .......+.+.+.. ..++... . +..+.|.|++....
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~~~ls~dg--------k~l~V~n~~p~~~V~VvD~~~~kv------- 140 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWMTSLTPDN--------KTLLFYQFSPSPAVGVVDLEGKAF------- 140 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhh-ccCccceEEECCCC--------CEEEEecCCCCCEEEEEECCCCcE-------
Confidence 89999999999999888652110000 00111123333322 2343332 2 55666666554321
Q ss_pred eeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-Ccee-eeecCCCCCCCCcccCcceeEeEEeeCCCCCEE
Q 014114 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
+....+ .++..-+..+.+..++ -+.||......+.+ ++.. ....-.......++ ..+ .|. ..++.++
T Consensus 141 -v~ei~v--p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~-~rP----~~~-~~dg~~~ 209 (352)
T TIGR02658 141 -VRMMDV--PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI-NHP----AYS-NKSGRLV 209 (352)
T ss_pred -EEEEeC--CCCcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccc-cCC----ceE-cCCCcEE
Confidence 111111 1221222222222111 12344433333322 2211 01000000000000 011 231 3377777
Q ss_pred EEEeCCCcEEEEECCCCC----cceEEeee-------cCCCeEEEEeeCCCCEEEEEc----------CCCCEEEEEccC
Q 014114 231 VAGTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGN----------GSGDLASVDIRT 289 (430)
Q Consensus 231 ~~~~~dg~i~~wd~~~~~----~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~ 289 (430)
.+... |.|.+.|+.... .+...+.. ....+.-++++|+++.+++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77665 999999965422 11222211 223444599999999888853 124799999999
Q ss_pred CeEEeEEeccccCcEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeEE
Q 014114 290 GKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~-~d~~v~iwd~~~~~~~~~~ 339 (430)
++.+..+.. ...+..|+++||++ +|++.. .++.|.++|..+++.+..+
T Consensus 289 ~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999886 46899999999999 877666 6788999999999999985
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=6e-10 Score=99.74 Aligned_cols=306 Identities=15% Similarity=0.136 Sum_probs=184.0
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEE-----EccC-----CeEEEeccC
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAV-----ARKN-----GLTDILNPL 83 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~-----g~~d-----g~i~iwd~~ 83 (430)
..++.+-..++.++|++.... ..+.+.. ... +..+-+ +|-|.||.+ ...+ -.+.+|++.
T Consensus 45 ~G~lfA~~~~~~v~i~~~~~~-----~~~lt~~--~~~--~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 45 NGRLFAYSDNQVVKVFEIATL-----KVVLCVE--LKK--TYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred CCcEEEEEcCCeEEEEEccCC-----cEEEEec--cce--eeeeee--cccccccccccccccccCCCCCCCceeeeeec
Confidence 467777777788888888764 2222211 112 445555 777888876 1222 237799988
Q ss_pred CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC
Q 014114 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
++.....+..-... +. +..|. .+..+++-...+.+.+|++.... ..... -+..
T Consensus 114 t~~~~s~~q~k~Q~------~W--~~qfs---------~dEsl~arlv~nev~f~~~~~f~-------~~~~k---l~~~ 166 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQN------GW--VPQFS---------IDESLAARLVSNEVQFYDLGSFK-------TIQHK---LSVS 166 (566)
T ss_pred cceehhheehhhhc------Cc--ccccc---------cchhhhhhhhcceEEEEecCCcc-------ceeee---eecc
Confidence 85554444331100 01 12221 22345555556778888765411 11111 2356
Q ss_pred ceEEEEEcCCC--CEEEE-----ecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEE--
Q 014114 164 TIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAG-- 233 (430)
Q Consensus 164 ~i~~~~~~~~~--~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~-- 233 (430)
.|..+.++|.+ ..+++ .+.-..|++|.......-..+... ..+..+ -..+.| ++.+. +|+.+
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k-----sFFkad-kvqm~W--N~~gt~LLvLast 238 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK-----SFFKAD-KVQMKW--NKLGTALLVLAST 238 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc-----cccccc-eeEEEe--ccCCceEEEEEEE
Confidence 78888888853 34443 355567999987632111111000 000001 123445 44443 22222
Q ss_pred eC---------CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEE--EcCCCCEEEEEccCCeEEeEEeccccC
Q 014114 234 TN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 234 ~~---------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
.- ..+++++++.. ......+. ..++|.++.|+|+++.+++ |..-..+.|||++ +.++..+. .+
T Consensus 239 dVDktn~SYYGEq~Lyll~t~g-~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---eg 312 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQG-ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EG 312 (566)
T ss_pred eecCCCccccccceEEEEEecC-ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CC
Confidence 22 23688888873 33233333 3689999999999977655 5577889999994 77777764 56
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC------CCcEEEe
Q 014114 303 SIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD------APMLEIQ 372 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~------d~~v~vw 372 (430)
+=+++-|+|.|++|+.++.+ |.|-|||+.+.+++..+ ... + .+-+.|+|||++ +|+.. |+.++||
T Consensus 313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~-~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAA-N--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc--ccC-C--ceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 78999999999999988854 78999999999999884 332 1 255799999999 66543 5778889
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
+...
T Consensus 388 hytG 391 (566)
T KOG2315|consen 388 HYTG 391 (566)
T ss_pred EecC
Confidence 9764
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=4.5e-12 Score=126.83 Aligned_cols=184 Identities=14% Similarity=0.179 Sum_probs=147.4
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecC
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 202 (430)
....++++.||.+++|..... ..+..|+......|+.+.|+.+|+.+..+..||.+.+|... .+.....+.
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred CceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc
Confidence 348999999999999985432 47888888777889999999999999999999999999987 455555566
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEe---CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
|. .......|. +..+++++ .++.+.+||..-....-.....|.+.++++++.|..++|++|+.+
T Consensus 2291 hn---------k~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2291 HN---------KALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CC---------ccccceeee----ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 54 446667774 35666654 578999999764322222338899999999999999999999999
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
|.|++||++..++++.+.. ++ ...++++++..|.++||++.....++.+
T Consensus 2358 G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999998888766654 44 5568999999999999999988877774
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=9.5e-10 Score=103.22 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=100.0
Q ss_pred EEEEEcCCCCEEEE-ecCC--CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-C--cE
Q 014114 166 AFSKVDISEKFSLF-GGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H--QV 239 (430)
Q Consensus 166 ~~~~~~~~~~~l~~-~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~i 239 (430)
.+++|+|+++.|+. .+.+ ..|++||+.++..... ..+. .......| +|+++.|+..+.. + .|
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~---------~~~~~~~~--s~dg~~l~~~s~~~g~~~i 304 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TNGP---------GIDTEPSW--SPDGKSIAFTSDRGGSPQI 304 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CCCC---------CCCCCEEE--CCCCCEEEEEECCCCCceE
Confidence 34578888876654 3433 3588999887654332 2221 12334577 7899988766543 3 58
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC---CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
+++|+.+++ ...+..+...+..+.|+|++++|+.++.++ .|.+||+.++... .+.. ........|+|++++|
T Consensus 305 y~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 305 YMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNGRMI 379 (417)
T ss_pred EEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC--CCCCCCceECCCCCEE
Confidence 888887654 344554556677889999999999888775 7889998875442 2322 1234556899999988
Q ss_pred EEEeCCC---eEEEEeCCCCceeeE
Q 014114 317 ASCGLDS---YLRFWDIKTRQLLSA 338 (430)
Q Consensus 317 ~s~~~d~---~v~iwd~~~~~~~~~ 338 (430)
+..+.++ .+++.+. +++....
T Consensus 380 ~~~~~~~~~~~l~~~~~-~g~~~~~ 403 (417)
T TIGR02800 380 LYATTRGGRGVLGLVST-DGRFRAR 403 (417)
T ss_pred EEEEeCCCcEEEEEEEC-CCceeeE
Confidence 8777554 4555554 3444444
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=3.2e-10 Score=95.48 Aligned_cols=231 Identities=11% Similarity=0.153 Sum_probs=145.5
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC-ceeeeeeec
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~ 94 (430)
-+++.+.|.++|||--......-+. + .|..+..+.++++ .++...|++|-.+|++.-+.+... ......+.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wps-I----~~~mP~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~- 109 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPS-I----YHYMPSPCSAMEY--VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD- 109 (404)
T ss_pred CeEEccccceeeeEEeccccccCch-h----hhhCCCCceEeee--eccceEEEEEEecceEEEEEhhhhhhhcchhhh-
Confidence 4689999999999965542111111 1 1333444666666 556678999999999988876421 11111111
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+...+..+.+..... .+++++.|..+.--..++.. .+--|.... ...++.+.-
T Consensus 110 ----~~~h~~~v~~~if~~~~e--------~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 110 ----YLAHQARVSAIVFSLTHE--------WVLSTGKDKQFAWHCTESGN--------RLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred ----hhhhhcceeeEEecCCce--------eEEEeccccceEEEeeccCC--------cccceEeec--cCCCCceee--
Confidence 112334555444444333 67777776554333222221 111121111 111111111
Q ss_pred CEEEEecCCCeEEEEEC--CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 175 KFSLFGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
.+.+.|...|.|.+-.+ .....+..+.+|. ..+.++.| .+....|.+|..|..+.+||+-..+-...
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~W--d~~~~~LfSg~~d~~vi~wdigg~~g~~~ 234 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKW--DPGQRLLFSGASDHSVIMWDIGGRKGTAY 234 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEE--cCCCcEEEeccccCceEEEeccCCcceee
Confidence 15556666676665544 3456677777765 77999999 78889999999999999999986555567
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 289 (430)
.+.+|...|..+...+.-+.+++++.||.|.+||++.
T Consensus 235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 7888999999999888888999999999999999863
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.4e-10 Score=106.39 Aligned_cols=194 Identities=10% Similarity=0.003 Sum_probs=125.7
Q ss_pred cCCceEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND 236 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d 236 (430)
+...+....|+|+++.|+..+.+ ..|.+||+.+++...... .. ..+....| +|+++.|+. ...+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~---------g~~~~~~~--SpDG~~la~~~~~~ 264 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FE---------GLNGAPAW--SPDGSKLAFVLSKD 264 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CC---------CCcCCeEE--CCCCCEEEEEEccC
Confidence 45678899999999998776543 369999998876543221 11 22445778 899998874 4444
Q ss_pred C--cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CC--CEEEEEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g--~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
+ .|++||+.++. ...+..+........|+|||+.|+..+. ++ .|+++|+.+++... +... ........|+|
T Consensus 265 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Sp 340 (430)
T PRK00178 265 GNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSA 340 (430)
T ss_pred CCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECC
Confidence 4 68888998754 3445555556677899999998876653 33 47777887776432 2221 22344578999
Q ss_pred CCCEEEEEeCC-C--eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeec-CCCc--EEEecCC
Q 014114 312 TLPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPM--LEIQNGN 375 (430)
Q Consensus 312 ~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~-~d~~--v~vw~~~ 375 (430)
+|++|+..+.+ + .|.+||+.+++... +. ... . .....|+|||+. +..+ .++. |.+++.+
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~--~-~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTS--L-DESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCC--C-CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 99998877643 3 58899998876533 21 111 1 135589999999 4433 3333 4555543
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=2e-11 Score=122.37 Aligned_cols=187 Identities=14% Similarity=0.182 Sum_probs=151.9
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
-..|.++.-+|...+.++|+.||.|++|....++.+..++... +..|+.+.| +..|+.+..+..||.+.+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------~s~vtr~~f--~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------NSRVTRSRF--NHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------cchhhhhhh--cccCCceeeeccCCceee
Confidence 3567888889999999999999999999999998887776543 256888889 778999999999999999
Q ss_pred EECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc---CCCCEEEEEccCCe---EEeEEeccccCcEEEEEEcCCCCE
Q 014114 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGK---LLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~i~~s~~~~~ 315 (430)
|... .++....+.|+.....+.|-. ..+++++ .++.+.+||.--.. ++. ..| .+.++++++.|.-++
T Consensus 2278 ~q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2278 WQAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAPKHQL 2350 (2439)
T ss_pred cccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcCcceE
Confidence 9998 346888888999988888864 4666654 45789999975322 333 566 899999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 316 IASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 316 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
|++|+.+|.|++||++..++.+.+. . +.....+++++..|.++||+...-
T Consensus 2351 lisggr~G~v~l~D~rqrql~h~~~--~----------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQ--A----------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEecCCcCcEEEeehHHHHHHHHhh--h----------hhhhheeeccCcccceEEEEcccc
Confidence 9999999999999999988887632 1 332333489999999999998763
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.1e-09 Score=98.01 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE--EeCCCcEEEEECCCCCcceEEeeecCCC
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 260 (430)
..+++++++....+...+... ++|.++.| +|++..|++ |-.-..+.+||++. . ++. ...+++
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~----------GPVhdv~W--~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~--df~egp 313 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKE----------GPVHDVTW--SPSGREFAVVYGFMPAKVTIFNLRG-K-PVF--DFPEGP 313 (566)
T ss_pred cceEEEEEecCceEEEecCCC----------CCceEEEE--CCCCCEEEEEEecccceEEEEcCCC-C-EeE--eCCCCC
Confidence 346888888744444444332 77999999 788876554 55678899999985 2 343 444578
Q ss_pred eEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC------CCeEEEEeCC
Q 014114 261 IKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIK 331 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~------d~~v~iwd~~ 331 (430)
-.++-|+|.|++|+.++-+ |.|.|||+.+.+++..+... .-+-+.|+|||++|+|+.. |+.++||+.
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy- 389 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY- 389 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-
Confidence 8899999999999887754 78999999998899888764 3455699999999998863 678999997
Q ss_pred CCceeeEEeeccccceeEEEeeecC
Q 014114 332 TRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
+|..++.-.++. .++.+.|-|
T Consensus 390 tG~~l~~~~f~s----EL~qv~W~P 410 (566)
T KOG2315|consen 390 TGSLLHEKMFKS----ELLQVEWRP 410 (566)
T ss_pred cCceeehhhhhH----hHhheeeee
Confidence 466666532222 246777765
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.2e-10 Score=104.33 Aligned_cols=193 Identities=11% Similarity=0.053 Sum_probs=122.7
Q ss_pred CCceEEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCCC
Q 014114 162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH 237 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg 237 (430)
...+.+..|+|+++.|+..+.+ ..|++||+.+++....... . .......| +|+++.|+. .+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~---------g~~~~~~w--SPDG~~La~~~~~~g 284 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P---------GINGAPRF--SPDGKKLALVLSKDG 284 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C---------CCcCCeeE--CCCCCEEEEEEeCCC
Confidence 4577889999999988876432 3599999988765322111 1 12345678 899998765 45566
Q ss_pred c--EEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CC--CEEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 238 ~--i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
. |+++|+.+++ ...+..+.......+|+|||+.|+..+. ++ .|.++|+.+++... +... .......+|+||
T Consensus 285 ~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpD 360 (448)
T PRK04792 285 QPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPD 360 (448)
T ss_pred CeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCC
Confidence 4 7788887754 4455555556678899999998876653 33 46667887776433 2211 223455789999
Q ss_pred CCEEEEEeC-CC--eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e-eecCCCc--EEEecCC
Q 014114 313 LPIIASCGL-DS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N-AAADAPM--LEIQNGN 375 (430)
Q Consensus 313 ~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~-~~~~d~~--v~vw~~~ 375 (430)
|++|+..+. ++ .|.++|+.+++... + .... ......|+|||+. + +...++. +.+++.+
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~-l-t~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQV-L-TSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEE-c-cCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 998877654 33 46667888776532 2 1111 1234589999998 3 3444444 5555543
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=2.9e-09 Score=98.35 Aligned_cols=261 Identities=14% Similarity=0.095 Sum_probs=158.7
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeee
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
....+++.++.+|.+..+|..++ +++-..... .. +.+ .+ .-.+..++.+..+|.|..||..+|+.+..+
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG-----~~~W~~~~~-~~--~~~-~p--~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDG-----KELWRAKLS-SE--VLS-PP--LVANGLVVVRTNDGRLTALDAATGERLWTY 171 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCC-----cEeeeeccC-ce--eec-CC--EEECCEEEEECCCCeEEEEEcCCCceeeEE
Confidence 33467888999999999999775 333222211 11 111 01 002346788888999999999999988877
Q ss_pred eecCCCC-CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCc------
Q 014114 92 SNAGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT------ 164 (430)
Q Consensus 92 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~------ 164 (430)
....+.. ......++ . .++.++.+..+|.+..+++.... .+|.......
T Consensus 172 ~~~~~~~~~~~~~sp~----~----------~~~~v~~~~~~g~v~ald~~tG~----------~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 172 SRVTPALTLRGSASPV----I----------ADGGVLVGFAGGKLVALDLQTGQ----------PLWEQRVALPKGRTEL 227 (377)
T ss_pred ccCCCceeecCCCCCE----E----------ECCEEEEECCCCEEEEEEccCCC----------EeeeeccccCCCCCch
Confidence 5522110 00000111 1 11367777778888777765432 1232211000
Q ss_pred --eEEEEEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 165 --IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 165 --i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
+..+.-+| .+..+++++.+|.++.||..+++.++...... ...... .+..+++++.+|.|+
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----------~~~p~~----~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----------YQGPAV----DDNRLYVTDADGVVV 292 (377)
T ss_pred hhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----------ccCceE----eCCEEEEECCCCeEE
Confidence 00011111 35678888889999999999999988765211 112222 456788888999999
Q ss_pred EEECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE-EEEEcCCCCEEEE
Q 014114 241 LYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIAS 318 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~i~~s~~~~~l~s 318 (430)
.+|..+++. +..... ......+... .+..|++++.+|.|+++|..+++.+..+..+ ...+. +..+. + ..|+.
T Consensus 293 ~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~-~~~~~~sp~~~-~-~~l~v 366 (377)
T TIGR03300 293 ALDRRSGSE-LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD-GSGIASPPVVV-G-DGLLV 366 (377)
T ss_pred EEECCCCcE-EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCccccCCEEE-C-CEEEE
Confidence 999988763 433321 1112222222 3568999999999999999999999988865 43332 22332 3 35888
Q ss_pred EeCCCeEEEE
Q 014114 319 CGLDSYLRFW 328 (430)
Q Consensus 319 ~~~d~~v~iw 328 (430)
++.||.|+.|
T Consensus 367 ~~~dG~l~~~ 376 (377)
T TIGR03300 367 QTRDGDLYAF 376 (377)
T ss_pred EeCCceEEEe
Confidence 8899998876
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.5e-09 Score=100.62 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=102.8
Q ss_pred EEEEcCCCCEEEE-ecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CC--cEE
Q 014114 167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~ 240 (430)
...|+|+++.|+. ...++ .|++||+.+++... +..+. .......| +|+++.|+..+. ++ .|+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~--spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFW--GKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEE--CCCCCEEEEEECCCCCceEE
Confidence 4678888887764 33444 68888998876533 32221 22345678 899998776654 33 577
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-C--CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
++|+.+++ ...+...........|+|+|++|+..+.+ + .|.+||+.+++.. .+.. ........|+|+|++++
T Consensus 315 ~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 315 KVNVNGGR--AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLI 389 (430)
T ss_pred EEECCCCC--EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEE
Confidence 77887655 22232222334567899999999877643 3 4888999877643 2222 12223568999999887
Q ss_pred EEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 318 SCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
..+.+ ..++++++. +..... +..+ ...+...+|+|
T Consensus 390 ~~~~~~g~~~l~~~~~~-g~~~~~--l~~~-~g~~~~p~ws~ 427 (430)
T PRK00178 390 YATRQQGRGVLMLVSIN-GRVRLP--LPTA-QGEVREPSWSP 427 (430)
T ss_pred EEEecCCceEEEEEECC-CCceEE--CcCC-CCCcCCCccCC
Confidence 76643 347777774 333333 2222 22345667776
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=1.2e-08 Score=90.64 Aligned_cols=309 Identities=10% Similarity=0.022 Sum_probs=185.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCe---------------EEE
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGL---------------TDI 79 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~---------------i~i 79 (430)
.+.+....--.|.+|.-... ..+..+. |.. +--+.+ +|.++||.+=...+. +.+
T Consensus 44 G~~l~~~~~~~V~~~~g~~~-----~~l~~~~-~~~---V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 44 GTYLFSEHAAGVECWGGPSK-----AKLVRFR-HPD---VKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred chheehhhccceEEccccch-----hheeeee-cCC---ceeccc--CcccceeeeeccCCccChhhccCCccccCceeE
Confidence 34444444455888877653 2233332 322 333444 788999998554443 999
Q ss_pred eccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee
Q 014114 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV 159 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~ 159 (430)
||..+|..+..+....... ..-++ +.|.... .+++--..+.+.|+.+... .. ........
T Consensus 113 wd~~sg~iv~sf~~~~q~~---~~Wp~--~k~s~~D---------~y~ARvv~~sl~i~e~t~n--~~---~~p~~~lr- 172 (561)
T COG5354 113 WDIASGMIVFSFNGISQPY---LGWPV--LKFSIDD---------KYVARVVGSSLYIHEITDN--IE---EHPFKNLR- 172 (561)
T ss_pred EeccCceeEeeccccCCcc---cccce--eeeeecc---------hhhhhhccCeEEEEecCCc--cc---cCchhhcc-
Confidence 9999999998887743110 00012 2222211 2333335567888876211 11 11111111
Q ss_pred ccCCceEEEEEcCCC--CEEEE-----ecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE
Q 014114 160 CASGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~--~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (430)
...|....|+|.+ ..|+. .+..+.+++|.+..+..+.+..-.. ..-..+.| .+.+++|++
T Consensus 173 --~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk---------~~~~qLkW--~~~g~~ll~ 239 (561)
T COG5354 173 --PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK---------VSGVQLKW--QVLGKYLLV 239 (561)
T ss_pred --ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe---------ecccEEEE--ecCCceEEE
Confidence 3567788888853 33443 4567889999998666554332211 01123444 566665543
Q ss_pred Ee-----------CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE--cCCCCEEEEEccCCeEEeEEecc
Q 014114 233 GT-----------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG--NGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 233 ~~-----------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
-. ....++|+++.... +.....-.++|..++|.|.++.+++. -.+..+.++|++.. ..+.+.
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~e~~--i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-- 314 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRITERS--IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-- 314 (561)
T ss_pred EEEEeeecccceeccceEEEEeecccc--cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--
Confidence 21 13467888887533 33332456899999999998777654 47788999999765 444443
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee------cCCCcE
Q 014114 300 CSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA------ADAPML 369 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~------~~d~~v 369 (430)
.+.=+.+.|+|.+++++.++.| |.+-+||......+..- +.+.. ..-+.|+|||++ .+. -.|..+
T Consensus 315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~-~~~~n---~s~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA-FNGLN---TSYCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred -CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE-eecCC---ceEeeccCCceEEEecCCCcccccCcce
Confidence 4556778999999999998866 57999998766555421 33331 345689999999 443 246789
Q ss_pred EEecCCCC
Q 014114 370 EIQNGNDT 377 (430)
Q Consensus 370 ~vw~~~~~ 377 (430)
.+|+....
T Consensus 390 ~l~~v~g~ 397 (561)
T COG5354 390 KLWDVYGA 397 (561)
T ss_pred EEEEecCc
Confidence 99997653
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=2.5e-09 Score=87.16 Aligned_cols=218 Identities=9% Similarity=-0.001 Sum_probs=142.7
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE-EcCCCCEEEEecCCCeEEEEECCCCceeeeecC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK-VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 202 (430)
.+|+.++..|...+|++.... +.+++-+.. ...|.-+. .....-.+..++.|.++++.++..+..-..+..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~-------~h~~~cd~s-nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~ 156 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND-------GHLYQCDVS-NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN 156 (344)
T ss_pred cEEEeccccceeeeecccCcc-------cceeeeccc-ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence 488889999999999876433 233333322 11111111 011223455678888888888765433332222
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE--eeecCCCeEEEEeeCCCCEEEEEcCCC
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg 280 (430)
.. -.+.++.+ +++++++++.+....|..|.+......+.. ....+..-.+.+|+.....+|+++.||
T Consensus 157 ~~---------~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg 225 (344)
T KOG4532|consen 157 QN---------LTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDG 225 (344)
T ss_pred cc---------cceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCC
Confidence 21 22677888 899999999999999999998764332322 222344567888999999999999999
Q ss_pred CEEEEEccCCeEE----eEEeccccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeEEeecc-----ccceeE
Q 014114 281 DLASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAVFLKQ-----HLNEVV 349 (430)
Q Consensus 281 ~v~iwd~~~~~~~----~~~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~i 349 (430)
++.|||++..... ..-+.||.+.++.+.|++-|. +|...-.=+.+.+.|+++++..+.+.... |...-+
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i 305 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI 305 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence 9999999865432 223455699999999998764 45555556789999999998877653221 212225
Q ss_pred EEeeecCCcce
Q 014114 350 FDSAFADKEVA 360 (430)
Q Consensus 350 ~~~~~s~~g~~ 360 (430)
+...|+.++..
T Consensus 306 fgt~f~~~n~s 316 (344)
T KOG4532|consen 306 FGTNFNNENES 316 (344)
T ss_pred ccccccCCCcc
Confidence 66666666655
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.29 E-value=7.1e-08 Score=85.62 Aligned_cols=259 Identities=12% Similarity=0.068 Sum_probs=154.1
Q ss_pred CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc---------cCCeeEEEEeeeecc
Q 014114 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------TKGKASMRSIEVTKV 145 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~i~v~~~~~~~~ 145 (430)
++|.+.|..+++.+..+..-. .| ..+ +.+..+ ...++.+ .++.+.+||......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~----~P-----~~~-~spDg~-------~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF----LP-----NPV-VASDGS-------FFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC----CC-----cee-ECCCCC-------EEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 899999999999888886511 11 112 222211 1334444 688899999876442
Q ss_pred cccCCcceeeEEeec------cCCceEEEEEcCCCCEEEEec-C-CCeEEEEECCCCceeeeecCCCCCCCCcccCccee
Q 014114 146 SAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGG-K-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
. .-.... .......++++|++++|++.. . ++.|.+.|+.+++.+.++..... .
T Consensus 90 ~--------~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~----------~- 150 (352)
T TIGR02658 90 I--------ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC----------Y- 150 (352)
T ss_pred E--------eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC----------c-
Confidence 1 111111 122344789999999999765 3 68999999999999988875321 1
Q ss_pred EeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-ceEE---eeecCCCeE-EEEeeC-CCCEEEEEcCCCCEEEEEccCC-
Q 014114 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMS---FDFRETPIK-AVAEEP-DSFNIYIGNGSGDLASVDIRTG- 290 (430)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~---~~~~~~~i~-~~~~s~-~~~~l~~~~~dg~v~iwd~~~~- 290 (430)
..|. ..+...+ +-+.||......+....+ .... +.....++. .-.|.+ +|+++++... |.|.+.|+...
T Consensus 151 -~vy~-t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 151 -HIFP-TANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred -EEEE-ecCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 1111 1122222 223455444433332111 0111 111000100 003455 8888888776 99999996432
Q ss_pred ----eEEeEEecc------ccCcEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeEEeeccccceeEE
Q 014114 291 ----KLLGCFIGK------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 291 ----~~~~~~~~~------~~~~v~~i~~s~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~i~ 350 (430)
+.+..+... ..+.+.-++++|+++.++.... .+.|.++|..+++.+..+.+. ..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~ 302 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEID 302 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----Ccee
Confidence 223222111 1334445999999988877431 257999999999999986432 2368
Q ss_pred EeeecCCcc-e--eeecCCCcEEEecCCCC
Q 014114 351 DSAFADKEV-A--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 351 ~~~~s~~g~-~--~~~~~d~~v~vw~~~~~ 377 (430)
.++++|||+ + ++...++.|.++|....
T Consensus 303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 303 SINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred eEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 999999999 5 34446788999997664
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.7e-09 Score=93.47 Aligned_cols=297 Identities=10% Similarity=0.053 Sum_probs=180.7
Q ss_pred EEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc-----------CCeEEEeccCCCceeeeeeec
Q 014114 26 IKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 26 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~ 94 (430)
|.+|--..- ..++.|. |++ +..+ .| +|..+||++=+. ...|+|||+.+|.....+...
T Consensus 233 I~lWGG~~f-----~r~~RF~-Hp~-Vq~i--df--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~ 301 (698)
T KOG2314|consen 233 IALWGGESF-----DRIQRFY-HPG-VQFI--DF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI 301 (698)
T ss_pred eeeecCccH-----HHHHhcc-CCC-ceee--ec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc
Confidence 667744431 3455554 433 2233 33 667789998331 256999999999998888763
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec--cCCceEEEEEcC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDI 172 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~ 172 (430)
... ..+-.+.-|+ .+..+++.-....|.||.... ..+++.. .-..|..+.|+|
T Consensus 302 ~~~------~~~WP~frWS--------~DdKy~Arm~~~sisIyEtps-----------f~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 302 KSP------YLKWPIFRWS--------HDDKYFARMTGNSISIYETPS-----------FMLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred CCC------ccccceEEec--------cCCceeEEeccceEEEEecCc-----------eeeecccccCCccccCcccCC
Confidence 210 1111222233 223555555557788887432 2222211 124578889999
Q ss_pred CCCEEEEecC-----CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe----------CCC
Q 014114 173 SEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----------NDH 237 (430)
Q Consensus 173 ~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg 237 (430)
.+++||.-.. -..+.+..+.+++.+++...++ |..+..+...+|.+|+.-- .-.
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-----------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-----------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecCccceeeecccee-----------eeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 9988885432 2346777777777776655443 4444433366777776432 122
Q ss_pred cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccC----CeEEeEEeccccCcEEEEEEc
Q 014114 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRT----GKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~----~~~~~~~~~~~~~~v~~i~~s 310 (430)
.+.|+.++...-|+..... ...|...+|-|.|..+++-+.. .++.+|-+.+ .+++..+.. ...+.+.|+
T Consensus 426 n~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfws 501 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWS 501 (698)
T ss_pred eEEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEc
Confidence 4567777765555655554 4688999999999887765433 5688898873 223444433 457889999
Q ss_pred CCCCEEEEEe---CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC------CCcEEEecCCC
Q 014114 311 PTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD------APMLEIQNGND 376 (430)
Q Consensus 311 ~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~------d~~v~vw~~~~ 376 (430)
|.|++++.+. ..|.+.++|+....+... ....|.. .+.+.|.|.|++ ++++. |..-++|+...
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~-~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDT-ASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchhhhhhc-cCccccc--cccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 9999988764 568899999874222222 1223422 378899999999 55543 34456666544
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.6e-09 Score=100.17 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=102.5
Q ss_pred EEEEcCCCCEEEE-ecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CC--cEE
Q 014114 167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~ 240 (430)
..+|+|+++.|+. ...++ .|+++|+.+++... +..+. .......| +|+++.|+..+. ++ .|+
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~w--SpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSW--HPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCCEEEEEECCCCCceEE
Confidence 4578888887764 44455 48888988776433 22221 22455678 899998876654 33 567
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-C--CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
++|+.+++ ...+..+.......+|+|||++|+..+.+ + .|.++|+.+++.. .+... .......|+|+|++|+
T Consensus 334 ~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 334 RVNLASGK--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVI 408 (448)
T ss_pred EEECCCCC--EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEE
Confidence 77877654 23333222334557899999998876543 3 3556788777643 23221 1223458999999877
Q ss_pred EEeCC-C--eEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 318 SCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 318 s~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
..+.+ + .+++++. +|..... +..+ ...+...+|+|
T Consensus 409 ~~~~~~g~~~l~~~~~-~G~~~~~--l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 409 YSTTYQGKQVLAAVSI-DGRFKAR--LPAG-QGEVKSPAWSP 446 (448)
T ss_pred EEEecCCceEEEEEEC-CCCceEE--CcCC-CCCcCCCccCC
Confidence 66543 3 3777786 4555555 3333 22346678876
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.26 E-value=4e-09 Score=86.04 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=151.6
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
.+||.|+.-|...+|...+.+....+-... ...|.-..-+.. ..-.+..++.|+++++..++....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~s-------nn~v~~~~r~cd-------~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVS-------NNDVTLVKRYCD-------LKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeeccc-------ccchhhhhhhcc-------cccceeeccCCcceeEEEEecCcc
Confidence 379999999999999997665433322211 111111111110 112677888999999998875432
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeee-cCCCCCCCCcccCcceeEeEEee
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTA-KPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.. .++.. .-.+.++++++++.++++.+....|..|.+... +.+..+ .... .+.-.+..|
T Consensus 151 ~~-------~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--------~D~gF~~S~-- 211 (344)
T KOG4532|consen 151 KF-------AVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT--------SDHGFYNSF-- 211 (344)
T ss_pred cc-------eeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc--------CCCceeeee--
Confidence 11 11111 123778899999999999999999999998653 322221 1111 133456677
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEe----eecCCCeEEEEeeCCC--CEEEEEcCCCCEEEEEccCCeEEeEEe
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF----DFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~~i~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~ 297 (430)
+.....+|++..||++.|||++....|.... ..|.++++.+.|++-| .+|+..-.-+.+.+.|+++++....+.
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 7788899999999999999999866544332 3478999999999866 355555566789999999886544332
Q ss_pred -------ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 298 -------GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 298 -------~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
.|....|....|+.++.-+.+.+++. +.=|++.+.
T Consensus 292 i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 292 IPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred cCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence 23234578888888777666665543 555665543
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2e-08 Score=93.45 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=110.3
Q ss_pred CceEEEEEcCCCCEEEEecC-----CCeEEEEECCCC---ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe
Q 014114 163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (430)
+.....+|+|+|+.|+..+. +-.+..|++..+ .......... .......| +|||+.|+..+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~w--SPDG~~Laf~s 299 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSF--SPDGTRLVFVS 299 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEE--CCCCCEEEEEE
Confidence 44556799999988886542 223444676643 2222221110 12345688 89999887765
Q ss_pred -CCCcEEEE--ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEEeccccCcEEEEE
Q 014114 235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIA 308 (430)
Q Consensus 235 -~dg~i~~w--d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~i~ 308 (430)
.+|...+| ++.........+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +... ...+....
T Consensus 300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~ 377 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPS 377 (428)
T ss_pred CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceE
Confidence 45654555 4432111234454455567889999999988876543 358999998887643 3322 34567899
Q ss_pred EcCCCCEEEEEeC---CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 309 RHPTLPIIASCGL---DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 309 ~s~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
|+|||+.|+..+. ...|+++|+.+++..... . . ...+...+|+|-.
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~-~-~g~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--I-G-SGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--c-C-CCcccCceecCCC
Confidence 9999998775443 357899999877754432 1 1 1223566888753
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=4.4e-09 Score=97.84 Aligned_cols=197 Identities=11% Similarity=-0.024 Sum_probs=119.7
Q ss_pred CceEEEEEcCCCCE---EEEecCC--CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-C
Q 014114 163 GTIAFSKVDISEKF---SLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~---l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d 236 (430)
..+.+-.|+|+|+. +++...+ ..|++.++..++........ .......| +|||+.|+..+. +
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~----------g~~~~p~w--SPDG~~Laf~s~~~ 252 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ----------GNQLMPTF--SPRKKLLAFISDRY 252 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----------CCccceEE--CCCCCEEEEEECCC
Confidence 44566799999874 2344444 35888898877543332211 22345678 899998887653 2
Q ss_pred C----cEEEEECCCC--CcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEE--EccC-CeEEeEEeccccCcEEE
Q 014114 237 H----QVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRT-GKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 237 g----~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iw--d~~~-~~~~~~~~~~~~~~v~~ 306 (430)
| .+.+|++..+ ..+......+.......+|+|||+.|+..+ .+|...|| ++.. +.....+..+ ...+..
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~ 331 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSC 331 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccc
Confidence 2 3444676642 222233322223456789999999887665 45655555 4432 2233444443 456778
Q ss_pred EEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e-eecC--CCcEEEecCCC
Q 014114 307 IARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N-AAAD--APMLEIQNGND 376 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~-~~~~--d~~v~vw~~~~ 376 (430)
..|+|||+.|+..+.+ ..|++||+.+++.... ... ...+....|+|||+. + +... ...|.+++...
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L---t~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL---TTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc---cCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999999988876543 4799999998876443 111 122467899999987 4 3333 34566666654
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=8.7e-07 Score=76.01 Aligned_cols=280 Identities=13% Similarity=0.080 Sum_probs=165.4
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccC---CeEEEeccCC--CceeeeeeecCCC
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKN---GLTDILNPLN--GDLRVAISNAGDS 97 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g~i~iwd~~~--~~~~~~~~~~~~~ 97 (430)
+.-|.+|++.+. .+.....+... .....+.+++ +|++++|.++-.+ |.|.-|.+.. |++...-....
T Consensus 15 s~gI~v~~ld~~-~g~l~~~~~v~-~~~nptyl~~----~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-- 86 (346)
T COG2706 15 SQGIYVFNLDTK-TGELSLLQLVA-ELGNPTYLAV----NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-- 86 (346)
T ss_pred CCceEEEEEeCc-ccccchhhhcc-ccCCCceEEE----CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--
Confidence 567999999962 33333333332 3344445665 4566788886544 7788877754 44322221111
Q ss_pred CCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC----------ceEE
Q 014114 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG----------TIAF 167 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~----------~i~~ 167 (430)
...+.+-+.+-.... -.+.+....|.+.|+-+...... ...+.+. .|.+ .+..
T Consensus 87 ----~g~~p~yvsvd~~g~-------~vf~AnY~~g~v~v~p~~~dG~l----~~~v~~~--~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 87 ----PGSPPCYVSVDEDGR-------FVFVANYHSGSVSVYPLQADGSL----QPVVQVV--KHTGSGPHERQESPHVHS 149 (346)
T ss_pred ----CCCCCeEEEECCCCC-------EEEEEEccCceEEEEEcccCCcc----ccceeee--ecCCCCCCccccCCccce
Confidence 111223333333222 13344456678888887543211 0111111 1222 2788
Q ss_pred EEEcCCCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECC
Q 014114 168 SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTS 245 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~ 245 (430)
..+.|++++|++... --.|.+|++..+.....-...- .....-..+.| +|++++..+.+ .+++|.+|...
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------~~G~GPRHi~F--Hpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------KPGAGPRHIVF--HPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------CCCCCcceEEE--cCCCcEEEEEeccCCEEEEEEEc
Confidence 999999999987643 2369999998765433222111 11245678999 89999876655 58999999988
Q ss_pred CCCcceEEeeec---------CCCeEEEEeeCCCCEEEEEcC-CCCEEEEEccC--CeE--EeEEeccccCcEEEEEEcC
Q 014114 246 AQRRPVMSFDFR---------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--GKL--LGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 246 ~~~~~~~~~~~~---------~~~i~~~~~s~~~~~l~~~~~-dg~v~iwd~~~--~~~--~~~~~~~~~~~v~~i~~s~ 311 (430)
.....+..++.+ ......|.++|||++|+++.. ...|.+|.+.. +++ +.....+ ....+...|++
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~ 300 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINP 300 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCC
Confidence 742223333322 346778899999999998753 24677776653 332 2222333 44578999999
Q ss_pred CCCEEEEEeCCC-eEEEEeCC--CCcee
Q 014114 312 TLPIIASCGLDS-YLRFWDIK--TRQLL 336 (430)
Q Consensus 312 ~~~~l~s~~~d~-~v~iwd~~--~~~~~ 336 (430)
.+++|+++..++ .|.+|.+. +|++-
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 999999998654 58888654 45543
No 269
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.20 E-value=3.5e-08 Score=91.53 Aligned_cols=314 Identities=12% Similarity=0.085 Sum_probs=181.1
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEE------eccCCCCCCceEEEEccCCeEEEeccCCCc
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLA------ASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
-..++++++.+|.+.-+|..++ +.+=+...... ..... ++..-.-++..|+.++.+|.+..+|..+|+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG-----~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTG-----KEIWSVDLSEK-DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCC-----cEeeEEcCCCc-ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCC
Confidence 3468888899999999998875 32211111110 00000 000001124468888899999999999999
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.+....... .+.+-... .++.++.+..+|.+..++..... .+|......+..
T Consensus 142 ~~W~~~~~~---------~~~ssP~v---------~~~~v~v~~~~g~l~ald~~tG~----------~~W~~~~~~~~~ 193 (394)
T PRK11138 142 VAWQTKVAG---------EALSRPVV---------SDGLVLVHTSNGMLQALNESDGA----------VKWTVNLDVPSL 193 (394)
T ss_pred CcccccCCC---------ceecCCEE---------ECCEEEEECCCCEEEEEEccCCC----------EeeeecCCCCcc
Confidence 988776521 11110011 12366777778887777765433 245443321111
Q ss_pred EE--EEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC-CCcccCcce-eEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 167 FS--KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 167 ~~--~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
.+ .-+| .+..++.++.+|.+..+|..+++.++......... ........+ ..... .+..++.++.+|.+.
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v----~~~~vy~~~~~g~l~ 269 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV----VGGVVYALAYNGNLV 269 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE----ECCEEEEEEcCCeEE
Confidence 00 0112 23456778889999999999999888764321100 000000000 11111 245677778899999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
.+|..+++. +..... .....+.. .+..|+.++.+|.+..+|..+++.+............+... .+..|+.++
T Consensus 270 ald~~tG~~-~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 270 ALDLRSGQI-VWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred EEECCCCCE-EEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence 999998764 333322 11122222 45578888899999999999998765443210111222222 245788889
Q ss_pred CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecC
Q 014114 321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 321 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~ 374 (430)
.||.|++.|..+|+.+....+.+ ........+ .++.++.++.+|.|..++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~--~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDS--SGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCC--CcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 99999999999999988754421 112122222 3566688899999988764
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.1e-09 Score=99.11 Aligned_cols=277 Identities=14% Similarity=0.113 Sum_probs=182.9
Q ss_pred cceEeecCCCcEEEEEecCcc-----CC-----cchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC
Q 014114 15 LRALTFDSLGLIKVIEARGED-----GG-----VPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
.-+++|+.||.++|-.+.+.. .+ ....-+++.+|.+++.++.+.- ..+.|-+...+|.|.||-+-.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe----~~QKLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE----NNQKLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc----ccccccccCCCceEEEEeeec
Confidence 568899999999999887522 11 2223467788999866666543 345688999999999999877
Q ss_pred CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC-C
Q 014114 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-G 163 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~-~ 163 (430)
|+-....-.- -...-|.++.|... +..+.....||.+.|=+++.. ++|.-... .
T Consensus 103 gsW~EEMiNn------RnKSvV~SmsWn~d--------G~kIcIvYeDGavIVGsvdGN-----------RIwgKeLkg~ 157 (1189)
T KOG2041|consen 103 GSWCEEMINN------RNKSVVVSMSWNLD--------GTKICIVYEDGAVIVGSVDGN-----------RIWGKELKGQ 157 (1189)
T ss_pred ccHHHHHhhC------cCccEEEEEEEcCC--------CcEEEEEEccCCEEEEeeccc-----------eecchhcchh
Confidence 7654433220 11124566666553 348889999999988776532 45553322 3
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-------eeeeecCCCCCCCCcccCcceeEeEEee------CCCCCEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDDHRKF 230 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~l 230 (430)
....+.|+++...++.+-.+|.+.+||....- +.....+.. . ..+..+..+.|.. .|+...|
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~---s--~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF---S--NFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee---c--CCCccccceeeccCccccCCCCCCEE
Confidence 35578899999999989999999999975421 111110000 0 0012234444431 4688899
Q ss_pred EEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---------CCEEEEEccCCeEEeEEecccc
Q 014114 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 231 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~ 301 (430)
+++..+|.+.+-.-.+...|+..-.+ ..+..+.|+++|..|++++.+ +.|++|.. -|+.+.+++.. .
T Consensus 233 avcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-g 308 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-G 308 (1189)
T ss_pred EEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC-C
Confidence 99999999988765554445443333 678899999999999998765 34666665 57888888887 7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
..|++++|-..|-.++.+ .|+.|++=++
T Consensus 309 ~~It~lsWEg~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 309 SCITGLSWEGTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred ceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence 889999997666555444 3444444433
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=2.3e-09 Score=90.47 Aligned_cols=254 Identities=10% Similarity=0.136 Sum_probs=171.0
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC-CCceeeeeeecCCCCCCCCCCceEEEEeeccCccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
.+...+.++...++...+-. -.+-+.+.+.|.+++||--. .++.-..+.. ....++.++.+.....
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~-- 81 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESR-- 81 (404)
T ss_pred hhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEEeccccccCchhhh-------hCCCCceEeeeeccce--
Confidence 44556666655543333222 22348999999999999432 3443333322 1223566666666544
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 198 (430)
.|+.+-.+|++.-+.++..-... ..++.|. .|...+..+-|+-....+++.+.|..+.-.-.+.+..+.
T Consensus 82 ------~L~vg~~ngtvtefs~sedfnkm----~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg 150 (404)
T KOG1409|consen 82 ------RLYVGQDNGTVTEFALSEDFNKM----TFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG 150 (404)
T ss_pred ------EEEEEEecceEEEEEhhhhhhhc----chhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence 89999999999888875432211 2344444 577889999999888999999999766544444444332
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC-CcceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
.+... .+.+++.| +-.+...|...|.|.+..+... -.++..+.+|...+.+++|.|....|.+|.
T Consensus 151 ~Y~~~----------~~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 151 GYNFE----------TPASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred ceEee----------ccCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence 22111 11222233 1115556666777766655432 235788999999999999999999999999
Q ss_pred CCCCEEEEEccCCe-EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 278 GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 278 ~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.|..+.+||+--.+ ....+.+| ...|..+...+.-+.+++++.||.|-+|+...
T Consensus 217 ~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999996544 34566677 88999998888889999999999999999753
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=1.2e-07 Score=97.35 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=150.7
Q ss_pred eEEEEccCCeeEEEEeeeeccc---c----cCCcceeeEEeeccCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCCce
Q 014114 125 TLLTCTTKGKASMRSIEVTKVS---A----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK 196 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~---~----~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~ 196 (430)
.+++-+.++.|.+++....... . +..++.. ....-.....++++++++.|+++. ..+.|+++|+.++..
T Consensus 582 lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~---~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V 658 (1057)
T PLN02919 582 LFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSF---EDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV 658 (1057)
T ss_pred EEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCch---hccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE
Confidence 6666677788888876432110 0 0011110 001112357889999888766654 456799999877653
Q ss_pred eeeecCCCCC--C-----CC-cccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeeec----------
Q 014114 197 IWTAKPPPKN--S-----LG-IFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---------- 257 (430)
Q Consensus 197 ~~~~~~~~~~--~-----~~-~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------- 257 (430)
.++.+.... . .. .........++| +| ++.++++...++.|++||..++. +..+.+.
T Consensus 659 -~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~ 733 (1057)
T PLN02919 659 -RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYERNLNGSS 733 (1057)
T ss_pred -EEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCccccCCCCc
Confidence 333211000 0 00 000123457888 67 56667777788999999987754 2222211
Q ss_pred -----CCCeEEEEeeCCCCEEE-EEcCCCCEEEEEccCCeEEeEEec-------------c-------ccCcEEEEEEcC
Q 014114 258 -----ETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIG-------------K-------CSGSIRSIARHP 311 (430)
Q Consensus 258 -----~~~i~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~-------------~-------~~~~v~~i~~s~ 311 (430)
-.....|+++|++..|+ +-+.++.|++||+.++.......+ . .-....++++++
T Consensus 734 ~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 12345799999998554 555678999999987653211100 0 011346899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeEEee-----------ccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFL-----------KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 312 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----------~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
+|.++++-..++.|++||..++........ .+... ....++++++|++ ++-+.++.|++|+.....
T Consensus 814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 999888888999999999987765533210 01111 2478899999998 888889999999987643
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=9.4e-07 Score=75.80 Aligned_cols=280 Identities=13% Similarity=0.071 Sum_probs=164.5
Q ss_pred CCeEEEeccCCCc-eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc---CCeeEEEEeeeecccccC
Q 014114 74 NGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAES 149 (430)
Q Consensus 74 dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~g~i~v~~~~~~~~~~~~ 149 (430)
+.-|.+|++.+.. .+...+... ......=+.+.+.++ .|.++-. .|.+..|.++..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~------~~~nptyl~~~~~~~--------~LY~v~~~~~~ggvaay~iD~~------ 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA------ELGNPTYLAVNPDQR--------HLYVVNEPGEEGGVAAYRIDPD------ 74 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc------ccCCCceEEECCCCC--------EEEEEEecCCcCcEEEEEEcCC------
Confidence 4569999986322 111111111 112333355555444 5555544 466666666532
Q ss_pred CcceeeEEeec--cCCceEEEEEcCCCCEEEEecC-CCeEEEEECCC-Ccee---eeecCCCCCCCCcccCcceeEeEEe
Q 014114 150 SCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDK-CEKI---WTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 150 ~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~-~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
++.+.+.+.. .+.+-..+++++++++|+++.+ .|.|.++-+.. |... ..+.........-.....+....|
T Consensus 75 -~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~- 152 (346)
T COG2706 75 -DGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF- 152 (346)
T ss_pred -CCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee-
Confidence 1344333322 2334478999999999998865 57899999865 3322 112111110000001133677788
Q ss_pred eCCCCCEEEEEeC-CCcEEEEECCCCCcce---EEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCC--e--EE
Q 014114 223 SIDDHRKFVAGTN-DHQVRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG--K--LL 293 (430)
Q Consensus 223 ~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~--~--~~ 293 (430)
.|++++|++... --.|.+|++..+.... ..+ .....-+.|.|+|++++.++.+ .+++|.+|..... + .+
T Consensus 153 -tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 153 -TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred -CCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 899999988763 3378999998654211 111 2235678999999999887766 6789999988763 2 22
Q ss_pred eEEecc-----ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC-ceeeEEeeccccceeEEEeeecCCcce-eeec-
Q 014114 294 GCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTR-QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA- 364 (430)
Q Consensus 294 ~~~~~~-----~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~- 364 (430)
+.+..- .......|..++||++|.++. ....|-+|.+... ..+..+......+.......|++.|++ +++.
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 222110 145677899999999998886 3347888876542 223322111111222478899999999 4444
Q ss_pred CCCcEEEecCCCC
Q 014114 365 DAPMLEIQNGNDT 377 (430)
Q Consensus 365 ~d~~v~vw~~~~~ 377 (430)
.+..|.+|..+..
T Consensus 311 ~sd~i~vf~~d~~ 323 (346)
T COG2706 311 KSDNITVFERDKE 323 (346)
T ss_pred CCCcEEEEEEcCC
Confidence 4567999988763
No 274
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=2.4e-10 Score=96.26 Aligned_cols=165 Identities=13% Similarity=0.167 Sum_probs=121.3
Q ss_pred EEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc---ceEEe
Q 014114 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSF 254 (430)
Q Consensus 178 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~ 254 (430)
++.+.+..|.+-|+.++....-. . ..-|.++.| ...++++..|+.+|.|..+|++...+ -....
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-s----------ksDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-S----------KSDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ecccccceeEEEEeecccccccc-c----------chhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 44566667888888876543222 1 145788888 45688999999999999999997411 12233
Q ss_pred eecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeE---EeEEeccccCcEEE--EEEcCCCCEEEEEeCCCeEEEE
Q 014114 255 DFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRS--IARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 255 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~--i~~s~~~~~l~s~~~d~~v~iw 328 (430)
-.|.+.|+++..-. ++++|++.+.+|.|.+||++.-++ +..+.+| ...-.- +...+....+++++.|...|||
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-cccccccccccccccceEEEccCeeEEEEE
Confidence 45888999988765 778999999999999999998777 8888888 322222 2344566788999999999999
Q ss_pred eCCCCceeeEEeeccccce-eEEEeeecC
Q 014114 329 DIKTRQLLSAVFLKQHLNE-VVFDSAFAD 356 (430)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~-~i~~~~~s~ 356 (430)
.+.+|.++.++.++..... .+.+++|..
T Consensus 374 sl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ecccCceeeccCCCCccccccccceehhc
Confidence 9999999998766554333 356677653
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=1.6e-07 Score=96.49 Aligned_cols=261 Identities=11% Similarity=0.042 Sum_probs=149.9
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCC------CCCCceEEEEeeccCccccccCCceEEEEccCCeeEE
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ------PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v 137 (430)
++.++++-..++.|.+||. +++.+..+.......+. .......++.+..... ..+++-..++.|++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-------~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-------LLYVADTENHALRE 650 (1057)
T ss_pred CCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-------EEEEEeCCCceEEE
Confidence 3456666777888999997 45554444321111110 0111233454433211 13444555677888
Q ss_pred EEeeeecccccCCccee-eEEee------ccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCC-----
Q 014114 138 RSIEVTKVSAESSCSTV-KSWNV------CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP----- 204 (430)
Q Consensus 138 ~~~~~~~~~~~~~~~~i-~~~~~------~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----- 204 (430)
+++.......-...+.. ..+.- ..-.....++++| ++.++++...++.|++||..++.... +.+..
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNL 729 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccC
Confidence 87643211000000000 00000 0012235789999 55566667778899999998765432 21110
Q ss_pred -CCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceEE------------eeec--------CCCeE
Q 014114 205 -KNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMS------------FDFR--------ETPIK 262 (430)
Q Consensus 205 -~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~------------~~~~--------~~~i~ 262 (430)
..............+++ +|++. ++++-+.++.|++||+.++...+.. +..+ -....
T Consensus 730 ~g~~~~~~~~~~P~GIav--spdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISL--SPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred CCCccccccccCccEEEE--eCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000001134567888 78887 4555567789999999875421110 0000 01235
Q ss_pred EEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc------------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 263 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
.++++++|+++++-..++.|++||..++......... .-.....|+++++|+++++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 8899999998888889999999999877654322110 0125788999999999898889999999999
Q ss_pred CCCce
Q 014114 331 KTRQL 335 (430)
Q Consensus 331 ~~~~~ 335 (430)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98765
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.3e-08 Score=94.04 Aligned_cols=287 Identities=12% Similarity=0.111 Sum_probs=182.4
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC-------CCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD-------SGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
.-..+| .....|+|+|+.||.++|..+.+...-...++... ....+|...|.-+.|..... .+
T Consensus 17 L~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--------KL 86 (1189)
T KOG2041|consen 17 LHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--------KL 86 (1189)
T ss_pred EEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--------cc
Confidence 444555 44567999999999999998865432222222110 11124556666555544333 77
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 206 (430)
-+...+|.|.||-+-...-.. .+.+-.....|.+++|+.+|..++....||.|.+=.+. |..++--....
T Consensus 87 TtSDt~GlIiVWmlykgsW~E-------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg-- 156 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCE-------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG-- 156 (1189)
T ss_pred cccCCCceEEEEeeecccHHH-------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch--
Confidence 788889999999764332100 00122334678999999999999999999998876654 33333211111
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc------ceEEee----ecCCCeEEEEee--------C
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFD----FRETPIKAVAEE--------P 268 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------~~~~~~----~~~~~i~~~~~s--------~ 268 (430)
.....+.| ++|...++.+-.+|.+++||....-. ...... .....|..+.|. |
T Consensus 157 -------~~l~hv~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 157 -------QLLAHVLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred -------heccceee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC
Confidence 22456778 88999888888999999999864210 111111 112235566663 4
Q ss_pred CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC---------eEEEEeCCCCceeeEE
Q 014114 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS---------YLRFWDIKTRQLLSAV 339 (430)
Q Consensus 269 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~---------~v~iwd~~~~~~~~~~ 339 (430)
+...|+++...|.+.|..-.+......+.. .-.|..+.|+++|.+|+.++.|. .|.+|.. -|+.+.++
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl 304 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL 304 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEE
Confidence 677899999999988875444333333333 46789999999999999998653 5666653 47777774
Q ss_pred eeccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 340 FLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 340 ~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
..+ +..|++++|-..|..++-.-|+.|.+=+..
T Consensus 305 kvp---g~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 305 KVP---GSCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred ecC---CceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 433 334799999888877666666666654443
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.14 E-value=9.5e-08 Score=79.32 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=132.7
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc--CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.++.+++...|..+.|......-. ..+....+.. ...-+-++|+|++.+||.+...|+|++||+.. ..++.
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~------si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFS------SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCch------heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 345677777777777765432211 1122222221 23467899999999999999999999999975 44445
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCC-----CCEEEEEeCCCcEEEEECCCC--C--cceEEeee---cCCCeEEEEee
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQ--R--RPVMSFDF---RETPIKAVAEE 267 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~~wd~~~~--~--~~~~~~~~---~~~~i~~~~~s 267 (430)
+......... ....|..+.|.. +. ...|++-...|.++-|-+..+ + +....+.. +...|.++.++
T Consensus 80 I~p~~~~~~d--~~~Aiagl~Fl~-~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPPAMSFPGD--LSDAIAGLIFLE-YKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred cCcccccCCc--cccceeeeEeec-cccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 5443211111 124567777752 22 235666678888887765321 1 12233332 35689999999
Q ss_pred CCCCEEEEEcCC-C----------CEEEEEccCCeEEe----------------------------EEeccccCcEEEEE
Q 014114 268 PDSFNIYIGNGS-G----------DLASVDIRTGKLLG----------------------------CFIGKCSGSIRSIA 308 (430)
Q Consensus 268 ~~~~~l~~~~~d-g----------~v~iwd~~~~~~~~----------------------------~~~~~~~~~v~~i~ 308 (430)
|..++|++|+.. . -+.-|.+-.+.+.. ...+.....|..|.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 998888887632 1 25566543221100 01122367899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 309 RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 309 ~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
.||||..||+...+|.|.+|++.+..+.....+
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999998887776543
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.7e-08 Score=92.78 Aligned_cols=328 Identities=13% Similarity=0.029 Sum_probs=205.5
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCC-ceEEEEccCCeEEEeccCCCceeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+++++++-.|.|.+||...+ ..+..+..+..++.-+.+-+.. ++. ..|++-.....|.+|+..+|+.+..+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~-----s~~~~l~~~~~~~qdl~W~~~r-d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLA-----SVINWLSHSNDSVQDLCWVPAR-DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ceeEEeccccCcEEEEEehhh-----hhhhhhcCCCcchhheeeeecc-CcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 478899999999999999975 5556666677775444444422 233 567777777899999999999888776
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC--C-------
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--G------- 163 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~--~------- 163 (430)
.-. ....|+.+-+.. ...+..-+..|.+.+-+.-.... .+...+.+.+... .
T Consensus 153 ys~--------~iLs~f~~DPfd-------~rh~~~l~s~g~vl~~~~l~~se----p~~pgk~~qI~sd~Sdl~~lere 213 (1062)
T KOG1912|consen 153 YSH--------EILSCFRVDPFD-------SRHFCVLGSKGFVLSCKDLGLSE----PDVPGKEFQITSDHSDLAHLERE 213 (1062)
T ss_pred cCC--------cceeeeeeCCCC-------cceEEEEccCceEEEEeccCCCC----CCCCceeEEEecCccchhhhhhh
Confidence 511 123333332221 12444445555555554322111 1122222222111 0
Q ss_pred ------------------ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 164 ------------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 164 ------------------~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
....++|+|.-+.++.......+.++|++-..++....... +.+.-+.+.|.|
T Consensus 214 ~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier---------~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 214 TATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER---------GGAKFVDVLPDP 284 (1062)
T ss_pred hhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc---------CCcceeEeccCC
Confidence 12235678876666666677789999998777776665543 334555666566
Q ss_pred CCCEEEEEeCCCcEEEEECCC----------------CCc--ceEE----------------------------------
Q 014114 226 DHRKFVAGTNDHQVRLYDTSA----------------QRR--PVMS---------------------------------- 253 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~----------------~~~--~~~~---------------------------------- 253 (430)
....|.+.-.||.+.+|--+. +.+ .+..
T Consensus 285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~ 364 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS 364 (1062)
T ss_pred CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence 666777777777777774332 000 0000
Q ss_pred ------------------e--------------------eecCCCeEEEEeeC-----------CC-------CEEEEEc
Q 014114 254 ------------------F--------------------DFRETPIKAVAEEP-----------DS-------FNIYIGN 277 (430)
Q Consensus 254 ------------------~--------------------~~~~~~i~~~~~s~-----------~~-------~~l~~~~ 277 (430)
+ ..|....++....| -+ .+++.|.
T Consensus 365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT 444 (1062)
T KOG1912|consen 365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT 444 (1062)
T ss_pred cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence 0 01112222222211 11 3578899
Q ss_pred CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEE---------EeCCCeEEEEeCCCCceeeEEeecccccee
Q 014114 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS---------CGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s---------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
..|+|.++|+.++.....+..| .+.|.++.|--...++-. ++.-+.+.+-|+++|....--.+.+.....
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvh-t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp 523 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVH-TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP 523 (1062)
T ss_pred CCceEEEEEecchhhhhhhccc-ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence 9999999999999998999998 999999999666544322 222345778899998665432244555667
Q ss_pred EEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 349 VFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 349 i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|..+..+..|++ +..-.+.-+.+||...
T Consensus 524 I~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 524 IRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ceeeeecccCceEEEEecccchHHHhhcc
Confidence 899999999999 8899999999999854
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.14 E-value=6.7e-10 Score=95.56 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=111.3
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
..+..++.+++||++..+....++++..... +...... ..-+++.|. .+...+..+..-|.++.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----------~~~~ai~~~--~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----------KRPTAISFI--REDTSVLVADKAGDVYS 133 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----------cCcceeeee--eccceEEEEeecCCcee
Confidence 3445677889999888888877777654332 1111111 223344452 33444444444444444
Q ss_pred EECCCCC-cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe-ccccCcEEEEEEcCCCCEEEEE
Q 014114 242 YDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 242 wd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
+|+.... -....+-+|-+-++.|+|+||+++|+++..|..|++-.....-.+..|. || ..-|..++.-++. .|+++
T Consensus 134 ~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~~-~LlS~ 211 (390)
T KOG3914|consen 134 FDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDNY-LLLSG 211 (390)
T ss_pred eeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-HhheeeeeeccCc-eeeec
Confidence 4433211 2255667899999999999999999999999999998877666666665 45 8999999997654 58999
Q ss_pred eCCCeEEEEeCCCCceeeEE
Q 014114 320 GLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~~~~~~ 339 (430)
|.|++|++||+.+|+.+.++
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCCcEEEEecccCCccccc
Confidence 99999999999999988775
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=1.8e-07 Score=87.50 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=156.8
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCC--------CceEEEEccCCeEEEeccCCCce
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQN--------DPLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------g~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
-|++-+....|.|-|..+- +.++.+..|...+..+.+++...|. .-+||++...|.|.|||...+..
T Consensus 27 GLiAygshslV~VVDs~s~-----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~ 101 (1062)
T KOG1912|consen 27 GLIAYGSHSLVSVVDSRSL-----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV 101 (1062)
T ss_pred ceEEEecCceEEEEehhhh-----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh
Confidence 3556566678889998875 7788888898888888877653321 23678899999999999988877
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCC-ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC-Cce
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS-RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-GTI 165 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~-~~i 165 (430)
+..++. +.+++..++|+..+. .+ ..+++-.....+.+|+...+. ++|+..-. ...
T Consensus 102 ~~~l~~--------~~~~~qdl~W~~~rd-----~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 102 INWLSH--------SNDSVQDLCWVPARD-----DSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEIL 158 (1062)
T ss_pred hhhhcC--------CCcchhheeeeeccC-----cchheeEEecCCcEEEEEEccCCc----------eeeccccCCcce
Confidence 766654 336778888887665 33 477777888899999866433 35654433 345
Q ss_pred EEEEEcC-CCCEEEEecCCCeEEEEECCC-------CceeeeecCCCC----------------CCCCcccCcceeEeEE
Q 014114 166 AFSKVDI-SEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK----------------NSLGIFTPTWFTSAAF 221 (430)
Q Consensus 166 ~~~~~~~-~~~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~ 221 (430)
.|+.+.| +...+..-+..|.|.+-+.-. ++..+.-..|.. .....+-......++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 6688988 566666666677776665421 222222111111 0000000011222345
Q ss_pred eeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC--CEEEEEcCCCCEEEEEcc
Q 014114 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~v~iwd~~ 288 (430)
+|.-+.++.......+.++|+.- ++++.......+.+.-+.+-|++ ..|++.-.||.+.+|-.+
T Consensus 239 --~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 239 --SPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred --ChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 66655555566788899999986 44566666666666677776665 568888888888888543
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=4.8e-07 Score=91.39 Aligned_cols=291 Identities=12% Similarity=0.083 Sum_probs=182.5
Q ss_pred eEEEEeccCCCCCCceEEEEccCCeEEEe----ccCCC--ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCce
Q 014114 52 KCVLAASIDDSQNDPLLAVARKNGLTDIL----NPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 52 ~~~~~~~~~~~p~g~~l~~g~~dg~i~iw----d~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
..++++.+ -++..-|+.+..+|.|.+. +..+. +.+..+. ..|.++.|.+... .
T Consensus 76 ~~ivs~~y--l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd-----------~GI~a~~WSPD~E--------l 134 (928)
T PF04762_consen 76 DKIVSFQY--LADSESLCIALASGDIILVREDPDPDEDEIEIVGSVD-----------SGILAASWSPDEE--------L 134 (928)
T ss_pred CcEEEEEe--ccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc-----------CcEEEEEECCCcC--------E
Confidence 45777777 7777789999999999999 54333 2233333 3899999988555 8
Q ss_pred EEEEccCCeeEEEEeeeecccc--------------------------cCC---------cceee---EEeeccCCceEE
Q 014114 126 LLTCTTKGKASMRSIEVTKVSA--------------------------ESS---------CSTVK---SWNVCASGTIAF 167 (430)
Q Consensus 126 ~~~~~~~g~i~v~~~~~~~~~~--------------------------~~~---------~~~i~---~~~~~~~~~i~~ 167 (430)
++..+.++++.+..-.+.+... ++. +-++. .-.+.....-..
T Consensus 135 la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ 214 (928)
T PF04762_consen 135 LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVR 214 (928)
T ss_pred EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceE
Confidence 8888888998888755543210 000 00000 000001224467
Q ss_pred EEEcCCCCEEEEecC---C---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC---CCc
Q 014114 168 SKVDISEKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQ 238 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~ 238 (430)
++|-.||.++|+.+. . ..+++|+-+ |......+.-. +--.+++| .|.|++||+... ...
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---------gLe~~l~W--rPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---------GLEGALSW--RPSGNLIASSQRLPDRHD 282 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---------CccCCccC--CCCCCEEEEEEEcCCCcE
Confidence 889999999998764 2 469999875 55443333211 22456788 899999998764 345
Q ss_pred EEEEECCCCCcceEEee--ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--EEeEEeccccCcEEEEEEcCCC-
Q 014114 239 VRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTL- 313 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~s~~~- 313 (430)
|.+|.-+..+.--..+. .....|..++|++++..||.-..|. |.+|-..+.. +.+.+.-.....+..+.|+|..
T Consensus 283 VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 283 VVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 66666554222122222 2456899999999999999987665 9999987654 3333433223455669999965
Q ss_pred CEEEEEeCCCeEEEEeC----CCCc--------eeeEE--------ee-----c-------cccceeEEEeeecCCcce-
Q 014114 314 PIIASCGLDSYLRFWDI----KTRQ--------LLSAV--------FL-----K-------QHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 314 ~~l~s~~~d~~v~iwd~----~~~~--------~~~~~--------~~-----~-------~~~~~~i~~~~~s~~g~~- 360 (430)
..|...+.+|.+..++. ..+. .+..+ .+ + -.....|.+++|++++..
T Consensus 362 ~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRF 441 (928)
T ss_pred CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeE
Confidence 44666666666655543 1110 11110 00 0 012345799999999886
Q ss_pred eeecCCCcEEEecCCC
Q 014114 361 NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 ~~~~~d~~v~vw~~~~ 376 (430)
++...||.|.+|....
T Consensus 442 avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEECCCCEEEEEecC
Confidence 8899999999998654
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=1.7e-07 Score=94.54 Aligned_cols=252 Identities=12% Similarity=0.048 Sum_probs=154.5
Q ss_pred CCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEec
Q 014114 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (430)
..+.|.++.++.... .++.+..+|.+.+...+.... ...+.+-. .-...|.+++||||+..|+..+
T Consensus 74 ~~~~ivs~~yl~d~~--------~l~~~~~~Gdi~~~~~~~~~~-----~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE--------SLCIALASGDIILVREDPDPD-----EDEIEIVG-SVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCcEEEEEeccCCC--------cEEEEECCceEEEEEccCCCC-----CceeEEEE-EEcCcEEEEEECCCcCEEEEEe
Confidence 446888899888554 899999999999884432111 11222221 1246899999999999999999
Q ss_pred CCCeEEEEECCC-----------------------CceeeeecCCCCCC---------------CCcccCcceeEeEEee
Q 014114 182 KGVEVNVWDLDK-----------------------CEKIWTAKPPPKNS---------------LGIFTPTWFTSAAFLS 223 (430)
Q Consensus 182 ~dg~v~iwd~~~-----------------------~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~~~ 223 (430)
.+++|.+..-.= |+.-..+++..... ..+...+.-..++|
T Consensus 140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW-- 217 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW-- 217 (928)
T ss_pred CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--
Confidence 999988775310 11112222211110 00001124567788
Q ss_pred CCCCCEEEEEeC---C---CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC---CCCEEEEEccCCeEEe
Q 014114 224 IDDHRKFVAGTN---D---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLG 294 (430)
Q Consensus 224 ~~~~~~l~~~~~---d---g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~ 294 (430)
..||.+||+.+. . ..|++|+-. +. .....+.-.+--.+++|-|.|++||+.-. ...|.+|.- +|-.-.
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhg 294 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHG 294 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEee
Confidence 889999998874 2 478899865 22 12222222333457899999999998764 244667764 454433
Q ss_pred EEec---cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcE
Q 014114 295 CFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPML 369 (430)
Q Consensus 295 ~~~~---~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v 369 (430)
.|.- .....|..+.|++|+..||..-.|. |.+|-..+..-.-.-.+.-.....+..+.|+|.... .....++.+
T Consensus 295 eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 295 EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 3332 2267899999999999999987666 999998876532222122121222344889987665 344444555
Q ss_pred EEec
Q 014114 370 EIQN 373 (430)
Q Consensus 370 ~vw~ 373 (430)
..++
T Consensus 374 ~~~~ 377 (928)
T PF04762_consen 374 EIYD 377 (928)
T ss_pred EEEE
Confidence 4433
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=2.3e-09 Score=89.26 Aligned_cols=284 Identities=14% Similarity=0.142 Sum_probs=163.7
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcce----------EEEEeccCCCCCCceEEEEccCCeEEEeccCC
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSK----------CVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..|+||+..|.|.++.......-..+....|+.|+... .+.++.|-....-..++..+.|.+|++|.+..
T Consensus 39 ~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiye 118 (460)
T COG5170 39 LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYE 118 (460)
T ss_pred ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeec
Confidence 56889999999999987652111223344566664321 23444443333334567777899999999854
Q ss_pred Cceeeeeee-cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC
Q 014114 85 GDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
..+...-+. .+....+|..+++.+..-...... +....++++ .+-+++.-.|.-
T Consensus 119 knlk~va~nnls~~~~~~~~g~~~s~~~l~lprl---s~hd~iiaa----------------------~p~rvyaNaH~y 173 (460)
T COG5170 119 KNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL---SEHDEIIAA----------------------KPCRVYANAHPY 173 (460)
T ss_pred ccchhhhccccccccccccCCCcCCHHHhhcccc---cccceEEEe----------------------ccceecccccee
Confidence 321111111 111111122233332211100000 000011111 134455445677
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
.|.+++|+.+.+.++++ .|-.|.+|++.-... +..++.+....+ ..-|++..|+ +...+.+...+..|.|+
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeL----teVItSaeFh-p~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEEL----TEVITSAEFH-PEMCNVFMYSSSKGEIK 247 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHH----HHHHhhcccC-HhHcceEEEecCCCcEE
Confidence 78999999888888854 566899999865332 223333321111 1347788884 22355677778899999
Q ss_pred EEECCCCCc-----ceEE----------eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-eEEeEEeccc----
Q 014114 241 LYDTSAQRR-----PVMS----------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKC---- 300 (430)
Q Consensus 241 ~wd~~~~~~-----~~~~----------~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~---- 300 (430)
+-|++.... .+.. +..-...|..+.|+++|++|++-. =.+|+|||.+.. .++.++.-|+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHH
Confidence 999984221 0111 111235788899999999998764 357999999864 4677765541
Q ss_pred -------cCcE---EEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 301 -------SGSI---RSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 301 -------~~~v---~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
...| ..+.|+-|...+++|+..+..-||-+
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 2233 34788889899999998888888864
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=1.3e-09 Score=100.65 Aligned_cols=279 Identities=9% Similarity=0.050 Sum_probs=179.7
Q ss_pred CCCCceEEEEccCCeEEEeccCC-CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEe
Q 014114 62 SQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~ 140 (430)
.|.|.-+|.++.-|.+ +.|+.. +....-+....+ =.+...+|.....+ .+-+.........+|++
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tp-------w~vad~qws~h~a~------~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITP-------WQVADVQWSPHPAK------PYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCCCCCceeeeccCc-------chhcceecccCCCC------ceeEEecCcchhhhhhh
Confidence 5566678888887754 445533 333222222111 12344455443332 26777777788889998
Q ss_pred eeecccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCce-eeeecCCCCCCCCcccCcceeE
Q 014114 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
+... +..|.+..-.|...|+.+.|+|+ ...+++++.|-.+..||+++... ++....-. .....
T Consensus 99 A~ss------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~---------s~asq 163 (1081)
T KOG0309|consen 99 AKSS------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR---------SAASQ 163 (1081)
T ss_pred hcCC------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc---------ccCce
Confidence 7543 35677777778899999999984 46788999999999999987543 33332211 23455
Q ss_pred eEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeE--EeE
Q 014114 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL--LGC 295 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~--~~~ 295 (430)
+.|. -.+++.+ +.+....|.+||++.+..++..+++|...|..+.|.. ....+.+.+.|++|+.||...... .+.
T Consensus 164 Vkwn-yk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 164 VKWN-YKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eeec-ccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 6773 2344444 4467778999999999989999999999999998864 235788899999999999875432 222
Q ss_pred EeccccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------CceeeEEeeccccceeEEEeeecC-------
Q 014114 296 FIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKT----------RQLLSAVFLKQHLNEVVFDSAFAD------- 356 (430)
Q Consensus 296 ~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~i~~~~~s~------- 356 (430)
... ..+|+.-.+-|-|. ++.---.+..|.+++.++ .++++. +.||.+.+ ...-|-.
T Consensus 242 vtt--~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~--F~GH~D~V-~eFlWR~r~e~~~d 316 (1081)
T KOG0309|consen 242 VTT--NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT--FVGHDDVV-LEFLWRKRKECDGD 316 (1081)
T ss_pred ccc--cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee--ecCcchHH-HHHhhhhcccccCC
Confidence 222 56777777777443 332222233454444332 345666 77885543 4444432
Q ss_pred ----CcceeeecCCCcEEEecCCC
Q 014114 357 ----KEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 357 ----~g~~~~~~~d~~v~vw~~~~ 376 (430)
|-+++|-+.|..+++|-...
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCccceeEEEeecCCceEeeeccH
Confidence 22238899999999998764
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.09 E-value=1.6e-07 Score=83.66 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=157.6
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcc--eE-EEEeccCCCCCCceEEEEccCCeEEEeccCCCcee-eeeeecCCC-
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSS--KC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDS- 97 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~- 97 (430)
+..+.+||+.++ .++..|...... .. ++-++.++. |+|=- ....+.|+++ ++... ..+....+.
T Consensus 107 ~n~~~vwd~~sg-----~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~g 175 (561)
T COG5354 107 KNNVFVWDIASG-----MIVFSFNGISQPYLGWPVLKFSIDDK----YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVG 175 (561)
T ss_pred cCceeEEeccCc-----eeEeeccccCCcccccceeeeeecch----hhhhh-ccCeEEEEec-CCccccCchhhccccc
Confidence 346999999987 667777665444 22 566666433 44332 3356999987 33221 111111100
Q ss_pred ----CCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 98 ----GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 98 ----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
.++|..+.-. +++|.... ....+.+.+|.+...... .+..++.+ .=..+.|++.
T Consensus 176 i~dFsisP~~n~~~-la~~tPEk------------~~kpa~~~i~sIp~~s~l-----~tk~lfk~----~~~qLkW~~~ 233 (561)
T COG5354 176 ILDFSISPEGNHDE-LAYWTPEK------------LNKPAMVRILSIPKNSVL-----VTKNLFKV----SGVQLKWQVL 233 (561)
T ss_pred eeeEEecCCCCCce-EEEEcccc------------CCCCcEEEEEEccCCCee-----eeeeeEee----cccEEEEecC
Confidence 0111111100 23332222 234556666666533211 12222222 1135677777
Q ss_pred CCEEEEec-----------CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE--eCCCcEE
Q 014114 174 EKFSLFGG-----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVR 240 (430)
Q Consensus 174 ~~~l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~ 240 (430)
+++|++-- ....++++++....+-... .. .++|...+| .|.++.+++. -.+..+.
T Consensus 234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~---------~~pVhdf~W--~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL---------KDPVHDFTW--EPLSSRFAVISGYMPASVS 301 (561)
T ss_pred CceEEEEEEEeeecccceeccceEEEEeecccccceec-cc---------cccceeeee--cccCCceeEEeccccccee
Confidence 77766421 1245777777633222111 11 267999999 7777766554 4788999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEe-EEeccccCcEEEEEEcCCCCEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l 316 (430)
++|++.. .. +...+..=..+.|+|.+++++.++-| |.|.+||......+. .+.+. ...-+.|+|+++++
T Consensus 302 ~~~lr~N--l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~ 374 (561)
T COG5354 302 VFDLRGN--LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFY 374 (561)
T ss_pred ecccccc--eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEE
Confidence 9999863 22 33334556778899999999997766 679999987654433 66553 34556899999998
Q ss_pred EEEe------CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 317 ASCG------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 317 ~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
.+.. .|..|.|||+...... + .+.+.|.|.|++
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~g~~~f----------e-l~~~~W~p~~~~ 413 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVYGAKVF----------E-LTNITWDPSGQY 413 (561)
T ss_pred EecCCCcccccCcceEEEEecCchhh----------h-hhhccccCCccc
Confidence 7763 4778999998643322 1 255567777766
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.09 E-value=1.7e-07 Score=86.93 Aligned_cols=261 Identities=14% Similarity=0.070 Sum_probs=155.7
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++.++.+|.+..+|..++ +++-++..... +.+ ++ .-.+..++++..+|.|..+|..+|+.+..+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG-----~~~W~~~~~~~---~~s-sP--~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG-----EVAWQTKVAGE---ALS-RP--VVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC-----CCcccccCCCc---eec-CC--EEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 467888999999999999876 33322222211 110 00 00124577888899999999999999888765
Q ss_pred cCCCC-CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC--------c
Q 014114 94 AGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------T 164 (430)
Q Consensus 94 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~--------~ 164 (430)
..+.. ......++. ..+.++.+..+|.+...+...... +|...... .
T Consensus 189 ~~~~~~~~~~~sP~v--------------~~~~v~~~~~~g~v~a~d~~~G~~----------~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 189 DVPSLTLRGESAPAT--------------AFGGAIVGGDNGRVSAVLMEQGQL----------IWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCcccccCCCCCEE--------------ECCEEEEEcCCCEEEEEEccCChh----------hheeccccCCCccchhc
Confidence 21100 000011111 112566677777777766543221 23221100 0
Q ss_pred eEEEEEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 165 i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
...+..+| .+..+++++.+|.+..+|+.+++.++...... ...+.. .+..++.++.+|.+..+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----------~~~~~~----~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----------VNDFAV----DGGRIYLVDQNDRVYAL 309 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----------ccCcEE----ECCEEEEEcCCCeEEEE
Confidence 01111122 34567778889999999999999988764321 112222 45677778899999999
Q ss_pred ECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEE-EEEcCCCCEEEEEe
Q 014114 243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCG 320 (430)
Q Consensus 243 d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~s~~ 320 (430)
|..+++. +..... ......+..+ .+.+|+.++.+|.|.++|..+|+.+...... ...+.+ ..+ .+..|+.++
T Consensus 310 d~~tG~~-~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t 383 (394)
T PRK11138 310 DTRGGVE-LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQA 383 (394)
T ss_pred ECCCCcE-EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEe
Confidence 9988763 332221 1111222222 2457888999999999999999998877643 233332 222 244788889
Q ss_pred CCCeEEEEeC
Q 014114 321 LDSYLRFWDI 330 (430)
Q Consensus 321 ~d~~v~iwd~ 330 (430)
.||.|+.++.
T Consensus 384 ~~G~l~~~~~ 393 (394)
T PRK11138 384 RDGTVYAITR 393 (394)
T ss_pred CCceEEEEeC
Confidence 9999988764
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=1.6e-07 Score=86.97 Aligned_cols=175 Identities=12% Similarity=0.066 Sum_probs=113.2
Q ss_pred CceEEEEEcCCCCE-EEEecC---CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-C--
Q 014114 163 GTIAFSKVDISEKF-SLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N-- 235 (430)
Q Consensus 163 ~~i~~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~-- 235 (430)
+.+....|+|+++. ++..+. ...|+++|+.+++........ .......| +||++.++... .
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~--SPDG~~la~~~~~~g 255 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ----------GMLVVSDV--SKDGSKLLLTMAPKG 255 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC----------CcEEeeEE--CCCCCEEEEEEccCC
Confidence 36778899999984 554333 356999999888765443321 33455678 89998776543 2
Q ss_pred CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-C--CEEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 236 dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
+..|.++|+..+. ...+..+........|+|||+.|+..+.. + .|.++|+.+++........ . ....|+|+
T Consensus 256 ~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPD 329 (419)
T PRK04043 256 QPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTY 329 (419)
T ss_pred CcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCC
Confidence 3468888887754 34444444334456899999888776643 3 5888888877663332211 1 12489999
Q ss_pred CCEEEEEeCC---------CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 313 LPIIASCGLD---------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 313 ~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
|++|+..+.. ..|.+.|+.++.... + ... . ......|+|||+.
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-L--T~~-~-~~~~p~~SPDG~~ 381 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-L--TAN-G-VNQFPRFSSDGGS 381 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-C--CCC-C-CcCCeEECCCCCE
Confidence 9988776643 368888988876533 2 211 1 1235789999997
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=2.7e-08 Score=80.99 Aligned_cols=215 Identities=15% Similarity=0.065 Sum_probs=124.7
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcc--c
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE--E 118 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~ 118 (430)
.+....+|.+ +.+.++.+ . +...|+++..++.+......++.+....+.- -..++..+++....-.. .
T Consensus 27 ~vD~i~~~~d-~~~~~~~~--v-~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt------~~i~~~~~~a~~sep~p~~~ 96 (319)
T KOG4714|consen 27 LVDEIMQHAD-VKLSKVSL--S-AEYILFTGETSSQIISLGKGRGRCISLWERD------DGIDPFKVLAKNSEIDPNDA 96 (319)
T ss_pred chhhcccccc-eEEEEeec--h-hhheeecccchhheeeeccceEEEechhhcc------cCcCceeeeeccCCCCCccc
Confidence 4445555554 33445554 2 2245788888888888776655544333221 11123333331111000 0
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCce-----EEEEEcCCCCEEEEecC-----CCeEEE
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-----AFSKVDISEKFSLFGGK-----GVEVNV 188 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~-----dg~v~i 188 (430)
..-.+..++++..||.+.+.+.+... .+.+.-++ .+.+....++++.++.- -+..+.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~-------------~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDL-------------ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHH-------------hhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 01234578899999999998865411 11111111 11122224455554321 123444
Q ss_pred EECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEee
Q 014114 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
|+++....+. ........|++++-+ |. .+.+++|+.||.+.+||.+....|...+..|+.+|..+-|+
T Consensus 164 ~~~~p~~t~~---------~~~~~~~~v~~l~~h--p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 164 NTLDPIKTLI---------PSKKALDAVTALCSH--PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH 232 (319)
T ss_pred eccccccccc---------ccccccccchhhhCC--cccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence 4443322111 111112447777774 44 45677888999999999998877788889999999999999
Q ss_pred C-CCCEEEEEcCCCCEEEEEccC
Q 014114 268 P-DSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 268 ~-~~~~l~~~~~dg~v~iwd~~~ 289 (430)
| ++..|+++++||.+.-||..+
T Consensus 233 pk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCCchheeEecCCCcEEEEcCCC
Confidence 8 558999999999999999864
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=7.3e-07 Score=76.73 Aligned_cols=224 Identities=17% Similarity=0.219 Sum_probs=139.7
Q ss_pred CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcce
Q 014114 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~ 153 (430)
+|.|..||..+|+.+.....-. ......+... . .++.+++++.++.+..++.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~-~--------~~~~v~~~~~~~~l~~~d~~tG~--------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------GIGGPVATAV-P--------DGGRVYVASGDGNLYALDAKTGK--------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------SCSSEEETEE-E--------ETTEEEEEETTSEEEEEETTTSE---------
T ss_pred CCEEEEEECCCCCEEEEEECCC------CCCCccceEE-E--------eCCEEEEEcCCCEEEEEECCCCC---------
Confidence 6899999999999998885411 0112221111 1 22477777888999999865332
Q ss_pred eeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-cCCCCCCCCcccCcceeEeEEeeCCCCCEEEE
Q 014114 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (430)
.+|.......+.... ...+..+++++.++.|+.+|..+|+.++.. .... ..... .......+ .+..+++
T Consensus 58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~ 127 (238)
T PF13360_consen 58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV---RSSSSPAV----DGDRLYV 127 (238)
T ss_dssp -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST---B--SEEEE----ETTEEEE
T ss_pred -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc---ccccCceE----ecCEEEE
Confidence 245444333322211 124556666778889999999999999984 3321 11110 11222333 4778888
Q ss_pred EeCCCcEEEEECCCCCcceEEeeecCCC----------e-EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecccc
Q 014114 233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 233 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (430)
+..++.|..+|+.+++. +......... + ..+.+. ++ .++.++.++.+..+|+.+++.+.....
T Consensus 128 ~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~--- 201 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKPI--- 201 (238)
T ss_dssp EETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEECS---
T ss_pred EeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEecC---
Confidence 88899999999999764 5555553322 1 223333 44 777777788644449999997653332
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
..+..+ ...++..|+.++.++.|..||+++|+.+..
T Consensus 202 ~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 202 SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 223331 345777888888999999999999998754
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.99 E-value=5.4e-07 Score=79.71 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=144.7
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceE-EEEeeccCccccccCCceEEEEccCCeeEEEEe
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV-GLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~ 140 (430)
+.||+.++-. .-|.|.+||..+.++ ..+..--+....+....+. -..+..... ...+.+++..+. |...|.+.
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa---~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFA---VVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhc---cCCCcEEEEEec-CcEEEECC
Confidence 5577776654 448899999876553 3333211111111111111 011111000 012234444444 55555543
Q ss_pred eeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC-eEEEEECCCCceeeeecCCCCCCCCcccCcceeEe
Q 014114 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
.... ...+.+.+.|.-..+..+++-++.|..|| .|-+||..+++.-...... +.|.++
T Consensus 349 ~~~~-----------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av 407 (668)
T COG4946 349 WDGY-----------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAV 407 (668)
T ss_pred CCCe-----------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEE
Confidence 2211 22345566777777777778889999999 8999999988754443332 558888
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC----CEEEEEccCCeEEeE
Q 014114 220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGC 295 (430)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~v~iwd~~~~~~~~~ 295 (430)
.. +++|++++++.....|-+.|+.++.. ...-+...+-|+.+.|+|++++||-+.-+| .|+++|+..++....
T Consensus 408 ~v--s~dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 408 KV--SPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EE--cCCCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 88 89999999999999999999998762 333334457899999999999999987775 489999987776543
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEe
Q 014114 296 FIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 296 ~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
-.. .+.=.+-+|.|++++|.--+
T Consensus 485 TT~--ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 485 TTP--TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCC--cccccCcccCCCCcEEEEEe
Confidence 322 34456678999999876543
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.98 E-value=1.5e-07 Score=83.06 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=124.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-cEEEEECCCCCcce
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~ 251 (430)
+|.+++..+. |...+.+...+-.+..-+ ...|.-..+ ..+++-++.|..|| .+-++|..+++ +
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~-----------~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e--~ 394 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGK-----------KGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGE--V 394 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCC-----------CCceEEEEE--ccCCcceEEeccCCceEEEEecCCce--E
Confidence 4666666554 356666655444443322 244666666 45666889999999 89999999865 5
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC----eEEE
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRF 327 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~----~v~i 327 (430)
..+...-+.|.++..+|+|++++++.....|.+.|+.++.....-+.. .+-|+.+.|||+++++|-+--+| .|++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 667766789999999999999999998899999999998775444443 77899999999999999886555 6999
Q ss_pred EeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 328 wd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+|+.+++....-...++ -.+.+|.|||++
T Consensus 474 ydm~~~Kiy~vTT~ta~----DfsPaFD~d~ry 502 (668)
T COG4946 474 YDMDGGKIYDVTTPTAY----DFSPAFDPDGRY 502 (668)
T ss_pred EecCCCeEEEecCCccc----ccCcccCCCCcE
Confidence 99998887665222222 266789999987
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=8.8e-09 Score=85.84 Aligned_cols=215 Identities=13% Similarity=0.147 Sum_probs=143.7
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-----eeeeecCCCCCCC---CcccCcceeEeEEeeCCCCCEEEEE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-----KIWTAKPPPKNSL---GIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
...|+++.|...|.+|++|...|.|.+|.-.... ....++.|..+.- .+.....|..+.|+.....+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999875432 1223444432211 1111246788888744444567778
Q ss_pred eCCCcEEEEECCCCC-----------------------------------------cceEEe-eecCCCeEEEEeeCCCC
Q 014114 234 TNDHQVRLYDTSAQR-----------------------------------------RPVMSF-DFRETPIKAVAEEPDSF 271 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~-----------------------------------------~~~~~~-~~~~~~i~~~~~s~~~~ 271 (430)
+.|.+|++|.+.... .|.+.. ..|..-|.+++|+.|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999876421 011111 34666788999998888
Q ss_pred EEEEEcCCCCEEEEEccCCeE---EeEEeccc----cCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce------ee
Q 014114 272 NIYIGNGSGDLASVDIRTGKL---LGCFIGKC----SGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQL------LS 337 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~----~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~------~~ 337 (430)
.++++ .|-.|.+|++..... +..++.|. ..-|++..|+|.. ..+...+..|.|++-|++...+ +.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77766 778899999874332 22333331 2458899999964 5667777889999999984321 11
Q ss_pred EEeeccc-------cceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 338 AVFLKQH-------LNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 338 ~~~~~~~-------~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
..++.+- .-..|..+.|+++|+++.+-+=.+|++||.+..
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 1111110 112368899999999977777789999998743
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=3.1e-09 Score=95.16 Aligned_cols=250 Identities=13% Similarity=0.146 Sum_probs=162.5
Q ss_pred CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe-eccCCceEEEEEcCCCCEE
Q 014114 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l 177 (430)
|.+|...|..+...++.. .+++++.|.++++|++....+..+. ....|. ..|..+|.++.|-.+.+++
T Consensus 731 f~GH~~~iRai~AidNEN--------SFiSASkDKTVKLWSik~EgD~~~t---saCQfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNEN--------SFISASKDKTVKLWSIKPEGDEIGT---SACQFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred ccCcHHHhHHHHhccccc--------ceeeccCCceEEEEEeccccCcccc---ceeeeEhhhccCcccceeeeecccee
Confidence 345556666666666544 8999999999999999765443211 112222 2577899999998887777
Q ss_pred EEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE-eCCCcEEEEECCCCCcceEEe--
Q 014114 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSF-- 254 (430)
Q Consensus 178 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~-- 254 (430)
++ -||-|.+||.--+..+........+.. ...|.++. +-+...++.+ +...+|+++|.+..+- ...+
T Consensus 800 ~S--cD~giHlWDPFigr~Laq~~dapk~~a----~~~ikcl~---nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kV 869 (1034)
T KOG4190|consen 800 AS--CDGGIHLWDPFIGRLLAQMEDAPKEGA----GGNIKCLE---NVDRHILIAGCSAESTVKLFDARSCEW-TCELKV 869 (1034)
T ss_pred ee--ccCcceeecccccchhHhhhcCcccCC----CceeEecc---cCcchheeeeccchhhheeeecccccc-eeeEEe
Confidence 75 467899999877776654433222111 02233332 3344444444 7888999999987542 3333
Q ss_pred ---eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE-EeC
Q 014114 255 ---DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF-WDI 330 (430)
Q Consensus 255 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i-wd~ 330 (430)
.+.+..+++++..+.|++++++-..|.|.+.|.++|+.+..+... ......++ .|..+.|+....|.++.+ |..
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 234567899999999999999999999999999999998877664 44444444 356677888888999998 987
Q ss_pred CCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
..+..... .+...... --...-|.. +++...+.+.||....
T Consensus 948 ldgimh~q--~kpppepa---hflqsvgpSLV~a~~Gn~lgVYad~a 989 (1034)
T KOG4190|consen 948 LDGIMHLQ--DKPPPEPA---HFLQSVGPSLVTAQNGNILGVYADSA 989 (1034)
T ss_pred cCCeeeec--cCCCCcch---hhhhccCceeEEeccCcEEEEEecch
Confidence 66655443 22111110 011122444 6666667778876544
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.1e-08 Score=91.63 Aligned_cols=273 Identities=10% Similarity=0.071 Sum_probs=164.9
Q ss_pred cceEeecCCCcEEEEEecCccC--CcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDG--GVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..+++++.|.+|++|.+..... +......+++.|..++.-+.+-- +-. ..++.||.|.+||.--|+++....
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~----~lr--~i~ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA----DLR--SIASCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee----ccc--eeeeccCcceeecccccchhHhhh
Confidence 4578999999999999975322 33345567778888865555433 222 345568999999998888766443
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc----CCceEEE
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFS 168 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~~~ 168 (430)
-. ...+....|.|+.-.+..- .++.++...+++++|..... -..-|.+.. ...+.++
T Consensus 822 da---pk~~a~~~ikcl~nv~~~i--------liAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 822 DA---PKEGAGGNIKCLENVDRHI--------LIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cC---cccCCCceeEecccCcchh--------eeeeccchhhheeeeccccc--------ceeeEEeccCCCCchheeEE
Confidence 21 1111222343433322111 33344777889988865432 223344332 2458899
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE-EECCCC
Q 014114 169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQ 247 (430)
Q Consensus 169 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~-wd~~~~ 247 (430)
+..+.|+.++.+-.+|.|.+.|.++|..+...+.-... ...++ .|..+.++....|.++.+ |....+
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd---------llqla---apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD---------LLQLA---APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch---------hhhhc---CchhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999999999999999988776654321 22222 366777888888888888 876654
Q ss_pred CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC----CeEEeEEec-cccCcEEEEEEcCCCCEEEEEeCC
Q 014114 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----GKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
.. ....+....+..-+. .-|..|+++.....+.+|--.. ...+.++.. ...+..++++--|-..-++.|...
T Consensus 951 im-h~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen 951 IM-HLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred ee-eeccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence 32 222222222222111 1244566665555666663211 011112211 114567888888877778888888
Q ss_pred CeEEE
Q 014114 323 SYLRF 327 (430)
Q Consensus 323 ~~v~i 327 (430)
|.|.+
T Consensus 1028 G~IaL 1032 (1034)
T KOG4190|consen 1028 GAIAL 1032 (1034)
T ss_pred Cceee
Confidence 88775
No 295
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.90 E-value=7.6e-06 Score=77.93 Aligned_cols=302 Identities=16% Similarity=0.154 Sum_probs=166.9
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCc----ceEEEE--eccCCCCCCceEEEEccCCeEEEeccCCCce
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHS----SKCVLA--ASIDDSQNDPLLAVARKNGLTDILNPLNGDL 87 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~ 87 (430)
..+++.++.+|.|.-.|..++ +.+-++..... ...++. ... .++..++.++.+|.|.-+|..+|+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG-----KVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC-----hhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCCCCE
Confidence 467888989999999999876 33323222111 000010 011 0125688899999999999999999
Q ss_pred eeeeeecCCC--CCCCCCCceEEEEeeccCccccccCCceEEEEc---------cCCeeEEEEeeeecccccCCcceeeE
Q 014114 88 RVAISNAGDS--GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------TKGKASMRSIEVTKVSAESSCSTVKS 156 (430)
Q Consensus 88 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~i~v~~~~~~~~~~~~~~~~i~~ 156 (430)
+..+...... .+.....++ +. ++.++.++ .+|.+..++..... .+
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~----v~----------~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~----------~~ 188 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPT----IV----------KKLVIIGSSGAEFFACGVRGALRAYDVETGK----------LL 188 (488)
T ss_pred eeeecCCCCcCcceEecCCCE----EE----------CCEEEEeccccccccCCCCcEEEEEECCCCc----------ee
Confidence 8887652210 000000111 11 11333333 23445544443222 12
Q ss_pred Eeecc---------------------CCce-EEEEEcCCCCEEEEecCCC------------------eEEEEECCCCce
Q 014114 157 WNVCA---------------------SGTI-AFSKVDISEKFSLFGGKGV------------------EVNVWDLDKCEK 196 (430)
Q Consensus 157 ~~~~~---------------------~~~i-~~~~~~~~~~~l~~~~~dg------------------~v~iwd~~~~~~ 196 (430)
|.... ...+ ...++++.+..++.++.++ .|..+|+.+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 22211 0111 1344555567777777654 799999999999
Q ss_pred eeeecCCCCCCCC--cccCcceeEeEEeeCCCCC---EEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCC
Q 014114 197 IWTAKPPPKNSLG--IFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF 271 (430)
Q Consensus 197 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 271 (430)
++..+........ ...+..+..+. .-++. .++.++.+|.+..+|..+++. +...... ...++.+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~---~~~g~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIK---PKDGKPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEecc---ccCCCeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC--c
Confidence 9987643211110 00000111111 01232 577888999999999999874 4443321 11233444 2
Q ss_pred EEEEE------------------cCCCCEEEEEccCCeEEeEEeccc-c------CcE--EEEEEcCCCCEEEEEeCCCe
Q 014114 272 NIYIG------------------NGSGDLASVDIRTGKLLGCFIGKC-S------GSI--RSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 272 ~l~~~------------------~~dg~v~iwd~~~~~~~~~~~~~~-~------~~v--~~i~~s~~~~~l~s~~~d~~ 324 (430)
.++.+ ..+|.|.-.|+.+++.+.+..... . .+. ..+.. .+.+|+.++.||.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~ 417 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY 417 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence 33332 235778889999998877665320 0 111 11222 4568888899999
Q ss_pred EEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 325 LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 325 v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
|+.+|..+|+.+....+.+.... .-+.|..+|++
T Consensus 418 l~ald~~tG~~lW~~~~~~~~~a--~P~~~~~~g~~ 451 (488)
T cd00216 418 FRAFDATTGKELWKFRTPSGIQA--TPMTYEVNGKQ 451 (488)
T ss_pred EEEEECCCCceeeEEECCCCceE--cCEEEEeCCEE
Confidence 99999999999998665433211 22335556766
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=5.4e-08 Score=79.26 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=92.8
Q ss_pred CCCCEEEEecCCCeEEEEECCCCcee-eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-----CCCcEEEEECC
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYDTS 245 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~~wd~~ 245 (430)
--++-+++++.||.+.+++.+....+ ..+.... .+. .+.++ -..++.+.++. .-+..+.|+++
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~---~~~------as~~~--~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIH---SGS------ASRKI--CRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhccccc---ccc------cccce--eecccEEecCCcceEeeccceeeeccc
Confidence 35678999999999999988652111 1111100 010 01111 11233333221 22345667776
Q ss_pred CCCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEe-EEeccccCcEEEEEEcCC-CCEEEEEeCC
Q 014114 246 AQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPT-LPIIASCGLD 322 (430)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~v~~i~~s~~-~~~l~s~~~d 322 (430)
..+..+..... ...|++++-+|.. +.+++|+.||.+.+||.+...... .++.| ..+|+.+-|+|. +..|+++++|
T Consensus 168 p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 168 PIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred ccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCC
Confidence 53322222122 2358999999865 566778899999999999875443 34566 999999999994 5789999999
Q ss_pred CeEEEEeCC
Q 014114 323 SYLRFWDIK 331 (430)
Q Consensus 323 ~~v~iwd~~ 331 (430)
|.+.-||..
T Consensus 246 Gslw~wdas 254 (319)
T KOG4714|consen 246 GSLWHWDAS 254 (319)
T ss_pred CcEEEEcCC
Confidence 999999975
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=5.3e-06 Score=69.17 Aligned_cols=256 Identities=17% Similarity=0.106 Sum_probs=135.7
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
+..++++.-.|..|-|=.....-..+....+.-....-. --.++| +||+.+||.+...|+|+++|+.. ..+..+.
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQ--WRkl~W--SpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQ--WRKLAW--SPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCch--heEEEE--CCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 346677777777776665554211111111111111111 123444 68889999999999999999854 4444444
Q ss_pred ecCCCCCCC-CCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 93 NAGDSGAQP-EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
... .+.+ -...|+++.+..... +..-...|++-...|.++-|-+...... ........-+.......|.++.++
T Consensus 82 p~~--~~~~d~~~Aiagl~Fl~~~~--s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 82 PAM--SFPGDLSDAIAGLIFLEYKK--SAQWSYELLVINYRGQLRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred ccc--ccCCccccceeeeEeecccc--ccccceeEEEEeccceeeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEc
Confidence 311 1111 235677777776543 1112346777888888888877432211 001111111222335689999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee-CCCCCEEEEEeCCCc------EEEEEC
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQ------VRLYDT 244 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~------i~~wd~ 244 (430)
|.-++|++|+.... +.+. .... ...+++-.... .|.... +....|+. ..+|.+
T Consensus 157 p~h~LLlVgG~~~~------~~~~--s~a~-----------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 157 PKHRLLLVGGCEQN------QDGM--SKAS-----------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred CCCCEEEEeccCCC------CCcc--cccc-----------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeec
Confidence 99888888775422 0000 0000 01111111110 111111 11111111 123333
Q ss_pred CCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc
Q 014114 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
-+.+ ...........|..|..||||+.|++...+|.|.+|++.+-++...+.-+
T Consensus 217 ~~~~-~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 217 PSFK-FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccee-eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 2211 01111223568999999999999999999999999999988777766543
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=4.5e-09 Score=99.20 Aligned_cols=260 Identities=17% Similarity=0.156 Sum_probs=164.2
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..|..++...++.+|+. +.++|++|+..|.|+++++.+|.....+.+|. .+++-+.-.. +
T Consensus 1095 ~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~--------SavT~vePs~--------d 1154 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ--------SAVTLVEPSV--------D 1154 (1516)
T ss_pred hhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCccccccccccc--------cccccccccC--------C
Confidence 34556777767777766 34589999999999999999999888888765 3444333222 1
Q ss_pred CceEEEEc-cCC-eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 014114 123 SRTLLTCT-TKG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 123 ~~~~~~~~-~~g-~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 200 (430)
+..+++.+ ... ...+|++.... +....|+ .-.++.|+...+.-+.|+......+||++++..+.++
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~-------~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTG-------GPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred cceeeeeccccCchHHHhcccccc-------Ccccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 22333332 222 34566553211 1222222 3457788776655566666668999999999887774
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 280 (430)
-...... .-.-++..| +|+..+++ .|| .+||.+..+ .++.|...+..+.. .|+|+|..++.-+
T Consensus 1223 lt~~~~~-----~y~~n~a~F--sP~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft~~~~G-~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1223 LTDTVTS-----SYSNNLAHF--SPCDTLIL---NDG--VLWDVRIPE-AIHRFDQFTDYGGG-GFHPSGNEVIINS--- 1285 (1516)
T ss_pred cCcchhh-----hhhcccccc--CCCcceEe---eCc--eeeeeccHH-HHhhhhhheecccc-cccCCCceEEeec---
Confidence 3322110 011256678 88887776 455 489999864 46666544433323 5899999888764
Q ss_pred CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe--C----C-----------CeEEEEeCCCCceeeEEeecc
Q 014114 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--L----D-----------SYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~----d-----------~~v~iwd~~~~~~~~~~~~~~ 343 (430)
.|||+++.+.++....- .-..|.|+..|..++..- . | ...|-||......+.++..+
T Consensus 1286 --EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~- 1359 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD- 1359 (1516)
T ss_pred --hhhhhHHHHHHhcCccc---cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-
Confidence 69999999888777653 235678888887654432 0 0 13566666777777775332
Q ss_pred ccceeEEEeeecCCcce
Q 014114 344 HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 344 ~~~~~i~~~~~s~~g~~ 360 (430)
..+..++-+|...+
T Consensus 1360 ---R~~~Dlct~~~D~~ 1373 (1516)
T KOG1832|consen 1360 ---RCLLDLCTEPTDSF 1373 (1516)
T ss_pred ---cchhhhhcCCccce
Confidence 22577788887776
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=4e-06 Score=72.11 Aligned_cols=183 Identities=15% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
++..+++++.++.|+.||..+|+.++....... +..... ..+..+++++.++.|+.+|..+++. +.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----------~~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~-~W 100 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----------ISGAPV---VDGGRVYVGTSDGSLYALDAKTGKV-LW 100 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------GGSGEE---EETTEEEEEETTSEEEEEETTTSCE-EE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------ccceee---ecccccccccceeeeEecccCCcce-ee
Confidence 566777788999999999999999998876321 111111 2455677777888999999998775 55
Q ss_pred Ee-eecC--C-CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc----------EEEEEEcCCCCEEEE
Q 014114 253 SF-DFRE--T-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS----------IRSIARHPTLPIIAS 318 (430)
Q Consensus 253 ~~-~~~~--~-~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------v~~i~~s~~~~~l~s 318 (430)
.. .... . ..........+..++++..++.|..+|+++|+.+..+... ... +..-....++ .++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 178 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDG-RVYV 178 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTT-EEEE
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECC-EEEE
Confidence 42 3221 1 1122223334778888888999999999999998888764 322 1222222344 6777
Q ss_pred EeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 319 CGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 319 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
++.++.+.-+|+.+++.+.. ... ... ..+ ...++.. +..+.++.|..||....
T Consensus 179 ~~~~g~~~~~d~~tg~~~w~--~~~--~~~-~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 179 SSGDGRVVAVDLATGEKLWS--KPI--SGI-YSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECCTSSEEEEETTTTEEEEE--ECS--S-E-CEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred EcCCCeEEEEECCCCCEEEE--ecC--CCc-cCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 77777544449999997654 221 221 221 2344444 55668999999998763
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.84 E-value=2.5e-05 Score=67.55 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=129.8
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc-CCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
.+++-...+.|..|+... +....+... . ...+++. +++ .|+.+...+ +.++|+.+++........
T Consensus 14 l~~~D~~~~~i~~~~~~~---------~~~~~~~~~--~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDT---------GEVEVIDLP--G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTT---------TEEEEEESS--S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCC---------CeEEEEecC--C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 555555677777777543 233334432 2 6677777 565 445455544 566699888654443321
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC--------CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEE-
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY- 274 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~- 274 (430)
... ......+.+++ .++|++.++.... |.|..++.. ++ +..+...-.....|+|+|+++.|+
T Consensus 80 ~~~----~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 80 DGG----VPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TTC----SCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred CCC----cccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheee
Confidence 110 00155888999 8899977776544 557778877 33 233333345678999999998776
Q ss_pred EEcCCCCEEEEEccCCe-------EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccce
Q 014114 275 IGNGSGDLASVDIRTGK-------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
+-+..+.|..|++.... ....+... .+..-.+++..+|++.++.-..+.|.+++.. |+.+..+.++..
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~--- 225 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP--- 225 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS---
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC---
Confidence 55677889999886321 12222222 2347889999999988887788999999977 999988766522
Q ss_pred eEEEeeec-CCcce
Q 014114 348 VVFDSAFA-DKEVA 360 (430)
Q Consensus 348 ~i~~~~~s-~~g~~ 360 (430)
.+++++|. ++...
T Consensus 226 ~~t~~~fgg~~~~~ 239 (246)
T PF08450_consen 226 RPTNCAFGGPDGKT 239 (246)
T ss_dssp SEEEEEEESTTSSE
T ss_pred CEEEEEEECCCCCE
Confidence 36899994 55443
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.82 E-value=2e-08 Score=58.87 Aligned_cols=39 Identities=44% Similarity=0.624 Sum_probs=36.7
Q ss_pred CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
++++.++.+| ...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899998 99999999999999999999999999997
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=2.1e-08 Score=84.88 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=100.1
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
....|.++.|...++++..|..+|.|..+|++.+ .++.......++|...|+++... ..++.+|++.+.+|+|+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r-----nqG~~~~a~rlyh~Ssvtslq~L-q~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR-----NQGNGWCAQRLYHDSSVTSLQIL-QFSQQKLMASDMTGKIK 324 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeec-----ccCCCcceEEEEcCcchhhhhhh-ccccceEeeccCcCcee
Confidence 3567888889888999999999999999999865 22222333345556778887764 34788899999999999
Q ss_pred EEECCCCCc--ceEEeeecCCCeEE--EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec
Q 014114 241 LYDTSAQRR--PVMSFDFRETPIKA--VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 241 ~wd~~~~~~--~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 298 (430)
+||++--++ .+..+.+|-..-.- +-..+....+++++.|...+||.++.+.++.+++-
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 999986432 37778888543322 23456677889999999999999999999888764
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.8e-06 Score=75.28 Aligned_cols=267 Identities=11% Similarity=0.081 Sum_probs=154.5
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc-----------
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----------- 130 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------- 130 (430)
+|-|.||++-..-| |.+|--.+-..++.+. |. .+.-+.+.+..+ +|++-+
T Consensus 219 SP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---------~Vq~idfSP~Ek--------YLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 219 SPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---------GVQFIDFSPNEK--------YLVTYSPEPIIVEEDDN 279 (698)
T ss_pred cCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---------CceeeecCCccc--------eEEEecCCccccCcccC
Confidence 67788999987766 8899755544444432 11 122222222222 444332
Q ss_pred cCCeeEEEEeeeecccccCCcceeeEEee-ccCCc-eEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCC
Q 014114 131 TKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGT-IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~-i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
....+.|||+..+... +.+.+ ..... -.-+.||.+++++|.-..+ .|.||+..+..++ .....
T Consensus 280 e~~~l~IWDI~tG~lk--------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~ll---d~Ksl--- 344 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLK--------RSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLL---DKKSL--- 344 (698)
T ss_pred CCceEEEEEccccchh--------cceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeee---ccccc---
Confidence 3456888888765432 11211 01111 2245789999999977664 6999988763332 11111
Q ss_pred CcccCcceeEeEEeeCCCCCEEEEEeC-----CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc------
Q 014114 209 GIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN------ 277 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------ 277 (430)
. ...|....| +|.+++||.-.. -..+.+..+.+.+. ++....++-.=..+-|-.+|.+|+.--
T Consensus 345 k---i~gIr~Fsw--sP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 345 K---ISGIRDFSW--SPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred C---CccccCccc--CCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 1 145777788 788887775432 12455666655432 444444443444566777787776531
Q ss_pred ----CCCCEEEEEccCCeE-EeEEeccccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-C---ceeeEEeecccc
Q 014114 278 ----GSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGL---DSYLRFWDIKT-R---QLLSAVFLKQHL 345 (430)
Q Consensus 278 ----~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~v~iwd~~~-~---~~~~~~~~~~~~ 345 (430)
.-..+.|+.++.... +..+.- ...|...+|-|.|..+++-+. -.++.+|.+++ . .++.. +..
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~--~dk-- 492 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE--LDK-- 492 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh--hcc--
Confidence 112355666654432 223332 568999999999987765543 24789998873 2 22222 221
Q ss_pred ceeEEEeeecCCcce-ee---ecCCCcEEEecCC
Q 014114 346 NEVVFDSAFADKEVA-NA---AADAPMLEIQNGN 375 (430)
Q Consensus 346 ~~~i~~~~~s~~g~~-~~---~~~d~~v~vw~~~ 375 (430)
...+.+.|+|.|++ +. ++..|.+.++|..
T Consensus 493 -~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 493 -KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred -cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 22578899999999 33 4457889999987
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=8e-08 Score=89.25 Aligned_cols=206 Identities=10% Similarity=0.104 Sum_probs=146.5
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcE
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 239 (430)
..+.+..+.++|.|+-++.++.-| +++.|+... ..-.-+.... +-.|-...|.++|...+-++......-
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--------pw~vad~qws~h~a~~~wiVsts~qka 93 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--------PWQVADVQWSPHPAKPYWIVSTSNQKA 93 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccC--------cchhcceecccCCCCceeEEecCcchh
Confidence 356778889999999888888776 666777542 2211121111 133666777656666666666666777
Q ss_pred EEEECCCC--CcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCe-EEeEEeccccCcEEEEEEcCCCCE
Q 014114 240 RLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 240 ~~wd~~~~--~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~ 315 (430)
.+|++... +..-..+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.. ++..+..- ...-..|.|+-....
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDPN 172 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCcc
Confidence 88998642 33345667899999999998865 578899999999999999865 45555544 456678999886666
Q ss_pred EEEEeCCCeEEEEeCCCCc-eeeEEeeccccceeEEEeeecCC--cceeeecCCCcEEEecCCCCCC
Q 014114 316 IASCGLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADK--EVANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 316 l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~i~~~~~s~~--g~~~~~~~d~~v~vw~~~~~~~ 379 (430)
+.+.+..+.|++||++.|. ++.. +++|.. .+..++|..- +..++.+.|++|++|+.....+
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s--~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCS--LKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEE--ecccce-eeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 6667777889999998764 4444 677744 4588888764 4448999999999999876544
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=3e-05 Score=67.00 Aligned_cols=212 Identities=18% Similarity=0.130 Sum_probs=131.6
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
++.++++-...+.|..|+..+++... +.. ....++.+.... +.++.+...+. .++++...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----------~~~~G~~~~~~~--------g~l~v~~~~~~-~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----------PGPNGMAFDRPD--------GRLYVADSGGI-AVVDPDTG 70 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EES----------SSEEEEEEECTT--------SEEEEEETTCE-EEEETTTT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-Eec----------CCCceEEEEccC--------CEEEEEEcCce-EEEecCCC
Confidence 56677777788999999987665432 222 124455554222 36666666554 34454322
Q ss_pred cccccCCcceeeEEeec----cCCceEEEEEcCCCCEEEEecCC--------CeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 144 KVSAESSCSTVKSWNVC----ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
. ...+.... .......+++.|+|++.++.... |.|..++.. ++........
T Consensus 71 ~--------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-------- 133 (246)
T PF08450_consen 71 K--------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-------- 133 (246)
T ss_dssp E--------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--------
T ss_pred c--------EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--------
Confidence 1 11122221 23457889999999977765432 568888877 4443333221
Q ss_pred cCcceeEeEEeeCCCCCEEE-EEeCCCcEEEEECCCCCc-c--eEEe-eecC--CCeEEEEeeCCCCEEEEEcCCCCEEE
Q 014114 212 TPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR-P--VMSF-DFRE--TPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~-~--~~~~-~~~~--~~i~~~~~s~~~~~l~~~~~dg~v~i 284 (430)
...+.++| +|+++.|+ +-+..+.|..+++..... . ...+ .... ...-.+++..+|++.++....+.|.+
T Consensus 134 --~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 134 --GFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp --SSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred --ccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 44788999 89998765 556788899999864322 1 1122 2222 23778999999988888778899999
Q ss_pred EEccCCeEEeEEeccccCcEEEEEEc-CCCCEEEE
Q 014114 285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIAS 318 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s 318 (430)
+|.. |+.+..+... ...+++++|. ++...|+.
T Consensus 210 ~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 210 FDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEE
T ss_pred ECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEE
Confidence 9986 9988888875 5689999994 56555443
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=8.6e-06 Score=69.99 Aligned_cols=204 Identities=15% Similarity=0.115 Sum_probs=140.6
Q ss_pred ceEEEEEcC-CCCEEEEecCCCe-EEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-----C
Q 014114 164 TIAFSKVDI-SEKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----D 236 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d 236 (430)
....++.+| ....++.+-.-|+ ..+||..+++....+.......+ .-.-.| ++||++|++.-. .
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF-------yGHg~f--s~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF-------YGHGVF--SPDGRLLYTTENDYETGR 76 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE-------ecCEEE--cCCCCEEEEeccccCCCc
Confidence 345678888 5566667766555 78999999998887766543322 234567 899999998643 5
Q ss_pred CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc------------------CCCCEEEEEccCCeEEeEEe-
Q 014114 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN------------------GSGDLASVDIRTGKLLGCFI- 297 (430)
Q Consensus 237 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~~- 297 (430)
|.|-|||....-..+..+..|.-.-..+.+.|||+.|+++. .+..+.+.|..+|+++....
T Consensus 77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 78999999943444777777766667788999998887762 23346677788888877643
Q ss_pred --ccccCcEEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCceeeEEeec----cccceeEEEeeecCCcce--ee
Q 014114 298 --GKCSGSIRSIARHPTLPIIASCGLDS-------YLRFWDIKTRQLLSAVFLK----QHLNEVVFDSAFADKEVA--NA 362 (430)
Q Consensus 298 --~~~~~~v~~i~~s~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~----~~~~~~i~~~~~s~~g~~--~~ 362 (430)
.+|..+|..+++.++|..++..-..| -|.+++ .++.+..+..+ ......+-+++++++|.. ++
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 23378999999999998776665444 244444 33333332221 122345789999999976 66
Q ss_pred ecCCCcEEEecCCCCC
Q 014114 363 AADAPMLEIQNGNDTQ 378 (430)
Q Consensus 363 ~~~d~~v~vw~~~~~~ 378 (430)
+-..+.+.+||..+..
T Consensus 235 sPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGR 250 (305)
T ss_pred CCCCCEEEEEECCCCC
Confidence 7778899999877643
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=3.9e-07 Score=86.85 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=136.1
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
++..++.|+....+..+|+.+.+......-.. ..|.-+.. +++++.+|...|+|.+-|.++.+ .++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---------~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~-~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---------SGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFE-TIH 211 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---------CceEEEEe----cCcEEEeecccceEEeecCCcCc-eee
Confidence 44566777777789999998877665544322 23555555 78899999999999999999865 599
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcC---------CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC-CEEEEEeCC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLD 322 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d 322 (430)
.+..|.+.|..+.. .|++|++++. |..|+|||++..+.+.-+.-+ -++ .-+.|+|.- ..++.++..
T Consensus 212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~P-~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YGP-QFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cCc-hhhhhcccccceEEEEecc
Confidence 99999999988765 5778888764 445899999988877665543 222 556788864 568888889
Q ss_pred CeEEEEeCCC-CceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 323 SYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 323 ~~v~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|...+-|..+ +.+......-...+..+..++++++|.. +.+..+|.|.+|...+
T Consensus 288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 9999999432 2221221121222344799999999999 9999999999998543
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.69 E-value=3.4e-05 Score=72.68 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=67.1
Q ss_pred CcEEEEECCC----CCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeE------------EeEEecc
Q 014114 237 HQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIGK 299 (430)
Q Consensus 237 g~i~~wd~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~------------~~~~~~~ 299 (430)
+.|.+.|..+ +...+..+.- ......+.++|||+++++++ .+++|.|+|+.+.+. +.+..-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4577888776 2333333332 35678899999999887766 589999999987542 333333
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.......+|.++|....|--.|..|..|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23445678999998888888999999999876
No 309
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.68 E-value=3.6e-07 Score=79.12 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=103.5
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCc---ceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEEe
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~ 297 (430)
++++++||++..+....+++.+...+ +...... ...-+++.|..+...+..+..- ..+.+|....+. ...+.
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~l 148 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPIL 148 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhh
Confidence 78889999998888877877765332 1222221 1223344444444444444433 445555554433 33455
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 298 ~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
+| -.-++.|+|+||+++|+++..|..|+|-....--.+..+ .-||. .-|..++.-++..+++++.|++|++||....
T Consensus 149 Gh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~-eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 149 GH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-CLGHK-EFVSTISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-ccccH-hheeeeeeccCceeeecCCCCcEEEEecccC
Confidence 77 889999999999999999999999999987765556554 44674 4468888888877899999999999998764
Q ss_pred C
Q 014114 378 Q 378 (430)
Q Consensus 378 ~ 378 (430)
.
T Consensus 226 k 226 (390)
T KOG3914|consen 226 K 226 (390)
T ss_pred C
Confidence 4
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.68 E-value=7.7e-08 Score=56.33 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=35.3
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEE
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd 286 (430)
++..+.+|..+|.+|+|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5788999999999999999999999999999999997
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2e-06 Score=75.70 Aligned_cols=253 Identities=13% Similarity=0.024 Sum_probs=160.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc-CCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~ 93 (430)
.-+++++.||.++.|.-..- .....+..|..|...+..++.+. +|-++.+... |..++++|+++-..+..++.
T Consensus 21 ~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeEEEeeccchhhhccc
Confidence 44789999999999976541 11134555666766655556655 4557788666 99999999988776655544
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
.... .. ..|..... . .-...-++.-.+|.+.|+|-.... ..+..+.--|..+|.++.+++.
T Consensus 95 ~~lP-------g~--a~wv~skG-d--~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 95 VDLP-------GF--AEWVTSKG-D--KISLIAVSLFKSGKIFVVDGFGDF-------CQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred ccCC-------Cc--eEEecCCC-C--eeeeEEeecccCCCcEEECCcCCc-------CccceecccccCceEEEEeecc
Confidence 2111 11 11211110 0 000122333456777777743211 2344455567789999999999
Q ss_pred CCEEEEecCCCeEEEEECCC------CceeeeecCCCCCCCC-cccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 174 EKFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLG-IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+..+++....|.|.-|.... .+..+.++... ..+. ........++.| +|++..+.+-+.|..|++++..+
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-dLy~f~K~Kt~pts~Ef--sp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-DLYGFPKAKTEPTSFEF--SPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccc-hhhcccccccCccceEE--ccccCcccccCcccEEEEEEecc
Confidence 99999999999999998872 22223332221 1111 011244678888 89999999999999999999987
Q ss_pred CCcceEEee--------------------------------ecC-CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE
Q 014114 247 QRRPVMSFD--------------------------------FRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 247 ~~~~~~~~~--------------------------------~~~-~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
++. ++.+. -|. ..-+.+.|...+++|+-|+-=| |++.++.++++.
T Consensus 233 Gkl-vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 233 GKL-VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred chh-hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 642 21111 011 2344567888899999887666 899999998887
Q ss_pred eEEe
Q 014114 294 GCFI 297 (430)
Q Consensus 294 ~~~~ 297 (430)
+.+-
T Consensus 311 ri~g 314 (558)
T KOG0882|consen 311 RILG 314 (558)
T ss_pred EEec
Confidence 6653
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-07 Score=83.44 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=138.0
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeecC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~ 202 (430)
..+++++.||.++.|.-.... ....++.+. .|.+.|.+++.+-++.++.+.+. |..++++|+.+-..+.-++.
T Consensus 21 ~fiiqASlDGh~KFWkKs~is-----GvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRIS-----GVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred heEEeeecchhhhhcCCCCcc-----ceeehhhhH-HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 489999999999999743211 111223333 56678888999989999999777 99999999987554432222
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCC---CEEEEEeCCCcEEEEECCCCCcceEE-eeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.. ....+.|..++.. ..-++.-.++.+.++|-....++... -..|..+|..+.+.+-+..+++...
T Consensus 95 ~~----------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 95 VD----------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cc----------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 11 0111222212321 22333446889999998875544433 3458999999999999999999999
Q ss_pred CCCEEEEEccC------CeEE---------eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 279 SGDLASVDIRT------GKLL---------GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 279 dg~v~iwd~~~------~~~~---------~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
.|.|..|.... .+.. ..+... .....++.|+|++..+.+-+.|..|+++++++|+.++.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~-Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA-KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhccccc-ccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 99999998862 1111 112222 56788999999999999999999999999999876654
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=1e-06 Score=84.09 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=125.0
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
..++.|+....+..+|+.... ..+..++..++ |.-+.. +++++.+|...|+|.+-|+.+.+.++++..|
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~--------e~r~~~v~a~~-v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEK--------ETRTTNVSASG-VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred cceeecchhhheeeeecccce--------eeeeeeccCCc-eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc
Confidence 355555555555555554322 33344443323 443333 6789999999999999999999999999998
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeC---------CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC-CEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNI 273 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l 273 (430)
. +.|.++.. .|+.|++++. |..|++||++..+. +..+..+-++ .-+.|+|.- ..+
T Consensus 217 s---------~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 217 S---------GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred c---------cceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceE
Confidence 7 55666555 7888988875 55689999998553 4444444333 456677753 577
Q ss_pred EEEcCCCCEEEEEcc---CCeE-EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 274 YIGNGSGDLASVDIR---TGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~---~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
++.+..|...+-|.. .... +..+... ...+..+.+++++..++.+..+|.|.+|.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 888899999999843 2211 2222222 55699999999999999999999999997
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.3e-07 Score=76.93 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=67.5
Q ss_pred ccCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCc
Q 014114 160 CASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 238 (430)
.++..|..++|+|..+ ++..++.+++|.+.|+++...+..+..+ ..+.+++|. -.+.++|+.|..+|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----------~~~wSC~wD-lde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----------NQIWSCCWD-LDERHVIYAGLQNGM 259 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----------CCceeeeec-cCCcceeEEeccCce
Confidence 3566799999999766 7888999999999999998887777655 558889995 234567888889999
Q ss_pred EEEEECCCCCcceEEee
Q 014114 239 VRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~ 255 (430)
|.+||++..+.++..+.
T Consensus 260 VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELV 276 (463)
T ss_pred EEEEEccCCCchHhhhh
Confidence 99999998765544443
No 315
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.64 E-value=0.00026 Score=67.78 Aligned_cols=320 Identities=13% Similarity=0.150 Sum_probs=169.9
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCC-CcceE-EEEe---ccCCCCCCceEEEEccCCeEEEeccCCCcee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDP-HSSKC-VLAA---SIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
..+++.++.++.|.-.|..++ +++=++... ..... ..+. ...-.-.+..|+.++.|+.|.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-----k~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-----KELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-----ceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 367888888899988898876 333222211 00000 0000 0000001245788889999999999999998
Q ss_pred eeeeecCCC-CCCCCCCceEEEEeeccCccccccCCceEEEEcc------CCeeEEEEeeeeccc----ccCCc------
Q 014114 89 VAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVS----AESSC------ 151 (430)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~v~~~~~~~~~----~~~~~------ 151 (430)
......... .+.....++. . ++.++.+.. +|.+..++.+..... .....
T Consensus 144 W~~~~~~~~~~~~~tssP~v----~----------~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLV----V----------KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred eecccccccccccccCCcEE----E----------CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 876541110 0000001111 0 113333322 455555554433211 00000
Q ss_pred --------ceee-----EEeeccCCce-EEEEEcCCCCEEEEecCC-----C-----------eEEEEECCCCceeeeec
Q 014114 152 --------STVK-----SWNVCASGTI-AFSKVDISEKFSLFGGKG-----V-----------EVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 152 --------~~i~-----~~~~~~~~~i-~~~~~~~~~~~l~~~~~d-----g-----------~v~iwd~~~~~~~~~~~ 201 (430)
.-.. .|... ++.+ ..+++.|...+++.+..+ + .|.-.|+++|+..+.++
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~g-g~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTG-GGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred cccccccccccCCCCCCccccC-CCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 0000 12211 1222 245777777777766521 2 68888999999999887
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCC---EEEEEeCCCcEEEEECCCCCcceEE--------e----eecC-CCe----
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMS--------F----DFRE-TPI---- 261 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~--------~----~~~~-~~i---- 261 (430)
.......+........-+.. ..+++ .++.+..+|.++++|-.+++. +.. + .... .++
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~--~~~G~~~~~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~~~~~~~~g~p~~~~~ 365 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDL--KKDGKPRKLLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWATGVDLKTGRPIEVPE 365 (527)
T ss_pred CCCCCCccccCCCCcEEEEe--ccCCcEEEEEEEeCCCceEEEEECCCCce-eccccccCCcccccccCCCCCCCccChh
Confidence 65444333322222222333 33565 788999999999999998763 211 1 0000 000
Q ss_pred ------------------------EEEEeeCCCCEEEEEcCC---------------------------------CCEEE
Q 014114 262 ------------------------KAVAEEPDSFNIYIGNGS---------------------------------GDLAS 284 (430)
Q Consensus 262 ------------------------~~~~~s~~~~~l~~~~~d---------------------------------g~v~i 284 (430)
..++++|+..++++...+ |.|.-
T Consensus 366 ~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~A 445 (527)
T TIGR03075 366 ARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIA 445 (527)
T ss_pred hCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEE
Confidence 114566665555443333 34777
Q ss_pred EEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+|+.+++.+...... .....+. +.-.+.+++.+..||.++.+|.++|+.+..+.+.+...+ .=+.|.-+|+.
T Consensus 446 iD~~tGk~~W~~~~~-~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a--~P~ty~~~G~q 517 (527)
T TIGR03075 446 WDPITGKIVWEHKED-FPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVG--PPVTYEQDGKQ 517 (527)
T ss_pred EeCCCCceeeEecCC-CCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCcee--cCEEEEeCCEE
Confidence 888888877666532 1111111 112445777788899999999999999998766543222 22344456665
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=7.1e-05 Score=61.65 Aligned_cols=264 Identities=13% Similarity=0.103 Sum_probs=130.3
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++.|...|.+.+-+..++ .+...|..- +.+.+-+.+ .+++.++..|+.|+.....|+.+..++...+.-.
T Consensus 66 VV~GCy~g~lYfl~~~tG-----s~~w~f~~~-~~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcgG- 135 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTG-----SQIWNFVIL-ETVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG- 135 (354)
T ss_pred EEEEEccCcEEEEEecch-----hheeeeeeh-hhhccceEE---cCCCceEEEecCCCcEEEecccccceEEecccCC-
Confidence 566777777777777775 444444322 222233322 4577899999999999999999888887765411
Q ss_pred CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCE
Q 014114 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
.-..+-.+-. ..+.+.++...|.+.--.....+ .-.+|.....++|.+--.. -+..
T Consensus 136 -------~~f~sP~i~~--------g~~sly~a~t~G~vlavt~~~~~--------~~~~w~~~~~~PiF~splc-v~~s 191 (354)
T KOG4649|consen 136 -------GTFVSPVIAP--------GDGSLYAAITAGAVLAVTKNPYS--------STEFWAATRFGPIFASPLC-VGSS 191 (354)
T ss_pred -------ceeccceecC--------CCceEEEEeccceEEEEccCCCC--------cceehhhhcCCccccCcee-ccce
Confidence 1111111111 22356666666655443332211 1234444444444321000 1345
Q ss_pred EEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcE--------EEEECCCCC
Q 014114 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV--------RLYDTSAQR 248 (430)
Q Consensus 177 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i--------~~wd~~~~~ 248 (430)
+..+.-||.+.-++ ..|+.++....... |..---...|..+.+..+..+..+ .+|..+.+.
T Consensus 192 v~i~~VdG~l~~f~-~sG~qvwr~~t~Gp----------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~ 260 (354)
T KOG4649|consen 192 VIITTVDGVLTSFD-ESGRQVWRPATKGP----------IFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT 260 (354)
T ss_pred EEEEEeccEEEEEc-CCCcEEEeecCCCc----------eecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc
Confidence 55566677777777 56666665443211 110000001333334433333322 344444432
Q ss_pred cceEEeeecCCCeEEEEee-C---CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccC---cEEEEEE------cC---C
Q 014114 249 RPVMSFDFRETPIKAVAEE-P---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG---SIRSIAR------HP---T 312 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~s-~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~v~~i~~------s~---~ 312 (430)
.....+. +-..++++ | ..++|..++.||.+.|.-.+ +.+.....| .+ .+..+.+ +| +
T Consensus 261 t~~vy~~----p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~--~sl~~~~s~-~g~lq~~~~~el~~eIFsSPvii~ 333 (354)
T KOG4649|consen 261 TLHVYLS----PKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS--KSLAEISSN-GGELQNLEAIELSNEIFSSPVIID 333 (354)
T ss_pred EEEEEeC----cccceeccCCCCcchhhhhhhcCCCcEEEEEec--ccccccccC-CCccceEEEeecCcccccCCeEEc
Confidence 1000000 00011111 1 13577788899988887443 223333322 22 2222222 22 3
Q ss_pred CCEEEEEeCCCeEEEEeCCCC
Q 014114 313 LPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~~~~ 333 (430)
| .|+.|+.|..|+-||+.++
T Consensus 334 g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 334 G-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred c-EEEEEEccCeEEEEecccc
Confidence 4 5788889999999999764
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=0.00021 Score=62.42 Aligned_cols=274 Identities=14% Similarity=0.073 Sum_probs=149.2
Q ss_pred CcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEE----------ccCCeEEEeccCCCceeeeeee
Q 014114 24 GLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVA----------RKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g----------~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
+.+.|.|.+.+ +++......-.+ -+.+ +|+++.++++ -..-.|.+||..+-+....+..
T Consensus 17 ~rv~viD~d~~-----k~lGmi~~g~~~--~~~~----spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i 85 (342)
T PF06433_consen 17 SRVYVIDADSG-----KLLGMIDTGFLG--NVAL----SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI 85 (342)
T ss_dssp EEEEEEETTTT-----EEEEEEEEESSE--EEEE-----TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEECCCC-----cEEEEeecccCC--ceeE----CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec
Confidence 57888888775 444333221111 1222 5677777763 3445699999998888777765
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC---------Cc
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS---------GT 164 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~---------~~ 164 (430)
. .......+ . ..+.+.....+..+.|+++.-.. .|.+.++... ++
T Consensus 86 P-------~k~R~~~~---~--------~~~~~~ls~dgk~~~V~N~TPa~--------SVtVVDl~~~kvv~ei~~PGC 139 (342)
T PF06433_consen 86 P-------PKPRAQVV---P--------YKNMFALSADGKFLYVQNFTPAT--------SVTVVDLAAKKVVGEIDTPGC 139 (342)
T ss_dssp T-------TS-B--BS-------------GGGEEE-TTSSEEEEEEESSSE--------EEEEEETTTTEEEEEEEGTSE
T ss_pred C-------Ccchheec---c--------cccceEEccCCcEEEEEccCCCC--------eEEEEECCCCceeeeecCCCE
Confidence 2 11111111 1 11244444455567777764322 3334443332 32
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEE
Q 014114 165 IAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd 243 (430)
..-.-.. ..-+.+-+.||.+.-..+. .|+....... .+.......+..-.+ ...+..++-.+.+|.|+-.|
T Consensus 140 ~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----~F~~~~dp~f~~~~~--~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 140 WLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTK----VFDPDDDPLFEHPAY--SRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEE----ESSTTTS-B-S--EE--ETTTTEEEEEBTTSEEEEEE
T ss_pred EEEEecC--CCceEEEecCCceEEEEECCCCCEeEeecc----ccCCCCcccccccce--ECCCCeEEEEecCCEEEEEe
Confidence 2222222 2446677889999988887 4554322110 111100011223333 34555666678999999999
Q ss_pred CCCCCc-ceEEeee----------cCCCeEEEEeeCCCCEEEEEcC---CC-------CEEEEEccCCeEEeEEeccccC
Q 014114 244 TSAQRR-PVMSFDF----------RETPIKAVAEEPDSFNIYIGNG---SG-------DLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 244 ~~~~~~-~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~---dg-------~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
+..... ....+.. ..+.-.-+++++..+.|++--. ++ .|.+||+.+++.+..+.. ..
T Consensus 212 lsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~ 289 (342)
T PF06433_consen 212 LSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EH 289 (342)
T ss_dssp ETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EE
T ss_pred ccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CC
Confidence 876431 1111211 0123345777776655555321 11 288889999999999986 34
Q ss_pred cEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeEEeeccc
Q 014114 303 SIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 303 ~v~~i~~s~~~~-~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~ 344 (430)
++.+|+.+.+.+ +|++.+ .++.+.+||..+|+.+..+.--+.
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 688999998764 666554 689999999999999998643333
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.7e-05 Score=75.57 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=130.5
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCc-eEEEEeeccCccccccCCceEEEEccCCe-----e
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKGK-----A 135 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----i 135 (430)
++.+..++.|+.+|.|.+++- .-+.+..++.+. .. +..+...+.+. .|++.++|+. +
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~--------~siv~~L~~~~~~~--------~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYE--------QSIVQFLYILNKQN--------FLFSVGEDEQGNPVLL 94 (933)
T ss_pred cCCCceEEEeeccccEEEecc-cceeeehheecc--------hhhhhHhhcccCce--------EEEEEeecCCCCceEE
Confidence 345677999999999999974 444446665533 22 33333333222 6777766554 8
Q ss_pred EEEEeeeecccccCCccee---eEEeec---cCCceEEEEEcCCCCEEEEecCCCeEEEEECCC--CceeeeecCCCCCC
Q 014114 136 SMRSIEVTKVSAESSCSTV---KSWNVC---ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNS 207 (430)
Q Consensus 136 ~v~~~~~~~~~~~~~~~~i---~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~ 207 (430)
+||+++....... ...+ +++... ...++.+++++.+-+.+++|-.+|.|..+.-.- .+-.+....+.
T Consensus 95 kiw~lek~~~n~s--P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~--- 169 (933)
T KOG2114|consen 95 KIWDLEKVDKNNS--PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR--- 169 (933)
T ss_pred EEecccccCCCCC--cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc---
Confidence 8999886532211 2233 444422 235788999999999999999999999985321 11111111111
Q ss_pred CCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce-EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEE
Q 014114 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd 286 (430)
...+|+.++|. .++..++-...-..|.+|.+.. +.|. ..+..|..++.|.++++....+++++ +..|.+|+
T Consensus 170 ----~~~pITgL~~~--~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 170 ----GKEPITGLALR--SDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ----CCCCceeeEEe--cCCceeEEEEecceeEEEEecC-CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEc
Confidence 12679999995 4555422223345789999985 4343 44777888999999987665466654 44699999
Q ss_pred ccCCeEEeEEe-cc
Q 014114 287 IRTGKLLGCFI-GK 299 (430)
Q Consensus 287 ~~~~~~~~~~~-~~ 299 (430)
.....+-..|. +|
T Consensus 242 sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGE 255 (933)
T ss_pred CCCcceeeeecCCC
Confidence 97666666666 44
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.4e-06 Score=80.63 Aligned_cols=183 Identities=20% Similarity=0.171 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd 243 (430)
.+.|.+++ +.+|+.|+-+|.|++++..-.- .+...+. .. .-+|.++++|+.||+|.|..
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s---------~~--------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHS---------SS--------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccc---------cc--------ccCCceEEEecCCCcEEEee
Confidence 45555554 6889999999999999875322 2222221 00 34799999999999999999
Q ss_pred CCCCCcceEEeeecCCCeEEEEeeCC-----CCEEEEEcCCCCEEEEEccCC-e-EEeEEeccccCcEEEEEEcCCCCEE
Q 014114 244 TSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIGNGSGDLASVDIRTG-K-LLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~v~iwd~~~~-~-~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
+-+.+. ...+..+ .++.+|+++|+ .+.+++|+..| +.++.-+-. . .-..+... .++|.++.| .|.++
T Consensus 100 l~~~~~-~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~lI 173 (846)
T KOG2066|consen 100 LFTDDE-ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNLI 173 (846)
T ss_pred ccCCcc-ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcEE
Confidence 888664 5555553 58999999997 47889999888 777754311 1 11134444 789999999 78899
Q ss_pred EEEeCCCeEEEEeCCCCceeeEEeeccc---cceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 317 ASCGLDSYLRFWDIKTRQLLSAVFLKQH---LNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 317 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
|-++.+| |+|||+.+++.+..+..+.. .+.....+.|.++.+++.|= ..+|+|....
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCeEEEEEEe
Confidence 9998888 99999999988877543221 11123567888777665443 3355555444
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.58 E-value=0.00018 Score=68.67 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=157.9
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceE--EEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV--GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
..++.++.++.|.-.|..+|+.+..+....... .....+. .+... ..+.++.++.+|.+..++....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~---------~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYW---------DPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEc---------cCCeEEEecCCCeEEEEECCCC
Confidence 357788889999999999999888775522100 0000000 01111 1147788888888888886543
Q ss_pred cccccCCcceeeEEeeccCCce---EEEEEcC--CCCEEEEec---------CCCeEEEEECCCCceeeeecCCCCCCCC
Q 014114 144 KVSAESSCSTVKSWNVCASGTI---AFSKVDI--SEKFSLFGG---------KGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i---~~~~~~~--~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 209 (430)
. .+|.......+ ..+.-+| .+..++.++ .++.|..+|..+++.++...........
T Consensus 131 ~----------~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 131 K----------QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred C----------EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 3 23444332221 0011112 224455553 4688999999999999987653221111
Q ss_pred ccc-----------Ccce-eEeEEeeCCCCCEEEEEeCCC------------------cEEEEECCCCCcceEEeeecCC
Q 014114 210 IFT-----------PTWF-TSAAFLSIDDHRKFVAGTNDH------------------QVRLYDTSAQRRPVMSFDFRET 259 (430)
Q Consensus 210 ~~~-----------~~~v-~~~~~~~~~~~~~l~~~~~dg------------------~i~~wd~~~~~~~~~~~~~~~~ 259 (430)
... ...+ ...++ ++.+..++.++.++ .|.-+|..+++. +..++.-..
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~--d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~ 277 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTY--DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPH 277 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeE--eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCC
Confidence 100 0001 12233 34566777777665 699999998774 544432111
Q ss_pred Ce------EEEEee----CCCC---EEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEE-------
Q 014114 260 PI------KAVAEE----PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC------- 319 (430)
Q Consensus 260 ~i------~~~~~s----~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~------- 319 (430)
.+ ....+. -++. .+++++.+|.+..+|.++|+.+...... ...++.+| + .++.+
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~-~vyv~~~~~~~~ 351 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-G-LVYLGAFHIPLG 351 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-c-eEEEcccccccc
Confidence 11 011111 1332 6788889999999999999998776431 12234444 2 22222
Q ss_pred -----------eCCCeEEEEeCCCCceeeEEeeccccc-----eeEE--EeeecCCcceeeecCCCcEEEecCCCCC
Q 014114 320 -----------GLDSYLRFWDIKTRQLLSAVFLKQHLN-----EVVF--DSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 320 -----------~~d~~v~iwd~~~~~~~~~~~~~~~~~-----~~i~--~~~~s~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
..+|.|.-.|+.+|+.+.......+.. .... .+.. ..+.+++++.||.|+.+|..+..
T Consensus 352 ~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 352 LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCc
Confidence 246789999999999988854431100 0000 1111 22334777889999999987644
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.52 E-value=0.00011 Score=63.40 Aligned_cols=183 Identities=17% Similarity=0.159 Sum_probs=117.2
Q ss_pred EEEcCCCCEEEEec-----CCCeEEEEECC-CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC------
Q 014114 168 SKVDISEKFSLFGG-----KGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------ 235 (430)
Q Consensus 168 ~~~~~~~~~l~~~~-----~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------ 235 (430)
-.|+++|++|++.- ..|.|-|||.. +.+.+.++..+... -..+.+ .||+..|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG---------PHel~l--~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG---------PHELLL--MPDGETLVVANGGIETHP 124 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC---------hhhEEE--cCCCCEEEEEcCCCccCc
Confidence 37899999999753 35789999998 66677777665422 334556 688877776532
Q ss_pred ------------CCcEEEEECCCCCcceEE--e--eecCCCeEEEEeeCCCCEEEEEcCCCC-------EEEEEccCCeE
Q 014114 236 ------------DHQVRLYDTSAQRRPVMS--F--DFRETPIKAVAEEPDSFNIYIGNGSGD-------LASVDIRTGKL 292 (430)
Q Consensus 236 ------------dg~i~~wd~~~~~~~~~~--~--~~~~~~i~~~~~s~~~~~l~~~~~dg~-------v~iwd~~~~~~ 292 (430)
+-.+.+.|..+++. +.. + ..|..+|+.+++.++|..++..-..|. |-+++. ++.
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~ 201 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGAL-LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGA 201 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCce-eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCc
Confidence 22345556666553 333 3 336778999999999866555433332 334433 332
Q ss_pred EeEEecc------ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecC
Q 014114 293 LGCFIGK------CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAAD 365 (430)
Q Consensus 293 ~~~~~~~------~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~ 365 (430)
+..+... ..+.+-+|++++++.++++.+ .-+.+.+||..+++.+....+. . +..++-.+++ ++..+.
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D-~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----D-ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----c-eeeeeecCCc-eEEeCC
Confidence 2222211 146899999999998775555 7889999999999998874332 1 3666777777 633333
Q ss_pred CCcEE
Q 014114 366 APMLE 370 (430)
Q Consensus 366 d~~v~ 370 (430)
.|.+.
T Consensus 276 ~G~~~ 280 (305)
T PF07433_consen 276 QGQLI 280 (305)
T ss_pred CccEE
Confidence 34433
No 322
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=0.00038 Score=64.74 Aligned_cols=152 Identities=10% Similarity=0.040 Sum_probs=93.9
Q ss_pred CCceEEEEEcCCCCEEEEe-cC--CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-C
Q 014114 162 SGTIAFSKVDISEKFSLFG-GK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H 237 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~-~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g 237 (430)
.+......|+|+++.|+.. +. +..|+++|+.++.... +.... .......| +||++.|+..+.. +
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~---------~~d~~p~~--SPDG~~I~F~Sdr~g 299 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYP---------GIDVNGNF--VEDDKRIVFVSDRLG 299 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCC---------CccCccEE--CCCCCEEEEEECCCC
Confidence 3455667899999877643 22 3568888987776433 32221 11223467 8999887776632 3
Q ss_pred --cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---------CCEEEEEccCCeEEeEEeccccCcEEE
Q 014114 238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 238 --~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (430)
.|++.|+.+++. ..+...... ...|+|+|++|+..... ..|.+.|+.++... .+... .....
T Consensus 300 ~~~Iy~~dl~~g~~--~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~ 372 (419)
T PRK04043 300 YPNIFMKKLNSGSV--EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQF 372 (419)
T ss_pred CceEEEEECCCCCe--EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCC
Confidence 688888877553 222221111 24899999988776643 25788898777543 33322 22335
Q ss_pred EEEcCCCCEEEEEeCCC---eEEEEeCCC
Q 014114 307 IARHPTLPIIASCGLDS---YLRFWDIKT 332 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~---~v~iwd~~~ 332 (430)
..|+|||+.|+....++ .+.+.++..
T Consensus 373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 78999999877665332 466667654
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.2e-05 Score=76.00 Aligned_cols=173 Identities=16% Similarity=0.093 Sum_probs=119.6
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
..++-|+..|.+.+++....+.. ...|... ..+|.++++|+.||+|.|-.+-+.+...++.-+
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~~~-----------~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNPKT-----------NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred ceeeeccccceEEEEecCCcccc-----------ccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 47888888999988887643310 1112111 458999999999999999998887766555433
Q ss_pred CCCCCCcccCcceeEeEEeeCCC-----CCEEEEEeCCCcEEEEECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
.++.++++ +|+ .+.+++|+.-| +.++.-+-... ....+....++|.++.|. |++||-++
T Consensus 113 ----------rpiksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 113 ----------RPIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ----------CcceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 45888888 566 56899999888 77775442111 112345557899999995 66999987
Q ss_pred CCCCEEEEEccCCeEEeEEeccccCc------EEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 278 GSGDLASVDIRTGKLLGCFIGKCSGS------IRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~~~~~------v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.+| |++||+.+++.+..+... ... ...+.|.++.+ |+.| +.-+|+|..++.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p-~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPP-SQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCC-CCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 777 899999999888777654 222 33466766553 4444 455788888873
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.50 E-value=0.00017 Score=61.29 Aligned_cols=198 Identities=8% Similarity=0.069 Sum_probs=118.1
Q ss_pred CceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
..+..++|+|+.+ ++++....+.|..+++ +|+.+..+.-... .-...+++ -.++.++++.-.++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~--------~D~EgI~y--~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF--------GDYEGITY--LGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS---------SSEEEEEE---STTEEEEEETTTTEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC--------CCceeEEE--ECCCEEEEEEcCCCcEEE
Confidence 4589999999654 6667778889998997 5777777654321 33677888 456666666556899999
Q ss_pred EECCCCCcc--e---EEee-----ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC---CeEEeEEe--c-----ccc
Q 014114 242 YDTSAQRRP--V---MSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---GKLLGCFI--G-----KCS 301 (430)
Q Consensus 242 wd~~~~~~~--~---~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~--~-----~~~ 301 (430)
+++...... . ..+. .++..+-.++|+|.++.|+++-...-..||.+.. ...+.... . ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 988432211 1 1121 2345689999999988888887776677777654 21111111 1 113
Q ss_pred CcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEEeeccccc------eeEEEeeecCCcceeeecCCCcEEEe
Q 014114 302 GSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN------EVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 302 ~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~------~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
..+.+++++|.. .+++....+..|.++| .+|+.+..+.+..... ...-.++|.++|.+..++..+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 468899999964 5667777888999999 6788888777665211 12478899999999777777766665
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.2e-07 Score=89.89 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=141.3
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
...++|+.+..... .++.|+..|.++++++..+... +. ++ +|+..|+-+.-+.+|..+++.+.
T Consensus 1101 ~~~fTc~afs~~~~--------hL~vG~~~Geik~~nv~sG~~e-----~s---~n-cH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTN--------HLAVGSHAGEIKIFNVSSGSME-----ES---VN-CHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred ccceeeEEeecCCc--------eEEeeeccceEEEEEccCcccc-----cc---cc-ccccccccccccCCcceeeeecc
Confidence 35677788776444 9999999999999998764421 11 12 56778888887878877766544
Q ss_pred CC--eEEEEECCC-CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee---
Q 014114 183 GV--EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--- 256 (430)
Q Consensus 183 dg--~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--- 256 (430)
-. -..+|++.+ +...+++.. -.++.| +.....-+.|+.-....+||+.+...+...+.+
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~e-------------d~~vkF--sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE-------------DKAVKF--SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred ccCchHHHhccccccCccccccc-------------cceeeh--hhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence 32 467899864 444444433 456777 444444455666667899999986643332332
Q ss_pred cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 257 ~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
.+..-.+..|+|+..+++ .|| .+||++..+.++.|... ...+ .=.|+|.|..++.-++ |||+++.+.+
T Consensus 1229 ~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f-t~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF-TDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred hhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhh-eecc-cccccCCCceEEeech-----hhhhHHHHHH
Confidence 223346788999988877 666 58999998888877654 3222 2369999998888765 9999999988
Q ss_pred eEEeeccccceeEEEeeecCCcce
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+.++ .- + -..+.|+..|.+
T Consensus 1297 h~VP--~L-d--qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1297 HSVP--SL-D--QCAVTFNSTGDV 1315 (1516)
T ss_pred hcCc--cc-c--ceEEEeccCccc
Confidence 8742 21 1 155678777776
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=1.9e-05 Score=78.09 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=134.1
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
..|.++.|..+.+.++.+...|.|.+-|..+......-.. .+.|.+++| +||+..++..+..+++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v----------d~GI~aasw--S~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV----------DNGISAASW--SPDEELLALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec----------cCceEEEee--cCCCcEEEEEeCCcEEEEE
Confidence 4788999999999999999999999998877544322111 156999999 9999999999888887664
Q ss_pred ECC----CCCc------------------ceEEeeec---------------------CCCeEEEEeeCCCCEEEEE---
Q 014114 243 DTS----AQRR------------------PVMSFDFR---------------------ETPIKAVAEEPDSFNIYIG--- 276 (430)
Q Consensus 243 d~~----~~~~------------------~~~~~~~~---------------------~~~i~~~~~s~~~~~l~~~--- 276 (430)
+-. ..+. .-..|.+. .+.=++|.|--||+++++.
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 321 1000 00112110 0112358899999999883
Q ss_pred --cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeEEeecccccee-EE
Q 014114 277 --NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEV-VF 350 (430)
Q Consensus 277 --~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~-i~ 350 (430)
.....|++||.+ |.+-..-... .+-=.+++|-|.|.++++-. .|+.|.+|. ++|-....+.++-..+.. +.
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchh
Confidence 233689999986 4432222221 44456789999999888764 556799998 556665555555555555 89
Q ss_pred EeeecCCcce-ee---ecCCCcEEEecCCC
Q 014114 351 DSAFADKEVA-NA---AADAPMLEIQNGND 376 (430)
Q Consensus 351 ~~~~s~~g~~-~~---~~~d~~v~vw~~~~ 376 (430)
.++|+.++.+ +. ......|++|....
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecC
Confidence 9999999999 43 33334499998764
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00012 Score=70.09 Aligned_cols=200 Identities=15% Similarity=0.178 Sum_probs=124.6
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC-----eEEEEECCCC--
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKC-- 194 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~-- 194 (430)
..+.++.|+.+|.|.+.+-.+. .++-|.....+.|..+......++|++.+.|+ .|++|+++..
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred CCceEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3458999999999988874432 22334433333233333333446777766554 4999999642
Q ss_pred ----ceeee--ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC--CCc-ceEEeeecCCCeEEEE
Q 014114 195 ----EKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRR-PVMSFDFRETPIKAVA 265 (430)
Q Consensus 195 ----~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~-~~~~~~~~~~~i~~~~ 265 (430)
++++. +..+... ..+.++.+++. +.+-+.+|+|-.+|.|..+.-.- .+- ..........+|+.++
T Consensus 105 n~sP~c~~~~ri~~~~np----~~~~p~s~l~V--s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNP----TNPSPASSLAV--SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred CCCcceeeeeeeeccCCC----CCCCcceEEEE--EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 23311 1111111 11356777777 67788999999999999985321 111 1222223457999999
Q ss_pred eeCCCCEEEEEcCCCCEEEEEccCCeEEeE-EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 266 ~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
+..++..++....-..|.+|.+....+... +..| ..+++|..|++....+++++ +..+.+|+....++...
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEec-CceEEEEcCCCcceeee
Confidence 988887744444556799999974443333 5555 88999999998766565554 34699999876666555
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.33 E-value=0.00037 Score=63.84 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=116.7
Q ss_pred eeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee---CCCC--
Q 014114 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH-- 227 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~-- 227 (430)
++.+.+.. .++|++++.+ +=.++++|..+|.+.|.|++....++...... ..........++++.|.. ..|+
T Consensus 78 P~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 78 PLTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSE
T ss_pred chhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCccc
Confidence 45556655 7899999998 66699999999999999998888877632221 111111235677887742 2233
Q ss_pred -CEEEEEeCCCcEEEEECCC--CCcce----EEeeecCCCeEEEE-eeCC-----------------C---CEEEEEcCC
Q 014114 228 -RKFVAGTNDHQVRLYDTSA--QRRPV----MSFDFRETPIKAVA-EEPD-----------------S---FNIYIGNGS 279 (430)
Q Consensus 228 -~~l~~~~~dg~i~~wd~~~--~~~~~----~~~~~~~~~i~~~~-~s~~-----------------~---~~l~~~~~d 279 (430)
-.+++|+..|.+.+|.+.- +.... .....+.++|..|. ++.+ + .-+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 4688999999999998752 11111 11123455655554 3221 1 123444456
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEEEc-----CCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccc-eeEEEee
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-----PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN-EVVFDSA 353 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s-----~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~i~~~~ 353 (430)
..++++...+.+..++.... .-....+.+- ..+..|++-..+|.|++|.+...+.+..+.+....+ ..+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 77999999888776655432 2333344452 356678888899999999999999988866532211 1234567
Q ss_pred ecCCcceeeecCCCc---EEEecCCC
Q 014114 354 FADKEVANAAADAPM---LEIQNGND 376 (430)
Q Consensus 354 ~s~~g~~~~~~~d~~---v~vw~~~~ 376 (430)
++++|.++.-..... +.+|....
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv~~~~~ 339 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSVWGEGR 339 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEEES---
T ss_pred ECCCCCEEEEeCcccEEEEEEEccCC
Confidence 788888833333333 44555443
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=0.00016 Score=68.37 Aligned_cols=194 Identities=13% Similarity=0.085 Sum_probs=118.7
Q ss_pred CCCEEEEecC-CCeEEEEECCCCceeeeecCCCCC---CCC---cccCcceeE-----eEEeeCCCCCEEEEE-eCCCcE
Q 014114 173 SEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKN---SLG---IFTPTWFTS-----AAFLSIDDHRKFVAG-TNDHQV 239 (430)
Q Consensus 173 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~---~~~---~~~~~~v~~-----~~~~~~~~~~~l~~~-~~dg~i 239 (430)
+|++|+.-.. +..|...++...++-..+..+... -.. .....+|.+ +-+ +|+++.+... -..+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Pl--pnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPL--PNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCccccccc--CCCCCEeecccceeEEE
Confidence 6788887664 556777777665543333322111 000 111122222 112 4566555332 234567
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc----------------------------------------CC
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN----------------------------------------GS 279 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------------------------------------~d 279 (430)
.+.|..+.+ ....+.-. .....++++|+|.++++.+ .+
T Consensus 218 SvID~etme-V~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g 295 (635)
T PRK02888 218 TAVDAETME-VAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG 295 (635)
T ss_pred EEEECccce-EEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence 778877644 23333332 2445667777777776665 22
Q ss_pred CCEEEEEccC-----CeEEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce------------eeEEee
Q 014114 280 GDLASVDIRT-----GKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQL------------LSAVFL 341 (430)
Q Consensus 280 g~v~iwd~~~-----~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~------------~~~~~~ 341 (430)
+.|.+.|.++ .+.+..+.. ......+.++|||+++++++ .+.+|.|.|+.+.+. +..+.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 4577888877 345555554 56789999999999877665 689999999988653 333222
Q ss_pred ccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 342 KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 342 ~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+.-....+|.++|.. .+-.-|..|..|+...
T Consensus 374 ----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 ----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 112367799999887 7888899999999764
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=0.0017 Score=60.19 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=61.7
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
+..+.++++ +|+...|+.|+.||.|.+||...+ +..+....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 259 ~s~v~~ca~--sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 259 PSQVICCAR--SPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcceEEec--CcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 366889999 899999999999999999999864 2333344567889999999999999999999999998643
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.28 E-value=0.00049 Score=68.64 Aligned_cols=246 Identities=14% Similarity=0.118 Sum_probs=135.5
Q ss_pred CcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEE
Q 014114 49 HSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (430)
Q Consensus 49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
++.-.++++.| ..++.-++.+..+|.|.+-|..+......-. -...|.++.|.+... .++.
T Consensus 66 ~gd~~i~s~~f--l~d~~~i~v~~~~G~iilvd~et~~~eivg~---------vd~GI~aaswS~Dee--------~l~l 126 (1265)
T KOG1920|consen 66 DGDDEIVSVQF--LADTNSICVITALGDIILVDPETLELEIVGN---------VDNGISAASWSPDEE--------LLAL 126 (1265)
T ss_pred CCCcceEEEEE--ecccceEEEEecCCcEEEEcccccceeeeee---------ccCceEEEeecCCCc--------EEEE
Confidence 33445777777 6677778999999999999887654322111 124788888877555 7777
Q ss_pred EccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCC
Q 014114 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 129 ~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
.+..+++.+-.-.+.+-.. ..+.. +....+....+-|-...+.+= |+ .|.....+ .+...+.. .
T Consensus 127 iT~~~tll~mT~~f~~i~E----~~L~~-d~~~~sk~v~VGwGrkeTqfr-gs-~gr~~~~~-----~~~~ek~~----~ 190 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAE----KPLDA-DDERKSKFVNVGWGRKETQFR-GS-EGRQAARQ-----KIEKEKAL----E 190 (1265)
T ss_pred EeCCcEEEEEeccccchhc----ccccc-ccccccccceecccccceeee-cc-hhhhcccc-----cccccccc----c
Confidence 7777888777655443211 01100 000011112222222111111 10 11111111 11000000 0
Q ss_pred CcccCcceeEeEEeeCCCCCEEEEE-----eCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc---CCC
Q 014114 209 GIFTPTWFTSAAFLSIDDHRKFVAG-----TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSG 280 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg 280 (430)
.+...+.=+.+.| -.||.++++. .....|++||-. +. .-..-......-.+++|-|.|.++++-. .|+
T Consensus 191 ~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 191 QIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred chhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 0000123456788 7899998883 223799999987 22 1111112233456899999999888753 456
Q ss_pred CEEEEEccC---CeEEeEEeccccCcEEEEEEcCCCCEEEE---EeCCCeEEEEeCCCCc
Q 014114 281 DLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTLPIIAS---CGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 281 ~v~iwd~~~---~~~~~~~~~~~~~~v~~i~~s~~~~~l~s---~~~d~~v~iwd~~~~~ 334 (430)
.|.+|.-+- +.....+... ...|..++|+.++..|++ ......|++|-+.+..
T Consensus 267 ~IvffErNGL~hg~f~l~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cEEEEecCCccccccccCCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 788887532 2222223332 445999999999999887 4555569999887653
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=4.9e-05 Score=69.95 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=62.8
Q ss_pred ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 256 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
...+.+.+.+++|+...++.|+.||.|.+||...+..... .. .-.++.++|+|+|.++++|+.-|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 3567899999999999999999999999999976643322 22 45678999999999999999999999999854
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=0.00088 Score=55.41 Aligned_cols=142 Identities=16% Similarity=0.077 Sum_probs=99.7
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
...+++.|+..+.+...|..+|..+++.... ..+.+-+.. -+++++.|+..|.+++.+..++.+ ..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~-~w 87 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQ-IW 87 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEE---ECCEEEEEEccCcEEEEEecchhh-ee
Confidence 3578888999999999999999998875543 335444442 477899999999999999999865 55
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
.+..-..--......+++.+|..|+.|+..+..|.++..++++.+.. .+...+-+..|-...|..+...|.|.--.
T Consensus 88 ~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 88 NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceEEEEc
Confidence 55543322223345678999999999999999999999999887653 33334445556222344444445444333
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.18 E-value=0.00025 Score=51.00 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=69.3
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
+.|++|+.|..|+||+- .+.+..+... +.+.++..... ..|+.+..+|++-+|+
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---------~~v~~L~~~~~---------~~F~Y~l~NGTVGvY~------ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITET---------DKVTSLCSLGG---------GRFAYALANGTVGVYD------ 69 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEecc---------cceEEEEEcCC---------CEEEEEecCCEEEEEe------
Confidence 57999999999999973 5666666543 36766666543 3799999999999997
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcC-C--C-CEEEEecCCCeEE
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDI-S--E-KFSLFGGKGVEVN 187 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~dg~v~ 187 (430)
+..++|+......+.++.+.. + | ..|++|-.+|.|-
T Consensus 70 ------~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 ------RSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ------CcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 578899999888888887754 2 2 3688888888764
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.18 E-value=0.0034 Score=56.60 Aligned_cols=228 Identities=14% Similarity=0.160 Sum_probs=128.8
Q ss_pred CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc---------C-CeeEEEEeeeec
Q 014114 75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------K-GKASMRSIEVTK 144 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~-g~i~v~~~~~~~ 144 (430)
..|+|.|..+.+.+..+... ....+.++..+.-..... ....+++.|+. . |.+.++.+...+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-------~~E~~~s~~~~~l~~~~~-~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~ 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-------PNEHVTSLCSVKLKGDST-GKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-------TTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred cEEEEEeCCCCeEEEEEECC-------CCceEEEEEEEEEcCccc-cccCEEEEEecccccccccccCcEEEEEEEEccc
Confidence 35888888888877766652 223555666555332000 01236666643 2 889999887641
Q ss_pred ccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
. .......+......++|.+++-- ++. |+++. .+.|.+|++...+ .......+. +..+.++..
T Consensus 74 ~---~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~--------~~~i~sl~~-- 137 (321)
T PF03178_consen 74 E---NNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDS--------PFYITSLSV-- 137 (321)
T ss_dssp -------EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-B--------SSSEEEEEE--
T ss_pred c---cceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecc--------eEEEEEEec--
Confidence 0 00112223344457889888766 444 44333 3689999998777 433322211 134667766
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEee--ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC-------C--eE
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------G--KL 292 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~-------~--~~ 292 (430)
.++++++|.....+.++..+.....+..+. .....++++.|-++++.++++..+|.+.++.... + ++
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 366999999888888875543222122222 2345688888886767999999999999987752 1 23
Q ss_pred EeEEeccccCcEEEE---EEcCC--C------CEEEEEeCCCeEEEE
Q 014114 293 LGCFIGKCSGSIRSI---ARHPT--L------PIIASCGLDSYLRFW 328 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i---~~s~~--~------~~l~s~~~d~~v~iw 328 (430)
.....-|....|+++ .+.|. + ..++.++.+|.|.+.
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 333333335678887 55552 2 247778888888844
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00025 Score=67.92 Aligned_cols=279 Identities=10% Similarity=0.015 Sum_probs=150.3
Q ss_pred CCCCceEEEEc----cCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEE
Q 014114 62 SQNDPLLAVAR----KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM 137 (430)
Q Consensus 62 ~p~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v 137 (430)
+|..+++++++ ..|.|.||- .+|++...+... -..++++|.+..- .|+.+-.-|.+.+
T Consensus 24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---------~hatSLCWHpe~~--------vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---------VHATSLCWHPEEF--------VLAQGWEMGVSDV 85 (1416)
T ss_pred CCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---------eehhhhccChHHH--------HHhhccccceeEE
Confidence 77788888765 458899984 577754433220 1344577776544 6777778888999
Q ss_pred EEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee------------------ee
Q 014114 138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------------------WT 199 (430)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~------------------~~ 199 (430)
|....... ......|..+|..+.|+++|..++++..-|.|.+|.......+ ..
T Consensus 86 ~~~~~~e~---------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfR 156 (1416)
T KOG3617|consen 86 QKTNTTET---------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFR 156 (1416)
T ss_pred EecCCcee---------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEe
Confidence 97653321 2223457789999999999999999999999999987631111 11
Q ss_pred ecCCCCCC------------CCcc-cCcce-----eEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 200 AKPPPKNS------------LGIF-TPTWF-----TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 200 ~~~~~~~~------------~~~~-~~~~v-----~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
+....... ..+. ..+|- .++.-...|+|..|+.++.+|+|+..|-.... .......+ .
T Consensus 157 L~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~--~~V~k~dS-~- 232 (1416)
T KOG3617|consen 157 LSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQ--RTVHKLDS-E- 232 (1416)
T ss_pred cCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcE--EEEEEccc-h-
Confidence 11110000 0000 00010 01111124677888888999999888865422 22222110 0
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEcc-C----------------------------C----eEEeEEeccccCcEEEEE
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIR-T----------------------------G----KLLGCFIGKCSGSIRSIA 308 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~-~----------------------------~----~~~~~~~~~~~~~v~~i~ 308 (430)
..+-|.+...-+++--.+-++.++-.. + | ...+.+. ....++|++
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e--~ge~~~c~c 310 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLE--LGEGILCMC 310 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhh--cCCceEEEE
Confidence 111122211111111111111111100 0 0 0111111 145799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC-C---C---ceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEec
Q 014114 309 RHPTLPIIASCGLDSYLRFWDIK-T---R---QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 309 ~s~~~~~l~s~~~d~~v~iwd~~-~---~---~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~ 373 (430)
++..+..|+.|...|.+.+|--. . | .-...+.-.....+.|..+.|.|-...+.......|.+..
T Consensus 311 Y~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~ 382 (1416)
T KOG3617|consen 311 YGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG 382 (1416)
T ss_pred EeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec
Confidence 99999999999999999999532 2 1 1222221122233447889999866554333333444433
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00047 Score=60.42 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=123.6
Q ss_pred EEEeccCCCCCCc-eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC
Q 014114 54 VLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
+-.+++ +|... +|..++.+..|+|.|+++.-.+..+..+. .+.+.+|--+. .+.+.+|..+
T Consensus 196 Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~---------~~wSC~wDlde-------~h~IYaGl~n 257 (463)
T KOG1645|consen 196 IRDLAF--SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN---------QIWSCCWDLDE-------RHVIYAGLQN 257 (463)
T ss_pred hhhhcc--CccccceeeeeccCceEEEEecccceeeeheeccC---------CceeeeeccCC-------cceeEEeccC
Confidence 334444 44444 68889999999999999988887777643 55555554332 3489999999
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE------EcCCCCEEEEecCCCeEEEEECCCC----ceeeeecC
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLDKC----EKIWTAKP 202 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~ 202 (430)
|.|.|||+......-...... ....+|..++ ..+.+.+|+....+ +..|++.-. -++..+.
T Consensus 258 G~VlvyD~R~~~~~~~e~~a~------~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele- 328 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGPLMELVAN------VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE- 328 (463)
T ss_pred ceEEEEEccCCCchHhhhhhh------hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-
Confidence 999999998765321110000 0112233322 22344455544332 455654321 1111111
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-------cEEE-EECCCCCcceEE-eeec-CC------CeEEEEe
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRL-YDTSAQRRPVMS-FDFR-ET------PIKAVAE 266 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~~-wd~~~~~~~~~~-~~~~-~~------~i~~~~~ 266 (430)
.++.+.++.+ .+..+.++...... .|-. -|-..+. ++.. -..+ .. .-..+.-
T Consensus 329 ---------~pG~cismqy--~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~~Gs~~~kl~t~~ai~~ 396 (463)
T KOG1645|consen 329 ---------PPGICISMQY--HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTYFGSKQTKLSTTQAIRA 396 (463)
T ss_pred ---------CCcceeeeee--cCccceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccccCCcccccccccceec
Confidence 1234445555 33333333322210 0000 0111111 1110 0111 00 0011111
Q ss_pred eCCCCEEEE-EcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC-C-CEEEEEeCCCeEEEEeCC
Q 014114 267 EPDSFNIYI-GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-L-PIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 267 s~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~-~-~~l~s~~~d~~v~iwd~~ 331 (430)
.++.++|+. |...+.+.+||..+.+.++++.. ..+|..++.... + .+|++-. |..++||..+
T Consensus 397 ~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 397 VEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cccccEEEEecCCcceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 244455544 44557899999999999999887 578888876552 3 4555554 5668888654
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=7.6e-05 Score=69.85 Aligned_cols=198 Identities=11% Similarity=0.137 Sum_probs=116.8
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
..|.--+++..+.+++.|+.-|.|++|+-..++....-.... ...+..+.. +++..++|.|+..|.|.++
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~--------~~~~~~~~v--s~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA--------TGITCVRSV--SSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCc--------cceEEEEEe--cchhHhhhhhcCCceEEee
Confidence 344444566688999999999999999987765432221111 022333444 7888999999999999999
Q ss_pred ECCCCCcceEEe-----eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe----EEeEEeccccCcEEEEEEcCCC
Q 014114 243 DTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 243 d~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
-+.....+-..+ ..|...|++++|++++..+++|...|.|.+-.+.+.. ..+.+... .+.|..+... ++
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~-q~ 181 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYL-QS 181 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeecc-cc
Confidence 887633222111 1267789999999999999999999999988876621 12222222 5677777663 33
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC----cce-eeecCCCcEEEecCCC
Q 014114 314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK----EVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 314 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~-~~~~~d~~v~vw~~~~ 376 (430)
.+|++... . ..+++++... +..+--+...+..-...+|-|. .+- +.++.. ..++|..+-
T Consensus 182 ~LLVStl~-r-~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP-G~RlWead~ 245 (726)
T KOG3621|consen 182 YLLVSTLT-R-CILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP-GLRLWEADF 245 (726)
T ss_pred eehHhhhh-h-hheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecC-CCceEEeec
Confidence 34444332 2 3345544332 1111111111111244455544 122 444443 357777764
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00018 Score=68.87 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=82.6
Q ss_pred EEEEcCCCCEEEEec----CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 167 FSKVDISEKFSLFGG----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
-.+|+|...++++++ ..|.|-|| ..+|++..... .|-.+++++| +|..-.|+.|=.-|.+.+|
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt----------~P~hatSLCW--Hpe~~vLa~gwe~g~~~v~ 86 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT----------YPVHATSLCW--HPEEFVLAQGWEMGVSDVQ 86 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc----------cceehhhhcc--ChHHHHHhhccccceeEEE
Confidence 346888888888765 35677777 34555332222 2345778999 7888889999899999999
Q ss_pred ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc
Q 014114 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~ 288 (430)
...+.+. ......|..+|..+.||++|..++++..-|.|.+|...
T Consensus 87 ~~~~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ecCCcee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9987543 44455689999999999999999999999999999765
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00025 Score=69.56 Aligned_cols=204 Identities=15% Similarity=0.144 Sum_probs=123.2
Q ss_pred CCEEEEe-cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee---CCCCCEEEEEeCCCcEEEEECCCCCc
Q 014114 174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 174 ~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
.++|+.. ...+.|+-.|++.|+.+.....+... .|..++-.. .-.....+.|-.+..+..||+|-...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~--------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI--------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc--------ceeEecccccccccCCCceEEEECCCceEEeccCCCCC
Confidence 3444433 45678999999999999888776422 122221100 00123456677888999999996432
Q ss_pred ceEEeee----cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeE
Q 014114 250 PVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 250 ~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v 325 (430)
.+..-.. .....+|++-+.+| +||+|+.+|.||+||--..+....+.+- ..+|.+|..+.||++|++.+ +..+
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyL 641 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYL 641 (794)
T ss_pred ceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceE
Confidence 2222122 23467788887777 8999999999999995332333345565 78999999999999987776 4567
Q ss_pred EEEeCC--CCc-----------------eeeEEeecc-cc--------cee-EEEeeecC----CcceeeecCCCcEEEe
Q 014114 326 RFWDIK--TRQ-----------------LLSAVFLKQ-HL--------NEV-VFDSAFAD----KEVANAAADAPMLEIQ 372 (430)
Q Consensus 326 ~iwd~~--~~~-----------------~~~~~~~~~-~~--------~~~-i~~~~~s~----~g~~~~~~~d~~v~vw 372 (430)
.|++.. .|+ ....+.+.. |. ..+ -+...|+. ....++++....+.+|
T Consensus 642 lLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~W 721 (794)
T PF08553_consen 642 LLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTW 721 (794)
T ss_pred EEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEE
Confidence 777752 111 111111211 11 111 23344542 2223778888899999
Q ss_pred cCCCCCCccccccccc
Q 014114 373 NGNDTQEDATETLPVK 388 (430)
Q Consensus 373 ~~~~~~~~~~~~~~~~ 388 (430)
+...........+.++
T Consensus 722 nf~kV~~g~~~~Y~ik 737 (794)
T PF08553_consen 722 NFKKVKRGKKDPYQIK 737 (794)
T ss_pred EHHHHhCCCCCceEEE
Confidence 9876555444444433
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.0075 Score=54.38 Aligned_cols=183 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCEEEEecC----------CCeEEEEECCCC----ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcE
Q 014114 174 EKFSLFGGK----------GVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 174 ~~~l~~~~~----------dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 239 (430)
..+|++|+. .|.|.++++... ..+..+.... ..+.|++++-. .+. |+++ ..+.|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~---~~~-lv~~-~g~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF---NGR-LVVA-VGNKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE---TTE-EEEE-ETTEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh---CCE-EEEe-ecCEE
Confidence 567776643 288999999884 2222221111 12668888873 444 4444 35789
Q ss_pred EEEECCCCCcceEEeee--cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC-CeEEeEEe-ccccCcEEEEEEcCCCCE
Q 014114 240 RLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFI-GKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~-~~~~~~v~~i~~s~~~~~ 315 (430)
.+|++...+. +..... ....+.++... +++|++|.....+.++..+. ...+..+. ......++++.|-+++..
T Consensus 110 ~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 110 YVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp EEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred EEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE
Confidence 9999987652 222222 23356666554 55999999888888875543 33232222 222556889999866679
Q ss_pred EEEEeCCCeEEEEeCCC-------Cc-eeeEEeeccccceeEEEe---eecCC--c------c-eeeecCCCcEEEe
Q 014114 316 IASCGLDSYLRFWDIKT-------RQ-LLSAVFLKQHLNEVVFDS---AFADK--E------V-ANAAADAPMLEIQ 372 (430)
Q Consensus 316 l~s~~~d~~v~iwd~~~-------~~-~~~~~~~~~~~~~~i~~~---~~s~~--g------~-~~~~~~d~~v~vw 372 (430)
++.+..+|.+.++.... +. .+... ..-|.+..++++ .+.|. + . .+.++.+|.|.+.
T Consensus 187 ~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~-~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI-SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE-EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEcCCCeEEEEEECCCCcccccccccceeE-EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99999999999998753 22 22221 223445556666 55552 1 1 4778888888744
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.92 E-value=6.5e-05 Score=70.30 Aligned_cols=117 Identities=7% Similarity=0.017 Sum_probs=90.5
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE-
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL- 292 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~- 292 (430)
..+.--++ +..+++++.|+.-|.+++|+-..++.......+....+..+.++++..++|+|+..|.|.++-+....+
T Consensus 34 ~~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEe--ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 33444444 457899999999999999998876654444545556777788899999999999999999998875332
Q ss_pred ----EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 293 ----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 293 ----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+..+...|...|++++|++++..+++|..-|.|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2222222378999999999999999999999999988876
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0072 Score=55.77 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC---CCcEE
Q 014114 165 IAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVR 240 (430)
Q Consensus 165 i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~ 240 (430)
-..+++++.+..++ ....++.|.+.|..+.......... .....+++ +++++.+.++.. ++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG----------~~P~~~~~--~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG----------LGPVGLAV--DPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec----------cCCceEEE--CCCCCEEEEEecccCCceEE
Confidence 34677888777554 4445688999998777666655432 12456777 788877777665 68899
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEe-E----EeccccCcEEEEEEcCCCC
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~-~----~~~~~~~~v~~i~~s~~~~ 314 (430)
+.|..+... .........+ ..++++|+|+.+++.. .++.|.+.|........ . +.. ......+.++|+|.
T Consensus 144 vid~~t~~~-~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~ 219 (381)
T COG3391 144 VIDAATNKV-TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGN 219 (381)
T ss_pred EEeCCCCeE-EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCC
Confidence 999888654 4444433345 8899999999776665 77899999987665553 1 211 33457789999998
Q ss_pred EEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 315 IIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 315 ~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
.+...... +.+...|..++.........+. . ....+.++|+|.. +.-...+.+.+-+...
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 76655433 5899999998887775222222 1 2367799999999 3334456777766554
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.2e-05 Score=69.58 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=78.3
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeE-EEEeeCCCCEEEEEcCCCCEEEEEccCCeE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
..+.-+.| +|.-.++|.+..+|.|.+..++. ++ +..+..|...++ +++|.|||+.|++|-.||+|++.|+.++..
T Consensus 21 ~~i~~~ew--nP~~dLiA~~t~~gelli~R~n~-qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEW--NPKMDLIATRTEKGELLIHRLNW-QR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEE--cCccchhheeccCCcEEEEEecc-ce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 44777888 88999999999999999999884 43 788887777777 999999999999999999999999999988
Q ss_pred EeEEeccccCcEEEEEEcC
Q 014114 293 LGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~s~ 311 (430)
+..+.......|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7773322266788888863
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.90 E-value=0.014 Score=51.35 Aligned_cols=232 Identities=14% Similarity=0.105 Sum_probs=126.5
Q ss_pred CCceEEEEccCCeEEEeccC-CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 64 NDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
.++.|+.|+.+| |.+++.. ..+.....+. ..|..+...+... .+++ -.|+.+.++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~~~~--------~llv-Lsd~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLPELN--------LLLV-LSDGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEecccC--------EEEE-EcCCccEEEEchh
Confidence 456799999988 8899883 2333333322 2477777766443 4433 3459999999865
Q ss_pred ecccccCCcce-----eeEEeeccCCceEEEE--EcCCCCEEEEecCCCeEEEEECCCC-----ceeeeecCCCCCCCCc
Q 014114 143 TKVSAESSCST-----VKSWNVCASGTIAFSK--VDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGI 210 (430)
Q Consensus 143 ~~~~~~~~~~~-----i~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~ 210 (430)
-.......... ...........+..++ -...+...++......|.+|.+... ....++..
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-------- 137 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-------- 137 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--------
Confidence 44322110000 0001111223344444 1223333444444558888877653 23333333
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec------------CCCeEEEEeeCCCCEEEEEcC
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------------ETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~ 278 (430)
+..+.+++|. ++.|+.|..+ ...+.|+.++.. ...+... ..++..+.. +++.+|++-
T Consensus 138 --p~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 138 --PDPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred --CCCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 2568889993 6677777654 478889986442 2222111 123444444 344555543
Q ss_pred CCCEEEEEccCCeEEe--EEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEe
Q 014114 279 SGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 340 (430)
+..-.+.|. .|+..+ .+.- ...+.++++ ..++|+..+. +.|-||++.++++++.+.
T Consensus 207 ~~~g~fv~~-~G~~~r~~~i~W--~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 207 DNIGVFVNK-NGEPSRKSTIQW--SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cceEEEEcC-CCCcCcccEEEc--CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333334454 454333 3332 335566666 4567777765 559999999999999864
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00092 Score=61.92 Aligned_cols=178 Identities=12% Similarity=0.029 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCEEEEe---cCC-CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCC
Q 014114 163 GTIAFSKVDISEKFSLFG---GKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH 237 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg 237 (430)
..+..-+|+|++..++.. ... ..++++++.+++....+... ..-..-.| +||++.|+.+. .||
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----------g~~~~P~f--spDG~~l~f~~~rdg 260 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----------GNNGAPAF--SPDGSKLAFSSSRDG 260 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC----------CccCCccC--CCCCCEEEEEECCCC
Confidence 345666788888765543 222 46999999887765544421 12233466 89998876654 455
Q ss_pred --cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-CC--EEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 238 --~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
.|+++|+.... ...+....+.-..-.|+|||++|+..+.. |. |.++|+..... ..+... ...-..-.|+||
T Consensus 261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~-~~~~~~p~~Spd 336 (425)
T COG0823 261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS-GGGNSNPVWSPD 336 (425)
T ss_pred CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc-CCCCcCccCCCC
Confidence 46677777644 33344433344467899999998877643 43 66777765544 233222 222237789999
Q ss_pred CCEEEEEeCC-Ce--EEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 313 LPIIASCGLD-SY--LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 313 ~~~l~s~~~d-~~--v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
|++|+..+.. |. |.+.|+.++..+..+....+ .....|.++|..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~----~e~ps~~~ng~~ 383 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL----NESPSWAPNGRM 383 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEcccccc----CCCCCcCCCCce
Confidence 9998877743 44 77777776664443222222 234578888877
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=5e-06 Score=76.59 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=119.9
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEec----CCCeEEEEECCCCce--
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG----KGVEVNVWDLDKCEK-- 196 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~v~iwd~~~~~~-- 196 (430)
..+..|..+|.|.+-.+....+.+ ..+...+....++++|++ +.+.||.|- .|..+.|||+.++-.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs-------~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSS-------AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred hhhhhccccCceEEeecCCccccc-------ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 377888888999888876544321 112223446788999988 566777663 356699999987522
Q ss_pred e--eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEE
Q 014114 197 I--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNI 273 (430)
Q Consensus 197 ~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 273 (430)
. ..+.. .......+++| -.+.+++++|.....+.++|++... .......+..+..+.+.| .+.++
T Consensus 144 ke~~~fs~--------~~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 144 KESPLFSS--------STLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccccc--------ccccCcccccc--ccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCce
Confidence 1 11111 01134557788 5788899999999999999998422 222222334667777888 66677
Q ss_pred EEEcCCCCEEEEE-ccCCe-EEeEEecc---ccCcEEEEEEcCCCC-EEEEEeC-CCeEEEEeCC
Q 014114 274 YIGNGSGDLASVD-IRTGK-LLGCFIGK---CSGSIRSIARHPTLP-IIASCGL-DSYLRFWDIK 331 (430)
Q Consensus 274 ~~~~~dg~v~iwd-~~~~~-~~~~~~~~---~~~~v~~i~~s~~~~-~l~s~~~-d~~v~iwd~~ 331 (430)
++-. ||.|-+|| .+.-+ ++..+... ....+..++|+|... .+++.+. .++|+++|+.
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7664 99999999 33322 22222111 023489999999643 4556554 4789999985
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.84 E-value=0.032 Score=53.72 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=112.6
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCC--CCce-EEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE--DDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
..|++++.++.|.-.|..+|+.+..+..-.+....+. ...+ ..+.+ .++.++.++.++.+...|...
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----------~~~~v~v~t~dg~l~ALDa~T 139 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----------YDGKVFFGTLDARLVALDAKT 139 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----------ECCEEEEEcCCCEEEEEECCC
Confidence 4578888889999999999999888764211110000 0000 00111 123677777788777777654
Q ss_pred ecccccCCcceeeEEeeccCCc--eEEEEEcC--CCCEEEEec------CCCeEEEEECCCCceeeeecCCCCCCC----
Q 014114 143 TKVSAESSCSTVKSWNVCASGT--IAFSKVDI--SEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKNSL---- 208 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~--i~~~~~~~--~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~---- 208 (430)
... +|+...... -..+.-+| .+..++++. .+|.|..+|..+|+.++.+........
T Consensus 140 Gk~----------~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 140 GKV----------VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred CCE----------EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 331 333221100 00111122 123445443 368999999999999988765322100
Q ss_pred -------Cc---------c--cCcce-eEeEEeeCCCCCEEEEEeCC-----C-----------cEEEEECCCCCcceEE
Q 014114 209 -------GI---------F--TPTWF-TSAAFLSIDDHRKFVAGTND-----H-----------QVRLYDTSAQRRPVMS 253 (430)
Q Consensus 209 -------~~---------~--~~~~v-~~~~~~~~~~~~~l~~~~~d-----g-----------~i~~wd~~~~~~~~~~ 253 (430)
.. . ....+ ..+++ ++...+++.+..+ + .|.-.|+++++. ...
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~--D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~ 286 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSY--DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWH 286 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeE--cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEe
Confidence 00 0 00111 12355 5666666666522 2 566778888763 444
Q ss_pred eee--cC-------CCeEEEEeeCCCC---EEEEEcCCCCEEEEEccCCeEE
Q 014114 254 FDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 254 ~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
++. |. ....-+.+..+|+ .++.+..+|.+.+.|.++++++
T Consensus 287 ~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 287 YQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 443 21 1111222334665 7788999999999999999886
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00011 Score=68.00 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=76.8
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
..+..+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-+ ...++ +++|.|||++|+.|=.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 467889999999999999999999999997 7888888866 55666 99999999999999999999999999998887
Q ss_pred EEeeccccceeEEEeeec
Q 014114 338 AVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s 355 (430)
... ......|..+-|+
T Consensus 99 ~~~--~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFL--FSVETDISKGIWD 114 (665)
T ss_pred ccc--cccccchheeecc
Confidence 731 1223335666665
No 350
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.0058 Score=51.52 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=73.7
Q ss_pred CceEEEEEcCCC-CEEEEecCCCe-EEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC----
Q 014114 163 GTIAFSKVDISE-KFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---- 236 (430)
Q Consensus 163 ~~i~~~~~~~~~-~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---- 236 (430)
..-..++|+|.. .-++.+-.-|+ ..++|....+....+.......+ .-.-.| +|||.+|+..-.|
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf-------yGHGvf--s~dG~~LYATEndfd~~ 138 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF-------YGHGVF--SPDGRLLYATENDFDPN 138 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee-------eccccc--CCCCcEEEeecCCCCCC
Confidence 344567788743 44555555554 67889988877766655443321 223356 8999998876443
Q ss_pred -CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 237 -HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 237 -g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
|.|-+||.+.+-+.+..+..|.-.-..+.|.+||+.|+.+.
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 68999999976555777777877778899999999988764
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.032 Score=51.98 Aligned_cols=208 Identities=16% Similarity=0.069 Sum_probs=107.6
Q ss_pred eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceee
Q 014114 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK 155 (430)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~ 155 (430)
.|.||+. .|+++..+.-- . +.+.++.|... ..|+....+|.++++++.....- +....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~-------~-~~iv~~~wt~~---------e~LvvV~~dG~v~vy~~~G~~~f--sl~~~i~ 121 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWD-------S-GRIVGMGWTDD---------EELVVVQSDGTVRVYDLFGEFQF--SLGEEIE 121 (410)
T ss_pred EEEEECC-CCCEeEEEEEC-------C-CCEEEEEECCC---------CeEEEEEcCCEEEEEeCCCceee--chhhhcc
Confidence 5999986 78887776541 1 58888888653 36888899999999997422200 0000111
Q ss_pred EEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCcceeE-eEEeeCCCCCEEEEE
Q 014114 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG 233 (430)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~ 233 (430)
...+ ....+....+..+|-.++ ..++.+.+.+-.... ....+.................. ..+ +.+....+..
T Consensus 122 ~~~v-~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~ 196 (410)
T PF04841_consen 122 EEKV-LECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILL 196 (410)
T ss_pred ccCc-ccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe--ecCcceEEEE
Confidence 1110 011122223333443333 334444444322211 11111110000000000000111 122 3445555555
Q ss_pred eCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC
Q 014114 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
..++.+.+.+....+ .+. ..+++..+++||++++||.-..+|.+.+.+..-.+.+..+..........|.|.-+.
T Consensus 197 ~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 197 ANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 556666655443311 122 236899999999999999999999999988766666666654324566677775543
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.009 Score=55.68 Aligned_cols=141 Identities=10% Similarity=0.048 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
.....+.++|+++++++ ..+|.-.+|.......... +......| .+ .+.+|+-.....|.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--------------G~g~~~vw--~~-~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--------------GSGLSFVW--SS-RNRYAVLESSSTIKIY 94 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--------------EE-SEEEE---T-SSEEEEE-TTS-EEEE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--------------CceeEEEE--ec-CccEEEEECCCeEEEE
Confidence 34678999999999998 5566777776332222111 22455677 45 4456776778889997
Q ss_pred ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC
Q 014114 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
.--... ....+... ..+..|-. |.+|+..+.+ .|.+||..+++.+..+... +|..+.|++++.+++..+.+
T Consensus 95 kn~~~~-~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 95 KNFKNE-VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp ETTEE--TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred EcCccc-cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence 432212 12233321 23444432 7777777555 7999999999999999753 48999999999999988865
Q ss_pred CeEEEEeCC
Q 014114 323 SYLRFWDIK 331 (430)
Q Consensus 323 ~~v~iwd~~ 331 (430)
.+.|++..
T Consensus 166 -~i~il~~~ 173 (443)
T PF04053_consen 166 -SIYILKYN 173 (443)
T ss_dssp -SEEEEEE-
T ss_pred -eEEEEEec
Confidence 57777643
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.75 E-value=0.025 Score=49.79 Aligned_cols=194 Identities=15% Similarity=0.132 Sum_probs=114.3
Q ss_pred EEEEcCCCCEEEEe--cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEEC
Q 014114 167 FSKVDISEKFSLFG--GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 167 ~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~ 244 (430)
.++++.+++++++. +-...|.+.|+...+.+.++..+. ..+.| |.+ +..|.+-|.||.+....+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------C~~iy-P~~-~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------------CWLIY-PSG-NRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------------EEEEE-EEE-TTEEEEEETTSCEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------------EEEEE-ecC-CCceEEEecCCceEEEEE
Confidence 34667777777754 344568888888888887776532 11223 233 345778889999999988
Q ss_pred CCCCcceEEee----ecCCCeE-EEEeeCCCCEEEEEcCCCCEEEEEccCCeE--EeEEecc---------ccCcEEEEE
Q 014114 245 SAQRRPVMSFD----FRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGK---------CSGSIRSIA 308 (430)
Q Consensus 245 ~~~~~~~~~~~----~~~~~i~-~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~---------~~~~v~~i~ 308 (430)
....+...... ....++. .-++...+..++--+.+|.|+-.|+..... ...+.-. ..+...-++
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 85333232211 1122222 334444555565577889888888865432 2222210 122334467
Q ss_pred EcCCCCEEEEEeC---CC-------eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e-e-ecCCCcEEEecCC
Q 014114 309 RHPTLPIIASCGL---DS-------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N-A-AADAPMLEIQNGN 375 (430)
Q Consensus 309 ~s~~~~~l~s~~~---d~-------~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~-~-~~~d~~v~vw~~~ 375 (430)
+++....|+.... ++ .|-++|+.+++.+.++.+... +.++..+.+..= + + ...++.|.+||..
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~----~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP----IDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----ESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----cceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 8776655544322 22 588889999999999766443 567788887663 3 3 3567899999987
Q ss_pred CCC
Q 014114 376 DTQ 378 (430)
Q Consensus 376 ~~~ 378 (430)
...
T Consensus 321 tGk 323 (342)
T PF06433_consen 321 TGK 323 (342)
T ss_dssp T--
T ss_pred CCc
Confidence 743
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.04 Score=51.49 Aligned_cols=217 Identities=11% Similarity=0.023 Sum_probs=109.8
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
...+++ +|+|+++++ ..||.-.|+.....+....-.+ ....|.. . +.+++-...+
T Consensus 35 p~~ls~--npngr~v~V-~g~geY~iyt~~~~r~k~~G~g-------------~~~vw~~-~--------n~yAv~~~~~ 89 (443)
T PF04053_consen 35 PQSLSH--NPNGRFVLV-CGDGEYEIYTALAWRNKAFGSG-------------LSFVWSS-R--------NRYAVLESSS 89 (443)
T ss_dssp -SEEEE---TTSSEEEE-EETTEEEEEETTTTEEEEEEE--------------SEEEE-T-S--------SEEEEE-TTS
T ss_pred CeeEEE--CCCCCEEEE-EcCCEEEEEEccCCcccccCce-------------eEEEEec-C--------ccEEEEECCC
Confidence 345556 778888888 5678888887433332222211 2244544 2 2577666678
Q ss_pred eeEEE-EeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 134 KASMR-SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 134 ~i~v~-~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
.+.|+ ++.... ++..... ..+..+-. |.+|+..+.+ .|.+||+.+++.+..+...
T Consensus 90 ~I~I~kn~~~~~---------~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--------- 145 (443)
T PF04053_consen 90 TIKIYKNFKNEV---------VKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--------- 145 (443)
T ss_dssp -EEEEETTEE-T---------T-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----------
T ss_pred eEEEEEcCcccc---------ceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---------
Confidence 88885 332111 1111211 12222322 6777766555 8999999999999998753
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC----------CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
.|..+.| ++++++++..+.+ .+.+++.... +..+..+..-...|.+.+|..+ .|+-.+.. .+
T Consensus 146 --~vk~V~W--s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~l 217 (443)
T PF04053_consen 146 --AVKYVIW--SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HL 217 (443)
T ss_dssp --E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EE
T ss_pred --CCcEEEE--ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eE
Confidence 3788999 8899999988755 6777765532 0123333332568888888765 33333333 55
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
+. +..|+.- .+..- ..++.=+...+....+.....|+.|..+.+.
T Consensus 218 kY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 218 KY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 55 3344331 12211 4456666676766677777777777777654
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.72 E-value=0.062 Score=53.26 Aligned_cols=332 Identities=12% Similarity=0.027 Sum_probs=173.9
Q ss_pred CCCcccCCCCCCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEec
Q 014114 2 PRTTTLECPGCPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILN 81 (430)
Q Consensus 2 ~~~~~~~~~~~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd 81 (430)
||...+.+-......|+++..||.+.-+-++.. .+...-.+.-.-...++..-.|... .+.++.+.+ |.-..+|.
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~-tg~lsd~Kk~~lGt~P~~Lr~f~sk---~~t~vfa~s-drP~viY~ 657 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDIN-TGQLSDRKKVTLGTQPISLRTFSSK---SRTAVFALS-DRPTVIYS 657 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcc-cceEccccccccCCCCcEEEEEeeC---CceEEEEeC-CCCEEEEe
Confidence 555555555555566888889999988866642 1111111111112233334444432 223444443 34444554
Q ss_pred cCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc
Q 014114 82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~ 161 (430)
. +++++..--... .+..++-++... ....++.+ ..+.+.+.-++.-... .++. +.-
T Consensus 658 ~-n~kLv~spls~k---------ev~~~c~f~s~a-----~~d~l~~~-~~~~l~i~tid~iqkl------~irt--vpl 713 (1096)
T KOG1897|consen 658 S-NGKLVYSPLSLK---------EVNHMCPFNSDA-----YPDSLASA-NGGALTIGTIDEIQKL------HIRT--VPL 713 (1096)
T ss_pred c-CCcEEEeccchH---------Hhhhhccccccc-----CCceEEEe-cCCceEEEEecchhhc------ceee--ecC
Confidence 3 455443221111 111122222111 11233333 3344555544322211 1121 233
Q ss_pred CCceEEEEEcCCCCEEEEecC-----------C---CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-
Q 014114 162 SGTIAFSKVDISEKFSLFGGK-----------G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD- 226 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~-----------d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 226 (430)
+.....+++.+....+.+.+. . ..++++|-++.+.+...+....+. ...+.++.|. .|
T Consensus 714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~~--~d~ 786 (1096)
T KOG1897|consen 714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKFT--DDP 786 (1096)
T ss_pred CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeeec--CCC
Confidence 444555666653333333221 1 136777777766554433322111 1345666684 34
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCCcceEEeeec--CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEe
Q 014114 227 HRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294 (430)
Q Consensus 227 ~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 294 (430)
+.++++|+. .|.|.+|......+ +.....+ .+.+.++.. -+|+++|. -...|++|+..+.+.++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELR 862 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceeh
Confidence 667777753 46777777765332 3322222 345555443 25555543 55679999998887776
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
.-..+ ..++..+...-.+..++.|..=+.+.+.-.+ .|..... .+.-.....+++.+-.+..++.+..+|.+.+-
T Consensus 863 ~e~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev--ArD~~p~Wmtaveil~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 863 IECNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV--ARDYNPNWMTAVEILDDDTYLGAENSGNLFTV 939 (1096)
T ss_pred hhhcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe--ehhhCccceeeEEEecCceEEeecccccEEEE
Confidence 66666 7889999998899999999877766655443 3334332 23333445677888778778888888888887
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
..+.
T Consensus 940 ~~d~ 943 (1096)
T KOG1897|consen 940 RKDS 943 (1096)
T ss_pred EecC
Confidence 7664
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.70 E-value=0.00018 Score=41.06 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=33.9
Q ss_pred CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
++++..+..| ...|.++.|++.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3556667776 88999999999999999999999999996
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.045 Score=50.97 Aligned_cols=183 Identities=13% Similarity=0.004 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
+.|.++.|+.+. .|++...||.+++||+. |+....+.. ......+. ...+....+ ..+| ++.-..++.+.+.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~-~i~~~~v~-e~~i~~~~~--~~~G--ivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGE-EIEEEKVL-ECRIFAIWF--YKNG--IVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cceeechhh-hccccCcc-ccccccccc--CCCC--EEEECCCCeEEEE
Confidence 789999998754 55567799999999986 333222111 11100100 011212222 1233 3333345555444
Q ss_pred ECCCCCcceEEee---e-----cCC-CeEE-EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 243 DTSAQRRPVMSFD---F-----RET-PIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 243 d~~~~~~~~~~~~---~-----~~~-~i~~-~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
.-.........+. . +.. .... ..++.+....+....++.+.+.+....+. +.. .+++..|++||+
T Consensus 153 ~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~--~~~i~~iavSpn 227 (410)
T PF04841_consen 153 NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS--DGPIIKIAVSPN 227 (410)
T ss_pred eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC--CCCeEEEEECCC
Confidence 3222110011110 0 000 0000 22333444444444445555443322111 222 468999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+++||.-..+|.+.+.+..-.+.+..+... .......+.|.-++..
T Consensus 228 g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 228 GKFIALFTDSGNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCEEEEEECCCCEEEEECcccceeEEeecC--cCCCCcEEEEECCCcE
Confidence 999999999999999876555555553332 2223456667665544
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.68 E-value=1.8e-05 Score=73.05 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=140.0
Q ss_pred ceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee-eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE
Q 014114 51 SKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (430)
Q Consensus 51 ~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
.+.|++..+ .-+..++++|..+|.|.+-.......- ..+. .+...+..+++|..... +.|++|
T Consensus 58 y~kcva~~y--~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDt-------n~LAag 121 (783)
T KOG1008|consen 58 YVKCVASFY--GNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDT-------NHLAAG 121 (783)
T ss_pred Cceeehhhc--CCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccH-------HHHHhh
Confidence 345677666 334568899999999999877542211 1111 12335666777766433 356666
Q ss_pred cc----CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-CceeeeecCCC
Q 014114 130 TT----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPP 204 (430)
Q Consensus 130 ~~----~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~ 204 (430)
.. +..+.||++...-.. ......+.. .......+++|..+.+++++|.....+.++|++. ......+..
T Consensus 122 ldkhrnds~~~Iwdi~s~ltv---Pke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-- 195 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTV---PKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-- 195 (783)
T ss_pred hhhhcccCCccceecccccCC---Ccccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--
Confidence 43 456889998765210 001111111 1223445778887888888898888999999973 222222221
Q ss_pred CCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEE-CCCCCcceEEeeecCC----CeEEEEeeCCC-CEEEEEc
Q 014114 205 KNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYD-TSAQRRPVMSFDFRET----PIKAVAEEPDS-FNIYIGN 277 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~----~i~~~~~s~~~-~~l~~~~ 277 (430)
..+..+.. +| .++++++-. ||.|.+|| .+.-+.++..+...+. .+..++|.|.. ..+++..
T Consensus 196 ---------k~vqG~tV--dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 196 ---------KYVQGITV--DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred ---------hhccccee--cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence 22444555 55 677777754 99999999 5554545444433222 48999999854 2445554
Q ss_pred -CCCCEEEEEccCC--------eEEeE------Eecc-ccCcEEEEEEcCCC--CEEEEEeCCCeEEEEeC
Q 014114 278 -GSGDLASVDIRTG--------KLLGC------FIGK-CSGSIRSIARHPTL--PIIASCGLDSYLRFWDI 330 (430)
Q Consensus 278 -~dg~v~iwd~~~~--------~~~~~------~~~~-~~~~v~~i~~s~~~--~~l~s~~~d~~v~iwd~ 330 (430)
..++|++||+..- ..... +... .-..|.+..|++.. ...+.+-..-++.-+++
T Consensus 264 RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 264 RDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 4478999998631 11111 1111 02567778887755 23444444444444443
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.67 E-value=0.036 Score=50.74 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=73.5
Q ss_pred cceeEeEEeeCCCCCEEEEE--eCCC---cEEEEECCCCCcceEEeeecCCCe---EEEEee-CCC-CEEEEEcCCCCE-
Q 014114 214 TWFTSAAFLSIDDHRKFVAG--TNDH---QVRLYDTSAQRRPVMSFDFRETPI---KAVAEE-PDS-FNIYIGNGSGDL- 282 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~--~~dg---~i~~wd~~~~~~~~~~~~~~~~~i---~~~~~s-~~~-~~l~~~~~dg~v- 282 (430)
..+..+.| .+++..|+.. ..+. .+.++|..++...+.........| ..+.|. +++ .+|.....+|.-
T Consensus 184 ~yl~~v~W--~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 184 YYLTRVGW--SPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp EEEEEEEE--EETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred cCccccee--cCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 45777888 5666634333 2222 466778877554232222233333 244554 555 455555577764
Q ss_pred -EEEEccCCeEEeEEeccccCcEEE-EEEcCCCCEE-EEEeCC----CeEEEEeCCCCceeeEEeeccccceeEEEeeec
Q 014114 283 -ASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPII-ASCGLD----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 283 -~iwd~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l-~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s 355 (430)
.+++...+... .+... .-.|.. +.+++++..| +++..+ ..|+.-++..+..+.. +....... ..+.||
T Consensus 262 ly~~~~~~~~~~-~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~--LT~~~~~~-~~~~~S 336 (353)
T PF00930_consen 262 LYLYDLDGGKPR-QLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC--LTCEDGDH-YSASFS 336 (353)
T ss_dssp EEEEETTSSEEE-ESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE--SSTTSSTT-EEEEE-
T ss_pred EEEEccccccee-ccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe--ccCCCCCc-eEEEEC
Confidence 45566555433 44433 566755 6788887654 455543 3566667662333343 32222221 588999
Q ss_pred CCcce
Q 014114 356 DKEVA 360 (430)
Q Consensus 356 ~~g~~ 360 (430)
|+|++
T Consensus 337 pdg~y 341 (353)
T PF00930_consen 337 PDGKY 341 (353)
T ss_dssp TTSSE
T ss_pred CCCCE
Confidence 99998
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.65 E-value=0.0071 Score=43.63 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=66.7
Q ss_pred eEEEEEcC----CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 165 IAFSKVDI----SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 165 i~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
|.++++.. ..+.|++|+.|..|++|+-. +.+.++... ..|.++... ....|+.+..+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~----------~~v~~L~~~---~~~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET----------DKVTSLCSL---GGGRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc----------cceEEEEEc---CCCEEEEEecCCEEE
Confidence 44555543 23688999999999999754 566666543 557777763 347799999999999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeC-C--C-CEEEEEcCCCCEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEP-D--S-FNIYIGNGSGDLA 283 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~--~-~~l~~~~~dg~v~ 283 (430)
+|+-.. + +...+... .+.++.+.. + | ..|++|-.+|.|-
T Consensus 67 vY~~~~--R-lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQ--R-LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcc--e-eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 998743 2 44444433 356655532 2 2 4688888888764
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.055 Score=50.01 Aligned_cols=211 Identities=17% Similarity=0.112 Sum_probs=137.6
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeec
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~ 201 (430)
.++....++.+.+.+..+.... +.+. -+.....++++|+++.++++.. ++++.+.|..+...+....
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~-----~~~~-----vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVL-----GSIP-----VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred EEEecCCCCeEEEEcCccccee-----eEee-----eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 4555555678888884432211 1111 1225678899999988877655 6889999999988887744
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcceE-----EeeecCCCeEEEEeeCCCCEEEE
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM-----SFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~ 275 (430)
... .+ ..+++ +|+++.++... .++.|.++|...... .. .... ...-..+.++|++.++++
T Consensus 158 vG~---------~P-~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 158 VGN---------TP-TGVAV--DPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGV-GTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred cCC---------Cc-ceEEE--CCCCCeEEEEecCCCeEEEEeCCCcce-ecccccccccc-CCCCceEEECCCCCEEEE
Confidence 322 12 56777 89999766655 788999999776331 21 1111 233467889999997776
Q ss_pred EcCC---CCEEEEEccCCeEEeE-EeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEE
Q 014114 276 GNGS---GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 276 ~~~d---g~v~iwd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~ 350 (430)
.... +.+...|..++..... +..... ....+.++|+|.++.... ..+.+.+-|..+......+.........+.
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence 6544 5899999988877665 332212 567789999999888774 458899999988877776432222222245
Q ss_pred EeeecCCcce
Q 014114 351 DSAFADKEVA 360 (430)
Q Consensus 351 ~~~~s~~g~~ 360 (430)
.+++.+....
T Consensus 303 ~~~~~~~~~~ 312 (381)
T COG3391 303 SIAISPLYDT 312 (381)
T ss_pred eccceeeccc
Confidence 5566554433
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.61 E-value=0.02 Score=52.72 Aligned_cols=212 Identities=12% Similarity=0.088 Sum_probs=114.7
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee------eec---------CCCCCCCCc------------------
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW------TAK---------PPPKNSLGI------------------ 210 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~------~~~---------~~~~~~~~~------------------ 210 (430)
.|..+.|.++...|++|...|.|.+|.+...+... ... ........+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788898888889999999999888764322111 000 000000000
Q ss_pred -ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee--e------cCCCeEEEEeeC-----CC---CEE
Q 014114 211 -FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--F------RETPIKAVAEEP-----DS---FNI 273 (430)
Q Consensus 211 -~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~------~~~~i~~~~~s~-----~~---~~l 273 (430)
...+.|++++. + +=-++++|..+|.+.|.|+|.+.- +..-. . ....++++.|+- |+ -.|
T Consensus 83 ~~~~g~vtal~~--S-~iGFvaigy~~G~l~viD~RGPav-I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKN--S-DIGFVAIGYESGSLVVIDLRGPAV-IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEE-EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEec--C-CCcEEEEEecCCcEEEEECCCCeE-EeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 01256778877 3 556899999999999999987542 33211 1 234688888852 22 468
Q ss_pred EEEcCCCCEEEEEccC---CeEE----eEEeccccCcEEEEE-EcCC-C-------------------CEEEEEeCCCeE
Q 014114 274 YIGNGSGDLASVDIRT---GKLL----GCFIGKCSGSIRSIA-RHPT-L-------------------PIIASCGLDSYL 325 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~---~~~~----~~~~~~~~~~v~~i~-~s~~-~-------------------~~l~s~~~d~~v 325 (430)
++|...|.+.+|.+-- +... .....+ .++|..|. |+.+ | +-++....+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~-~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH-DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S-S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccC-CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 8999999999997741 2221 112123 56666654 4221 1 123444456789
Q ss_pred EEEeCCCCceeeEEeeccccceeEEEeeec-----CCcce-eeecCCCcEEEecCCCCCCcccc
Q 014114 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-----DKEVA-NAAADAPMLEIQNGNDTQEDATE 383 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~g~~-~~~~~d~~v~vw~~~~~~~~~~~ 383 (430)
+++...+.+..+... ..+ ..+..+.+- ..+.. ++...+|.+++|.++.+.+....
T Consensus 238 rv~~~~~~k~~~K~~-~~~--~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDP--FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp EEE-TT---EEEEE--SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred EEEeCCCCcccceee-ccc--cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 999999888877743 221 223344442 23444 77889999999999987764433
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.55 E-value=0.059 Score=48.50 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=84.0
Q ss_pred eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC---CC-cEEEEECCCCCcceEEeeecC--
Q 014114 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DH-QVRLYDTSAQRRPVMSFDFRE-- 258 (430)
Q Consensus 185 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg-~i~~wd~~~~~~~~~~~~~~~-- 258 (430)
.|...|+.+|+.-..+... .|+..+.|. +.+..+|+.|-+ +. .-+||-+++...-...+..+.
T Consensus 169 ~i~~idl~tG~~~~v~~~~----------~wlgH~~fs-P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~ 237 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDT----------DWLGHVQFS-PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG 237 (386)
T ss_dssp EEEEEETTT--EEEEEEES----------S-EEEEEEE-TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred eEEEEECCCCceeEEEecC----------ccccCcccC-CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Confidence 4566677776654444432 778899994 234444554432 22 236676654332233333332
Q ss_pred CCeEEEEeeCCCCEEEEE-----cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC----------
Q 014114 259 TPIKAVAEEPDSFNIYIG-----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS---------- 323 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~---------- 323 (430)
..+..=-|.|||..|.-- +.+..|.-+|+.+++....... .....+-.++||++++-=+.|.
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 234445688999776542 2234577778888765432222 2445666788998776544432
Q ss_pred ------eEEEEeCCCCceeeEEee-------ccccceeEEEeeecCCcce--eeecCCCcEEEecCC
Q 014114 324 ------YLRFWDIKTRQLLSAVFL-------KQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 324 ------~v~iwd~~~~~~~~~~~~-------~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~ 375 (430)
.|+++++..+........ .++....=..+.|+|||+. .++...|...||-..
T Consensus 315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 567788877665432211 1111101146799999999 566677888877543
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.00015 Score=58.80 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=67.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEE-EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecccc-Cc
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-GS 303 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~ 303 (430)
-+..+++|+.+|.|++|...........+......|.+ |.-..++.+..+++.||.|+.|++.-.+.+.....| . .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc-cCCC
Confidence 45679999999999999987422211122222223333 223345568899999999999999888877666665 4 45
Q ss_pred EEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 014114 304 IRSIARHPTLPIIASC--GLDSYLRFWDIK 331 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~--~~d~~v~iwd~~ 331 (430)
+.....+..+++++.+ |.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 5555555555555555 566666666654
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0028 Score=57.89 Aligned_cols=142 Identities=17% Similarity=0.225 Sum_probs=96.5
Q ss_pred CCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-------EEEEEeCCCcEEEEEC
Q 014114 173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-------KFVAGTNDHQVRLYDT 244 (430)
Q Consensus 173 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~l~~~~~dg~i~~wd~ 244 (430)
+.++|+ .+.....|+-.|++.|+.+.....+.. |+-+.+ .|+.+ .-+.|-.+..|.-||+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~--t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDI--TPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC----------cceeec--cCCcchhcccccccEEeecCCceEEecc
Confidence 344444 555666799999999999887776542 444455 33322 2245667889999999
Q ss_pred CCCCc-ceEEeeecC----CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE-EeEEeccccCcEEEEEEcCCCCEEEE
Q 014114 245 SAQRR-PVMSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 245 ~~~~~-~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s 318 (430)
+-... .+...+.|. ....|++-..+| +|++|+.+|.|++||- .+.. ...+++. ..+|..|..+.+|++|+.
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILA 488 (644)
T ss_pred cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEE
Confidence 85332 223333332 345666666666 8999999999999997 4444 4446665 889999999999998877
Q ss_pred EeCCCeEEEEeC
Q 014114 319 CGLDSYLRFWDI 330 (430)
Q Consensus 319 ~~~d~~v~iwd~ 330 (430)
.+ +..+.+.++
T Consensus 489 Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 489 TC-KTYLLLIDT 499 (644)
T ss_pred ec-ccEEEEEEE
Confidence 65 456666665
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.50 E-value=0.05 Score=46.43 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=106.4
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG 183 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 183 (430)
+.+.++.+.+... ..+++....+.+..++.. . ..++.+.+...+..-.|++..++.++++--.+
T Consensus 22 ~e~SGLTy~pd~~-------tLfaV~d~~~~i~els~~--G-------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 22 DELSGLTYNPDTG-------TLFAVQDEPGEIYELSLD--G-------KVLRRIPLDGFGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp S-EEEEEEETTTT-------EEEEEETTTTEEEEEETT-----------EEEEEE-SS-SSEEEEEE-STTEEEEEETTT
T ss_pred CCccccEEcCCCC-------eEEEEECCCCEEEEEcCC--C-------CEEEEEeCCCCCCceeEEEECCCEEEEEEcCC
Confidence 3577888876433 144444555555444432 1 34555555545678888998788888877678
Q ss_pred CeEEEEECCCCc------eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC--CCcceEEe-
Q 014114 184 VEVNVWDLDKCE------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSF- 254 (430)
Q Consensus 184 g~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~- 254 (430)
+.+.++++.... ....+..... ......+-.++| ++.++.|+++-...-..+|.+.. ....+...
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~--D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAY--DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S-------SS--EEEEE--ETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred CcEEEEEEeccccccchhhceEEecccc----cCCCcceEEEEE--cCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 999999884321 1111211100 001245889999 78777777777776666666653 11111111
Q ss_pred -------eecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEecc---c-----cCcEEEEEEcCCCCEEEE
Q 014114 255 -------DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGK---C-----SGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 255 -------~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~-----~~~v~~i~~s~~~~~l~s 318 (430)
......+.+++++|.. ++++.+.....|.++| .+|+.+..+.-. + -...-.|+|.++|.+.++
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 1123467889999865 5666677788899999 578876655432 0 135788999999965544
Q ss_pred EeCCCeEEEE
Q 014114 319 CGLDSYLRFW 328 (430)
Q Consensus 319 ~~~d~~v~iw 328 (430)
++-+..++|
T Consensus 239 -sEpNlfy~f 247 (248)
T PF06977_consen 239 -SEPNLFYRF 247 (248)
T ss_dssp -ETTTEEEEE
T ss_pred -cCCceEEEe
Confidence 466666655
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.48 E-value=0.0037 Score=61.61 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCcceEEeeecCCC-eEEEEeeC-----CCCEEEEEcCCCCEEEEEccCCe--EEe-
Q 014114 225 DDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEP-----DSFNIYIGNGSGDLASVDIRTGK--LLG- 294 (430)
Q Consensus 225 ~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~-i~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~~--~~~- 294 (430)
.+.++|+.. .....|+-.|+..++ .+..+..|... |..++-.. .....++|-.++.+..||.|-.. ++.
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 344555443 345789999999977 58888887643 55543211 12345667788899999998632 221
Q ss_pred ---EEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEE
Q 014114 295 ---CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 295 ---~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~v 371 (430)
.+.. .....|++-+.+| +||.|+.+|.||+|| +.|+.-.+. +++- +.+|.++..+.||+++.+..+..|.+
T Consensus 570 ~~k~Y~~--~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~-lp~l-G~pI~~iDvt~DGkwilaTc~tyLlL 643 (794)
T PF08553_consen 570 QSKQYSS--KNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTA-LPGL-GDPIIGIDVTADGKWILATCKTYLLL 643 (794)
T ss_pred ccccccc--CCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhc-CCCC-CCCeeEEEecCCCcEEEEeecceEEE
Confidence 1211 4567788877777 799999999999999 445443332 4443 56689999999999977788888888
Q ss_pred ecCC
Q 014114 372 QNGN 375 (430)
Q Consensus 372 w~~~ 375 (430)
++..
T Consensus 644 i~t~ 647 (794)
T PF08553_consen 644 IDTL 647 (794)
T ss_pred EEEe
Confidence 8864
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.48 E-value=0.13 Score=51.62 Aligned_cols=247 Identities=13% Similarity=0.123 Sum_probs=124.8
Q ss_pred CceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccc--------cccCCceEEEEccCCeeE
Q 014114 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE--------SSSRSRTLLTCTTKGKAS 136 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~i~ 136 (430)
+..|+.++.++.|.-.|..+|+.+..+....+............+.++...... .......++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 346888888999999999999999888663321100000011223334321000 001234778888888887
Q ss_pred EEEeeeecccccCCcceeeEEeeccCCce-------------EEEEEcC--CCCEEEEecC----------CCeEEEEEC
Q 014114 137 MRSIEVTKVSAESSCSTVKSWNVCASGTI-------------AFSKVDI--SEKFSLFGGK----------GVEVNVWDL 191 (430)
Q Consensus 137 v~~~~~~~~~~~~~~~~i~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~v~iwd~ 191 (430)
..|...... +|+....+.| ..+.-.| .+..+++|+. +|.|+-+|.
T Consensus 274 ALDA~TGk~----------~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 274 ALDADTGKL----------CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred EEECCCCCE----------EEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence 777654432 2222221111 0111122 2345555632 688999999
Q ss_pred CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-cEEEEECCCCCcceEEeeecCCCeEEEEeeCCC
Q 014114 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 270 (430)
.+|+.++.+.......... .+.+.....++.+. ...-+|...+. +..-.+...+ .+....
T Consensus 344 ~TGkl~W~~~~g~p~~~~~-------------~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~p----d~~g~~ 404 (764)
T TIGR03074 344 NTGALVWAWDPGNPDPTAP-------------PAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQTP----DQWGGD 404 (764)
T ss_pred CCCcEeeEEecCCCCcccC-------------CCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCccc----cccCCc
Confidence 9999999887432111000 11222222222111 22333443321 1111111100 010000
Q ss_pred CEEEEEcCCCCEEEEEccCCeEEeEEec-ccc-------CcEEEEEEcC-CCC---EEEEEeCCCeEEEEeCCCCceeeE
Q 014114 271 FNIYIGNGSGDLASVDIRTGKLLGCFIG-KCS-------GSIRSIARHP-TLP---IIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 271 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~-------~~v~~i~~s~-~~~---~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
+.....-..+.|.-.|+++|+....+.. ||+ ....=+.+.. +|+ .++.++.+|.++++|-++|+++..
T Consensus 405 r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 405 RTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 0000111235577788888888777765 221 1111122222 553 788999999999999999999887
Q ss_pred Ee
Q 014114 339 VF 340 (430)
Q Consensus 339 ~~ 340 (430)
+.
T Consensus 485 ~~ 486 (764)
T TIGR03074 485 VE 486 (764)
T ss_pred ce
Confidence 53
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00039 Score=39.58 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=32.9
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEE
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd 286 (430)
+...+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566777888999999999999999999999999996
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.013 Score=54.35 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=88.1
Q ss_pred eeEeEEeeCCCCCEEEEEe---CC-CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCC--EEEEEcc
Q 014114 216 FTSAAFLSIDDHRKFVAGT---ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGD--LASVDIR 288 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~---~d-g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~--v~iwd~~ 288 (430)
+..-.| +|++..++... .. ..+.++|+.+++.+. ... ....-...+|+|||+.|+... .||. |.++|+.
T Consensus 195 ~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 195 ILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred eecccc--CcCCCceEEEEEecCCCceEEEEeccCCccce-eec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 344455 66776654432 22 468999999876532 222 223345568999998876654 5554 6777887
Q ss_pred CCeEEeEEeccccCcEEEEEEcCCCCEEEEEe-CCC--eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeec
Q 014114 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~--~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~ 364 (430)
.++... +... .+.-..-.|+|||+.|+-.+ ..| .|.+++...+.. ..+...+. .. ....|+|||.+ +..+
T Consensus 271 ~~~~~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~-~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 271 GKNLPR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN-SNPVWSPDGDKIVFES 344 (425)
T ss_pred CCccee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC-cCccCCCCCCEEEEEe
Confidence 766433 4332 33334668999999887665 444 477777765554 33323322 21 26789999999 4433
Q ss_pred -CCCc--EEEecC
Q 014114 365 -DAPM--LEIQNG 374 (430)
Q Consensus 365 -~d~~--v~vw~~ 374 (430)
.+|. |.+++.
T Consensus 345 ~~~g~~~i~~~~~ 357 (425)
T COG0823 345 SSGGQWDIDKNDL 357 (425)
T ss_pred ccCCceeeEEecc
Confidence 2444 444444
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.34 E-value=0.012 Score=57.05 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=86.7
Q ss_pred ceeEeEEeeCCCCCEEEEEe------CCC--cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-------
Q 014114 215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------- 279 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~------~dg--~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------- 279 (430)
.+...++ +|+++.++... .|. .|.+++.. ........+ ...+.-.|+|+|..|++....
T Consensus 351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 4667777 89999887765 243 45555543 222222233 247889999998888777533
Q ss_pred -----CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE---EeCCCCc-eeeE-EeeccccceeE
Q 014114 280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF---WDIKTRQ-LLSA-VFLKQHLNEVV 349 (430)
Q Consensus 280 -----g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i---wd~~~~~-~~~~-~~~~~~~~~~i 349 (430)
+.+.+.++..++... .. ...|..+.|||||..++... ++.|++ -....|+ .+.. ..+.......+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 223333333332222 11 45799999999999887766 577777 4444454 1100 01222223334
Q ss_pred EEeeecCCcceeeecCCCcEEEecC
Q 014114 350 FDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 350 ~~~~~s~~g~~~~~~~d~~v~vw~~ 374 (430)
.++.|..++.++.+..++.-.+|..
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEE
Confidence 7889999999954444444445553
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.001 Score=65.59 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
.+..++.|+..|.+-..|+...-++...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+ ..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccc
Confidence 35568899999999999987643322222223579999999999999999999999999999998888877765 55544
Q ss_pred EE---EEcCCCCEEEEEeCCCeEEEEe
Q 014114 306 SI---ARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 306 ~i---~~s~~~~~l~s~~~d~~v~iwd 329 (430)
++ .+..++..++++..-|. +|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 44 33345556777776665 554
No 373
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.32 E-value=0.13 Score=47.35 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC-----------------CC-EEEEEe
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-----------------LP-IIASCG 320 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~-----------------~~-~l~s~~ 320 (430)
-.+.+|+.+|++++.++...=|.|.++|+.++..++.+++-.+..+.=+..... .. +++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 357889999999988888777999999999988887777652222222211111 11 345566
Q ss_pred CCCeEEEEeCCCCceeeEEee
Q 014114 321 LDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 321 ~d~~v~iwd~~~~~~~~~~~~ 341 (430)
.-|.|-||.+++|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 789999999999999888543
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.31 E-value=0.086 Score=44.88 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=117.3
Q ss_pred cCCceEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCc
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 238 (430)
.......+.|..++.++-+.+.-| .|+.+|+.+++.......+.. -.-..++.. ++......=.++.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQLTWKEGT 111 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEEEESSSSE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEEEEecCCe
Confidence 344567888866787777777655 699999999988766554321 223445552 3445555567899
Q ss_pred EEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc----ccCcEEEEEEcCCCC
Q 014114 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHPTLP 314 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~i~~s~~~~ 314 (430)
..+||..+.+ .+..+... ..=..++ .+++.|+.+.....++++|..+.+....+.-. .-..++-+.|. +|.
T Consensus 112 ~f~yd~~tl~-~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLK-KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTE-EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccce-EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 9999999855 46666543 3445565 46778888777788999999888776666532 12345556664 565
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeEEeeccc------------cceeEEEeeecCCcce--eee
Q 014114 315 IIASCGLDSYLRFWDIKTRQLLSAVFLKQH------------LNEVVFDSAFADKEVA--NAA 363 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------------~~~~i~~~~~s~~g~~--~~~ 363 (430)
..|-.=....|...|..+|+.+..+.+.+- ...+...++|.|.+.. +||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 555555667788899999999887644321 1357899999887666 454
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.28 E-value=0.14 Score=46.85 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=77.0
Q ss_pred ceEEEEEcCCCCEEEEe--cC---CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCc
Q 014114 164 TIAFSKVDISEKFSLFG--GK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~--~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 238 (430)
.+..+.|.+++..|+.. .. .-.+.+.|..++.....+......... ......|.......+|.....+|.
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~-----~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD-----VYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS-----SSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee-----eecccccccCCCCEEEEEEEcCCC
Confidence 46788888888844433 22 223677788776554443322221111 112334421233445555557775
Q ss_pred EEE--EECCCCCcceEEeeecCCCeEE-EEeeCCCCEEE-EEcCC--CC--EEEEEccCCeEEeEEeccccCcEEEEEEc
Q 014114 239 VRL--YDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGS--GD--LASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 239 i~~--wd~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-~~~~d--g~--v~iwd~~~~~~~~~~~~~~~~~v~~i~~s 310 (430)
-+| ++...+ ....+....-.|.. +.++++++.|+ ++..+ .. |..-++..+..+..+... ...-..+.||
T Consensus 260 ~hly~~~~~~~--~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~S 336 (353)
T PF00930_consen 260 RHLYLYDLDGG--KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFS 336 (353)
T ss_dssp EEEEEEETTSS--EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-
T ss_pred cEEEEEccccc--ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC-CCCceEEEEC
Confidence 444 455543 24556655666755 67788876654 45442 23 444455512334444443 2222699999
Q ss_pred CCCCEEEEEe
Q 014114 311 PTLPIIASCG 320 (430)
Q Consensus 311 ~~~~~l~s~~ 320 (430)
|++++++-..
T Consensus 337 pdg~y~v~~~ 346 (353)
T PF00930_consen 337 PDGKYYVDTY 346 (353)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999876543
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.12 Score=44.31 Aligned_cols=200 Identities=8% Similarity=0.057 Sum_probs=124.3
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
..+.++.|+|+.+.|++......-.++=..+|+.+.++..... .-...+.| ..+++++++--.++.+.++
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--------~DpE~Iey--ig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--------SDPETIEY--IGGNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--------CChhHeEE--ecCCEEEEEehhcceEEEE
Confidence 3489999999999999888887777776678888888765431 22345666 4566677776678888888
Q ss_pred ECCCCCcceE----Ee-----eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE---EeEEecc------ccCcE
Q 014114 243 DTSAQRRPVM----SF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGK------CSGSI 304 (430)
Q Consensus 243 d~~~~~~~~~----~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~------~~~~v 304 (430)
.+......+. .+ ...+...-.++|.|..+.|+.+-+-.-+.||.+..... +.....+ .-..|
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7765322110 11 11255678899999998888887777788887653321 1111111 02357
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccce------eEEEeeecCCcceeeecCCCcEEEec
Q 014114 305 RSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE------VVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 305 ~~i~~s~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~------~i~~~~~s~~g~~~~~~~d~~v~vw~ 373 (430)
.++.|++ .+.+|+-+.+++.+.-.|.. |..+..+.+.....+ ..-.++..++|.+..++..+..+.+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F~ 310 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRFT 310 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceecc
Confidence 7888887 45667777788888888864 565665544332111 12344555555554444444444443
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0015 Score=64.61 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccce
Q 014114 268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
-.+..++.|+..|.|-..|....-....-..+..++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+...++...
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 34568899999999999888543111111222378999999999999999999999999999999999998876666555
Q ss_pred eEEEeeecCCcce-eeecCCCc
Q 014114 348 VVFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 348 ~i~~~~~s~~g~~-~~~~~d~~ 368 (430)
.+.-+.+..++.. +++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 5555666666665 77777775
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.15 Score=45.12 Aligned_cols=206 Identities=14% Similarity=0.075 Sum_probs=112.9
Q ss_pred EEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCC
Q 014114 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK 205 (430)
Q Consensus 126 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 205 (430)
+.+--..+.+.-|+... +..+.|.. ...+.++..-..+..|+++. . -+.+++..++..+..+.....
T Consensus 40 ~w~DI~~~~i~r~~~~~---------g~~~~~~~--p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 40 LWVDILGGRIHRLDPET---------GKKRVFPS--PGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred EEEeCCCCeEEEecCCc---------CceEEEEC--CCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccC
Confidence 33344455566665432 23344442 23344444333444444333 3 266677666555332222111
Q ss_pred CCCCcccCcceeEeEEeeCCCCCEEEEEeC-----------CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEE
Q 014114 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 274 (430)
... ....+.+.. .|+|.+.+.... -|.|+.+|.. +. .+..+..+-..-+.|+||||++.|+
T Consensus 107 ~~~----~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 107 GLP----LNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCC----cCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEEecCceEECCCCCEEE
Confidence 100 133556666 677766554333 1335555542 22 2444444444557899999998888
Q ss_pred EEcCC-CCEEEEEccC--C----eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEEeeccccc
Q 014114 275 IGNGS-GDLASVDIRT--G----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVFLKQHLN 346 (430)
Q Consensus 275 ~~~~d-g~v~iwd~~~--~----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~ 346 (430)
.+... +.|+-|++.. + +....+.....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.++.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--- 254 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--- 254 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---
Confidence 77654 7788887752 1 111122211256667788888888776555554 89999987 99999876653
Q ss_pred eeEEEeeecC
Q 014114 347 EVVFDSAFAD 356 (430)
Q Consensus 347 ~~i~~~~~s~ 356 (430)
..+.+++|--
T Consensus 255 ~~~t~~~FgG 264 (307)
T COG3386 255 KRPTNPAFGG 264 (307)
T ss_pred CCCccceEeC
Confidence 2247777764
No 379
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.17 E-value=0.33 Score=48.83 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC---EEEEEeCCCcEEEEECCCCC
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~ 248 (430)
.+.|.-.|+.+|+..+.++.......+...+....-+.+. ..+++ .++.++.+|.++++|-++++
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 4568888999999999887633322222111222222231 12453 78888999999999988765
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.00079 Score=54.73 Aligned_cols=142 Identities=17% Similarity=0.126 Sum_probs=80.7
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-eEEeEEeccccCcEEE-E
Q 014114 230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRS-I 307 (430)
Q Consensus 230 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~-i 307 (430)
+...+.++.|.-++++..+...+.-..+.....-+ .-+..+++|+.+|.|.+|+.... .....+... ...|-+ |
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcc-cccceecc
Confidence 44456788888888775433233333333221112 23467999999999999988621 111111111 222222 2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee--cCCCcEEEecCCCC
Q 014114 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA--ADAPMLEIQNGNDT 377 (430)
Q Consensus 308 ~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~--~~d~~v~vw~~~~~ 377 (430)
.--.++.+..+++.||.||.|++.-++.+.. ...|..........+..+.+ ..+ +.|..++.|+....
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~--~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGY--VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeee--eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2233556888999999999999988887775 33443122233333333344 444 67777777776553
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.24 Score=45.27 Aligned_cols=212 Identities=11% Similarity=0.090 Sum_probs=83.7
Q ss_pred cceEeec-CCCcEEEEEecCccCCcchhheecCC---CC--cceEEEEeccCCCCCCceEEE--EccC----CeEEEecc
Q 014114 15 LRALTFD-SLGLIKVIEARGEDGGVPKVVERWGD---PH--SSKCVLAASIDDSQNDPLLAV--ARKN----GLTDILNP 82 (430)
Q Consensus 15 ~~l~t~~-~dg~i~vw~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~p~g~~l~~--g~~d----g~i~iwd~ 82 (430)
.+|+..+ ..+.|.|.|+.+ +...+++.+.+.. +. +-..--++.- -|+|+++++ |..+ |-+.++|-
T Consensus 88 r~Li~PgL~SsrIyviD~~~-dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc--lp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKT-DPRKPRLHKVIEPEEVFEKTGLSRPHTVHC--LPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S--TTS-EEEEEE-HHHHHHHH-EEEEEEEEE---SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred CcEEeeeeccCcEEEEECCC-CCCCCceEeeeCHHHHHhhcCCCCCceeee--cCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 4566655 778999999986 3344444444332 11 1111111111 356777777 3333 45888887
Q ss_pred CCCceeeeeeecCCCCCCCCCCceEEEE-eeccCccccccCCceEEEEc--------------------cCCeeEEEEee
Q 014114 83 LNGDLRVAISNAGDSGAQPEDDGIVGLH-LFKRQREESSSRSRTLLTCT--------------------TKGKASMRSIE 141 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~g~i~v~~~~ 141 (430)
++.+.......-.. .....-. |+.... +.+++.. ..+.+.+|++.
T Consensus 165 ~tf~v~g~We~~~~-------~~~~gYDfw~qpr~-------nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 165 ETFEVKGRWEKDRG-------PQPFGYDFWYQPRH-------NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TT--EEEE--SB-T-------T------EEEETTT-------TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred ccccccceeccCCC-------CCCCCCCeEEcCCC-------CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 77666655544111 0111111 222211 1344332 35678888876
Q ss_pred eecccccCCcceeeEEeeccCC-ceEEEEEc--CCCCEEEEec-CCCeEEEEEC-CCC----ceeeeecCCCCCCCCcc-
Q 014114 142 VTKVSAESSCSTVKSWNVCASG-TIAFSKVD--ISEKFSLFGG-KGVEVNVWDL-DKC----EKIWTAKPPPKNSLGIF- 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~-~i~~~~~~--~~~~~l~~~~-~dg~v~iwd~-~~~----~~~~~~~~~~~~~~~~~- 211 (430)
... .++..++...+ ....+.|. |+..+-++++ ...+|..|-- ..+ +.+..+.....+.-.+.
T Consensus 231 ~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 231 TRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp TTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred CCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 433 44455554332 34566664 4444433332 3344444433 333 22333322211111000
Q ss_pred -------cCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcceEE
Q 014114 212 -------TPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 212 -------~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~ 253 (430)
.+.-|+.+.. +.|.++|..++ ..|.|+.||+.....|...
T Consensus 303 ml~~~~~~P~LitDI~i--SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILI--SLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp GGGGG-EE------EEE---TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred cccccccCCCceEeEEE--ccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 1245788888 78888887766 6899999999987765544
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.02 E-value=0.066 Score=52.12 Aligned_cols=147 Identities=12% Similarity=0.004 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCEEEEec------CCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC
Q 014114 164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 235 (430)
.+...+++|+++.++..- .|. .|.+++... .......+ .....-.| +|++..|++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g-----------~~~t~PsW--spDG~~lw~v~d 416 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG-----------HSLTRPSW--SLDADAVWVVVD 416 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC-----------CCCCCceE--CCCCCceEEEec
Confidence 567888999999887654 233 455555422 22111121 12455677 788777766643
Q ss_pred C------------CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEE---EEccCCeE-E---eEE
Q 014114 236 D------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF 296 (430)
Q Consensus 236 d------------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i---wd~~~~~~-~---~~~ 296 (430)
. +.+.+.++..++. .. .....|..+.|||||..|+... ++.|.+ -....|.. + ..+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 2 2333334433221 11 2245799999999999888765 467766 44334431 1 112
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 297 ~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
.......+.++.|..++.++ .+..++...+|.+
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 22213346889999999855 4444444444543
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.91 E-value=0.0036 Score=37.63 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.1
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
...|..++|+|...+||.+..+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 467999999999999999999999999998 56554
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.28 Score=43.53 Aligned_cols=216 Identities=17% Similarity=0.092 Sum_probs=118.4
Q ss_pred CCCCCCc-eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 60 DDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 60 ~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
.+.++.. ++.+--..+.|.-|+..+++....... +.+.+....+... .|+++... +.++
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p----------~~~~~~~~~d~~g--------~Lv~~~~g--~~~~ 90 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP----------GGFSSGALIDAGG--------RLIACEHG--VRLL 90 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC----------CCcccceeecCCC--------eEEEEccc--cEEE
Confidence 3455555 556666778899999876643222211 2334444444332 55554432 3333
Q ss_pred EeeeecccccCCcceeeEEe-ec---cCCceEEEEEcCCCCEEEEecC-----------CCeEEEEECCCCceeeeecCC
Q 014114 139 SIEVTKVSAESSCSTVKSWN-VC---ASGTIAFSKVDISEKFSLFGGK-----------GVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~ 203 (430)
+.+... .+..+. .. .......+...|+|.+.+.... -|.|+.+|. .+..+..+..+
T Consensus 91 ~~~~~~--------~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~ 161 (307)
T COG3386 91 DPDTGG--------KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD 161 (307)
T ss_pred eccCCc--------eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc
Confidence 332111 111111 11 1123445667777776664322 133444443 34444444332
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CCcEEEEECCC--C----CcceEEeeecCCCeEEEEeeCCCCEEEEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSA--Q----RRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~--~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 276 (430)
- ..-+.++| +||++.|+.+.. .+.|.-|++.. + +.....+..+.+..-.++...+|.+.+++
T Consensus 162 ~---------~~~NGla~--SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 162 L---------TIPNGLAF--SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred E---------EecCceEE--CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 1 34578899 999987777654 47888887752 1 11122222334566677777888777555
Q ss_pred cCCC-CEEEEEccCCeEEeEEeccccCcEEEEEEcC-CCCEEE
Q 014114 277 NGSG-DLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIA 317 (430)
Q Consensus 277 ~~dg-~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~ 317 (430)
..+| .|.+|+.. ++++..+... ...+++++|-- +.+.|+
T Consensus 231 ~~~g~~v~~~~pd-G~l~~~i~lP-~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 231 VWGGGRVVRFNPD-GKLLGEIKLP-VKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred ccCCceEEEECCC-CcEEEEEECC-CCCCccceEeCCCcCEEE
Confidence 4544 89999997 9999888876 57788888843 334433
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.82 E-value=0.0043 Score=37.28 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 198 (430)
...|.+++|+|...+||.++.+|.|.+|.+ +++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence 456899999999999999999999999998 655543
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.03 Score=51.49 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=98.3
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCC-------EEEEEcCCCCEEEEEccCCe--EEeE
Q 014114 226 DHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-------NIYIGNGSGDLASVDIRTGK--LLGC 295 (430)
Q Consensus 226 ~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~l~~~~~dg~v~iwd~~~~~--~~~~ 295 (430)
+.++| ..+..-..++-.|+..++ .+..+..+.. |.-+.+.|+.. .-+.|-.+..|.-||.+-.. .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 44444 445555678888998876 4778887765 67777777642 22556788889999998322 1222
Q ss_pred Eecc---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 296 FIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 296 ~~~~---~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
..+| ......|++-..+| +++.||.+|.||+||- .+..-.+. +++- +..|..+..+.||.++.+..+..|.+-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA-lPgL-G~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA-LPGL-GDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc-cccc-CCceeeEEeeccCcEEEEecccEEEEE
Confidence 2222 02334555554455 8999999999999996 55554443 5544 566799999999999888888888887
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
+...
T Consensus 498 ~t~~ 501 (644)
T KOG2395|consen 498 DTLI 501 (644)
T ss_pred EEec
Confidence 7654
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.12 Score=43.88 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=83.3
Q ss_pred EEEEEeCCCc-EEEEECCCCCcceEEeeecC-CCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCC-eEEeEEeccc
Q 014114 229 KFVAGTNDHQ-VRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTG-KLLGCFIGKC 300 (430)
Q Consensus 229 ~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~-~~~~~~~~~~ 300 (430)
-++.+-.-|+ ..++|....+.++....... .-.-.=.|||||++|+..-.| |.|-|||.+.+ +.+.++..|
T Consensus 82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~- 160 (366)
T COG3490 82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH- 160 (366)
T ss_pred eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC-
Confidence 3444444443 45788877665433221110 011122689999999886544 67999999854 467788887
Q ss_pred cCcEEEEEEcCCCCEEEEEeC------C------------CeEEEEeCCCCceeeEEeecc--ccceeEEEeeecCCcce
Q 014114 301 SGSIRSIARHPTLPIIASCGL------D------------SYLRFWDIKTRQLLSAVFLKQ--HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~------d------------~~v~iwd~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~ 360 (430)
.-....+.|.+||+.|+.+.. | -++.+.|..+|+++....++. +..+ +..++..+||.+
T Consensus 161 GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS-iRHld~g~dgtv 239 (366)
T COG3490 161 GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS-IRHLDIGRDGTV 239 (366)
T ss_pred CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc-eeeeeeCCCCcE
Confidence 777889999999999887743 1 134455656677766655552 2222 577888888877
Q ss_pred ee
Q 014114 361 NA 362 (430)
Q Consensus 361 ~~ 362 (430)
..
T Consensus 240 wf 241 (366)
T COG3490 240 WF 241 (366)
T ss_pred EE
Confidence 44
No 388
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.025 Score=56.79 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=95.9
Q ss_pred eeccCCceEEEEEcCCCCEEEEe--cCCCeEEEEECCCCceeee--ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 158 NVCASGTIAFSKVDISEKFSLFG--GKGVEVNVWDLDKCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
++...-.|..+...++....++. +.+-.|+.||+.+-..-.. ..................++.|.+.+ ....+++
T Consensus 96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~ 174 (1405)
T KOG3630|consen 96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVD 174 (1405)
T ss_pred eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhh
Confidence 33334456666667776655544 3344799999976332110 11111111222233556778884322 2345667
Q ss_pred eCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec---cccCcEEEEEEc
Q 014114 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARH 310 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~i~~s 310 (430)
..|+.|++..+......+..+.. ....++++|+|.|..+++|-..|++.-|-. +++....+.. .....|.+|.|-
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 78999998877653332333332 457899999999999999999999999876 3444333332 124679999998
Q ss_pred CCCCEEEE
Q 014114 311 PTLPIIAS 318 (430)
Q Consensus 311 ~~~~~l~s 318 (430)
....+++.
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77666554
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.64 E-value=0.61 Score=43.80 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=107.2
Q ss_pred EEEEEcCCCCEEEEe-----cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC---
Q 014114 166 AFSKVDISEKFSLFG-----GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--- 237 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--- 237 (430)
..+.++|++++++.+ +....|+++|+.+++.+...-.. .....+.| .++++.|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W--~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSW--SDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEE--CTTSSEEEEEECSTTTS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEE--eCCCCEEEEEEeCcccc
Confidence 356789999988854 22345999999999776532111 11223888 78877776655333
Q ss_pred --------cEEEEECCCCCcc-eEEeeecCCC--eEEEEeeCCCCEEEEEcCC----CCEEEEEccCC----eEEeEEec
Q 014114 238 --------QVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG----KLLGCFIG 298 (430)
Q Consensus 238 --------~i~~wd~~~~~~~-~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d----g~v~iwd~~~~----~~~~~~~~ 298 (430)
.|+.|.+.+.... ...+...... ...+..++++++|+..+.. ..+.+.|+..+ .....+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 3788888775432 3445443333 5688889999998765433 34778888764 22333333
Q ss_pred cccCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce--eeEEeeccccc-eeEEEeeecCCcceeeecCCC--cEE
Q 014114 299 KCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQL--LSAVFLKQHLN-EVVFDSAFADKEVANAAADAP--MLE 370 (430)
Q Consensus 299 ~~~~~v~~i~~s~~~~~l~s~~---~d~~v~iwd~~~~~~--~~~~~~~~~~~-~~i~~~~~s~~g~~~~~~~d~--~v~ 370 (430)
...+....+... .+.+++... ..+.|.-.++.+... ...+ +..+.. ..+..+....+..++....++ .|.
T Consensus 275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~-l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV-LIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE-EE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeE-EcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 313333334333 444444443 335677777776653 1212 222322 345555554444334444443 567
Q ss_pred EecCC
Q 014114 371 IQNGN 375 (430)
Q Consensus 371 vw~~~ 375 (430)
+++..
T Consensus 353 v~~~~ 357 (414)
T PF02897_consen 353 VYDLD 357 (414)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 78777
No 390
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.64 E-value=0.42 Score=41.94 Aligned_cols=254 Identities=13% Similarity=0.044 Sum_probs=127.7
Q ss_pred CCCCCCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee
Q 014114 9 CPGCPPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 9 ~~~~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
|+.--..+|+.|.++| +.+++.... . ....... ...+.-+.+.. +-+.|++ -.|+.+.++++..-...
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~-~---~~~~i~~--~~~I~ql~vl~----~~~~llv-Lsd~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDP-S---KPTRILK--LSSITQLSVLP----ELNLLLV-LSDGQLYVYDLDSLEPV 69 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCC-c---cceeEee--cceEEEEEEec----ccCEEEE-EcCCccEEEEchhhccc
Confidence 5555567899999999 899988321 0 1111111 11133333332 2233333 34599999998764443
Q ss_pred eeeee-cCCCC-----CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCc-ceeeEEeecc
Q 014114 89 VAISN-AGDSG-----AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCA 161 (430)
Q Consensus 89 ~~~~~-~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-~~i~~~~~~~ 161 (430)
..... ..+.. ..+....+...+.. ... .....+.......+.+|....... .. ..++- +..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~-~~~-----~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke--~~l 137 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVN-GGH-----EGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKE--ISL 137 (275)
T ss_pred cccccccccccccccccccccCCeeEEeec-ccc-----ccceEEEEEECCEEEEEEEECCcc----cccceeEE--EEc
Confidence 31110 00000 00111222222200 111 222444444555888888765311 00 12232 334
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC---CCcccCcceeEeEEeeCCCCCEEEEEeCCCc
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 238 (430)
...+.+++|. ++.++.|..+ ...+.|+.++.....+....... .......++..+.. +++.+|++ . +..
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~Ll~-~-~~~ 209 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDNEFLLC-Y-DNI 209 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCceEEEE-e-cce
Confidence 5788899998 5677777655 48889998766544332211110 00001123333343 34555554 2 333
Q ss_pred EEEEECCCCCcce-EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc
Q 014114 239 VRLYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 239 i~~wd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
-.+.|... +... ..+... ....++++.. .+|++-.. +.|.||++.++++++.+...
T Consensus 210 g~fv~~~G-~~~r~~~i~W~-~~p~~~~~~~--pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 210 GVFVNKNG-EPSRKSTIQWS-SAPQSVAYSS--PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEcCCC-CcCcccEEEcC-CchhEEEEEC--CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 34445443 3222 344443 3556666643 37776655 45999999999999988764
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.63 E-value=0.47 Score=46.34 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=78.2
Q ss_pred CCCEEEEecCCCe-----EEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC------cEEE
Q 014114 173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~i~~ 241 (430)
++...++|+.||. |..||..+.+=-........ ......+.+ ++.+.++|+.++ ++..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-------r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-------RSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-------eeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence 6778888988864 66677665432111111100 022333344 788888888654 4677
Q ss_pred EECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC-----EEEEEccCCeEEeE--EeccccCcEEEEEEcCCC
Q 014114 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~--~~~~~~~~v~~i~~s~~~ 313 (430)
||..+..= .+..+........ ++. -++.+.+.|+.|+. |..||..+.+-... +... ...+..+.+ ++
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~~--~~ 523 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVVL--GG 523 (571)
T ss_pred EcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEEE--CC
Confidence 88776431 0111111111111 222 25677888887763 77888877553322 2222 223333333 66
Q ss_pred CEEEEEeCCC-----eEEEEeCCCCce
Q 014114 314 PIIASCGLDS-----YLRFWDIKTRQL 335 (430)
Q Consensus 314 ~~l~s~~~d~-----~v~iwd~~~~~~ 335 (430)
...+.|+.|| +|..||..+.+-
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCce
Confidence 7788888776 466676655443
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.62 E-value=0.11 Score=50.37 Aligned_cols=116 Identities=12% Similarity=0.050 Sum_probs=80.3
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEc--CCCCEEEEEeCCCeEEEEeC-------
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH--PTLPIIASCGLDSYLRFWDI------- 330 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~s~~~d~~v~iwd~------- 330 (430)
...-+.-+.-++.-++-+....+.|||.+.+...++-.-...+.|.++.|. |+++.+++.|..+.|.+|.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 334444444444444444556799999998876544332226789999986 68899999999999999954
Q ss_pred --CCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 331 --KTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 331 --~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
.+..++..+.+..+....|.+..|-++|.+++++. +.+.|++..-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~~ 157 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKWL 157 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECCCc
Confidence 12345666666667666789999999999855443 4678877654
No 393
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.40 E-value=0.71 Score=41.81 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=104.5
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
..|+.+..+|.-.+|.++... +.+.-..-..+.......++|+.+.++-......|+..|+.+.+....+..+
T Consensus 49 kllF~s~~dg~~nly~lDL~t-------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLAT-------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred EEEEEeccCCCcceEEEEccc-------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 456666667777777665432 2222222111122224556777777765555568999999987754444433
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeC----------------------CCcEEEEECCCCCcceEEeeecCCCe
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----------------------DHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------------------dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
. .++....|..+.++..++-.-. ...|...|+.+++ ...+-.....+
T Consensus 122 ~---------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wl 190 (386)
T PF14583_consen 122 D---------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWL 190 (386)
T ss_dssp T---------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-E
T ss_pred c---------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccc
Confidence 2 5565566654566666543321 1235556777755 33333345688
Q ss_pred EEEEeeCCCCEEEEEcCCC-----CEEEEEccC-CeEEeEEeccc-cCcEEEEEEcCCCCEEEEEe-----CCCeEEEEe
Q 014114 262 KAVAEEPDSFNIYIGNGSG-----DLASVDIRT-GKLLGCFIGKC-SGSIRSIARHPTLPIIASCG-----LDSYLRFWD 329 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg-----~v~iwd~~~-~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~-----~d~~v~iwd 329 (430)
..+.|+|....+++=|..| .-|||-+++ +.....+..+. ...+..=-|.|||..|.--+ .+..|.-+|
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d 270 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD 270 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence 8999999665444433322 136676553 22222222221 23445557899998765433 345677788
Q ss_pred CCCCceeeEEeeccccceeEEEeeecCCcceeeec
Q 014114 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAA 364 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~ 364 (430)
+.+++....... . ......-++||.+++|.
T Consensus 271 ~~t~~~~~~~~~----p-~~~H~~ss~Dg~L~vGD 300 (386)
T PF14583_consen 271 PDTGERRRLMEM----P-WCSHFMSSPDGKLFVGD 300 (386)
T ss_dssp TTT--EEEEEEE------SEEEEEE-TTSSEEEEE
T ss_pred CCCCCceEEEeC----C-ceeeeEEcCCCCEEEec
Confidence 888765433211 1 13566678899885543
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.40 E-value=0.21 Score=48.67 Aligned_cols=157 Identities=14% Similarity=0.184 Sum_probs=83.0
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC----------
Q 014114 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------- 237 (430)
Q Consensus 173 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---------- 237 (430)
++...+.||.++ .+..||..+.+ +.....-.... .....+.+ ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r-----~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIAL-----SSYGMCVL----DQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCccc-----ccccEEEE----CCEEEEEeCCCccccccccccc
Confidence 567777787653 47888887653 22211100000 11222333 677777777653
Q ss_pred -------------cEEEEECCCCC-cceEEeeecCCCeEEEEeeCCCCEEEEEcCC------CCEEEEEccC-C--eEEe
Q 014114 238 -------------QVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-G--KLLG 294 (430)
Q Consensus 238 -------------~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~v~iwd~~~-~--~~~~ 294 (430)
.+..||..+.+ ..+..+....... +++ .-+++..+.|+.+ ..+..||..+ . ..+.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 46778877532 1111111111111 122 2256677777654 2367899886 3 3444
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeeEEeeccccce
Q 014114 295 CFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
.+... ......+.+ ++++.++|+.|+ .+-.||..+.+-... .+.|.+.
T Consensus 498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~--~~~~~~~ 547 (557)
T PHA02713 498 TTESR-LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI--CHQHSNS 547 (557)
T ss_pred ccCcc-cccceeEEE--CCEEEEEeeecceeehhhcCcccccccch--hhhcCCc
Confidence 44433 333333444 778889999888 788888877665443 3445443
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.32 E-value=0.31 Score=40.27 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=61.4
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC-----CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-----GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
..++-+.+..+..|+.....-. ..+.-.++++... ...-.++...+|++.++.-..++|...|+.+|+.+.+
T Consensus 172 fY~iDsln~~V~a~dyd~~tG~---~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPTGD---LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EEEEccCceEEeeeecCCCccc---ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 4556677777877875433211 1122233444321 1123455566888888888899999999999999999
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
+..+. ..+++++|- -++-..+++.
T Consensus 249 iklPt---------~qitsccFg-Gkn~d~~yvT 272 (310)
T KOG4499|consen 249 IKLPT---------PQITSCCFG-GKNLDILYVT 272 (310)
T ss_pred EEcCC---------CceEEEEec-CCCccEEEEE
Confidence 88765 669999994 3333444443
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.31 E-value=0.25 Score=48.17 Aligned_cols=184 Identities=11% Similarity=0.149 Sum_probs=89.0
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-----cEEE
Q 014114 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~ 241 (430)
++..++.||.+ ..+..||+.+..-. .+..-. .. ......+.+ ++...+.|+.++ .+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~-~~-----R~~~~~~~~----~g~IYviGG~~~~~~~~sve~ 371 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMI-KN-----RCRFSLAVI----DDTIYAIGGQNGTNVERTIEC 371 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCc-ch-----hhceeEEEE----CCEEEEECCcCCCCCCceEEE
Confidence 56666677753 34778887765321 111100 00 011223333 677888888764 4788
Q ss_pred EECCCCC-cceEEeeecCCCeEEEEeeCCCCEEEEEcCCC-----------------------CEEEEEccCCeE--EeE
Q 014114 242 YDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-----------------------DLASVDIRTGKL--LGC 295 (430)
Q Consensus 242 wd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----------------------~v~iwd~~~~~~--~~~ 295 (430)
||..+.. ..+..+.........++ -++...+.|+.++ .+..||..+.+- +..
T Consensus 372 Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~ 449 (557)
T PHA02713 372 YTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN 449 (557)
T ss_pred EECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC
Confidence 9987632 11111111111111222 2577777777542 477788876543 222
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCC-CceeeEEeeccccceeEEEeeecCCcce-eeecCCC
Q 014114 296 FIGKCSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAP 367 (430)
Q Consensus 296 ~~~~~~~~v~~i~~s~~~~~l~s~~~d------~~v~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~ 367 (430)
+... ......+. -++++.+.|+.+ ..+..||..+ .+-.....++..... ..++. -+|.+ ++|+.++
T Consensus 450 m~~~-r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~-~~~~iyv~Gg~~~ 523 (557)
T PHA02713 450 FWTG-TIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTIL-HDNTIMMLHCYES 523 (557)
T ss_pred CCcc-cccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEE-ECCEEEEEeeecc
Confidence 2211 11111222 256677777754 2467899886 343222112222111 11122 26677 8888888
Q ss_pred --cEEEecCC
Q 014114 368 --MLEIQNGN 375 (430)
Q Consensus 368 --~v~vw~~~ 375 (430)
.+..||..
T Consensus 524 ~~~~e~yd~~ 533 (557)
T PHA02713 524 YMLQDTFNVY 533 (557)
T ss_pred eeehhhcCcc
Confidence 44445443
No 397
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.07 E-value=1.3 Score=41.60 Aligned_cols=244 Identities=12% Similarity=0.068 Sum_probs=124.5
Q ss_pred EeccCCCCCCceEEEE-ccCC----eEEEeccCCCceeeee-eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE
Q 014114 56 AASIDDSQNDPLLAVA-RKNG----LTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g-~~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
.+++ +|+|++||.+ +..| .|++.|+.+|+.+... ... ....+.|.+... ..+.+.
T Consensus 128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----------~~~~~~W~~d~~-------~~~y~~ 188 (414)
T PF02897_consen 128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----------KFSSVSWSDDGK-------GFFYTR 188 (414)
T ss_dssp EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----------ESEEEEECTTSS-------EEEEEE
T ss_pred eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----------ccceEEEeCCCC-------EEEEEE
Confidence 5666 8999998864 3333 4999999999776532 221 112255655333 133333
Q ss_pred ccC----------CeeEEEEeeeecccccCCcceeeEEeeccCCc-eEEEEEcCCCCEEEEec---CC-CeEEEEECCCC
Q 014114 130 TTK----------GKASMRSIEVTKVSAESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGG---KG-VEVNVWDLDKC 194 (430)
Q Consensus 130 ~~~----------g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-i~~~~~~~~~~~l~~~~---~d-g~v~iwd~~~~ 194 (430)
... ..+..|.+..... .-..+|....... ...+..++++++|+... .+ ..+++.++..+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQS------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GG------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred eCcccccccCCCCcEEEEEECCCChH------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 222 2244444432221 2234555444444 66788899999887532 23 46888888774
Q ss_pred ----ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe---CCCcEEEEECCCCCc--ceEEeeecCC--CeEE
Q 014114 195 ----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFRET--PIKA 263 (430)
Q Consensus 195 ----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~--~~~~~~~~~~--~i~~ 263 (430)
.....+..... .....+.. ..+.+++... .++.|...++..... ....+..+.. .+..
T Consensus 263 ~~~~~~~~~l~~~~~--------~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 263 GSPDAKPKLLSPRED--------GVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp TTSS-SEEEEEESSS--------S-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred CCCcCCcEEEeCCCC--------ceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 12222221110 11223333 2333443332 245677778876542 1224444544 3555
Q ss_pred EEeeCCCCEEEEE-cCCC--CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE-EE-Ee--CCCeEEEEeCCCCcee
Q 014114 264 VAEEPDSFNIYIG-NGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-AS-CG--LDSYLRFWDIKTRQLL 336 (430)
Q Consensus 264 ~~~s~~~~~l~~~-~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s-~~--~d~~v~iwd~~~~~~~ 336 (430)
+.. .+.+|+.. ..++ .|+++++..+.....+.....+.|..+...+++..+ ++ .+ .-.+++.||+.+++..
T Consensus 332 ~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 332 VSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 544 34455544 3443 488999974555555554325567777766666543 22 22 2357888899888764
Q ss_pred e
Q 014114 337 S 337 (430)
Q Consensus 337 ~ 337 (430)
.
T Consensus 410 ~ 410 (414)
T PF02897_consen 410 L 410 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.00 E-value=0.91 Score=39.26 Aligned_cols=145 Identities=11% Similarity=0.067 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCCEEEEec---CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
.+.+.+++++++.++... ....|+++........ .+.. ..+..-.| ++++...+....+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g-----------~~l~~PS~--d~~g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG-----------GSLTRPSW--DPDGWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC-----------Cccccccc--cCCCCEEEEEcCCCceE
Confidence 678889999998777655 3344555554332221 1122 23566677 77877766666666666
Q ss_pred EEE-CCCCCcceEEeeec--CCCeEEEEeeCCCCEEEEEc---CCCCEEEEEcc---CC--e----EEeEEeccccCcEE
Q 014114 241 LYD-TSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG--K----LLGCFIGKCSGSIR 305 (430)
Q Consensus 241 ~wd-~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~---~dg~v~iwd~~---~~--~----~~~~~~~~~~~~v~ 305 (430)
++. ...+.......... ...|..+.+||||..++.-. .++.|.+--+. .+ . .+...... ...+.
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~ 169 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVT 169 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcce
Confidence 663 33322212222222 12899999999998887665 34667665443 22 1 11112122 46899
Q ss_pred EEEEcCCCCEEEEEeCCC
Q 014114 306 SIARHPTLPIIASCGLDS 323 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~ 323 (430)
.+.|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999998877665433
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.93 E-value=1.1 Score=39.61 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=80.5
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEc-cCCeE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGKL 292 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~-~~~~~ 292 (430)
..+..+.. .+++.+++++..-..+.-||.-... -...-......|.++.|.|++.+.+++ ..|.|+.=+. ...+.
T Consensus 145 gs~~~~~r--~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 145 GSINDITR--SSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp --EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred ceeEeEEE--CCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 44677766 7899988887665556677764311 111122235789999999998776655 7888887762 22222
Q ss_pred EeE----EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCc
Q 014114 293 LGC----FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPM 368 (430)
Q Consensus 293 ~~~----~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~ 368 (430)
... +... .-.+..++|.+++...++|+ .|.+ +.....|+.-...........-++.+.|.++.+-++.+.+|.
T Consensus 221 w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp E---B-TTSS---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred cccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 111 1111 34589999999987777665 4533 344555665544211122233468889987766677888888
Q ss_pred EEEe
Q 014114 369 LEIQ 372 (430)
Q Consensus 369 v~vw 372 (430)
|.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7655
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=1.1 Score=38.66 Aligned_cols=174 Identities=7% Similarity=0.020 Sum_probs=100.7
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.| +|+.+.|.+-.....-.||=..+|+.+..+.... ....-++.+..... +.++--.+.
T Consensus 88 vS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~--------fvi~dER~~ 150 (316)
T COG3204 88 VSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQ--------FVIVDERDR 150 (316)
T ss_pred ccceee--CCCcceEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEecCCE--------EEEEehhcc
Confidence 445556 7777778777777776677666899998886511 01122345544222 555556677
Q ss_pred eeEEEEeeeecccccCCcceeeEEeecc-CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCC--CCCCc
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--NSLGI 210 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~ 210 (430)
.+.+..+.............+.+-...+ ......++|+|....|+.+-+-+-+.||.+.............. ....+
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 7888777654322211222233322223 34577899999998888888877888877653321111111100 00000
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
...-+.++.|. .+.+.+++-+.+++.+.-.|...
T Consensus 231 -f~~DvSgl~~~-~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 231 -FVLDVSGLEFN-AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred -Eeeccccceec-CCCCcEEEEecCCceEEEEecCC
Confidence 01346778884 34567777778888888888764
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.71 E-value=1.7 Score=40.26 Aligned_cols=155 Identities=9% Similarity=-0.036 Sum_probs=77.3
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEecc---CCCCCCceEEEEccCCeEEEeccCC--Cc---
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASI---DDSQNDPLLAVARKNGLTDILNPLN--GD--- 86 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~g~~l~~g~~dg~i~iwd~~~--~~--- 86 (430)
-.+++|+..|.++||+....+.....++.... -..+ ++.+.. ...++...||+ -.-..+.||.+.. |.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~P--ILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDP--ILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCc--EEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 47899999999999999764222222222221 1233 443332 12223334444 4556778887732 11
Q ss_pred ----eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC
Q 014114 87 ----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (430)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (430)
.+..+..|.-. ...-.. +.--+.... ....+..-+.||.+.+++-+.. .....+..-
T Consensus 114 g~~~~L~~~yeh~l~---~~a~nm-~~G~Fgg~~-----~~~~IcVQS~DG~L~~feqe~~----------~f~~~lp~~ 174 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQ---RTAYNM-CCGPFGGVK-----GRDFICVQSMDGSLSFFEQESF----------AFSRFLPDF 174 (418)
T ss_pred CcEEEEEEEEEEecc---cceeEE-EEEECCCCC-----CceEEEEEecCceEEEEeCCcE----------EEEEEcCCC
Confidence 11111112100 000011 111111111 2347888888999999874421 111111111
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECC
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLD 192 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~ 192 (430)
--.-.+.+.+....|++++.+..|..|...
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 112346777788888989888888888753
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.69 E-value=0.0032 Score=61.20 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=93.7
Q ss_pred CceEEEEEcC-CCCEEEEecCCCeEEEEECC--CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcE
Q 014114 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 239 (430)
+.+..+.|-. +...++ -.-|.+.+|++. .|+..-.+.-+....++.. +..|.-+-| -++..++..+-.++.|
T Consensus 133 G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~-~~~V~wcp~--~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSD-PQLVSWCPI--AVNKVYICYGLKGGEI 207 (1283)
T ss_pred CCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCC-cceeeeccc--ccccceeeeccCCCce
Confidence 4555566532 222222 233567888875 3443322222222222211 122333334 3455677777888999
Q ss_pred EEEECCCCCcceEEeeecCCCeEEE-----------EeeCCCCEEEEEcCCCCEEEEEcc-----CCeEEeEEeccccCc
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAV-----------AEEPDSFNIYIGNGSGDLASVDIR-----TGKLLGCFIGKCSGS 303 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~-----------~~s~~~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~~~~ 303 (430)
++....... ...+..|...+..+ .++|||..|+.++.||.++.|.+. .-++++..+.|...+
T Consensus 208 ~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p 285 (1283)
T KOG1916|consen 208 RLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP 285 (1283)
T ss_pred eEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence 988876533 23344465554443 358999999999999999888764 234566666663244
Q ss_pred EEEEEEcCCC---------CEEEEEe-CCCeEEEEeCCCCcee
Q 014114 304 IRSIARHPTL---------PIIASCG-LDSYLRFWDIKTRQLL 336 (430)
Q Consensus 304 v~~i~~s~~~---------~~l~s~~-~d~~v~iwd~~~~~~~ 336 (430)
-.|.-++... .++++++ .+.-+++|.....+++
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3333344321 2445554 4456999988877776
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.65 E-value=0.94 Score=44.10 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=74.1
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
.-+.-+.-++..++-+....+.|||...+...+...-. ..+.|.++.|...|+++.+++.+....|.+|--.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--------~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--------EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--------CCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33444444455555555567999999888754433211 1266999999989999999999999999998642
Q ss_pred C--------CCcceEEe--eecC-CCeEEEEeeCCCCEEEEEcCCCCEEEEEcc
Q 014114 246 A--------QRRPVMSF--DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 246 ~--------~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~ 288 (430)
. ...++..+ ..++ .+|.+..|.++|.+++.+ .+.+.|+|-.
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 1 01123333 2233 589999999999655543 3568888753
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.59 E-value=2.6 Score=41.34 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=91.5
Q ss_pred CceEEEEccC------CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 65 DPLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 65 g~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
+.+.++|+.| ..+..||..+++-...- +.. ....-.++... .+...+.|+.+|.-..-
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a----~M~---~~R~~~~v~~l---------~g~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA----PMN---TKRSDFGVAVL---------DGKLYAVGGFDGEKSLN 396 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccC----Ccc---CccccceeEEE---------CCEEEEEeccccccccc
Confidence 3567788888 34778888766622211 110 00111112221 23467777877665554
Q ss_pred EeeeecccccCCcceeeEEeeccCC--ceEEEEEc-CCCCEEEEecCCC------eEEEEECCCCceeeeecCCCCCCCC
Q 014114 139 SIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVD-ISEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLG 209 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~--~i~~~~~~-~~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~ 209 (430)
+++.-.. .-..|.....- .....+.. -++...++|+.++ .+..||..+..=...-......
T Consensus 397 svE~YDp-------~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--- 466 (571)
T KOG4441|consen 397 SVECYDP-------VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--- 466 (571)
T ss_pred cEEEecC-------CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc---
Confidence 4433221 11223322111 11122211 2677777787554 4677887765432221111110
Q ss_pred cccCcceeEeEEeeCCCCCEEEEEeCCCc-----EEEEECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC--
Q 014114 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-----VRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-- 281 (430)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-- 281 (430)
.......+ ++.+.+.|+.|+. |..||..+.+= .+..+......+..+.+ ++...++|+.||.
T Consensus 467 ----~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 467 ----SGFGVAVL----NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNN 536 (571)
T ss_pred ----ccceEEEE----CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccc
Confidence 12223333 7788888887763 67788876431 11112222222222322 5667788887754
Q ss_pred ---EEEEEccCC
Q 014114 282 ---LASVDIRTG 290 (430)
Q Consensus 282 ---v~iwd~~~~ 290 (430)
|..||..+.
T Consensus 537 l~~ve~ydp~~d 548 (571)
T KOG4441|consen 537 LNTVECYDPETD 548 (571)
T ss_pred cceeEEcCCCCC
Confidence 666766554
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.50 E-value=1.5 Score=38.11 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=117.7
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECC------CC-ceeeeecCCCCCCCCcccCcceeEeEEee------CCC----
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLD------KC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDD---- 226 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~------~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~---- 226 (430)
.-+.|+++|.+.+-++....+...+||.. .. ..+..+....... .+...+.+.|.. +..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~----~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLA----AEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCC----CCCCccEEEEeCCCceEEcCCCccc
Confidence 34678999999888888888899999986 12 2233333211100 013355555531 111
Q ss_pred CCEEEEEeCCCcEEEEECCCCCc----ceEEeeec-CCCe-EEEEeeC--CCCEEEEE-cCCCCEEEEEccCCeEE--eE
Q 014114 227 HRKFVAGTNDHQVRLYDTSAQRR----PVMSFDFR-ETPI-KAVAEEP--DSFNIYIG-NGSGDLASVDIRTGKLL--GC 295 (430)
Q Consensus 227 ~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~-~~~i-~~~~~s~--~~~~l~~~-~~dg~v~iwd~~~~~~~--~~ 295 (430)
...++.+++||+|.-|...-... ....+... ...| ..+++.. .+.+|+.+ ...++|.+||-.-.+.. ..
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 12467889999999998643221 12223211 1233 3455543 34566555 46789999986432211 01
Q ss_pred Eecc---------------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC----
Q 014114 296 FIGK---------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD---- 356 (430)
Q Consensus 296 ~~~~---------------~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~---- 356 (430)
+... ..-.|+-..-.++.+.=+.+..-|.|-+||+ .|..++++...+..+.. +.|+..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaP-WG~a~APa~FG 257 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAP-WGLAIAPESFG 257 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCC-ceeeeChhhhC
Confidence 1100 0111222222333333344445579999996 58999987666676665 8888876
Q ss_pred --Ccce-eeecCCCcEEEecCCC
Q 014114 357 --KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 357 --~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.|.+ +---.||+|..||...
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCC
Confidence 4555 4444699999999874
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.47 E-value=1.4 Score=41.87 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=71.1
Q ss_pred cceeEeEEeeC--CCCCEEEEEeCCCcEEEEECCCC--C--cceEEeeec---CCC--eEEEEeeCCCCEEEEEcCCCCE
Q 014114 214 TWFTSAAFLSI--DDHRKFVAGTNDHQVRLYDTSAQ--R--RPVMSFDFR---ETP--IKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 214 ~~v~~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~--~--~~~~~~~~~---~~~--i~~~~~s~~~~~l~~~~~dg~v 282 (430)
..|..+.|.|. .+...++.......|.+|-+... + +.+..-..+ .-+ -....|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34888888421 11224555577889999987621 1 111111111 111 2346799998888776665554
Q ss_pred EEEEccCC--eEEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q 014114 283 ASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIK 331 (430)
Q Consensus 283 ~iwd~~~~--~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~ 331 (430)
.+++++.. +....+++ .+-|.|.+|.+||+.|+.+- ..=.-+|||-.
T Consensus 137 V~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccC--CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 56666533 34445554 68999999999998876654 34467899854
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.40 E-value=1 Score=41.46 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=76.6
Q ss_pred ceeEeEEeeCCCCCEEEEEe-----------CCC-cEEEEECCCC--Cc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 215 WFTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQ--RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~-----------~dg-~i~~wd~~~~--~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
....++| .++++++++-. ..+ .|.+++-..+ +. ....+...-.....+++.+++ |++++..
T Consensus 15 ~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 3567788 78888777643 223 6777765432 21 123333333456889999988 4444444
Q ss_pred CCEEEEEccC-------CeEE-eEEecc---ccCcEEEEEEcCCCCEEEEEeCC-------------------CeEEEEe
Q 014114 280 GDLASVDIRT-------GKLL-GCFIGK---CSGSIRSIARHPTLPIIASCGLD-------------------SYLRFWD 329 (430)
Q Consensus 280 g~v~iwd~~~-------~~~~-~~~~~~---~~~~v~~i~~s~~~~~l~s~~~d-------------------~~v~iwd 329 (430)
...++.|... .+.+ ..+... +......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333435421 1122 223221 12457889999999876655521 3455555
Q ss_pred CCCCceeeEEeeccccceeEEEeeecCCcceeee
Q 014114 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~ 363 (430)
...++. .. ...+. .. .+.++|+++|.++++
T Consensus 171 pdg~~~-e~-~a~G~-rn-p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL-RV-VAHGF-QN-PYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE-EE-EecCc-CC-CccceECCCCCEEEE
Confidence 544332 22 12332 22 378899999998433
No 408
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.38 E-value=2.2 Score=43.39 Aligned_cols=183 Identities=15% Similarity=0.062 Sum_probs=100.9
Q ss_pred EEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-----------CCcEEEEECCCCCcceEEe
Q 014114 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 186 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~ 254 (430)
|+++|..++..+..+....... .-.+..+.|..+++..+++++.. +|.++.|+.-.....+..+
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~-----a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell 929 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEA-----AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL 929 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcc-----hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee
Confidence 6777777666665554433210 12355566642333324444332 3446666654322212222
Q ss_pred eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc-cCcEEEEEEcCCCCEEEEEeCCCeEEE--EeCC
Q 014114 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRF--WDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~d~~v~i--wd~~ 331 (430)
...+-+-.-.+..|-..++++| ....+++||+-..++++...... ...|..+++ .+..++.|..--.|.+ |+-.
T Consensus 930 h~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 930 HKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred eccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 1111112223455666677666 55679999998777665544321 567788877 5667777764444444 4533
Q ss_pred CCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCCCC
Q 014114 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
.. .+..+ ........++++.+-..+..+.+..=|.+.+-..+...
T Consensus 1007 ~n-~l~~f-adD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1007 DN-QLIVF-ADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred CC-eEEEE-eCCCccceeeEEEEecCCceeeccccCcEEEEECCCcc
Confidence 33 33333 33343445778888777777777778888888776543
No 409
>PHA03098 kelch-like protein; Provisional
Probab=95.25 E-value=1.6 Score=42.55 Aligned_cols=185 Identities=12% Similarity=0.038 Sum_probs=85.7
Q ss_pred CCCEEEEecCCC------eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-----CcEEE
Q 014114 173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~ 241 (430)
++..++.|+.++ .+..||..+.+-.. +...... ......+.+ ++..++.|+.+ ..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~------R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~ 362 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYP------RKNPGVTVF----NNRIYVIGGIYNSISLNTVES 362 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcc------cccceEEEE----CCEEEEEeCCCCCEecceEEE
Confidence 455666676542 47788877654321 1111000 011222333 67777888765 34677
Q ss_pred EECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCC------CCEEEEEccCCeEE--eEEeccccCcEEEEEEcCC
Q 014114 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~~v~~i~~s~~ 312 (430)
||..+..= ....+...... .+++ .-+++..+.|+.+ ..+..||+.+.+-. ..+... ......+. .+
T Consensus 363 yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~--~~ 437 (534)
T PHA03098 363 WKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIY--HD 437 (534)
T ss_pred EcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEE--EC
Confidence 88775321 00111111111 1122 2356667777632 35888998765432 111111 11111222 25
Q ss_pred CCEEEEEeCC--------CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC-----CcEEEecCCC
Q 014114 313 LPIIASCGLD--------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND 376 (430)
Q Consensus 313 ~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d-----~~v~vw~~~~ 376 (430)
+.+++.|+.+ ..+.+||..+.+-.....+...... ...+. -++.+ +.|+.+ ..+.+||...
T Consensus 438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 6666777643 2388899887654332111111011 11122 25666 666654 3566666543
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.17 E-value=1.9 Score=37.28 Aligned_cols=151 Identities=15% Similarity=0.050 Sum_probs=87.0
Q ss_pred ceeEeEEeeCCCCCEEEEEe---CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEE-ccCC
Q 014114 215 WFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTG 290 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd-~~~~ 290 (430)
.+.+.+. ++++..++... ....++++.... .....+.+ ..+...+|++++...+....+...+++. ...+
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 3667777 88998777665 333455554433 22222333 3788889999987777666666667663 3333
Q ss_pred eEE-eEEeccc-cCcEEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CC--cee-eEEeeccccceeEEEeeecCCcc
Q 014114 291 KLL-GCFIGKC-SGSIRSIARHPTLPIIASCG---LDSYLRFWDIK---TR--QLL-SAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 291 ~~~-~~~~~~~-~~~v~~i~~s~~~~~l~s~~---~d~~v~iwd~~---~~--~~~-~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
+.. ..+.... ...|..+.+||||..++... .++.|.+--+. .+ ..+ ....+.......+.++.|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 322 1222210 22899999999998877665 35677776543 23 111 11111111123468999999999
Q ss_pred e-e-eecCCCcEEE
Q 014114 360 A-N-AAADAPMLEI 371 (430)
Q Consensus 360 ~-~-~~~~d~~v~v 371 (430)
+ + ....++.+..
T Consensus 179 L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 179 LVVLGRSAGGPVVR 192 (253)
T ss_pred EEEEeCCCCCceeE
Confidence 9 3 3334443333
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.15 E-value=3.1 Score=39.62 Aligned_cols=120 Identities=10% Similarity=-0.053 Sum_probs=71.1
Q ss_pred CceEEEEEcCC----CCEEEEecCCCeEEEEECCC-----CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 163 GTIAFSKVDIS----EKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 163 ~~i~~~~~~~~----~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
..|..+.|.|- ...|+...-...|.+|.+.. .+.+..-..+-.+.+. .--..+.| +|....|++-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p----vLpQGCVW--HPk~~iL~VL 130 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP----VLPQGCVW--HPKKAILTVL 130 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc----cCCCcccc--cCCCceEEEE
Confidence 46888999883 33444455666899998852 2222211111111111 12345678 7888888776
Q ss_pred eCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEcc
Q 014114 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR 288 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~ 288 (430)
.....-.+++++.....+..=-...+.|.|.+|.+||+.|+++- ..-.-+|||-.
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 66555566777654433322223357899999999998877654 33346788864
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.14 E-value=2.3 Score=42.06 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=74.9
Q ss_pred ceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC-------C----C--------cceEEeeecCCCeEEEEee--CCCCEE
Q 014114 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-------Q----R--------RPVMSFDFRETPIKAVAEE--PDSFNI 273 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-------~----~--------~~~~~~~~~~~~i~~~~~s--~~~~~l 273 (430)
.|+.+....=-+...|+.+..||.|.+|.+.+ . . +|...+.. ...+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEE
Confidence 34544432113456889999999999997631 0 0 12222222 3578999998 778899
Q ss_pred EEEcCCCCEEEEEccCC--eEEeEEeccccCcEEEEEEcCCC---C---EEEEEeCCCeEEEEeC
Q 014114 274 YIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTL---P---IIASCGLDSYLRFWDI 330 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~i~~s~~~---~---~l~s~~~d~~v~iwd~ 330 (430)
|+++....|.||-.... +....-...+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888865432 11111011125678999997743 2 7888899999998887
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.02 E-value=2.9 Score=38.56 Aligned_cols=223 Identities=12% Similarity=0.048 Sum_probs=100.3
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEee---ccC---CceEEEEEcCCCCEEEEe--c----CCCeEEEEECC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---CAS---GTIAFSKVDISEKFSLFG--G----KGVEVNVWDLD 192 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~---~~~---~~i~~~~~~~~~~~l~~~--~----~dg~v~iwd~~ 192 (430)
.++-+...+.|.|.|+...+... ...++.+. ... .....+..-|+|+.++++ . .-|-+.++|-+
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P----~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKP----RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-----EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred EEeeeeccCcEEEEECCCCCCCC----ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 45555688899999988655321 12222221 000 122334445678777764 2 23458888888
Q ss_pred CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC--------------------CCcEEEEECCCCCcceE
Q 014114 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--------------------DHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------------------dg~i~~wd~~~~~~~~~ 252 (430)
+.+.....+..... ...-...-| .|..+.+++... ..++.+||+...+ +++
T Consensus 166 tf~v~g~We~~~~~------~~~gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q 236 (461)
T PF05694_consen 166 TFEVKGRWEKDRGP------QPFGYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQ 236 (461)
T ss_dssp T--EEEE--SB-TT------------EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEE
T ss_pred cccccceeccCCCC------CCCCCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-Eee
Confidence 77776665543211 122344455 677777777643 3579999999844 577
Q ss_pred EeeecCC--CeEEEEe--eCCCCEEEEEc-CCCCEEEE-EccCCe----EEeEEecc----------------ccCcEEE
Q 014114 253 SFDFRET--PIKAVAE--EPDSFNIYIGN-GSGDLASV-DIRTGK----LLGCFIGK----------------CSGSIRS 306 (430)
Q Consensus 253 ~~~~~~~--~i~~~~~--s~~~~~l~~~~-~dg~v~iw-d~~~~~----~~~~~~~~----------------~~~~v~~ 306 (430)
.+..... ....|.| .|+..+=++|+ ....|..| ....++ .+..+... ...-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 7765432 3445666 44444444433 33444444 323332 22222211 0245799
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEeCCCC---ceeeEEeecccc-------------ceeEEEeeecCCcce
Q 014114 307 IARHPTLPIIASCG-LDSYLRFWDIKTR---QLLSAVFLKQHL-------------NEVVFDSAFADKEVA 360 (430)
Q Consensus 307 i~~s~~~~~l~s~~-~d~~v~iwd~~~~---~~~~~~~~~~~~-------------~~~i~~~~~s~~g~~ 360 (430)
|.+|.|.++|..++ .+|.|+.||+... +++..+.+.+.. .+-..-+..|-||+.
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkR 387 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKR 387 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSE
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeE
Confidence 99999999998777 7899999999763 445544443321 111255677888877
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.97 E-value=1.9 Score=39.78 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--Cce--eeeecCCCCCCCCcccCcceeEeEEeeCCC
Q 014114 163 GTIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (430)
.....|+|.++++++++-. ..+ .|.+++-.+ +.. ...+.... .....+++ .++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---------~~p~Gi~~--~~~ 82 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---------SMVTGLAV--AVG 82 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---------CCccceeE--ecC
Confidence 3456789999998777642 223 677775432 221 12222111 33567777 567
Q ss_pred CCEEEEEeCCCcEEEEECCCC-----Cc--ceEEeee----cCCCeEEEEeeCCCCEEEEEcCC----------------
Q 014114 227 HRKFVAGTNDHQVRLYDTSAQ-----RR--PVMSFDF----RETPIKAVAEEPDSFNIYIGNGS---------------- 279 (430)
Q Consensus 227 ~~~l~~~~~dg~i~~wd~~~~-----~~--~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d---------------- 279 (430)
+ ++ ++.....+++.|.... +. .+..+.. +......++|.|||.+.++-+..
T Consensus 83 G-ly-V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 83 G-VY-VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred C-EE-EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 7 44 4444433334354321 11 1111222 12447789999999766554421
Q ss_pred ---CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC
Q 014114 280 ---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 280 ---g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
|.|.-++...++.. .+... -.....++|+|+|.++++-..+
T Consensus 161 ~~~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCceEEEEecCCCeEE-EEecC-cCCCccceECCCCCEEEEccCC
Confidence 34555566544432 23222 3456789999999887765433
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.84 E-value=2.9 Score=37.81 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred eEEeeecCCCeEEEEeeC-------CCCEEEEEcCCCCEEEEEccCCeEEe---EEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 251 VMSFDFRETPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+..+..| ..+..+.|.. .+.+|++.-..+.|....+.....+. .+.......+..|++.|||.++++..
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 3334434 5666777753 44566666666778887776553322 22222244799999999998888887
Q ss_pred CCCeEE
Q 014114 321 LDSYLR 326 (430)
Q Consensus 321 ~d~~v~ 326 (430)
.+|.|+
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 788764
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.77 E-value=0.62 Score=46.50 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccC----------CeE--E-eEE-------eccccCcEEEEEEcCC---CCE
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKL--L-GCF-------IGKCSGSIRSIARHPT---LPI 315 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~----------~~~--~-~~~-------~~~~~~~v~~i~~s~~---~~~ 315 (430)
..|..|.++|+|.+++..+..|. .|..+.. ++. . .++ ..+....|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36888999999999999888764 4433321 111 1 111 1122568999999996 478
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 014114 316 IASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 316 l~s~~~d~~v~iwd~~~~ 333 (430)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888899999999999753
No 417
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.54 E-value=3.1 Score=36.71 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=89.5
Q ss_pred eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC---CEEEE-EeCCCcEEEEECCCCCcceEEeeec---
Q 014114 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVA-GTNDHQVRLYDTSAQRRPVMSFDFR--- 257 (430)
Q Consensus 185 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~--- 257 (430)
+|.+||+.+++.++.+.-+..-.. ....+..+.+...+.. .++.. =...+-|.++|+.+++. .+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~---~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP---PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcc---cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcce
Confidence 678899999988877765432221 2356788887422221 23333 33446899999988542 2222111
Q ss_pred ----------------CCCeEEEEeeC---CCCEEEEEcCCCCEEEEEccC-----Ce---------EEeEEeccccCcE
Q 014114 258 ----------------ETPIKAVAEEP---DSFNIYIGNGSGDLASVDIRT-----GK---------LLGCFIGKCSGSI 304 (430)
Q Consensus 258 ----------------~~~i~~~~~s~---~~~~l~~~~~dg~v~iwd~~~-----~~---------~~~~~~~~~~~~v 304 (430)
...+..++.+| +++.|+-....+. ++|.+.+ .. .+..+ +......
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 12355666654 5566665554432 3443322 00 11111 2112356
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeeEEeeccccceeEEEeeecC--Ccce
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTR---QLLSAVFLKQHLNEVVFDSAFAD--KEVA 360 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~i~~~~~s~--~g~~ 360 (430)
..++++++|.++++--..+.|..|+.... +.+..+......-..+.++.+.+ +|.+
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L 249 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL 249 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence 67889999998888889999999998751 12233222222122357778877 6666
No 418
>PRK13684 Ycf48-like protein; Provisional
Probab=94.52 E-value=3.6 Score=37.32 Aligned_cols=156 Identities=11% Similarity=-0.022 Sum_probs=88.7
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEE-ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLY-DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~w-d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
..+..+.+ .+++.++++ +..|.+..- |- .++.-..........++++.+.++++.+++| ..|.+.+=....+..
T Consensus 173 g~~~~i~~--~~~g~~v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRR--SPDGKYVAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEE--CCCCeEEEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45778888 677766555 455655432 21 1121111122234578999999999877766 556554323334433
Q ss_pred EeEEecc---ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcE
Q 014114 293 LGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPML 369 (430)
Q Consensus 293 ~~~~~~~---~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v 369 (430)
-.....+ ....+.++.+.+++..++ ++.+|.|. .....++.-.............+.+.|..++..+.++..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 2221111 134578899999877555 44677555 444445543332111122223578888888878888888998
Q ss_pred EEecCCC
Q 014114 370 EIQNGND 376 (430)
Q Consensus 370 ~vw~~~~ 376 (430)
-.|+...
T Consensus 326 l~~~~~~ 332 (334)
T PRK13684 326 LRYVGSA 332 (334)
T ss_pred EEecCCC
Confidence 8876543
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.51 E-value=0.18 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q 014114 302 GSIRSIARHPTL---PIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 302 ~~v~~i~~s~~~---~~l~s~~~d~~v~iwd~~~ 332 (430)
+.|+++.|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788888889999999985
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.49 E-value=0.16 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCeEEEEeeCCC---CEEEEEcCCCCEEEEEccC
Q 014114 259 TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 259 ~~i~~~~~s~~~---~~l~~~~~dg~v~iwd~~~ 289 (430)
+.++++.|+|.. .+|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999854 4888887889999999985
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.48 E-value=4.1 Score=37.84 Aligned_cols=80 Identities=14% Similarity=0.031 Sum_probs=50.9
Q ss_pred eeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC-eEEEEeeC----------------C-CC-EEEEE
Q 014114 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEP----------------D-SF-NIYIG 276 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-i~~~~~s~----------------~-~~-~l~~~ 276 (430)
+.++.. +|++++.++...=|.|.++|+..+. .++.+++-.+. +.-+.... . .. +++-+
T Consensus 310 ~~~i~~--sP~~~laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 310 GESICL--SPSGRLAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred EEEEEE--CCCCCEEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 556666 8999999998888999999998754 35555542211 11111100 0 11 22335
Q ss_pred cCCCCEEEEEccCCeEEeEEec
Q 014114 277 NGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~ 298 (430)
-.-|.|.||.+++|..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5678899999999888777654
No 422
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.44 E-value=6.4 Score=39.95 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=148.5
Q ss_pred CCCcceEeecCCCcEEEEEecCccCCcchhheec-CCCCcceEEEEeccCCC-C-CCceEEEEccCCeEEEeccC-CCce
Q 014114 12 CPPLRALTFDSLGLIKVIEARGEDGGVPKVVERW-GDPHSSKCVLAASIDDS-Q-NDPLLAVARKNGLTDILNPL-NGDL 87 (430)
Q Consensus 12 ~p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-p-~g~~l~~g~~dg~i~iwd~~-~~~~ 87 (430)
|....++.++.++.+...++..+ .+.... ...+..+.|+.+++.+. | -.+++++|..+..+.+.-.. +...
T Consensus 497 ~n~sqVvvA~~~~~l~y~~i~~~-----~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 497 ANASQVVVAGGGLALFYLEIEDG-----GLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred ecceEEEEecCccEEEEEEeecc-----ceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 33445566666566666666653 111111 12345666777776321 1 12378888877766555332 2222
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEE
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+..... ...--...+.-..+.. +.++|+++..||.+.-+-+....-.- + ..+.-.+. ..++.-
T Consensus 572 ~~~~~l----~~~~iPRSIl~~~~e~--------d~~yLlvalgdG~l~~fv~d~~tg~l-s---d~Kk~~lG-t~P~~L 634 (1096)
T KOG1897|consen 572 ITHEQL----SGEIIPRSILLTTFEG--------DIHYLLVALGDGALLYFVLDINTGQL-S---DRKKVTLG-TQPISL 634 (1096)
T ss_pred eeeecc----CCCccchheeeEEeec--------cceEEEEEcCCceEEEEEEEcccceE-c---cccccccC-CCCcEE
Confidence 221111 0000012232222221 24589999999999888765432110 0 00000011 123333
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeE-eEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
-.|+..+..-+.+..|.-..+|.-+..-+...+.... +.. +.|..+.-...++++ ..+.+.+.-+..
T Consensus 635 r~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-----------v~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 635 RTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-----------VNHMCPFNSDAYPDSLASA-NGGALTIGTIDE 702 (1096)
T ss_pred EEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-----------hhhhcccccccCCceEEEe-cCCceEEEEecc
Confidence 3444333332333444444445432221111111111 111 122111122345554 345667666654
Q ss_pred CCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCC--------------CCEEEEEccCCeEEeEEeccc---cCcEEEEE
Q 014114 247 QRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGCFIGKC---SGSIRSIA 308 (430)
Q Consensus 247 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~v~iwd~~~~~~~~~~~~~~---~~~v~~i~ 308 (430)
-++ .++++..+ ...+.+++.+....+++.+.. ..++++|-++.+.+....-.. ...|.++.
T Consensus 703 iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~ 781 (1096)
T KOG1897|consen 703 IQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCK 781 (1096)
T ss_pred hhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeee
Confidence 222 23343333 455667776644444443321 126777777766554332211 23455566
Q ss_pred EcCC-CCEEEEEe----------CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 309 RHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 309 ~s~~-~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
|..| +.+++.|. ..|.|.||.+..++.+..+. .-...+.+.++.- -+|+ +.++-...|++|+....
T Consensus 782 ~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~-e~~v~Gav~aL~~-fngk-llA~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 782 FTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA-ETVVKGAVYALVE-FNGK-LLAGINQSVRLYEWTTE 858 (1096)
T ss_pred ecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee-eeeeccceeehhh-hCCe-EEEecCcEEEEEEcccc
Confidence 8877 66777764 24678888777644444321 1111222333332 1344 44445568888887665
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.36 E-value=2.6 Score=35.10 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=61.6
Q ss_pred eeEeEEeeCCCCCEE-EEEeCCCcEEEEE--CCCCC----cceEEeee----cCCCeEEEEeeCCCCEEEEEcCCCCEEE
Q 014114 216 FTSAAFLSIDDHRKF-VAGTNDHQVRLYD--TSAQR----RPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 216 v~~~~~~~~~~~~~l-~~~~~dg~i~~wd--~~~~~----~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~v~i 284 (430)
-+.++| +.+.+.+ ++-+.+-.|.-|| ..++. +.+..++. ....--.+++..+|++.++.-..++|..
T Consensus 160 sNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred Cccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 356788 4555544 4455677787777 44432 11222221 1111223445667888888888899999
Q ss_pred EEccCCeEEeEEeccccCcEEEEEEcC
Q 014114 285 VDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 285 wd~~~~~~~~~~~~~~~~~v~~i~~s~ 311 (430)
.|..+|+.+.+++-. ...|++++|--
T Consensus 238 ~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 999999999999887 88999999953
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.34 E-value=4.4 Score=37.68 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=142.9
Q ss_pred CCceEEEEccCCeEEEeccCCCce-----eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
+...|++|+..|.++||+...+.. +.+.+. ..+|..+..=.-.. ......++...-..+.||
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---------~~PILqv~~G~F~s----~~~~~~LaVLhP~kl~vY 102 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---------KDPILQVECGKFVS----GSEDLQLAVLHPRKLSVY 102 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---------CCcEEEEEeccccC----CCCcceEEEecCCEEEEE
Confidence 456899999999999999854431 111111 14666555422100 012355666777889999
Q ss_pred Eeeeeccc--ccCCcceeeEEeeccCCceEEEEEcC----C-CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 139 SIEVTKVS--AESSCSTVKSWNVCASGTIAFSKVDI----S-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 139 ~~~~~~~~--~~~~~~~i~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
.+...... .+..-..-.++..........++.-| . ..+|.+-+.||.+.+|+-+.......+....
T Consensus 103 ~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l------- 175 (418)
T PF14727_consen 103 SVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL------- 175 (418)
T ss_pred EEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-------
Confidence 98443221 01111111223322233344444433 2 4678888999999999976644433333311
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC--------------------CCc--ceEEeeecCCCeEEE---Ee
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--------------------QRR--PVMSFDFRETPIKAV---AE 266 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--------------------~~~--~~~~~~~~~~~i~~~---~~ 266 (430)
.|+ .+.| .+.-..|++++.+..+.-|.... +++ +-..+... ..+..+ .+
T Consensus 176 lPg---Pl~Y--~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-E~~l~i~v~~~ 249 (418)
T PF14727_consen 176 LPG---PLCY--CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-EQALDIQVVRF 249 (418)
T ss_pred CCc---CeEE--eecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-ceeEEEEEEEc
Confidence 122 3566 45667788888888888876421 011 11122211 223333 33
Q ss_pred eCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEE-EE------cCCC-CEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-AR------HPTL-PIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 267 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i-~~------s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
+.....+++-+ ...+.+.+. +|......+- +....++ .| .+.. ..++.++.++++.||. ..+++..
T Consensus 250 ~~~~~~IvvLg-er~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~Ws 323 (418)
T PF14727_consen 250 SSSESDIVVLG-ERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWS 323 (418)
T ss_pred CCCCceEEEEe-cceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEe
Confidence 22222333332 334555554 4544433332 1111221 12 1221 2588889999999995 3455554
Q ss_pred EeeccccceeEEEee-ec-CCcceeeecCCCcEEEecCCC
Q 014114 339 VFLKQHLNEVVFDSA-FA-DKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 339 ~~~~~~~~~~i~~~~-~s-~~g~~~~~~~d~~v~vw~~~~ 376 (430)
..+ ....+...++ |. .+|.+++-+.+|.|.+-=+-+
T Consensus 324 A~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 324 AQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred cCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 322 2122222222 22 255558888899988865554
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=1.5 Score=40.23 Aligned_cols=137 Identities=10% Similarity=0.080 Sum_probs=85.6
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-CC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PP 203 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~ 203 (430)
..+.+...|.+.-|-+.... +.....++....++|.++.|++|.+.||+--.+++|.+++....+...... .+
T Consensus 35 kqlfavrSggatgvvvkgpn------dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c 108 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPN------DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC 108 (657)
T ss_pred ceEEEEecCCeeEEEEeCCC------CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence 45555555666666554222 234445666677899999999999999999999999999984333221111 11
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 277 (430)
... ...|....|. . ..-+|.....| +-+|-....++.++..+.|+..|.-..|.++.+.++.++
T Consensus 109 k~k------~~~IlGF~W~--~-s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 109 KTK------NANILGFCWT--S-STEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ccC------cceeEEEEEe--c-CeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 111 1337777773 3 34455554443 566766655555666677777888888888776554443
No 426
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.28 E-value=3.1 Score=35.62 Aligned_cols=209 Identities=10% Similarity=-0.045 Sum_probs=128.8
Q ss_pred cceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE
Q 014114 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
+.....|-+..+..-..++-.|+|..-+++...+.|--.|..+++....--+.. ..-..+.. .||+..-
T Consensus 50 ~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------a~Phgiv~--gpdg~~W 118 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------ASPHGIVV--GPDGSAW 118 (353)
T ss_pred CCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---------CCCceEEE--CCCCCee
Confidence 344455665666777888889999999998888888888998888755433322 22233444 6777666
Q ss_pred EEEeCCCcEEEEECCCCCcceEEee----ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEE
Q 014114 231 VAGTNDHQVRLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 231 ~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (430)
++-+.. .|.-+|-.+.+ +..|. ..........|.+.|++-+++.. |.---.|.. ...+..+.......-+.
T Consensus 119 itd~~~-aI~R~dpkt~e--vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyG 193 (353)
T COG4257 119 ITDTGL-AIGRLDPKTLE--VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYG 193 (353)
T ss_pred EecCcc-eeEEecCcccc--eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcc
Confidence 553333 55556665543 33332 12456778899999988888752 221112221 12334444333556788
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|+..|+|..-++.-.+..|-..|..++... .+..+.....-...+--+|.|.. ++....+.++.||...
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 999999998888777788888888776332 22122111111245556778888 7777777777777654
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.85 Score=46.51 Aligned_cols=134 Identities=10% Similarity=-0.014 Sum_probs=80.4
Q ss_pred CCCCCEEE--EEeCCCcEEEEECCCCCcc----eEEeeec------CCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCC
Q 014114 224 IDDHRKFV--AGTNDHQVRLYDTSAQRRP----VMSFDFR------ETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 224 ~~~~~~l~--~~~~dg~i~~wd~~~~~~~----~~~~~~~------~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~ 290 (430)
.+|....+ ..+.+-.|..||++..... ...+..| ..-..++.|+|.-. ..++...|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 45654433 3344558899998753211 1111112 22455677877542 3456668888888877533
Q ss_pred eE-EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec-cccceeEEEeeecCCcce
Q 014114 291 KL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 291 ~~-~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~ 360 (430)
.. ...+.- ....++++|+|.|+.++.|-..|++.-|... ++....+.-+ ......|.+++|-....+
T Consensus 189 ~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 189 AQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 22 223332 5678999999999999999999999988753 4433332111 111234788888766655
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.21 E-value=1.6 Score=40.69 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=87.4
Q ss_pred CCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-------CEEEEEeCCCcEEEEEC
Q 014114 173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 173 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~dg~i~~wd~ 244 (430)
+..+|+ .|+....++-.|++.|+.+-....+.. + -+.| .|.. ..-++|-.+..|.-.|.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy--~p~~kf~qmt~eqtlvGlS~~svFrIDP 544 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQY--NPYFKFQQMTDEQTLVGLSDYSVFRIDP 544 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeec--CCchhHHhcCccceEEeecccceEEecc
Confidence 344444 456666788888888988877766532 2 3344 3322 12334555666777777
Q ss_pred CCCCcceEEeeec----CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 245 SAQRRPVMSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 245 ~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+-....+...... .....|..-..+ .++++++..|.|++||--..+....+++. ...|..|..+.+|.++++.+
T Consensus 545 R~~gNKi~v~esKdY~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 545 RARGNKIKVVESKDYKTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred cccCCceeeeeehhccccccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEee
Confidence 6533222222211 122233333333 49999999999999996443444445555 78899999999999887766
Q ss_pred CCCeEEEEeCC
Q 014114 321 LDSYLRFWDIK 331 (430)
Q Consensus 321 ~d~~v~iwd~~ 331 (430)
. ..+.+-|++
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 4 467777764
No 429
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=3.5 Score=35.63 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=92.7
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC-CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC--
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-- 290 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-- 290 (430)
+.+..+.+ .++++..+..+.-+++.|+.++..|...-.... +.-.++.. .|++..++..|.-+.+.|+.+.
T Consensus 87 ~l~~Dv~v----se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRV----SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEe----cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 44667777 567888888888999999999887655433322 34445554 5779998886766788888754
Q ss_pred -eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCc
Q 014114 291 -KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPM 368 (430)
Q Consensus 291 -~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~ 368 (430)
++...+... ...-..++. .|++-..+..|+-+.|-|+.+.....-+ -....+.-+.++..+++--+++....|.
T Consensus 161 P~lagrya~~-~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n~g~g~~sv~vsdnr~y~vvy~egv 235 (370)
T COG5276 161 PQLAGRYALP-GGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYNTGPGTYSVSVSDNRAYLVVYDEGV 235 (370)
T ss_pred ceeeeeeccC-CCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEE-EEEecCCceEEEEecCCeeEEEEcccce
Confidence 344445443 444466777 4667777778999999999765433221 1112222356666666655555544443
No 430
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.99 E-value=6.8 Score=38.47 Aligned_cols=259 Identities=9% Similarity=0.042 Sum_probs=133.6
Q ss_pred CCCCCCceEEEEccCCeEEEeccC-CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCe-eEE
Q 014114 60 DDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK-ASM 137 (430)
Q Consensus 60 ~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~v 137 (430)
+.+|+...+-.|=....|.-|=+. +-+++..+.. +...-|.|+..+.... .....+.|-.++. .++
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi-------~pt~iV~~~dV~~~~~-----~~~~~~~glt~rKk~~l 101 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPI-------SPTTIVECCDVLEKSD-----GKKLYCVGLTERKKFKL 101 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeecc-------CcCceEEEEEeEecCC-----CcEEEEEEEeeCCeeEE
Confidence 346666666666555555544332 4566666554 2234566777665443 2335666644444 455
Q ss_pred EEeeeecc---cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee--eecCCCCCCCCccc
Q 014114 138 RSIEVTKV---SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT 212 (430)
Q Consensus 138 ~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~ 212 (430)
-.+..... ...........+.+.....|..+.|.+++..+++...+|.|.+||...+.... .+... ....+.+
T Consensus 102 l~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~--~~~~v~y 179 (670)
T PF10395_consen 102 LLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLK--SSINVSY 179 (670)
T ss_pred EEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccc--cccceeh
Confidence 55554411 11122234445555567889999999999999999999999999993322211 11111 1111111
Q ss_pred CcceeEeEEeeCCCCCEEEEEeC-C---CcEEEEECCCCCcceEEee---ecCCCeEEEEeeC-CCCEEEEEcCCCCEEE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEP-DSFNIYIGNGSGDLAS 284 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~-d---g~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i 284 (430)
...|..... .....++++.+. + -..+++.+......+..+. .+........|.- +|.+..- .++.|.+
T Consensus 180 s~fv~~~~~--~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ 255 (670)
T PF10395_consen 180 SKFVNDFEL--ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISS 255 (670)
T ss_pred hhhhccccc--ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEE
Confidence 122222221 112334443333 2 2466777732222233332 2222222223322 4533332 6778999
Q ss_pred EEccCCeEEeEEecc---cc--CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 285 VDIRTGKLLGCFIGK---CS--GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 285 wd~~~~~~~~~~~~~---~~--~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
|++...+...++.-. .. ..+.++.--...+.|++. ++.|++.|+.-...+..
T Consensus 256 ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~--~nkIyLld~~~~siLse 312 (670)
T PF10395_consen 256 YSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSV--NNKIYLLDLKFESILSE 312 (670)
T ss_pred EEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEc--CCEEEEEeehhhhhhhh
Confidence 999888776665421 01 234444332234455544 57899999865544444
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.87 E-value=2.1 Score=32.26 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=70.5
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-----CCCEEEEecCCCeEEEEECCCCceeee
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.|++++..|++.|.+...........+..+++.++ ...|++++-.+ ....|+.|+.. .|..||+.....++.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFY 88 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhh
Confidence 68888899999999887665544446677888876 46777776543 35677777766 699999987665544
Q ss_pred ecCCCCCCCCcccCcceeEeEEee-CCCCCEEEEEeCCCcEEEEECCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
-..+ +.++++.+-. .....-++..+.+..|.-||...
T Consensus 89 ke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 89 KEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred hhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 3332 4466665521 11123344445567777777664
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.57 E-value=1 Score=44.39 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=74.1
Q ss_pred ceEEEEEcC--CCCEEEEecCCCeEEEEECCCCc-----e---ee--eecCCCCCCCCcccCcceeEeEEeeCCCCCEEE
Q 014114 164 TIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE-----K---IW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 164 ~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~-----~---~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
.|.-|.... +...|+.+..||.|.+|.+++-. . .. .....-...+.......+.+++++.....++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 355554433 56788999999999999774310 0 00 000000111222234567888884226677888
Q ss_pred EEeCCCcEEEEECCC--CCcceEEeeecCCCeEEEEeeCCC-----C-EEEEEcCCCCEEEEEc
Q 014114 232 AGTNDHQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDI 287 (430)
Q Consensus 232 ~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~s~~~-----~-~l~~~~~dg~v~iwd~ 287 (430)
+++....|.||-... .+.....-..+...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888775543 121111111255678899996543 2 7888889999999887
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=3.5 Score=33.74 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=96.1
Q ss_pred CCCEEEEecC--CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE-EEEeCCCcEEEEECCCCCc
Q 014114 173 SEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 173 ~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~ 249 (430)
++.++.+.+. ...|++||+.+++.+.+........++ ..++. -+..+ +..=.+|.-..+|.++-+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg----EGit~-------~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG----EGITK-------LGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc----cceee-------ccceEEEEEeccceeEEEChHHhhh
Confidence 4455555543 346999999999988776554222111 11111 12222 2233677888899887553
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeE----EeccccCcEEEEEEcCCCCEEEEEeCCCeE
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC----FIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v 325 (430)
+..+... +.-..++ .|+..|+.+....+++.-|.++.....+ +.+..-..++-+.| -+|.+.|-.=.+..|
T Consensus 124 -lg~~~y~-GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I 198 (262)
T COG3823 124 -LGRFSYE-GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRI 198 (262)
T ss_pred -hcccccC-Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecce
Confidence 4333321 2234443 4566677776666777777766443332 22221222333444 255555555455566
Q ss_pred EEEeCCCCceeeEEeec---------cccceeEEEeeecCCcc-e-eee
Q 014114 326 RFWDIKTRQLLSAVFLK---------QHLNEVVFDSAFADKEV-A-NAA 363 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~---------~~~~~~i~~~~~s~~g~-~-~~~ 363 (430)
...|..+|+.+..+.+. .....+...+++.|++. + ++|
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66777777777665432 22244678889998874 4 444
No 434
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.24 E-value=4.9 Score=34.52 Aligned_cols=152 Identities=13% Similarity=0.026 Sum_probs=88.7
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCC--cEEEEECCCCCcceEEeeec-CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
.....+.| ..++.++-+.+.-| .|+.+|+.+++. ....... ..---.++...+ +.....=.++...+||..+.
T Consensus 45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKV-LQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSE-EEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTT
T ss_pred ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccc
Confidence 44567777 45778888888777 789999999763 3333322 222233444433 33333447788999999999
Q ss_pred eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccce--eEEEeeecCCcce-eeecCCC
Q 014114 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE--VVFDSAFADKEVA-NAAADAP 367 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~-~~~~~d~ 367 (430)
+.+.++.- .+.=+.++. ++..|+.......++++|..+.+....+........ .+..+.|- +|.+ +-.=...
T Consensus 121 ~~~~~~~y--~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 121 KKIGTFPY--PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEEEE---SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred eEEEEEec--CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 99988875 345677774 677777777778899999998888777654422111 24555654 4444 3333333
Q ss_pred cEEEecC
Q 014114 368 MLEIQNG 374 (430)
Q Consensus 368 ~v~vw~~ 374 (430)
.|..-|.
T Consensus 196 ~I~~Idp 202 (264)
T PF05096_consen 196 RIVRIDP 202 (264)
T ss_dssp EEEEEET
T ss_pred eEEEEeC
Confidence 3443333
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.24 E-value=0.81 Score=38.48 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=42.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEE------ee-------ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc
Q 014114 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 225 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~ 288 (430)
.+++++++.+.+|.+++||+.+.+..+.. +. .....|..+.++.+|.-|++- .+|..+.|+..
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 37888999999999999999986542222 11 233567777777777655554 34667777764
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.18 E-value=0.79 Score=38.53 Aligned_cols=69 Identities=14% Similarity=0.001 Sum_probs=49.7
Q ss_pred eCCCCEEEEEcCCCCEEEEEccCCeEEeEE-------ec------cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------IG------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 267 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~------~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
..++.+|++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 346789999999999999999988765432 11 1256788888888887666655 577888886544
Q ss_pred cee
Q 014114 334 QLL 336 (430)
Q Consensus 334 ~~~ 336 (430)
.-+
T Consensus 98 ~W~ 100 (219)
T PF07569_consen 98 CWI 100 (219)
T ss_pred eeE
Confidence 433
No 437
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.08 E-value=6.9 Score=35.76 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=113.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCce--EEE-EccC---CeEEEeccCC--Cc
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPL--LAV-ARKN---GLTDILNPLN--GD 86 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~--l~~-g~~d---g~i~iwd~~~--~~ 86 (430)
.++++.++++-+.+||+.+ +.++.+.. +...-+.+.+...-.|+. |++ ...+ .+|++|.+.. +.
T Consensus 69 SlIigTdK~~GL~VYdL~G------k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDG------KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-------EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ceEEEEeCCCCEEEEcCCC------cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 4677888888999999998 55666632 122222222211112222 333 3332 4699997752 32
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
+..+.... .........+..++++.... ...-+.+....+|.+..|.+....... .....+|.+.+ ...+.
T Consensus 141 -L~~v~~~~-~p~~~~~~e~yGlcly~~~~----~g~~ya~v~~k~G~~~Qy~L~~~~~g~-v~~~lVR~f~~--~sQ~E 211 (381)
T PF02333_consen 141 -LTDVTDPA-APIATDLSEPYGLCLYRSPS----TGALYAFVNGKDGRVEQYELTDDGDGK-VSATLVREFKV--GSQPE 211 (381)
T ss_dssp -EEE-CBTT-C-EE-SSSSEEEEEEEE-TT----T--EEEEEEETTSEEEEEEEEE-TTSS-EEEEEEEEEE---SS-EE
T ss_pred -ceEcCCCC-cccccccccceeeEEeecCC----CCcEEEEEecCCceEEEEEEEeCCCCc-EeeEEEEEecC--CCcce
Confidence 22222100 01112223567788876432 122377778889999999886533211 11235666665 45788
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCC-----CceeeeecCCCCCCCCcccCcceeEeEEeeCCCC--CEEEEEeCCCcE
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQV 239 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i 239 (430)
.+.......+|+.+-++.-|.-|+.+. +..+....+.. + ..-|..++.....++ .+|++.-.+++.
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~---l----~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG---L----VADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS---B-----S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc---c----ccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 999998888999999998888888752 22222222111 0 134666666533443 345555567789
Q ss_pred EEEECCCCCcceEEe
Q 014114 240 RLYDTSAQRRPVMSF 254 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~ 254 (430)
.+|+.......+..|
T Consensus 285 ~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 285 AVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEESSTT--EEEEE
T ss_pred EEEecCCCCcccceE
Confidence 999987643333333
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.80 E-value=8.2 Score=35.86 Aligned_cols=143 Identities=10% Similarity=-0.054 Sum_probs=80.5
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcc-eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe-----EEeEEe
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-----LLGCFI 297 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~ 297 (430)
.+++.+++.+..-..++-||--. .. ...-......++.+.+.+++..++++ ..|.+ ++....++ ......
T Consensus 247 ~~dG~~~~vg~~G~~~~s~d~G~--~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~ 322 (398)
T PLN00033 247 SPDGDYVAVSSRGNFYLTWEPGQ--PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEAD 322 (398)
T ss_pred cCCCCEEEEECCccEEEecCCCC--cceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecc
Confidence 56776666654433233344321 10 11111224578899999999887766 55654 33443443 122222
Q ss_pred cc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 298 GK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 298 ~~-~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
.. ....+.++.|.+++..+++| ..|.+.... ..|+.-............++.+.|.++++....+.+|.|.-|
T Consensus 323 ~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 323 IKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 11 12458999999887755554 677666653 445543331111222233689999888888777888887665
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.79 E-value=6.6 Score=34.80 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=60.4
Q ss_pred eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC
Q 014114 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD-IKTR 333 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd-~~~~ 333 (430)
......+..+..+++|++++++..-....-||.-...-...-... ...|.+|.|.|++.+.+.+ ..|.|++=+ ....
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc-cceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 334567888889999999988866555567775422111112222 6789999999998766654 888888887 2223
Q ss_pred ceeeEEeecccccee-EEEeeecCCcceeeecCCCcEEE
Q 014114 334 QLLSAVFLKQHLNEV-VFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~-i~~~~~s~~g~~~~~~~d~~v~v 371 (430)
+.......+...... +.+++|.+++...+++..|.|.+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 322221112112233 79999999999944555555544
No 440
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=1.5 Score=40.89 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=52.7
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEc---------cCCeEEeEEe----------ccccCcEEEEEEcCCC---CEEE
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDI---------RTGKLLGCFI----------GKCSGSIRSIARHPTL---PIIA 317 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~---------~~~~~~~~~~----------~~~~~~v~~i~~s~~~---~~l~ 317 (430)
.|..+..++.|..++..+.+|.+.++=. +.++.....+ ....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4667788999999999999996555431 2232211111 1112357788999976 5777
Q ss_pred EEeCCCeEEEEeCCCCceee
Q 014114 318 SCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~~~~~ 337 (430)
.-+.|..||+||+.....++
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 78889999999998766554
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.52 E-value=8.8 Score=38.65 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCC----------Ccee---eeecCCCCCCCCcccCcceeEeEEeeC-CCCCE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDK----------CEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRK 229 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~----------~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~ 229 (430)
.|..+.++|+|.+|+..|..| |.|..+.. +... ..+.-. ...+.......|..+.|+|. .++..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhccCCCCceEEEEEEcCCCCCCCe
Confidence 577889999999999888876 44444432 1110 111100 00111112356889999542 23678
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEee
Q 014114 230 FVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 230 l~~~~~dg~i~~wd~~~~~~~~~~~~ 255 (430)
|++-+.|+++++||+.....+...+.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 88889999999999987665555443
No 442
>PRK10115 protease 2; Provisional
Probab=92.50 E-value=13 Score=37.52 Aligned_cols=194 Identities=7% Similarity=0.015 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCEEEEec-----CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC---
Q 014114 165 IAFSKVDISEKFSLFGG-----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--- 236 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--- 236 (430)
+..+.++|++++|+.+. ....|++.|+.++..+...... . -..++| .++++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----------~-~~~~~w--~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----------V-EPSFVW--ANDSWTFYYVRKHPVT 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----------c-ceEEEE--eeCCCEEEEEEecCCC
Confidence 55678899999888653 2335888899877533221111 1 135788 6777766655432
Q ss_pred ---CcEEEEECCCCC-cceEEeeecCCCeE-EEEeeCCCCEEEEEcC---CCCEEEEEcc--CCeEEeEEeccccCcEEE
Q 014114 237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGNG---SGDLASVDIR--TGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 237 ---g~i~~wd~~~~~-~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~---dg~v~iwd~~--~~~~~~~~~~~~~~~v~~ 306 (430)
..|+.+++.++. .....+........ .+..+.++++++..+. ++.+.+++.. .+.....+... ......
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 274 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-KDHEYS 274 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-CCCEEE
Confidence 367888888763 22334443333333 3333447777665543 3568888843 33322222221 222233
Q ss_pred EEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecC
Q 014114 307 IARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~ 374 (430)
+. +..+.+++....+ ..|...++........+ +.......+..+.+..+.-+++...++.-+++-.
T Consensus 275 ~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l-~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 275 LD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEEL-IPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEE-ECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 32 3333333333222 23444444421111221 2222233467777764422266666666555443
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=92.49 E-value=11 Score=36.36 Aligned_cols=145 Identities=9% Similarity=-0.059 Sum_probs=69.7
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC--CcEEEEECC
Q 014114 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTS 245 (430)
Q Consensus 173 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~~wd~~ 245 (430)
++..+++|+.++ .+..||..+..-...-...... .....+.. ++...++|+.+ ..+..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-------~~~~~v~~----~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-------LYASGVPA----NNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-------hcceEEEE----CCEEEEECCcCCCCceEEEECC
Confidence 455666676542 4677887765422211111100 11222233 67777777754 357788876
Q ss_pred CCC-cceEEeeecCCCeEEEEeeCCCCEEEEEcCCC---CEEEEEccCCeEEe--EEeccccCcEEEEEEcCCCCEEEEE
Q 014114 246 AQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 246 ~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
+.. ..+..+.........+ .-+++..+.|+.++ .+..||..+.+-.. .+... ......+. -++++.+.|
T Consensus 340 ~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~--~~~~IYv~G 414 (480)
T PHA02790 340 DAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALV--FGRRLFLVG 414 (480)
T ss_pred CCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccceEEE--ECCEEEEEC
Confidence 532 1111111111111122 23577777777553 47788887654322 11111 11112222 256666666
Q ss_pred eCCCeEEEEeCCCCcee
Q 014114 320 GLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~~~ 336 (430)
+ .+.+||..+.+-.
T Consensus 415 G---~~e~ydp~~~~W~ 428 (480)
T PHA02790 415 R---NAEFYCESSNTWT 428 (480)
T ss_pred C---ceEEecCCCCcEe
Confidence 3 4778888766543
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.48 E-value=0.28 Score=48.49 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=100.0
Q ss_pred cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC
Q 014114 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 207 (430)
.-|.+.||+++.-.- ..-..-.+..-+ .-+..+.-+.|.| +.-++..+-.++.|++.++.+... ..+..|....
T Consensus 151 ~vg~lfVy~vd~l~G-~iq~~l~v~~~~-p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~ 227 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQG-EIQPQLEVTPIT-PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRV 227 (1283)
T ss_pred HhhhhheeehHhhcc-ccccceEEeecC-cCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCc
Confidence 346788888764210 000000111111 1233445555554 667788888889998888765433 2233344332
Q ss_pred CCccc-CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC-C---cceEEeeecC-CCeEEEEeeCCC---------CE
Q 014114 208 LGIFT-PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-R---RPVMSFDFRE-TPIKAVAEEPDS---------FN 272 (430)
Q Consensus 208 ~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~---~~~~~~~~~~-~~i~~~~~s~~~---------~~ 272 (430)
..+.. ...+.-++-. +|||..|+.++.||.++.|-+.-. + +++...+.|. .+-.|.-++.+. .+
T Consensus 228 ~d~a~~~~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~ 306 (1283)
T KOG1916|consen 228 TDMAFFAEGVLKLASL-SPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVL 306 (1283)
T ss_pred ccHHHHhhchhhheee-CCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEE
Confidence 22110 0111111112 899999999999999888865421 1 1344555565 333333343321 24
Q ss_pred EEEEcC-CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC------------EEEEEeCCCeEEEEeC
Q 014114 273 IYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP------------IIASCGLDSYLRFWDI 330 (430)
Q Consensus 273 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~------------~l~s~~~d~~v~iwd~ 330 (430)
+++++. ...+++|.....+|+..+. ...|..+. -+++. .+++-+.|+.|.+|--
T Consensus 307 ~Itttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 307 RITTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred EEecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 455543 4568999988777762221 23444444 33332 2344567788888853
No 445
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=5.7 Score=39.03 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 258 ~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
.+.+..+.+||+.++|+.-...|.|.+-+....+.+..+......+.-.++|.-+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 3577888999999999999999999999888777776665321233335566443
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=7.8 Score=40.70 Aligned_cols=164 Identities=10% Similarity=0.039 Sum_probs=90.6
Q ss_pred EccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCC
Q 014114 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (430)
Q Consensus 71 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~ 150 (430)
.+.|..+.+|+++++.....+.+.. ..|..+.++.+.+.--.+.-.+++....--.+.++-+..........
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~s--------htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLS--------HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchh--------hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 4467899999999977777776633 35666666665542111122344444445567777776554321111
Q ss_pred cceeeEEeecc-CCceEEEEEcCCCCEEEEecCCCeEEEE--ECCCC---ceeeeecC---------CCCCCCCcccCcc
Q 014114 151 CSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVW--DLDKC---EKIWTAKP---------PPKNSLGIFTPTW 215 (430)
Q Consensus 151 ~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~iw--d~~~~---~~~~~~~~---------~~~~~~~~~~~~~ 215 (430)
. ....+.+.. +-.|.|+....+|+.+++ +.||.|+-. ....+ +....+.. +.-....-.+..+
T Consensus 167 ~-f~~~~~i~~dg~~V~~I~~t~nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 167 I-FNTSFKISVDGVSVNCITYTENGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred c-cccceeeecCCceEEEEEeccCCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 0 111133333 456889987778877774 555543322 11111 10000000 0000000112357
Q ss_pred eeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
|..++. +...+.+.+-+..++|.+||+..
T Consensus 245 I~qi~I--D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITI--DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEe--ccccceeeeeccCceEEEEEccC
Confidence 888888 66677888889999999999976
No 447
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.14 E-value=5.5 Score=36.08 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=57.3
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE---EeEE---eccccCcEEEEEEcCC----CCEEEEEeCC-------
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCF---IGKCSGSIRSIARHPT----LPIIASCGLD------- 322 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~---~~~~~~~v~~i~~s~~----~~~l~s~~~d------- 322 (430)
..++|+|.|+|+++++ ...|.|++++ ..+.. +..+ ..........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999977665 4699999999 44443 2222 1222567899999995 3333333321
Q ss_pred -CeEEEEeCCCC-------ceeeEEeecc--ccceeEEEeeecCCcce-eeecCCCc
Q 014114 323 -SYLRFWDIKTR-------QLLSAVFLKQ--HLNEVVFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 323 -~~v~iwd~~~~-------~~~~~~~~~~--~~~~~i~~~~~s~~g~~-~~~~~d~~ 368 (430)
..|.-|....+ +.+... +.. ........+.|.|||.+ ++.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~-~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTG-LPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEE-EES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEE-eCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444444333 111111 111 11122366899999988 66665544
No 448
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=91.89 E-value=19 Score=38.08 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=47.7
Q ss_pred cccCCCCCCCc---------ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCC
Q 014114 5 TTLECPGCPPL---------RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNG 75 (430)
Q Consensus 5 ~~~~~~~~p~~---------~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg 75 (430)
..++||.|.-. ..++.+.||.+.|=|.+- +..........+++.+........-|||..-.||
T Consensus 348 R~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy--------IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 348 RDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY--------IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred ccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh--------eeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 45788888751 245677889888877654 3333333444556666653333344788888999
Q ss_pred eEEEeccCCCc
Q 014114 76 LTDILNPLNGD 86 (430)
Q Consensus 76 ~i~iwd~~~~~ 86 (430)
++.|=|..+.+
T Consensus 420 tlyvSdp~s~q 430 (1899)
T KOG4659|consen 420 TLYVSDPLSKQ 430 (1899)
T ss_pred eEEecCCCcce
Confidence 99998875544
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.41 E-value=11 Score=34.15 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=90.5
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCc------EEEEECCCCC---cceE-----EeeecCC--------CeEEEEeeCCCC
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQ------VRLYDTSAQR---RPVM-----SFDFRET--------PIKAVAEEPDSF 271 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~------i~~wd~~~~~---~~~~-----~~~~~~~--------~i~~~~~s~~~~ 271 (430)
+.+..+.+ .+++..+++.+.+|. ++.+++.... ..+. .+....+ -.-+|++.+++.
T Consensus 20 GGlSgl~~--~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDY--DPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred CcEeeEEE--eCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 45778888 545556666677777 6666655311 0011 1111111 334788877887
Q ss_pred EEEEEcCC------CCEEEEEccCCeEEeEEe--c------------cccCcEEEEEEcCCCCEEEEEeCC-----C--e
Q 014114 272 NIYIGNGS------GDLASVDIRTGKLLGCFI--G------------KCSGSIRSIARHPTLPIIASCGLD-----S--Y 324 (430)
Q Consensus 272 ~l~~~~~d------g~v~iwd~~~~~~~~~~~--~------------~~~~~v~~i~~s~~~~~l~s~~~d-----~--~ 324 (430)
++++.-.+ ..|..++.. |+.+..+. . ......-+|+++|+|+.|+++.+. + .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77776666 678888875 66544431 0 125678899999999976665432 2 1
Q ss_pred -------EEEE--eCCC-CceeeEEeeccc------cceeEEEeeecCCcceeee------cCCCcEEEecCCC
Q 014114 325 -------LRFW--DIKT-RQLLSAVFLKQH------LNEVVFDSAFADKEVANAA------ADAPMLEIQNGND 376 (430)
Q Consensus 325 -------v~iw--d~~~-~~~~~~~~~~~~------~~~~i~~~~~s~~g~~~~~------~~d~~v~vw~~~~ 376 (430)
++|+ |..+ ++....+.+.-. ....+..+.+-+++++++- .....++||....
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 4454 5444 333333222211 2334688888899887331 1344566666543
No 450
>PHA03098 kelch-like protein; Provisional
Probab=91.15 E-value=6.3 Score=38.49 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=69.3
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC------CcEEE
Q 014114 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~~ 241 (430)
++..++.||.+ ..+..||..+.+= ........ +..-.+++. -++.+++.|+.+ ..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~lp~------~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIF------PRYNPCVVN---VNNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce--eeCCCcCc------CCccceEEE---ECCEEEEECCcCCCCcccceEEE
Confidence 56677777765 3477788765432 21111000 011112222 256777777732 35788
Q ss_pred EECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCC--------CEEEEEccCCeEE--eEEeccccCcEEEEEEc
Q 014114 242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------DLASVDIRTGKLL--GCFIGKCSGSIRSIARH 310 (430)
Q Consensus 242 wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------~v~iwd~~~~~~~--~~~~~~~~~~v~~i~~s 310 (430)
||+.+.+= .+..+....... +++ ..++..++.|+.+. .+.+||..+.+-. ..+... ......+.+
T Consensus 411 yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~- 486 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF- 486 (534)
T ss_pred EeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE-
Confidence 88876321 011111111111 222 23556667776432 3888998765432 111111 111122223
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCc
Q 014114 311 PTLPIIASCGLD-----SYLRFWDIKTRQ 334 (430)
Q Consensus 311 ~~~~~l~s~~~d-----~~v~iwd~~~~~ 334 (430)
++.+++.|+.+ ..|.+||..+.+
T Consensus 487 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 -NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred -CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 66677777654 467778776654
No 451
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.02 E-value=12 Score=34.19 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=104.0
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCE--EEEEe-CC---CcEEEEEC
Q 014114 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK--FVAGT-ND---HQVRLYDT 244 (430)
Q Consensus 171 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~-~d---g~i~~wd~ 244 (430)
+|...+++.....+-+.+||+. |+.+..+........ +-...+.+ .++. |+.++ .+ ..|++|.+
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-----Dvrygf~l----~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-----DVRYGFPL----NGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-----EEEEEEEE----TTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred CcccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-----eeecceec----CCceEEEEEEecCcCCCCeEEEEEe
Confidence 3455677777788889999995 555555543211000 11222222 3332 34443 32 46899977
Q ss_pred CCCCcceEEeee-------cCCCeEEEEe--eC-CCC-EEEEEcCCCCEEEEEcc---CC----eEEeEEeccccCcEEE
Q 014114 245 SAQRRPVMSFDF-------RETPIKAVAE--EP-DSF-NIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIRS 306 (430)
Q Consensus 245 ~~~~~~~~~~~~-------~~~~i~~~~~--s~-~~~-~l~~~~~dg~v~iwd~~---~~----~~~~~~~~~~~~~v~~ 306 (430)
......+..+.. ....++.+|+ +| +|. ++++...+|.+..|-+. .+ +.+++|.. .+.+-.
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EG 212 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEG 212 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceE
Confidence 632222333321 1134677776 33 344 55667788988887764 23 46777876 468999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC-----CceeeEEeecc-ccceeEEEeee--cCCcc--e-eeecCCCcEEEecCC
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIKT-----RQLLSAVFLKQ-HLNEVVFDSAF--ADKEV--A-NAAADAPMLEIQNGN 375 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~~~-~~~~~i~~~~~--s~~g~--~-~~~~~d~~v~vw~~~ 375 (430)
+.......+|+.+-+|.-|.-|+.+. ++.+.. ..+ +...-+-.++. ..+|. + ++.-.+++..||++.
T Consensus 213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~--~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS--ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE--BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEEecccCCEEEecCccEEEEEecCCCCCCcceeeec--ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 99988888999999987777777652 222222 112 22222344444 34443 3 555567789999987
Q ss_pred CC
Q 014114 376 DT 377 (430)
Q Consensus 376 ~~ 377 (430)
..
T Consensus 291 ~~ 292 (381)
T PF02333_consen 291 GP 292 (381)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 452
>PRK13684 Ycf48-like protein; Provisional
Probab=90.87 E-value=12 Score=33.89 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=81.3
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
.+.+..+.+.|++.+++++. .|.+..- ...+...+ ...... ...++++.+ .+++..++++ ..|.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~--------~~~l~~i~~--~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNS--------SRRLQSMGF--QPDGNLWMLA-RGGQIR 238 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCC--------cccceeeeE--cCCCCEEEEe-cCCEEE
Confidence 35678889999887766554 4544432 12222212 121111 145788888 6777766654 567665
Q ss_pred EEECCCCCcceEEeee----cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec--cccCcEEEEEEcCCCC
Q 014114 241 LYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLP 314 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~v~~i~~s~~~~ 314 (430)
+=....+.. -..... ....+..+.+.|++..+++| .+|.|. .....++.-..... ......+.+.|..+++
T Consensus 239 ~~s~d~G~s-W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 239 FNDPDDLES-WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred EccCCCCCc-cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 322333221 111111 12357888999887755554 667554 34444444333321 1134678888877766
Q ss_pred EEEEEeCCCeEEEEe
Q 014114 315 IIASCGLDSYLRFWD 329 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd 329 (430)
.++ .+..|.|.-|+
T Consensus 316 ~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 GFV-LGQRGVLLRYV 329 (334)
T ss_pred eEE-ECCCceEEEec
Confidence 655 44678777765
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.48 E-value=1.7 Score=25.00 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=28.1
Q ss_pred CCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccccCcEEEEEE
Q 014114 268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 268 ~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence 5677676655 5788999999999888877652 33344544
No 454
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.30 E-value=23 Score=36.21 Aligned_cols=221 Identities=10% Similarity=0.056 Sum_probs=117.5
Q ss_pred cceEeecCCCcEEEEEecCcc-C-Ccc-hhheecCCCCcceEEEEeccCCCCCCceEEEEccC---CeEEEeccCC--C-
Q 014114 15 LRALTFDSLGLIKVIEARGED-G-GVP-KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKN---GLTDILNPLN--G- 85 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g~i~iwd~~~--~- 85 (430)
.-+++-...|.+++|=..... . ... .....++.-..-++..++++ ..+|+.+++++.+ +.|++|.+.- +
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~--~~~g~~ili~t~s~~s~~l~~yrv~I~W~~ 140 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAP--SDNGKSILIATYSSLSKQLRFYRVQIDWNA 140 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeee--cCCCCEEEEEEccccCCceEEEEEEEeccC
Confidence 457888888999999774211 0 011 11222333344445556665 5566656555544 7888876431 1
Q ss_pred -------ceeeeeee-cC-CC---C--CC--------CCCCceEEEEeeccCccccccCCceEEEEcc----CCeeEEEE
Q 014114 86 -------DLRVAISN-AG-DS---G--AQ--------PEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRS 139 (430)
Q Consensus 86 -------~~~~~~~~-~~-~~---~--~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~g~i~v~~ 139 (430)
+....+.. |. .. . .. ..-..+..+.+.+..... .+....+++... ...|.-|.
T Consensus 141 ~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~-~~~p~Ili~~~~~~~~~SiI~Rwe 219 (753)
T PF11635_consen 141 KPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDK-DSAPEILIVYSSPNTPSSIIERWE 219 (753)
T ss_pred cCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCC-CCCCeEEEEEEcCCCCCcEEEEEE
Confidence 11111221 10 00 0 00 022356677777632211 113334444432 34688998
Q ss_pred eeeeccc-------------ccCCcceeeEEee----ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-c
Q 014114 140 IEVTKVS-------------AESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-K 201 (430)
Q Consensus 140 ~~~~~~~-------------~~~~~~~i~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~ 201 (430)
+...... ..........|.. ...+.|.++....-+.+++....||+|.++|..+.+.+... .
T Consensus 220 L~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~ 299 (753)
T PF11635_consen 220 LREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRT 299 (753)
T ss_pred EEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccccc
Confidence 8765431 0111122222322 23466888888778889999999999999999887666544 0
Q ss_pred --CCCCCCCCcc-------cCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 202 --PPPKNSLGIF-------TPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 202 --~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
........+. ....+..++| +|.+..++.-..+|.+.
T Consensus 300 ~~~~~~~v~s~~~~Gf~fp~~~~~~~vaf--SPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 300 NGEPPNTVTSLFQAGFHFPCIQPPLHVAF--SPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccCCccccccccccccccccCCCCceEEE--CcccceEEEEecCCCce
Confidence 1111011110 0113345678 89998888888888866
No 455
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.11 E-value=13 Score=32.88 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=65.7
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC----C----------------C
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL----D----------------S 323 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~----d----------------~ 323 (430)
..|+ +|++.++-+..|.|.-+|..+|+......- .+....++|. |.+++++.. + .
T Consensus 208 PRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v--pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C 282 (335)
T TIGR03032 208 PRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL--PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC 282 (335)
T ss_pred CcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC--CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence 3443 677788888889999999987865433332 4567888886 777766532 1 2
Q ss_pred eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
-|.+.|+++|..++.+.+.+...+ +++++.-|.=+.
T Consensus 283 Gv~vidl~tG~vv~~l~feg~v~E-ifdV~vLPg~r~ 318 (335)
T TIGR03032 283 GVAVIDLNSGDVVHWLRFEGVIEE-IYDVAVLPGVRR 318 (335)
T ss_pred cEEEEECCCCCEEEEEEeCCceeE-EEEEEEecCCCC
Confidence 377889999999999888877655 589998887665
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.82 E-value=2.3 Score=41.67 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred CcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeEEe
Q 014114 302 GSIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 302 ~~v~~i~~s~----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 340 (430)
..+..+++++ +..+|++.+.|+.+|+||+.+++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3456666666 66899999999999999999999977653
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.75 E-value=17 Score=33.80 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEE
Q 014114 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd 243 (430)
...+..++++.+++.+.....++-||- ++..+. +.... ...+..+.| .+++..++++ ..|.+.. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~--------~~~l~~v~~--~~dg~l~l~g-~~G~l~~-S 306 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRAS--------ARRIQNMGW--RADGGLWLLT-RGGGLYV-S 306 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCC--------ccceeeeeE--cCCCCEEEEe-CCceEEE-e
Confidence 344556677777776655443333442 222111 11111 145788888 6777777665 5666543 3
Q ss_pred CCCCCc----ceEEeee--cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe--ccccCcEEEEEEcCCCCE
Q 014114 244 TSAQRR----PVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 244 ~~~~~~----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~i~~s~~~~~ 315 (430)
...++. ....... ....+..+.|.+++..+++| ..|.+.... ..++.-.... ..-....+.+.|.++++.
T Consensus 307 ~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 307 KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 322221 1222221 12358899998887666555 777665543 3444433322 111456889999877765
Q ss_pred EEEEeCCCeEEEE
Q 014114 316 IASCGLDSYLRFW 328 (430)
Q Consensus 316 l~s~~~d~~v~iw 328 (430)
+++| .+|.|.-|
T Consensus 385 ~~~G-~~G~il~~ 396 (398)
T PLN00033 385 FVLG-NDGVLLRY 396 (398)
T ss_pred EEEe-CCcEEEEe
Confidence 6555 57776554
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.71 E-value=0.053 Score=49.55 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=90.4
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCE-EEEEeCCCcEEEEEC
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDT 244 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~wd~ 244 (430)
....|-|.+.-++.++.+..|..||-. ++.+..+... .....++| +.++.. ++.+-..+.+.+||+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~t----------g~aldm~w--DkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPT----------GKALDMAW--DKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCc----------hhHhhhhh--ccccchhhhhhhcCCCeeechh
Confidence 344566767668888888888888853 3333333221 33455666 445544 444567889999999
Q ss_pred CCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
.+.......+.+ ...-.-+.|++....++.+...|.+.|++..+.+.+...-.| ...++++++.+.+..+
T Consensus 105 n~eytqqLE~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 105 NSEYTQQLESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLEDYVI 174 (615)
T ss_pred hhhhHHHHhccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccceee
Confidence 874321222222 222233789999999999999999999999887766555545 8899999999877433
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=89.66 E-value=16 Score=35.14 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=66.9
Q ss_pred CCCEEEEecCC--CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC---cEEEEECCCC
Q 014114 173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ 247 (430)
Q Consensus 173 ~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~ 247 (430)
++...+.|+.+ ..+..||..+++ +.....-... ......+.+ ++...+.|+.++ .+..||..+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~--W~~~~~l~~~-----r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA--WVNMPSLLKP-----RCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe--EEECCCCCCC-----CcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCC
Confidence 56677777754 357778875542 2111110000 011222333 677778877654 4677887753
Q ss_pred Cc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE--eEEeccccCcEEEEEEcCCCCEEEEEeCC--
Q 014114 248 RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLD-- 322 (430)
Q Consensus 248 ~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-- 322 (430)
.= .+..+....... +++ .-++...+.| |.+.+||..+.+-. ..+... ......+.+ ++++.+.||.+
T Consensus 387 ~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~--~~~IYviGG~~~~ 458 (480)
T PHA02790 387 QWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNPELIIV--DNKLLLIGGFYRG 458 (480)
T ss_pred EEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC-ccccEEEEE--CCEEEEECCcCCC
Confidence 20 000011111111 222 2355566666 35788998765432 222211 122222333 66777777754
Q ss_pred ---CeEEEEeCCCC
Q 014114 323 ---SYLRFWDIKTR 333 (430)
Q Consensus 323 ---~~v~iwd~~~~ 333 (430)
..|..||..+.
T Consensus 459 ~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 459 SYIDTIEVYNNRTY 472 (480)
T ss_pred cccceEEEEECCCC
Confidence 23555555443
No 460
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.61 E-value=27 Score=35.82 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=49.5
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE----ecc--------------ccCcEEEEEEcCCCCEEEEEe
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGK--------------CSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~--------------~~~~v~~i~~s~~~~~l~s~~ 320 (430)
..|.++....-+..++....||+|.++|..+.+.+... ... +...+-.++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777677788999999999999998877554433 100 112344588999998888888
Q ss_pred CCCeEE
Q 014114 321 LDSYLR 326 (430)
Q Consensus 321 ~d~~v~ 326 (430)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888855
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.52 E-value=2.1 Score=41.95 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=44.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---CCcceEEee--e--------------------cCCCeEEEEeeC----CCCEEEE
Q 014114 225 DDHRKFVAGTNDHQVRLYDTSA---QRRPVMSFD--F--------------------RETPIKAVAEEP----DSFNIYI 275 (430)
Q Consensus 225 ~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~--~--------------------~~~~i~~~~~s~----~~~~l~~ 275 (430)
++...++++..||.+....... ......... . .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667788888999988887664 111011100 0 113455566666 6679999
Q ss_pred EcCCCCEEEEEccCCeEEeEE
Q 014114 276 GNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 276 ~~~dg~v~iwd~~~~~~~~~~ 296 (430)
-+.|+.+|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996665
No 462
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.30 E-value=2.3 Score=24.44 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=24.1
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCCCceeeEEee
Q 014114 311 PTLPIIASCG-LDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 311 ~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~ 341 (430)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 678999999999998888654
No 463
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.23 E-value=18 Score=33.36 Aligned_cols=195 Identities=12% Similarity=0.106 Sum_probs=103.8
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC---ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG---TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
++.++.+..+|.+.-.+.+... .+|...... .+.+-.+..+|+ |+.++.++.++.+|..+++.++.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~----------~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~ 136 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGL----------VKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWS 136 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCc----------EEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEE
Confidence 3466666777755555544321 235433221 111112222554 77789999999999999999998
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC---CCeEEEEeeCCCCEEEEE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~ 276 (430)
..... . . ........ ....+..++.++.+.-.|..++.. ........ ..+..-....++ .++.+
T Consensus 137 ~~~~~-~-~-----~~~~~~v~----~~~~v~~~s~~g~~~al~~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~-~vy~~ 203 (370)
T COG1520 137 RNVGG-S-P-----YYASPPVV----GDGTVYVGTDDGHLYALNADTGTL-KWTYETPAPLSLSIYGSPAIASG-TVYVG 203 (370)
T ss_pred EecCC-C-e-----EEecCcEE----cCcEEEEecCCCeEEEEEccCCcE-EEEEecCCccccccccCceeecc-eEEEe
Confidence 87654 0 0 11222222 223444444678888888777653 33322211 011110001223 45555
Q ss_pred cC--CCCEEEEEccCCeEEeEEeccccCcEEE---EEEcCC-----CCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 277 NG--SGDLASVDIRTGKLLGCFIGKCSGSIRS---IARHPT-----LPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 277 ~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~---i~~s~~-----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
.. ++.+.-.|..+|......+.++.-.-.. ...... +.-+..++.++.+...|..+++.+.....
T Consensus 204 ~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 204 SDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 55 5667777888888776643221111110 111111 12345667788899999999999988543
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.00 E-value=19 Score=34.04 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--EEeEEe----ccccCcEEEEEEcCCC
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFI----GKCSGSIRSIARHPTL 313 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~----~~~~~~v~~i~~s~~~ 313 (430)
...+.|+|.|++++|++--..|.|++++..++. .+..+. .........|+|+|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 456889999999877766446999999865543 222121 1115778999999885
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=9 Score=35.41 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=67.0
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc---ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~ 288 (430)
..+.|.++.| ++|.+.+|+--.+.+|.+++....+. .....+..+..|....|+.+ .-+|.-...| +.+|-..
T Consensus 65 d~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 3467999999 89999999999999999999843221 12223334556889999765 4566655544 6677554
Q ss_pred CC-eEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 289 TG-KLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 289 ~~-~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
.. +.++..+.+ ...|+-..|.++-+.+
T Consensus 141 pekrslRlVks~-~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 141 PEKRSLRLVKSH-NLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhhhhhc-ccCccEEEEccccceE
Confidence 32 234444454 6677777788877653
No 466
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.64 E-value=11 Score=35.38 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=85.8
Q ss_pred CCCCCEEE-EEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCC-------EEEEEcCCCCEEEEEccC-CeEEe
Q 014114 224 IDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-------NIYIGNGSGDLASVDIRT-GKLLG 294 (430)
Q Consensus 224 ~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~l~~~~~dg~v~iwd~~~-~~~~~ 294 (430)
..+.++|+ .|+....++-.|+..++ .+..+..|..- -+.|.|... .-++|-.+..|.-.|.+. |..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 34444444 34455567777777765 47777776543 566777431 224455566666667653 22222
Q ss_pred EEeccccCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEE
Q 014114 295 CFIGKCSGSIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~s~----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~ 370 (430)
.... ...++.-.|+. ..-+++.++.-|.|++||-- |..-.+. +++- +..|..+..+.+|.++.+.....|.
T Consensus 553 v~es--KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKta-lP~l-G~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 553 VVES--KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTA-LPGL-GDAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred eeee--hhccccccccccccccCceEEEecCCCceeeehhh-cchhhhc-Cccc-ccceeeeEeecCCcEEEEeecceEE
Confidence 1111 22233333332 34589999999999999943 4333332 4443 4457888999999996666677888
Q ss_pred EecCCC
Q 014114 371 IQNGND 376 (430)
Q Consensus 371 vw~~~~ 376 (430)
+-+...
T Consensus 628 L~d~~i 633 (776)
T COG5167 628 LTDVPI 633 (776)
T ss_pred EEeccc
Confidence 877765
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.03 E-value=9.8 Score=28.83 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=69.1
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCC-------cceEEeeecCCCeEEEEeeC-----CCCEEEEEcCCCCEEEEEccCCe
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP-----DSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~~ 291 (430)
+.....|++++.-|+|.|++..... ..+..+.. ...|++|+-.+ ....|+.|+ ...+..||+....
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 4455578888899999999876422 12344443 45777776543 235677775 4568999998766
Q ss_pred EEeEEeccccCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 292 LLGCFIGKCSGSIRSIARHP---TLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~s~---~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
-++.-.- ...|+++.+-. ...-|+..+.+..|.-||..-.+...+
T Consensus 85 d~Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 85 DLFYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhhhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 5543333 46778877733 122344445577788888765555444
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=16 Score=38.52 Aligned_cols=140 Identities=9% Similarity=0.180 Sum_probs=79.2
Q ss_pred cCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee------CCCCCEEEEEeCCCcEEEEECC----CCCcc
Q 014114 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDDHRKFVAGTNDHQVRLYDTS----AQRRP 250 (430)
Q Consensus 181 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~l~~~~~dg~i~~wd~~----~~~~~ 250 (430)
+.|+.+.+|+.+++.....+.+... .|..+.... .|.=+++++.+.--.|.++-+. ++...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~sh---------tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSH---------TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhh---------hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 4677899999988665555544331 122222210 1111223333333345554332 21110
Q ss_pred e----EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc----CC---e-E----------------EeEEeccccC
Q 014114 251 V----MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR----TG---K-L----------------LGCFIGKCSG 302 (430)
Q Consensus 251 ~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~----~~---~-~----------------~~~~~~~~~~ 302 (430)
+ ..+......|.++....+|+.+++| .||. +|.+. .+ + + +..+.+.+..
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 0 1222234578899988889887776 5554 44332 11 1 1 1122322367
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+|..|.....-..+.+-+..++|.+||+..
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccC
Confidence 999999988888999999999999999976
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.83 E-value=26 Score=32.35 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=86.8
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
..++.+..+|.|.-+|..++..++...... . ...+..-.+. .+|+ ++.++.++.++.+|.++++. +...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~--~-----~~~~~~~~~~--~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~ 137 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLG--A-----VAQLSGPILG--SDGK-IYVGSWDGKLYALDASTGTL-VWSR 137 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcC--c-----ceeccCceEE--eCCe-EEEecccceEEEEECCCCcE-EEEE
Confidence 345556888899999999998877654432 0 0112222231 2454 77788899999999987664 5555
Q ss_pred eecC-CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc--cCcEEEEEEcCCCCEEEEEeC--CCeEEEEe
Q 014114 255 DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGL--DSYLRFWD 329 (430)
Q Consensus 255 ~~~~-~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~s~~~--d~~v~iwd 329 (430)
.... ..+..-.+-.++ .++.++.++.+...|..+++.+..+.... ...+..-....++ .++.+.. ++.+.-.|
T Consensus 138 ~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 138 NVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALN 215 (370)
T ss_pred ecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEE
Confidence 5544 111111222233 45555578899999988888876654420 1111111111233 3444444 55677778
Q ss_pred CCCCceeeE
Q 014114 330 IKTRQLLSA 338 (430)
Q Consensus 330 ~~~~~~~~~ 338 (430)
..+|+....
T Consensus 216 ~~~G~~~w~ 224 (370)
T COG1520 216 AEDGTLKWS 224 (370)
T ss_pred ccCCcEeee
Confidence 877877766
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.80 E-value=19 Score=30.80 Aligned_cols=126 Identities=14% Similarity=0.224 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCEEEEecCC---CeEEEEECCC--CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCc-
Q 014114 165 IAFSKVDISEKFSLFGGKG---VEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ- 238 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~- 238 (430)
..+-.+-++|++|.+|+.. ..+++++... ..+.+.-... .+...-|-....- -+||+.|+.|+....
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~-----~m~~~RWYpT~~~--L~DG~vlIvGG~~~~t 141 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN-----DMQSGRWYPTATT--LPDGRVLIVGGSNNPT 141 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc-----cccCCCccccceE--CCCCCEEEEeCcCCCc
Confidence 3344567899999988752 3477777643 1111111110 0112234444444 479999999887753
Q ss_pred EEEEECCCC-CcceEE--eee-----cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc
Q 014114 239 VRLYDTSAQ-RRPVMS--FDF-----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 239 i~~wd~~~~-~~~~~~--~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
..+|..... ...... +.. ....--.+-..|+|++|+.+..+. .|||..+.+.+..+..-
T Consensus 142 ~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 142 YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 445544221 111111 110 011122455679999999887654 67798888777776653
No 471
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.12 E-value=2.3 Score=22.91 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeee
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~ 200 (430)
..++.++.+|.+..+|..+|+.++..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36777889999999999999988764
No 472
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.01 E-value=34 Score=32.92 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=57.3
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc---EEEEEEcCCCCEEEEEe--------------CCCeEE
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHPTLPIIASCG--------------LDSYLR 326 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---v~~i~~s~~~~~l~s~~--------------~d~~v~ 326 (430)
+...++|.+++... ..+..+|+ .|+.+..+... ... =..+..-|+|++|+.+. .| .|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~-~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Iv 227 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLP-GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIV 227 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE---TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecC-CcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEE
Confidence 56678898777655 77888998 57766555432 111 24567789999988777 23 366
Q ss_pred EEeCCCCceeeEEeeccccc------------------------eeEEEeeecC-Ccce-eeecCCCcEEEecCC
Q 014114 327 FWDIKTRQLLSAVFLKQHLN------------------------EVVFDSAFAD-KEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~~------------------------~~i~~~~~s~-~g~~-~~~~~d~~v~vw~~~ 375 (430)
.+| .+|+.+..+.+..|.+ ..+.++.+.+ ++.+ +++-.-..|...+..
T Consensus 228 evd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 228 EVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp EE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-T
T ss_pred EEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECC
Confidence 667 7787777654433321 1267888888 6666 555545566666633
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=86.01 E-value=34 Score=32.92 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=69.6
Q ss_pred CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC-CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 258 ~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
...|+.+++..+ ..+..|+...-+..|+..+ +..+....+...++|..|.=.|+++ |..|+.+|.++. +.+.++..
T Consensus 375 g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~ 451 (671)
T COG3292 375 GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVL 451 (671)
T ss_pred ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchh
Confidence 356777777664 4666677665567777766 4444445554467899998889988 788888886553 33444433
Q ss_pred eEEeeccc--cceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 337 SAVFLKQH--LNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 337 ~~~~~~~~--~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
..+.+..+ ..+.+..+.+.|+|++ +..+ +| |..|+..
T Consensus 452 n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq 491 (671)
T COG3292 452 NLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQ 491 (671)
T ss_pred cccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccc
Confidence 33222222 2334678889999999 4333 22 3555543
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.98 E-value=19 Score=29.93 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=61.2
Q ss_pred CEEEEecCCCeEEEEECC--CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC------cEEEE---E
Q 014114 175 KFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRLY---D 243 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~i~~w---d 243 (430)
..|+.+...+.|.+|++. ..+.+..+..- +.|..+.+ +..|++|++--.+. .+++| .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv----------~~V~~l~y--~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV----------GRVLQLVY--SEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch----------hheeEEEe--ccccceEEEEEeecCCccceEEEEEEEhh
Confidence 455555677789999998 34455555543 66889999 78899999864332 44554 2
Q ss_pred CC-CCCcceE-Eeeec---------------------CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 244 TS-AQRRPVM-SFDFR---------------------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 244 ~~-~~~~~~~-~~~~~---------------------~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
.. ....++. .+-+| ..++.+++-.|-..-|++|+ ++.+.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22 1112222 12221 23566677666554566664 456888887543
No 475
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.92 E-value=2.6 Score=23.85 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=24.3
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 176 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
.++.++.+|.|+..|..+|+.++.++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566799999999999999999998764
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.73 E-value=2 Score=41.94 Aligned_cols=109 Identities=6% Similarity=-0.009 Sum_probs=62.4
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
..++++.-+|.++.++.+..||.|.+|+....+....... ..+-..+.|...| |+++..|+.+.-|. +.|...+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqq 89 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--AKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQ 89 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh--cCCccceeeeccc--eEEEeccchhheee-ccCcchhh
Confidence 4567788889999999999999999999865443221211 3344556665554 66777788888886 44544444
Q ss_pred EeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 339 VFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 339 ~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
+...........++...|..+-+.|.--|-|.-+
T Consensus 90 fdyndqsekefss~~cdptaqnvvgtlcggv~q~ 123 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQF 123 (1636)
T ss_pred ccccchhhhhccceecCchhhhhhhhhccceeee
Confidence 3232222222233344444333333333333333
No 477
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=29 Score=36.72 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=43.3
Q ss_pred ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 256 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
.+..++.+..+.... -++.+..-+.+-+|+.........+... ...+++++..++++..||.+.+||...++.
T Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPT-KILIGFNRGLVVIKDRASKYVQSAYLPN------GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccceeeeecCC-Ccceeeeeeeeeehhcccccchhhcccc------cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 344555555543333 2333445566666765444333333322 111177888999999999999999988755
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.50 E-value=7.8 Score=35.78 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-eeecCC-CCCCCCcccCccee-EeEEeeCCCCCEEEEEeCCCcE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPP-PKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i 239 (430)
..+..+-..|+++.++.-+. .++.++++.+.... .++-.. .++.. ..|+ .+.. -..+..++++..||.|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----~~Vte~l~l--L~Gg~SLLv~~~dG~v 292 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----HQVTEQLYL--LSGGFSLLVVHEDGLV 292 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----HHHHHHHHH--HhCceeEEEEcCCCce
Confidence 45667788999998887655 57888888654321 111111 11000 1122 1111 1245667888899988
Q ss_pred EEE-ECCCCCcc----eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC
Q 014114 240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 240 ~~w-d~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 314 (430)
.-| |.+....+ ++.++....++..+.-..+-+-+++-+..|++.++.....+.+-.-.. -..+.-+++||.+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~ 370 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence 876 55543322 222222233444443333345677777888888776544333322122 23567789999998
Q ss_pred EEEEEeCCCeEEEEeCCCCce
Q 014114 315 IIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd~~~~~~ 335 (430)
+|++-. .|.++++.+++..+
T Consensus 371 ~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred hheeec-CCceEEEEecCCCC
Confidence 887764 45688888776544
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.18 E-value=25 Score=30.72 Aligned_cols=269 Identities=11% Similarity=0.026 Sum_probs=130.8
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecC
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
.+..++.+.-++|.|+.+. .-|.++..+.. .+-..++.+ .|++..++..|.-+-+.|+.+.+.....-...
T Consensus 98 yvyvad~ssGL~IvDIS~P--~sP~~~~~lnt-~gyaygv~v------sGn~aYVadlddgfLivdvsdpssP~lagrya 168 (370)
T COG5276 98 YVYVADWSSGLRIVDISTP--DSPTLIGFLNT-DGYAYGVYV------SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA 168 (370)
T ss_pred EEEEEcCCCceEEEeccCC--CCcceeccccC-CceEEEEEe------cCCEEEEeeccCcEEEEECCCCCCceeeeeec
Confidence 3455666777999999873 11222222221 122223333 35688888756666788886543211111100
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 175 (430)
. +..+. ..+.+ .+++-..+..++-+.+-|+..... ++.+-....+..+.++..+++..
T Consensus 169 ~----~~~d~-~~v~I----------SGn~AYvA~~d~GL~ivDVSnp~s-------Pvli~~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 169 L----PGGDT-HDVAI----------SGNYAYVAWRDGGLTIVDVSNPHS-------PVLIGSYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred c----CCCCc-eeEEE----------ecCeEEEEEeCCCeEEEEccCCCC-------CeEEEEEecCCceEEEEecCCee
Confidence 0 11110 11111 223555556777888888765432 22222223345778888877665
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe-
Q 014114 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF- 254 (430)
Q Consensus 176 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~- 254 (430)
+++.... -+.+-|.......+.+..-+.. .+..++.+. -.+++......+.-+.+-|..++..+...-
T Consensus 227 y~vvy~e--gvlivd~s~~ssp~~~gsyet~-----~p~~~s~v~----Vs~~~~Yvadga~gl~~idisnp~spfl~ss 295 (370)
T COG5276 227 YLVVYDE--GVLIVDVSGPSSPTVFGSYETS-----NPVSISTVP----VSGEYAYVADGAKGLPIIDISNPPSPFLSSS 295 (370)
T ss_pred EEEEccc--ceEEEecCCCCCceEeeccccC-----Cccccccee----cccceeeeeccccCceeEeccCCCCCchhcc
Confidence 5554333 3667777665543333221110 012222222 246677777777777778877654433211
Q ss_pred -eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 255 -DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 255 -~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
.........+..+ +.++..+..+ ...+-+....+......+. ...+.+.+.+-+.+.+.+...++-+.||+.
T Consensus 296 ~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g~-~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 296 LDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPGR-PTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccCc-ceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1111122333332 3455555444 3444555433333222222 222333333334557777778888888875
No 480
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.79 E-value=40 Score=32.71 Aligned_cols=262 Identities=14% Similarity=0.173 Sum_probs=114.4
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC--CCceeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAI 91 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~--~~~~~~~~ 91 (430)
..+++-++++|.+..-.+..... .-.+..++.-......+++..++ +.+|+.|+.-|.=.++.+. .-+.+..+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g---~d~lf~gs~~gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNG---GDYLFVGSEFGDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT-----EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCC---CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence 46788899999999888875311 00122222211121233333322 4578888766654444443 33334444
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccc--cCCceEEEEc---cCCeeEEEEeeeecc--c--ccCCcceeeEEeeccC
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESS--SRSRTLLTCT---TKGKASMRSIEVTKV--S--AESSCSTVKSWNVCAS 162 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~---~~g~i~v~~~~~~~~--~--~~~~~~~i~~~~~~~~ 162 (430)
... .++..+.+.+....... .....+++++ .+|.+++..-..... . .....+.-.+|.+
T Consensus 297 ~N~---------~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l--- 364 (504)
T PF10433_consen 297 PNW---------GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTL--- 364 (504)
T ss_dssp -------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE---
T ss_pred cCc---------CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEe---
Confidence 332 47888887754331100 0001555553 466777765322221 0 0001113333433
Q ss_pred CceEEEEEcC-CCCEEEEecCCCeEEEEECC---CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCc
Q 014114 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 238 (430)
.... +..+|+.+..+. -+++.+. ..+.+..+... . +.. ....+.+..+ . +..++=.+.. .
T Consensus 365 ------~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~-~--f~~-~~~Tl~~~~~---~-~~~ivQVt~~-~ 428 (504)
T PF10433_consen 365 ------KLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEED-G--FDT-DEPTLAAGNV---G-DGRIVQVTPK-G 428 (504)
T ss_dssp -------SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE----T--S-S-SS-EEEEEEE---T-TTEEEEEESS-E
T ss_pred ------eecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhc-c--CCC-CCCCeEEEEc---C-CCeEEEEecC-e
Confidence 3222 245666555543 3444443 23333332111 0 000 0122333333 2 4445444443 4
Q ss_pred EEEEECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc----ccCcEEEEEEcC
Q 014114 239 VRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHP 311 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~i~~s~ 311 (430)
|++.+....+. ...... ....|.+.+.+ +.+++.+..++.+.++.+............ ....|.|+..+|
T Consensus 429 i~l~~~~~~~~-~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 429 IRLIDLEDGKL-TQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEEESSSTSE-EEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEECCCCeE-EEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 78888766443 433332 33456665554 347777777888999998877664333211 267788888766
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.54 E-value=33 Score=32.54 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=59.1
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-ceEEe----e-ecCCCeEEEEeeCCC------CEEEEEc----
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSF----D-FRETPIKAVAEEPDS------FNIYIGN---- 277 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~----~-~~~~~i~~~~~s~~~------~~l~~~~---- 277 (430)
.....++| .|++++|++--..|.|++++...... .+..+ . ........|+++|+- .+|++..
T Consensus 30 ~~Pw~maf--lPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLW--GPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEE--cCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 33678889 68887777654469999998654321 11111 1 135678999999874 3444432
Q ss_pred ------CCCCEEEEEccCC-------eEE-eEEeccccCcEEEEEEcCCCCEEEEEeCC
Q 014114 278 ------GSGDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 278 ------~dg~v~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
....|.-|.+... +.+ ..+.......-..|+|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444444311 111 11211101234567899999877766543
No 482
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=83.81 E-value=49 Score=33.81 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=59.1
Q ss_pred EccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCC
Q 014114 71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (430)
Q Consensus 71 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~ 150 (430)
-+.|..+.+|++.++...+.+.... ..|..++++.+....--+.-..++.....-.+.++.+......
T Consensus 98 iT~dnkLiLWnynn~neyq~idd~s--------htIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T---- 165 (1263)
T COG5308 98 ITNDNKLILWNYNNSNEYQEIDDFS--------HTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKT---- 165 (1263)
T ss_pred EEcCCEEEEEecCCCcchhhhhhhh--------hheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEecccc----
Confidence 3467899999998776655554422 2455566655444211111112222233345566655544321
Q ss_pred cceeeEEeec-----cCCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 014114 151 CSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 151 ~~~i~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 191 (430)
+.+.+++.. .+-.|.|+.-+.+|+.+++|-.| +.+|.+
T Consensus 166 -~Els~fnTgl~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 166 -GELSLFNTGLVVSVQGINVRCIVSEEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred -ceeEEEecceEEeccCceeEEEEeccCCcEEEecCCC--CCeEEE
Confidence 344555433 23457777777788888877777 667765
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.51 E-value=32 Score=30.61 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEEC
Q 014114 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~ 244 (430)
|.+|...++|.+|++.-.-..|.+.|..+++.++.+.+.....+.+ ....|....+-+++-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~------~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL------PATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc------cCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 5667777899999999888999999999999999998763332222 1222321334444444566777888876
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.09 E-value=10 Score=35.02 Aligned_cols=157 Identities=8% Similarity=0.035 Sum_probs=90.9
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-cCC----CeE-EEEeeCCCCEEEEEcCCCCEEEE-E
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RET----PIK-AVAEEPDSFNIYIGNGSGDLASV-D 286 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~----~i~-~~~~s~~~~~l~~~~~dg~v~iw-d 286 (430)
..+..+-. .|+++.++.-+. ..+.++++.+..-..+.+-. ..+ .|+ .+..-..|..+++++.||.|.-| |
T Consensus 221 ~~v~qllL--~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 221 SDVSQLLL--TPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred cchHhhEE--CCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 34555556 799998887665 67888888753211111111 011 122 11222346678888899988766 5
Q ss_pred ccCCe-----EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCccee
Q 014114 287 IRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 287 ~~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~ 361 (430)
.+.+. .++.++-. ..++..+.-..+.+-+++-...|++.++.....+.+-. .+ -.++ +.-+++||.+.++
T Consensus 298 vr~~~~p~l~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~-~~~~-~~~~~~Sp~~~~L 372 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ER-AYQA-PQLVAMSPNQAYL 372 (733)
T ss_pred eecCCCCcceeeeccccC-cccceeeccccccceEEEEcCCCceeeeecccCcceeh--hh-hhcC-cceeeeCcccchh
Confidence 55321 22222222 23444333333345677788888888887554444322 11 1122 3667999999998
Q ss_pred eecCCCcEEEecCCCCC
Q 014114 362 AAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 362 ~~~~d~~v~vw~~~~~~ 378 (430)
..-+.|.++++......
T Consensus 373 l~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 373 LSEDQGKIRLAQLENRN 389 (733)
T ss_pred eeecCCceEEEEecCCC
Confidence 88888999999876644
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.50 E-value=0.091 Score=48.10 Aligned_cols=140 Identities=11% Similarity=0.096 Sum_probs=92.6
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEE-EEcCCCCEEEEEccCCeEE-eEEecccc
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLL-GCFIGKCS 301 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~-~~~~~~~~ 301 (430)
.+.+..++.++.+-.+..||-.... ..... .......++|..++..++ .+-..+.+.+||+.+.... -.+.+.+.
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~--~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQV--ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcce--ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 5666668888889899999876422 22222 234556678877775544 4556788999999753221 12222212
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEE
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~v 371 (430)
... +.|++....++.+...|.+.|++..+.+.+.. ...|... ++++++.+.+..+.++.|..+.+
T Consensus 120 ~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RR-gtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 120 KSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRR-GTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred HHH--HhhccCCccccccccccceEEEeccchhhhhh--hcccccc-eeEEEecccceeeecCcHHHHHH
Confidence 222 68999888999998999999999877665544 3335444 58889999888877776665544
No 486
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.36 E-value=7.5 Score=21.88 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=18.9
Q ss_pred cCcEEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 014114 301 SGSIRSIARHPTLPIIASCG-LD--SYLRFW 328 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~-~d--~~v~iw 328 (430)
...-....|+|||+.|+-++ .+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45677889999998876555 44 555555
No 487
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.84 E-value=7.9 Score=21.79 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=19.3
Q ss_pred cCCCeEEEEeeCCCCEEEEEc-CC--CCEEEE
Q 014114 257 RETPIKAVAEEPDSFNIYIGN-GS--GDLASV 285 (430)
Q Consensus 257 ~~~~i~~~~~s~~~~~l~~~~-~d--g~v~iw 285 (430)
....-....|+|||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677889999998887665 34 555555
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.73 E-value=20 Score=31.41 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCce
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTRQL 335 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~------~d~~v~iwd~~~~~~ 335 (430)
...|++||..+.+-..--.+- .+.|++|.|..+.++++.|. ....+..||..+..-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI-SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc-eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 345999998765544333333 78899999987777777774 345788999876654
No 489
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.28 E-value=3.9 Score=21.92 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.1
Q ss_pred eEEEEccCCeEEEeccCCCceeeee
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
.+++++.+|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5888899999999999999877653
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.02 E-value=42 Score=29.63 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=121.4
Q ss_pred CCCCceEEEEccCCeEEEeccCC------C-ceeeeeeecCCCCCCCCCCceEEEEeeccCcc----ccccCCceEEEEc
Q 014114 62 SQNDPLLAVARKNGLTDILNPLN------G-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE----ESSSRSRTLLTCT 130 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~------~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~ 130 (430)
+|.+.+-++....+...+||... . .++..+.. +.. .......+.+.+.....- ...+....++.++
T Consensus 31 ~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~--~~~-~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 31 RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPA--PPP-LAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecC--CCC-CCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 77777888877889999999851 1 11222221 000 011123344443322110 0001234689999
Q ss_pred cCCeeEEEEeeeecccccCCcceeeEEeeccCCce-EEEEEcC--CCCEEEEe-cCCCeEEEEECCCCceee--eecCCC
Q 014114 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-AFSKVDI--SEKFSLFG-GKGVEVNVWDLDKCEKIW--TAKPPP 204 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i-~~~~~~~--~~~~l~~~-~~dg~v~iwd~~~~~~~~--~~~~~~ 204 (430)
++|+|.-|.....+.. ....+.+.+-...+.| ..+++.. .+.+|+.+ -..++|.+||-.-..... .+..+.
T Consensus 108 EdGTisaW~p~v~~t~---~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 108 EDGTLSGWAPALGTTR---MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred CCceEEeecCcCCccc---ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 9999999985433320 0011222332222333 3445443 35555544 457889998754322110 111110
Q ss_pred C----CCCCcccCcceeEeEEee-CCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--cCCCeEEEEeeC------CCC
Q 014114 205 K----NSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEP------DSF 271 (430)
Q Consensus 205 ~----~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~s~------~~~ 271 (430)
. ..+.+.....-.-+.|.. .++...=+.+..-|.|-+||+.. . .++.+.. .-..-+.|+..| .+.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-Q-LLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-c-EEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 001110000111112211 22333333444567899999875 3 3555532 223445566654 466
Q ss_pred EEEEEcCCCCEEEEEccCCeEEeEEeccc-----cCcEEEEEEcC
Q 014114 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHP 311 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~v~~i~~s~ 311 (430)
+|+--..||+|..||..+++.+..+.... ....+.|.|-.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77777789999999999999888776541 12456666654
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.13 E-value=48 Score=29.82 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCCcc--eEEeeecCCCe--EEEEeeCCCCEEEEEcCC-----CCEEEEEccCCe
Q 014114 226 DHRKFVAGTNDH-----QVRLYDTSAQRRP--VMSFDFRETPI--KAVAEEPDSFNIYIGNGS-----GDLASVDIRTGK 291 (430)
Q Consensus 226 ~~~~l~~~~~dg-----~i~~wd~~~~~~~--~~~~~~~~~~i--~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~ 291 (430)
++.+++.|+.++ .+..||+.+..-. ...+..-..+. .+++. -++.+.+.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 566777777543 5667777653310 01111101111 12222 245666666642 358888987654
Q ss_pred E--EeEEeccccCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCce
Q 014114 292 L--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRFWDIKTRQL 335 (430)
Q Consensus 292 ~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~----~v~iwd~~~~~~ 335 (430)
- +..+... ......+...++++.+.|+.++ .+.+||..+.+-
T Consensus 151 W~~~~~~p~~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 2 2222211 1111222233667777777664 356788876553
No 492
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.57 E-value=42 Score=31.96 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=48.2
Q ss_pred eeEeEEeeCCCCCEEEEEeCCCcEEEEECC---------CCCcce--EEee-------e-cCCCeEEEEeeCCC---CEE
Q 014114 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---------AQRRPV--MSFD-------F-RETPIKAVAEEPDS---FNI 273 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~~~~~--~~~~-------~-~~~~i~~~~~s~~~---~~l 273 (430)
|..+.. ++.|..++..+.+|.+.++=.+ .++..+ +++. . ..-.+..++|+|+. ..|
T Consensus 106 V~~vl~--s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 106 VYQVLL--SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEe--cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 445555 8899999999999977665322 121101 1111 0 11245678899976 567
Q ss_pred EEEcCCCCEEEEEccCCeEE
Q 014114 274 YIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~~~~~ 293 (430)
..-+.|+.|++||+...+.+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 77789999999999765443
No 493
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.52 E-value=87 Score=32.43 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCCCCEEEEEccCCeEE--eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 268 PDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
+++..++.| .|+...+-|.. |... .++.- .....++.+ +.+++++-+ ++.|.||+..++++++++
T Consensus 210 ~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~w--s~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 210 SDQSELLLG-KDNIGVVVDLN-GIIAQRGTLVW--SEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred cCCceEEEc-cCceEEEEecC-CcccCCCceEe--cccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 455456655 66666666753 3331 11110 112222222 556776665 459999999999988885
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.22 E-value=38 Score=28.06 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=67.3
Q ss_pred ecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee--ec
Q 014114 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FR 257 (430)
Q Consensus 180 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~ 257 (430)
.-.+|.-..+|..+.+++..+.-. +.-..++. ++..|+.+....+++.-|..+... ..... ..
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~y~----------GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~-~~~v~VT~~ 171 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFSYE----------GEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAE-LDTVQVTDD 171 (262)
T ss_pred EeccceeEEEChHHhhhhcccccC----------Ccceeeec----CCcceEeeCCceEEEecCHHHhhh-cceEEEEEC
Confidence 345677788888887776555432 22334443 555577666666777766655321 11111 11
Q ss_pred CCC---eEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe-----------ccccCcEEEEEEcCCC-CEEEEE
Q 014114 258 ETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----------GKCSGSIRSIARHPTL-PIIASC 319 (430)
Q Consensus 258 ~~~---i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----------~~~~~~v~~i~~s~~~-~~l~s~ 319 (430)
..+ +.-+.|- +|...|-.=.+..|...|..+|+.+..+. ..+..-.+.|++.|++ +++++|
T Consensus 172 g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 172 GVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred Ceecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 122 2233342 45444444444556666667776655443 1224567889999887 555665
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.17 E-value=33 Score=27.57 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCeEEEEeeCCC------CEEEEEcCCCCEEEEEccC
Q 014114 259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 259 ~~i~~~~~s~~~------~~l~~~~~dg~v~iwd~~~ 289 (430)
..+..++|||.| -+|++-+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999955 3678888999999998753
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.87 E-value=11 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.1
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 014114 226 DHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~ 246 (430)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466888899999999999763
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.84 E-value=26 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=25.8
Q ss_pred cCcEEEEEEcCCC------CEEEEEeCCCeEEEEeCCC
Q 014114 301 SGSIRSIARHPTL------PIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 301 ~~~v~~i~~s~~~------~~l~s~~~d~~v~iwd~~~ 332 (430)
...|.+++|||.| -+|++...++.|.||....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3479999999954 3688888999999998653
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.58 E-value=15 Score=25.71 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=29.8
Q ss_pred EcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 276 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+..+|.+.-||..+++....+.+ -.-.+.|++++|+.+|+.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEEe
Confidence 34567888999998876555555 35679999999999776663
No 499
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=76.21 E-value=78 Score=30.64 Aligned_cols=133 Identities=14% Similarity=0.209 Sum_probs=72.6
Q ss_pred CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-cCCCeE
Q 014114 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIK 262 (430)
Q Consensus 184 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~i~ 262 (430)
|.+.+-+-.++..+........ .-|+.+.+ .. ...+-.++...-+..|+..+...+.....+ ..++|.
T Consensus 354 g~L~van~stG~~v~sv~q~Rg--------~nit~~~~--d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~ 422 (671)
T COG3292 354 GELMVANGSTGELVRSVHQLRG--------MNITTTLE--DS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVS 422 (671)
T ss_pred ceEEEecCCCCcEEEEeeeccc--------cccchhhh--cc-CCcEEEEecccchhhhccCCcccccccccCCccccee
Confidence 3455555556665555332221 22555666 33 445556666645566666652221222221 346788
Q ss_pred EEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe--cc--ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GK--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 263 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~--~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
.|.=.|+++ |..|+.+|.++. +.+.++....+. .| ..+.|..+.+-|+|++-+.++ +| |..|+.+
T Consensus 423 aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq 491 (671)
T COG3292 423 AIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQ 491 (671)
T ss_pred eeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccc
Confidence 887788887 888988885544 444444333222 11 134577888899997643332 33 6777654
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=75.88 E-value=8.8 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeee
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+.+++.+|.|.-.|..+|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 366779999999999999999988876
Done!