Query 014114
Match_columns 430
No_of_seqs 605 out of 2900
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:45:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.8E-44 6E-49 324.6 39.8 294 41-375 24-320 (321)
2 1vyh_C Platelet-activating fac 100.0 4.8E-44 1.6E-48 333.0 38.6 288 42-374 101-409 (410)
3 1nr0_A Actin interacting prote 100.0 4E-44 1.4E-48 350.6 38.9 340 15-375 161-610 (611)
4 1got_B GT-beta; complex (GTP-b 100.0 2.2E-42 7.4E-47 314.0 42.0 293 40-373 46-340 (340)
5 2pbi_B Guanine nucleotide-bind 100.0 4.7E-42 1.6E-46 313.3 41.6 297 41-373 56-354 (354)
6 2ynn_A Coatomer subunit beta'; 100.0 3.5E-42 1.2E-46 307.6 39.9 292 41-376 5-302 (304)
7 3ow8_A WD repeat-containing pr 100.0 1.4E-41 4.7E-46 305.7 38.1 272 15-331 49-320 (321)
8 2ymu_A WD-40 repeat protein; u 100.0 1.5E-41 5E-46 330.9 41.3 312 15-373 234-577 (577)
9 3iz6_a 40S ribosomal protein R 100.0 1.8E-42 6.1E-47 319.4 31.9 319 25-376 47-375 (380)
10 4gqb_B Methylosome protein 50; 100.0 2.5E-41 8.4E-46 306.4 37.2 306 26-376 16-331 (344)
11 1vyh_C Platelet-activating fac 100.0 1.2E-41 4.2E-46 316.8 35.5 270 15-331 121-410 (410)
12 4g56_B MGC81050 protein; prote 100.0 1.8E-41 6.3E-46 309.6 33.5 313 16-376 18-343 (357)
13 1nr0_A Actin interacting prote 100.0 1.2E-40 4.1E-45 325.9 41.2 312 13-376 28-397 (611)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-40 1.7E-44 299.0 38.5 302 40-377 6-336 (345)
15 4ery_A WD repeat-containing pr 100.0 1.8E-39 6.3E-44 291.2 40.1 292 40-375 14-311 (312)
16 2ymu_A WD-40 repeat protein; u 100.0 1.2E-39 4.2E-44 317.4 41.6 315 15-376 193-539 (577)
17 3frx_A Guanine nucleotide-bind 100.0 2E-39 6.9E-44 291.6 38.6 293 40-376 8-317 (319)
18 1got_B GT-beta; complex (GTP-b 100.0 1.7E-39 5.7E-44 294.9 36.9 267 15-329 68-340 (340)
19 2pm9_A Protein WEB1, protein t 100.0 1.1E-40 3.8E-45 311.3 29.9 332 16-376 27-414 (416)
20 2ynn_A Coatomer subunit beta'; 100.0 3.5E-39 1.2E-43 288.1 36.3 274 15-332 26-302 (304)
21 2hes_X YDR267CP; beta-propelle 100.0 7.7E-39 2.6E-43 289.2 37.5 302 40-376 5-328 (330)
22 2xzm_R RACK1; ribosome, transl 100.0 1.4E-38 4.6E-43 289.4 39.1 296 41-376 13-340 (343)
23 1erj_A Transcriptional repress 100.0 2.2E-38 7.4E-43 293.4 40.5 314 23-376 39-389 (393)
24 1r5m_A SIR4-interacting protei 100.0 6.9E-39 2.3E-43 299.7 36.8 314 16-375 60-424 (425)
25 3frx_A Guanine nucleotide-bind 100.0 2.4E-38 8.1E-43 284.7 36.5 275 15-333 31-318 (319)
26 2pbi_B Guanine nucleotide-bind 100.0 2.4E-38 8.2E-43 288.7 36.9 268 15-329 77-354 (354)
27 3vl1_A 26S proteasome regulato 100.0 6.1E-39 2.1E-43 300.0 33.7 323 15-376 69-419 (420)
28 4gqb_B Methylosome protein 50; 100.0 1.3E-38 4.5E-43 288.5 33.3 285 13-335 40-334 (344)
29 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-37 1.6E-41 289.5 43.1 305 14-377 129-443 (445)
30 3iz6_a 40S ribosomal protein R 100.0 4.8E-39 1.7E-43 296.4 28.5 276 15-335 79-378 (380)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-37 5.3E-42 282.5 35.2 284 15-338 29-341 (345)
32 1erj_A Transcriptional repress 100.0 3.2E-37 1.1E-41 285.5 37.0 283 13-333 74-390 (393)
33 2xzm_R RACK1; ribosome, transl 100.0 4.2E-37 1.4E-41 279.6 36.7 277 15-334 40-342 (343)
34 4aow_A Guanine nucleotide-bind 100.0 1.6E-36 5.4E-41 275.3 40.2 314 19-376 9-337 (340)
35 1gxr_A ESG1, transducin-like e 100.0 8.7E-37 3E-41 276.5 38.3 310 18-374 25-335 (337)
36 3zwl_B Eukaryotic translation 100.0 9.5E-37 3.3E-41 279.7 38.5 300 40-376 23-346 (369)
37 4g56_B MGC81050 protein; prote 100.0 1.2E-37 4.2E-42 284.3 31.8 282 15-335 55-346 (357)
38 1sq9_A Antiviral protein SKI8; 100.0 3.2E-37 1.1E-41 286.1 34.7 307 41-376 8-395 (397)
39 2hes_X YDR267CP; beta-propelle 100.0 3.5E-37 1.2E-41 278.4 33.3 277 15-332 25-328 (330)
40 4ery_A WD repeat-containing pr 100.0 1.4E-36 4.7E-41 272.5 36.1 271 15-331 36-311 (312)
41 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-37 5.1E-42 328.4 33.8 325 15-378 628-1160(1249)
42 1pgu_A Actin interacting prote 100.0 2.9E-37 9.9E-42 302.8 33.2 326 16-376 175-614 (615)
43 3v7d_B Cell division control p 100.0 2.8E-36 9.5E-41 285.8 38.4 313 13-372 131-459 (464)
44 4h5i_A Guanine nucleotide-exch 100.0 1.1E-37 3.6E-42 285.5 27.6 298 54-376 17-343 (365)
45 2oaj_A Protein SNI1; WD40 repe 100.0 5.2E-36 1.8E-40 303.7 42.7 328 15-374 30-659 (902)
46 3gre_A Serine/threonine-protei 100.0 1.8E-37 6.3E-42 291.6 29.3 309 28-373 47-437 (437)
47 3dm0_A Maltose-binding peripla 100.0 3.1E-36 1.1E-40 299.4 39.7 293 43-375 376-692 (694)
48 3odt_A Protein DOA1; ubiquitin 100.0 8.1E-36 2.8E-40 267.3 38.1 288 40-377 9-297 (313)
49 3ei3_B DNA damage-binding prot 100.0 1.6E-36 5.4E-41 280.2 34.4 293 41-376 65-382 (383)
50 1sq9_A Antiviral protein SKI8; 100.0 1.3E-36 4.4E-41 282.1 33.6 294 14-334 26-397 (397)
51 4aow_A Guanine nucleotide-bind 100.0 7.6E-36 2.6E-40 270.8 37.0 277 15-334 52-339 (340)
52 3k26_A Polycomb protein EED; W 100.0 1.4E-36 4.8E-41 278.4 30.3 301 45-375 14-365 (366)
53 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-37 7.3E-42 294.4 24.2 326 17-377 176-518 (524)
54 2pm7_B Protein transport prote 100.0 1.2E-35 4.2E-40 264.2 33.5 250 42-376 2-285 (297)
55 3vl1_A 26S proteasome regulato 100.0 9.8E-37 3.3E-41 285.1 27.5 274 62-376 65-365 (420)
56 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-36 5.5E-41 320.6 31.3 333 13-377 712-1208(1249)
57 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-35 6.4E-40 271.7 34.4 289 46-376 5-361 (372)
58 2pm9_A Protein WEB1, protein t 100.0 2.7E-36 9.1E-41 281.6 29.0 289 56-378 17-339 (416)
59 4gga_A P55CDC, cell division c 100.0 5E-35 1.7E-39 273.4 37.4 274 16-338 117-401 (420)
60 4aez_A CDC20, WD repeat-contai 100.0 3.2E-35 1.1E-39 273.1 35.7 275 15-338 104-386 (401)
61 3i2n_A WD repeat-containing pr 100.0 8.4E-36 2.9E-40 272.3 31.3 299 44-377 13-354 (357)
62 1r5m_A SIR4-interacting protei 100.0 2.1E-35 7E-40 276.1 32.9 316 23-376 24-361 (425)
63 3zwl_B Eukaryotic translation 100.0 2.4E-34 8.4E-39 263.6 39.0 283 15-338 45-352 (369)
64 3dm0_A Maltose-binding peripla 100.0 2.9E-35 9.8E-40 292.5 35.2 275 15-331 396-692 (694)
65 4e54_B DNA damage-binding prot 100.0 1.1E-35 3.8E-40 279.1 29.8 293 45-377 115-431 (435)
66 4ggc_A P55CDC, cell division c 100.0 9.5E-35 3.3E-39 261.0 34.7 276 16-334 37-317 (318)
67 4aez_A CDC20, WD repeat-contai 100.0 1.4E-34 4.9E-39 268.7 36.6 286 47-377 89-381 (401)
68 3k26_A Polycomb protein EED; W 100.0 1.3E-35 4.5E-40 271.9 28.1 284 15-331 35-365 (366)
69 3dw8_B Serine/threonine-protei 100.0 4.1E-35 1.4E-39 276.3 31.7 309 48-374 27-444 (447)
70 1gxr_A ESG1, transducin-like e 100.0 9.1E-34 3.1E-38 256.6 39.1 268 16-331 65-336 (337)
71 1k8k_C P40, ARP2/3 complex 41 100.0 8.8E-35 3E-39 267.1 32.4 282 15-336 21-365 (372)
72 4a11_B DNA excision repair pro 100.0 5.5E-35 1.9E-39 271.8 31.2 316 23-378 22-367 (408)
73 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-34 6.1E-39 292.3 36.5 319 15-376 26-386 (814)
74 3odt_A Protein DOA1; ubiquitin 100.0 5.4E-34 1.8E-38 255.4 35.2 272 15-341 30-305 (313)
75 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-34 1.5E-38 289.7 38.7 344 15-378 165-734 (902)
76 1pgu_A Actin interacting prote 100.0 6.1E-34 2.1E-38 279.2 38.7 311 17-375 33-365 (615)
77 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-34 4.8E-39 271.7 32.0 270 13-338 142-420 (435)
78 3mkq_A Coatomer beta'-subunit; 100.0 5E-34 1.7E-38 289.0 38.2 291 41-376 5-302 (814)
79 3dwl_C Actin-related protein 2 100.0 5.1E-36 1.7E-40 276.1 21.5 244 48-331 10-280 (377)
80 3v7d_B Cell division control p 100.0 1.3E-33 4.6E-38 267.4 37.6 292 42-377 114-422 (464)
81 3i2n_A WD repeat-containing pr 100.0 2.3E-34 7.9E-39 262.8 30.0 282 17-335 34-356 (357)
82 3ei3_B DNA damage-binding prot 100.0 9.4E-34 3.2E-38 261.6 33.3 269 15-332 87-382 (383)
83 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-33 7.8E-38 263.4 36.0 267 54-377 136-415 (435)
84 4gga_A P55CDC, cell division c 100.0 8.4E-33 2.9E-37 258.3 38.9 270 66-377 117-396 (420)
85 3mmy_A MRNA export factor; mRN 100.0 3.1E-33 1.1E-37 256.1 33.3 292 40-376 30-346 (368)
86 4a11_B DNA excision repair pro 100.0 5.9E-33 2E-37 258.1 35.0 320 15-376 57-405 (408)
87 4e54_B DNA damage-binding prot 100.0 6.9E-34 2.4E-38 266.9 28.6 281 15-335 133-433 (435)
88 3bg1_A Protein SEC13 homolog; 100.0 8E-34 2.8E-38 254.7 27.4 252 43-331 7-292 (316)
89 3f3f_A Nucleoporin SEH1; struc 100.0 9.7E-33 3.3E-37 250.7 34.5 276 42-339 4-344 (351)
90 1yfq_A Cell cycle arrest prote 100.0 1.9E-33 6.4E-38 255.3 29.2 280 45-374 7-322 (342)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-33 1E-37 259.9 31.1 281 17-376 50-342 (402)
92 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-32 6.5E-37 258.0 36.8 282 42-378 111-393 (445)
93 4h5i_A Guanine nucleotide-exch 100.0 7.5E-33 2.6E-37 253.3 32.7 274 25-333 44-344 (365)
94 3bg1_A Protein SEC13 homolog; 100.0 1.4E-33 4.9E-38 253.1 26.2 246 101-376 11-293 (316)
95 3lrv_A PRE-mRNA-splicing facto 100.0 2.4E-33 8E-38 254.9 27.4 273 62-374 45-331 (343)
96 4ggc_A P55CDC, cell division c 100.0 1.6E-31 5.4E-36 240.0 39.0 273 62-377 34-316 (318)
97 3gre_A Serine/threonine-protei 100.0 7.1E-34 2.4E-38 267.1 24.6 285 15-329 77-437 (437)
98 2pm7_B Protein transport prote 100.0 1E-32 3.4E-37 245.4 30.5 235 15-331 22-284 (297)
99 3dwl_C Actin-related protein 2 100.0 8.9E-34 3.1E-38 261.1 24.2 274 15-330 24-377 (377)
100 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-33 7E-38 267.0 25.4 277 63-363 171-460 (524)
101 3jrp_A Fusion protein of prote 100.0 2.8E-32 9.5E-37 251.0 31.7 261 40-337 2-292 (379)
102 3vu4_A KMHSV2; beta-propeller 100.0 2E-32 6.7E-37 249.7 29.7 287 40-377 10-337 (355)
103 3jrp_A Fusion protein of prote 100.0 1.4E-31 4.7E-36 246.3 34.2 255 86-376 2-287 (379)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.1E-31 2.8E-35 247.1 36.7 290 51-376 6-391 (450)
105 1yfq_A Cell cycle arrest prote 100.0 2.5E-31 8.5E-36 241.3 31.6 276 15-329 24-321 (342)
106 1l0q_A Surface layer protein; 100.0 9.9E-30 3.4E-34 235.2 41.8 273 15-340 3-283 (391)
107 3dw8_B Serine/threonine-protei 100.0 2E-31 6.9E-36 251.0 29.1 292 15-331 41-445 (447)
108 3f3f_A Nucleoporin SEH1; struc 100.0 1E-30 3.6E-35 237.3 31.4 248 101-377 9-338 (351)
109 3jro_A Fusion protein of prote 100.0 3.9E-31 1.3E-35 264.3 29.7 252 43-376 3-285 (753)
110 3bws_A Protein LP49; two-domai 100.0 7.2E-30 2.5E-34 239.5 36.5 312 19-376 94-432 (433)
111 2xyi_A Probable histone-bindin 100.0 2.3E-30 7.7E-35 242.5 32.3 257 45-333 124-411 (430)
112 2w18_A PALB2, fancn, partner a 100.0 1.1E-29 3.9E-34 221.7 34.1 270 67-374 56-355 (356)
113 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-31 4.8E-36 248.6 22.6 262 54-375 18-296 (588)
114 3mmy_A MRNA export factor; mRN 100.0 2.3E-30 8E-35 237.0 30.2 277 15-333 55-347 (368)
115 2w18_A PALB2, fancn, partner a 100.0 4.7E-30 1.6E-34 224.2 29.2 181 131-330 155-355 (356)
116 2xyi_A Probable histone-bindin 100.0 5.4E-30 1.9E-34 239.9 31.2 250 104-376 129-410 (430)
117 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-30 8.6E-35 234.9 27.3 261 15-330 49-331 (343)
118 1l0q_A Surface layer protein; 100.0 2.1E-28 7.1E-33 226.4 38.4 265 66-377 3-276 (391)
119 2aq5_A Coronin-1A; WD40 repeat 100.0 3.1E-30 1.1E-34 239.6 25.9 236 125-378 49-301 (402)
120 4gq1_A NUP37; propeller, trans 100.0 1.6E-29 5.6E-34 233.7 29.0 254 62-331 98-388 (393)
121 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-29 5.5E-34 234.9 27.8 281 15-364 28-349 (588)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-28 4E-33 232.4 33.1 243 54-332 105-391 (450)
123 4gq1_A NUP37; propeller, trans 100.0 2.5E-29 8.5E-34 232.4 24.3 229 124-374 102-387 (393)
124 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-28 1.9E-32 220.3 31.8 262 16-334 33-338 (355)
125 3jro_A Fusion protein of prote 100.0 4.4E-29 1.5E-33 249.5 24.8 236 15-332 22-285 (753)
126 3bws_A Protein LP49; two-domai 100.0 5.6E-27 1.9E-31 219.8 34.8 267 15-332 135-432 (433)
127 1nir_A Nitrite reductase; hemo 100.0 3.2E-26 1.1E-30 219.3 34.9 313 15-378 150-516 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.6E-25 3.3E-29 202.9 32.3 291 17-360 78-411 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-24 4.7E-29 201.9 29.4 272 66-376 76-387 (415)
130 1nir_A Nitrite reductase; hemo 99.9 1.9E-23 6.4E-28 200.2 34.4 284 62-378 146-460 (543)
131 3u4y_A Uncharacterized protein 99.9 4.3E-22 1.5E-26 179.6 34.0 273 65-376 10-304 (331)
132 1pby_B Quinohemoprotein amine 99.9 8.8E-23 3E-27 184.3 28.0 279 16-342 3-320 (337)
133 3vgz_A Uncharacterized protein 99.9 1.1E-21 3.6E-26 178.5 34.8 267 55-366 44-334 (353)
134 1ri6_A Putative isomerase YBHE 99.9 4.6E-22 1.6E-26 180.0 31.5 297 17-358 8-334 (343)
135 2ojh_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 179.9 26.2 256 70-366 17-292 (297)
136 1ri6_A Putative isomerase YBHE 99.9 1.2E-21 4.3E-26 177.2 32.2 272 66-376 5-308 (343)
137 1pby_B Quinohemoprotein amine 99.9 6E-22 2.1E-26 178.8 29.1 267 66-377 2-311 (337)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2E-22 6.9E-27 200.7 28.4 319 15-377 36-436 (706)
139 2ojh_A Uncharacterized protein 99.9 2E-22 6.8E-27 178.3 22.3 257 19-323 17-293 (297)
140 1k32_A Tricorn protease; prote 99.9 6.3E-22 2.2E-26 205.1 28.6 199 165-376 247-461 (1045)
141 2ecf_A Dipeptidyl peptidase IV 99.9 7.1E-22 2.4E-26 197.8 28.1 311 15-375 49-458 (741)
142 2ecf_A Dipeptidyl peptidase IV 99.9 7E-22 2.4E-26 197.9 26.9 294 54-375 39-412 (741)
143 3u4y_A Uncharacterized protein 99.9 4.9E-21 1.7E-25 172.6 28.0 277 14-334 10-306 (331)
144 1k32_A Tricorn protease; prote 99.9 8.7E-21 3E-25 196.5 33.0 191 164-375 297-501 (1045)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-21 6E-26 194.5 26.8 308 14-360 27-423 (723)
146 1xfd_A DIP, dipeptidyl aminope 99.9 7.1E-22 2.4E-26 197.3 21.4 291 55-376 20-393 (723)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 4.5E-22 1.5E-26 185.6 17.5 210 163-377 37-279 (434)
148 3scy_A Hypothetical bacterial 99.9 4.5E-19 1.5E-23 161.8 34.6 301 15-355 14-360 (361)
149 3hfq_A Uncharacterized protein 99.9 2.8E-19 9.6E-24 162.3 32.4 278 21-337 13-324 (347)
150 3o4h_A Acylamino-acid-releasin 99.9 1.1E-20 3.8E-25 183.8 22.8 267 54-375 24-314 (582)
151 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-19 5.8E-24 163.6 28.6 293 15-342 12-335 (349)
152 3vgz_A Uncharacterized protein 99.9 4.3E-19 1.5E-23 161.2 30.6 247 105-377 42-304 (353)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 5.3E-20 1.8E-24 171.6 24.2 196 124-333 49-279 (434)
154 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-19 4.1E-24 180.7 28.3 276 22-334 99-437 (706)
155 3hfq_A Uncharacterized protein 99.9 3.4E-18 1.1E-22 155.1 34.3 239 126-376 53-317 (347)
156 1jmx_B Amine dehydrogenase; ox 99.8 1E-18 3.5E-23 158.4 27.0 232 123-377 11-326 (349)
157 3scy_A Hypothetical bacterial 99.8 2.2E-17 7.6E-22 150.6 35.5 281 67-376 15-337 (361)
158 1z68_A Fibroblast activation p 99.8 1.3E-19 4.6E-24 180.7 20.5 325 14-376 26-443 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-17 4.2E-22 152.5 28.8 284 15-333 3-342 (365)
160 3o4h_A Acylamino-acid-releasin 99.8 3.2E-18 1.1E-22 166.4 25.3 257 15-332 34-315 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 4E-17 1.4E-21 149.1 30.5 281 67-376 4-341 (365)
162 2oiz_A Aromatic amine dehydrog 99.8 7.4E-17 2.5E-21 146.7 29.8 294 22-359 29-360 (361)
163 1z68_A Fibroblast activation p 99.8 4.6E-19 1.6E-23 176.8 15.7 282 62-376 24-391 (719)
164 3pe7_A Oligogalacturonate lyas 99.8 2E-17 6.9E-22 152.3 24.9 272 62-376 44-382 (388)
165 1q7f_A NHL, brain tumor CG1071 99.8 4.6E-15 1.6E-19 130.5 31.0 247 54-335 32-283 (286)
166 1q7f_A NHL, brain tumor CG1071 99.7 5.3E-15 1.8E-19 130.1 31.2 239 105-376 31-280 (286)
167 4a5s_A Dipeptidyl peptidase 4 99.7 1.5E-16 5E-21 159.0 23.5 253 56-337 21-358 (740)
168 4a5s_A Dipeptidyl peptidase 4 99.7 3.7E-16 1.3E-20 156.1 25.3 325 15-376 28-449 (740)
169 3fvz_A Peptidyl-glycine alpha- 99.7 2.3E-15 7.9E-20 135.2 28.1 208 163-376 91-322 (329)
170 3fvz_A Peptidyl-glycine alpha- 99.7 6.6E-15 2.3E-19 132.2 27.8 250 54-332 26-322 (329)
171 2oiz_A Aromatic amine dehydrog 99.7 4.7E-15 1.6E-19 134.8 27.0 269 63-377 13-335 (361)
172 3pe7_A Oligogalacturonate lyas 99.7 4.2E-15 1.4E-19 136.8 25.6 233 124-377 48-330 (388)
173 3c5m_A Oligogalacturonate lyas 99.7 5.8E-16 2E-20 142.9 19.0 268 62-375 44-381 (396)
174 3dsm_A Uncharacterized protein 99.7 1.9E-14 6.4E-19 129.1 27.9 269 73-375 15-301 (328)
175 3dsm_A Uncharacterized protein 99.7 7.4E-14 2.5E-18 125.3 30.9 269 22-341 15-310 (328)
176 3azo_A Aminopeptidase; POP fam 99.7 2E-14 6.7E-19 142.0 28.8 284 17-337 38-374 (662)
177 3azo_A Aminopeptidase; POP fam 99.7 1.1E-14 3.6E-19 143.9 26.3 195 161-373 128-364 (662)
178 2z2n_A Virginiamycin B lyase; 99.7 2.1E-12 7.1E-17 114.0 38.3 276 54-375 17-294 (299)
179 1qks_A Cytochrome CD1 nitrite 99.7 7.5E-13 2.6E-17 126.5 37.3 314 15-377 168-539 (567)
180 2dg1_A DRP35, lactonase; beta 99.7 6.6E-14 2.3E-18 125.9 27.0 259 62-360 14-293 (333)
181 3no2_A Uncharacterized protein 99.7 2.8E-13 9.5E-18 118.0 29.3 239 64-339 4-259 (276)
182 2gop_A Trilobed protease; beta 99.6 1.9E-13 6.6E-18 123.6 26.4 240 74-375 42-330 (347)
183 3no2_A Uncharacterized protein 99.6 1.3E-13 4.4E-18 120.1 24.1 214 122-363 4-230 (276)
184 1rwi_B Serine/threonine-protei 99.6 2.8E-13 9.4E-18 117.9 26.1 227 125-377 37-265 (270)
185 1qks_A Cytochrome CD1 nitrite 99.6 2.6E-12 8.8E-17 122.9 34.2 284 63-377 165-478 (567)
186 2xdw_A Prolyl endopeptidase; a 99.6 1E-12 3.5E-17 130.6 32.1 283 62-377 80-415 (710)
187 3e5z_A Putative gluconolactona 99.6 1.1E-12 3.8E-17 115.8 28.2 220 125-374 42-284 (296)
188 1rwi_B Serine/threonine-protei 99.6 6.6E-13 2.3E-17 115.5 26.0 241 54-335 26-267 (270)
189 2qc5_A Streptogramin B lactona 99.6 3.9E-11 1.3E-15 105.8 36.9 274 54-374 22-298 (300)
190 2dg1_A DRP35, lactonase; beta 99.6 4.5E-12 1.5E-16 113.9 31.0 255 17-322 20-300 (333)
191 3sjl_D Methylamine dehydrogena 99.6 3.2E-12 1.1E-16 114.8 28.8 298 15-357 45-384 (386)
192 3e5z_A Putative gluconolactona 99.6 1.5E-12 5.1E-17 115.0 26.4 230 62-337 36-291 (296)
193 2xdw_A Prolyl endopeptidase; a 99.6 8.8E-13 3E-17 131.1 27.8 244 53-334 126-416 (710)
194 3c5m_A Oligogalacturonate lyas 99.6 1.4E-13 4.8E-18 126.8 18.2 191 167-377 85-330 (396)
195 2mad_H Methylamine dehydrogena 99.5 7.2E-11 2.4E-15 107.3 34.7 270 62-378 29-352 (373)
196 1kb0_A Quinohemoprotein alcoho 99.5 4.9E-12 1.7E-16 124.1 28.7 317 14-360 77-533 (677)
197 2z2n_A Virginiamycin B lyase; 99.5 5.8E-11 2E-15 104.6 33.1 224 125-375 28-254 (299)
198 2bkl_A Prolyl endopeptidase; m 99.5 1.5E-12 5.1E-17 129.1 25.1 280 62-377 76-398 (695)
199 1yiq_A Quinohemoprotein alcoho 99.5 4.9E-12 1.7E-16 124.4 28.1 319 14-360 70-531 (689)
200 3sjl_D Methylamine dehydrogena 99.5 2.4E-11 8.3E-16 109.1 28.1 272 62-378 41-365 (386)
201 2mad_H Methylamine dehydrogena 99.5 2.4E-10 8.1E-15 103.9 34.6 282 15-339 33-357 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.2E-11 1.8E-15 105.9 29.9 223 129-376 42-299 (314)
203 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2E-10 6.8E-15 105.0 33.9 307 14-374 53-376 (376)
204 2bkl_A Prolyl endopeptidase; m 99.5 1.8E-12 6.1E-17 128.5 21.6 243 53-335 122-400 (695)
205 2gop_A Trilobed protease; beta 99.5 4.7E-12 1.6E-16 114.4 22.5 183 163-375 59-290 (347)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.2E-11 1.4E-15 106.4 26.0 235 62-332 26-299 (314)
207 2qc5_A Streptogramin B lactona 99.5 6.6E-10 2.3E-14 97.8 33.3 266 15-331 31-299 (300)
208 1yr2_A Prolyl oligopeptidase; 99.5 2.2E-11 7.4E-16 121.6 26.1 197 166-376 212-441 (741)
209 1yr2_A Prolyl oligopeptidase; 99.5 2.6E-11 8.8E-16 121.1 26.2 243 53-334 164-443 (741)
210 3c75_H MADH, methylamine dehyd 99.4 1.1E-10 3.8E-15 106.7 27.4 284 15-339 85-409 (426)
211 3g4e_A Regucalcin; six bladed 99.4 3.1E-10 1.1E-14 100.0 29.3 216 125-365 27-262 (297)
212 1xip_A Nucleoporin NUP159; bet 99.4 4.8E-12 1.7E-16 114.1 17.6 179 164-360 39-227 (388)
213 1xip_A Nucleoporin NUP159; bet 99.4 1.6E-11 5.5E-16 110.7 20.5 179 105-319 39-231 (388)
214 3c75_H MADH, methylamine dehyd 99.4 1.3E-10 4.4E-15 106.3 24.9 273 62-379 81-405 (426)
215 3hrp_A Uncharacterized protein 99.4 7.5E-10 2.6E-14 102.0 29.4 227 125-374 144-408 (409)
216 3hxj_A Pyrrolo-quinoline quino 99.4 9.4E-11 3.2E-15 105.0 21.6 295 13-376 29-324 (330)
217 2hz6_A Endoplasmic reticulum t 99.4 2.8E-14 9.7E-19 129.9 -2.3 260 64-375 8-278 (369)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 3.8E-09 1.3E-13 94.3 29.9 213 125-366 63-293 (326)
219 3hrp_A Uncharacterized protein 99.3 3E-09 1E-13 98.0 29.8 240 54-330 133-408 (409)
220 1yiq_A Quinohemoprotein alcoho 99.3 2.4E-09 8.1E-14 105.3 30.8 286 66-378 71-507 (689)
221 1fwx_A Nitrous oxide reductase 99.3 1.1E-09 3.7E-14 102.6 25.0 265 68-361 18-402 (595)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.3 9.9E-09 3.4E-13 93.7 30.8 272 66-377 54-338 (376)
223 3dr2_A Exported gluconolactona 99.3 1.5E-09 5.1E-14 96.1 24.3 214 125-367 59-298 (305)
224 1kb0_A Quinohemoprotein alcoho 99.3 3.2E-09 1.1E-13 104.2 28.9 285 66-378 78-509 (677)
225 1kv9_A Type II quinohemoprotei 99.3 1.7E-09 5.8E-14 106.1 25.7 299 14-342 66-498 (668)
226 2ad6_A Methanol dehydrogenase 99.3 2.6E-09 8.8E-14 102.7 26.3 304 14-360 62-520 (571)
227 2iwa_A Glutamine cyclotransfer 99.3 4.8E-09 1.6E-13 89.2 24.6 208 154-376 12-237 (266)
228 3g4e_A Regucalcin; six bladed 99.2 6.5E-09 2.2E-13 91.6 26.0 214 64-320 24-260 (297)
229 2hz6_A Endoplasmic reticulum t 99.2 3.6E-12 1.2E-16 116.0 5.0 205 123-359 9-216 (369)
230 2qe8_A Uncharacterized protein 99.2 3.9E-09 1.3E-13 95.1 24.3 205 162-375 66-320 (343)
231 3iuj_A Prolyl endopeptidase; h 99.2 2.9E-09 9.9E-14 105.3 25.1 241 53-335 130-408 (693)
232 1mda_H Methylamine dehydrogena 99.2 1.5E-09 5E-14 97.7 20.2 266 25-340 47-354 (368)
233 2ghs_A AGR_C_1268P; regucalcin 99.2 2.9E-08 1E-12 88.6 28.0 214 62-320 57-290 (326)
234 1w6s_A Methanol dehydrogenase 99.2 2E-08 7E-13 96.4 27.0 312 14-360 62-529 (599)
235 3dr2_A Exported gluconolactona 99.2 7.4E-09 2.5E-13 91.6 22.2 193 163-376 45-267 (305)
236 3nol_A Glutamine cyclotransfer 99.1 4E-08 1.4E-12 82.5 23.2 202 153-372 33-250 (262)
237 2ece_A 462AA long hypothetical 99.1 1.4E-07 5E-12 85.4 27.8 227 124-364 97-399 (462)
238 3hxj_A Pyrrolo-quinoline quino 99.1 7.4E-09 2.5E-13 92.5 18.7 250 67-374 32-282 (330)
239 1flg_A Protein (quinoprotein e 99.1 1.1E-07 3.8E-12 91.4 27.2 187 167-360 250-542 (582)
240 1kv9_A Type II quinohemoprotei 99.1 1.5E-07 5E-12 92.4 28.4 286 66-378 67-490 (668)
241 1fwx_A Nitrous oxide reductase 99.1 2E-08 6.8E-13 94.2 20.9 252 55-334 90-433 (595)
242 3iuj_A Prolyl endopeptidase; h 99.0 3.6E-08 1.2E-12 97.5 23.0 195 166-376 178-405 (693)
243 3nok_A Glutaminyl cyclase; bet 99.0 1.8E-07 6.2E-12 78.5 23.5 190 153-360 45-248 (268)
244 3mbr_X Glutamine cyclotransfer 99.0 4.4E-07 1.5E-11 75.6 25.7 191 153-360 11-217 (243)
245 1mda_H Methylamine dehydrogena 99.0 2.2E-08 7.6E-13 90.0 19.4 251 76-378 47-348 (368)
246 1npe_A Nidogen, entactin; glyc 99.0 4.4E-06 1.5E-10 72.0 32.3 252 65-359 1-263 (267)
247 2qe8_A Uncharacterized protein 99.0 2.5E-07 8.4E-12 83.2 23.8 253 55-329 20-318 (343)
248 2ad6_A Methanol dehydrogenase 98.9 1.9E-06 6.5E-11 82.7 30.4 284 67-378 64-496 (571)
249 4a2l_A BT_4663, two-component 98.9 5.7E-05 2E-09 75.9 40.6 317 15-375 226-570 (795)
250 2ece_A 462AA long hypothetical 98.9 4.8E-07 1.6E-11 82.0 22.0 198 172-376 93-352 (462)
251 4a2l_A BT_4663, two-component 98.9 4.9E-05 1.7E-09 76.4 39.3 311 14-375 273-613 (795)
252 1w6s_A Methanol dehydrogenase 98.8 6.9E-06 2.3E-10 78.9 28.3 288 67-378 64-505 (599)
253 1flg_A Protein (quinoprotein e 98.8 1.4E-05 4.7E-10 76.9 28.9 284 67-378 70-518 (582)
254 2iwa_A Glutamine cyclotransfer 98.7 2.9E-05 1E-09 65.9 27.2 178 132-333 43-238 (266)
255 3nol_A Glutamine cyclotransfer 98.7 6.5E-06 2.2E-10 69.1 22.6 126 180-321 103-244 (262)
256 2fp8_A Strictosidine synthase; 98.7 9.7E-06 3.3E-10 72.0 25.5 199 164-376 81-313 (322)
257 1npe_A Nidogen, entactin; glyc 98.7 4.7E-05 1.6E-09 65.5 27.4 195 163-376 36-238 (267)
258 3v9f_A Two-component system se 98.7 0.0003 1E-08 70.6 37.1 282 54-375 315-610 (781)
259 3qqz_A Putative uncharacterize 98.7 2.6E-05 8.7E-10 65.9 24.6 201 163-375 27-252 (255)
260 2fp8_A Strictosidine synthase; 98.6 4.6E-05 1.6E-09 67.6 26.5 237 62-331 27-312 (322)
261 3v9f_A Two-component system se 98.6 0.00027 9.2E-09 70.9 35.0 318 15-376 222-568 (781)
262 3mbr_X Glutamine cyclotransfer 98.6 0.0002 6.9E-09 59.6 26.8 171 125-320 33-222 (243)
263 3nok_A Glutaminyl cyclase; bet 98.5 3.7E-05 1.3E-09 64.6 22.0 170 125-320 67-253 (268)
264 1k3i_A Galactose oxidase precu 98.5 4E-05 1.4E-09 75.1 24.1 268 64-365 197-530 (656)
265 2p4o_A Hypothetical protein; p 98.4 0.00015 5.2E-09 63.7 24.8 195 162-376 31-242 (306)
266 2xe4_A Oligopeptidase B; hydro 98.4 1.7E-05 5.9E-10 79.0 19.7 194 164-372 175-394 (751)
267 3amr_A 3-phytase; beta-propell 98.3 0.00025 8.6E-09 62.2 22.0 188 173-375 39-262 (355)
268 3v65_B Low-density lipoprotein 98.3 0.0012 4.2E-08 59.9 27.9 199 162-376 115-318 (386)
269 3p5b_L Low density lipoprotein 98.3 0.0021 7.2E-08 58.7 31.2 201 161-376 110-320 (400)
270 3tc9_A Hypothetical hydrolase; 98.3 0.00032 1.1E-08 64.8 23.8 155 164-331 138-300 (430)
271 4hw6_A Hypothetical protein, I 98.3 0.0003 1E-08 65.0 23.4 198 164-375 140-373 (433)
272 3v65_B Low-density lipoprotein 98.2 0.0027 9.1E-08 57.7 29.2 233 67-339 89-325 (386)
273 2p4o_A Hypothetical protein; p 98.2 0.0021 7.1E-08 56.3 28.1 227 62-323 40-279 (306)
274 1ijq_A LDL receptor, low-densi 98.2 0.0022 7.4E-08 56.5 31.1 199 162-376 29-238 (316)
275 3v64_C Agrin; beta propeller, 98.2 0.0025 8.7E-08 56.9 28.8 197 163-376 73-275 (349)
276 3qqz_A Putative uncharacterize 98.2 0.002 6.7E-08 54.4 26.4 203 104-330 27-251 (255)
277 3sov_A LRP-6, low-density lipo 98.1 0.0043 1.5E-07 54.6 26.8 199 163-377 35-239 (318)
278 3ei3_A DNA damage-binding prot 98.1 0.013 4.6E-07 60.7 33.3 179 185-377 808-1000(1158)
279 3v64_C Agrin; beta propeller, 98.1 0.0049 1.7E-07 55.0 30.9 233 67-339 46-282 (349)
280 3m0c_C LDL receptor, low-densi 98.0 0.016 5.6E-07 57.5 30.6 200 162-375 423-631 (791)
281 3amr_A 3-phytase; beta-propell 98.0 0.0036 1.2E-07 54.9 22.7 204 63-297 38-272 (355)
282 3ei3_A DNA damage-binding prot 98.0 0.025 8.6E-07 58.7 38.5 318 17-377 526-914 (1158)
283 1k3i_A Galactose oxidase precu 97.9 0.00057 2E-08 67.0 18.6 199 166-376 246-497 (656)
284 2xe4_A Oligopeptidase B; hydro 97.9 0.00024 8.3E-09 70.7 15.9 154 215-375 175-353 (751)
285 3tc9_A Hypothetical hydrolase; 97.9 0.00042 1.4E-08 64.0 16.4 153 215-376 138-301 (430)
286 4hw6_A Hypothetical protein, I 97.9 0.015 5.1E-07 53.6 27.8 158 163-331 228-432 (433)
287 2xzh_A Clathrin heavy chain 1; 97.9 0.01 3.5E-07 51.2 27.3 236 62-335 75-335 (365)
288 1ijq_A LDL receptor, low-densi 97.8 0.013 4.4E-07 51.5 32.7 236 67-339 3-245 (316)
289 3sov_A LRP-6, low-density lipo 97.8 0.017 5.7E-07 50.8 29.4 234 67-339 6-245 (318)
290 1n7d_A LDL receptor, low-densi 97.7 0.00023 8E-09 70.0 12.3 199 163-376 406-614 (699)
291 3p5b_L Low density lipoprotein 97.7 0.029 1E-06 51.0 34.5 238 67-339 85-327 (400)
292 2xbg_A YCF48-like protein; pho 97.6 0.017 5.9E-07 50.9 22.2 195 163-374 122-320 (327)
293 2xzh_A Clathrin heavy chain 1; 97.6 0.025 8.4E-07 48.9 30.3 190 167-375 71-331 (365)
294 2p9w_A MAL S 1 allergenic prot 97.6 0.0059 2E-07 53.1 18.0 162 165-333 15-216 (334)
295 1bpo_A Protein (clathrin); cla 97.6 0.039 1.3E-06 49.7 28.2 237 62-336 74-335 (494)
296 2p9w_A MAL S 1 allergenic prot 97.5 0.0061 2.1E-07 53.0 16.2 158 215-375 14-214 (334)
297 4a0p_A LRP6, LRP-6, low-densit 97.5 0.088 3E-06 51.0 30.1 221 130-376 12-237 (628)
298 3s94_A LRP-6, low-density lipo 97.5 0.091 3.1E-06 50.8 26.1 198 163-376 40-243 (619)
299 1n7d_A LDL receptor, low-densi 97.4 0.0017 5.7E-08 63.9 13.0 161 165-339 455-621 (699)
300 3kya_A Putative phosphatase; s 97.4 0.089 3.1E-06 48.9 27.5 163 164-338 248-481 (496)
301 1bpo_A Protein (clathrin); cla 97.4 0.076 2.6E-06 47.8 29.3 190 167-375 70-330 (494)
302 3m0c_C LDL receptor, low-densi 97.3 0.16 5.3E-06 50.5 32.2 238 67-339 397-639 (791)
303 3kya_A Putative phosphatase; s 97.3 0.013 4.5E-07 54.4 17.1 154 215-375 140-340 (496)
304 3sre_A PON1, serum paraoxonase 97.3 0.083 2.9E-06 46.8 24.4 199 166-373 53-295 (355)
305 3sre_A PON1, serum paraoxonase 97.3 0.036 1.2E-06 49.2 18.9 136 235-376 81-252 (355)
306 2be1_A Serine/threonine-protei 97.2 0.0014 4.7E-08 57.7 8.9 150 175-334 11-185 (339)
307 2be1_A Serine/threonine-protei 97.1 0.012 4.1E-07 51.8 14.0 200 66-294 11-236 (339)
308 3pbp_A Nucleoporin NUP82; beta 96.9 0.19 6.4E-06 45.3 19.9 145 173-328 31-208 (452)
309 2xbg_A YCF48-like protein; pho 96.8 0.25 8.6E-06 43.4 22.3 190 163-370 80-273 (327)
310 3pbp_A Nucleoporin NUP82; beta 96.8 0.084 2.9E-06 47.5 16.3 128 153-285 53-208 (452)
311 1tl2_A L10, protein (tachylect 96.7 0.023 7.9E-07 46.1 11.0 148 164-325 42-203 (236)
312 3s94_A LRP-6, low-density lipo 96.6 0.57 2E-05 45.2 28.6 235 67-338 11-249 (619)
313 2vpj_A Kelch-like protein 12; 96.6 0.26 8.9E-06 42.5 18.7 148 173-336 62-235 (301)
314 1xi4_A Clathrin heavy chain; a 96.6 0.3 1E-05 51.0 20.8 236 62-335 74-334 (1630)
315 4a0p_A LRP6, LRP-6, low-densit 96.6 0.61 2.1E-05 45.1 31.7 231 67-337 8-242 (628)
316 1xi4_A Clathrin heavy chain; a 96.4 0.1 3.4E-06 54.4 16.3 107 167-288 70-187 (1630)
317 2xn4_A Kelch-like protein 2; s 96.3 0.46 1.6E-05 41.0 19.6 145 173-335 108-279 (302)
318 3a9g_A Putative uncharacterize 96.3 0.56 1.9E-05 41.7 28.9 62 259-320 259-330 (354)
319 3ii7_A Kelch-like protein 7; p 96.3 0.37 1.2E-05 41.7 17.7 183 173-376 55-272 (306)
320 2ism_A Putative oxidoreductase 96.2 0.62 2.1E-05 41.4 21.4 186 163-363 75-332 (352)
321 2xn4_A Kelch-like protein 2; s 96.2 0.38 1.3E-05 41.5 17.3 183 173-376 61-276 (302)
322 3sbq_A Nitrous-oxide reductase 96.1 0.94 3.2E-05 42.3 25.4 73 259-333 323-409 (638)
323 1tl2_A L10, protein (tachylect 96.1 0.055 1.9E-06 43.9 10.0 111 259-375 41-162 (236)
324 1cru_A Protein (soluble quinop 96.1 0.6 2.1E-05 43.1 18.7 105 215-321 28-163 (454)
325 2ism_A Putative oxidoreductase 96.0 0.74 2.5E-05 40.8 27.2 60 259-320 268-333 (352)
326 2vpj_A Kelch-like protein 12; 95.9 0.73 2.5E-05 39.6 23.9 145 173-335 112-281 (301)
327 3das_A Putative oxidoreductase 95.9 0.71 2.4E-05 40.7 17.5 149 163-319 32-219 (347)
328 3ii7_A Kelch-like protein 7; p 95.7 0.93 3.2E-05 39.1 22.4 147 173-336 101-276 (306)
329 3a9g_A Putative uncharacterize 95.5 1.2 4.2E-05 39.5 24.0 186 163-363 73-329 (354)
330 1zgk_A Kelch-like ECH-associat 95.4 0.69 2.3E-05 40.0 15.6 146 173-336 70-244 (308)
331 1zgk_A Kelch-like ECH-associat 95.2 1.1 3.9E-05 38.6 16.3 183 173-376 24-240 (308)
332 2g8s_A Glucose/sorbosone dehyd 94.9 1.9 6.5E-05 38.2 27.6 61 259-319 271-340 (353)
333 2uvk_A YJHT; unknown function, 94.9 1.5 5.2E-05 38.7 16.7 61 281-344 286-354 (357)
334 4asc_A Kelch repeat and BTB do 94.8 1.8 6.2E-05 37.4 18.9 104 226-336 98-225 (315)
335 3s25_A Hypothetical 7-bladed b 94.7 1.9 6.4E-05 37.3 17.1 173 169-376 59-255 (302)
336 4asc_A Kelch repeat and BTB do 94.7 1.9 6.5E-05 37.3 21.4 145 173-335 98-280 (315)
337 3ott_A Two-component system se 94.0 5.3 0.00018 39.5 37.6 200 163-375 324-544 (758)
338 2woz_A Kelch repeat and BTB do 93.1 4 0.00014 35.3 17.6 104 226-335 109-234 (318)
339 3ott_A Two-component system se 92.7 8.5 0.00029 38.0 33.5 269 54-372 24-303 (758)
340 3das_A Putative oxidoreductase 92.0 6 0.00021 34.8 30.4 249 56-320 36-326 (347)
341 3s25_A Hypothetical 7-bladed b 91.8 4.2 0.00014 35.0 13.6 134 224-376 61-216 (302)
342 2uvk_A YJHT; unknown function, 91.5 5.8 0.0002 34.9 14.7 95 173-279 19-128 (357)
343 2woz_A Kelch repeat and BTB do 91.3 6.6 0.00023 33.8 19.9 145 173-335 109-290 (318)
344 1cru_A Protein (soluble quinop 91.0 9.3 0.00032 35.1 28.7 55 271-326 370-430 (454)
345 2zwa_A Leucine carboxyl methyl 90.3 14 0.00049 36.1 18.6 157 172-334 396-579 (695)
346 2wg3_C Hedgehog-interacting pr 90.0 5 0.00017 37.0 12.9 108 259-367 14-160 (463)
347 3sbq_A Nitrous-oxide reductase 89.7 13 0.00046 34.8 24.9 280 15-320 71-453 (638)
348 1zi0_A DNA gyrase subunit A; b 89.3 9.9 0.00034 32.7 25.1 212 63-288 1-225 (307)
349 1suu_A DNA gyrase subunit A; t 88.7 11 0.00038 32.5 24.1 213 63-289 6-231 (312)
350 2g8s_A Glucose/sorbosone dehyd 88.6 12 0.00042 32.9 27.6 60 302-361 271-337 (353)
351 2zwa_A Leucine carboxyl methyl 86.9 11 0.00039 36.7 14.0 151 173-336 451-639 (695)
352 3uc1_A DNA gyrase subunit A; D 86.8 15 0.00051 31.9 24.0 175 103-288 94-278 (327)
353 4gq2_M Nucleoporin NUP120; bet 85.6 34 0.0012 34.9 20.8 38 260-297 237-274 (950)
354 3uc1_A DNA gyrase subunit A; D 85.4 18 0.00061 31.5 21.5 251 66-331 4-278 (327)
355 3q6k_A 43.2 kDa salivary prote 85.4 20 0.00067 32.0 21.3 173 185-364 124-342 (381)
356 1suu_A DNA gyrase subunit A; t 84.3 19 0.00066 31.0 24.1 205 124-332 9-231 (312)
357 3no0_A DNA gyrase subunit A; D 82.7 21 0.00071 30.1 21.6 206 103-331 23-245 (276)
358 4gq2_M Nucleoporin NUP120; bet 82.5 13 0.00044 37.9 12.4 40 302-341 236-275 (950)
359 3l6v_A GYRA, DNA gyrase subuni 82.5 26 0.00088 31.1 25.6 163 63-245 5-179 (370)
360 3zwu_A Alkaline phosphatase PH 80.6 6.1 0.00021 37.6 8.6 59 261-319 478-548 (592)
361 1zi0_A DNA gyrase subunit A; b 80.1 28 0.00095 29.9 23.5 198 124-332 4-226 (307)
362 3qhy_B Beta-lactamase inhibito 77.7 31 0.0011 29.1 15.6 183 164-376 25-207 (282)
363 1wp5_A Topoisomerase IV; broke 77.1 36 0.0012 29.5 25.0 215 16-246 7-225 (323)
364 4fhn_B Nucleoporin NUP120; pro 74.9 14 0.00049 38.5 10.3 39 303-341 239-277 (1139)
365 1wp5_A Topoisomerase IV; broke 74.0 43 0.0015 29.0 24.2 209 63-288 3-224 (323)
366 4a9v_A PHOX; hydrolase, beta-p 72.2 21 0.00071 33.7 9.4 61 260-320 477-549 (592)
367 4fhn_B Nucleoporin NUP120; pro 71.7 11 0.00038 39.3 8.5 38 260-297 239-276 (1139)
368 2wg3_C Hedgehog-interacting pr 71.1 63 0.0022 29.6 28.6 70 250-320 266-354 (463)
369 3zwu_A Alkaline phosphatase PH 63.5 23 0.00078 33.7 8.0 56 303-360 477-544 (592)
370 3l6v_A GYRA, DNA gyrase subuni 62.2 84 0.0029 27.8 25.5 199 124-332 8-265 (370)
371 3q6k_A 43.2 kDa salivary prote 60.5 91 0.0031 27.7 17.0 137 238-376 124-306 (381)
372 3f7f_A Nucleoporin NUP120; nuc 60.1 16 0.00054 35.5 6.3 38 302-341 222-259 (729)
373 3qhy_B Beta-lactamase inhibito 58.7 81 0.0028 26.5 18.6 207 132-377 41-247 (282)
374 3no0_A DNA gyrase subunit A; D 57.1 86 0.003 26.3 17.6 158 64-245 79-245 (276)
375 4a9v_A PHOX; hydrolase, beta-p 53.7 61 0.0021 30.6 8.9 57 302-360 476-544 (592)
376 1zvt_A Topoisomerase IV subuni 50.4 1.1E+02 0.0037 25.4 14.9 152 67-246 4-163 (256)
377 3f7f_A Nucleoporin NUP120; nuc 48.7 28 0.00094 33.9 5.9 37 260-298 223-259 (729)
378 3b7f_A Glycosyl hydrolase, BNR 42.3 1.8E+02 0.0061 25.6 14.5 99 227-328 22-143 (394)
379 3kci_A Probable E3 ubiquitin-p 39.7 2E+02 0.0068 25.4 27.3 244 125-376 64-345 (389)
380 3kci_A Probable E3 ubiquitin-p 37.3 2.2E+02 0.0074 25.1 22.0 244 125-376 12-293 (389)
381 3b7f_A Glycosyl hydrolase, BNR 32.1 2.6E+02 0.0088 24.5 17.3 69 260-328 116-204 (394)
382 4hvt_A Ritya.17583.B, post-pro 30.0 4E+02 0.014 26.0 24.0 96 235-331 318-429 (711)
383 3al9_A Plexin-A2; beta-propell 25.0 2.2E+02 0.0076 26.6 7.9 68 260-327 401-476 (539)
384 1q47_A Semaphorin 3A; beta pro 23.8 2E+02 0.0068 26.6 7.2 64 125-188 423-487 (495)
385 3mez_B Mannose-specific lectin 23.5 1.9E+02 0.0065 20.1 6.7 8 353-360 62-69 (113)
386 1q47_A Semaphorin 3A; beta pro 23.4 2.5E+02 0.0085 25.9 7.8 57 228-284 422-487 (495)
387 3mez_B Mannose-specific lectin 23.4 1.9E+02 0.0065 20.1 10.0 25 305-331 59-83 (113)
388 1ic9_A TH10AOX; three stranded 23.3 25 0.00085 16.8 0.5 11 6-16 11-21 (29)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=324.62 Aligned_cols=294 Identities=14% Similarity=0.242 Sum_probs=250.0
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee--eeeecCCCCCCCCCCceEEEEeeccCccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
+...+.+|...+..++++.+..+++.+|++|+.|++|+||++..++... .+.+ +...|.++.+.+...
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g--------h~~~v~~~~~~~~~~-- 93 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG--------HQLGVVSVDISHTLP-- 93 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECSSSS--
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc--------CCCCEEEEEECCCCC--
Confidence 3456678999988888887666778899999999999999997765433 3444 346888888876444
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 198 (430)
.+++++.|+.+++|++.... .+..+. .+...+.+++|+|++++|++++.++.|++|++.+++...
T Consensus 94 ------~l~s~s~D~~i~lWd~~~~~--------~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 94 ------IAASSSLDAHIRLWDLENGK--------QIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp ------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred ------EEEEEeCCCcEEEEECCCCC--------EEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 89999999999999986432 334443 345678899999999999999999999999999999888
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.+..+. ..+.+++| +|++++|++++.|+.|++||+++++ .+..+.+|..+|.+++|+|++++|++|+.
T Consensus 159 ~~~~~~---------~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 159 SLDTRG---------KFILSIAY--SPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp EEECSS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred EecCCC---------ceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 877654 56999999 8999999999999999999999865 58889999999999999999999999999
Q ss_pred CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
|+.|++||+++++.+..+.+| ...|.+++|+|++++|++++.|++|+|||+.+++++.. +.+|.. .|++++|+|+|
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~h~~-~v~~v~~s~~g 302 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT--FFDHQD-QVWGVKYNGNG 302 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSS-CEEEEEECTTS
T ss_pred CCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE--EcCCCC-cEEEEEECCCC
Confidence 999999999999999999998 89999999999999999999999999999999999988 566744 46999999999
Q ss_pred ce-eeecCCCcEEEecCC
Q 014114 359 VA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 359 ~~-~~~~~d~~v~vw~~~ 375 (430)
.+ ++++.|+.|++||.+
T Consensus 303 ~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEEETTCCEEEEECC
T ss_pred CEEEEEeCCCeEEEEeCC
Confidence 98 999999999999964
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-44 Score=333.04 Aligned_cols=288 Identities=13% Similarity=0.206 Sum_probs=252.5
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...+.+|...+.++++ +|++++|++|+.||.|+|||+.+++....+.+|. +.|.++.+.+..
T Consensus 101 ~~~l~gh~~~V~~~~~----~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~--------~~V~~v~~~~~~------ 162 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIF----HPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--------DSVQDISFDHSG------ 162 (410)
T ss_dssp SCEEECCSSCEEEEEE----CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--------SCEEEEEECTTS------
T ss_pred eEeecccCCcEEEEEE----cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC--------CcEEEEEEcCCC------
Confidence 4456678888555554 6678899999999999999999999988887755 688889887643
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
..+++++.|+.+++|++.... .++.+. .|...|.+++|+|++++|++|+.|++|++||+.++.++..+.
T Consensus 163 --~~l~sgs~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 163 --KLLASCSADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp --SEEEEEETTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CEEEEEeCCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 399999999999999985422 333333 467899999999999999999999999999999999998888
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCC------------
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD------------ 269 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~------------ 269 (430)
.|. ..|.++.| +|++.+|++++.|+.|++||+.+++ ....+..|...|.+++|+|+
T Consensus 232 ~h~---------~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 232 GHR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp CCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CCC---------ccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 765 67999999 8999999999999999999999866 47788899999999999996
Q ss_pred --------CCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 270 --------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 270 --------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
+.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++++|++++.|+.|++||+.+++++.. +
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~--~ 376 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--L 376 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE--E
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE--E
Confidence 678999999999999999999999999998 89999999999999999999999999999999999888 5
Q ss_pred ccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 342 KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 342 ~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
.+|.. .|++++|+|++.+ ++++.|+.|++|+.
T Consensus 377 ~~h~~-~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 NAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 67744 4699999999998 99999999999985
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4e-44 Score=350.56 Aligned_cols=340 Identities=12% Similarity=0.115 Sum_probs=264.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+|++|+.|+.|++||.... +....+.+|...+..+++ +|+|++|++|+.|++|+|||+.+++.+..+...
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~H~~~V~~v~f----spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSVRY----NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp CEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEEEE----CTTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred eEEEEEeCCCeEEEEECCCC-----eEeeeeccccCceEEEEE----CCCCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 36999999999999998765 667788899988555554 668889999999999999999999887766320
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc------------------------cccCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS 150 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~------------------------~~~~~ 150 (430)
.....+|.+.|.++.|.+... .|++++.|+.+++|++..... .+.+.
T Consensus 232 -~~~~~~h~~~V~~v~~spdg~--------~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 232 -SLKNVAHSGSVFGLTWSPDGT--------KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp -TSSSCSSSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred -cccccccCCCEEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 001113557899999877444 899999999999999753221 12345
Q ss_pred cceeeEEee----------ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-CCCCCC------------
Q 014114 151 CSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNS------------ 207 (430)
Q Consensus 151 ~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~------------ 207 (430)
++.+++|+. .|...|.+++|+|++++|++++.|++|++||+.+++....+. .|....
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 667777764 356789999999999999999999999999998876544331 110000
Q ss_pred ------------------------------------------------------------CCcccCcceeEeEEeeCCCC
Q 014114 208 ------------------------------------------------------------LGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 208 ------------------------------------------------------------~~~~~~~~v~~~~~~~~~~~ 227 (430)
..+.+...+.+++| +|++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~--spdg 460 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL--SNDK 460 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE--CTTS
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE--eCCC
Confidence 00011234678899 8999
Q ss_pred CEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC-CeEEeE-E-eccccCcE
Q 014114 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC-F-IGKCSGSI 304 (430)
Q Consensus 228 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~-~-~~~~~~~v 304 (430)
++|++|+.|+.|++||+............|...|++++|+|++++|++++.|+.|++||+.+ ++++.. + ..| ...|
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~V 539 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKV 539 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCE
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccce
Confidence 99999999999999999874321122267999999999999999999999999999999987 666554 2 336 8999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
++++|+|++++|++++.|++|+|||+.++.......+.+|....|.+++|+|++.+++++.|++|++|+..
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEecc
Confidence 99999999999999999999999999887633211266773445799999999998999999999999873
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-42 Score=313.96 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=248.7
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+...++.+|...+..++ | +|++++|++|+.||.|+|||+.+++.+..+..|. ..+.++.+.+...
T Consensus 46 ~~~~~l~gH~~~v~~~~--~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~--- 110 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMH--W--GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--------SWVMTCAYAPSGN--- 110 (340)
T ss_dssp CEEEEECCCSSCEEEEE--E--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--------SCEEEEEECTTSS---
T ss_pred hhheeecCCCCceEEEE--E--CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--------ccEEEEEECCCCC---
Confidence 34567888998855554 4 6788899999999999999999999888887654 5788888876444
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.+++++.|+.+++|++...... ....+. ...|.+.|.++.|++++. +++++.|+.|++||+.+++.+..
T Consensus 111 -----~l~s~~~d~~v~iw~~~~~~~~----~~~~~~-~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 111 -----YVACGGLDNICSIYNLKTREGN----VRVSRE-LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp -----EEEEEETTCEEEEEETTTCSBS----CEEEEE-EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred -----EEEEEeCCCeEEEEECccCCCc----ceeEEE-ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence 9999999999999998643210 011222 235778999999998765 88899999999999999999998
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
+..|. ..|.+++| +|++.+|++|+.|+.|++||++++. ++..+.+|...|.+++|+|++++|++|+.|
T Consensus 180 ~~~h~---------~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 180 FTGHT---------GDVMSLSL--APDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcCCC---------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 88765 67999999 8999999999999999999999866 478899999999999999999999999999
Q ss_pred CCEEEEEccCCeEEeEEecc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
+.|++||+++++.+..+..+ +...|++++|+|++++|++|+.|+.|++||+.+++.+.. +.+|.. .|.+++|+|+|
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--~~~h~~-~v~~~~~s~dg 324 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDN-RVSCLGVTDDG 324 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSS-CEEEEEECTTS
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE--eecCCC-cEEEEEEcCCC
Confidence 99999999999888777532 135799999999999999999999999999999998887 667854 46999999999
Q ss_pred ce-eeecCCCcEEEec
Q 014114 359 VA-NAAADAPMLEIQN 373 (430)
Q Consensus 359 ~~-~~~~~d~~v~vw~ 373 (430)
.+ ++++.|+.|++|+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 98 9999999999996
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.7e-42 Score=313.27 Aligned_cols=297 Identities=12% Similarity=0.108 Sum_probs=250.6
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
....+.+|...+.++++ +|++++|++|+.||+|+|||..+++....+..+. ..+.++.+.+...
T Consensus 56 ~~~~l~gH~~~V~~~~~----s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--------~~v~~~~~sp~g~---- 119 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDW----CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--------TWVMACAYAPSGC---- 119 (354)
T ss_dssp EEEEEECCSSCEEEEEE----CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--------SCCCEEEECTTSS----
T ss_pred EEEEecCCCCeEEEEEE----CCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC--------CCEEEEEECCCCC----
Confidence 45677889998655555 5678899999999999999999888887776643 4677788776444
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 200 (430)
.+++++.|+.+.+|++....... ......... .|...|.+++|+|++..|++++.|++|++||+.+++.+..+
T Consensus 120 ----~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 120 ----AIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp ----EEEEESTTSEEEEEECCCCTTCC--SGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----EEEEeeCCCCEEEEEEecccccc--ccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999987543211 011222233 47889999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 280 (430)
..|. ..|.++.|.+++++++|++|+.|+.|++||+++++ ++..+..|...|.+++|+|++.+|++|+.|+
T Consensus 193 ~~h~---------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 193 HGHG---------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp ECCS---------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCC---------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 8775 66999999655578899999999999999999866 4888899999999999999999999999999
Q ss_pred CEEEEEccCCeEEeEEecc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 281 DLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 281 ~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
.|++||+++++.+..+..+ +...+.+++|+|++++|++++.|+.|++||+.+++.+.. +.+|.. .|.+++|+|+|.
T Consensus 263 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--l~~h~~-~v~~l~~spdg~ 339 (354)
T 2pbi_B 263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI--LFGHEN-RVSTLRVSPDGT 339 (354)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--ECCCSS-CEEEEEECTTSS
T ss_pred eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE--EECCCC-cEEEEEECCCCC
Confidence 9999999998887776543 135789999999999999999999999999999998877 667754 469999999999
Q ss_pred e-eeecCCCcEEEec
Q 014114 360 A-NAAADAPMLEIQN 373 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~ 373 (430)
+ ++++.|+.|++|+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 9 9999999999996
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-42 Score=307.59 Aligned_cols=292 Identities=15% Similarity=0.166 Sum_probs=242.9
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
+..+|.+|...+..++ | +|++++|++|+.||.|+|||+.+++.+..+..|. ..+.++.+.+...
T Consensus 5 ~~~~~~~h~~~V~~~~--f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---- 68 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGID--F--HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--------TPVRAGKFIARKN---- 68 (304)
T ss_dssp CEEEEEEECSCEEEEE--E--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEEEEEEEGGGT----
T ss_pred eEEeecCCCCceEEEE--E--CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--------CcEEEEEEeCCCC----
Confidence 4567888888855554 4 6788999999999999999999999888887654 5788888877544
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeee
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWT 199 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~ 199 (430)
.+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++|+.|++|++||+.++. ....
T Consensus 69 ----~l~s~s~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 69 ----WIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp ----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred ----EEEEECCCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 99999999999999986432 344444 578899999999999999999999999999998874 4455
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC--CCCEEEEE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--DSFNIYIG 276 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 276 (430)
+..|. ..|.+++| +| ++.+|++|+.|+.|++||++...........|...+..+.|+| ++.+|++|
T Consensus 136 ~~~h~---------~~v~~v~~--~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 136 FEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp ECCCC---------SCEEEEEE--CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred hcccC---------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 66664 67999999 77 6789999999999999999886654444456678899999986 67899999
Q ss_pred cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
+.|+.|++||+++++++..+.+| ...|.+++|+|++++|++++.||+|++||+.+++.+.. +..+... +++++|+|
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~~~~~-~~~~~~~~ 280 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--LNVGLER-SWCIATHP 280 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE--ECCSSSS-EEEEEECT
T ss_pred cCCCeEEEEeCCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee--ccCCCcc-EEEEEECC
Confidence 99999999999999999999998 89999999999999999999999999999999999988 5556444 69999999
Q ss_pred Ccc--eeeecCCCcEEEecCCC
Q 014114 357 KEV--ANAAADAPMLEIQNGND 376 (430)
Q Consensus 357 ~g~--~~~~~~d~~v~vw~~~~ 376 (430)
++. +++++.+..+.+|+...
T Consensus 281 ~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 281 TGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp TCGGGCEEEEETTEEEEEECC-
T ss_pred CCCceEEEEecCCceEEEEecc
Confidence 875 35555566677776654
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=305.74 Aligned_cols=272 Identities=17% Similarity=0.141 Sum_probs=233.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+||+.||+|+||++..+ .......+.+|...+..+++ +|++.++++++.|+.|+|||+.+++.+..+..+
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~---~~~~~~~l~gh~~~v~~~~~----~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~ 121 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDE---RLDLQWSLEGHQLGVVSVDI----SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121 (321)
T ss_dssp CEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEE----CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEcCCCCEEEEECCCC---CeeeeeeeccCCCCEEEEEE----CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence 46999999999999999863 11233467788888655554 567789999999999999999999988888764
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..+.++.+.+.. ..+++++.+|.+.+|++.... .+..+. .+...|.+++|+|++
T Consensus 122 ~--------~~~~~~~~spdg--------~~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 122 P--------VDAWTLAFSPDS--------QYLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG 176 (321)
T ss_dssp T--------TCCCCEEECTTS--------SEEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred C--------ccEEEEEECCCC--------CEEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence 3 345567776643 499999999999999986432 222223 356789999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
++|++|+.|+.|++||+.+++.+..+..|. ..|.+++| +|++++|++++.|+.|++||++.+. ....+
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~--spd~~~l~s~s~dg~i~iwd~~~~~-~~~~~ 244 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHAN-LAGTL 244 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEE--CTTSCEEEEECTTSCEEEEETTTCC-EEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEE--cCCCCEEEEEcCCCeEEEEECCCcc-eeEEE
Confidence 999999999999999999999999888765 66999999 8999999999999999999999865 47888
Q ss_pred eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
.+|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+| ...|++++|+|++.+|++++.|+.|+|||..
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999963
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-41 Score=330.93 Aligned_cols=312 Identities=18% Similarity=0.271 Sum_probs=265.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++.||.|++|+... +.+..+.+|...+..+ .+ +|++++|++++.|+.|++||. +++.+..+.+|
T Consensus 234 ~~l~~~~~d~~i~~w~~~~------~~~~~~~~~~~~v~~v--~~--~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h 302 (577)
T 2ymu_A 234 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVNGV--AF--RPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 302 (577)
T ss_dssp SCEEEEETTSCEEEECTTS------CEEEEECCCSSCEEEE--EE--CTTSSEEEEEETTSCEEEEET-TSCEEEEECCC
T ss_pred CEEEEEeCCCEEEEEeCCC------CEEEEEecCCCCEEEE--EE--cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecC
Confidence 4688999999999999876 5677888888885554 44 678889999999999999996 56777777654
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc----------------------cccCCcc
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS 152 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----------------------~~~~~~~ 152 (430)
. ..+.++.+.+... .+++++.++.+++|++..... ..+..++
T Consensus 303 ~--------~~v~~~~~~~~~~--------~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 303 S--------SSVWGVAFSPDGQ--------TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp S--------SCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred C--------CCeEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 4 5788888866444 899999999999998643211 1345678
Q ss_pred eeeEEeec---------cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 153 ~i~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+++|+.. |...|.+++|+|++++|++++.|+.|++||. +++.+..+..|. ..|.+++|
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~-- 434 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAF-- 434 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEE--
Confidence 88888742 4567999999999999999999999999995 567777777665 66999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
+|++++|++++.|+.|++||... + .+..+.+|...|.+++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~ 510 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS 510 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred CCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence 89999999999999999999754 4 47888999999999999999999999999999999996 78899999998 899
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEec
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~ 373 (430)
|++++|+|++++|++++.|+.|+|||. +++++.. +.+|.. .|++++|+|||++ ++++.|+.|++||
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~--~~~h~~-~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGHSS-SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE--EECCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE--EcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999995 6788877 667854 4699999999999 9999999999997
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-42 Score=319.35 Aligned_cols=319 Identities=14% Similarity=0.093 Sum_probs=255.0
Q ss_pred cEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCC
Q 014114 25 LIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD 104 (430)
Q Consensus 25 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 104 (430)
.+..|+.... .....+.+|...+.++++ +|++++|++|+.||+|+|||+.+++.+..+..|. .
T Consensus 47 ~~~~~~~~~~-----~~~~~l~gH~~~V~~~~~----sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--------~ 109 (380)
T 3iz6_a 47 TAVSFNPTDL-----VCCRTLQGHSGKVYSLDW----TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--------P 109 (380)
T ss_dssp GCCCCCCCCC-----EEEEEECCCSSCEEEEEE----CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--------T
T ss_pred ccccccccee-----EEeecccccccEEEEEEE----cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--------C
Confidence 4445655543 556788999999655555 6678899999999999999999999888888755 4
Q ss_pred ceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecCC
Q 014114 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKG 183 (430)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 183 (430)
.+.++.+.+.. ..+++++.|+.+++|++......... ....+.+ ..|.+.|.++.|.|+ +..|++|+.|
T Consensus 110 ~v~~~~~s~~g--------~~las~~~d~~v~iw~~~~~~~~~~~-~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D 179 (380)
T 3iz6_a 110 WVMECAFAPNG--------QSVACGGLDSACSIFNLSSQADRDGN-MPVSRVL-TGHKGYASSCQYVPDQETRLITGSGD 179 (380)
T ss_dssp TCCCCEECTTS--------SEEEECCSSSCCEEEECCCCSSCCCS-STTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTT
T ss_pred CEEEEEECCCC--------CEEEEeeCCCcEEEEECCCCccccCC-ccceeec-cCCCcceEEEEEecCCCCEEEEECCC
Confidence 66667776643 49999999999999998653321100 0111122 257788999999986 5679999999
Q ss_pred CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEE
Q 014114 184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA 263 (430)
Q Consensus 184 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~ 263 (430)
++|++||+.+++.+..+.... ...|...|.++.|. ++++++|++|+.|+.|++||++....++..+.+|...|.+
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~~~~~-~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEF----PSGHTADVLSLSIN-SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCS----SSSCCSCEEEEEEC-SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred CcEEEEEcCCCcEEEEeeccc----CCCCccCeEEEEee-cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence 999999999999887763221 11234679999994 3488999999999999999998655568889999999999
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc------cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
++|+|++++|++|+.|++|++||+++++.+..+..+. ...|++++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence 9999999999999999999999999999988876541 2248999999999999999999999999999998877
Q ss_pred EEe--eccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 338 AVF--LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~--~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.+. ..+| ...|.+++|+|+|.+ ++++.|+.|++|+...
T Consensus 335 ~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 335 NLGTLQNSH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EECCSCSSC-CCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEecccCCC-CCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 642 1456 445799999999999 9999999999999765
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=306.42 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=227.3
Q ss_pred EEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC---CCCCCC
Q 014114 26 IKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD---SGAQPE 102 (430)
Q Consensus 26 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~ 102 (430)
.+.|++... . . ..++.. +.++.| +|||++|++++ |+++++||............+.. .....+
T Consensus 16 ~r~w~~~~~-----~-~---~~~~~~--v~~~~f--s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~ 81 (344)
T 4gqb_B 16 AREWNLPPN-----A-P---ACMERQ--LEAARY--RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT 81 (344)
T ss_dssp -------CC-----S-C---SSCCSE--EEEEEE--CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE
T ss_pred ccccCCCCC-----C-c---ccccCC--EEEEEE--CCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeecc
Confidence 467777652 1 1 124444 445555 77888888776 77888887421100000000000 000012
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
...|.++.|.+. +.+++++.||.|+||++...... ...+.....|...|.+++|+|++++|++|+.
T Consensus 82 ~~~v~~~~~s~d---------~~l~~~s~dg~v~lWd~~~~~~~-----~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~ 147 (344)
T 4gqb_B 82 EAGVADLTWVGE---------RGILVASDSGAVELWELDENETL-----IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147 (344)
T ss_dssp SSCEEEEEEETT---------TEEEEEETTSEEEEEEECTTSSC-----EEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEeCC---------CeEEEEECCCEEEEEeccCCCce-----eEeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence 246888888653 37999999999999998754321 1223334468899999999999999999999
Q ss_pred CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCCcceEEee--ecCC
Q 014114 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRET 259 (430)
Q Consensus 183 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~ 259 (430)
|++|++||+.+++.+..+..|. ..|.+++| ++++ .+|++++.|++|++||+++++. ...+. .|..
T Consensus 148 d~~i~iwd~~~~~~~~~~~~h~---------~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~ 215 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLSSYRAHA---------AQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGY 215 (344)
T ss_dssp TSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CC
T ss_pred CCeEEEEECCCCcEEEEEcCcC---------CceEEEEe--cCCCCCceeeeccccccccccccccce-eeeeecceeec
Confidence 9999999999999999998876 77999999 7776 5789999999999999998664 55543 4556
Q ss_pred CeEEEEeeCC-CCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceee
Q 014114 260 PIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 260 ~i~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
.+.+++|+|+ +++|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++|+.|++|+|||+.+++++.
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 8999999985 578899999999999999999999999998 9999999999998 579999999999999999887653
Q ss_pred EEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+.+|.+. |++++|+|++.. ++++.|+.|++|+...
T Consensus 295 ---~~~H~~~-V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 295 ---SQAHRDF-VRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ---ECCCSSC-EEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ---EcCCCCC-EEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 5678544 699999999875 6889999999999875
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-41 Score=316.79 Aligned_cols=270 Identities=11% Similarity=0.138 Sum_probs=237.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|+|||+.++ +....+.+|...+..+++ +|++++|++|+.||+|+|||+.+++++..+.+|
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~h~~~V~~v~~----~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 191 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISF----DHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEEE----CTTSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred CEEEEEeCCCeEEEEECCCC-----cEEEEEeccCCcEEEEEE----cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Confidence 46899999999999999986 677888999988655555 567889999999999999999998888877665
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..|.++.+.+... .+++++.|+.+++|++.... .+..+. .|...|.++.++|++
T Consensus 192 ~--------~~V~~v~~~p~~~--------~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 192 D--------HNVSSVSIMPNGD--------HIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG 246 (410)
T ss_dssp S--------SCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred C--------CCEEEEEEeCCCC--------EEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCC
Confidence 4 6889998877444 89999999999999986432 444444 577889999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC--------------------CCEEEEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--------------------HRKFVAGT 234 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~l~~~~ 234 (430)
.+|++|+.|+.|++||+.+++....+..|. ..|.+++| +|+ +.+|++|+
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEe
Confidence 999999999999999999999988887765 66999999 564 67899999
Q ss_pred CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC
Q 014114 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 235 ~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 314 (430)
.|+.|++||++++. ++..+.+|...|++++|+|++++|++|+.|+.|++||+.+++++..+.+| ...|++++|+|++.
T Consensus 316 ~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 316 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAP 393 (410)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCC
Confidence 99999999999865 58888999999999999999999999999999999999999999999998 89999999999999
Q ss_pred EEEEEeCCCeEEEEeCC
Q 014114 315 IIASCGLDSYLRFWDIK 331 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd~~ 331 (430)
+|++|+.|++|+||+++
T Consensus 394 ~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEETTSEEEEEC--
T ss_pred EEEEEeCCCcEEEEeCC
Confidence 99999999999999864
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-41 Score=309.58 Aligned_cols=313 Identities=14% Similarity=0.126 Sum_probs=228.5
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc------CCeEEEeccCCCceee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRV 89 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~------dg~i~iwd~~~~~~~~ 89 (430)
.++.++.+.....|++... ....|+..+..+ .| +|||++||+|+. ||.|++|+..++....
T Consensus 18 ~~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v--~f--SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVT---------APACMEVQIGAV--RY--RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -------------------------------CCCSEEEEE--EE--CSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred eEEecCCCccccccCCCCC---------CcccccCCEEEE--EE--CCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3455555677788877642 123577775544 45 678999999997 7889999987765443
Q ss_pred eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
.+... ...+...|.++.|.+. +.+++++.+|.|++|++....... ....-...|...|.+++
T Consensus 85 ~~~~~----~~~~~~~V~~~~~s~d---------~~~l~~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 85 SLCTA----GVQTEAGVTDVAWVSE---------KGILVASDSGAVELWEILEKESLL-----VNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp GGCSE----EEECSSCEEEEEEETT---------TEEEEEETTSCEEEC--------C-----CCCEEECCCSSCEEEEE
T ss_pred eEecc----cCCCCCCEEEEEEcCC---------CCEEEEECCCEEEEeeccccceeE-----EEeeccCCCCCCEEEEE
Confidence 32110 0023357888988763 267888999999999987543211 12222335788999999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCC
Q 014114 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 170 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~ 248 (430)
|+|++++|++|+.|+.|++||+.+++.+..+..|. ..|.+++| ++++ .++++++.|+.|++||+++++
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~ 215 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPK 215 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--ccCCCceeeeeccCCceEEEECCCCc
Confidence 99999999999999999999999999999998775 67999999 6776 478999999999999999866
Q ss_pred cceEEe--eecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC-CEEEEEeCCCe
Q 014114 249 RPVMSF--DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSY 324 (430)
Q Consensus 249 ~~~~~~--~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~s~~~d~~ 324 (430)
. ...+ ..|...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++++.|++
T Consensus 216 ~-~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 216 P-ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp C-BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred e-eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 4 3333 3466789999999974 68899999999999999999999999998 8999999999987 67999999999
Q ss_pred EEEEeCCCCceeeEEeeccccceeEEEeeecC-Ccce-eeecCCCcEEEecCCC
Q 014114 325 LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 325 v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|+|||+++++.+.. .+|. ..|++++|+| ++.+ ++++.|+.|++|+.+.
T Consensus 294 i~iwd~~~~~~~~~---~~H~-~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 294 VAVLDADFSEVFRD---LSHR-DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEECTTSCEEEEE---CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEEEECCCCcEeEE---CCCC-CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999988765 3564 4479999998 7877 8999999999999875
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-40 Score=325.91 Aligned_cols=312 Identities=11% Similarity=0.091 Sum_probs=254.1
Q ss_pred CCc-ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce--ee
Q 014114 13 PPL-RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RV 89 (430)
Q Consensus 13 p~~-~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~--~~ 89 (430)
|.. .+++++ ++.|+||++.++ .....+.+|...+.++++ +|+|++||+|+.||+|+|||+.+++. ..
T Consensus 28 pdg~~l~~~~-~~~v~l~~~~~~-----~~~~~~~~h~~~v~~~~~----spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 28 PAGDKIQYCN-GTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKT----SPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp TTSSEEEEEE-TTEEEEEETTCS-----SCCEEECCCSSCEEEEEE----CTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCCCEEEeCC-CCEEEEecCCCc-----ccCeEecCCCCceEEEEE----CCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence 444 455554 679999999865 667888899998666555 66889999999999999999876543 33
Q ss_pred eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC----CeeEEEEeeeecccccCCcceeeEEeeccCCce
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
.+..|. ..|.++.|.+... .+++++.+ +.+.+|+... .+..+ ..|...|
T Consensus 98 ~~~~~~--------~~v~~v~fs~dg~--------~l~~~~~~~~~~~~v~~wd~~~----------~~~~l-~gh~~~v 150 (611)
T 1nr0_A 98 TIPVFS--------GPVKDISWDSESK--------RIAAVGEGRERFGHVFLFDTGT----------SNGNL-TGQARAM 150 (611)
T ss_dssp EEECSS--------SCEEEEEECTTSC--------EEEEEECCSSCSEEEEETTTCC----------BCBCC-CCCSSCE
T ss_pred eecccC--------CceEEEEECCCCC--------EEEEEECCCCceeEEEEeeCCC----------Cccee-cCCCCCc
Confidence 444433 6889999877444 78877764 4677776321 11112 2577899
Q ss_pred EEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEEC
Q 014114 166 AFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 166 ~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~ 244 (430)
.+++|+|++. .|++|+.|++|++||..+++.+..+..|. ..|.+++| +|++++|++++.|++|++||+
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~---------~~V~~v~f--spdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRY--NPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEET
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc---------CceEEEEE--CCCCCEEEEEECCCcEEEEEC
Confidence 9999999986 69999999999999999998888888775 77999999 899999999999999999999
Q ss_pred CCCCcceEEee-------ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE---------------------
Q 014114 245 SAQRRPVMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF--------------------- 296 (430)
Q Consensus 245 ~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~--------------------- 296 (430)
.+++. +..+. +|...|.+++|+|++++|++++.|++|++||+.+++++..+
T Consensus 220 ~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 220 VDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp TTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred CCCcE-eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 88664 56663 79999999999999999999999999999999987765443
Q ss_pred ----------------------eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeee
Q 014114 297 ----------------------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 297 ----------------------~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 354 (430)
.+| ...|++++|+|++++|++++.|++|++||+.+++....+ ..+| ...+.+++|
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-~~~h-~~~v~~~~~ 375 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVH-ATMITGIKT 375 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-SCSC-SSCEEEEEE
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec-ccCC-cceEEEEEE
Confidence 355 889999999999999999999999999999998876642 2445 445799999
Q ss_pred cCCcceeeecCCCcEEEecCCC
Q 014114 355 ADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 355 s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
++++.+++++.|+.+++|+...
T Consensus 376 s~~~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 376 TSKGDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp CTTSCEEEEETTTEEEEECSSS
T ss_pred CCCCcEEEEEcCCceEEeecCC
Confidence 9998889999999999999765
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-40 Score=298.96 Aligned_cols=302 Identities=11% Similarity=0.062 Sum_probs=236.8
Q ss_pred hhheecCCCCc-ceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccc
Q 014114 40 KVVERWGDPHS-SKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
.++.++.+|.. .+ .+++| +|+|++||+|+.||.|+|||+.+++........ .++...|.++.|.+...
T Consensus 6 ~~~~~~~~h~~~~v--~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp~g~-- 74 (345)
T 3fm0_A 6 VLLGRVPAHPDSRC--WFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-----EGHQRTVRKVAWSPCGN-- 74 (345)
T ss_dssp EEEEEECCSTTSCE--EEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-----SSCSSCEEEEEECTTSS--
T ss_pred EEeeeecCCCCCcE--EEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-----cccCCcEEEEEECCCCC--
Confidence 34567777876 64 44555 678899999999999999999877644322211 13457899999877444
Q ss_pred cccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc---
Q 014114 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--- 195 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--- 195 (430)
.|++++.|+.+++|++..... ..+..+. .|...|.+++|+|++++|++|+.|+.|++||+.++.
T Consensus 75 ------~l~s~s~D~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 75 ------YLASASFDATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp ------EEEEEETTSCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred ------EEEEEECCCcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 999999999999999764321 1233333 577899999999999999999999999999998753
Q ss_pred eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC-cceEEeeecCCCeEEEEeeCCCCEEE
Q 014114 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 274 (430)
.+..+..|. ..|.+++| +|++.+|++++.|+.|++||++.+. .+...+.+|...|.+++|+|++++|+
T Consensus 142 ~~~~~~~h~---------~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 142 CVSVLNSHT---------QDVKHVVW--HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEEECCCC---------SCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEecCcC---------CCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 345555554 66999999 8999999999999999999998754 23567889999999999999999999
Q ss_pred EEcCCCCEEEEEccCC---------------eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----
Q 014114 275 IGNGSGDLASVDIRTG---------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL---- 335 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~---- 335 (430)
+|+.|+.|+|||.... +++..+.+.|...|++++|+|++..|++++.|+.|++|+...+..
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 9999999999997421 345566664589999999999999999999999999999875431
Q ss_pred eeEE---eeccccceeEEEeeecCCcc-e-eeecCCCcEEEecCCCC
Q 014114 336 LSAV---FLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 336 ~~~~---~~~~~~~~~i~~~~~s~~g~-~-~~~~~d~~v~vw~~~~~ 377 (430)
...+ .+.+|. ..|.+++|+|++. + ++++.||.|++|+....
T Consensus 291 ~~~~~~~~~~~h~-~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 291 TFSLTAHLHQAHS-QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp CEEEEEEETTSSS-SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred eEEEEeeeccccc-CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 1111 134564 4479999999985 5 89999999999998763
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-39 Score=291.23 Aligned_cols=292 Identities=17% Similarity=0.228 Sum_probs=243.6
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.+...+.+|...+..++ + +|++++|++|+.||.|+||++.+++....+..|. ..+.++.+.+...
T Consensus 14 ~~~~~~~gh~~~v~~~~--~--s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--------~~v~~~~~~~~~~--- 78 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVK--F--SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------LGISDVAWSSDSN--- 78 (312)
T ss_dssp EEEEEECCCSSCEEEEE--E--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--------SCEEEEEECTTSS---
T ss_pred eeEEEEcccCCcEEEEE--E--CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC--------CceEEEEEcCCCC---
Confidence 44567788988855554 4 6688899999999999999999998888776644 6788888877444
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++|+.|+.|++||+.+++.+..
T Consensus 79 -----~l~s~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 144 (312)
T 4ery_A 79 -----LLVSASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144 (312)
T ss_dssp -----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred -----EEEEECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence 99999999999999986432 344444 4678899999999999999999999999999999999888
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 279 (430)
+..|. ..|.++.| +|++++|++++.|+.|++||+++++........+...+.+++|+|++++|++++.|
T Consensus 145 ~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 145 LPAHS---------DPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred ecCCC---------CcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 87765 66999999 89999999999999999999998764333334566789999999999999999999
Q ss_pred CCEEEEEccCCeEEeEEeccccCcE---EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSI---RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v---~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~ 356 (430)
+.|++||+++++++..+.+| ...+ ......+++.+|++++.||.|++||+.+++.+.. +.+|.. .+.+++|+|
T Consensus 214 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~-~v~~~~~~p 289 (312)
T 4ery_A 214 NTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTD-VVISTACHP 289 (312)
T ss_dssp TEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE--ECCCSS-CEEEEEECS
T ss_pred CeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh--hhccCC-cEEEEeecC
Confidence 99999999999999999887 4432 2233346789999999999999999999998887 677744 469999999
Q ss_pred Ccce-eeec--CCCcEEEecCC
Q 014114 357 KEVA-NAAA--DAPMLEIQNGN 375 (430)
Q Consensus 357 ~g~~-~~~~--~d~~v~vw~~~ 375 (430)
++.+ ++++ .|+.|++|+.+
T Consensus 290 ~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 290 TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSEEEEEECTTTCCEEEEECC
T ss_pred cCCceEEEEccCCccEEEecCC
Confidence 9999 6664 69999999864
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-39 Score=317.38 Aligned_cols=315 Identities=19% Similarity=0.254 Sum_probs=265.4
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++.||.|++||... +.+..+..|...+..+++ +|++++|++++.||.|++||. +++.+..+..|
T Consensus 193 ~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~~~----s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~ 261 (577)
T 2ymu_A 193 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAF----SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 261 (577)
T ss_dssp SCEEEEETTSEEEEECTTS------CEEEEEECCSSCEEEEEE----CTTSSCEEEEETTSCEEEECT-TSCEEEEECCC
T ss_pred CEEEEEcCCCEEEEEeCCC------cEEEEEecCCCCEEEEEE----CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC
Confidence 4588999999999999876 567778888888555554 667889999999999999996 67777776654
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec------------------c----cccCCcc
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------V----SAESSCS 152 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~------------------~----~~~~~~~ 152 (430)
. ..+.++.+.+... .+++++.++.+++|+..... + .+++.++
T Consensus 262 ~--------~~v~~v~~~~d~~--------~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~ 325 (577)
T 2ymu_A 262 S--------SSVNGVAFRPDGQ--------TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325 (577)
T ss_dssp S--------SCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred C--------CCEEEEEEcCCCC--------EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence 3 5788888866443 89999999999999853211 1 1345678
Q ss_pred eeeEEeec---------cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 153 ~i~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+++|+.. |...|.+++|+|++++|++++.|+.|++||. +++.+..+..|. ..|.+++|
T Consensus 326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~-- 393 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVRGVAF-- 393 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC---------CCeEEEEE--
Confidence 89999753 3467899999999999999999999999995 567777777664 67999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
+|++++|++++.|+.|++||... + .+..+..|...|++++|+|++++|++++.|+.|++||. +++.+..+.+| ...
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~~~-~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~ 469 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS 469 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTC-C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred CCCCCEEEEEeCCCEEEEEeCCC-C-EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCC
Confidence 89999999999999999999653 4 47888999999999999999999999999999999997 67888899998 899
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|++++|+|++++|++++.|+.|++||. +++++.. +.+|... |++++|+|+|++ ++++.|+.|++||...
T Consensus 470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~--~~~h~~~-v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGHSSS-VRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE--EECCSSC-EEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE--EeCCCCC-EEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 999999999999999999999999995 6788877 6677544 699999999999 9999999999999643
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-39 Score=291.65 Aligned_cols=293 Identities=11% Similarity=0.125 Sum_probs=238.0
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC-----ceeeeeeecCCCCCCCCCCceEEEEeecc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-----DLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
.+..++.+|...+..++++.+ ++++|++|+.|++|++|++... ..+..+.+|. ..|.++.+.+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--------~~v~~~~~s~d 76 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--------HIVQDCTLTAD 76 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--------SCEEEEEECTT
T ss_pred EEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCccccccceEEeCCc--------ccEEEEEECCC
Confidence 456678899999776666542 2378999999999999998643 2344555544 68888888764
Q ss_pred CccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 014114 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 194 (430)
.. .+++++.|+.+++|++.... .+..+. .|...|.+++|+|++.+|++|+.|++|++||+. +
T Consensus 77 g~--------~l~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~ 138 (319)
T 3frx_A 77 GA--------YALSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138 (319)
T ss_dssp SS--------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-S
T ss_pred CC--------EEEEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Confidence 44 99999999999999986432 334443 578899999999999999999999999999996 4
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCC------CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~ 268 (430)
+.+..+..|. ..|.++.| .| ++..|++++.|+.|++||++..+ ....+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 139 QCLATLLGHN---------DWVSQVRV--VPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASP 206 (319)
T ss_dssp CEEEEECCCS---------SCEEEEEE--CCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECT
T ss_pred CeEEEEeccC---------CcEEEEEE--ccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcC
Confidence 5666666654 67999999 45 34589999999999999999855 4778889999999999999
Q ss_pred CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec-----c
Q 014114 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-----Q 343 (430)
Q Consensus 269 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~ 343 (430)
++++|++|+.|+.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|++..+..+..+... .
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc
Confidence 999999999999999999999999999886 4689999999999999988755 5999999887776663211 0
Q ss_pred ccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 344 HLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 344 ~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.....+.+++|+|||++ ++++.|+.|++|+...
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 11334689999999999 9999999999999754
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-39 Score=294.94 Aligned_cols=267 Identities=13% Similarity=0.201 Sum_probs=224.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc----eeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~----~~~~ 90 (430)
..|++|+.||.|+|||+.++ ..+..+..|...+. ++++ +|++++|++|+.|+.|++|++.+++ ....
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~~~~~v~--~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPLRSSWVM--TCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp SEEEEEETTTEEEEEETTTC-----CEEEEEECSSSCEE--EEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCC-----CcceEeecCCccEE--EEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 46899999999999999875 56677777877744 4555 6788999999999999999997653 2333
Q ss_pred eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+.+| ...+.++.+.+ ++.+++++.|+.+++|++.... .+..+. .|...|.+++|
T Consensus 139 ~~~h--------~~~v~~~~~~~---------~~~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~ 192 (340)
T 1got_B 139 LAGH--------TGYLSCCRFLD---------DNQIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSL 192 (340)
T ss_dssp EECC--------SSCEEEEEEEE---------TTEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEE
T ss_pred ecCC--------CccEEEEEECC---------CCcEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEE
Confidence 4443 35777777754 2369999999999999986432 333333 57789999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 171 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
+|++++|++|+.|+.|++||+.++..+..+..|. ..|.+++| +|++++|++++.|+.|++||++..+.
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~d~~v~iwd~~~~~~- 260 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFDLRADQE- 260 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence 9999999999999999999999999998888765 67999999 89999999999999999999998553
Q ss_pred eEEeee--cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 251 VMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 251 ~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
+..+.. +...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| ...|.+++|+|++.+|++|+.|+.|+||
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 444432 2347999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred e
Q 014114 329 D 329 (430)
Q Consensus 329 d 329 (430)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=311.31 Aligned_cols=332 Identities=11% Similarity=0.088 Sum_probs=257.3
Q ss_pred ceEee----------cCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-
Q 014114 16 RALTF----------DSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN- 84 (430)
Q Consensus 16 ~l~t~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~- 84 (430)
.+++| +.||.|+|||+.++... +.+..+ .|...+ .+++| +|++++|++|+.||.|+|||+.+
T Consensus 27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~~~~-~~~~~v--~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~ 99 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPIASL-QVDSKF--NDLDW--SHNNKIIAGALDNGSLELYSTNEA 99 (416)
T ss_dssp EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCSCCC-CCSSCE--EEEEE--CSSSSCEEEEESSSCEEEECCSST
T ss_pred EEEEEecCcccccccCCCCeEEEEEccCCCCC--cEEEEE-ecCCce--EEEEE--CCCCCeEEEEccCCeEEEeecccc
Confidence 57777 78999999999874110 122333 366664 45555 67888999999999999999987
Q ss_pred ---CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeE-Eeec
Q 014114 85 ---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVC 160 (430)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~-~~~~ 160 (430)
.+.+..+..| ...|.++.+.+.. ...+++++.||.+.+|++......... .....+ ....
T Consensus 100 ~~~~~~~~~~~~h--------~~~v~~~~~~~~~-------~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 163 (416)
T 2pm9_A 100 NNAINSMARFSNH--------SSSVKTVKFNAKQ-------DNVLASGGNNGEIFIWDMNKCTESPSN-YTPLTPGQSMS 163 (416)
T ss_dssp TSCCCEEEECCCS--------SSCCCEEEECSSS-------TTBEEEECSSSCEEBCBTTTTSSCTTT-CCCBCCCCSCC
T ss_pred cccccchhhccCC--------ccceEEEEEcCCC-------CCEEEEEcCCCeEEEEECCCCcccccc-ccccccccccC
Confidence 3455555544 3678888887641 248999999999999998754310000 000110 1124
Q ss_pred cCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCC-
Q 014114 161 ASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH- 237 (430)
Q Consensus 161 ~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg- 237 (430)
|...|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+..+... ..+...+.+++| +|++ .+|++++.|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEW--HPKNSTRVATATGSDN 238 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEE--CSSCTTEEEEEECCSS
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEE--CCCCCCEEEEEECCCC
Confidence 6788999999998 789999999999999999999988888765211 011267999999 7886 6899999999
Q ss_pred --cEEEEECCCCCcceEEee-ecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC
Q 014114 238 --QVRLYDTSAQRRPVMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 238 --~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
.|++||++++..++..+. +|...|.+++|+| ++++|++++.|+.|++||+++++++..+..| ...|++++|+|++
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEA 317 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTC
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCC
Confidence 999999998756677888 8999999999999 9999999999999999999999999999998 8999999999999
Q ss_pred -CEEEEEeCCCeEEEEeCCCCceeeEEe--------------eccc------------------cceeEEEeeecCCcce
Q 014114 314 -PIIASCGLDSYLRFWDIKTRQLLSAVF--------------LKQH------------------LNEVVFDSAFADKEVA 360 (430)
Q Consensus 314 -~~l~s~~~d~~v~iwd~~~~~~~~~~~--------------~~~~------------------~~~~i~~~~~s~~g~~ 360 (430)
.+|++++.|+.|+|||+.++....... ..+. ....+.+++|+|+|++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 899999999999999998766433210 0000 1334578999999999
Q ss_pred -eeecCCCcEEEecCCC
Q 014114 361 -NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 -~~~~~d~~v~vw~~~~ 376 (430)
++++.|+.|+||+...
T Consensus 398 la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKI 414 (416)
T ss_dssp ECBCTTSSCBCCBCCCC
T ss_pred EEEeCCCCeEEEEEecc
Confidence 8899999999999875
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-39 Score=288.14 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=229.3
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|+|||+.++ ..+..+..|...+..+++ .|++++|++|+.|+.|++||+.+++.+..+.+|
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~~v~~~~~----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 96 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTETPVRAGKF----IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (304)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEE----EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCCcEEEEEE----eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence 46899999999999999876 667788888888665555 557789999999999999999999999888875
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-C
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~ 173 (430)
. +.|.++.+.+... .+++++.|+.+++|++.... .....+ ..|...|.+++|+| +
T Consensus 97 ~--------~~v~~~~~~~~~~--------~l~sgs~D~~v~lWd~~~~~-------~~~~~~-~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 97 P--------DYIRSIAVHPTKP--------YVLSGSDDLTVKLWNWENNW-------ALEQTF-EGHEHFVMCVAFNPKD 152 (304)
T ss_dssp S--------SCEEEEEECSSSS--------EEEEEETTSCEEEEEGGGTT-------EEEEEE-CCCCSCEEEEEECTTC
T ss_pred C--------CcEEEEEEcCCCC--------EEEEECCCCeEEEEECCCCc-------chhhhh-cccCCcEEEEEECCCC
Confidence 5 6889999877544 89999999999999986432 122233 35778999999999 6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
+.+|++|+.|++|++||+.++.....+..+. ...+..+.|.+.+++.+|++++.|+.|++||+++++ ++..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~ 223 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT 223 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-ccee
Confidence 7899999999999999998877665554322 245888899666688999999999999999999865 5889
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCC
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIK 331 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~d~~v~iwd~~ 331 (430)
+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+..| ...+++++|+|++. ++++|+.|| +.+|++.
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 9999999999999999999999999999999999999999999987 88999999999885 577776555 7788775
Q ss_pred C
Q 014114 332 T 332 (430)
Q Consensus 332 ~ 332 (430)
+
T Consensus 302 ~ 302 (304)
T 2ynn_A 302 N 302 (304)
T ss_dssp -
T ss_pred c
Confidence 4
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-39 Score=289.25 Aligned_cols=302 Identities=10% Similarity=0.062 Sum_probs=226.7
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCcc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
+++..+.+|...+..++++. + +|++|+.||.|+|||+..+. .+..+.. ..+...|.++.+.+...
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~----~--~las~~~D~~i~lw~~~~~~~~~~~~~~~------~~h~~~v~~v~~sp~~~- 71 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQ----G--ILATGSTDRKIKLVSVKYDDFTLIDVLDE------TAHKKAIRSVAWRPHTS- 71 (330)
T ss_dssp EEEEEEECCSSCEEEEEEET----T--EEEEEESSSCEEEEECSSSCCEEEEEECT------TCCCSCEEEEEECTTSS-
T ss_pred ccceeeccCCCceeeeccCC----C--EEEEEcCCCEEEEEEecCCCeEEEEEEec------CCccCCEEEEEECCCCC-
Confidence 44667888999876666643 3 89999999999999997653 3333311 12456899999877444
Q ss_pred ccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC---
Q 014114 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--- 194 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--- 194 (430)
.|++++.|+.+++|++....... .....+..+. .|...|.+++|+|++++|++|+.|++|++||+...
T Consensus 72 -------~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 72 -------LLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp -------EEEEEETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred -------EEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 89999999999999985322100 0011233333 57789999999999999999999999999999432
Q ss_pred -ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC-cceEEeeecCCCeEEEEeeCC--C
Q 014114 195 -EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--S 270 (430)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~s~~--~ 270 (430)
+++..+..|. ..|.+++| +|++.+|++++.|++|++||+..+. .++..+.+|...|.+++|+|+ +
T Consensus 143 ~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 143 YECISVLQEHS---------QDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp CEEEEEECCCS---------SCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred eEEEEEeccCC---------CceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence 4556666664 67999999 8999999999999999999987642 357788899999999999998 6
Q ss_pred CEEEEEcCCCCEEEEEccCC--------eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEEe
Q 014114 271 FNIYIGNGSGDLASVDIRTG--------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL--LSAVF 340 (430)
Q Consensus 271 ~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~ 340 (430)
.+|++|+.|++|++||++.+ .+...+...|...|++++|++++ +|++++.||.|+|||..+++. +...
T Consensus 212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~- 289 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR- 289 (330)
T ss_dssp CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-
Confidence 78999999999999999754 44555555348999999999765 899999999999999987742 2221
Q ss_pred eccccceeEEEeeecC--Ccce-eeecCCCcEEEecCCC
Q 014114 341 LKQHLNEVVFDSAFAD--KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 341 ~~~~~~~~i~~~~~s~--~g~~-~~~~~d~~v~vw~~~~ 376 (430)
..+|....+.+++|+| ++.+ ++++.|+.|++|+...
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3456443579999999 6777 8999999999999754
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-38 Score=289.37 Aligned_cols=296 Identities=13% Similarity=0.142 Sum_probs=230.3
Q ss_pred hheecCCCCcceEEEEeccCC--CCCCceEEEEccCCeEEEeccCCCc-------eeeeeeecCCCCCCCCCCceEEEEe
Q 014114 41 VVERWGDPHSSKCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGD-------LRVAISNAGDSGAQPEDDGIVGLHL 111 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~ 111 (430)
+...+.+|...+..+++.+.. .+++++|++|+.|++|+|||+..++ ....+.+ |...|.++.+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~--------h~~~V~~~~~ 84 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG--------HNHFVSDLAL 84 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC--------CSSCEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc--------CCCceEEEEE
Confidence 456788899998888875532 2488999999999999999987543 2333444 4468888888
Q ss_pred eccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 014114 112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 191 (430)
.+... .+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++++.|+.|++||+
T Consensus 85 ~~~~~--------~l~s~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 85 SQENC--------FAISSSWDKTLRLWDLRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp CSSTT--------EEEEEETTSEEEEEETTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CCCCC--------EEEEEcCCCcEEEEECCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 76443 89999999999999986432 334443 57889999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC----------CEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----------RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
... ......... .|...|.+++| +|++ .+|++++.|+.|++||... .....+.+|...|
T Consensus 148 ~~~-~~~~~~~~~------~~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v 216 (343)
T 2xzm_R 148 LGE-CKFSSAEKE------NHSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNV 216 (343)
T ss_dssp SSC-EEEECCTTT------SCSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCE
T ss_pred cCC-ceeeeeccc------CCCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccc
Confidence 743 333222111 12367999999 6665 7899999999999999543 3467788999999
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccC-CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEe
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 340 (430)
.+++|+|++++|++|+.|+.|++||+.. ......+.. ...|.+++|+|++++++++ .|+.|++||+.+++......
T Consensus 217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence 9999999999999999999999999954 334444433 5679999999999887655 57889999998877655322
Q ss_pred ec-----------cccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 341 LK-----------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 341 ~~-----------~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+. +| ...+.+++|+|+|.+ ++++.||.|++|+...
T Consensus 294 ~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 294 IEAEPITKAEGQKGK-NPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCCSGGGBTTBCCS-CCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred eecCcchhhhhhcCC-CCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 32 34 344799999999999 9999999999998643
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-38 Score=293.42 Aligned_cols=314 Identities=19% Similarity=0.150 Sum_probs=243.6
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCC---
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA--- 99 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 99 (430)
+....+|+..........+...+ +|...+.++++ +|+|++|++|+ ++.++||++.+++.+..+..+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~f----spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 39 NDYYILYNPALPREIDVELHKSL-DHTSVVCCVKF----SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 112 (393)
T ss_dssp SSCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEE----CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred CceEEEECCCCCcccCceeEEec-CCCCEEEEEEE----CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccc
Confidence 34455776654211111112223 47777666555 66888999986 78999999999998877765431110
Q ss_pred -------CCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 100 -------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 100 -------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
..+...|.++.+.+.. ..+++++.|+.+++|++.... .+..+. .|...|.+++|+|
T Consensus 113 ~~~~~~~~~~~~~v~~v~~s~dg--------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~p 175 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCFSPDG--------KFLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYFP 175 (393)
T ss_dssp --------CCCCBEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECT
T ss_pred cccccccCCCceeEEEEEECCCC--------CEEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEcC
Confidence 0122347788886644 489999999999999986422 333333 5788999999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcce
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
++++|++++.|++|++||+.+++....+..+ ..+.+++| +| ++++|++++.|+.|++||++++.. +
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~~-~ 242 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGFL-V 242 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCCE-E
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEEcC----------CCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCcE-E
Confidence 9999999999999999999999887776543 55889999 66 899999999999999999998653 4
Q ss_pred EEe-------eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC------------eEEeEEeccccCcEEEEEEcCC
Q 014114 252 MSF-------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 252 ~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
..+ .+|...|.+++|+|++++|++|+.|+.|++||+++. .+...+.+| ...|.+++|+|+
T Consensus 243 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~ 321 (393)
T 1erj_A 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQN 321 (393)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGG
T ss_pred EeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCC
Confidence 444 568899999999999999999999999999999753 345677787 889999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC------Ccce-eeecCCCcEEEecCCC
Q 014114 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD------KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~------~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+.+|++++.|+.|++||+.+++++.. +.+|... |.+++|++ ++.+ ++++.|+.|++|+...
T Consensus 322 ~~~l~sgs~D~~v~iwd~~~~~~~~~--l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 322 DEYILSGSKDRGVLFWDKKSGNPLLM--LQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp GCEEEEEETTSEEEEEETTTCCEEEE--EECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEE--ECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999999999999999999887 6778554 68999876 6777 9999999999998754
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-39 Score=299.72 Aligned_cols=314 Identities=10% Similarity=0.068 Sum_probs=253.8
Q ss_pred ceEeecCCCcEEEEEe----cCccC-----CcchhheecCC------CCcceEEEEeccCCCCCCceEEEEccCCeEEEe
Q 014114 16 RALTFDSLGLIKVIEA----RGEDG-----GVPKVVERWGD------PHSSKCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~----~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw 80 (430)
.|++|+.||.|++|++ .++.. ....+...+.. |... +.+++| +|++++|++|+.||.|++|
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~--s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQ--VTCLAW--SHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBC--EEEEEE--CTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCc--eEEEEE--cCCCCEEEEEeCCCeEEEE
Confidence 6899999999999999 65410 01111122222 4556 445555 6688999999999999999
Q ss_pred ccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec
Q 014114 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
| .+++.+..+..|. ..+.++.+.+... .+++++.++.+.+|++.... .+..+...
T Consensus 136 ~-~~~~~~~~~~~~~--------~~v~~~~~~~~~~--------~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~ 190 (425)
T 1r5m_A 136 N-KTGALLNVLNFHR--------APIVSVKWNKDGT--------HIISMDVENVTILWNVISGT--------VMQHFELK 190 (425)
T ss_dssp E-TTSCEEEEECCCC--------SCEEEEEECTTSS--------EEEEEETTCCEEEEETTTTE--------EEEEECCC
T ss_pred e-CCCCeeeeccCCC--------ccEEEEEECCCCC--------EEEEEecCCeEEEEECCCCc--------EEEEeecc
Confidence 9 5778777776543 6888898876444 89999999999999986432 22222221
Q ss_pred c--------------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC
Q 014114 161 A--------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD 226 (430)
Q Consensus 161 ~--------------~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 226 (430)
. ...+.+++|+|++ .+++++.++.|++||+.+++.+..+..+. ..|.+++| +|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~ 258 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH---------GPISVLEF--NDT 258 (425)
T ss_dssp ---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS---------SCEEEEEE--ETT
T ss_pred ccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC---------CceEEEEE--CCC
Confidence 1 1128889999875 57889999999999999998888877654 67999999 789
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEE
Q 014114 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 227 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~ 306 (430)
+++|++++.|+.|++||++.++ ++..+..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+..| ...|.+
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~ 335 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFA 335 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEE
Confidence 9999999999999999999855 478888899999999999999 9999999999999999999999999988 899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------------eeeEEeeccccce-eEEEeeecCCcce-eeec
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIKTRQ--------------------LLSAVFLKQHLNE-VVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~~~~--------------------~~~~~~~~~~~~~-~i~~~~~s~~g~~-~~~~ 364 (430)
++|+|++++|++++.||.|++||+.+++ .+.. +.+|... .|.+++|+|++.+ ++++
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS--YQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE--ECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh--hcCcccCCceEEEEccCCCceEEEEe
Confidence 9999999999999999999999999888 6666 5666443 5799999999999 8999
Q ss_pred CCCcEEEecCC
Q 014114 365 DAPMLEIQNGN 375 (430)
Q Consensus 365 ~d~~v~vw~~~ 375 (430)
.|+.|++|+..
T Consensus 414 ~dg~i~iw~~~ 424 (425)
T 1r5m_A 414 SLQEGSVVAIP 424 (425)
T ss_dssp SSSCCEEEECC
T ss_pred cCceEEEEeec
Confidence 99999999975
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-38 Score=284.67 Aligned_cols=275 Identities=10% Similarity=0.113 Sum_probs=227.2
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||+|++|++..........+..+.+|...+..+++ +|+|++|++|+.|++|+|||+.+++.+..+.+|
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~----s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h 106 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL----TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEE----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEE----CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC
Confidence 4689999999999999975322222345678889988655555 567889999999999999999999998888775
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
. ..|.++.+.+... .+++++.|+.+++|++.. ..+..+. .|...|.++.|+|.
T Consensus 107 ~--------~~v~~~~~~~~~~--------~l~s~s~D~~i~vwd~~~---------~~~~~~~-~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 107 K--------SDVMSVDIDKKAS--------MIISGSRDKTIKVWTIKG---------QCLATLL-GHNDWVSQVRVVPNE 160 (319)
T ss_dssp S--------SCEEEEEECTTSC--------EEEEEETTSCEEEEETTS---------CEEEEEC-CCSSCEEEEEECCC-
T ss_pred C--------CcEEEEEEcCCCC--------EEEEEeCCCeEEEEECCC---------CeEEEEe-ccCCcEEEEEEccCC
Confidence 5 6788888876444 899999999999999752 2233332 57788999999984
Q ss_pred -----CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC
Q 014114 174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 174 -----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 248 (430)
+.+|++++.|+.|++||+.+.+....+..|. ..|.+++| +|++++|++++.|+.|++||+.+++
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~--sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4489999999999999999998888887765 67999999 8999999999999999999999855
Q ss_pred cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc-------ccCcEEEEEEcCCCCEEEEEeC
Q 014114 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
++..+.. ...|.+++|+|++.+|++++.++ +++|++.....+..+..+ +...+.+++|+|+|++|++|+.
T Consensus 230 -~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 230 -AMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp -EEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred -EEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 4666665 46899999999999999887654 999999887777666432 2567999999999999999999
Q ss_pred CCeEEEEeCCCC
Q 014114 322 DSYLRFWDIKTR 333 (430)
Q Consensus 322 d~~v~iwd~~~~ 333 (430)
|+.|+|||+.++
T Consensus 307 Dg~i~vWd~~t~ 318 (319)
T 3frx_A 307 DNVIRVWQVMTA 318 (319)
T ss_dssp TSCEEEEEEEEC
T ss_pred CceEEEEEEeec
Confidence 999999998764
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-38 Score=288.71 Aligned_cols=268 Identities=14% Similarity=0.198 Sum_probs=223.5
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc------ee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~------~~ 88 (430)
.+|+||+.||.|+|||..++ +....+..|...+. ++.| +|+|.+|++|+.|+.|++|++.... ..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~~v~--~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCTWVM--ACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-----CEEEEEECSSSCCC--EEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CcceEEecCCCCEE--EEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 57999999999999998875 45556666766644 4455 6788999999999999999986432 23
Q ss_pred eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEE
Q 014114 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..+..| ...+.++.+.+... .+++++.|+.+++|++.... .+..+. .|...|.++
T Consensus 148 ~~~~~h--------~~~v~~~~~~~~~~--------~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~ 202 (354)
T 2pbi_B 148 KSVAMH--------TNYLSACSFTNSDM--------QILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL 202 (354)
T ss_dssp EEEEEC--------SSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred eeeecc--------CCcEEEEEEeCCCC--------EEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence 334443 36788888876444 89999999999999986432 444444 577889999
Q ss_pred EEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 169 KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 169 ~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+|+| ++++|++|+.|+.|++||+.+++++..+..|. ..|.+++| +|++.+|++++.|++|++||++.
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRY--YPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEE--eCCCCEEEEEeCCCeEEEEECCC
Confidence 9987 56899999999999999999999998888765 67999999 89999999999999999999998
Q ss_pred CCcceEEeeec--CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCe
Q 014114 247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~ 324 (430)
.+. +..+..+ ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| ...|++++|+|++++|++|+.|+.
T Consensus 272 ~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 272 DRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp TEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred CcE-EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence 543 4444433 347899999999999999999999999999999999999998 999999999999999999999999
Q ss_pred EEEEe
Q 014114 325 LRFWD 329 (430)
Q Consensus 325 v~iwd 329 (430)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 27
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.1e-39 Score=300.02 Aligned_cols=323 Identities=11% Similarity=0.099 Sum_probs=252.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.++++|+.||.|++||+.+. .....+..+ ... . ...+ +|++++|++|+.||.|+|||+.+++....+..|
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~-~~~-~-~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIR-----DGSKMLKRA-DYT-A-VDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TTEEEEEETTEEEEEECCSE-----ETTTTSCSC-CEE-E-EEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred CeEEEEEcCCcEEEEEeccc-----ceeeEEecC-Cce-E-EEEE--ecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 46899999999999999875 444444444 222 2 2234 678889999999999999999888877666554
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..|.++.+.+... .+++++.|+.+++|++.... .+..+. .|...|.+++|+|++
T Consensus 139 ~--------~~v~~~~~~~~~~--------~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 139 V--------SEITKLKFFPSGE--------ALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRG 193 (420)
T ss_dssp S--------SCEEEEEECTTSS--------EEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTT
T ss_pred c--------CccEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCC
Confidence 3 6899999877444 99999999999999986432 333443 578899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCc---------------ccCcceeEeEEeeCCCCCEEEEEeCCCcE
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI---------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 239 (430)
++|++++.|+.|++||+.+++.+..+..+......+ .+...+.+++| +|++++|++++.||.|
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF--GTYGKYVIAGHVSGVI 271 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS--SCTTEEEEEEETTSCE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE--cCCCCEEEEEcCCCeE
Confidence 999999999999999999999988887543221110 11244556666 7899999999999999
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCCe-EEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
++||+++++........|...|.+++|+|++. +|++|+.||.|++||+++++ ++..+..|+...|.++.+ +++.+|+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~ 350 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV 350 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence 99999987754444456888999999999998 99999999999999999875 477888866888999866 5778999
Q ss_pred EEeCCCeEEEEeCCCCceeeEE-------eeccccceeEEEeeecCCcc----eeeecCCCcEEEecCCC
Q 014114 318 SCGLDSYLRFWDIKTRQLLSAV-------FLKQHLNEVVFDSAFADKEV----ANAAADAPMLEIQNGND 376 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~~~~i~~~~~s~~g~----~~~~~~d~~v~vw~~~~ 376 (430)
+++.|+.|++|++........+ .+.++ ...+.+++|+|++. +++++.+|.+.+|+...
T Consensus 351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EecCCccEEEEeccCCCCCccceeccCccEEccC-CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999999998774221110 13344 34469999999999 48888999999998754
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=288.49 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=214.7
Q ss_pred CCcceEeecCCCcEEEEEecCcc------CCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc
Q 014114 13 PPLRALTFDSLGLIKVIEARGED------GGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
|..++++++.|+++++||..... ............+...+..++++ |+ ..|++|+.||+|+|||+.+++
T Consensus 40 ~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~d-~~l~~~s~dg~v~lWd~~~~~ 114 (344)
T 4gqb_B 40 SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV----GE-RGILVASDSGAVELWELDENE 114 (344)
T ss_dssp TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE----TT-TEEEEEETTSEEEEEEECTTS
T ss_pred CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe----CC-CeEEEEECCCEEEEEeccCCC
Confidence 44566667778899999754210 00001111112234555555554 44 358899999999999999988
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.+..+.... .+|.+.|.++.+.+... .|++++.|+.+++|++.... .++.+. .|...|.
T Consensus 115 ~~~~~~~~~----~~H~~~V~~v~~spdg~--------~l~sgs~d~~i~iwd~~~~~--------~~~~~~-~h~~~V~ 173 (344)
T 4gqb_B 115 TLIVSKFCK----YEHDDIVSTVSVLSSGT--------QAVSGSKDICIKVWDLAQQV--------VLSSYR-AHAAQVT 173 (344)
T ss_dssp SCEEEEEEE----ECCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEE
T ss_pred ceeEeeccc----cCCCCCEEEEEECCCCC--------EEEEEeCCCeEEEEECCCCc--------EEEEEc-CcCCceE
Confidence 765544210 13447899999877444 99999999999999986432 344444 5788999
Q ss_pred EEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEEC
Q 014114 167 FSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 167 ~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~ 244 (430)
+++|+|++ .+|++++.|++|++||+.+++.+..+..... ...+.+++| +| ++++|++|+.|+.|++||+
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~--~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP-------GYLPTSLAW--HPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------CCCEEEEEE--CSSCTTEEEEEETTSEEEEEES
T ss_pred EEEecCCCCCceeeeccccccccccccccceeeeeeccee-------eccceeeee--cCCCCcceEEeccCCcEEEEEC
Confidence 99999987 5789999999999999999988877654321 245889999 55 5678999999999999999
Q ss_pred CCCCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC-EEEEEeCC
Q 014114 245 SAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLD 322 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d 322 (430)
++++ ++..+.+|...|++++|+|++ ++|++|+.|+.|+|||+++++++ .+.+| ...|++++|+|+++ +|++++.|
T Consensus 245 ~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 245 KSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp CC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCC-SSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCC
Confidence 9866 588999999999999999998 57999999999999999988765 56787 89999999999986 57799999
Q ss_pred CeEEEEeCCCCce
Q 014114 323 SYLRFWDIKTRQL 335 (430)
Q Consensus 323 ~~v~iwd~~~~~~ 335 (430)
++|++|++.+...
T Consensus 322 ~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 322 HQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEECCC---
T ss_pred CeEEEEECCCCCC
Confidence 9999999976543
No 29
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.7e-37 Score=289.50 Aligned_cols=305 Identities=14% Similarity=0.197 Sum_probs=259.0
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
...+++|+.||.|++||+.++ +.+..+.+|...+..+++. +++|++|+.||.|++||+.+++.+..+..
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR------DNIIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEECCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEec------CCEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 357899999999999999876 6778888999987666654 35899999999999999999998888876
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
|. ..+.++.+.. ..+++++.||.+.+|++.... .+..+. .|...|.++++ +
T Consensus 198 h~--------~~v~~~~~~~----------~~l~s~s~dg~i~~wd~~~~~--------~~~~~~-~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 198 HT--------STVRCMHLHE----------KRVVSGSRDATLRVWDIETGQ--------CLHVLM-GHVAAVRCVQY--D 248 (445)
T ss_dssp CS--------SCEEEEEEET----------TEEEEEETTSEEEEEESSSCC--------EEEEEE-CCSSCEEEEEE--C
T ss_pred CC--------CcEEEEEecC----------CEEEEEeCCCEEEEEECCCCc--------EEEEEc-CCcccEEEEEE--C
Confidence 54 5788887732 389999999999999986432 333333 46788999999 6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
++++++|+.||.|++||+.+++.+..+..+. ..|.++.| ++.++++++.|+.|++||+++++ .+..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~-~~~~ 314 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETGN-CIHT 314 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCCC-EEEE
Confidence 7899999999999999999999998888765 66899988 78899999999999999999866 4788
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec---cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+..|...+.++.++ +++|++|+.||.|++||+++++.+..+.. | ...|++++|+ +.+|++++.||.|++||+
T Consensus 315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 88999999998875 56999999999999999999999999986 5 8899999995 679999999999999999
Q ss_pred CCCceeeEEee--ccccceeEEEeeecCCcce-eeecCCCc----EEEecCCCC
Q 014114 331 KTRQLLSAVFL--KQHLNEVVFDSAFADKEVA-NAAADAPM----LEIQNGNDT 377 (430)
Q Consensus 331 ~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~-~~~~~d~~----v~vw~~~~~ 377 (430)
.+++.+..+.. .......+++++|+|++.+ ++++.||. |.|||....
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999887521 1233556899999999999 89999997 999998763
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.8e-39 Score=296.41 Aligned_cols=276 Identities=13% Similarity=0.170 Sum_probs=223.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCce-------
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------- 87 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~------- 87 (430)
..|++|+.||.|+|||+.++ +....+..|...+.. ++| +|+|++|++|+.|+.|+|||+.+...
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~v~~--~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPWVME--CAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTTCCC--CEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCCEEE--EEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence 46899999999999999875 566778888887544 445 67889999999999999999865321
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe----eccCC
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASG 163 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~----~~~~~ 163 (430)
...+. ++...+.++.+.+.. ...+++++.|+.+++|++.... .+..+. ..|..
T Consensus 150 ~~~~~--------gh~~~v~~~~~~~~~-------~~~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 150 SRVLT--------GHKGYASSCQYVPDQ-------ETRLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTA 206 (380)
T ss_dssp CCBCC--------CCSSCCCCCBCCSSS-------SSCEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCS
T ss_pred eeecc--------CCCcceEEEEEecCC-------CCEEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCcc
Confidence 12222 344566666665532 2379999999999999986533 233332 34678
Q ss_pred ceEEEEEcC-CCCEEEEecCCCeEEEEECC-CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
.|.+++|++ ++++|++|+.|+.|++||++ ....+..+..|. ..|.+++| +|++++|++++.|++|++
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKF--FPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEE--CTTSSEEEEECSSSCEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEE--ecCCCeEEEEcCCCeEEE
Confidence 899999987 88999999999999999997 456677777765 67999999 899999999999999999
Q ss_pred EECCCCCcceEEeeecC-------CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE----eccccCcEEEEEEc
Q 014114 242 YDTSAQRRPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARH 310 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~v~~i~~s 310 (430)
||+++++. +..+..+. ..|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+| ...|++++|+
T Consensus 276 wd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s 353 (380)
T 3iz6_a 276 FDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLS 353 (380)
T ss_dssp EETTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEEC
T ss_pred EECCCCcE-EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEEC
Confidence 99998653 55555432 24899999999999999999999999999999888777 456 8999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 311 PTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 311 ~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
|++.+|++|+.|++|+||++...+.
T Consensus 354 ~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 354 SDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SSSSEEEEECTTSCEEEEECCSSSS
T ss_pred CCCCEEEEeeCCCCEEEEecCCCcc
Confidence 9999999999999999999986543
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=282.52 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=216.3
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~ 92 (430)
..|++|+.||.|+|||+.++. .........+|...+..++ | +|+|++|++|+.|+.|+||++..+. ++..+.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~--~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRTVRKVA--W--SPCGNYLASASFDATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTE--EEEEEEECSSCSSCEEEEE--E--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred CEEEEEcCCCeEEEEEcCCCc--ceeeeeeccccCCcEEEEE--E--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence 468999999999999998740 0001122356887755544 4 6688899999999999999987664 345555
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+| ...|.++.|.+... .|++++.|+.+++|++...... ..+..+. .|...|.+++|+|
T Consensus 103 ~h--------~~~v~~v~~sp~~~--------~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~-~h~~~v~~~~~~p 160 (345)
T 3fm0_A 103 GH--------ENEVKSVAWAPSGN--------LLATCSRDKSVWVWEVDEEDEY-----ECVSVLN-SHTQDVKHVVWHP 160 (345)
T ss_dssp CC--------SSCEEEEEECTTSS--------EEEEEETTSCEEEEEECTTSCE-----EEEEEEC-CCCSCEEEEEECS
T ss_pred CC--------CCCceEEEEeCCCC--------EEEEEECCCeEEEEECCCCCCe-----EEEEEec-CcCCCeEEEEECC
Confidence 54 36899999877444 9999999999999998643211 1233333 5678899999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCc--eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC--
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-- 248 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-- 248 (430)
++++|++++.|+.|++||+.++. +...+..|. ..|.+++| +|++++|++++.|++|++||.....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~--sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAF--DPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEE--CCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999999999999998775 345666664 67999999 8999999999999999999974321
Q ss_pred ------------cceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--------EEe-EEeccccCcEEE
Q 014114 249 ------------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------LLG-CFIGKCSGSIRS 306 (430)
Q Consensus 249 ------------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--------~~~-~~~~~~~~~v~~ 306 (430)
..+..+.+ |...|.+++|+|++..|++++.|+.|++|+..... ... ...+| ...|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 308 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNC 308 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeE
Confidence 11233333 78899999999999999999999999999987542 111 22355 899999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 307 IARHPTL-PIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 307 i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
++|+|++ .+|++|+.||.|++|++.+++.+..
T Consensus 309 v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 309 VAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 9999998 4999999999999999998877654
No 32
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-37 Score=285.51 Aligned_cols=283 Identities=17% Similarity=0.198 Sum_probs=224.6
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCC----------------cceEEEEeccCCCCCCceEEEEccCCe
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPH----------------SSKCVLAASIDDSQNDPLLAVARKNGL 76 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~p~g~~l~~g~~dg~ 76 (430)
|..++++.+.++.++||++.++ ..+..+..+. ....+.+++| +|+|++|++|+.||.
T Consensus 74 pdg~~la~g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 74 NDGEYLATGCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRL 146 (393)
T ss_dssp TTSSEEEEECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSSEEEEEETTSC
T ss_pred CCCCEEEEEcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCEEEEEcCCCe
Confidence 3444455556899999999875 4444444332 1123556667 789999999999999
Q ss_pred EEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeE
Q 014114 77 TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS 156 (430)
Q Consensus 77 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~ 156 (430)
|+|||+.+++.+..+.+|. ..|.++.+.+... .+++++.|+.+++|++.... .+.
T Consensus 147 i~iwd~~~~~~~~~~~~h~--------~~v~~~~~~p~~~--------~l~s~s~d~~v~iwd~~~~~--------~~~- 201 (393)
T 1erj_A 147 IRIWDIENRKIVMILQGHE--------QDIYSLDYFPSGD--------KLVSGSGDRTVRIWDLRTGQ--------CSL- 201 (393)
T ss_dssp EEEEETTTTEEEEEECCCS--------SCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTE--------EEE-
T ss_pred EEEEECCCCcEEEEEccCC--------CCEEEEEEcCCCC--------EEEEecCCCcEEEEECCCCe--------eEE-
Confidence 9999999998888887654 6788999877444 89999999999999986432 222
Q ss_pred EeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC
Q 014114 157 WNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 235 (430)
...+...+.+++|+| ++.+|++|+.|+.|++||+.++..+..+...... ...|...|.+++| +|++++|++++.
T Consensus 202 -~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~--~~~g~~l~s~s~ 276 (393)
T 1erj_A 202 -TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVF--TRDGQSVVSGSL 276 (393)
T ss_dssp -EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CTTSSEEEEEET
T ss_pred -EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC--CCCCCCCEEEEEE--CCCCCEEEEEeC
Confidence 223567899999999 8999999999999999999999887766432110 1123477999999 899999999999
Q ss_pred CCcEEEEECCCCC-----------cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcE
Q 014114 236 DHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 236 dg~i~~wd~~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v 304 (430)
|+.|++||++... .....+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+| ...|
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v 355 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSV 355 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCE
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCE
Confidence 9999999997532 124567789999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEcC------CCCEEEEEeCCCeEEEEeCCCC
Q 014114 305 RSIARHP------TLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 305 ~~i~~s~------~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
.+++|++ ++.+|++|+.||+|+||++...
T Consensus 356 ~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999986 6789999999999999998643
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-37 Score=279.55 Aligned_cols=277 Identities=12% Similarity=0.087 Sum_probs=219.1
Q ss_pred cceEeecCCCcEEEEEecCccCC--cchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGG--VPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..|+||+.||+|++||+...... .......+.+|...+..+++ +|++.+|++|+.|++|+|||+.+++.+..+.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~----~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 115 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL----SQENCFAISSSWDKTLRLWDLRTGTTYKRFV 115 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE----CSSTTEEEEEETTSEEEEEETTSSCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE----CCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 46899999999999999753211 11334567889888655555 5678899999999999999999999988887
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEE-eeccCCceEEEEEc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~ 171 (430)
+|. ..|.++.+.+... .+++++.|+.+++|++..... .... ...|...|.+++|+
T Consensus 116 ~h~--------~~v~~v~~sp~~~--------~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 116 GHQ--------SEVYSVAFSPDNR--------QILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp CCC--------SCEEEEEECSSTT--------EEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEEC
T ss_pred CCC--------CcEEEEEECCCCC--------EEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeec
Confidence 754 6888898877444 899999999999999852111 0000 11466789999999
Q ss_pred CCC----------CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 172 ISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 172 ~~~----------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
|++ .+|++++.|+.|++||. ..+....+..|. ..|.+++| +|++++|++++.|+.|++
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~--s~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSI--SPNGKYIATGGKDKKLLI 239 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTCEEEE
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEE--CCCCCEEEEEcCCCeEEE
Confidence 976 79999999999999994 556666666664 67999999 899999999999999999
Q ss_pred EECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEe--EEe-----------ccccCcEEEEE
Q 014114 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRSIA 308 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~-----------~~~~~~v~~i~ 308 (430)
||+.....+...+. +...|.+++|+|++.+++++ .|+.|++||+.+++... .+. +| ...|++++
T Consensus 240 wd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 316 (343)
T 2xzm_R 240 WDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSLA 316 (343)
T ss_dssp EESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEEE
T ss_pred EECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEEE
Confidence 99965444444443 45679999999999877655 67789999998776543 333 44 77899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCc
Q 014114 309 RHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 309 ~s~~~~~l~s~~~d~~v~iwd~~~~~ 334 (430)
|+|++++|++|+.||.|++|++.++.
T Consensus 317 ~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 317 WNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred ECCCCCeEEEecCCceEEEEEEEccC
Confidence 99999999999999999999987653
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-36 Score=275.30 Aligned_cols=314 Identities=11% Similarity=0.100 Sum_probs=236.6
Q ss_pred eecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCC-CceEEEEccCCeEEEeccCCCce-----eeeee
Q 014114 19 TFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDL-----RVAIS 92 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~-----~~~~~ 92 (430)
+|...|+..+|-... ......+..++.+|.+.|..++++ |+ +++|++|+.||+|+|||+.+++. ...+.
T Consensus 9 ~g~d~g~~~~~~~~~-~~~~~~l~~tL~GH~~~V~~v~~s----p~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~ 83 (340)
T 4aow_A 9 SGVDLGTENLYFQSM-MTEQMTLRGTLKGHNGWVTQIATT----PQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 83 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEEC----TTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC
T ss_pred cccCCCCccEEEEEc-cCCceEEEEEECCccCCEEEEEEe----CCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe
Confidence 344445544442221 112224566899999997777665 44 57999999999999999976543 23333
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+ +...|.++.+.+... .+++++.|+.+.+|+..... .......+...+..+.+++
T Consensus 84 ~--------h~~~V~~~~~s~dg~--------~l~s~~~d~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 138 (340)
T 4aow_A 84 G--------HSHFVSDVVISSDGQ--------FALSGSWDGTLRLWDLTTGT---------TTRRFVGHTKDVLSVAFSS 138 (340)
T ss_dssp C--------CSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECT
T ss_pred C--------CCCCEEEEEECCCCC--------EEEEEcccccceEEeecccc---------eeeeecCCCCceeEEEEee
Confidence 3 446899998876444 99999999999999875432 2222334567788899999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeee-ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
++++|++++.|+.+++||+........ ...+ ...+..++|.+.+...++++++.|+.|++||+++++ .+
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~ 208 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH---------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LK 208 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSSSC---------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EE
T ss_pred cCccceeecCCCeEEEEEeCCCceEEEEeccc---------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-ee
Confidence 999999999999999999976554332 3333 266889999544556788999999999999999865 57
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..+.+|..+|++++|+|++++|++|+.|+.|++||+++.+.+..+..+ ..|.++.|+|++.+ ++++.|+.|++||++
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYW-LCAATGPSIKIWDLE 285 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSE-EEEEETTEEEEEETT
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCce-eeccCCCEEEEEECC
Confidence 888999999999999999999999999999999999999999988874 68999999998865 456679999999999
Q ss_pred CCceeeEEe-------eccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 332 TRQLLSAVF-------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 332 ~~~~~~~~~-------~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
++..+..+. ..+| ...|++++|+|+|++ ++++.||.|+||+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp TTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 888776642 1234 344799999999999 9999999999999764
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.7e-37 Score=276.48 Aligned_cols=310 Identities=11% Similarity=0.065 Sum_probs=244.2
Q ss_pred EeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCC
Q 014114 18 LTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 18 ~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
+++..++.+.+|..... .......+|...+..+++ +|++++|++++ ||.|++||+.+++....+....
T Consensus 25 ~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~-- 92 (337)
T 1gxr_A 25 PVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTI----SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-- 92 (337)
T ss_dssp ECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEE----CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--
T ss_pred EeecCCCcEeccccCCc-----cccceeccCCCceEEEEE----ecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc--
Confidence 34444555555543331 122233357777655555 56788999998 9999999998776443333211
Q ss_pred CCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEE
Q 014114 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
...+...+.++.+.+... .+++++.+|.+.+|++..... ........+...|.+++|+|++++|
T Consensus 93 -~~~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 93 -CLNRDNYIRSCKLLPDGC--------TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp -CSCTTSBEEEEEECTTSS--------EEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred -ccCCCCcEEEEEEcCCCC--------EEEEEcCCCcEEEEECCCCCc-------ceeeecccCCCceEEEEECCCCCEE
Confidence 012446888898877444 899999999999999865321 1222223467889999999999999
Q ss_pred EEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec
Q 014114 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR 257 (430)
Q Consensus 178 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 257 (430)
++++.|+.|++||+.+++.+..+..+. ..+.+++| +|++++|++++.|+.|++||+++++. +..+ .+
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~~ 223 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGRQ-LQQH-DF 223 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEE-EEEE-EC
T ss_pred EEEeCCCcEEEEeCCCCceeeeeeccc---------CceEEEEE--CCCCCEEEEEecCCcEEEEECCCCce-Eeee-cC
Confidence 999999999999999999988887764 67999999 89999999999999999999998653 4444 46
Q ss_pred CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 258 ~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
...+.+++|+|++++|++++.++.|++||+++++.. .+..| ...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 789999999999999999999999999999887654 56676 8999999999999999999999999999999998875
Q ss_pred EEeeccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
.. .+ ...+.+++|+|++.+ ++++.|+.|++|+.
T Consensus 302 ~~---~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 302 QS---KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE---EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred Ee---cC-CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 42 23 344799999999999 99999999999985
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-37 Score=279.68 Aligned_cols=300 Identities=13% Similarity=0.156 Sum_probs=247.4
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.....+.+|...+..+++ +|++++|++|+.||.|+|||+.+++.+..+..|. ..|.++.+.+...
T Consensus 23 ~~~~~l~~h~~~v~~~~~----s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~--- 87 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKY----NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--------GTIWSIDVDCFTK--- 87 (369)
T ss_dssp EEEEEEECCSSCEEEEEE----CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS--------SCEEEEEECTTSS---
T ss_pred cccEEEEEeeceEEEEEE----cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--------CcEEEEEEcCCCC---
Confidence 334567788888555554 5678899999999999999999999988887654 6888898876444
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC-----CeEEEEECCCC
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKC 194 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 194 (430)
.+++++.||.+.+|++.... .+..+. +...|.+++|+|++++|++++.+ +.|++||+...
T Consensus 88 -----~l~s~~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 88 -----YCVTGSADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp -----EEEEEETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred -----EEEEEeCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 89999999999999986432 344444 67899999999999999999998 99999999765
Q ss_pred ceeeeecCCCCCCC--CcccC--cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC
Q 014114 195 EKIWTAKPPPKNSL--GIFTP--TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 195 ~~~~~~~~~~~~~~--~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 270 (430)
.....+........ ...+. ..+.+++| +|++++|++++.||.|++||+++...++..+..|...|.+++|+|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ccceeecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 43222111110000 00011 27999999 88999999999999999999998555688889999999999999999
Q ss_pred CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC--------------eEEEEeCCCCcee
Q 014114 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--------------YLRFWDIKTRQLL 336 (430)
Q Consensus 271 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~--------------~v~iwd~~~~~~~ 336 (430)
++|++++.|+.|++||+++++.+..+.. ...+.+++|+|+++++++++.++ .+++||+.+++.+
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999999999999999999988883 78999999999999999999888 8999999999998
Q ss_pred eEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.. +.+|.. .|.+++|+|++.+ ++++.|+.|++|+...
T Consensus 309 ~~--~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 309 GR--VQGHFG-PLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EE--EECCSS-CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred hh--eecccC-cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 87 566744 4699999999999 9999999999999875
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-37 Score=284.28 Aligned_cols=282 Identities=14% Similarity=0.111 Sum_probs=210.2
Q ss_pred cceEeecC------CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee
Q 014114 15 LRALTFDS------LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 15 ~~l~t~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
..|++|+. ||.|++|+...+.. ...+.....+|...+..++++ |++. +++++.||+|+|||+.+++..
T Consensus 55 ~~las~s~d~~~~wd~~v~~~~~~~~~~-~~~~~~~~~~~~~~V~~~~~s----~d~~-~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 55 ALLLAASSLSSRTWGGSIWVFKDPEGAP-NESLCTAGVQTEAGVTDVAWV----SEKG-ILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp CEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEEEECSSCEEEEEEE----TTTE-EEEEETTSCEEEC--------
T ss_pred CEEEEEcCCCCccccCeEEEEECCCCCc-ceeEecccCCCCCCEEEEEEc----CCCC-EEEEECCCEEEEeecccccee
Confidence 35677776 67899998776321 112233444577776655554 4554 667788999999999887755
Q ss_pred eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEE
Q 014114 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
...... ...+.+.|.++.+.+... .|++++.|+.+++|++.... .+..+. .|...|.++
T Consensus 129 ~~~~~~----~~~h~~~V~~v~~spdg~--------~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v 187 (357)
T 4g56_B 129 LVNKFA----KYEHDDIVKTLSVFSDGT--------QAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCV 187 (357)
T ss_dssp CCCCEE----ECCCSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEE
T ss_pred EEEeec----cCCCCCCEEEEEECCCCC--------EEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEE
Confidence 433210 013457899999877444 89999999999999976432 344444 477899999
Q ss_pred EEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCC
Q 014114 169 KVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 169 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~ 246 (430)
+|+|++. ++++++.|+.|++||+.+++.+..+.... +...+.+++| +|+ +.+|++|+.|+.|++||+++
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-------~~~~v~~v~~--sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA-------SDTIPTSVTW--HPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT-------CCSCEEEEEE--CTTSTTEEEEEESSSCEEEEESSC
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeecc-------ccccccchhh--hhcccceEEEeecccceeEEECCC
Confidence 9999774 78899999999999999988766554332 1256899999 676 56899999999999999998
Q ss_pred CCcceEEeeecCCCeEEEEeeCCC-CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcC-CCCEEEEEeCCCe
Q 014114 247 QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~ 324 (430)
++ ++..+.+|...|++++|+|++ ++|++|+.|+.|+|||+++++++..+ +| ...|++|+|+| ++.+|++++.||+
T Consensus 259 ~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 259 PD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp GG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSC
T ss_pred Cc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCe
Confidence 65 588899999999999999987 57999999999999999999887654 66 89999999998 7899999999999
Q ss_pred EEEEeCCCCce
Q 014114 325 LRFWDIKTRQL 335 (430)
Q Consensus 325 v~iwd~~~~~~ 335 (430)
|++|++.+...
T Consensus 336 v~iW~~~~~~~ 346 (357)
T 4g56_B 336 VLHHHLPSEGR 346 (357)
T ss_dssp EEEEECC----
T ss_pred EEEEECCCCCc
Confidence 99999976433
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-37 Score=286.08 Aligned_cols=307 Identities=14% Similarity=0.160 Sum_probs=241.2
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc------eeeeeeecCCCCCCCCCCceEEEEeecc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
....+.+|...+..++++ | ++|++|+.||.|+|||+.+++ .+..+..|. ..|.++.+.+.
T Consensus 8 ~~~~~~~h~~~i~~~~~~----~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--------~~v~~~~~~~~ 73 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSAC----N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--------SGLHHVDVLQA 73 (397)
T ss_dssp EEEESSCSSSCEEEEEEC----S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--------TCEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEec----C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--------CcEEEEEEecc
Confidence 455677899986666664 3 689999999999999998887 566666543 68899998875
Q ss_pred CccccccCC---ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc-----CCceEEEEEc----CCCCE-EEEec
Q 014114 115 QREESSSRS---RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVD----ISEKF-SLFGG 181 (430)
Q Consensus 115 ~~~~~~~~~---~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~ 181 (430)
.. ..+ ..+++++.+|.+.+|++....... ...+..+. .+ ...|.+++|+ |++++ |++++
T Consensus 74 ~~----~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 145 (397)
T 1sq9_A 74 IE----RDAFELCLVATTSFSGDLLFYRITREDETK---KVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATD 145 (397)
T ss_dssp EE----TTTEEEEEEEEEETTSCEEEEEEEECTTTC---CEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred cc----cCCccccEEEEEcCCCCEEEEEccCCcccc---cccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEe
Confidence 00 002 389999999999999998644210 00133333 23 4889999999 99999 99999
Q ss_pred CCCeEEEEECCC------Cceee-----eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 182 KGVEVNVWDLDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 182 ~dg~v~iwd~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
.||.|++||+.+ ++.+. .+.... .....+...|.+++| +|++ +|++++.|+.|++||+++++ +
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~~-~ 219 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV--ESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLR-P 219 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEE--CCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTE-E
T ss_pred CCCcEEEEeCCccccccccceeeccCcceeeeee--ccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCCc-e
Confidence 999999999988 55554 442100 000012367999999 8899 99999999999999999855 5
Q ss_pred eEEeee---c---CCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEEec-------------cccCcEEEEE
Q 014114 251 VMSFDF---R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIRSIA 308 (430)
Q Consensus 251 ~~~~~~---~---~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~-------------~~~~~v~~i~ 308 (430)
+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++.+..+.. | ...|.+++
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 298 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLS 298 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEE
Confidence 788888 8 9999999999999999999999 9999999999999999988 7 89999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec----cc--------------cceeEEEeeecCCc----------ce
Q 014114 309 RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK----QH--------------LNEVVFDSAFADKE----------VA 360 (430)
Q Consensus 309 ~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~--------------~~~~i~~~~~s~~g----------~~ 360 (430)
|+|++++|++++.|+.|++||+.+++.+..+... +| ....|.+++|+|+| .+
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 9999999999999999999999999998885311 33 03447999999998 56
Q ss_pred -eeecCCCcEEEecCCC
Q 014114 361 -NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 -~~~~~d~~v~vw~~~~ 376 (430)
++++.|+.|++|+...
T Consensus 379 l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEETTTEEEEEEEEC
T ss_pred EEEecCCCcEEEEEcCC
Confidence 9999999999999764
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-37 Score=278.42 Aligned_cols=277 Identities=15% Similarity=0.118 Sum_probs=207.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheec-C-CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-------C
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERW-G-DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-------G 85 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-------~ 85 (430)
..|++|+.||.|++|++..+. ......+ . +|...+.. ++| +|++++|++|+.|+.|+|||+.. .
T Consensus 25 ~~las~~~D~~i~lw~~~~~~---~~~~~~~~~~~h~~~v~~--v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~~ 97 (330)
T 2hes_X 25 GILATGSTDRKIKLVSVKYDD---FTLIDVLDETAHKKAIRS--VAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFEM 97 (330)
T ss_dssp TEEEEEESSSCEEEEECSSSC---CEEEEEECTTCCCSCEEE--EEE--CTTSSEEEEEETTSCEEEEEC-------CCC
T ss_pred CEEEEEcCCCEEEEEEecCCC---eEEEEEEecCCccCCEEE--EEE--CCCCCEEEEEeCCCcEEEEEcccCcCccccc
Confidence 389999999999999998631 1223334 2 37777554 445 66788999999999999999853 2
Q ss_pred ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCce
Q 014114 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
+.+..+.+| ...|.++.|.+... +|++++.|+.+++|++..... ....+..+. .|...|
T Consensus 98 ~~~~~~~~h--------~~~V~~v~~sp~g~--------~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~v 156 (330)
T 2hes_X 98 DLLAIIEGH--------ENEVKGVAWSNDGY--------YLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQDV 156 (330)
T ss_dssp EEEEEEC------------CEEEEEECTTSC--------EEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSCE
T ss_pred eeEEEEcCC--------CCcEEEEEECCCCC--------EEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCce
Confidence 334444443 36899999877444 999999999999999842210 011233333 577899
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeecCCCCCCCCcccCcceeEeEEeeCCC--CCEEEEEeCCCcEEE
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~~ 241 (430)
.+++|+|++.+|++++.|++|++||+.++ +++..+..|. ..|.+++| +|+ +.+|++++.|++|++
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDF--DKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CCSSSSCEEEEEETTSCEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEe--cCCCCeeEEEEEeCCCeEEE
Confidence 99999999999999999999999998776 5677777765 67999999 666 678999999999999
Q ss_pred EECCCCC-------cceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--EEeEE-eccccC-cEEEEEE
Q 014114 242 YDTSAQR-------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCF-IGKCSG-SIRSIAR 309 (430)
Q Consensus 242 wd~~~~~-------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~-~~~~~~-~v~~i~~ 309 (430)
||+.... .....+.. |...|.+++|++++ +|++++.||.|++||..+++ .+... .+| .. .|++++|
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~ 303 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKW 303 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEE
T ss_pred EEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEE
Confidence 9987531 12334444 88999999999765 89999999999999998874 33333 456 55 8999999
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCC
Q 014114 310 HP--TLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 310 s~--~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+| ++++|++++.||.|+|||++.
T Consensus 304 ~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 304 LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-----CCEEEEETTSEEEEEEC--
T ss_pred ecCCCceEEEEecCCCcEEEEEecc
Confidence 99 689999999999999999864
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-36 Score=272.48 Aligned_cols=271 Identities=14% Similarity=0.146 Sum_probs=226.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|++|++..+ +....+.+|...+.. ++| +|++++|++|+.||.|++||+.+++.+..+..|
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~h~~~v~~--~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 106 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISD--VAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEeeCCCeEEEEeCCCc-----ccchhhccCCCceEE--EEE--cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence 46899999999999999875 566778888888554 445 668889999999999999999999998888775
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. ..+.++.+.+... .+++++.|+.+++|++.... .+..+. .|...|.+++|+|++
T Consensus 107 ~--------~~v~~~~~~~~~~--------~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 107 S--------NYVFCCNFNPQSN--------LIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG 161 (312)
T ss_dssp S--------SCEEEEEECSSSS--------EEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred C--------CCEEEEEEcCCCC--------EEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence 4 5788888876444 99999999999999986432 333333 467889999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
++|++++.|+.|++||+.+++.+..+.... ...+..++| +|++++|++++.|+.|++||+++++ .+..+
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~ 230 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGK-CLKTY 230 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTE-EEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEE
Confidence 999999999999999999988877664332 256888999 8999999999999999999999865 47777
Q ss_pred eecCCCeEE--EEe-eCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe--CCCeEEEEe
Q 014114 255 DFRETPIKA--VAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWD 329 (430)
Q Consensus 255 ~~~~~~i~~--~~~-s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~v~iwd 329 (430)
.+|...+.+ ..+ .+++.+|++|+.||.|++||+.+++.+..+.+| ...|.+++|+|++++|++++ .|+.|++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 777654332 233 467889999999999999999999999999998 89999999999999999997 699999998
Q ss_pred CC
Q 014114 330 IK 331 (430)
Q Consensus 330 ~~ 331 (430)
..
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-37 Score=328.42 Aligned_cols=325 Identities=17% Similarity=0.221 Sum_probs=242.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|++||+.++ +.+..+.+|...+..+++ +|+|++|++|+.||.|+|||+.+++.+..+..|
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~h~~~v~~~~~----s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLCCAF----SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEE----CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CEEEEeccCCCCEEEEEE----ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 46889999999999999986 677888889888555555 667889999999999999999999999888775
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc-----------------------cccCCc
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------------SAESSC 151 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-----------------------~~~~~~ 151 (430)
. ..+.++.+.+... ...+++++.||.+.+|++..... .+++.+
T Consensus 699 ~--------~~v~~~~~~~~~~------~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 699 S--------EQVNCCHFTNKSN------HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp S--------SCEEEEEECSSSS------CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred C--------CcEEEEEEecCCC------ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 4 3444444433211 11344444444444444321110 012233
Q ss_pred ceeeEEee-----------------------------------------------------------------ccCCceE
Q 014114 152 STVKSWNV-----------------------------------------------------------------CASGTIA 166 (430)
Q Consensus 152 ~~i~~~~~-----------------------------------------------------------------~~~~~i~ 166 (430)
+.+++|+. .|...|.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 44444432 2345688
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEE---
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD--- 243 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd--- 243 (430)
+++|+|++.++++++.++.|++||+.++..+..+..|. ..|.+++| +|++++|++++.|+.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL---------SWVHGVMF--SPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc---------cceEEEEE--CCCCCEEEEEeCCCeEEEEEccc
Confidence 89999999999999999999999999998888887765 44666666 55666666666666666665
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 014114 244 ----------------------------------------------------------------------------TSAQ 247 (430)
Q Consensus 244 ----------------------------------------------------------------------------~~~~ 247 (430)
+.++
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 3332
Q ss_pred CcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE-----------------------------------
Q 014114 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----------------------------------- 292 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----------------------------------- 292 (430)
+ ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 994 ~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 994 R-VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp S-CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEET
T ss_pred c-eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEEC
Confidence 2 3455667888999999999999999999999998888766432
Q ss_pred -----EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC
Q 014114 293 -----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 293 -----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d 366 (430)
+..+.+| ...|++++|+|++++|++++.|+.|++||+.+++++.. +.+|.. .|.+++|+|+|.+ ++++.|
T Consensus 1073 ~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~--l~~h~~-~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1073 ITGRIERDFTCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--LKGHNG-CVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp TTTCCCEEEECC-SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC--CCCCSS-CEEEEEECSSSSEEEEEETT
T ss_pred CCCceeEEEccc-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee--eccCCC-cEEEEEECCCCCEEEEEeCC
Confidence 3334455 78899999999999999999999999999999998887 667744 4699999999999 999999
Q ss_pred CcEEEecCCCCC
Q 014114 367 PMLEIQNGNDTQ 378 (430)
Q Consensus 367 ~~v~vw~~~~~~ 378 (430)
|.|++|+.....
T Consensus 1149 g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1149 GEIRIWNVSDGQ 1160 (1249)
T ss_dssp SCCCEEESSSSC
T ss_pred CEEEEEECCCCc
Confidence 999999987643
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-37 Score=302.76 Aligned_cols=326 Identities=12% Similarity=0.101 Sum_probs=243.9
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCc---ceEEEEeccCCCCC-CceEEEEccCCeEEEeccCCCceeeee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHS---SKCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
.+++++.||.|++||+... +.+..+..|.. .+.. +++ +|+ +++|++++.||.|++||+.+++.+..+
T Consensus 175 ~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPF-----KFSASDRTHHKQGSFVRD--VEF--SPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEEEEETTTEEEEEETTTB-----EEEEEECSSSCTTCCEEE--EEE--CSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEEEEeCCCcEEEEeCCCc-----ceeeeecccCCCCceEEE--EEE--CCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 6999999999999999876 66778888877 6544 445 667 889999999999999999999988877
Q ss_pred -e---ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc----------------------
Q 014114 92 -S---NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------- 145 (430)
Q Consensus 92 -~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~---------------------- 145 (430)
. .| ...+.++.+. ... .+++++.++.+.+|++.....
T Consensus 246 ~~~~~~~--------~~~v~~~~~~-~~~--------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (615)
T 1pgu_A 246 EDDQEPV--------QGGIFALSWL-DSQ--------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 308 (615)
T ss_dssp CBTTBCC--------CSCEEEEEES-SSS--------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE
T ss_pred ccccccc--------CCceEEEEEc-CCC--------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCC
Confidence 3 33 3567777776 333 777777788888887642210
Q ss_pred ----cccCCcceeeEEeec-------------------------------------------cCCceEEEEEcCCCCEEE
Q 014114 146 ----SAESSCSTVKSWNVC-------------------------------------------ASGTIAFSKVDISEKFSL 178 (430)
Q Consensus 146 ----~~~~~~~~i~~~~~~-------------------------------------------~~~~i~~~~~~~~~~~l~ 178 (430)
..+..++.+++|+.. |...|.+++| +++..|+
T Consensus 309 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCE
T ss_pred CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEE
Confidence 012234555555532 3344555555 3356666
Q ss_pred EecCCCeEEEEECCCCce-----------------------eeeecCCCCC-CCCcccCcceeEeEEeeCCCCCEEEEEe
Q 014114 179 FGGKGVEVNVWDLDKCEK-----------------------IWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 179 ~~~~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (430)
+++.|+.|++||+.+++. +..+...... ...+.+...+.+++| + +++|++++
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~ 463 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL--S--QNYVAVGL 463 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE--C--SSEEEEEE
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE--c--CCEEEEee
Confidence 677777777776643211 0000000000 001112356888888 4 88999999
Q ss_pred C-CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec-cccCcEEEEEEcC-
Q 014114 235 N-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHP- 311 (430)
Q Consensus 235 ~-dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~i~~s~- 311 (430)
. |+.|++||+..+......+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+ | ...|++++|+|
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~sp~ 542 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPA 542 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCC
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC-CCceeEEEEcCc
Confidence 9 999999999875421156677899999999999999999999999999999999999999888 6 99999999999
Q ss_pred ---------CCCEEEEEeCCCeEEEEeCCCC-ceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 312 ---------TLPIIASCGLDSYLRFWDIKTR-QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 312 ---------~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
++++|++++.||.|++||+.++ +++.. +.+|.. .|.+++|+|++.+++++.|+.|++|+...
T Consensus 543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~h~~-~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--LNAHKD-GVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEE--TTSSTT-CEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred cccccccccCCCEEEEEcCCCcEEEEECCCCceechh--hhcCcc-ceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 9999999999999999999998 66666 777844 46999999999988999999999999764
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-36 Score=285.79 Aligned_cols=313 Identities=8% Similarity=0.108 Sum_probs=251.1
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+..+++|+.||.|++||+.++ +.+..+.+|...+..++++ |++ +|++|+.||+|++||+.+++.+..+.
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~h~~~V~~l~~~----~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~ 200 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYA----HGG-ILVSGSTDRTVRVWDIKKGCCTHVFE 200 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEEC----STT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCC-----cEEEEEeCCCcCEEEEEEc----CCC-EEEEEeCCCCEEEEECCCCcEEEEEC
Confidence 3467999999999999999886 6778888999997666664 444 89999999999999999999888887
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCC---------------cceeeEE
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS---------------CSTVKSW 157 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~---------------~~~i~~~ 157 (430)
.|. ..+.++.+.... ....+++++.||.+.+|++.......... ...+...
T Consensus 201 ~h~--------~~v~~l~~~~~~------~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 201 GHN--------STVRCLDIVEYK------NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp CCS--------SCEEEEEEEESS------SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred CCC--------CccEEEEEecCC------CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 644 688888887422 22489999999999999987644221000 0012222
Q ss_pred eeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC
Q 014114 158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 237 (430)
..|...+.++ +++++++++++.|+.|++||+.+++.+..+..|. ..|.+++| +|++++|++++.|+
T Consensus 267 -~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 267 -RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHERKRCISASMDT 332 (464)
T ss_dssp -CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETTTTEEEEEETTS
T ss_pred -cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCEEEEEE--cCCCCEEEEEeCCC
Confidence 2455666666 5678999999999999999999999999888765 67999999 78999999999999
Q ss_pred cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
.|++||+++++ ++..+.+|...|.+++|+ +.+|++++.||.|++||+.++.....+.. ...+..++|+|++.+|+
T Consensus 333 ~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 407 (464)
T 3v7d_B 333 TIRIWDLENGE-LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILV 407 (464)
T ss_dssp CEEEEETTTTE-EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEE
T ss_pred cEEEEECCCCc-EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEE
Confidence 99999999865 588899999999999997 46999999999999999998887666542 67788899999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEe
Q 014114 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQ 372 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw 372 (430)
+++ |+.|++||+.+++.+... +..+ ...|++++|+. ..+ ++++.++.+.+|
T Consensus 408 ~~~-dg~i~iwd~~~g~~~~~~-~~~~-~~~v~~v~~~~-~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 408 SGS-ENQFNIYNLRSGKLVHAN-ILKD-ADQIWSVNFKG-KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEE-TTEEEEEETTTCCEEESC-TTTT-CSEEEEEEEET-TEEEEEEEETTEEEEE
T ss_pred Eec-CCeEEEEECCCCcEEehh-hccC-CCcEEEEEecC-CEEEEEEEeCCeEEEE
Confidence 998 899999999999998763 3344 45579999983 334 666677766554
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-37 Score=285.47 Aligned_cols=298 Identities=9% Similarity=0.011 Sum_probs=213.2
Q ss_pred EEEeccCCCCCCceEEEEccCC-------eEEEeccCCCceee--eeeecCCCCCCCCCCceEEEEeeccCcc-ccccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNG-------LTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQRE-ESSSRS 123 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg-------~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 123 (430)
+.+++| +|||++|++|+.+. .|+||++..+.... .+..+....+..+.+.+.++.+....-. ..++..
T Consensus 17 V~sv~f--s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 17 AYGAKF--LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp EEEEEE--EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred EEEEEE--eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 455555 67889999987543 59999987554321 1111111122345566666654221000 000011
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEee-------ccCCceEEEEEcCCCCEEEE--ecCCCeEEEEECCCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-------CASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKC 194 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~~~~~l~~--~~~dg~v~iwd~~~~ 194 (430)
..+++++.++.+++|++..... .+..... .+...+.+++|+|+++++++ ++.|++|++||+.++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVND-------QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTT-------EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred cEEEEecCCCcEEEEEecCCCc-------eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 1233344567777887654321 1111111 12345889999999998764 557899999999999
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce-EEeeecCCCeEEEEeeCCCCEE
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNI 273 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l 273 (430)
+.+..+..+ ..|.+++| +|++++|++++.+ .+.+|+..+++... .....|...|.+++|+|+++++
T Consensus 168 ~~~~~~~~~----------~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 168 TEKFEIETR----------GEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp EEEEEEECS----------SCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred cEEEEeCCC----------CceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 998887633 56999999 8999999998854 56677776655433 2345688899999999999999
Q ss_pred EEEcCCC----CEEEEEccCCeE----EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc
Q 014114 274 YIGNGSG----DLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL 345 (430)
Q Consensus 274 ~~~~~dg----~v~iwd~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 345 (430)
++++.|+ .+++|++..... ...+.+| ...|++++|+|+|++||+|+.|++|+|||+++++++..+ +.+|.
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-~~gH~ 312 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-KQAHS 312 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-TTSSS
T ss_pred EEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-cCccc
Confidence 9999887 588899877653 3456677 889999999999999999999999999999999998874 57785
Q ss_pred ceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 346 NEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 346 ~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.. |++++|+|||++ ++++.|++|+||+.+.
T Consensus 313 ~~-V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 313 FA-ITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SC-EEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CC-EEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 44 699999999999 9999999999999865
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-36 Score=303.70 Aligned_cols=328 Identities=12% Similarity=0.109 Sum_probs=244.2
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||.|+||+..+. +....+ .|...+..++| +| |++|++++.|++|+|||+.+++++..+..
T Consensus 30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~-~~~~~V~~l~f----sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~- 97 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQQQV-----EVVIKL-EDRSAIKEMRF----VK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV- 97 (902)
T ss_dssp TEEEEEETTSEEEEECSTTC-----EEEEEC-SSCCCEEEEEE----ET-TTEEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----EEEEEc-CCCCCEEEEEE----cC-CCEEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence 46899999999999998764 333333 35666555554 45 67999999999999999999988877752
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec------------------------------
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------ 144 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~------------------------------ 144 (430)
. ..|.++.+.+... .+++++.||.+++|++....
T Consensus 98 ~--------~~V~~v~~sp~g~--------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 98 P--------GKITSIDTDASLD--------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp S--------SCEEEEECCTTCS--------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred C--------CCEEEEEECCCCC--------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 1 3688888876444 89999999999999864321
Q ss_pred -----ccccCCcceeeEEeecc----------------------------CCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 014114 145 -----VSAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 145 -----~~~~~~~~~i~~~~~~~----------------------------~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 191 (430)
...+..++.+ +|++.. ...|.+++|+|++++|++|+.||.|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 0234567788 887542 256999999999999999999999999999
Q ss_pred CCCceeee--ec---CC-------------CC-----------C-------------------CCCcc------------
Q 014114 192 DKCEKIWT--AK---PP-------------PK-----------N-------------------SLGIF------------ 211 (430)
Q Consensus 192 ~~~~~~~~--~~---~~-------------~~-----------~-------------------~~~~~------------ 211 (430)
.+++.+.. +. .+ .. . ...+.
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 87665431 10 00 00 0 00000
Q ss_pred -------------------------------------------------------------------------------c
Q 014114 212 -------------------------------------------------------------------------------T 212 (430)
Q Consensus 212 -------------------------------------------------------------------------------~ 212 (430)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 0
Q ss_pred CcceeEeEEe--------------------------------eCCCCCEEEEEeCCCcEEEEECCCCCcc---eEEe--e
Q 014114 213 PTWFTSAAFL--------------------------------SIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSF--D 255 (430)
Q Consensus 213 ~~~v~~~~~~--------------------------------~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~--~ 255 (430)
...|++++|. .+|++++|++|+.|++|++||+.++... .... .
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 0112222221 0467889999999999999999875321 1111 1
Q ss_pred -----ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC----------------------------------------
Q 014114 256 -----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------------------------------------- 290 (430)
Q Consensus 256 -----~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---------------------------------------- 290 (430)
+|...|.+|+|+|++++||+|+.||+|+|||+.++
T Consensus 481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 78889999999999999999999999999999866
Q ss_pred -----eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee---c-cccceeEEEeeec-----C
Q 014114 291 -----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL---K-QHLNEVVFDSAFA-----D 356 (430)
Q Consensus 291 -----~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~-~~~~~~i~~~~~s-----~ 356 (430)
+++..+.+| .+.|++|+|+|+| +||+|+.|++|+|||++++..+....+ . +| ...|++++|+ |
T Consensus 561 ~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~ 637 (902)
T 2oaj_A 561 VRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFVIMEYGD 637 (902)
T ss_dssp CSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEEEEECTT
T ss_pred CCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEEEEecCC
Confidence 246777887 8999999999999 999999999999999988777653222 2 55 3447999999 8
Q ss_pred Cc---ce-eeecCCCcEEEecC
Q 014114 357 KE---VA-NAAADAPMLEIQNG 374 (430)
Q Consensus 357 ~g---~~-~~~~~d~~v~vw~~ 374 (430)
|| .+ ++++.|++|++|+.
T Consensus 638 Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 638 DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp SSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCcceEEEEEecCCcEEEEEE
Confidence 86 66 99999999999998
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=291.60 Aligned_cols=309 Identities=14% Similarity=0.176 Sum_probs=239.1
Q ss_pred EEEecCccCCcchhheec-CCCCcceEEEEeccCCCC-CCceEEEEccCCeEEEeccCC---Cceee-eeeecCCCCCCC
Q 014114 28 VIEARGEDGGVPKVVERW-GDPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN---GDLRV-AISNAGDSGAQP 101 (430)
Q Consensus 28 vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~---~~~~~-~~~~~~~~~~~~ 101 (430)
.|+..+ +++..+ .+|...+..+++ +| ++++|++|+.||.|+|||+.+ +.... .+.. .
T Consensus 47 ~w~~~g------~~~~~~~~~h~~~V~~~~~----s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-------~ 109 (437)
T 3gre_A 47 MGNLRG------KLIATLMENEPNSITSSAV----SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-------D 109 (437)
T ss_dssp GGGCCC------CEEEEECTTTTSCEEEEEE----ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-------E
T ss_pred cccccc------eEEeeeccCCCCceEEEEE----CCCCCCEEEEecCCceEEEeECcccccCcccceeeec-------c
Confidence 487666 567777 778888655555 55 778999999999999999876 43221 1111 1
Q ss_pred CCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc---ccCCcceeeEEeec---cCCceEEEE--EcCC
Q 014114 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---AESSCSTVKSWNVC---ASGTIAFSK--VDIS 173 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---~~~~~~~i~~~~~~---~~~~i~~~~--~~~~ 173 (430)
+...|.++.+.+... .+++++.||.+++|++...... .......++..... +...+.++. ++++
T Consensus 110 h~~~v~~~~~~~~~~--------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 110 CSSTVTQITMIPNFD--------AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp CSSCEEEEEECTTSS--------EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred CCCCEEEEEEeCCCC--------EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 336899999986444 8999999999999999633211 00011123333322 456677777 5688
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
+.+|++++.|+.|++||+.+++.+..+..+. |...|.+++| +|++++|++|+.||.|++||++.++ ++..
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~ 251 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSP-------RHGAVSSICI--DEECCVLILGTTRGIIDIWDIRFNV-LIRS 251 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCG-------GGCCEEEEEE--CTTSCEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCC-------CCCceEEEEE--CCCCCEEEEEcCCCeEEEEEcCCcc-EEEE
Confidence 9999999999999999999999998887631 1267999999 8999999999999999999999854 4666
Q ss_pred ee-ecCCCeEEEEee----CCCCEEEEEcCCCCEEEEEccCCeEEeEEecc-------------------------ccCc
Q 014114 254 FD-FRETPIKAVAEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGS 303 (430)
Q Consensus 254 ~~-~~~~~i~~~~~s----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~ 303 (430)
+. .|..+|.+++|+ |++.+|++|+.|+.|++||+++++++..+.+| |...
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred EecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence 65 677899999555 56889999999999999999999998888754 3567
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec-----------------------------------ccccee
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-----------------------------------QHLNEV 348 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----------------------------------~~~~~~ 348 (430)
|++++|+ ++++|++++.|+.|++||+.+++.+..+.-. .| ...
T Consensus 332 v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~ 409 (437)
T 3gre_A 332 LSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDI 409 (437)
T ss_dssp GCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------------CCC
T ss_pred eEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccc
Confidence 8899999 7789999999999999999999887764210 14 445
Q ss_pred EEEeeecCC--cce-eeecCCCcEEEec
Q 014114 349 VFDSAFADK--EVA-NAAADAPMLEIQN 373 (430)
Q Consensus 349 i~~~~~s~~--g~~-~~~~~d~~v~vw~ 373 (430)
|.+++|+++ +.+ ++++.||.|+||+
T Consensus 410 I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 410 INSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 799999998 667 9999999999995
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.1e-36 Score=299.41 Aligned_cols=293 Identities=11% Similarity=0.149 Sum_probs=232.9
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc-----eeeeeeecCCCCCCCCCCceEEEEeeccCcc
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
..+.+|...+.+++++.+ ++++|++|+.||+|+||++.+.. ....+.+| ...|.++.+.+...
T Consensus 376 ~~l~~H~~~V~~v~~~~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--------~~~v~~v~~s~~g~- 443 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--------SHFVEDVVLSSDGQ- 443 (694)
T ss_dssp EEEECCSSCEEEEECCTT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--------SSCEEEEEECTTSS-
T ss_pred hhcccCCceeEEEEecCC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--------CCcEEEEEECCCCC-
Confidence 457789999777766542 34789999999999999987643 23344444 36888888876444
Q ss_pred ccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 014114 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 197 (430)
.+++++.||.+++|++.... .++.+. .|...|.+++|+|++++|++|+.|++|++||+......
T Consensus 444 -------~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~ 507 (694)
T 3dm0_A 444 -------FALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY 507 (694)
T ss_dssp -------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred -------EEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce
Confidence 99999999999999986432 333443 57889999999999999999999999999998654433
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCC--CEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEE
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 275 (430)
....... .|...|.+++| +|++ ..|++++.|+.|++||+++.+ ....+.+|...|++++|+|++++|++
T Consensus 508 ~~~~~~~------~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 508 TISEGGE------GHRDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCAS 578 (694)
T ss_dssp EECSSTT------SCSSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eeccCCC------CCCCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 3222111 13477999999 6665 689999999999999999865 47888999999999999999999999
Q ss_pred EcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccc-----------
Q 014114 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH----------- 344 (430)
Q Consensus 276 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----------- 344 (430)
|+.|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++ |+.|+|||+++++.+..+.....
T Consensus 579 g~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp EETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------
T ss_pred EeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccccc
Confidence 99999999999999999888765 46899999999998887765 56699999999988876432110
Q ss_pred ---c--ceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 345 ---L--NEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 345 ---~--~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
. ...+.+++|+|+|.+ ++++.||.|++|+..
T Consensus 656 ~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 0 012688999999999 999999999999975
No 48
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=267.29 Aligned_cols=288 Identities=13% Similarity=0.190 Sum_probs=241.6
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
++...+.+|...+..+++ . ++++|++|+.||.|++||+.+++....+..|. ..+.++.+.+...
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--- 72 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--------GFLNSVCYDSEKE--- 72 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESSSEEEEEEEECS--------SCEEEEEEETTTT---
T ss_pred HHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--------ccEEEEEECCCCC---
Confidence 556788899999777766 3 56789999999999999998888888877654 5888898887544
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.+++++.+|.+.+|++...... ..+..+. .|...|.+++| ++++|++++.|+.|++|| .++.+..
T Consensus 73 -----~l~~~~~dg~i~~~~~~~~~~~-----~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 73 -----LLLFGGKDTMINGVPLFATSGE-----DPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp -----EEEEEETTSCEEEEETTCCTTS-----CC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred -----EEEEecCCCeEEEEEeeecCCC-----Ccccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 9999999999999998653321 2233333 56788999999 578999999999999999 6667777
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcC
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
+..+. ..+.++.|. +++++++++++.|+.|++||.. .....+.. |...+.+++|+|++. +++++.
T Consensus 138 ~~~~~---------~~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 138 LQAHN---------ASVWDAKVV-SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EECCS---------SCEEEEEEE-ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred cccCC---------CceeEEEEc-cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 76654 668999995 3489999999999999999943 34666666 889999999999998 999999
Q ss_pred CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCc
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
|+.|++||+++++.+..+..| ...|++++|+|++ .|++++.||.|++||+.+++.+.. +..|. ..+.+++|+|++
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~-~~i~~~~~~~~~ 278 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV--ITLPA-ISIWSVDCMSNG 278 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE--EECSS-SCEEEEEECTTS
T ss_pred CCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE--EeccC-ceEEEEEEccCC
Confidence 999999999999999999998 8999999999999 689999999999999999999888 45553 347999999999
Q ss_pred ceeeecCCCcEEEecCCCC
Q 014114 359 VANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 359 ~~~~~~~d~~v~vw~~~~~ 377 (430)
.+++++.|+.|++|+....
T Consensus 279 ~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 279 DIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEEEEETTSCEEEEESCGG
T ss_pred CEEEEeCCCcEEEEeCCCC
Confidence 9988999999999998763
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-36 Score=280.18 Aligned_cols=293 Identities=14% Similarity=0.116 Sum_probs=231.9
Q ss_pred hheecCCCCcceEEEEeccCCCCCC-ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+...+.+|...+..+++ +|++ ++|++|+.||.|+|||+.+++....+... ++...|.++.|.+..
T Consensus 65 ~~~~~~~h~~~v~~~~~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~~~~~~~~---- 130 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEW----HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM------GPGDAITGMKFNQFN---- 130 (383)
T ss_dssp EEEEECCCSSCEEEEEE----CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC------STTCBEEEEEEETTE----
T ss_pred eEEeccCCCCCEEEEEE----CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC------CcCCceeEEEeCCCC----
Confidence 34566778888655555 5566 79999999999999999988877666531 244689999987622
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec--cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 197 (430)
...+++++.|+.+.+|++.. ..+..+... +...|.+++|+|++++|++++.|+.|++||+ +++.+
T Consensus 131 ---~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 131 ---TNQLFVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp ---EEEEEEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred ---CCEEEEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 13899999999999999863 233333322 3477999999999999999999999999999 57777
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCC---cceEEeeecCCCeEEEEeeC-CCCE
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSFN 272 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~i~~~~~s~-~~~~ 272 (430)
..+..|. ..|.+++| +|++. +|++++.|+.|++||+++.+ .++..+ .|...|.+++|+| ++++
T Consensus 198 ~~~~~h~---------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 198 FKEKLHK---------AKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp EEEECSS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE
T ss_pred EEeccCC---------CcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE
Confidence 7777665 67999999 88888 99999999999999998732 224444 7899999999999 9999
Q ss_pred EEEEcCCCCEEEEEccCCeEEeEEeccc----------------cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 273 IYIGNGSGDLASVDIRTGKLLGCFIGKC----------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 273 l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
|++++.|+.|++||+++++.+..+..|. ...+..++|+|++++ +++.|+.|+|||+.+++.+
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~ 343 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV 343 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence 9999999999999999888777766541 134555777777766 7789999999999999998
Q ss_pred eEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 337 SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
..+....+ ...+..++|+|+|.+ ++++ |+.|++|+...
T Consensus 344 ~~l~~~~~-~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 344 HQLRDPNA-AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBTTB-CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeecCCCC-CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88432223 455677899999999 6665 99999999864
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-36 Score=282.06 Aligned_cols=294 Identities=11% Similarity=0.041 Sum_probs=234.8
Q ss_pred CcceEeecCCCcEEEEEecCccC-CcchhheecCCCCcceEEEEeccCCCCCC---ceEEEEccCCeEEEeccCCCce--
Q 014114 14 PLRALTFDSLGLIKVIEARGEDG-GVPKVVERWGDPHSSKCVLAASIDDSQND---PLLAVARKNGLTDILNPLNGDL-- 87 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---~~l~~g~~dg~i~iwd~~~~~~-- 87 (430)
+..|++|+.||.|++|++..+.. ........+.+|...+..++++.+..+++ ++|++++.||.|++||+.+++.
T Consensus 26 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 26 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 105 (397)
T ss_dssp SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred CCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc
Confidence 37899999999999999997521 11225677778888866666654211227 8999999999999999988886
Q ss_pred ---eeeeeecCCCCCCCCCCceEEEEee----ccCccccccCCce-EEEEccCCeeEEEEeee------ecccccCCcce
Q 014114 88 ---RVAISNAGDSGAQPEDDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TKVSAESSCST 153 (430)
Q Consensus 88 ---~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~-~~~~~~~g~i~v~~~~~------~~~~~~~~~~~ 153 (430)
+..+..|... .....+.++.+. +... . +++++.+|.+.+|++.. .....-. .
T Consensus 106 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~ 171 (397)
T 1sq9_A 106 KVIFEKLDLLDSD---MKKHSFWALKWGASNDRLLS--------HRLVATDVKGTTYIWKFHPFADESNSLTLNWS---P 171 (397)
T ss_dssp CEEEEEECCSCTT---GGGSCEEEEEEECCC----C--------EEEEEEETTSCEEEEEEESSSSHHHHTTTCCC---C
T ss_pred cccceeecccccc---cCCCcEEEEEEeeccCCCCc--------eEEEEEeCCCcEEEEeCCccccccccceeecc---C
Confidence 6666654200 002588899988 5333 7 99999999999999986 3221100 0
Q ss_pred eeEEe------eccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecC---C---CCCCCCcccCcceeEeEE
Q 014114 154 VKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---P---PKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 154 i~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~v~~~~~ 221 (430)
...+. ..+...|.+++|+|++ +|++++.|+.|++||+.+++.+..+.. | . ..|.+++|
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~---------~~i~~i~~ 241 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS---------NSIRSVKF 241 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC---------CCEEEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC---------CccceEEE
Confidence 00222 2467889999999999 999999999999999999999888876 4 3 66999999
Q ss_pred eeCCCCCEEEEEeCC---CcEEEEECCCCCcceEEeee-------------cCCCeEEEEeeCCCCEEEEEcCCCCEEEE
Q 014114 222 LSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGSGDLASV 285 (430)
Q Consensus 222 ~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~v~iw 285 (430)
+|++++|++++.| +.|++||+++++ ++..+.. |...|.+++|+|++++|++++.|+.|++|
T Consensus 242 --~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 242 --SPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp --CSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred --CCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 8999999999999 999999999865 4778888 99999999999999999999999999999
Q ss_pred EccCCeEEeEEe------cc--------------ccCcEEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCc
Q 014114 286 DIRTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 286 d~~~~~~~~~~~------~~--------------~~~~v~~i~~s~~~----------~~l~s~~~d~~v~iwd~~~~~ 334 (430)
|+++++++..+. .| |...|++++|+|++ ++|++++.||.|++||+.+|+
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999999998 54 27899999999998 799999999999999998764
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.6e-36 Score=270.78 Aligned_cols=277 Identities=10% Similarity=0.110 Sum_probs=221.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+||+.||+|+|||+...+.........+.+|...+..+++ +|+|++|++|+.||.|++|+............+
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~----s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 127 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI----SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE----CCCCCEEEEEcccccceEEeecccceeeeecCC
Confidence 3588999999999999987543333445678889888555544 668899999999999999999887766666543
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
. ..+....+... ...+++++.|+.+.+|++.... ........|...+..++|+++
T Consensus 128 ~--------~~~~~~~~~~~--------~~~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 128 T--------KDVLSVAFSSD--------NRQIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp S--------SCEEEEEECTT--------SSCEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred C--------CceeEEEEeec--------CccceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence 2 34554555443 3489999999999999875322 222223356788999999875
Q ss_pred -CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 174 -~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
..++++++.|+.|++||+.+++.+..+..|. ..|.+++| +|++++|++++.|+.|++||+++.+ ++.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~--s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~ 251 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTV--SPDGSLCASGGKDGQAMLWDLNEGK-HLY 251 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE-EEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEE--CCCCCEEEEEeCCCeEEEEEeccCc-eee
Confidence 4578899999999999999999998888765 67999999 8999999999999999999999855 466
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe---------ccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
.+.. ...|.+++|+|++. +++++.|+.|++||++++..+..+. +| ...|++++|+|++++|++|+.||
T Consensus 252 ~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 252 TLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred eecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence 6655 46899999999875 5556679999999999888776654 34 78999999999999999999999
Q ss_pred eEEEEeCCCCc
Q 014114 324 YLRFWDIKTRQ 334 (430)
Q Consensus 324 ~v~iwd~~~~~ 334 (430)
.|+|||+++|+
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999885
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-36 Score=278.36 Aligned_cols=301 Identities=13% Similarity=0.083 Sum_probs=239.6
Q ss_pred cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCc
Q 014114 45 WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
..+|...+..++++++......++++++.++.|+|||+.+++.+..+..+... .+...+.++.|.+... ..+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~----~~~~ 86 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSN----TSHP 86 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTT----TCCE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCC----CCCC
Confidence 34688887777777632223456777777889999999988888887765421 2446788898877532 1134
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeee---
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTA--- 200 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~--- 200 (430)
.+++++.+|.+.+|++.... .+..+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EEEEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred EEEEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 89999999999999976432 344444 5788999999999 9999999999999999999999988887
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc---------------------------eEE
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---------------------------VMS 253 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------------------------~~~ 253 (430)
..+. ..|.+++| +|++++|++++.|+.|++||+++++.. ...
T Consensus 158 ~~~~---------~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 158 EGHR---------DEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TSCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cccc---------CceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 3333 67999999 899999999999999999999874321 122
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--------------EEeEEeccccCcEEEEEEcCC--CCEEE
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIA 317 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~v~~i~~s~~--~~~l~ 317 (430)
...|...|.+++|+ +++|++++.|+.|++||+.+++ .+..+..| ...|++++|+|+ +++|+
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEE
T ss_pred ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEE
Confidence 23388999999998 6799999999999999998763 47778887 889999999999 99999
Q ss_pred EEeCCCeEEEEeCCCCceeeE--Eeecccc-ceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 318 SCGLDSYLRFWDIKTRQLLSA--VFLKQHL-NEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~~~~~~--~~~~~~~-~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+++.||.|++||+.++++... ..+.+|. ...|.+++|+|++.+ ++++.||.|++|+..
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999998865431 1144442 345799999999999 999999999999975
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=294.41 Aligned_cols=326 Identities=10% Similarity=-0.016 Sum_probs=224.0
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCC--CCCCceEEEEccCCeEEEeccCCCceeee--ee
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDLRVA--IS 92 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~~dg~i~iwd~~~~~~~~~--~~ 92 (430)
+++++.||+|+||++.++... ......+..|.+.+..++++++. .+++.+||+|+.||+|+|||+.+++.... +.
T Consensus 176 laS~s~D~tI~iWd~~~~~~~-~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLH-CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp ------CEEEEEEEEETTTCC-EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hccCCCCceEEEEEccCCCCC-ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 566889999999999874111 11123455667777777776631 24578999999999999999977643210 00
Q ss_pred ecCC-CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEE--E
Q 014114 93 NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS--K 169 (430)
Q Consensus 93 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~--~ 169 (430)
...+ ..+.++...+.++.|.+. ..|++++.||++++|++.... ..+..+. .|...|.++ +
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~---------~~lasgs~DgtV~lWD~~~~~-------~~~~~~~-~H~~~V~sv~~~ 317 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP---------TTVVCGFKNGFVAEFDLTDPE-------VPSFYDQ-VHDSYILSVSTA 317 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS---------SEEEEEETTSEEEEEETTBCS-------SCSEEEE-CSSSCEEEEEEE
T ss_pred ecCceEEEEcCCCCEEEEEecCC---------CeEEEEeCCCEEEEEECCCCC-------CceEEee-cccccEEEEEEE
Confidence 0000 011234568888888641 379999999999999987432 1222233 578899999 5
Q ss_pred EcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC
Q 014114 170 VDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 170 ~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 248 (430)
|+|++ ++|++|+.|++|++||+++++++..+..+... ..|.+++| +|++..|++++.|++|++||++.+.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------~~v~~v~f--sp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------SNLVPVVY--CPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------CSCCCEEE--ETTTTEEEEECSSSEEEEEETTCTT
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------CcccceEe--CCCcCeEEEeCCCCcEEEEECcccc
Confidence 78887 89999999999999999988776555443210 24788999 8899999999999999999999866
Q ss_pred cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec----cccCcEEEEEEcCCCCEEEEEeCCCe
Q 014114 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG----KCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~i~~s~~~~~l~s~~~d~~ 324 (430)
. +..+.+|...|++|+|+|++++|++|+.|++|++||+... .+..+.. ++...|++++|+|++..+. . .| .
T Consensus 389 ~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~-~~-~ 463 (524)
T 2j04_B 389 A-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-I-DS-S 463 (524)
T ss_dssp C-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-E-CC-C
T ss_pred c-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-c-cC-C
Confidence 4 6778899999999999999999999999999999998653 3222211 1123578999999998552 2 22 3
Q ss_pred EEEEeCC-CCceeeEEeeccccceeEEEeeecCCcc---e-eeecCCCcEEEecCCCC
Q 014114 325 LRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEV---A-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 325 v~iwd~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~-~~~~~d~~v~vw~~~~~ 377 (430)
+.+|+.. ++..+.. +.+|. ..|.+++|+|++. . ++++.+|.|+||++..+
T Consensus 464 ~~~~~~~~~g~~~~~--l~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 464 YEVYPLTVNDVSKAK--IDAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCC---------------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceecccccCCcceee--ecCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 4445433 4566665 66774 4469999999965 5 88899999999998753
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-35 Score=264.22 Aligned_cols=250 Identities=12% Similarity=0.107 Sum_probs=199.2
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+..+.+|...+..+++ +|+|++||+|+.|++|+|||+..+. .+..+
T Consensus 2 ~~~~~~h~~~V~~~~~----s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l---------------------------- 49 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVM----DYYGKRMATCSSDKTIKIFEVEGETHKLIDTL---------------------------- 49 (297)
T ss_dssp CEECCSCSSCEEEEEE----CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE----------------------------
T ss_pred ceeccCCcCceEEEEE----CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE----------------------------
Confidence 3456778888665555 5678899999999999999985321 11111
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCCc--
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE-- 195 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~-- 195 (430)
. .|.+.|.+++|++ ++++|++|+.|++|++||+.+++
T Consensus 50 --------------------------------------~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 50 --------------------------------------T-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp --------------------------------------C-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred --------------------------------------c-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 1 3567888899976 38899999999999999998764
Q ss_pred eeeeecCCCCCCCCcccCcceeEeEEeeCCC--CCEEEEEeCCCcEEEEECCCCCc-ceEEeeecCCCeEEEEeeCC---
Q 014114 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPD--- 269 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~--- 269 (430)
.+..+..|. ..|.+++| +|+ +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~h~---------~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 91 QIAVHAVHS---------ASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp CCEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEEeecCC---------CceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 444455443 67999999 665 88999999999999999987532 24667889999999999997
Q ss_pred ----------CCEEEEEcCCCCEEEEEccCCe----EEeEEeccccCcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q 014114 270 ----------SFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 270 ----------~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~i~~s~~~---~~l~s~~~d~~v~iwd~~~ 332 (430)
+++|++|+.|+.|++||+++++ ....+.+| ...|++++|+|++ .+|++++.|++|+|||+.+
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999998765 56778888 8999999999985 7999999999999999987
Q ss_pred Cce--eeEEee--ccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 333 RQL--LSAVFL--KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 333 ~~~--~~~~~~--~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
... .... + ..+ ...+++++|+|+|.+ ++++.|+.|++|+...
T Consensus 239 ~~~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 239 EQGPWKKTL-LKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCCEEEE-SSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCccceee-eecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 532 1111 2 344 445799999999999 8999999999998754
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.8e-37 Score=285.06 Aligned_cols=274 Identities=14% Similarity=0.129 Sum_probs=223.7
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|+|++|++|+.||.|++||+.+++....+.. ..+..+.++.. .+..+++++.+|.+.+|++.
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~----------~~~~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR----------ADYTAVDTAKL-------QMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETTTTSCS----------CCEEEEEEECS-------SSCEEEEEETTSCEEEECTT
T ss_pred eecCCeEEEEEcCCcEEEEEecccceeeEEec----------CCceEEEEEec-------CCCEEEEEECCCCEEEEeCC
Confidence 77888999999999999999987776555443 24455555443 33489999999999999976
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
... .+..+ ..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|. ..|.+++|
T Consensus 128 ~~~--------~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~ 189 (420)
T 3vl1_A 128 FNL--------QREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR---------ATVTDIAI 189 (420)
T ss_dssp SCE--------EEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS---------SCEEEEEE
T ss_pred Ccc--------eeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC---------CcEEEEEE
Confidence 322 22222 2578899999999999999999999999999999999888887765 77999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee---cC---------------------CCeEEEEeeCCCCEEEEEc
Q 014114 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RE---------------------TPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 222 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~---------------------~~i~~~~~s~~~~~l~~~~ 277 (430)
+|++++|++++.|+.|++||+++++ .+..+.. |. ..+.+++|+|++++|++|+
T Consensus 190 --~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 190 --IDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp --ETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred --cCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 7899999999999999999999865 4666654 23 3445555678999999999
Q ss_pred CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-eeEEeeccccceeEEEeeec
Q 014114 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~i~~~~~s 355 (430)
.||.|++||+++++.+..+...|...|++++|+|++. +|++++.||.|++||+++++. +.. +..|....+.++.|.
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE--FLINEGTPINNVYFA 344 (420)
T ss_dssp TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--EEESTTSCEEEEEEE
T ss_pred CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh--hhccCCCCceEEEeC
Confidence 9999999999999988888765589999999999998 999999999999999998765 555 445446667888665
Q ss_pred CCcce-eeecCCCcEEEecCCC
Q 014114 356 DKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 356 ~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
++.+ ++++.|+.|++|+...
T Consensus 345 -~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 345 -AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -TTEEEEEETTTEEEEEEEECC
T ss_pred -CCCEEEEecCCccEEEEeccC
Confidence 5666 9999999999999876
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-36 Score=320.60 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=254.9
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
....+++|+.||.|++||+.++ .....+.+|...+..++ + +|++++|++++.||.|++||+.+++....+.
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~--~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQK-----ECRNTMFGHTNSVNHCR--F--SPDDELLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTSS-----SEEEEECCCSSCEEEEE--E--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred CceEEEEEeCCCeEEEEECCCc-----chhheecCCCCCEEEEE--E--ecCCCEEEEEECCCeEEEEeCCCCcccceec
Confidence 4457899999999999999986 66778888988855554 4 6678899999999999999998887666554
Q ss_pred ec-----------------CCCCCCCC------------------------------CCceEEEEeeccCccccccCCce
Q 014114 93 NA-----------------GDSGAQPE------------------------------DDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 93 ~~-----------------~~~~~~~~------------------------------~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.. ....+++. ...+.++.+.+ .+..
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp--------~~~~ 854 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP--------YDHL 854 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS--------STTE
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC--------CCCE
Confidence 21 11112222 22333333333 3347
Q ss_pred EEEEccCCeeEEEEeeeec-------------------c----cccCCcceeeEEeecc---------------------
Q 014114 126 LLTCTTKGKASMRSIEVTK-------------------V----SAESSCSTVKSWNVCA--------------------- 161 (430)
Q Consensus 126 ~~~~~~~g~i~v~~~~~~~-------------------~----~~~~~~~~i~~~~~~~--------------------- 161 (430)
+++++.+|.+.+|++.... . .+++.++.+++|+...
T Consensus 855 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 8888888999988864321 1 1345677888887431
Q ss_pred --------------------------CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcc
Q 014114 162 --------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (430)
Q Consensus 162 --------------------------~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (430)
...+.+++|+|+++++++|+.+|.|++||+.+++....+..|. ..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~---------~~ 1005 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK---------KA 1005 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS---------SC
T ss_pred cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC---------Cc
Confidence 2458899999999999999999999999999988887777664 55
Q ss_pred eeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC---------------------------------------cceEEeee
Q 014114 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------------------RPVMSFDF 256 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------------------------~~~~~~~~ 256 (430)
|.+++| +|++++|++++.||.|++||+.+++ .....+.+
T Consensus 1006 v~~l~~--s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A 1006 VRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp CCCEEE--CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC
T ss_pred eEEEEE--CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc
Confidence 677777 6677777777777766666654421 13455667
Q ss_pred cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 257 ~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+| ...|++++|+|++++|++++.||.|++||+.+++.+
T Consensus 1084 ~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 8889999999999999999999999999999999999999998 899999999999999999999999999999999887
Q ss_pred eEEe-------eccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 337 SAVF-------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 337 ~~~~-------~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
..+. ..+| ...|++++|+|||.+ ++++ |.|++|+....
T Consensus 1163 ~~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1163 HSCAPISVEEGTATH-GGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp CCCCCCC-------C-CSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEecccccccccccc-CceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 6520 1334 344699999999999 5554 89999998764
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-35 Score=271.65 Aligned_cols=289 Identities=10% Similarity=0.064 Sum_probs=232.2
Q ss_pred CCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCC
Q 014114 46 GDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
..|...+..+++ +|++++|++|+.||.|+|||+.+++ .+..+..|. ..+.++.+.+...
T Consensus 5 ~~~~~~i~~~~~----s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--------~~v~~~~~~~~~~------- 65 (372)
T 1k8k_C 5 SFLVEPISCHAW----NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--------GQVTGVDWAPDSN------- 65 (372)
T ss_dssp ESCSSCCCEEEE----CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--------SCEEEEEEETTTT-------
T ss_pred cccCCCeEEEEE----CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--------CcccEEEEeCCCC-------
Confidence 346777555555 5678899999999999999998887 667776544 6889999877444
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEE-eeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eee
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWT 199 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~ 199 (430)
.+++++.+|.+.+|++.... ..... ...+...|.+++|+|++++|++++.|+.|++||+..+.. ...
T Consensus 66 -~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 66 -RIVTCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp -EEEEEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 89999999999999986432 11111 234678899999999999999999999999999988763 222
Q ss_pred e-cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC-----------------CCcceEEeeecCCCe
Q 014114 200 A-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----------------QRRPVMSFDFRETPI 261 (430)
Q Consensus 200 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----------------~~~~~~~~~~~~~~i 261 (430)
+ ..+ ...|.+++| +|++++|++++.|+.|++||++. ...++..+..|...|
T Consensus 137 ~~~~~---------~~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 137 IKKPI---------RSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ECTTC---------CSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred eeccc---------CCCeeEEEE--cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 2 222 267999999 89999999999999999999641 123577788899999
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cce--ee
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT--RQL--LS 337 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~--~~~--~~ 337 (430)
.+++|+|++++|++++.|+.|++||+++++++..+..| ...|.+++|+|++.+|+++ .|+.|++|++.+ ++. +.
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEee
Confidence 99999999999999999999999999999999999988 8899999999999988877 899999999987 421 00
Q ss_pred E----------------------------------Eee-ccccceeEEEeeec-CCc---ce-eeecCCCcEEEecCCC
Q 014114 338 A----------------------------------VFL-KQHLNEVVFDSAFA-DKE---VA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~----------------------------------~~~-~~~~~~~i~~~~~s-~~g---~~-~~~~~d~~v~vw~~~~ 376 (430)
. ..+ .+|.. .|++++|. ++| .+ ++++.||.|++|+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 112 36644 56999866 665 67 9999999999999754
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-36 Score=281.64 Aligned_cols=289 Identities=17% Similarity=0.267 Sum_probs=230.6
Q ss_pred EeccCCCCCCc-eEEEE----------ccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCc
Q 014114 56 AASIDDSQNDP-LLAVA----------RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR 124 (430)
Q Consensus 56 ~~~~~~~p~g~-~l~~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (430)
+++| +|+|+ +|++| +.||.|+|||+.+++....+.. ..+...+.++.|.+...
T Consensus 17 ~~~~--sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~-------- 80 (416)
T 2pm9_A 17 TFAW--SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS------LQVDSKFNDLDWSHNNK-------- 80 (416)
T ss_dssp BCCB--CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC------CCCSSCEEEEEECSSSS--------
T ss_pred eEee--CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE------EecCCceEEEEECCCCC--------
Confidence 3455 77776 88998 8899999999987764321111 12346899999866444
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCc------ee
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE------KI 197 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~------~~ 197 (430)
.|++++.+|.+.+|++...... ...+..+. .|...|.+++|+|+ +++|++++.|+.|++||+.+++ ..
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~----~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNA----INSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSC----CCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred eEEEEccCCeEEEeeccccccc----ccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 8999999999999998752110 11333333 57789999999998 8999999999999999998876 32
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCcceEEeeec------CCCeEEEEeeCCC
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDS 270 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~i~~~~~s~~~ 270 (430)
..+.. ...+...|.+++| +|+ +.+|++++.|+.|++||+++++ .+..+..+ ...|.+++|+|++
T Consensus 156 ~~~~~------~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 156 LTPGQ------SMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp BCCCC------SCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccc------ccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECCCC
Confidence 22211 0113367999999 787 7899999999999999999865 46677665 7899999999997
Q ss_pred -CEEEEEcCCC---CEEEEEccCC-eEEeEEe-ccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEEeecc
Q 014114 271 -FNIYIGNGSG---DLASVDIRTG-KLLGCFI-GKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 271 -~~l~~~~~dg---~v~iwd~~~~-~~~~~~~-~~~~~~v~~i~~s~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 343 (430)
.+|++++.|+ .|++||++++ +++..+. +| ...|++++|+| ++.+|++++.|+.|++||+.+++++.. +.+
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~~ 303 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ--FPA 303 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE--EEC
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee--ecC
Confidence 6899999998 9999999986 6677777 77 89999999999 899999999999999999999999888 556
Q ss_pred ccceeEEEeeecCCc-ce-eeecCCCcEEEecCCCCC
Q 014114 344 HLNEVVFDSAFADKE-VA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 344 ~~~~~i~~~~~s~~g-~~-~~~~~d~~v~vw~~~~~~ 378 (430)
|.. .+.+++|+|++ .+ ++++.|+.|++|+.....
T Consensus 304 ~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RGN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 644 46999999999 66 999999999999987654
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5e-35 Score=273.39 Aligned_cols=274 Identities=15% Similarity=0.171 Sum_probs=218.6
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecC--CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWG--DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+++.+.|++|+|||+.++ +....+. +|... |.+++| +|+|++|++|+.||.|+|||+.+++.+..+.+
T Consensus 117 n~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~--V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~ 187 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSG-----DILQLLQMEQPGEY--ISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187 (420)
T ss_dssp SEEEEEETTEEEEEETTTC-----CEEEEEECCSTTCC--EEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CEEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCc--EEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence 3566667999999999986 5555444 45555 555555 77899999999999999999999999988877
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
|. ..+.++.+. +..+++++.++.+.+|+..... ..+..+. .|...+..+.++|+
T Consensus 188 h~--------~~v~~~s~~----------~~~l~sgs~d~~i~~~d~~~~~-------~~~~~~~-~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 188 HS--------ARVGSLSWN----------SYILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPD 241 (420)
T ss_dssp CS--------SCEEEEEEE----------TTEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTT
T ss_pred CC--------CceEEEeeC----------CCEEEEEeCCCceeEeeecccc-------eeeEEec-ccccceeeeeecCC
Confidence 54 567766652 2489999999999999975432 2333443 57788999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCce----eeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEE--eCCCcEEEEECCC
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAG--TNDHQVRLYDTSA 246 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~--~~dg~i~~wd~~~ 246 (430)
+.++++++.|+.|++|+..+++. +.....+ ...|.+++| +|. ..+++++ +.|+.|++||+.+
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~---------~~~V~~~~~--~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---------QGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC---------SSCEEEEEE--CTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeeccc---------CCceeeeee--CCCcccEEEEEeecCCCEEEEEeCCc
Confidence 99999999999999999987653 2333333 267999999 554 4455553 5799999999998
Q ss_pred CCcceEEeeecCCCeEEEEeeCCCCEEEEEc--CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCe
Q 014114 247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~ 324 (430)
+.. ...+..| ..+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+| .+.|++++|+|+|++|++|+.|++
T Consensus 311 ~~~-~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 311 GAC-LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp TEE-EEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTE
T ss_pred ccc-ceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCe
Confidence 663 5555554 6789999999999888765 7899999999999999999998 999999999999999999999999
Q ss_pred EEEEeCCCCceeeE
Q 014114 325 LRFWDIKTRQLLSA 338 (430)
Q Consensus 325 v~iwd~~~~~~~~~ 338 (430)
|+|||+....+...
T Consensus 388 vriWdv~~~~~~~~ 401 (420)
T 4gga_A 388 LRLWRCFELDPARR 401 (420)
T ss_dssp EEEECCSCSSCC--
T ss_pred EEEEECCCCCccch
Confidence 99999987766554
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-35 Score=273.06 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=222.2
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCC-CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGD-PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++++.||.|++||+.++ +....+.. |... +.+++| +|++++|++|+.||.|+|||+.+++.+..+..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~~~~~~--v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG-----SVSALAETDESTY--VASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC-----CEEEEEECCTTCC--EEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEECCCeEEEeeCCCC-----cEeEeeecCCCCC--EEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence 56899999999999999875 44444443 5666 445555 66888999999999999999999998888876
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
|. ..+.++.+. . ..+++++.+|.+.+|++.... ..+..+. .|...|.+++|+|+
T Consensus 175 ~~--------~~v~~~~~~--~--------~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 175 HQ--------ARVGCLSWN--R--------HVLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRSD 228 (401)
T ss_dssp CS--------SCEEEEEEE--T--------TEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTT
T ss_pred CC--------CceEEEEEC--C--------CEEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcCC
Confidence 44 678888872 1 389999999999999986322 2333443 57889999999999
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEe--CCCcEEEEECCCCCcc
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT--NDHQVRLYDTSAQRRP 250 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~--~dg~i~~wd~~~~~~~ 250 (430)
+++|++|+.|+.|++||+.+++.+..+..+. ..|.+++| +|++ .++++++ .|+.|++||+.+++ +
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~--~p~~~~ll~~~~gs~d~~i~i~d~~~~~-~ 296 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAW--CPWQSNLLATGGGTMDKQIHFWNAATGA-R 296 (401)
T ss_dssp SSEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEE--CTTSTTEEEEECCTTTCEEEEEETTTCC-E
T ss_pred CCEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEE--CCCCCCEEEEecCCCCCEEEEEECCCCC-E
Confidence 9999999999999999999999988887664 67999999 7765 4566654 79999999999866 3
Q ss_pred eEEeeecCCCeEEEEeeCCCCEEEE--EcCCCCEEEEEccCCeEEe--EEeccccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 014114 251 VMSFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~ 326 (430)
+..+. +...|.+++|+|++++|++ |+.||.|++||+.+++... .+.+| ...|.+++|+|++++|++++.||.|+
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 66664 5678999999999999999 5589999999999876544 46677 89999999999999999999999999
Q ss_pred EEeCCCCceeeE
Q 014114 327 FWDIKTRQLLSA 338 (430)
Q Consensus 327 iwd~~~~~~~~~ 338 (430)
+|++.+++.+..
T Consensus 375 iw~~~~~~~~~~ 386 (401)
T 4aez_A 375 FWRVYDGDHVKR 386 (401)
T ss_dssp EEECCC------
T ss_pred EEECCCCccccc
Confidence 999999888765
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=272.30 Aligned_cols=299 Identities=12% Similarity=0.122 Sum_probs=230.2
Q ss_pred ecCCCCcceEEEEeccCCCCCCc-eEEEEcc---CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 44 RWGDPHSSKCVLAASIDDSQNDP-LLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.+.+|...+..+++ +|+++ ++++|+. ||.|+|||+.+++....... ++...+.++.+.+...
T Consensus 13 ~~~~h~~~v~~~~~----~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~--- 78 (357)
T 3i2n_A 13 IQKGFNYTVFDCKW----VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSL--- 78 (357)
T ss_dssp EEEECSSCEEEEEE----CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCT---
T ss_pred hccCCCCceEEEEE----cCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCC---
Confidence 44568888555544 56664 4556766 99999999998887655432 1235888888877531
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE------EcCCCCEEEEecCCCeEEEEECCC
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLDK 193 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~v~iwd~~~ 193 (430)
.+..+++++.+|.+.+|++.... ..+..+. .|...|.++. |+|++++|++++.|+.|++||+.+
T Consensus 79 --~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 79 --QQRYLATGDFGGNLHIWNLEAPE-------MPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp --TTCCEEEEETTSCEEEECTTSCS-------SCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred --CCceEEEecCCCeEEEEeCCCCC-------ccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence 13489999999999999987533 1333443 5778899995 578999999999999999999998
Q ss_pred Cc-eeeeecCCCCCCCCcccCcceeEeEEee--CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC--
Q 014114 194 CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-- 268 (430)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-- 268 (430)
++ .+..+..+.... ...+.++.|.+ +|++++|++++.|+.|++||+++++ ......|...|.+++|+|
T Consensus 149 ~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 149 KDDPVANMEPVQGEN-----KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp CSSCSEEECCCTTSC-----CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESCSS
T ss_pred CCCcceeccccCCCC-----CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCCCC
Confidence 76 666666544321 13578888411 7899999999999999999999865 344567889999999999
Q ss_pred -CCCEEEEEcCCCCEEEEEccCCeEEeEEe-----ccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-------
Q 014114 269 -DSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ------- 334 (430)
Q Consensus 269 -~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~iwd~~~~~------- 334 (430)
++.+|++++.||.|++||+++++.+..+. +| ...|++++|+|+++ +|++++.||.|++||++++.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 89999999999999999998877655554 77 89999999999998 89999999999999998643
Q ss_pred ------------eeeEEeeccccceeEEEeeecCCcce-e-eecCCCcEEEecCCCC
Q 014114 335 ------------LLSAVFLKQHLNEVVFDSAFADKEVA-N-AAADAPMLEIQNGNDT 377 (430)
Q Consensus 335 ------------~~~~~~~~~~~~~~i~~~~~s~~g~~-~-~~~~d~~v~vw~~~~~ 377 (430)
.+.. +.+| ...|.+++|+|+|.+ + +++.|+.|++|+....
T Consensus 301 ~g~~~~~~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQN--VTLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TSCCCCCCCEEEEEEE--EECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCccccccccceeec--cccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 3333 5566 445799999999998 6 7999999999998753
No 62
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=276.10 Aligned_cols=316 Identities=14% Similarity=0.146 Sum_probs=235.4
Q ss_pred CCcEEEEEecCccCCcchhheecCC--CCcceEEEEeccCCCCCCc-eEEEEccCCeEEEecc----CCCce------ee
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGD--PHSSKCVLAASIDDSQNDP-LLAVARKNGLTDILNP----LNGDL------RV 89 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~----~~~~~------~~ 89 (430)
...+.+|+.... ...+.. |...+.. +.| +|+|+ +|++|+.||.|+||++ .+++. ..
T Consensus 24 ~~~~~~~~~~~~-------~~~~~~~~~~~~v~~--~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 92 (425)
T 1r5m_A 24 NSIDSSDDLDGF-------VKILKEIVKLDNIVS--STW--NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIA 92 (425)
T ss_dssp ----------CC-------CEECEEEEECSCCSE--EEE--CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEE
T ss_pred ccccccccchhh-------hhheeeeeccCceEE--EEE--CCCCCcEEEEecCCceEEEEEEecccCCccccccccccc
Confidence 345677777652 233333 4456444 445 66788 9999999999999999 88873 33
Q ss_pred eeeecCCC--CCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEE
Q 014114 90 AISNAGDS--GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 90 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
.+...... ....+...+.++.+.+... .|++++.+|.+.+|+... ..+..+. .|...|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~dg~i~i~~~~~---------~~~~~~~-~~~~~v~~ 154 (425)
T 1r5m_A 93 ELRHPFALSASSGKTTNQVTCLAWSHDGN--------SIVTGVENGELRLWNKTG---------ALLNVLN-FHRAPIVS 154 (425)
T ss_dssp EEECCCCCC------CBCEEEEEECTTSS--------EEEEEETTSCEEEEETTS---------CEEEEEC-CCCSCEEE
T ss_pred cccccccccccccCCCCceEEEEEcCCCC--------EEEEEeCCCeEEEEeCCC---------Ceeeecc-CCCccEEE
Confidence 33221000 0112456899999877444 999999999999998221 2333333 47789999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCc------ccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI------FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
++|+|++++|++++.|+.|++||+.+++.+..+..+......+ .....+.++.| +++ ..+++++.++.|++
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~i~~ 231 (425)
T 1r5m_A 155 VKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW--VDD-DKFVIPGPKGAIFV 231 (425)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE--EET-TEEEEECGGGCEEE
T ss_pred EEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE--cCC-CEEEEEcCCCeEEE
Confidence 9999999999999999999999999999888887654221000 00112788899 555 56889999999999
Q ss_pred EECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC
Q 014114 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
||+..++ ++..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ +|++++.
T Consensus 232 ~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~ 308 (425)
T 1r5m_A 232 YQITEKT-PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-KVISCSM 308 (425)
T ss_dssp EETTCSS-CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-EEEEEET
T ss_pred EEcCCCc-eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-EEEEEeC
Confidence 9999865 57788899999999999999999999999999999999999999999887 8999999999999 9999999
Q ss_pred CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 322 DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 322 d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
|+.|++||+.+++.+.. +..|. ..+.+++|+|++.+ ++++.|+.|++|+...
T Consensus 309 d~~i~i~d~~~~~~~~~--~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 309 DGSVRLWSLKQNTLLAL--SIVDG-VPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp TSEEEEEETTTTEEEEE--EECTT-CCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred CCcEEEEECCCCcEeEe--cccCC-ccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 99999999999998887 44553 44699999999999 8999999999999865
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=263.62 Aligned_cols=283 Identities=13% Similarity=0.141 Sum_probs=235.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||.|++||+.++ +.+..+.+|...+..++ + +|++++|++++.||.|++||+.+++.+..+..
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~--~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 114 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIWSID--V--DCFTKYCVTGSADYSIKLWDVSNGQCVATWKS- 114 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-----CEEEEECCCSSCEEEEE--E--CTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhcCCcEEEEE--E--cCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence 46899999999999999876 67788888888855554 4 66788999999999999999999998887762
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC-----CeeEEEEeeeeccccc---CCcceeeEEeeccCC--c
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSAE---SSCSTVKSWNVCASG--T 164 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~v~~~~~~~~~~~---~~~~~i~~~~~~~~~--~ 164 (430)
. ..+.++.+.+... .+++++.+ +.+.+|++........ .....+.... .+.. .
T Consensus 115 ~--------~~v~~~~~~~~~~--------~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 177 (369)
T 3zwl_B 115 P--------VPVKRVEFSPCGN--------YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDA 177 (369)
T ss_dssp S--------SCEEEEEECTTSS--------EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCC
T ss_pred C--------CCeEEEEEccCCC--------EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccc
Confidence 2 4788888877544 89999888 9999999987543210 0111222222 2233 8
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCC-CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEE
Q 014114 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd 243 (430)
+.+++|+|++++|++++.||.|++||+.+ .+.+..+..+. ..|.+++| +|++.+|++++.|+.|++||
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQF--SPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEE--CCCCCEEEEecCCceEEEEE
Confidence 99999999999999999999999999998 67777777664 67999999 89999999999999999999
Q ss_pred CCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC--------------CEEEEEccCCeEEeEEeccccCcEEEEEE
Q 014114 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
+++++. +..+. +...+.+++|+|+++++++++.++ .+++||+.+++.+..+.+| ...|++++|
T Consensus 247 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~ 323 (369)
T 3zwl_B 247 VSTLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAI 323 (369)
T ss_dssp TTTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEE
T ss_pred CCCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEE
Confidence 998663 55555 678999999999999999999888 8999999999999999998 899999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 310 s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
+|++++|++++.||.|++|++.++.....
T Consensus 324 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred CCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 99999999999999999999987665444
No 64
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-35 Score=292.46 Aligned_cols=275 Identities=11% Similarity=0.098 Sum_probs=222.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+||+.||.|+||++.............+.+|...+..+++ +|++++|++|+.||.|+|||+.+++.+..+.+|
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~----s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h 471 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL----SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH 471 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEE----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEE----CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC
Confidence 4589999999999999986322222334567789888655555 567889999999999999999999988888775
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEE--eeccCCceEEEEEcC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDI 172 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~ 172 (430)
. ..|.++.+.+... .+++++.|+.+++|++.... ...+. ...|...|.+++|+|
T Consensus 472 ~--------~~v~~~~~s~~~~--------~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 472 T--------KDVLSVAFSLDNR--------QIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp S--------SCEEEEEECTTSS--------CEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECS
T ss_pred C--------CCEEEEEEeCCCC--------EEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeC
Confidence 5 6888898876444 89999999999999864221 11111 124667899999999
Q ss_pred CC--CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 173 SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
++ ..|++++.|+.|++||+.+++....+..|. ..|.+++| +|++++|++++.|+.|++||+++++.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~sg~~Dg~i~iwd~~~~~~- 595 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAV--SPDGSLCASGGKDGVVLLWDLAEGKK- 595 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSBCEEEETTTTEE-
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCce-
Confidence 76 689999999999999999999988888775 67999999 89999999999999999999998653
Q ss_pred eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc------------------cCcEEEEEEcCC
Q 014114 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------------------SGSIRSIARHPT 312 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~~v~~i~~s~~ 312 (430)
+..+.. ...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+. ...+++++|+|+
T Consensus 596 ~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 596 LYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp EECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 555544 46899999999998887765 5569999999999887775431 113789999999
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q 014114 313 LPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~~ 331 (430)
+++|++|+.||.|+||++.
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999985
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-35 Score=279.05 Aligned_cols=293 Identities=13% Similarity=0.115 Sum_probs=218.6
Q ss_pred cCCCCcceEEEEeccCCCC-CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCC
Q 014114 45 WGDPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
...|...++++++ +| ++.+||+|+.||.|+|||+.+++....+.. .+|.+.|.++.|.+.. +
T Consensus 115 ~~~~~~~V~~l~~----~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~~-------~ 177 (435)
T 4e54_B 115 AAPFDRRATSLAW----HPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPLN-------T 177 (435)
T ss_dssp EEECSSCEEEEEE----CSSCTTCEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSSC-------T
T ss_pred CCCCCCCEEEEEE----eCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCCC-------C
Confidence 3345666555555 44 456899999999999999987765544432 1345789999987532 2
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec--cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
..|++++.||++++|++... .+..+... +...+.+++|+|++++|++|+.||.|++||+.. +.+..+.
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~ 247 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR 247 (435)
T ss_dssp TEEEEECSSSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB
T ss_pred CEEEEEeCCCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe
Confidence 48999999999999997532 22333222 234578899999999999999999999999864 4555565
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcc--eEEeeecCCCeEEEEeeCCCCEEEEEcC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 278 (430)
.|. ..|.+++| +|++. +|++++.|+.|++||++..+.. +....+|...|++++|+|++++|++++.
T Consensus 248 ~h~---------~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 248 MHK---------KKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp CCS---------SCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred ccc---------ceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence 554 77999999 77765 7889999999999999875432 2334578999999999999999999999
Q ss_pred CCCEEEEEccCCeEEeEEecccc-----CcEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeeEEee
Q 014114 279 SGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCG------------LDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 279 dg~v~iwd~~~~~~~~~~~~~~~-----~~v~~i~~s~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~ 341 (430)
|+.|+|||+.++.....+..|.. ..+..+.|+|++.+++++. .++.|++||..+++.+..+ .
T Consensus 317 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-~ 395 (435)
T 4e54_B 317 KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL-Y 395 (435)
T ss_dssp SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-C
T ss_pred CCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-e
Confidence 99999999999888777765511 1234456777777666654 3457999999999998874 3
Q ss_pred ccccceeEEEe-eecCCcceeeecCCCcEEEecCCCC
Q 014114 342 KQHLNEVVFDS-AFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 342 ~~~~~~~i~~~-~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
.+|... |.++ +|+|+|.+++++.|+.|+||+....
T Consensus 396 ~~~~~~-v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 396 DPESSG-ISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp CSSCCC-CCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred CCCCCc-EEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 345444 4665 7999999954556889999998753
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.5e-35 Score=260.99 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=213.5
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecC
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
.+++.+.|++|+|||+.++ +.+..+..+.....+.++++ +|++++|++|+.||.|+|||+.+++.+..+.+|.
T Consensus 37 ~~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~ 109 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 109 (318)
T ss_dssp SEEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CEEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCcc
Confidence 3566678999999999986 55555544333333555666 7788999999999999999999999999888765
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 175 (430)
..+.++... +..+++++.++.+.+|...... ..+... ..|...+..+.++++++
T Consensus 110 --------~~~~~~~~~----------~~~l~s~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 110 --------ARVGSLSWN----------SYILSSGSRSGHIHHHDVRVAE-------HHVATL-SGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp --------SCEEEEEEE----------TTEEEEEETTSEEEEEETTSSS-------CEEEEE-ECCSSCEEEEEECTTSS
T ss_pred --------ceEEEeecC----------CCEEEEEecCCceEeeecCCCc-------eeEEEE-cCccCceEEEEEcCCCC
Confidence 355444432 2389999999999999865432 223333 35778899999999999
Q ss_pred EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EE--EEEeCCCcEEEEECCCCCcceE
Q 014114 176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF--VAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 176 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l--~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
+|++++.|+.|++||+.+++......... ..+...|.++.+ .|++. .+ ++++.++.|++||..... ..
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~ 234 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTF-----TQHQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSGA--CL 234 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEE-----CCCCSCEEEEEE--CTTSTTEEEEEECTTTCEEEEEETTTCC--EE
T ss_pred EEEEEecCcceeEEECCCCcccccceeee-----cccCCceEEEEe--cCCCCcEEEEEecCCCCEEEEEeccccc--cc
Confidence 99999999999999998865432211100 001256888888 55544 33 456788999999998855 33
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEc--CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
....+...+..+.|+|++..+++++ .|+.|++||+++++++.++.+| .+.|++++|+|++++|++|+.||+|+|||+
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 4455678899999999998887654 7999999999999999999998 999999999999999999999999999999
Q ss_pred CCCc
Q 014114 331 KTRQ 334 (430)
Q Consensus 331 ~~~~ 334 (430)
.+..
T Consensus 314 ~~~d 317 (318)
T 4ggc_A 314 FELD 317 (318)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 67
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=268.66 Aligned_cols=286 Identities=15% Similarity=0.133 Sum_probs=234.6
Q ss_pred CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 47 DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+|...+.+.++++ + +..+++++.||.|+|||+.+++....+.. .+...|.++.|.+... .+
T Consensus 89 ~~~~~~~~~~~~~--s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~--------~l 149 (401)
T 4aez_A 89 GIIDDYYLNLLDW--S--NLNVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSHDGS--------FL 149 (401)
T ss_dssp TCCCCTTCBCEEE--C--TTSEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECTTSS--------EE
T ss_pred CCcCCceEEEEee--c--CCCEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECCCCC--------EE
Confidence 3444444444555 3 24588899999999999999998877765 2346899999877444 89
Q ss_pred EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeecCCCC
Q 014114 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPK 205 (430)
Q Consensus 127 ~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~ 205 (430)
++++.+|.+.+|++.... .++.+. .|...|.+++| ++++|++++.||.|++||+. ....+..+..|.
T Consensus 150 ~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 217 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQT--------KLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS- 217 (401)
T ss_dssp EEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS-
T ss_pred EEECCCCeEEEEECcCCe--------EEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCC-
Confidence 999999999999986432 344444 57789999999 45799999999999999998 456666776664
Q ss_pred CCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC-CEEEEEc--CCCCE
Q 014114 206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGN--GSGDL 282 (430)
Q Consensus 206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~--~dg~v 282 (430)
..|.+++| +|++.+|++++.|+.|++||+++++ ++..+..|...|.+++|+|++ .++++++ .|+.|
T Consensus 218 --------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 218 --------SEVCGLAW--RSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp --------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred --------CCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 67999999 8899999999999999999999855 577888899999999999977 4555654 79999
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
++||+.+++.+..+.. ...|.+++|+|++++|++++ .||.|++||+.+++......+.+|.. .|.+++|+|+|.+
T Consensus 287 ~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-~v~~~~~s~dg~~ 363 (401)
T 4aez_A 287 HFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-RVLYSALSPDGRI 363 (401)
T ss_dssp EEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-CCCEEEECTTSSE
T ss_pred EEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-CEEEEEECCCCCE
Confidence 9999999999988864 67899999999999999954 89999999999987777666777754 4699999999999
Q ss_pred -eeecCCCcEEEecCCCC
Q 014114 361 -NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 361 -~~~~~d~~v~vw~~~~~ 377 (430)
++++.|+.|++|+....
T Consensus 364 l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEECTTSEEEEEECCC-
T ss_pred EEEEeCCCcEEEEECCCC
Confidence 99999999999998764
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-35 Score=271.89 Aligned_cols=284 Identities=15% Similarity=0.205 Sum_probs=224.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCC-----CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGD-----PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
..+++++.+|.|++|++..+ ..+..+.. |...+..++++.+..+++++|++|+.||.|+|||+.+++.+.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 109 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQ-----GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK 109 (366)
T ss_dssp CEEEEEEETTEEEEEEECGG-----GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE
T ss_pred ceEEEECCCCEEEEEEcCCC-----cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee
Confidence 44777888889999999864 33333332 556777777777655568899999999999999999999988
Q ss_pred eeeecCCCCCCCCCCceEEEEeec-cCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe--eccCCceE
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIA 166 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~ 166 (430)
.+..|. ..|.++.+.+ .. ..+++++.||.+++|++.... .+..+. ..|...|.
T Consensus 110 ~~~~~~--------~~i~~~~~~~~~~--------~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 110 HYVGHG--------NAINELKFHPRDP--------NLLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVL 165 (366)
T ss_dssp EEESCC--------SCEEEEEECSSCT--------TEEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEE
T ss_pred eecCCC--------CcEEEEEECCCCC--------CEEEEEeCCCeEEEEEeecCe--------EEEEecccccccCcee
Confidence 887644 6899998876 33 389999999999999986432 333332 25778999
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC-------------------CCCCCCcccCcceeEeEEeeCCCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~ 227 (430)
+++|+|++++|++++.||.|++||+.+++.+..+... ........+...|.+++| + +
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~ 241 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--L--G 241 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--E--T
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--c--C
Confidence 9999999999999999999999999987654433210 000000013477999999 4 7
Q ss_pred CEEEEEeCCCcEEEEECCCCCc-------------ceEEeeecCCCeEEEEeeCC--CCEEEEEcCCCCEEEEEccCCeE
Q 014114 228 RKFVAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 228 ~~l~~~~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
++|++++.|+.|++||+.+... .+..+..|...|.+++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 7999999999999999987542 36677889999999999999 99999999999999999998753
Q ss_pred ----EeEEecc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 293 ----LGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 293 ----~~~~~~~-~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
...+..| +...|++++|+|++++|++++.||.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 4466665 26899999999999999999999999999985
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=276.31 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=222.2
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc-----------eeeeeeecCCCC----CCCCCCceEEEEee
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDSG----AQPEDDGIVGLHLF 112 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~----~~~~~~~i~~~~~~ 112 (430)
+... +.+++| +|+|++||+|+.||.|+|||+.+++ ....+.+|.+.. .......|.++.|.
T Consensus 27 ~~~~--V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 27 EADI--ISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GGGS--EEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccCc--EEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 3455 555555 6788999999999999999998776 355565543110 00001468888887
Q ss_pred ccCccccccCCceEEEEccCCeeEEEEeeeeccccc-----C--------------------------CcceeeEEeecc
Q 014114 113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE-----S--------------------------SCSTVKSWNVCA 161 (430)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-----~--------------------------~~~~i~~~~~~~ 161 (430)
+... ...+++++.|+.+++|++........ . .....+.+...|
T Consensus 103 ~~~~------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 103 PQKN------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CCCS------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred CCCC------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 7541 13899999999999999976432100 0 001122344467
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCC-CceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i 239 (430)
...|.+++|+|++++|++| .|+.|++||+.+ ++.+..+..... ....|...|.+++| +|++ ++|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA--NMEELTEVITAAEF--HPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS--SGGGCCCCEEEEEE--CSSCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc--cccccCcceEEEEE--CCCCCcEEEEEeCCCeE
Confidence 8899999999999999998 799999999984 444432211110 01123477999999 8888 999999999999
Q ss_pred EEEECCCCCc---ceEEeeecCC------------CeEEEEeeCCCCEEEEEcCCCCEEEEEccC-CeEEeEEeccccCc
Q 014114 240 RLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS 303 (430)
Q Consensus 240 ~~wd~~~~~~---~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~ 303 (430)
++||+++++. .+..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+.+| ...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccc
Confidence 9999998653 1577777775 8999999999999999998 9999999997 8888888887 431
Q ss_pred ---------------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec--------------------------
Q 014114 304 ---------------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-------------------------- 342 (430)
Q Consensus 304 ---------------v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-------------------------- 342 (430)
+..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 334999999999999999999999999998876421000
Q ss_pred ---cccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 343 ---QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 343 ---~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
-.....|..++|+|++.+ ++++.+ .+.+|..
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~-~~~~~~~ 444 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKENIIAVATTN-NLYIFQD 444 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSSEEEEECSS-CEEEEEC
T ss_pred ccccccCCceeEEEECCCCCEEEEEecc-eeeeecc
Confidence 011234688999999999 555554 5777764
No 70
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-34 Score=256.57 Aligned_cols=268 Identities=11% Similarity=0.109 Sum_probs=217.2
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecC--CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWG--DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAI 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~ 91 (430)
.+++++ ||.|++|++..+.. ......+. .|... +.++++ +|++++|++++.||.|++||+.+++ ....+
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~--v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGN--KSPVSQLDCLNRDNY--IRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTC--CSCSEEEECSCTTSB--EEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred EEEEcC-CCeEEEEECCCCCc--eeeeecccccCCCCc--EEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 455565 99999999987421 11222333 56666 455555 6688899999999999999998877 33444
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
..+ ...+.++.+.+... .+++++.+|.+.+|++.... .+..+. .|...|.+++|+
T Consensus 138 ~~~--------~~~i~~~~~~~~~~--------~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~ 192 (337)
T 1gxr_A 138 TSS--------APACYALAISPDSK--------VCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDIS 192 (337)
T ss_dssp ECS--------SSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEC
T ss_pred ccC--------CCceEEEEECCCCC--------EEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEEC
Confidence 433 35788888876444 89999999999999986432 333443 367889999999
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
|++++|++++.|+.|++||+.+++.+..+... ..+.+++| +|++++|++++.++.|++||+...+ .
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~~v~~~~~--s~~~~~l~~~~~~~~i~~~~~~~~~--~ 258 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT----------SQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--K 258 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeecCC----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCC--e
Confidence 99999999999999999999999888776532 56899999 8999999999999999999999855 4
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... | ...|.+++|+|++++|++++.||.|++|++.
T Consensus 259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 5677899999999999999999999999999999999998875543 4 7899999999999999999999999999963
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.8e-35 Score=267.13 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=225.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|++||+.++ .......+.+|...+..+++ +|++++|++++.||.|++||+.+++....+...
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~h~~~v~~~~~----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDW----APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEE----ETTTTEEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCC---cEEeeeeecCCCCcccEEEE----eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence 35788889999999999874 11167788888888655555 557889999999999999999888755554321
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.+...+.++.+.+... .+++++.++.+.+|++...... .........|...|.+++|+|++
T Consensus 94 ------~~~~~v~~~~~~~~~~--------~l~~~~~d~~v~i~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 94 ------RINRAARCVRWAPNEK--------KFAVGSGSRVISICYFEQENDW-----WVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ------CCSSCEEEEEECTTSS--------EEEEEETTSSEEEEEEETTTTE-----EEEEEECTTCCSCEEEEEECTTS
T ss_pred ------cCCCceeEEEECCCCC--------EEEEEeCCCEEEEEEecCCCcc-----eeeeeeecccCCCeeEEEEcCCC
Confidence 2345788888876444 9999999999999998754311 12233334567899999999999
Q ss_pred CEEEEecCCCeEEEEECC------------------CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC
Q 014114 175 KFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (430)
++|++++.|+.|++||+. .++.+..+..+. ..|.+++| +|++++|++++.|
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d 223 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---------GWVHGVCF--SANGSRVAWVSHD 223 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---------SCEEEEEE--CSSSSEEEEEETT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC---------CeEEEEEE--CCCCCEEEEEeCC
Confidence 999999999999999954 566676666554 67999999 8999999999999
Q ss_pred CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC--CeE--E-------------------
Q 014114 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL--L------------------- 293 (430)
Q Consensus 237 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~--~------------------- 293 (430)
+.|++||+++++ ++..+..|..+|.+++|+|++++|++| .|+.|++|++.. ++. +
T Consensus 224 ~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (372)
T 1k8k_C 224 STVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 301 (372)
T ss_dssp TEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred CEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence 999999999866 588889999999999999999988888 899999999987 421 1
Q ss_pred -----------------eEEe-ccccCcEEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCcee
Q 014114 294 -----------------GCFI-GKCSGSIRSIARH-PTL---PIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 294 -----------------~~~~-~~~~~~v~~i~~s-~~~---~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
..+. +| ...|++++|+ +++ .+|++++.||.|++||+.+++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 302 FQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 2333 66 8999999966 676 99999999999999999876543
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=271.78 Aligned_cols=316 Identities=9% Similarity=0.063 Sum_probs=245.2
Q ss_pred CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCC-CCceEEEEccCCeEEEeccCCCceeeeeeec-----CC
Q 014114 23 LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNA-----GD 96 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~ 96 (430)
++.+++|++... +....+.+|...+.+++ + +| ++++|++|+.||.|+|||+.+++....+... ..
T Consensus 22 ~~~~~v~~~~~~-----~~~~~~~~h~~~v~~~~--~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 92 (408)
T 4a11_B 22 ESTRRVLGLELN-----KDRDVERIHGGGINTLD--I--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGR 92 (408)
T ss_dssp HHHHHHHTEEEC-----TTEEECCCCSSCEEEEE--E--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECT
T ss_pred cCcceeeccccC-----cceeeeeccCCcEEEEE--E--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccc
Confidence 356888888865 56677778988855555 4 66 7889999999999999999988766555421 01
Q ss_pred CCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC---
Q 014114 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--- 173 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--- 173 (430)
.....+...|.++.+.+... ..+++++.+|.+.+|++.... .+..+ .+...+.++.++|.
T Consensus 93 ~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~iwd~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 93 DHPDVHRYSVETVQWYPHDT-------GMFTSSSFDKTLKVWDTNTLQ--------TADVF--NFEETVYSHHMSPVSTK 155 (408)
T ss_dssp TCTTCCSSCEEEEEECTTCT-------TCEEEEETTSEEEEEETTTTE--------EEEEE--ECSSCEEEEEECSSCSS
T ss_pred cccccCCCcEEEEEEccCCC-------cEEEEEeCCCeEEEeeCCCCc--------cceec--cCCCceeeeEeecCCCC
Confidence 11123567899999876322 389999999999999986432 33333 35678999999884
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
+.++++++.++.|++||+.+++.+..+..+. ..|.+++| +|++. +|++++.||.|++||++....++.
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~ 224 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCLI 224 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCSE
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCcccc
Confidence 4599999999999999999998888887765 67999999 78888 589999999999999988664455
Q ss_pred Ee---------------eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc----ccCcEEEEEEcCCC
Q 014114 253 SF---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHPTL 313 (430)
Q Consensus 253 ~~---------------~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~i~~s~~~ 313 (430)
.+ ..|...|.+++|+|++++|++++.|+.|++||+.+++....+..+ ....+........+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS 304 (408)
T ss_dssp ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS
T ss_pred cccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCC
Confidence 55 568889999999999999999999999999999988765544322 01222222333345
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 314 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
..+++++.|+.|++||+.+++++.. +.+|.. .|.+++|+|++.+ ++++.||.|++|+.....
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITM--LKGHYK-TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEE--ECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ceEEEEecCCEEEEEECcCCcceee--eccCCC-eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 5677778899999999999999988 667744 4699999999998 999999999999988743
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-34 Score=292.29 Aligned_cols=319 Identities=12% Similarity=0.063 Sum_probs=254.7
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.+|.|+|||+.++ ..+..+..|...+..+++ +|++++|++|+.||.|+|||+.+++.+..+..|
T Consensus 26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~----s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTETPVRAGKF----IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEE----EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCC-----ceEEEEecCCCcEEEEEE----eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 46889999999999999876 677788889888655555 557889999999999999999999998888765
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-C
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~ 173 (430)
. +.+.++.|.+... .+++++.+|.+.+|++.... ..+..+. .|...|.+++|+| +
T Consensus 97 ~--------~~v~~~~~s~~~~--------~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 97 P--------DYIRSIAVHPTKP--------YVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD 152 (814)
T ss_dssp S--------SCEEEEEECSSSS--------EEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred C--------CCEEEEEEeCCCC--------EEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence 4 6788899877544 89999999999999986431 1223333 5678899999999 8
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
++.|++++.||.|++||+.++.....+..+. ...+.+++|.+.+++.+|++++.||.|++||+.+++ .+..
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~ 223 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT 223 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEE
Confidence 8999999999999999998887776665542 255889999433499999999999999999999865 5888
Q ss_pred eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCC
Q 014114 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIKT 332 (430)
Q Consensus 254 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~s~~~d~~v~iwd~~~ 332 (430)
+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ...+.+++|+|++.. +++++.|+.+.+|++..
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 8899999999999999999999999999999999999999999988 889999999999863 34445577788998765
Q ss_pred CceeeEEeec----------------------------------------cccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 333 RQLLSAVFLK----------------------------------------QHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 333 ~~~~~~~~~~----------------------------------------~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
......+... .+....+.+++|+|+|++++.+.++.+.+|
T Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~ 382 (814)
T 3mkq_A 303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIY 382 (814)
T ss_dssp CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEE
T ss_pred CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEE
Confidence 4322211000 011222578899999988433348889999
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
+...
T Consensus 383 ~~~~ 386 (814)
T 3mkq_A 383 TALA 386 (814)
T ss_dssp ETTT
T ss_pred ECcc
Confidence 8653
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-34 Score=255.41 Aligned_cols=272 Identities=14% Similarity=0.118 Sum_probs=220.5
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC---ceeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~---~~~~~~ 91 (430)
..+++|+.||.|++||+.++ .....+..|...+..+++ +|++++|++|+.||.|++|++... +.+..+
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~~~~v~~~~~----~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTGQGFLNSVCY----DSEKELLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp TEEEEEETTSEEEEEEESSS-----EEEEEEEECSSCEEEEEE----ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred CEEEEEEcCCcEEEEECCCC-----EEEEEeecCCccEEEEEE----CCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence 46899999999999999875 556677778777555544 567889999999999999998764 334444
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.. +...+.++.+ .. ..+++++.+|.+.+|+.. ..+..+. .|...+.++.|.
T Consensus 101 ~~--------~~~~i~~~~~--~~--------~~l~~~~~d~~i~~~d~~----------~~~~~~~-~~~~~v~~~~~~ 151 (313)
T 3odt_A 101 IG--------HQGNVCSLSF--QD--------GVVISGSWDKTAKVWKEG----------SLVYNLQ-AHNASVWDAKVV 151 (313)
T ss_dssp CC--------CSSCEEEEEE--ET--------TEEEEEETTSEEEEEETT----------EEEEEEE-CCSSCEEEEEEE
T ss_pred hh--------cccCEEEEEe--cC--------CEEEEEeCCCCEEEEcCC----------cEEEecc-cCCCceeEEEEc
Confidence 43 3467888887 22 389999999999999811 2333443 467899999998
Q ss_pred C-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014114 172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 172 ~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 250 (430)
| +++++++++.|+.|++|| ..+....+... +...+.+++| +|++. +++++.|+.|++||+++++ +
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~--------~~~~i~~~~~--~~~~~-~~~~~~dg~i~i~d~~~~~-~ 217 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQ--NDKVIKTFSGI--------HNDVVRHLAV--VDDGH-FISCSNDGLIKLVDMHTGD-V 217 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEE--TTEEEEEECSS--------CSSCEEEEEE--EETTE-EEEEETTSEEEEEETTTCC-E
T ss_pred cCCCCEEEEEECCCCEEEEe--cCceEEEEecc--------CcccEEEEEE--cCCCe-EEEccCCCeEEEEECCchh-h
Confidence 8 899999999999999999 44455555441 1267999999 67777 9999999999999999866 5
Q ss_pred eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+..+..|...|.+++|+|++ .|++++.|+.|++||+++++++..+..| ...|.+++|+|+++ +++++.||.|++||+
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 88889999999999999999 6899999999999999999999999998 88999999999998 667899999999999
Q ss_pred CCCceeeEEee
Q 014114 331 KTRQLLSAVFL 341 (430)
Q Consensus 331 ~~~~~~~~~~~ 341 (430)
.+++.+....+
T Consensus 295 ~~~~~~~~~~~ 305 (313)
T 3odt_A 295 EKSRWASEDEI 305 (313)
T ss_dssp CGGGCCC----
T ss_pred CCCceeehhhh
Confidence 99887766433
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=289.65 Aligned_cols=344 Identities=8% Similarity=0.021 Sum_probs=235.7
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCC------------------CcceEEEEeccCCCCCCceEEEEccCCe
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDP------------------HSSKCVLAASIDDSQNDPLLAVARKNGL 76 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~p~g~~l~~g~~dg~ 76 (430)
..+++|+.||.| +||+.++ +....+..| ... +.+++| +|+|++|++|+.||.
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~--V~~v~f--spdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPK--VIQSLY--HPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEEECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCC--EEEEEE--CTTSSEEEEEETTCC
T ss_pred CEEEEEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCC--eEEEEE--cCCCCEEEEEECCCe
Confidence 468999999999 9999875 444555443 233 566666 788999999999999
Q ss_pred EEEeccCCCceeee--ee---ecCCCCCC-----CCCCceEEEEeeccCccccccCCceEEEEccC-----CeeEEEEee
Q 014114 77 TDILNPLNGDLRVA--IS---NAGDSGAQ-----PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIE 141 (430)
Q Consensus 77 i~iwd~~~~~~~~~--~~---~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~v~~~~ 141 (430)
|+|||+.+++++.. +. .|.+.... .+...|.++.|......+ ....+++++.+ +.+.+|++.
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd---~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE---YTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT---EEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC---CCEEEEeCCCCCCCCCceEEEEecC
Confidence 99999999887653 21 12111000 123467777775422100 11245555443 256666632
Q ss_pred ee------------------------------------------c----------ccccCCcceeeEEeeccC-------
Q 014114 142 VT------------------------------------------K----------VSAESSCSTVKSWNVCAS------- 162 (430)
Q Consensus 142 ~~------------------------------------------~----------~~~~~~~~~i~~~~~~~~------- 162 (430)
.. + ....+.++.+++|++..+
T Consensus 312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~ 391 (902)
T 2oaj_A 312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS 391 (902)
T ss_dssp ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence 00 0 001123466777764211
Q ss_pred ----------CceEE----------------------------------EEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 014114 163 ----------GTIAF----------------------------------SKVDISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 163 ----------~~i~~----------------------------------~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 198 (430)
..|.+ ++|+|++++|++|+.|++|++||+.++....
T Consensus 392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 22333 4457889999999999999999998874210
Q ss_pred --eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC----------------------------
Q 014114 199 --TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------- 248 (430)
Q Consensus 199 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------------------------- 248 (430)
.+...........|...|.+++| +|++++||+|+.||+|+|||+.+++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svaf--spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISF--AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEE--ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred CceEEeechhhcCCCCCCceeEEEe--cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 00000000000123477999999 8999999999999999999997642
Q ss_pred ----------------cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeE-----Ee-ccccCcEEE
Q 014114 249 ----------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FI-GKCSGSIRS 306 (430)
Q Consensus 249 ----------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-----~~-~~~~~~v~~ 306 (430)
+++..+.+|...|++|+|+|+| +||+|+.|++|+|||++++..+.. +. +| ...|++
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~s 627 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTC 627 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEE
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEE
Confidence 2356778899999999999999 999999999999999988877642 22 66 889999
Q ss_pred EEEc-----CCC---CEEEEEeCCCeEEEEeC---CCCceeeEEeecccc----ceeEEEee-ec---------------
Q 014114 307 IARH-----PTL---PIIASCGLDSYLRFWDI---KTRQLLSAVFLKQHL----NEVVFDSA-FA--------------- 355 (430)
Q Consensus 307 i~~s-----~~~---~~l~s~~~d~~v~iwd~---~~~~~~~~~~~~~~~----~~~i~~~~-~s--------------- 355 (430)
|+|+ ||| ++|++|+.|++|++||+ .+|+.+.. +.+|. ...|..++ |+
T Consensus 628 v~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~ 705 (902)
T 2oaj_A 628 IEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ--LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQ 705 (902)
T ss_dssp EEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE--EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHH
T ss_pred EEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE--ecCceecCCCCceEEEEeEecCCCCcccCCHHHHh
Confidence 9999 886 89999999999999999 78888777 44453 23345554 55
Q ss_pred -------CCcceeeecCCCcEEEecCCCCC
Q 014114 356 -------DKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 356 -------~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
+++.+++++ +..+++|+....+
T Consensus 706 ~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k 734 (902)
T 2oaj_A 706 NLSKGLCIPGIVLITG-FDDIRLITLGKSK 734 (902)
T ss_dssp GGGGTCCCCEEEEEEC-SSEEEEECTTCCC
T ss_pred ccCCCCCCCeEEEEEe-ccceEEEeCcccc
Confidence 556554444 7789999998743
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-34 Score=279.16 Aligned_cols=311 Identities=12% Similarity=0.029 Sum_probs=248.0
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcc-eEEEEeccCCCCCCceEEEEccCCeEEEeccCCC--------ce
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSS-KCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--------DL 87 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--------~~ 87 (430)
+++++ ++.|+||++.++ ....+....+.+|... +..++++. .+++++|++|+.||.|+|||+.++ +.
T Consensus 33 l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~h~~~~v~~~~~sp--~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~ 108 (615)
T 1pgu_A 33 IAYPC-GKSAFVRCLDDG-DSKVPPVVQFTGHGSSVVTTVKFSP--IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 108 (615)
T ss_dssp EEEEE-TTEEEEEECCSS-CCSSCSEEEECTTTTSCEEEEEECS--STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE
T ss_pred EEEec-CCeEEEEECCCC-CCccccceEEecCCCceEEEEEECc--CCCCCEEEEecCCCEEEEEeCCCCcccccccccc
Confidence 44444 899999999863 1111356778888887 77776643 117889999999999999999755 44
Q ss_pred eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC----CeeEEEEeeeecccccCCcceeeEEeeccCC
Q 014114 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
+..+..| ...+.++.+.+... .+++++.+ +.+.+|+.. ..+..+. .|..
T Consensus 109 ~~~~~~~--------~~~v~~~~~s~~~~--------~l~~~~~~~~~~~~v~~~d~~----------~~~~~~~-~~~~ 161 (615)
T 1pgu_A 109 KSEFQVL--------AGPISDISWDFEGR--------RLCVVGEGRDNFGVFISWDSG----------NSLGEVS-GHSQ 161 (615)
T ss_dssp EEEEECC--------SSCEEEEEECTTSS--------EEEEEECCSSCSEEEEETTTC----------CEEEECC-SCSS
T ss_pred cchhhcc--------cccEEEEEEeCCCC--------EEEEeccCCCCccEEEEEECC----------Ccceeee-cCCc
Confidence 5555443 35788898877444 88888887 688888722 2333333 5778
Q ss_pred ceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEE
Q 014114 164 TIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRL 241 (430)
Q Consensus 164 ~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~ 241 (430)
.|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..+... ...|.+++| +|+ +++|++++.|+.|++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~--~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------GSFVRDVEF--SPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT------TCCEEEEEE--CSTTCCEEEEEETTCCEEE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC------CceEEEEEE--CCCCCCEEEEEeCCCeEEE
Confidence 999999999998 8999999999999999999999888876510 016999999 889 999999999999999
Q ss_pred EECCCCCcceEEe-e---ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc---ccCcEEEEEEcCCCC
Q 014114 242 YDTSAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLP 314 (430)
Q Consensus 242 wd~~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~i~~s~~~~ 314 (430)
||+.+++ .+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+ ....+.++.|+ ++.
T Consensus 234 wd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 234 FDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG 310 (615)
T ss_dssp EETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred EECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence 9999866 46677 6 899999999999 9999999999999999999999999888865 24678888886 889
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 315 IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
++++++.|+.|++||+.+++.+.. +.+|.. .|.+++| |+ +++++.|+.|++|+..
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~--~~~~~~-~v~~~~~-~~--l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKT--ISGHNK-GITALTV-NP--LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEE--ECCCSS-CEEEEET-TT--TEEEETTSCEEETTTT
T ss_pred eEEEEECCCCEEEEECCCCcEEEE--EeCCCC-CEEEEEe-cC--cEEECCCCeEEEEEch
Confidence 999999999999999999888877 556644 4588888 77 7777777777777754
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-34 Score=271.66 Aligned_cols=270 Identities=14% Similarity=0.221 Sum_probs=221.7
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
....+++|+.||.|++||+.++ +....+.+|...+.+++ + ++++|++|+.||.|++||+.+++.+..+.
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~--~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQ--Y----DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEEE--C----CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCC-----eEEEEEcCCCCcEEEEE--E----CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 3457899999999999999886 66778888988855544 4 45799999999999999999999888887
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.|. ..+.++.+.+ +.+++++.||.+.+|++...... ........|...|.+++|
T Consensus 211 ~h~--------~~v~~l~~~~----------~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 211 HHC--------EAVLHLRFNN----------GMMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp CCC--------SCEEEEECCT----------TEEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEEEE--
T ss_pred CCC--------CcEEEEEEcC----------CEEEEeeCCCcEEEEeCCCCCCc------eeeeEecCCCCcEEEEEe--
Confidence 644 5788887732 38999999999999998753321 111223357788999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
++++|++|+.||.|++||+.+++.+..+..+. ..|.++.| +++++++|+.||.|++||+++++ ++.
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~g~~dg~i~iwd~~~~~-~~~ 330 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGA-CLR 330 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCC-EEE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCCCC-EEE
Confidence 67899999999999999999999999888765 66888888 57899999999999999999866 488
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe---------EEeEEeccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
.+.+|...|.+++| ++.+|++|+.||.|++||+.+++ ++..+.+| ...|++++| ++.+|++++.||
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSS
T ss_pred EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCC
Confidence 89999999999999 67899999999999999998766 78888888 899999999 788999999999
Q ss_pred eEEEEeCCCCceeeE
Q 014114 324 YLRFWDIKTRQLLSA 338 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~ 338 (430)
.|++||+.+......
T Consensus 406 ~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 406 TILIWDFLNDPAAQA 420 (435)
T ss_dssp EEEEEC---------
T ss_pred EEEEEECCCCCCccc
Confidence 999999988766554
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5e-34 Score=288.96 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=245.8
Q ss_pred hheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 41 VVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
....+.+|...+.++ +| +|+|++|++|+.||.|+|||+.+++.+..+..|. ..+.++.|.+...
T Consensus 5 ~~~~~~~h~~~v~~i--~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~---- 68 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGI--DF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--------TPVRAGKFIARKN---- 68 (814)
T ss_dssp CEEEEEEECSCEEEE--EE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEEEEEEEGGGT----
T ss_pred cceeeecCCCceEEE--EE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--------CcEEEEEEeCCCC----
Confidence 456677888885555 44 6788999999999999999999999888887654 6899999987554
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeee
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWT 199 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~ 199 (430)
.+++++.+|.+.+|++.... .+..+. .|...|.+++|+|++++|++++.||.|++||+.++ .....
T Consensus 69 ----~l~~~~~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 69 ----WIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp ----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred ----EEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 89999999999999986432 333443 47789999999999999999999999999999886 55666
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeee-cCCCeEEEEeeC--CCCEEEE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP--DSFNIYI 275 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~s~--~~~~l~~ 275 (430)
+..+. ..|.+++| +| ++..|++++.||.|++||+..+.. ...+.. +...+.+++|+| ++.+|++
T Consensus 136 ~~~~~---------~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 136 FEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EECCS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred EcCCC---------CcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 66654 67999999 77 788999999999999999988664 445544 448999999999 9999999
Q ss_pred EcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeec
Q 014114 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 276 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s 355 (430)
++.||.|++||+.+++.+..+.+| ...|.+++|+|++++|++++.||.|++||+.+++.+.. +..+. ..+++++|+
T Consensus 204 ~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~~~-~~v~~~~~~ 279 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--LNVGL-ERSWCIATH 279 (814)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE--ECCSS-SSEEEEEEC
T ss_pred EeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--eecCC-CcEEEEEEc
Confidence 999999999999999999999998 89999999999999999999999999999999998887 44553 346999999
Q ss_pred CCcc--eeeecCCCcEEEecCCC
Q 014114 356 DKEV--ANAAADAPMLEIQNGND 376 (430)
Q Consensus 356 ~~g~--~~~~~~d~~v~vw~~~~ 376 (430)
|+|. +++++.++.+.+|+...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 280 PTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp TTCGGGEEEEEETTEEEEEECSC
T ss_pred cCCCceEEEEEeCCCEEEEEcCC
Confidence 9987 36667778888888654
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-36 Score=276.13 Aligned_cols=244 Identities=9% Similarity=0.036 Sum_probs=188.9
Q ss_pred CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC--ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCce
Q 014114 48 PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
+...+. +++| +|++++|++|+.||.|+|||+.++ +.+..+..| ...|.++.+.+... .
T Consensus 10 ~~~~v~--~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h--------~~~v~~~~~s~~~~--------~ 69 (377)
T 3dwl_C 10 LPKPSY--EHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH--------DKIVTCVDWAPKSN--------R 69 (377)
T ss_dssp CSSCCS--CCEE--CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC--------SSCEEEEEECTTTC--------C
T ss_pred CCCcEE--EEEE--CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecC--------CceEEEEEEeCCCC--------E
Confidence 445544 4444 668889999999999999999887 566666554 36899999877444 8
Q ss_pred EEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCce---eeeecC
Q 014114 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKP 202 (430)
Q Consensus 126 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~ 202 (430)
|++++.|+.+++|++...... ..+.. ...|...|.+++|+|++++|++++.|+.|++||+.+++. ...+..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTW-----KQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp EEEEETTSSEEEC------CC-----CCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred EEEEeCCCeEEEEEcCCCCce-----eeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 999999999999998754300 11222 224778999999999999999999999999999998763 555554
Q ss_pred -CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC-----------------CcceEEeeecCCCeEEE
Q 014114 203 -PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAV 264 (430)
Q Consensus 203 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------------~~~~~~~~~~~~~i~~~ 264 (430)
|. ..|.+++| +|++++|++++.|+.|++||+... ..++..+ .|...|.++
T Consensus 144 ~h~---------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 144 PLR---------STILSLDW--HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp SCC---------SCEEEEEE--CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred ccC---------CCeEEEEE--cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 43 67999999 899999999999999999998631 1234455 889999999
Q ss_pred EeeCCCCEEEEEcCCCCEEEEEccCCeE----EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 265 AEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 265 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
+|+|++++|++++.|+.|++||+.+++. +..+.+| ...|.+++|+|++++|++++.|+.+ +|+..
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999999999999999877 7888888 8999999999999999999877766 66554
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-33 Score=267.36 Aligned_cols=292 Identities=12% Similarity=0.145 Sum_probs=229.7
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...+.+|...+ +.++.+ ++++|++|+.||.|++||+.+++.+..+.+|. ..|.++.+.+
T Consensus 114 ~~~l~~h~~~v-~~~~~~----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--------~~V~~l~~~~-------- 172 (464)
T 3v7d_B 114 RTTLRGHMTSV-ITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--------GGVWALKYAH-------- 172 (464)
T ss_dssp EEEEECCSSSC-EEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--------SCEEEEEECS--------
T ss_pred eEEEcCCCCCc-EEEEEE----CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--------cCEEEEEEcC--------
Confidence 34667787764 223444 34699999999999999999999988887654 6888888843
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc--CCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
++.+++++.||.+.+|++.... .+..+. .|...|.+++|+ +++.+|++|+.|+.|++||+.++.....
T Consensus 173 -~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 173 -GGILVSGSTDRTVRVWDIKKGC--------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp -TTEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--
T ss_pred -CCEEEEEeCCCCEEEEECCCCc--------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccc
Confidence 2289999999999999986432 344444 478899999998 5779999999999999999987654322
Q ss_pred ecCCCCCC--------------CCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEE
Q 014114 200 AKPPPKNS--------------LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA 265 (430)
Q Consensus 200 ~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 265 (430)
........ ....|...+.++. ++++++++++.|+.|++||+++++ ++..+.+|...|.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~ 317 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTI 317 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEE
Confidence 11100000 0001224455554 478999999999999999999855 5888899999999999
Q ss_pred eeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc
Q 014114 266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL 345 (430)
Q Consensus 266 ~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 345 (430)
|+|++++|++|+.|+.|++||+++++++..+.+| ...|.+++|+ +.+|++++.||.|++||+.+++..... +.
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----~~ 390 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----HH 390 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----EC
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----cC
Confidence 9999999999999999999999999999999998 8999999997 579999999999999999988776653 22
Q ss_pred ceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 346 NEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 346 ~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
...+..++|++++.+ ++++ |+.|++|+....
T Consensus 391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 334577899999999 5555 999999998764
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=262.76 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=214.1
Q ss_pred eEeecC---CCcEEEEEecCccCCcchhhee-cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc-eeeee
Q 014114 17 ALTFDS---LGLIKVIEARGEDGGVPKVVER-WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAI 91 (430)
Q Consensus 17 l~t~~~---dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~ 91 (430)
+++|+. ||.|+|||+.++ +.... ..+|...+..++++.+ .|++++|++|+.||.|++||+.+++ .+..+
T Consensus 34 ~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 107 (357)
T 3i2n_A 34 VTMGNFARGTGVIQLYEIQHG-----DLKLLREIEKAKPIKCGTFGAT-SLQQRYLATGDFGGNLHIWNLEAPEMPVYSV 107 (357)
T ss_dssp EEEEC--CCCEEEEEEEECSS-----SEEEEEEEEESSCEEEEECTTC-CTTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEecCccCCCcEEEEEeCCCC-----cccceeeecccCcEEEEEEcCC-CCCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence 445655 999999999874 32222 2256777555555442 1237899999999999999999887 77777
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec---cCCceEEE
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---ASGTIAFS 168 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~ 168 (430)
..|. ..+.++.+.+.-.. +..+..+++++.+|.+.+|++.... ..+..+... ....+.++
T Consensus 108 ~~~~--------~~v~~~~~~~~~~~--s~~~~~l~~~~~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 108 KGHK--------EIINAIDGIGGLGI--GEGAPEIVTGSRDGTVKVWDPRQKD-------DPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp CCCS--------SCEEEEEEESGGGC--C-CCCEEEEEETTSCEEEECTTSCS-------SCSEEECCCTTSCCCCEEEE
T ss_pred Eecc--------cceEEEeecccccc--CCCccEEEEEeCCCeEEEEeCCCCC-------CcceeccccCCCCCCceEEE
Confidence 6544 67888876531100 0134589999999999999987543 123333321 13478888
Q ss_pred E----EcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC---CCCEEEEEeCCCcEEE
Q 014114 169 K----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID---DHRKFVAGTNDHQVRL 241 (430)
Q Consensus 169 ~----~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~~ 241 (430)
+ |+|++++|++++.|+.|++||+.+++...... +. ..|.+++| +| ++.+|++++.||.|++
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~---------~~v~~~~~--~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IK---------NGVCSLEF--DRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CS---------SCEEEEEE--SCSSSSCCEEEEEESTTEEEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-CC---------CceEEEEc--CCCCCCCCEEEEECCCCeEEE
Confidence 8 78899999999999999999999988755433 22 66999999 78 8999999999999999
Q ss_pred EECCCCCcceEE-----eeecCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCC-------------------eEEeEE
Q 014114 242 YDTSAQRRPVMS-----FDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------KLLGCF 296 (430)
Q Consensus 242 wd~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~-------------------~~~~~~ 296 (430)
||+++++. ... +..|...|++++|+|+++ +|++++.||.|++||++++ +.+..+
T Consensus 239 ~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 239 FDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99987442 333 348999999999999998 8999999999999999854 467778
Q ss_pred eccccCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce
Q 014114 297 IGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 297 ~~~~~~~v~~i~~s~~~~~l~-s~~~d~~v~iwd~~~~~~ 335 (430)
.+| ...|++++|+|++++|+ +++.|+.|+|||+.+.+.
T Consensus 318 ~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 318 TLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 888 89999999999999998 899999999999987654
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.4e-34 Score=261.58 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=212.2
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecC--CCCcceEEEEeccCCCC-CCceEEEEccCCeEEEeccCCCceeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWG--DPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
..+++|+.||.|+|||+.++ .....+. +|...+..++ | +| ++++|++++.||.|++||+.+ +.+..+
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~~~--~--~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 156 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQ-----NKTSFIQGMGPGDAITGMK--F--NQFNTNQLFVSSIRGATTLRDFSG-SVIQVF 156 (383)
T ss_dssp TEEEEEEBTSCEEEEETTST-----TCEEEECCCSTTCBEEEEE--E--ETTEEEEEEEEETTTEEEEEETTS-CEEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCc-----ccceeeecCCcCCceeEEE--e--CCCCCCEEEEEeCCCEEEEEECCC-CceEEE
Confidence 46999999999999999874 3334443 5777755555 4 55 568999999999999999974 555555
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
..+. .+...+.++.+.+... .+++++.++.+.+|++.. ..+..+. .|...|.+++|+
T Consensus 157 ~~~~-----~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~i~d~~~---------~~~~~~~-~h~~~v~~~~~~ 213 (383)
T 3ei3_B 157 AKTD-----SWDYWYCCVDVSVSRQ--------MLATGDSTGRLLLLGLDG---------HEIFKEK-LHKAKVTHAEFN 213 (383)
T ss_dssp ECCC-----CSSCCEEEEEEETTTT--------EEEEEETTSEEEEEETTS---------CEEEEEE-CSSSCEEEEEEC
T ss_pred eccC-----CCCCCeEEEEECCCCC--------EEEEECCCCCEEEEECCC---------CEEEEec-cCCCcEEEEEEC
Confidence 5432 2335788888877444 999999999999999831 2344444 477899999999
Q ss_pred CCCC-EEEEecCCCeEEEEECCC----CceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECC
Q 014114 172 ISEK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 172 ~~~~-~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~ 245 (430)
|+++ +|++++.|+.|++||+.+ +..+..+. +. ..|.+++| +| ++.+|++++.|+.|++||++
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~---------~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HE---------KPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CS---------SCEEEEEE--CTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CC---------CceEEEEE--cCCCCCEEEEEcCCCcEEEEECC
Confidence 9998 999999999999999987 55555552 32 67999999 88 99999999999999999999
Q ss_pred CCCcceEEeeecC-----------------CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc-ccCcEEEE
Q 014114 246 AQRRPVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI 307 (430)
Q Consensus 246 ~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~i 307 (430)
+++. ...+..|. ..+..++|+|++++ +|+.|+.|++||+.+++++..+.++ +...+..+
T Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~ 358 (383)
T 3ei3_B 282 DWSK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN 358 (383)
T ss_dssp BTTS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE
T ss_pred CCcc-ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE
Confidence 8664 44444432 34455777777776 7789999999999999999999874 26778888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 308 ARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 308 ~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
+|+|++++|++++ |+.|+|||+++
T Consensus 359 ~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 359 KFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999997 99999999864
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-33 Score=263.42 Aligned_cols=267 Identities=15% Similarity=0.228 Sum_probs=221.5
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.+ ++++|++|+.||.|++||+.+++.+..+.+|. ..|.++.+ . +..+++++.||
T Consensus 136 v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--------~~v~~l~~--~--------~~~l~sg~~dg 193 (435)
T 1p22_A 136 VYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--------GSVLCLQY--D--------ERVIITGSSDS 193 (435)
T ss_dssp EEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--------SCEEEEEC--C--------SSEEEEEETTS
T ss_pred EEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--------CcEEEEEE--C--------CCEEEEEcCCC
Confidence 455555 56799999999999999999999988887654 67888877 2 23899999999
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee---eeecCCCCCCCCc
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGI 210 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~ 210 (430)
.+.+|++.... .+..+. .|...|.+++|++ .++++|+.||.|++||+.++... ..+..|.
T Consensus 194 ~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------ 256 (435)
T 1p22_A 194 TVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------ 256 (435)
T ss_dssp CEEEEESSSCC--------EEEEEC-CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS------
T ss_pred eEEEEECCCCc--------EEEEEc-CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC------
Confidence 99999986432 333333 4678899999974 69999999999999999887655 4445543
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
..|.++.| ++++|++++.||.|++||+++++ .+..+..|...|.+++|+ +++|++|+.||.|++||++++
T Consensus 257 ---~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 257 ---AAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ---SCEEEEEE----ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred ---CcEEEEEe----CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence 66899988 67899999999999999999866 588899999999999995 679999999999999999999
Q ss_pred eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------eeeEEeeccccceeEEEeeecCCcce-
Q 014114 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ---------LLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 291 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~---------~~~~~~~~~~~~~~i~~~~~s~~g~~- 360 (430)
+++..+.+| ...|.+++| ++.+|++|+.||.|++||+.+++ ++.. +.+|.. .|.+++| ++.+
T Consensus 327 ~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~h~~-~v~~l~~--~~~~l 398 (435)
T 1p22_A 327 ACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT--LVEHSG-RVFRLQF--DEFQI 398 (435)
T ss_dssp CEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE--ECCCSS-CCCCEEE--CSSCE
T ss_pred CEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheee--ccCCCC-CeEEEEe--CCCEE
Confidence 999999998 899999999 78899999999999999998766 6665 566744 4689999 5666
Q ss_pred eeecCCCcEEEecCCCC
Q 014114 361 NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 361 ~~~~~d~~v~vw~~~~~ 377 (430)
++++.||.|++|+....
T Consensus 399 ~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 399 VSSSHDDTILIWDFLND 415 (435)
T ss_dssp EECCSSSEEEEEC----
T ss_pred EEEeCCCEEEEEECCCC
Confidence 99999999999998763
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.4e-33 Score=258.30 Aligned_cols=270 Identities=17% Similarity=0.207 Sum_probs=223.6
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
++||+|. |++|+|||..+|+++..+..+. +...|.++.|.+... .|++|+.||.+.+|++....
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~------~~~~V~sv~fspdg~--------~lasgs~Dg~v~iWd~~~~~- 180 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQ------PGEYISSVAWIKEGN--------YLAVGTSSAEVQLWDVQQQK- 180 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCS------TTCCEEEEEECTTSS--------EEEEEETTSCEEEEETTTTE-
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecC------CCCcEEEEEECCCCC--------EEEEEECCCeEEEEEcCCCc-
Confidence 5677765 9999999999999888877532 346899999977444 99999999999999986432
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeecCCCCCCCCcccCcceeEeEEeeC
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.++.+. .|...+.+++++ +.+|++|+.|+.+++||.... ..+..+..|. ..+..+.| .
T Consensus 181 -------~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~---------~~~~~~~~--~ 239 (420)
T 4gga_A 181 -------RLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---------QEVCGLRW--A 239 (420)
T ss_dssp -------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEEE--C
T ss_pred -------EEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc---------cceeeeee--c
Confidence 444444 567788888774 689999999999999998764 4455666654 66888999 8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCc---ceEEeeecCCCeEEEEeeCCCC-EEEE--EcCCCCEEEEEccCCeEEeEEec
Q 014114 225 DDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSF-NIYI--GNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 225 ~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~-~l~~--~~~dg~v~iwd~~~~~~~~~~~~ 298 (430)
|++.++++++.|+.|++|+...++. .+.....|...|.+++|+|.+. ++++ |+.|+.|++||+.+++++..+..
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence 9999999999999999999987542 3566778899999999999764 4444 45899999999999999998887
Q ss_pred cccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 299 KCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 299 ~~~~~v~~i~~s~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+ ..+.++.|+|++..+++++ .|+.|+|||+.+++++.. +.+|.. .|++++|+|||.+ ++++.|++|+||+..
T Consensus 320 ~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 320 H--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp S--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred c--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--EcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 4 6799999999999988775 789999999999999988 778855 4699999999999 999999999999987
Q ss_pred CC
Q 014114 376 DT 377 (430)
Q Consensus 376 ~~ 377 (430)
..
T Consensus 395 ~~ 396 (420)
T 4gga_A 395 EL 396 (420)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 85
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=256.14 Aligned_cols=292 Identities=16% Similarity=0.127 Sum_probs=231.3
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-Ccee-eeeeecCCCCCCCCCCceEEEEeeccCcc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
+.+..+.+|...+.+++++.+. ++|++|++|+.||.|+|||+.+ ++.+ ..+..|. ..|.++.+.+...
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------~~v~~~~~~~~~~- 99 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--------GPVLDVCWSDDGS- 99 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--------SCEEEEEECTTSS-
T ss_pred ceeEeccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--------CCEEEEEECcCCC-
Confidence 4566778899997776665421 1268999999999999999987 5554 5555544 6899999877444
Q ss_pred ccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE--cCCCCEEEEecCCCeEEEEECCCCc
Q 014114 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~ 195 (430)
.|++++.||.+.+|++.... .+. ...|...|.+++| +|++++|++++.|+.|++||+.+++
T Consensus 100 -------~l~s~~~dg~v~iwd~~~~~--------~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 100 -------KVFTASCDKTAKMWDLSSNQ--------AIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp -------EEEEEETTSEEEEEETTTTE--------EEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred -------EEEEEcCCCcEEEEEcCCCC--------cee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 89999999999999986432 222 2357889999999 8999999999999999999999998
Q ss_pred eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee-ecCCCeEEEEeeCCCCE--
Q 014114 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFN-- 272 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~-- 272 (430)
.+..+..+ ..+.++.+ ....+++++.++.+.+|+++.......... .+...+.++++.++...
T Consensus 163 ~~~~~~~~----------~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 163 PMMVLQLP----------ERCYCADV----IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp CSEEEECS----------SCEEEEEE----ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred EEEEEecC----------CCceEEEe----cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence 88887765 34666666 345888899999999999987654333332 23456777777666554
Q ss_pred --EEEEcCCCCEEEEEccCC---eEEeEEeccccC------------cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 273 --IYIGNGSGDLASVDIRTG---KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 273 --l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~------------~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
+++++.|+.|++||++.. ..+..+..| .. .|++++|+|++++|++++.||.|++||+.++++
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 999999999999999887 557777776 44 799999999999999999999999999999999
Q ss_pred eeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 336 LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+.. +.+|. ..|.+++|+|+|.+ ++++.|+..+.|+...
T Consensus 308 ~~~--~~~~~-~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 308 LKT--SEQLD-QPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEE--CCCCS-SCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEE--ecCCC-CCceEEEECCCCCeEEEEecccccccccccC
Confidence 887 66664 44799999999999 8898888777666544
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=258.06 Aligned_cols=320 Identities=9% Similarity=0.038 Sum_probs=214.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheec-------------CCCCcceEEEEeccCCCC-CCceEEEEccCCeEEEe
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERW-------------GDPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDIL 80 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iw 80 (430)
..|++|+.||.|++||+.++ .....+ .+|...+..+++ +| ++.+|++++.||.|++|
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~s~~~d~~i~iw 127 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENS-----SRQSYYTCKAVCSIGRDHPDVHRYSVETVQW----YPHDTGMFTSSSFDKTLKVW 127 (408)
T ss_dssp CEEEEEETTSCEEEEECCCC-----SSSSCEEECEEEEECTTCTTCCSSCEEEEEE----CTTCTTCEEEEETTSEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCC-----cccceEeccccccccccccccCCCcEEEEEE----ccCCCcEEEEEeCCCeEEEe
Confidence 56899999999999999875 222222 247777555554 44 56789999999999999
Q ss_pred ccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec
Q 014114 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
|+.+++.+..+... ..+.++.+..... ....+++++.+|.+.+|++.... .+..+. .
T Consensus 128 d~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~ 184 (408)
T 4a11_B 128 DTNTLQTADVFNFE---------ETVYSHHMSPVST-----KHCLVAVGTRGPKVQLCDLKSGS--------CSHILQ-G 184 (408)
T ss_dssp ETTTTEEEEEEECS---------SCEEEEEECSSCS-----SCCEEEEEESSSSEEEEESSSSC--------CCEEEC-C
T ss_pred eCCCCccceeccCC---------CceeeeEeecCCC-----CCcEEEEEcCCCeEEEEeCCCcc--------eeeeec-C
Confidence 99998887777532 3567777766443 34589999999999999986432 233333 4
Q ss_pred cCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCc-eeeeecCCCCC------CCCcccCcceeEeEEeeCCCCCEEEE
Q 014114 161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (430)
|...|.+++|+|++. +|++++.||.|++||+.++. .+..+..+... .....+...|.+++| +|++++|++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~ 262 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF--TSDGLHLLT 262 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE--CTTSSEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE--cCCCCEEEE
Confidence 678999999999988 58899999999999998765 44444322111 111234578999999 899999999
Q ss_pred EeCCCcEEEEECCCCCcceEEeeec-----CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEE
Q 014114 233 GTNDHQVRLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307 (430)
Q Consensus 233 ~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i 307 (430)
++.|+.|++||+.+++. ...+..+ ...+........+..+++++.++.|++||+.+++++..+.+| ...|+++
T Consensus 263 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~ 340 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCC 340 (408)
T ss_dssp EETTSCEEEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEE
T ss_pred ecCCCeEEEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEE
Confidence 99999999999998664 2222211 112222222344567777788999999999999999999998 8999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 308 ~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+|+|++++|++++.||.|++||+.+++.+... .... ....+.+.... .+.+.++.+++|+.+.
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLYEPVPDD--DETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCCCccCCC--CceE----eccccccccceeecccCccCceeecCCcc
Confidence 99999999999999999999999999887653 2221 11233333322 6777889999997653
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.9e-34 Score=266.86 Aligned_cols=281 Identities=14% Similarity=0.096 Sum_probs=205.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||.|+|||+..+. ......+.+|...+..++|++ .++.+|++|+.||+|+|||+.++.. ..+..+
T Consensus 133 ~~lasGs~dg~i~lWd~~~~~---~~~~~~~~gH~~~V~~l~f~p---~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~ 205 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFGIKD---KPTFIKGIGAGGSITGLKFNP---LNTNQFYASSMEGTTRLQDFKGNIL-RVFASS 205 (435)
T ss_dssp TCEEEEETTSCEEEECSSCCS---CCEEECCCSSSCCCCEEEECS---SCTTEEEEECSSSCEEEEETTSCEE-EEEECC
T ss_pred CEEEEEeCCCEEEEEECCCCC---ceeEEEccCCCCCEEEEEEeC---CCCCEEEEEeCCCEEEEeeccCCce-eEEecc
Confidence 358899999999999998641 122345667888877776653 1567999999999999999965543 333322
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
. .....+.++.+.+.. ..+++++.+|.+.+|++... .+..+. .|...|.+++|+|++
T Consensus 206 ~-----~~~~~~~~~~~~~~~--------~~l~~g~~dg~i~~wd~~~~---------~~~~~~-~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 206 D-----TINIWFCSLDVSASS--------RMVVTGDNVGNVILLNMDGK---------ELWNLR-MHKKKVTHVALNPCC 262 (435)
T ss_dssp S-----SCSCCCCCEEEETTT--------TEEEEECSSSBEEEEESSSC---------BCCCSB-CCSSCEEEEEECTTC
T ss_pred C-----CCCccEEEEEECCCC--------CEEEEEeCCCcEeeeccCcc---------eeEEEe-cccceEEeeeecCCC
Confidence 1 112345566665533 48999999999999997532 222222 467899999999987
Q ss_pred C-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014114 175 K-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 175 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 253 (430)
. +|++|+.|+.|++||+.+.+....+... ..|...|++++| +|++.+|++++.|+.|++||+.++.. ...
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~------~~h~~~v~~~~~--spdg~~l~s~~~D~~i~iwd~~~~~~-~~~ 333 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYS------LPHRHPVNAACF--SPDGARLLTTDQKSEIRVYSASQWDC-PLG 333 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBC------CBCSSCEEECCB--CTTSSEEEEEESSSCEEEEESSSSSS-EEE
T ss_pred ceEEEEecCcceeeEEecccccccceEEEe------eeccccccceeE--CCCCCeeEEEcCCCEEEEEECCCCcc-ceE
Confidence 5 7889999999999999876544333211 123477999999 89999999999999999999998764 444
Q ss_pred eeecCC------CeEEEEeeCCCCEEEEEc------------CCCCEEEEEccCCeEEeEEeccccCcEEEE-EEcCCCC
Q 014114 254 FDFRET------PIKAVAEEPDSFNIYIGN------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLP 314 (430)
Q Consensus 254 ~~~~~~------~i~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i-~~s~~~~ 314 (430)
+..|.. .+....|+|++.++++++ .++.|++||..+++.+..+..+|...|.++ +|+|+|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~ 413 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC
Confidence 444432 233456677776666654 335799999999999988876558889887 6999999
Q ss_pred EEEEEeCCCeEEEEeCCCCce
Q 014114 315 IIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 315 ~l~s~~~d~~v~iwd~~~~~~ 335 (430)
+|++|+ |+.|+||++++++.
T Consensus 414 ~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 414 TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEEC-SSEEEECCCC----
T ss_pred EEEEEc-CCcEEEEECCcCee
Confidence 999876 88999999998875
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8e-34 Score=254.74 Aligned_cols=252 Identities=10% Similarity=0.067 Sum_probs=192.3
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCccccc
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
..+.+|...+..+++ +|+|++|++|+.|++|+|||+.+++ .+..+.+|. +.|.++.|.+..
T Consensus 7 ~~~~~H~~~V~~v~~----s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--------~~V~~v~~~~~~----- 69 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQM----DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--------GPVWQVAWAHPM----- 69 (316)
T ss_dssp -------CCEEEEEE----CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS--------SCEEEEEECCGG-----
T ss_pred eecccccCeEEEeeE----cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC--------ccEEEEEeCCCC-----
Confidence 345678888666655 4578899999999999999998765 345566544 689988886431
Q ss_pred cCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCCce--
Q 014114 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK-- 196 (430)
Q Consensus 121 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~-- 196 (430)
.+..|++++.|+.+++|++..... ..+..+. .|...|.+++|+|+ +.+|++|+.|+.|++||+..+..
T Consensus 70 -~~~~l~s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 70 -YGNILASCSYDRKVIIWREENGTW------EKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp -GSSCEEEEETTSCEEEECCSSSCC------CEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred -CCCEEEEEECCCEEEEEECCCCcc------eEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 124899999999999999864210 1222222 47789999999997 78999999999999999987532
Q ss_pred -eeeecCCCCCCCCcccCcceeEeEEeeCCC-----------------CCEEEEEeCCCcEEEEECCCCC--cceEEeee
Q 014114 197 -IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-----------------HRKFVAGTNDHQVRLYDTSAQR--RPVMSFDF 256 (430)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~ 256 (430)
...+..| ...+.+++| +|+ +.+|++|+.|+.|++||++... .++..+.+
T Consensus 142 ~~~~~~~h---------~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 142 VKKINNAH---------TIGCNAVSW--APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp ECCBTTSS---------SSCBCCCEE--CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred eeeeeccc---------cCCcceEEE--ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 2223333 256888898 555 4689999999999999997542 34667889
Q ss_pred cCCCeEEEEeeCCC----CEEEEEcCCCCEEEEEccCC---e-EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 257 RETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 257 ~~~~i~~~~~s~~~----~~l~~~~~dg~v~iwd~~~~---~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
|...|.+++|+|++ .+|++++.|++|++||+.+. + ....+..| ...|++++|+|++++|++++.|+.|+||
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 99999999999986 78999999999999999762 1 22345556 8899999999999999999999999999
Q ss_pred eCC
Q 014114 329 DIK 331 (430)
Q Consensus 329 d~~ 331 (430)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 975
No 89
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.7e-33 Score=250.74 Aligned_cols=276 Identities=11% Similarity=0.062 Sum_probs=212.2
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc----eeeeeeecCCCCCCCCCCceEEEEeeccCcc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
...+.+|...+..+++ +|++++|++|+.||.|+|||+.++. .+..+..| ...|.++.+.+..
T Consensus 4 ~~~~~gH~~~v~~~~~----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~-- 69 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVY----DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH--------DSSIVAIDWASPE-- 69 (351)
T ss_dssp CCEECCCSSCEEEEEE----CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC--------SSCEEEEEECCGG--
T ss_pred cccCcccccceeEEEE----cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC--------CCcEEEEEEcCCC--
Confidence 3456678888655555 5678899999999999999998763 44444443 3689999987631
Q ss_pred ccccCCceEEEEccCCeeEEEEeeeecccccCC-cceeeEEeeccCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCC
Q 014114 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~-~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~ 194 (430)
++..+++++.||.+++|++.......... ...+..+. .|...|.+++|+|+ +++|++++.|+.|++||+.++
T Consensus 70 ----d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 70 ----YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp ----GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred ----CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence 12389999999999999997543211111 12233333 57789999999999 999999999999999999887
Q ss_pred ceeeeecCC----CCCCCCcccCcceeEeEEeeCCC---CCEEEEEeCCCcEEEEECCCCCc-ceEEeeecCCCeEEEEe
Q 014114 195 EKIWTAKPP----PKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAE 266 (430)
Q Consensus 195 ~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~ 266 (430)
+.+..+... ........+...+.+++| +|+ +.+|++++.++.+.+|+...+.. .+..+.+|...|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred HHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence 654433210 000001123467899999 676 88999999999998888776542 25667789999999999
Q ss_pred eCCC----CEEEEEcCCCCEEEEEccCC----------------------------------------------eEEeEE
Q 014114 267 EPDS----FNIYIGNGSGDLASVDIRTG----------------------------------------------KLLGCF 296 (430)
Q Consensus 267 s~~~----~~l~~~~~dg~v~iwd~~~~----------------------------------------------~~~~~~ 296 (430)
+|++ ++|++|+.||.|++||++.+ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 89999999999999999875 567777
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 297 ~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
.+| ...|++++|+|++++|++++.||.|+|||+.+++.+..+
T Consensus 303 ~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 303 DDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 887 899999999999999999999999999999988766653
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-33 Score=255.27 Aligned_cols=280 Identities=12% Similarity=0.054 Sum_probs=225.1
Q ss_pred cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc---eeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 45 WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
..+|...+..+++ +|++++|++++.||.|+||++.+++ ....+..| ...+.++.+.+
T Consensus 7 ~~~h~~~v~~~~~----s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~-------- 66 (342)
T 1yfq_A 7 EQAPKDYISDIKI----IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY--------KHPLLCCNFID-------- 66 (342)
T ss_dssp SSCCSSCEEEEEE----EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC--------SSCEEEEEEEE--------
T ss_pred ccCCCCcEEEEEE----cCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec--------CCceEEEEECC--------
Confidence 3468888655555 4577899999999999999998877 23333333 35788888875
Q ss_pred CCc-eEEEEccCCeeEEEEe-eeecccccCCcceeeEEeec--cCCceEEEEEcCCCCEEEEecCCCeEEEEECCC----
Q 014114 122 RSR-TLLTCTTKGKASMRSI-EVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---- 193 (430)
Q Consensus 122 ~~~-~~~~~~~~g~i~v~~~-~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---- 193 (430)
.+. .+++++.+|.+.+|++ .... ...+. . |...|.+++|+| +.+|++++.|+.|++||+.+
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~~---------~~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSPS---------FQALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSS---------EEECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred CCCcEEEEEcCCCeEEEEEeccCCc---------eEecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 345 7999999999999998 5432 22222 3 778999999999 99999999999999999986
Q ss_pred -----CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC-CCcc-eEEeeecCCCeEEEEe
Q 014114 194 -----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP-VMSFDFRETPIKAVAE 266 (430)
Q Consensus 194 -----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~-~~~~~~~~~~i~~~~~ 266 (430)
++.+..+. +...+.+++| +|++ +++++.|+.|++||++. +... ......|...+.+++|
T Consensus 136 ~~~~~~~~~~~~~----------~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 136 VIAVKNLNSNNTK----------VKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp CEEEEESCSSSSS----------SCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred cccccCCeeeEEe----------eCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 55554443 2367999999 6665 99999999999999997 5542 3344567889999999
Q ss_pred eC-CCCEEEEEcCCCCEEEEEccCC------eEEeEEeccccC---------cEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 267 EP-DSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 267 s~-~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~---------~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+| ++++|++++.||.|++|++... +....+..| .. .|.+++|+|++++|++++.||.|++||+
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 99 9999999999999999999887 777888877 44 9999999999999999999999999999
Q ss_pred CCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCc-EEEecC
Q 014114 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM-LEIQNG 374 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~-v~vw~~ 374 (430)
.+++.+.. +.+|....|.+++ |++.+ ++++.|+. .+.|..
T Consensus 281 ~~~~~~~~--~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 281 QTRKKIKN--FAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTTEEEEE--CCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred ccHhHhhh--hhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99999887 6666244468888 99998 99999998 666654
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-33 Score=259.94 Aligned_cols=281 Identities=15% Similarity=0.101 Sum_probs=216.7
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCC-CCceEEEEccCCeEEEeccCCCceeeeeeecC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAG 95 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 95 (430)
+++++.+|.|+||++... .........+.+|...+..+++ +| ++++|++|+.||.|+|||+.++........
T Consensus 50 ~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~~~~~----~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~-- 122 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVLDIAW----CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE-- 122 (402)
T ss_dssp EBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEEEEEE----CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS--
T ss_pred EEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEEEEEe----CCCCCCEEEEEeCCCeEEEEEccCCCCccccCC--
Confidence 345789999999999652 1122345567788888555554 55 678999999999999999977643221100
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC-
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE- 174 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~- 174 (430)
.+..+. .|...|.+++|+|++
T Consensus 123 ---------------------------------------------------------~~~~~~-~h~~~v~~~~~~p~~~ 144 (402)
T 2aq5_A 123 ---------------------------------------------------------PVITLE-GHTKRVGIVAWHPTAQ 144 (402)
T ss_dssp ---------------------------------------------------------CSEEEE-CCSSCEEEEEECSSBT
T ss_pred ---------------------------------------------------------ceEEec-CCCCeEEEEEECcCCC
Confidence 111112 466789999999997
Q ss_pred CEEEEecCCCeEEEEECCCCceeeee--cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
++|++++.|+.|++||+.+++.+..+ ..|. ..|.+++| +|++++|++++.|+.|++||+++++ .+.
T Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~-~~~ 212 (402)
T 2aq5_A 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP---------DTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGT-VVA 212 (402)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECTTTCC---------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTE-EEE
T ss_pred CEEEEEcCCCEEEEEECCCCCccEEEecCCCC---------CceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCc-eee
Confidence 69999999999999999999998888 5554 67999999 8999999999999999999999865 466
Q ss_pred Ee-eecCCC-eEEEEeeCCCCEEEEE---cCCCCEEEEEccCCeE-EeEEeccccCcEEEEEEcCCCCEEEE-EeCCCeE
Q 014114 253 SF-DFRETP-IKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSYL 325 (430)
Q Consensus 253 ~~-~~~~~~-i~~~~~s~~~~~l~~~---~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~s-~~~d~~v 325 (430)
.+ ..|... +.+++|+|++++|++| +.|+.|++||+++++. +......+...+.+++|+|++++|++ ++.|+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 66 677765 8999999999999999 7999999999988664 33333223778999999999999865 5579999
Q ss_pred EEEeCCCCce-eeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 326 RFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 326 ~iwd~~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
++||+.+++. +..+....+ ...+.+++|+|++.++++ .++.+++|+...
T Consensus 293 ~i~d~~~~~~~~~~l~~~~~-~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFSS-KESQRGMGYMPKRGLEVN-KCEIARFYKLHE 342 (402)
T ss_dssp EEEEECSSTTCEEEEEEECC-SSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred EEEEecCCCcceEeeccccc-CCcccceEEeccccccee-cceeEEEEEcCC
Confidence 9999999884 444322222 345799999999998443 455999999865
No 92
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-32 Score=258.00 Aligned_cols=282 Identities=13% Similarity=0.210 Sum_probs=233.8
Q ss_pred heecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccccc
Q 014114 42 VERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...+.+|...+. .++.+ +|++|++|+.||.|++||+.+++.+..+.+|. ..|.++.+..
T Consensus 111 ~~~l~~h~~~v~-~~~~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--------~~v~~~~~~~-------- 169 (445)
T 2ovr_B 111 PKVLKGHDDHVI-TCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--------GGVWSSQMRD-------- 169 (445)
T ss_dssp CEEEECSTTSCE-EEEEE----ETTEEEEEETTSCEEEEETTTCCEEEECCCCS--------SCEEEEEEET--------
T ss_pred eEEecccCCCcE-EEEEE----cCCEEEEEECCCcEEEEECCCCcEEEEEcCCC--------CCEEEEEecC--------
Confidence 455677877642 23444 46799999999999999999999888887654 6788887742
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
..+++++.||.+++|++.... .+..+. .|...|.+++|+ ++.+++|+.||.|++||+.+++.+..+.
T Consensus 170 --~~l~s~~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 236 (445)
T 2ovr_B 170 --NIIISGSTDRTLKVWNAETGE--------CIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM 236 (445)
T ss_dssp --TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred --CEEEEEeCCCeEEEEECCcCc--------EEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 389999999999999986432 333333 567889999995 5789999999999999999999998887
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 281 (430)
.+. ..|.++.| ++.++++++.|+.|++||+++++ ++..+.+|...|.+++| ++.+|++|+.|+.
T Consensus 237 ~~~---------~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 237 GHV---------AAVRCVQY----DGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300 (445)
T ss_dssp CCS---------SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred CCc---------ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCe
Confidence 765 67899988 67899999999999999999855 58888899999999999 7889999999999
Q ss_pred EEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-
Q 014114 282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~- 360 (430)
|++||+++++.+..+.+| ...+.++.+ ++.+|++++.||.|++||+++++.+..+.........|.+++|+ +.+
T Consensus 301 i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGH-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp EEEEETTTCCEEEEECCC-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred EEEEECCCCCEEEEEcCC-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 999999999999999998 889998888 56799999999999999999999988853222224457999996 456
Q ss_pred eeecCCCcEEEecCCCCC
Q 014114 361 NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 361 ~~~~~d~~v~vw~~~~~~ 378 (430)
++++.||.|++|+.....
T Consensus 376 ~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEEETTSEEEEEETTTCC
T ss_pred EEEeCCCeEEEEECCCCc
Confidence 999999999999987643
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.5e-33 Score=253.29 Aligned_cols=274 Identities=9% Similarity=0.044 Sum_probs=195.8
Q ss_pred cEEEEEecCccCCcchhh-----eecCCCCcceEEEEeccCCCCCCceEEEE-----------ccCCeEEEeccCCCcee
Q 014114 25 LIKVIEARGEDGGVPKVV-----ERWGDPHSSKCVLAASIDDSQNDPLLAVA-----------RKNGLTDILNPLNGDLR 88 (430)
Q Consensus 25 ~i~vw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~g~~l~~g-----------~~dg~i~iwd~~~~~~~ 88 (430)
.|++|++........... ..+..|+..+.++ ++ +++.+++| +.|+.|++|++......
T Consensus 44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~--~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~ 117 (365)
T 4h5i_A 44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAI--DA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ 117 (365)
T ss_dssp EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEE--EE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE
T ss_pred EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEE--Ee----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCce
Confidence 599999986422111111 2345566664444 33 22345554 56788999988665432
Q ss_pred -eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEE--EEccCCeeEEEEeeeecccccCCcceeeEEeeccCCce
Q 014114 89 -VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL--TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 89 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
.................+.++++.+... .++ +++.|+.++||++.... . ++.+.|...|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~v~fSpDg~--------~la~as~~~d~~i~iwd~~~~~--------~--~~~~~~~~~V 179 (365)
T 4h5i_A 118 LEFLTSVDFDASTNADDYTKLVYISREGT--------VAAIASSKVPAIMRIIDPSDLT--------E--KFEIETRGEV 179 (365)
T ss_dssp EEEEEEECSSCCCCTTCCEEEEEECTTSS--------CEEEEESCSSCEEEEEETTTTE--------E--EEEEECSSCC
T ss_pred EEEeeeeceeecCCcccCEEEEEEcCCCC--------EEEEEECCCCCEEEEeECCCCc--------E--EEEeCCCCce
Confidence 2222222122223445677777765333 554 44578999999976422 2 2344577889
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC----cEEE
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~~ 241 (430)
.+++|+|++++|++++.+ .+.+|+..+++.+....... +...|.+++| +|++.++++++.|+ .+++
T Consensus 180 ~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~f--spdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 180 KDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFD-------KNWSLSKINF--IADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp CEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCC-------TTEEEEEEEE--EETTEEEEEEEESSSCCEEEEE
T ss_pred EEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCC-------CCCCEEEEEE--cCCCCEEEEEecCCcceeEEee
Confidence 999999999999999865 57777777776654332211 2267999999 78999999999887 6888
Q ss_pred EECCCCCcc---eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE-eccccCcEEEEEEcCCCCEEE
Q 014114 242 YDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 242 wd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~ 317 (430)
|++...... ...+..|..+|++++|+|+|++||+|+.|+.|+|||+++++++..+ .+| ...|++|+|+|||++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEE
Confidence 998764421 3456778899999999999999999999999999999999999886 566 99999999999999999
Q ss_pred EEeCCCeEEEEeCCCC
Q 014114 318 SCGLDSYLRFWDIKTR 333 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~ 333 (430)
+++.|++|+|||+...
T Consensus 329 S~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 329 SVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSEEEEEECCTT
T ss_pred EEeCCCeEEEEEcCCC
Confidence 9999999999999643
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-33 Score=253.12 Aligned_cols=246 Identities=13% Similarity=0.123 Sum_probs=196.6
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--CCCEEE
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSL 178 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~ 178 (430)
+|.+.|.++.+.+... .|++++.|+.+++|++..... ..+..+. .|...|.+++|++ ++++|+
T Consensus 11 ~H~~~V~~v~~s~~g~--------~lasgs~D~~v~lwd~~~~~~------~~~~~l~-gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT--------RLATCSSDRSVKIFDVRNGGQ------ILIADLR-GHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ---CCEEEEEECGGGC--------EEEEEETTTEEEEEEEETTEE------EEEEEEE-CCSSCEEEEEECCGGGSSCEE
T ss_pred cccCeEEEeeEcCCCC--------EEEEEeCCCeEEEEEecCCCc------EEEEEEc-CCCccEEEEEeCCCCCCCEEE
Confidence 4557899999876443 899999999999999864221 1223333 5788999999986 489999
Q ss_pred EecCCCeEEEEECCCCc--eeeeecCCCCCCCCcccCcceeEeEEeeCCC--CCEEEEEeCCCcEEEEECCCCCc--ceE
Q 014114 179 FGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR--PVM 252 (430)
Q Consensus 179 ~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~--~~~ 252 (430)
+|+.|++|++||+.++. .+..+..|. ..|.+++| +|+ +.+|++++.|+.|++||++.... ...
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~---------~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHD---------SSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCS---------SCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCC---------CceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence 99999999999998863 555666554 67999999 666 78999999999999999987532 134
Q ss_pred EeeecCCCeEEEEeeCC-----------------CCEEEEEcCCCCEEEEEccCC---eEEeEEeccccCcEEEEEEcCC
Q 014114 253 SFDFRETPIKAVAEEPD-----------------SFNIYIGNGSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~-----------------~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
.+.+|...|.+++|+|+ +++|++|+.|+.|++||++.. +++..+.+| ...|++++|+|+
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~ 223 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPS 223 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCC
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecCC
Confidence 45678889999999997 478999999999999999755 467778888 899999999998
Q ss_pred C----CEEEEEeCCCeEEEEeCCCC---ce-eeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 313 L----PIIASCGLDSYLRFWDIKTR---QL-LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 313 ~----~~l~s~~~d~~v~iwd~~~~---~~-~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+ .+|++++.|++|+||++.+. +. ... +..| ...|++++|+|+|.+ ++++.|+.|++|+...
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~--~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL--LHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE--EEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhh--hhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 6 78999999999999999763 11 122 3345 445799999999999 8999999999998753
No 95
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=254.86 Aligned_cols=273 Identities=7% Similarity=0.014 Sum_probs=208.4
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
.+++.+|++|+.||.|++||+.+++.+..+.. ..+.++.+.+ .+++++.|+.+++|+..
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~~~-----------~~~s~s~D~~i~~w~~~ 103 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGEHP-----------AIISRGPCNRLLLLYPG 103 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCCCC-----------SEEEECSTTEEEEEETT
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeeeCC-----------ceEEecCCCeEEEEEcc
Confidence 56778999999999999999999988877753 1222222221 28999999999999875
Q ss_pred eecccccC-CcceeeEEeeccCCceEEEEEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeE
Q 014114 142 VTKVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 142 ~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
.....-.. ....++.+...|...|.+++|+| ++++|++++.||.|++||+.+++.+.....+. ...+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~ 175 (343)
T 3lrv_A 104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSS 175 (343)
T ss_dssp TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCE
T ss_pred CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEE
Confidence 32211000 11235555556678899999999 99999999999999999999998866554332 145899
Q ss_pred eEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe
Q 014114 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 297 (430)
++| +|++.+|++|+.||.|++||+++++.....+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+.
T Consensus 176 ~~~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 176 GVL--HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEE--CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred EEE--CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence 999 899999999999999999999997754377887 999999999999999999999 5599999999887665544
Q ss_pred c---cccCcE--EEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEEeeccccceeEEEeeecC---Ccce-eeecCCC
Q 014114 298 G---KCSGSI--RSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD---KEVA-NAAADAP 367 (430)
Q Consensus 298 ~---~~~~~v--~~i~~s~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~-~~~~~d~ 367 (430)
. | ...+ .+++|+|++++|++++. |+.|+||++........ . ..+..++|.+ ++.. ++++.|+
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 253 TYTIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT--K-----DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE--E-----EEEEECCC----CCCCEEEEEEETT
T ss_pred ccccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE--e-----cCceeEecCccccccceeEEEecCC
Confidence 3 2 3333 36999999999999998 99999999976655443 1 2357788888 7777 7888888
Q ss_pred cEEEecC
Q 014114 368 MLEIQNG 374 (430)
Q Consensus 368 ~v~vw~~ 374 (430)
.+.++-.
T Consensus 325 ~~~~~~~ 331 (343)
T 3lrv_A 325 GIAAILK 331 (343)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 8887643
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=239.95 Aligned_cols=273 Identities=18% Similarity=0.214 Sum_probs=218.8
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
++++ +||+| .|++|+|||+.+++++..+..+. +...|.++.+.+... .+++++.||.+++|++.
T Consensus 34 S~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~------~~~~V~~v~~~~~~~--------~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 34 SSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQ------PGEYISSVAWIKEGN--------YLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCS------TTCCEEEEEECTTSS--------EEEEEETTSEEEEEETT
T ss_pred CCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecC------CCCeEEEEEECCCCC--------EEEEEECCCcEEEeecC
Confidence 4443 67666 59999999999999988887632 345799999887554 99999999999999986
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCcceeEeE
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
... .++.+. .|...+.++.+ ++..+++++.++.+++|+..... .+..+..|. ..+..+.
T Consensus 98 ~~~--------~~~~~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 157 (318)
T 4ggc_A 98 QQK--------RLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---------QEVCGLR 157 (318)
T ss_dssp TTE--------EEEEEE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEE
T ss_pred Cce--------eEEEec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCcc---------CceEEEE
Confidence 432 344443 45566665544 56899999999999999998754 445555554 6688899
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEECCCCCc---ceEEeeecCCCeEEEEeeCCCCEE---EEEcCCCCEEEEEccCCeEEe
Q 014114 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNI---YIGNGSGDLASVDIRTGKLLG 294 (430)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~v~iwd~~~~~~~~ 294 (430)
+ .+++++|++++.|+.|++||+++++. .......+...|.+++++|++..+ ++++.++.|++||........
T Consensus 158 ~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 158 W--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp E--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred E--cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 9 88999999999999999999987543 244556678899999999977543 466788999999999888776
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEE
Q 014114 295 CFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI 371 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~s~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~v 371 (430)
.... ...+..+.|+|++..+++++ .|+.|+|||+.+++++.. +.+|.+ .|++++|+|+|.+ ++++.|++|+|
T Consensus 236 ~~~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--l~gH~~-~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 236 AVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTS-RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCCSS-CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--EcCCCC-CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 6554 67899999999999887765 799999999999999998 778854 4699999999999 99999999999
Q ss_pred ecCCCC
Q 014114 372 QNGNDT 377 (430)
Q Consensus 372 w~~~~~ 377 (430)
|+..+.
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 998653
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=267.13 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=216.4
Q ss_pred cceEeecCCCcEEEEEecCccCCc-chhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC---CCceeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGV-PKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~---~~~~~~~ 90 (430)
..|++|+.||.|+|||+...+.+. ......+ .|...+..+ ++ +|++++|++|+.||.|++||+. +++.+..
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~--~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 151 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQI--TM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF 151 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEE--EE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEE--EE--eCCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence 478999999999999998622111 1222333 377775544 44 5678899999999999999994 6666555
Q ss_pred eeecC--CCCCCC--CCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec-cCCce
Q 014114 91 ISNAG--DSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTI 165 (430)
Q Consensus 91 ~~~~~--~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i 165 (430)
...+. ...+.+ +...+.++.+.... .+..+++++.+|.+.+|++.... .+..+... |...|
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v 217 (437)
T 3gre_A 152 LNCECIRKINLKNFGKNEYAVRMRAFVNE------EKSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAV 217 (437)
T ss_dssp EEEEEEEEEEGGGGSSCCCEEEEEEEECS------SCEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCE
T ss_pred cccceeEEEEccCcccccCceEEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCce
Confidence 54421 111112 34566666644321 23489999999999999986432 44444432 67899
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec-CCCCCCCCcccCcceeEeEEee--CCCCCEEEEEeCCCcEEEE
Q 014114 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~~w 242 (430)
.+++|+|++++|++|+.||.|++||+++++.+..+. .+. ..|.+++|.+ ++++.+|++++.|+.|++|
T Consensus 218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH---------APITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC---------EEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC---------CceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 999999999999999999999999999999888775 332 5689997743 3678899999999999999
Q ss_pred ECCCCCcceEEeee--------------------------cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE
Q 014114 243 DTSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 243 d~~~~~~~~~~~~~--------------------------~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 296 (430)
|+++++. +..+.. |...|++++|+ ++++|++|+.|+.|++||+.+++.+..+
T Consensus 289 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 289 NFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp ETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 9998653 555543 44568889999 7789999999999999999998877777
Q ss_pred ecc------------------------------------ccCcEEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 014114 297 IGK------------------------------------CSGSIRSIARHPT--LPIIASCGLDSYLRFWD 329 (430)
Q Consensus 297 ~~~------------------------------------~~~~v~~i~~s~~--~~~l~s~~~d~~v~iwd 329 (430)
.+| |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 653 4899999999998 78999999999999995
No 98
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-32 Score=245.40 Aligned_cols=235 Identities=15% Similarity=0.132 Sum_probs=185.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+|++|+.||.|+|||+.+. ..+.+..+.+|...+..++++. ..++++|++|+.||+|+|||+.+++..
T Consensus 22 ~~las~s~D~~v~iw~~~~~---~~~~~~~l~gH~~~V~~v~~s~--~~~g~~l~s~s~D~~v~iWd~~~~~~~------ 90 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVMIWKEENGRWS------ 90 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSS---CBCCCEEECCCSSCEEEEEECC--GGGCSEEEEEETTTEEEEEEBSSSCBC------
T ss_pred CEEEEEeCCCEEEEEecCCC---CcEEEEEEccccCCeEEEEecC--CCcCCEEEEEcCCCEEEEEEcCCCceE------
Confidence 57899999999999999742 1145678889999977776654 334789999999999999998654311
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
.+. .+ ..|...|.+++|+|+
T Consensus 91 ----------~~~------------------------------------------------~~-~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 91 ----------QIA------------------------------------------------VH-AVHSASVNSVQWAPHE 111 (297)
T ss_dssp ----------CCE------------------------------------------------EE-CCCSSCEEEEEECCGG
T ss_pred ----------EEE------------------------------------------------Ee-ecCCCceeEEEeCcCC
Confidence 000 00 024567889999997
Q ss_pred -CCEEEEecCCCeEEEEECCCCce--eeeecCCCCCCCCcccCcceeEeEEeeCCC-------------CCEEEEEeCCC
Q 014114 174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-------------HRKFVAGTNDH 237 (430)
Q Consensus 174 -~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~l~~~~~dg 237 (430)
+.+|++++.|+.|++||+.++.. ...+..|. ..|.+++| +|+ +++|++|+.|+
T Consensus 112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~---------~~v~~~~~--~p~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS---------SCEEEEEE--CCCC------------CCEEEEEETTS
T ss_pred CCcEEEEEECCCcEEEEEecCCCceeeeeeeccc---------CccceEee--cCCcccccccCCCCCCcceEEEEcCCC
Confidence 88999999999999999987532 23344443 66999999 665 57999999999
Q ss_pred cEEEEECCCCCc---ceEEeeecCCCeEEEEeeCCC---CEEEEEcCCCCEEEEEccCCe---EEeEE--eccccCcEEE
Q 014114 238 QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRS 306 (430)
Q Consensus 238 ~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~~---~~~~~--~~~~~~~v~~ 306 (430)
.|++||++.+.. ....+.+|...|.+++|+|++ .+|++++.|++|+|||+++.. ....+ ..| ...|.+
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~ 259 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR 259 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEE
Confidence 999999987542 355778899999999999984 899999999999999997643 11222 345 789999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
++|+|++++|++++.|+.|+||+..
T Consensus 260 ~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 260 ASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999999999999999999999976
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-34 Score=261.11 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=201.0
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc---eeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~ 91 (430)
..|++|+.||.|+|||+.++ .++....+.+|...+..+++ +|++++|++++.||.|+|||+.+++ ....+
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~----s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGN---GWKHARTFSDHDKIVTCVDW----APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp SEEECCCSSSCBCEEEEETT---EEEECCCBCCCSSCEEEEEE----CTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred CEEEEecCCCEEEEEEccCC---ceEEEEEEecCCceEEEEEE----eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 46888889999999999863 12356677788888555554 5678899999999999999998877 33333
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.. +...+.++.+.+... .+++++.|+.+++|++...... ..++.+...|...|.+++|+
T Consensus 97 ~~--------~~~~v~~~~~~~~~~--------~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 97 LR--------LNRAATFVRWSPNED--------KFAVGSGARVISVCYFEQENDW-----WVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp CC--------CSSCEEEEECCTTSS--------CCEEEESSSCEEECCC-----C-----CCCEEECSSCCSCEEEEEEC
T ss_pred cc--------cCCceEEEEECCCCC--------EEEEEecCCeEEEEEECCcccc-----eeeeEeecccCCCeEEEEEc
Confidence 33 346888888877444 8999999999999998754311 12334443378899999999
Q ss_pred CCCCEEEEecCCCeEEEEECCC------------------CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDK------------------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
|++++|++++.|+.|++||+.. ++.+..+ . |...|.+++| +|++++|+++
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~v~~~~~--sp~~~~l~~~ 223 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P---------SGGWVHAVGF--SPSGNALAYA 223 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C---------CSSSEEEEEE--CTTSSCEEEE
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c---------CCceEEEEEE--CCCCCEEEEE
Confidence 9999999999999999999863 3333333 3 3377999999 8999999999
Q ss_pred eCCCcEEEEECCCCCcc---eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe--E----------------
Q 014114 234 TNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--L---------------- 292 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~---------------- 292 (430)
+.|+.|++||+.+++.+ +..+..|..+|.+++|+|++++|++|+.++.+ +|+..... .
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT 302 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence 99999999999986642 56778899999999999999999998766655 77654211 0
Q ss_pred ------------E------eEEe----------------ccccCcEEEEEEcCCC-C---EEEEEeCCCeEEEEeC
Q 014114 293 ------------L------GCFI----------------GKCSGSIRSIARHPTL-P---IIASCGLDSYLRFWDI 330 (430)
Q Consensus 293 ------------~------~~~~----------------~~~~~~v~~i~~s~~~-~---~l~s~~~d~~v~iwd~ 330 (430)
+ ..+. .| ...|+++++.+.. . .|+|++.||.|+|||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 0111 15 8899999976643 3 6999999999999985
No 100
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=267.05 Aligned_cols=277 Identities=12% Similarity=0.085 Sum_probs=196.3
Q ss_pred CCCceEEEEccCCeEEEeccCCCceee----eeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRV----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
|++++|++++.|++|+|||+.+++... .+..+ .+.|..+.|.+..... .....|++++.||++++|
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~--------~~~V~~v~wsp~~~~~--~~~~~LAs~s~DgtvrlW 240 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS--------FGEVWDLKWHEGCHAP--HLVGCLSFVSQEGTINFL 240 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEEC--------CCSEEEEEECSSCCCS--SSSCEEEEEETTSCEEEE
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec--------CCcEEEEEECCCCCCC--CCCceEEEEecCCeEEEE
Confidence 445556667789999999998776432 23332 2478888887642100 123589999999999999
Q ss_pred Eeeeeccccc---CCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCc
Q 014114 139 SIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPT 214 (430)
Q Consensus 139 ~~~~~~~~~~---~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (430)
++........ ........+. .|...|.+++|+++ ..|++|+.||+|++||+.++. ....+..|. .
T Consensus 241 d~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~---------~ 309 (524)
T 2j04_B 241 EIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD---------S 309 (524)
T ss_dssp ECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSS---------S
T ss_pred EcCCCccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccc---------c
Confidence 9875431100 0011222232 46788999999985 489999999999999998764 334455554 6
Q ss_pred ceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCCcceEEeeecCC--CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe
Q 014114 215 WFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 215 ~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 291 (430)
.|.++++..+|++ .+|++++.|++|+|||+++++. ...+.+|.. .|.+++|+|+++.|++++.|++|++||++++.
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 7999942227787 8999999999999999998553 555666643 58899999999999999999999999999999
Q ss_pred EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee--ccccceeEEEeeecCCcceeee
Q 014114 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL--KQHLNEVVFDSAFADKEVANAA 363 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~~~~ 363 (430)
++..+.+| ...|++|+|+|++++|++|+.|++|++||+..+ .+....- ..+....++.++|+|+|..+..
T Consensus 389 ~~~~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~ 460 (524)
T 2j04_B 389 AVHPLVSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI 460 (524)
T ss_dssp CCEEEEEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE
T ss_pred cceeeecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc
Confidence 88889888 999999999999999999999999999998654 3222000 0111224689999999986433
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=250.97 Aligned_cols=261 Identities=12% Similarity=0.074 Sum_probs=204.8
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC--CCceeeeeeecCCCCCCCCCCceEEEEeeccCcc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
+++..+.+|...+..+++ +|++++|++|+.||.|+|||+. +++.+..+..|. ..|.++.|.+..
T Consensus 2 ~~~~~~~~h~~~v~~~~~----s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------~~v~~~~~~~~~-- 67 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVL----DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--------GPVWRVDWAHPK-- 67 (379)
T ss_dssp ---CCEEECCCCEEEEEE----CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--------SCEEEEEECCGG--
T ss_pred CccEEecCCcccEEEEEE----cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--------CcEEEEEeCCCC--
Confidence 345677889988655555 5678899999999999999997 455556665543 688889886541
Q ss_pred ccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCCc
Q 014114 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~ 195 (430)
.+..+++++.||.+++|++..... ..+..+ ..|...|.+++|+|+ +.+|++++.|+.|++||+.+..
T Consensus 68 ----~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 68 ----FGTILASCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp ----GCSEEEEEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred ----CCCEEEEeccCCEEEEEEcCCCce------eEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 134899999999999999875321 122222 246789999999998 9999999999999999998864
Q ss_pred e--eeeecCCCCCCCCcccCcceeEeEEeeCC-------------CCCEEEEEeCCCcEEEEECCCCCc---ceEEeeec
Q 014114 196 K--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFR 257 (430)
Q Consensus 196 ~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~ 257 (430)
. ...+..+. ..|.+++| +| ++.+|++++.|+.|++||++.+.. +...+..|
T Consensus 137 ~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 137 TTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp CCCEEEEECCT---------TCEEEEEE--CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred ceeeEEecCCC---------CceEEEEE--cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence 3 33333433 67999999 67 689999999999999999987543 34567789
Q ss_pred CCCeEEEEeeCC---CCEEEEEcCCCCEEEEEccCCe-----EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 014114 258 ETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329 (430)
Q Consensus 258 ~~~i~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd 329 (430)
...|.+++|+|+ +++|++++.||.|++||++++. .+.....| ...|++++|+|++++|++++.||.|++|+
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 999999999999 8999999999999999998863 22222234 88999999999999999999999999999
Q ss_pred CCCCceee
Q 014114 330 IKTRQLLS 337 (430)
Q Consensus 330 ~~~~~~~~ 337 (430)
+.......
T Consensus 285 ~~~~~~~~ 292 (379)
T 3jrp_A 285 ENLEGKWE 292 (379)
T ss_dssp EEETTEEE
T ss_pred CCCCCccc
Confidence 98654433
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2e-32 Score=249.71 Aligned_cols=287 Identities=11% Similarity=0.020 Sum_probs=202.6
Q ss_pred hhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCcccc
Q 014114 40 KVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+.+..+..|...+.+++| +|||++|++|+.+| ++||++.+++....... ..+..+.+.....
T Consensus 10 ~~~~~~~~h~~~V~~v~f----s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 71 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEF----NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLHRTN--- 71 (355)
T ss_dssp ---------CCCCCEEEE----CTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECTTSS---
T ss_pred CCccccccCCCceEEEEE----CCCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcCCCC---
Confidence 445566778888666655 56788999998776 78999887765544332 1233344443222
Q ss_pred ccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCC-ceee
Q 014114 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW 198 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 198 (430)
..+++++.++.+++|++.... .+..+ .+...|.+++++++. ++++ .++.|++||+.++ +.+.
T Consensus 72 ----~~~~~~~~d~~v~iWd~~~~~--------~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 72 ----YVAFVTGVKEVVHIWDDVKKQ--------DVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp ----EEEEECSSTTEEEEEETTTTE--------EEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS
T ss_pred ----EEEEEECCccEEEEEECCCCc--------EEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE
Confidence 244677888999999976432 33333 356789999998754 4433 4779999999887 5554
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE--EeCCCcEEEEECCCCC--------------cc-eEEeeecCCCe
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPI 261 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~wd~~~~~--------------~~-~~~~~~~~~~i 261 (430)
.+.. ....+++ ++ .++++ |+.||.|++||+.++. .+ +..+.+|...|
T Consensus 135 ~~~~------------~~~~~~~--s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 135 DDIR------------FGGVCEF--SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp CCEE------------EEEEEEE--ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred Eecc------------CCceEEE--Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence 4432 1334455 44 56666 5899999999998754 12 67889999999
Q ss_pred EEEEeeCCCCEEEEEcCCCC-EEEEEccCCeEEeEEe-ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 262 KAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
++++|+|++++|++|+.|++ |++||+++++++..+. +.|...|++++|+|++++|++++.|++|+|||+..+......
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~ 278 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH 278 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence 99999999999999999999 9999999999999998 523899999999999999999999999999999765321111
Q ss_pred e--------------------eccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 340 F--------------------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 340 ~--------------------~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
. +..........++|+++|.. ++++.||.+++|+....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 11111111256899999988 99999999999987653
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=246.31 Aligned_cols=255 Identities=13% Similarity=0.123 Sum_probs=205.5
Q ss_pred ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCce
Q 014114 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
+++..+.+|. ..|.++.+.+... .|++++.||.+.+|++..... ..+..+. .|...|
T Consensus 2 ~~~~~~~~h~--------~~v~~~~~s~~~~--------~l~~~~~dg~i~iw~~~~~~~------~~~~~~~-~h~~~v 58 (379)
T 3jrp_A 2 SMVVIANAHN--------ELIHDAVLDYYGK--------RLATCSSDKTIKIFEVEGETH------KLIDTLT-GHEGPV 58 (379)
T ss_dssp ---CCEEECC--------CCEEEEEECSSSS--------EEEEEETTSCEEEEEEETTEE------EEEEEEC-CCSSCE
T ss_pred CccEEecCCc--------ccEEEEEEcCCCC--------EEEEEECCCcEEEEecCCCcc------eeeeEec-CCCCcE
Confidence 3445555544 7899999876444 899999999999999862110 1233333 578899
Q ss_pred EEEEEcCC--CCEEEEecCCCeEEEEECCCCc--eeeeecCCCCCCCCcccCcceeEeEEeeCCC--CCEEEEEeCCCcE
Q 014114 166 AFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQV 239 (430)
Q Consensus 166 ~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i 239 (430)
.+++|+++ +++|++++.||.|++||+.+++ .+..+..+. ..|.+++| +|+ +.+|++++.|+.|
T Consensus 59 ~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~l~~~~~d~~i 127 (379)
T 3jrp_A 59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS---------ASVNSVQW--APHEYGPLLLVASSDGKV 127 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEE
T ss_pred EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC---------cceEEEEe--CCCCCCCEEEEecCCCcE
Confidence 99999976 8999999999999999999886 566666554 67999999 788 8999999999999
Q ss_pred EEEECCCCCc-ceEEeeecCCCeEEEEeeC-------------CCCEEEEEcCCCCEEEEEccCCe----EEeEEecccc
Q 014114 240 RLYDTSAQRR-PVMSFDFRETPIKAVAEEP-------------DSFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCS 301 (430)
Q Consensus 240 ~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~-------------~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~ 301 (430)
++||++.... ....+..|...|.+++|+| ++.+|++++.|+.|++||++++. .+..+.+| .
T Consensus 128 ~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-~ 206 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-S 206 (379)
T ss_dssp EEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-S
T ss_pred EEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-c
Confidence 9999987632 3456778999999999999 69999999999999999998764 45667777 8
Q ss_pred CcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCceeeEEe---eccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 302 GSIRSIARHPT---LPIIASCGLDSYLRFWDIKTRQLLSAVF---LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 302 ~~v~~i~~s~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
..|.+++|+|+ +.+|++++.||.|++||+.++....... ...+ ...+++++|+|+|.+ ++++.||.|++|+.
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 99999999999 8999999999999999999875222111 2224 445799999999999 88999999999998
Q ss_pred CC
Q 014114 375 ND 376 (430)
Q Consensus 375 ~~ 376 (430)
..
T Consensus 286 ~~ 287 (379)
T 3jrp_A 286 NL 287 (379)
T ss_dssp EE
T ss_pred CC
Confidence 74
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-31 Score=247.14 Aligned_cols=290 Identities=14% Similarity=0.112 Sum_probs=219.3
Q ss_pred ceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc---eeeeeeecCCC------------------------------
Q 014114 51 SKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGDS------------------------------ 97 (430)
Q Consensus 51 ~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~------------------------------ 97 (430)
++.++++ +|+|++|+++ .++.|++||+.+|+ .+..+..+...
T Consensus 6 p~~~v~~----s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 6 PLQNLLT----SRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCEEEE----CSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred cEEEEEe----cCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 3345554 5677755555 67899999999998 66665532210
Q ss_pred ----------------CCCCCCCceEEEEeeccCccccccCCceE-EEEccCCeeEEEEeeeecccccCCcceeeEEee-
Q 014114 98 ----------------GAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV- 159 (430)
Q Consensus 98 ----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~- 159 (430)
...++...|.++.+.+... .| ++++.||.+.+|++.... ...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--------~l~~~~~~dg~v~iwd~~~~~------~~~~~~~~~~ 146 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--------RLIACADSDKSLLVFDVDKTS------KNVLKLRKRF 146 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSS--------EEEEEEGGGTEEEEEEECSSS------SSCEEEEEEE
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCC--------EEEEEECCCCeEEEEECcCCC------Cceeeeeecc
Confidence 0012333688888876444 64 889999999999987211 123344432
Q ss_pred ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceee----eecCCCCCCCCcccCcceeEeEEeeCCC---CCEEEE
Q 014114 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVA 232 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~ 232 (430)
.+...|.+++|+|++++|++++.+|.|++|++.++.... .+..| ...|.+++| +|+ +++|++
T Consensus 147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h---------~~~v~~~~~--sp~~~~~~~l~s 215 (450)
T 2vdu_B 147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH---------VSMLTDVHL--IKDSDGHQFIIT 215 (450)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC---------SSCEEEEEE--EECTTSCEEEEE
T ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc---------cCceEEEEE--cCCCCCCcEEEE
Confidence 456889999999999999999999999999998776543 33333 367999999 778 889999
Q ss_pred EeCCCcEEEEECCCCCcceEE-eeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc------------
Q 014114 233 GTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------ 299 (430)
Q Consensus 233 ~~~dg~i~~wd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------ 299 (430)
++.|+.|++||+.+++. +.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+..+
T Consensus 216 ~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (450)
T 2vdu_B 216 SDRDEHIKISHYPQCFI-VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL 293 (450)
T ss_dssp EETTSCEEEEEESCTTC-EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSB
T ss_pred EcCCCcEEEEECCCCce-eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccc
Confidence 99999999999998664 444 66899999999999 9999999999999999999999988888642
Q ss_pred ------------ccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCC---ceeeEEeeccccceeEEEeeecCCccee
Q 014114 300 ------------CSGSIRSIARHPTLPIIASCG-LDSYLRFWDI--KTR---QLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 300 ------------~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~--~~~---~~~~~~~~~~~~~~~i~~~~~s~~g~~~ 361 (430)
....|.+++|+|++++|++++ .|+.|+||++ .++ +.+.. +..+ ..+.+++|+|++.++
T Consensus 294 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~--~~~~--~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 294 APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQI--ITFP--YNVISLSAHNDEFQV 369 (450)
T ss_dssp C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEE--EECS--SCEEEEEEETTEEEE
T ss_pred ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccE--eccC--CceEEEEecCCcEEE
Confidence 135799999999999999999 8999999999 555 55555 4444 346999999976665
Q ss_pred eecC-------CCcEEEecCCC
Q 014114 362 AAAD-------APMLEIQNGND 376 (430)
Q Consensus 362 ~~~~-------d~~v~vw~~~~ 376 (430)
+.+. +..|.+|..+.
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEET
T ss_pred EEecccCCCCCCcceEEEEEEc
Confidence 4433 55688887654
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.5e-31 Score=241.26 Aligned_cols=276 Identities=12% Similarity=0.057 Sum_probs=213.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCc-eEEEEccCCeEEEecc-CCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~-~~~~~~~~~~ 92 (430)
..|++++.||.|+||++..+.. . .....+..|...+..+++ +|+++ +|++|+.||.|++||+ .+++. ..+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~-~-~~~~~~~~~~~~v~~~~~----~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAK-N-VDLLQSLRYKHPLLCCNF----IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTT-E-EEEEEEEECSSCEEEEEE----EESSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred CEEEEEcCCCeEEEEEeCCCCc-c-ccceeeeecCCceEEEEE----CCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence 4589999999999999987410 0 013344467777555554 55788 9999999999999999 77765 3333
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccC-CcceeeEEeeccCCceEEEEEc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.. .+...|.++.+.+ .. .+++++.++.+.+|++......... ....+.. ..+...|.+++|+
T Consensus 97 ~~------~~~~~v~~l~~~~-~~--------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 97 NN------EANLGICRICKYG-DD--------KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTN 159 (342)
T ss_dssp SC------CCCSCEEEEEEET-TT--------EEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEEC
T ss_pred cc------CCCCceEEEEeCC-CC--------EEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEec
Confidence 30 1446888998876 44 8999999999999998741100000 0011222 2367889999999
Q ss_pred CCCCEEEEecCCCeEEEEECCC-Ccee--eeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCC
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDK-CEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~ 247 (430)
|++ +++++.++.|++||+.+ +... .....+ ...+.+++| +| ++++|++++.||.|++|+++..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~i~~i~~--~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL---------KYQIRDVAL--LPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSC---------SSCEEEEEE--CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCC---------CCceeEEEE--CCCCCCEEEEEecCCcEEEEEEcCC
Confidence 877 88999999999999988 5432 122222 256999999 88 9999999999999999999876
Q ss_pred -----CcceEEeeecCC---------CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC
Q 014114 248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 248 -----~~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
......+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+||...|++++ |++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 256788888865 9999999999999999999999999999999999999987689999999 999
Q ss_pred CEEEEEeCCCe-EEEEe
Q 014114 314 PIIASCGLDSY-LRFWD 329 (430)
Q Consensus 314 ~~l~s~~~d~~-v~iwd 329 (430)
++|++++.||. .+.|.
T Consensus 305 ~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEEECTHHHHCSS
T ss_pred CeEEEEecCCccccccc
Confidence 99999999998 55555
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.9e-30 Score=235.23 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=217.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceE-EEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++++.||.|++||+.++ +++..+..|.. +.++.+ +|+|++| ++++.|+.|++||+.+++.+..+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~~---~~~~~~--s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-----KVTATIPVGSN---PMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-----EEEEEEECSSS---EEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCC-----eEEEEeecCCC---cceEEE--CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence 45788999999999999876 56666665544 345555 7788876 6777999999999999998887765
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceE-EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+. .+.++.+.+... .+ +++..++.+.+|++.... .+... .+...+.+++|+|
T Consensus 73 ~~---------~v~~~~~spdg~--------~l~~~~~~~~~v~v~d~~~~~--------~~~~~--~~~~~~~~~~~s~ 125 (391)
T 1l0q_A 73 GS---------SPQGVAVSPDGK--------QVYVTNMASSTLSVIDTTSNT--------VAGTV--KTGKSPLGLALSP 125 (391)
T ss_dssp SS---------SEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTE--------EEEEE--ECSSSEEEEEECT
T ss_pred CC---------CccceEECCCCC--------EEEEEECCCCEEEEEECCCCe--------EEEEE--eCCCCcceEEECC
Confidence 32 677788766433 55 556677999999986432 23333 3456789999999
Q ss_pred CCCEE-EEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE-EEEeCCCcEEEEECCCCCcc
Q 014114 173 SEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 173 ~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~ 250 (430)
++++| ++++.++.|++||+.+++.+..+..+ ..+.+++| +|++++| ++++.++.|++||+++++ .
T Consensus 126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~dg~~l~~~~~~~~~v~~~d~~~~~-~ 192 (391)
T 1l0q_A 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNS-V 192 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTE-E
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCe-E
Confidence 99977 68888999999999999988877654 34688899 8999877 577789999999999864 3
Q ss_pred eEEeeecCCCeEEEEeeCCCCEEEEEc---CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE-EEEeCCCeEE
Q 014114 251 VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLR 326 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~d~~v~ 326 (430)
+..+. +...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|+
T Consensus 193 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEE
Confidence 44444 456889999999999999888 6899999999999999888875 358999999999877 6668899999
Q ss_pred EEeCCCCceeeEEe
Q 014114 327 FWDIKTRQLLSAVF 340 (430)
Q Consensus 327 iwd~~~~~~~~~~~ 340 (430)
+||+.+++.+..+.
T Consensus 270 v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 270 VIDTATNTITATMA 283 (391)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCCcEEEEEE
Confidence 99999999888753
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=251.02 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=210.7
Q ss_pred cceEeecCCCcEEEEEecCccC------CcchhheecCCCC------------cceEEEEeccCCCCCC--ceEEEEccC
Q 014114 15 LRALTFDSLGLIKVIEARGEDG------GVPKVVERWGDPH------------SSKCVLAASIDDSQND--PLLAVARKN 74 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~p~g--~~l~~g~~d 74 (430)
..|++|+.||.|+||++..+.. ...+....+.+|. ..+..+++ +|++ .+|++++.|
T Consensus 41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~----~~~~~~~~l~s~s~d 116 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW----LPQKNAAQFLLSTND 116 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE----CCCCSSSEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE----cCCCCcceEEEeCCC
Confidence 4689999999999999987421 1222466777887 66555555 4455 689999999
Q ss_pred CeEEEeccCCCceeeeeeecCC--------------------------------CCCCCCCCceEEEEeeccCccccccC
Q 014114 75 GLTDILNPLNGDLRVAISNAGD--------------------------------SGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
|.|++||+.+++.......... .....+...|.++.+.+...
T Consensus 117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------ 190 (447)
T 3dw8_B 117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE------ 190 (447)
T ss_dssp SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS------
T ss_pred CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC------
Confidence 9999999976544211000000 00124556788888876433
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEE------eeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCc
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW------NVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~ 195 (430)
.++++ .|+.+++|++.... ..+.++ ...|...|.+++|+|++ ++|++|+.||.|++||+.+++
T Consensus 191 --~l~s~-~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 191 --TYLSA-DDLRINLWHLEITD-------RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp --EEEEE-CSSEEEEEETTEEE-------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred --EEEEe-CCCeEEEEECCCCC-------ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 78887 89999999987432 122222 12467889999999998 999999999999999999887
Q ss_pred e----eeeecCCCCCCC---CcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC--------
Q 014114 196 K----IWTAKPPPKNSL---GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-------- 260 (430)
Q Consensus 196 ~----~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-------- 260 (430)
. +..+..+..... ...+...|.+++| +|++++|++++. +.|++||++....++..+..|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF--SHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEE--CTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEE--CCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 6 566666542100 0001127999999 899999999999 999999999744467788877532
Q ss_pred -------eEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc--------------------------------cc
Q 014114 261 -------IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CS 301 (430)
Q Consensus 261 -------i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------------------------~~ 301 (430)
+..++|+|++++|++|+.||.|++||+.+++.+. +..+ ..
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccC
Confidence 3349999999999999999999999999887653 2221 14
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..|..++|+|++.+|++++.++ +++|..+
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 5789999999999999998876 7788643
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-30 Score=237.30 Aligned_cols=248 Identities=18% Similarity=0.218 Sum_probs=201.9
Q ss_pred CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC--CCCEEE
Q 014114 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSL 178 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~ 178 (430)
+|.+.|.++.+.+... .|++++.||.+++|++...... ...+..+. .|...|.+++|+| ++++|+
T Consensus 9 gH~~~v~~~~~~~~~~--------~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR--------HVATCSSDQHIKVFKLDKDTSN----WELSDSWR-AHDSSIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCSSCEEEEEECSSSS--------EEEEEETTSEEEEEEECSSSCC----EEEEEEEE-CCSSCEEEEEECCGGGCSEEE
T ss_pred ccccceeEEEEcCCCC--------EEEEeeCCCeEEEEECCCCCCc----ceecceec-cCCCcEEEEEEcCCCCCCEEE
Confidence 4557899999977444 8999999999999998743211 01223333 5788999999999 599999
Q ss_pred EecCCCeEEEEECCCC---------ceeeeecCCCCCCCCcccCcceeEeEEeeCCC--CCEEEEEeCCCcEEEEECCCC
Q 014114 179 FGGKGVEVNVWDLDKC---------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 179 ~~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~ 247 (430)
+++.||.|++||+.++ +.+..+..+. ..|.+++| +|+ +.+|++++.|+.|++||++++
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK---------GSLYSVKF--APAHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTCEEEEEECSST
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccC---------CceeEEEE--cCCCCCcEEEEecCCCcEEEecCCCh
Confidence 9999999999999886 4456666554 67999999 788 999999999999999999876
Q ss_pred CcceEEee-------------ecCCCeEEEEeeCC---CCEEEEEcCCCCEEEEEccCCeE--EeEEeccccCcEEEEEE
Q 014114 248 RRPVMSFD-------------FRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 248 ~~~~~~~~-------------~~~~~i~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~ 309 (430)
+. +..+. .|...+.+++|+|+ +.+|++++.++.+.+|+...++. +..+.+| ...|++++|
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~ 222 (351)
T 3f3f_A 145 SD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRSISW 222 (351)
T ss_dssp TC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEEEEE
T ss_pred HH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeEEEE
Confidence 53 22221 46789999999997 89999999999998888877765 6677777 899999999
Q ss_pred cCCC----CEEEEEeCCCeEEEEeCCCC----------------------------------------------ceeeEE
Q 014114 310 HPTL----PIIASCGLDSYLRFWDIKTR----------------------------------------------QLLSAV 339 (430)
Q Consensus 310 s~~~----~~l~s~~~d~~v~iwd~~~~----------------------------------------------~~~~~~ 339 (430)
+|++ .+|++++.||.|++||++++ +.+..
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 301 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE- 301 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE-
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE-
Confidence 9998 89999999999999999875 33333
Q ss_pred eeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 340 FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 340 ~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
+.+|.. .|++++|+|++.+ ++++.|+.|++|+....
T Consensus 302 -~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 302 -HDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -ECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred -Eecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 556644 4799999999998 99999999999998864
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=264.32 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=200.8
Q ss_pred eecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccC
Q 014114 43 ERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..+.+|.+.+ .+++| +|+|++|++|+.||.|+|||+..+.. ..+
T Consensus 3 ~~l~gH~~~V--~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~------------- 46 (753)
T 3jro_A 3 VIANAHNELI--HDAVL--DYYGKRLATCSSDKTIKIFEVEGETH-------------------KLI------------- 46 (753)
T ss_dssp -----CCCCE--EEECC--CSSSCCEEEEETTTEEEEEEEETTEE-------------------EEE-------------
T ss_pred eecccCccee--EEEEE--CCCCCeEEEEECCCcEEEEecCCCCC-------------------ccc-------------
Confidence 4567788884 55555 67888999999999999999752210 000
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC--CCEEEEecCCCeEEEEECCCCc--eee
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE--KIW 198 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~--~~~ 198 (430)
..+. .|.+.|.+++|+|+ +++|++|+.||.|++||+.+++ .+.
T Consensus 47 --------------------------------~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 93 (753)
T 3jro_A 47 --------------------------------DTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93 (753)
T ss_dssp --------------------------------EEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred --------------------------------eecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc
Confidence 0011 35678899999987 8999999999999999999886 556
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCC--CCEEEEEeCCCcEEEEECCCCC-cceEEeeecCCCeEEEEeeC-------
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEP------- 268 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~s~------- 268 (430)
.+..|. ..|.+++| +|+ +.++++++.||.|++||++... .....+..|...|.+++|+|
T Consensus 94 ~~~~h~---------~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 94 VHAVHS---------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred cccCCC---------CCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 666554 67999999 788 9999999999999999998753 23556778999999999999
Q ss_pred ------CCCEEEEEcCCCCEEEEEccCC----eEEeEEeccccCcEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCce
Q 014114 269 ------DSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPT---LPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 269 ------~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~i~~s~~---~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
++.+|++|+.||.|++||++++ .+...+.+| ...|++++|+|+ +.+|++++.||.|++||+.+++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999887 566777887 899999999999 89999999999999999988742
Q ss_pred eeE---EeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 336 LSA---VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~---~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
... .....| ...+++++|+|+|.+ ++++.||.|++|+...
T Consensus 242 ~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 111 112234 445799999999999 9999999999999885
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.2e-30 Score=239.46 Aligned_cols=312 Identities=8% Similarity=-0.021 Sum_probs=231.9
Q ss_pred eecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCC
Q 014114 19 TFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 98 (430)
++..+|.++||.++.. .+..+.+..+..+... .++++ +|++.++++++.++.|++||+.+++.+..+... .
T Consensus 94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~---~~~~~--s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~ 164 (433)
T 3bws_A 94 RKPEELNEKLIALDKE-GITHRFISRFKTGFQP---KSVRF--IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE---K 164 (433)
T ss_dssp SSGGGGTTCEEECCBT-TCSEEEEEEEECSSCB---CCCEE--SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH---H
T ss_pred cccCCCceEEEEECCC-CCcceEEEEEcCCCCc---eEEEE--eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc---c
Confidence 4566776677766541 1112233344433322 24444 566778888889999999999988877543220 0
Q ss_pred CCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEE
Q 014114 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (430)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~ 178 (430)
...+...+.++.+.+.. ..+++++.++.+.+|++.... .+..+. .+...+.+++|+|++++++
T Consensus 165 ~~~~~~~v~~~~~~~~~--------~~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~ 227 (433)
T 3bws_A 165 YKKKLGFVETISIPEHN--------ELWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY 227 (433)
T ss_dssp HHTTCCEEEEEEEGGGT--------EEEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred ccccCCceeEEEEcCCC--------EEEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence 01234577778774433 388999999999999985322 333333 4667899999999999885
Q ss_pred -EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe--------CCCcEEEEECCCCCc
Q 014114 179 -FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR 249 (430)
Q Consensus 179 -~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~i~~wd~~~~~~ 249 (430)
+++.++.|++||+.+++.+..+..+ ..+.+++| +|++++|++++ .|+.|++||+.+++.
T Consensus 228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~ 295 (433)
T 3bws_A 228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLL--SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL 295 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEE--CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEE--cCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence 5558999999999999888777653 44889999 89999999888 588999999998642
Q ss_pred ceEEeeecCCCeEEEEeeCCCCEE-EEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC-------
Q 014114 250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------- 321 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~------- 321 (430)
+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.
T Consensus 296 -~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 296 -IDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp -EEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred -Eeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 4333 455688999999999755 6668999999999999998888763 678999999999999888876
Q ss_pred --------CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeec-CCCcEEEecCCC
Q 014114 322 --------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPMLEIQNGND 376 (430)
Q Consensus 322 --------d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~-~d~~v~vw~~~~ 376 (430)
||.|++||+.+++.+..+. .+ ..+.+++|+|+|.+ ++++ .|+.|++|+.+.
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWE--AG--NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEE--CS--SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccceEEEEEECCCCcEEEEec--CC--CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5799999999999888743 32 23699999999998 5554 599999998753
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.3e-30 Score=242.52 Aligned_cols=257 Identities=14% Similarity=0.141 Sum_probs=204.3
Q ss_pred cCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC----------CceeeeeeecCCCCCCCCCCceEEEEeecc
Q 014114 45 WGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
...|...+..++++.+ ++.+|++++.||.|+|||+.+ .+.+..+..|. ..+.++.|.+.
T Consensus 124 ~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--------~~v~~l~~~~~ 192 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--------KEGYGLSWNPN 192 (430)
T ss_dssp EEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--------SCCCCEEECTT
T ss_pred EEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--------CCeEEEEeCCC
Confidence 3457777766666542 256899999999999999976 45555555543 56777888663
Q ss_pred CccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCC
Q 014114 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK 193 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~ 193 (430)
.. +.|++++.+|.+.+|++........ .......+. .|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 193 ~~-------~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 193 LN-------GYLLSASDDHTICLWDINATPKEHR-VIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp ST-------TEEEEECTTSCEEEEETTSCCBGGG-EEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CC-------CeEEEEeCCCeEEEEeCCCCCCCCc-eeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 22 3899999999999999875321100 001123333 5778899999999 788999999999999999998
Q ss_pred C---ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCC
Q 014114 194 C---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD 269 (430)
Q Consensus 194 ~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~ 269 (430)
+ ..+..+..|. ..|++++| +|++. +|++|+.||.|++||++....++..+..|...|.+++|+|+
T Consensus 264 ~~~~~~~~~~~~~~---------~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 264 NNTSKPSHTVDAHT---------AEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp SCSSSCSEEEECCS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred CCCCcceeEeecCC---------CCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence 6 4555555543 67999999 78776 68899999999999999866678899999999999999999
Q ss_pred CC-EEEEEcCCCCEEEEEccC--------------CeEEeEEeccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q 014114 270 SF-NIYIGNGSGDLASVDIRT--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 270 ~~-~l~~~~~dg~v~iwd~~~--------------~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~iwd~~~~ 333 (430)
+. +|++++.|+.|+|||+.. .+++..+.+| ...|++++|+|+++ +|++++.||.|+||++...
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 85 689999999999999987 3667777787 88999999999998 8999999999999998754
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.1e-29 Score=221.74 Aligned_cols=270 Identities=9% Similarity=0.027 Sum_probs=187.2
Q ss_pred eEEEEccCCeEEEeccCCC---ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 67 LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
.++++ ....|++|+..++ +++.++..+. .+|..+.+.+.... -..++-+.-..-.|+.+.+.
T Consensus 56 ~~~~~-~~~~v~lw~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~------~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 56 CIITA-CEDVVSLWKALDAWQWEKLYTWHFAE--------VPVLQIVPVPDVYN------LVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEE-ESSEEEEEEESSSSBEEEEEEEECCS--------SCEEEECCCTTCCS------CEEEEECSSSEEEEEEECC-
T ss_pred EEEEe-ccceEEEcccCCCccceeeEEEeccC--------ceeEEEEEcCcccc------eeeeeeccccccceEEEEEC
Confidence 34455 4578999999998 7777777654 45665655543321 12333333344455555554
Q ss_pred cccccCCcceeeEEeec--cCCceEEEEEcCCCCEEEEec--CCCeEEEEEC-CCCceeeeecCCCCCCCCcccCcceeE
Q 014114 144 KVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGG--KGVEVNVWDL-DKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~--~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
++ |+.+..+.+. +...|.. + ++++++.+++ .|+.|++|++ .+++.+..+..+. ..+..
T Consensus 121 pd-----~~~~~~~l~s~g~~~~v~~--l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~---------~~v~~ 183 (356)
T 2w18_A 121 SD-----DESEKQVLLKSGNIKAVLG--L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP---------PEETI 183 (356)
T ss_dssp ----------CCEEEEEEEEEEEEEE--E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------CSSCE
T ss_pred CC-----ccccccEEEeCCCeEEEEe--c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------Cceee
Confidence 43 1222222222 1122333 2 4677777644 6999999999 4477777666554 55778
Q ss_pred eEEee-CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC---CCeEEEEeeCCCCEE------------EEEcCCCCE
Q 014114 219 AAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIKAVAEEPDSFNI------------YIGNGSGDL 282 (430)
Q Consensus 219 ~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l------------~~~~~dg~v 282 (430)
++|.+ +.++.+|++++.|++|+|||+.+++. +..+.+|. ..+.+++|+|+|.++ ++|+.|++|
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 88842 23789999999999999999999774 77887654 367788999999876 567889999
Q ss_pred EEEEccCCeEEeEEe-----ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC
Q 014114 283 ASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
++||..+++.+..+. +| ...+.+..+ ++.++++++.|++|+|||+.+++++.+ +.+|...++..++|+||
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t--L~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL--LPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE--ECCC--CCCCEEEECSS
T ss_pred EEEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE--ecCCCCCeEEEEEECCC
Confidence 999999999877652 44 555555555 488999999999999999999999998 67786666567899999
Q ss_pred cce-eeecCCCcEEEecC
Q 014114 358 EVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 358 g~~-~~~~~d~~v~vw~~ 374 (430)
|++ ++++.|++|+||+.
T Consensus 338 G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 338 DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCcEEEecC
Confidence 999 99999999999984
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=248.63 Aligned_cols=262 Identities=8% Similarity=0.021 Sum_probs=196.3
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.+++| +|||+++|+++.|++|+ |...++.+ .+| ...+.++.+.+.. .++
T Consensus 18 v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~gh--------~~~v~~V~FsPdg---------------~~~ 67 (588)
T 2j04_A 18 KNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---NCN--------SKNLFHVKEFPLE---------------FEN 67 (588)
T ss_dssp SCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---SSB--------GGGTEEEEEECCC---------------CCC
T ss_pred EEEEEE--CCCCCEEEEEcCCceee--ccccccee---cCC--------CccEEEEEECCCC---------------Ccc
Confidence 445555 78999999999999999 65444433 333 3577777775521 233
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
.+.+|+... ..+....+...|.+++|+|+|.+|++++.||.|++||... ++..+. +..... .
T Consensus 68 ~~~~~~~~~-----------~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~----~ 129 (588)
T 2j04_A 68 KLDFELAQQ-----------NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS----S 129 (588)
T ss_dssp TTTTSCCCS-----------SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST----T
T ss_pred eEEEEeCCC-----------ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc----c
Confidence 344443221 1122324467899999999999999999999999999654 444444 331100 1
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc------ceEEe----eecCCCeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
..+.+++| +|++++|++|+.||+|++||+..+.. .+..+ .+|...|.+++|+|+| +++++.|+.|+
T Consensus 130 ~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr 205 (588)
T 2j04_A 130 RTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF 205 (588)
T ss_dssp TCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred ccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence 35899999 99999999999999999999998542 24665 5577899999999999 88888999999
Q ss_pred EEEccCCeE---EeEEe-ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeee--cCC
Q 014114 284 SVDIRTGKL---LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF--ADK 357 (430)
Q Consensus 284 iwd~~~~~~---~~~~~-~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~--s~~ 357 (430)
+||+..+.. ..++. +| ...|.+++|+ +..|++++ ++.|++||+.+++.... ..+|... +..++| +||
T Consensus 206 lWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~--~~gh~~~-V~~va~~~s~d 278 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL--KTGSLEN-FHIIPLNHEKE 278 (588)
T ss_dssp EECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--ECSCCSC-CCEEEETTCSS
T ss_pred EEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--EcCCCce-EEEEEeeeCCC
Confidence 999987763 35675 55 7899999999 68899887 69999999998777443 2267444 699999 999
Q ss_pred cce-eeecCCCcEEEecCC
Q 014114 358 EVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 358 g~~-~~~~~d~~v~vw~~~ 375 (430)
+.. +++..+|. ++|..+
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 988 88888999 999876
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.3e-30 Score=237.01 Aligned_cols=277 Identities=9% Similarity=0.040 Sum_probs=208.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||.|+|||+.... ......+.+|...+..++ | +|++++|++++.||.|++||+.+++.+.. ..|
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~--~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~ 126 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSG---QTIPKAQQMHTGPVLDVC--W--SDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQH 126 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTS---CEEEEEEEECSSCEEEEE--E--CTTSSEEEEEETTSEEEEEETTTTEEEEE-EEC
T ss_pred eEEEEECCCCcEEEEEcCCCC---ceeEEEeccccCCEEEEE--E--CcCCCEEEEEcCCCcEEEEEcCCCCceee-ccc
Confidence 579999999999999998620 122356777888855544 4 66888999999999999999988886653 333
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+.++.+.... .+..+++++.||.+++|++.... .+..+. ....+.++.+. .
T Consensus 127 --------~~~v~~~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~--~~~~~~~~~~~--~ 180 (368)
T 3mmy_A 127 --------DAPVKTIHWIKAP------NYSCVMTGSWDKTLKFWDTRSSN--------PMMVLQ--LPERCYCADVI--Y 180 (368)
T ss_dssp --------SSCEEEEEEEECS------SCEEEEEEETTSEEEEECSSCSS--------CSEEEE--CSSCEEEEEEE--T
T ss_pred --------cCceEEEEEEeCC------CCCEEEEccCCCcEEEEECCCCc--------EEEEEe--cCCCceEEEec--C
Confidence 3578888884221 23489999999999999987533 333333 23456666665 4
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC--CEEEEEeCCCcEEEEECCCCC--cc
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQR--RP 250 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~--~~ 250 (430)
..+++++.++.+++|++.............. ...+.++.+...+.. ..+++++.|+.|++||++... ..
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPL-------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSC-------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccc-------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence 5788899999999999987655443322211 133555555323322 239999999999999999753 34
Q ss_pred eEEeeecCC------------CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEE
Q 014114 251 VMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 251 ~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s 318 (430)
...+..|.. +|.+++|+|++++|++++.||.|++||+.+++++..+..| ...|++++|+|++++|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTSSCEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCCCeEEE
Confidence 667777765 7999999999999999999999999999999999999988 899999999999999999
Q ss_pred EeCCCeEEEEeCCCC
Q 014114 319 CGLDSYLRFWDIKTR 333 (430)
Q Consensus 319 ~~~d~~v~iwd~~~~ 333 (430)
++.|+..+.|++.+.
T Consensus 333 ~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 333 ASSYDWSKGHEFYNP 347 (368)
T ss_dssp EECCCSTTCGGGCCT
T ss_pred EecccccccccccCC
Confidence 999886666655433
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=4.7e-30 Score=224.16 Aligned_cols=181 Identities=8% Similarity=-0.031 Sum_probs=134.6
Q ss_pred cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCC
Q 014114 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 207 (430)
.++.|++|++.... +.+.. ...|...+..++|++ ++.+|++++.|++|++||+.+++++.++..+...
T Consensus 155 ~d~~V~~~~~s~dG-------~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~- 225 (356)
T 2w18_A 155 SDQQVEVMTFAEDG-------GGKEN-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY- 225 (356)
T ss_dssp TTCEEEEEEECTTS-------CEEEE-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred CCCcEEEEEECCCC-------ceeee-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-
Confidence 36677777763211 11121 124566778888888 7799999999999999999999999999764321
Q ss_pred CCcccCcceeEeEEeeCCCCCEE------------EEEeCCCcEEEEECCCCCcceEEe-----eecCCCeEEEEeeCCC
Q 014114 208 LGIFTPTWFTSAAFLSIDDHRKF------------VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDS 270 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l------------~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~i~~~~~s~~~ 270 (430)
...+.+++| +|++.++ ++|+.|++|++||..+++. +..+ .+|...+.+..++ +
T Consensus 226 -----v~~v~~vaf--SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g 295 (356)
T 2w18_A 226 -----QASVCHKAY--SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--D 295 (356)
T ss_dssp ------CCCEEEEE--EETTEEEEEEC------------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--T
T ss_pred -----eeeeEEEEE--CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--C
Confidence 134677788 7788776 5688899999999998653 4443 2555555444443 7
Q ss_pred CEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 271 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
.++++|+.|++|+|||+.+++++.++.+|+...+.+++|+|||++|++|+.|++|+|||+
T Consensus 296 ~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 296 HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 799999999999999999999999999884444556999999999999999999999995
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=5.4e-30 Score=239.93 Aligned_cols=250 Identities=15% Similarity=0.193 Sum_probs=200.1
Q ss_pred CceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccccc--CCcceeeEEeeccCCceEEEEEcCCCC-EEEEe
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--SSCSTVKSWNVCASGTIAFSKVDISEK-FSLFG 180 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~~~ 180 (430)
+.|.++.+.+.. ...+++++.+|.|.+|++........ .....+..+. .|...|.+++|+|++. +|++|
T Consensus 129 ~~v~~l~~~p~~-------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 129 GEVNRARYMPQN-------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp SCCSEEEEETTE-------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEE
T ss_pred CcEEEEEECCCC-------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEE
Confidence 567778877632 23899999999999999875321110 1112333333 5778899999999988 99999
Q ss_pred cCCCeEEEEECCCCce-------eeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCC--cc
Q 014114 181 GKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQR--RP 250 (430)
Q Consensus 181 ~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~--~~ 250 (430)
+.||.|++||+.++.. ...+..| ...|.+++| +| ++.+|++++.|+.|++||++... .+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGH---------TAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCC---------SSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCC---------CCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 9999999999987432 2333333 367999999 67 67899999999999999999863 45
Q ss_pred eEEeeecCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccC-CeEEeEEeccccCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q 014114 251 VMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRF 327 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~i 327 (430)
+..+..|...|++++|+|++. +|++|+.||.|++||+++ ..++..+..| ...|++++|+|+++ +|++++.|+.|+|
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 778889999999999999987 688999999999999998 5678888888 89999999999985 6999999999999
Q ss_pred EeCCCC--------------ceeeEEeeccccceeEEEeeecCCcc-e-eeecCCCcEEEecCCC
Q 014114 328 WDIKTR--------------QLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGND 376 (430)
Q Consensus 328 wd~~~~--------------~~~~~~~~~~~~~~~i~~~~~s~~g~-~-~~~~~d~~v~vw~~~~ 376 (430)
||+... +.+.. +.+|. ..|.+++|+|++. + ++++.|+.|++|+...
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~--~~~h~-~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFI--HGGHT-AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEE--CCCCS-SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EeCCCCccccCccccccCCcceEEE--cCCCC-CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 999872 34443 55664 4469999999999 5 8999999999999865
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.5e-30 Score=234.85 Aligned_cols=261 Identities=8% Similarity=0.012 Sum_probs=194.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC---------CC
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL---------NG 85 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~---------~~ 85 (430)
..+++|+.||.|++||+.++ +.+..+. ... +.++.+ +|+ +++++.|++|++|+.. ++
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~--~~~--v~~~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDS-----KTITTIT--TPN--PRTGGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEETTEEEEEEESSS-----SCEEEEE--EEC--CCTTCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred CEEEEECCCCcEEEEECCCC-----cEEEEEe--cCC--ceeeee--CCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 56999999999999999875 4444443 122 233344 555 9999999999999765 33
Q ss_pred ceeeeeeecCCCCCCCCCCceEEEEeec--cCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC
Q 014114 86 DLRVAISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
+.+..+.. ++.+.+.++.+.+ ... .+++++.||.+++|++.... .+......+..
T Consensus 115 ~~~~~~~~-------~~~~~v~~~~~~~~~~~~--------~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~~ 171 (343)
T 3lrv_A 115 KVLREIEV-------DSANEIIYMYGHNEVNTE--------YFIWADNRGTIGFQSYEDDS--------QYIVHSAKSDV 171 (343)
T ss_dssp CEEEEEEC-------CCSSCEEEEECCC---CC--------EEEEEETTCCEEEEESSSSC--------EEEEECCCSSC
T ss_pred ceeEEeec-------CCCCCEEEEEcCCCCCCC--------EEEEEeCCCcEEEEECCCCc--------EEEEEecCCCC
Confidence 33333331 2335788888876 444 89999999999999987432 34444445566
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-eeecC-CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
.|.+++|+|++.+|++|+.||.|++||+.+++.+ ..+.. |. ..|.+++| +|++.+|++++ ++.|++
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~---------~~v~~l~f--s~~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE---------AKIKEVKF--ADNGYWMVVEC-DQTVVC 239 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT---------SCEEEEEE--CTTSSEEEEEE-SSBEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC---------CCEEEEEE--eCCCCEEEEEe-CCeEEE
Confidence 7999999999999999999999999999998877 66665 43 77999999 89999999999 559999
Q ss_pred EECCCCCcceEEee---ecCCCeE--EEEeeCCCCEEEEEcC-CCCEEEEEccCCeEEeEEeccccCcEEEEEEcC---C
Q 014114 242 YDTSAQRRPVMSFD---FRETPIK--AVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---T 312 (430)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~i~--~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~---~ 312 (430)
||++..+. +..+. .|...+. +++|+|++++|++++. |+.|++|++.+....... .++..++|.+ +
T Consensus 240 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 240 FDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTAD 313 (343)
T ss_dssp EETTSSTT-CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CC
T ss_pred EEcCCCCc-ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccc
Confidence 99998653 33332 2334444 6999999999999988 999999999765443332 4678889998 8
Q ss_pred CCEEEEEeCCCeEEEEeC
Q 014114 313 LPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 313 ~~~l~s~~~d~~v~iwd~ 330 (430)
...+++++.|+.++++-.
T Consensus 314 ~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp CCEEEEEEETTEEEEEEE
T ss_pred cceeEEEecCCceEEEEe
Confidence 889999999999998854
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.1e-28 Score=226.36 Aligned_cols=265 Identities=12% Similarity=0.073 Sum_probs=213.4
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceE-EEEccCCeeEEEEeeeec
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~v~~~~~~~ 144 (430)
.++++++.|+.|++||+.+++.+..+..+. .+.++.+.+... .+ ++++.++.+.+|++....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~--------~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS---------NPMGAVISPDGT--------KVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEEEEEECTTSS--------EEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC---------CcceEEECCCCC--------EEEEECCCCCeEEEEECCCCe
Confidence 357889999999999999999888877643 577788766433 44 677799999999975322
Q ss_pred ccccCCcceeeEEeeccCCceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+..+. ....+.+++|+|++++|+ +++.++.|++||+.+++.+..+..+ ..+.+++|
T Consensus 66 --------~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~-- 123 (391)
T 1l0q_A 66 --------VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL-- 123 (391)
T ss_dssp --------EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--
T ss_pred --------EEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEE--
Confidence 333333 345899999999999875 4556799999999999888777654 45789999
Q ss_pred CCCCCEE-EEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEE-EEEcCCCCEEEEEccCCeEEeEEecccc
Q 014114 224 IDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 224 ~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (430)
+|+++.| ++++.++.|++||+.+++ .+..+..+ ..+.+++|+|++++| ++++.++.|++||+++++.+..+.. .
T Consensus 124 s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~ 199 (391)
T 1l0q_A 124 SPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--E 199 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--S
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--C
Confidence 8999877 678889999999999865 46666654 567999999999887 5778889999999999998877765 5
Q ss_pred CcEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 302 GSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
..+.+++|+|++++|++++ .++.|++||+.+++.+..+ ..+ .. +.+++|+|+|++ ++++.|+.|++||...
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~-~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG-PD-PAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC-SS-EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC-CC-ccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 6899999999999998888 6899999999999988874 333 22 588999999986 5668899999999875
Q ss_pred C
Q 014114 377 T 377 (430)
Q Consensus 377 ~ 377 (430)
.
T Consensus 276 ~ 276 (391)
T 1l0q_A 276 N 276 (391)
T ss_dssp T
T ss_pred C
Confidence 3
No 119
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.1e-30 Score=239.58 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=191.0
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCC-------ce
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC-------EK 196 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~-------~~ 196 (430)
.+++++.+|.+.||++...... ...+..+. .|...|.+++|+| ++++|++|+.||.|++||+.++ +.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~----~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 123 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRV----DKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP 123 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEEC----CTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC
T ss_pred EEEEEcCCCEEEEEECccCCCC----CCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCc
Confidence 3445788999999998543211 01222222 5788999999999 9999999999999999999987 45
Q ss_pred eeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCCcceEEe--eecCCCeEEEEeeCCCCEE
Q 014114 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNI 273 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l 273 (430)
+..+..|. ..|.+++| +|++ ++|++++.|+.|++||+.+++ .+..+ ..|...|.+++|+|++++|
T Consensus 124 ~~~~~~h~---------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 124 VITLEGHT---------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp SEEEECCS---------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred eEEecCCC---------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEE
Confidence 56666554 67999999 7887 699999999999999999865 47777 7799999999999999999
Q ss_pred EEEcCCCCEEEEEccCCeEEeEE-eccccCcEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCceeeEEeeccccceeE
Q 014114 274 YIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~s~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i 349 (430)
++++.|+.|++||+++++.+..+ ..|....+.+++|+|++.+|+++ +.|+.|++||+++++.........+ ...+
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v 270 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-SSGV 270 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-CSSC
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC-CCce
Confidence 99999999999999999999998 67633349999999999999999 7999999999998765322212223 3336
Q ss_pred EEeeecCCcce-e-eecCCCcEEEecCCCCC
Q 014114 350 FDSAFADKEVA-N-AAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 350 ~~~~~s~~g~~-~-~~~~d~~v~vw~~~~~~ 378 (430)
.+++|+|++.+ + +++.|+.|++|+.....
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 99999999998 4 56679999999987644
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.6e-29 Score=233.70 Aligned_cols=254 Identities=7% Similarity=-0.018 Sum_probs=170.7
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
.+++.+|++|+.|++|+|||..+++....... ....+|.+.|.++.|.+........++..|++++.|++++||++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 45667899999999999999988765433221 112356689999998763221111234589999999999999986
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCC-------------
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS------------- 207 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------- 207 (430)
... .+... ..|...+.+++|+|++ .+|++++.|++|++||+.+++.......+....
T Consensus 175 ~~~--------~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 175 DEG--------PILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp TTE--------EEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CCc--------eeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 432 22222 2467889999999987 489999999999999999876654433221110
Q ss_pred ---CCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEE------------------e
Q 014114 208 ---LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA------------------E 266 (430)
Q Consensus 208 ---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~------------------~ 266 (430)
....+...+.++.|. .+++..|++++.|+.+++||+..... ...+..|...+..+. |
T Consensus 246 ~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp ------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEE
Confidence 011234668888885 68999999999999999999987542 444444433333332 3
Q ss_pred eC--CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 267 EP--DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 267 s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
+| ++.++++|+.||.|++||+.+++.+..+..| ..+|++++|+|+|++||+++.+| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 22 3446778889999999999999988888887 78999999999999999999776 6666543
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=234.89 Aligned_cols=281 Identities=10% Similarity=0.047 Sum_probs=206.8
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++|++.|++|+ |... ...+.+|...+..++++ |+| .++.+.+|+ ++....+..
T Consensus 28 ~~iASas~D~TV~--d~~~--------~~~l~gh~~~v~~V~Fs----Pdg-------~~~~~~~~~---~~~~~~~~~- 82 (588)
T 2j04_A 28 TLYLTTFPDISIG--QPKY--------AKDINCNSKNLFHVKEF----PLE-------FENKLDFEL---AQQNGLLNS- 82 (588)
T ss_dssp CEEEECSSSEEEE--EECC--------CSCCSSBGGGTEEEEEE----CCC-------CCCTTTTSC---CCSSCSSTT-
T ss_pred CEEEEEcCCceee--cccc--------cceecCCCccEEEEEEC----CCC-------CcceEEEEe---CCCceEeec-
Confidence 4688999999999 6443 34556888887766664 455 455555554 332222221
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCC-----ceEEEE
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-----TIAFSK 169 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~~~ 169 (430)
.+.+.|.+++|.+... .+++++.+|.+.+|+... .+.... |.. .+.+++
T Consensus 83 ------~~~~~V~~vawSPdG~--------~LAs~s~dg~V~iwd~~~----------~l~~l~--~~~~~~~~sv~sva 136 (588)
T 2j04_A 83 ------QPVCYPRVCKPSPIDD--------WMAVLSNNGNVSVFKDNK----------MLTNLD--SKGNLSSRTYHCFE 136 (588)
T ss_dssp ------SCSCCEEEEEECSSSS--------CEEEEETTSCEEEEETTE----------EEEECC--CSSCSTTTCEEEEE
T ss_pred ------CCCCcEEEEEECCCCC--------EEEEEeCCCcEEEEeCCc----------eeeecc--CCCccccccEEEEE
Confidence 1236899999987444 999999999999999432 333333 332 599999
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCce-------eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 170 VDISEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 170 ~~~~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
|+|++++|++|+.||+|++||+.++.. +..+..+... |..+|.+++| +|++ +++++.|+.|++|
T Consensus 137 fSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-----h~~~V~sVaw--SPdg--Laass~D~tVrlW 207 (588)
T 2j04_A 137 WNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-----SKDWVTHIVW--YEDV--LVAALSNNSVFSM 207 (588)
T ss_dssp ECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-----CCCCEEEEEE--ETTE--EEEEETTCCEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-----ccccEEEEEE--cCCc--EEEEeCCCeEEEE
Confidence 999999999999999999999998752 4555333211 2378999999 7888 8888999999999
Q ss_pred ECCCCCc--ceEEe-eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEE--cCCCCEEE
Q 014114 243 DTSAQRR--PVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIA 317 (430)
Q Consensus 243 d~~~~~~--~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~ 317 (430)
|+..... ....+ .+|...|.+++|+ ++.|++++ ++.|++||+.+++......+| ...|..++| +|++..|+
T Consensus 208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILL 283 (588)
T ss_dssp CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEE
T ss_pred ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEE
Confidence 9987553 23456 4788899999999 68999887 699999999888774444476 899999999 99999999
Q ss_pred EEeCCCeEEEEeCCCC-----------------------ceeeEEeeccccceeEEEeeecCCcce-eeec
Q 014114 318 SCGLDSYLRFWDIKTR-----------------------QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 318 s~~~d~~v~iwd~~~~-----------------------~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~ 364 (430)
++++||+ ++|....- ..+.. +. + ...|++++|+|||+. ++++
T Consensus 284 ~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~--~~-~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 284 MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNN--YE-T-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSS--SC-C-EEEEEEEEECTTSSEEEEEE
T ss_pred EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceee--ec-c-ceEEEEEEECCCCCEEEEEE
Confidence 9999999 99986421 11111 11 1 345899999999988 5544
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=232.40 Aligned_cols=243 Identities=8% Similarity=0.059 Sum_probs=189.6
Q ss_pred EEEeccCCCCCCceE-EEEccCCeEEEeccC--CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc
Q 014114 54 VLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
+.+++| +|++++| ++|+.||.|+|||+. +++.+..+..+. +...+.++.|.+... .|++++
T Consensus 105 v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~--------~l~~~~ 168 (450)
T 2vdu_B 105 IRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC------FSKRPNAISIAEDDT--------TVIIAD 168 (450)
T ss_dssp EEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE------CSSCEEEEEECTTSS--------EEEEEE
T ss_pred eEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc------CCCCceEEEEcCCCC--------EEEEEe
Confidence 555666 7788886 899999999999998 888888876422 224788888877444 899999
Q ss_pred cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC---CCEEEEecCCCeEEEEECCCCceeee-ecCCCCC
Q 014114 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN 206 (430)
Q Consensus 131 ~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~ 206 (430)
.+|.+.+|++....... ..+..+. .|...|.+++|+|+ +++|++|+.|+.|++||+.+++.+.. +..|.
T Consensus 169 ~~g~v~~~~~~~~~~~~----~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~-- 241 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEK----FTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK-- 241 (450)
T ss_dssp TTSEEEEEETTSCCCSS----CCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--
T ss_pred CCCcEEEEecCCccccc----ccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--
Confidence 99999999976433210 0111222 46789999999999 99999999999999999999888776 33443
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee-------------------------cCCCe
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RETPI 261 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------------------~~~~i 261 (430)
..|.+++| + ++.+|++++.|+.|++||+.+++. +..+.. ....|
T Consensus 242 -------~~v~~~~~--s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 242 -------HFVSSICC--G-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp -------SCEEEEEE--C-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred -------CceEEEEE--C-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 67999999 7 999999999999999999998764 555542 23579
Q ss_pred EEEEeeCCCCEEEEEc-CCCCEEEEEc--cCC---eEEeEEeccccCcEEEEEEcCCCCEEEEEeC------CCeEEEEe
Q 014114 262 KAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWD 329 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~-~dg~v~iwd~--~~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~------d~~v~iwd 329 (430)
.+++|+|++++|++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+|.
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 9999999999999998 8999999999 565 677778775 78999999996533433333 45578887
Q ss_pred CCC
Q 014114 330 IKT 332 (430)
Q Consensus 330 ~~~ 332 (430)
+..
T Consensus 389 ~~~ 391 (450)
T 2vdu_B 389 YNL 391 (450)
T ss_dssp EET
T ss_pred EEc
Confidence 643
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.5e-29 Score=232.45 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=161.4
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEE--eeccCCceEEEEEcC--------CCCEEEEecCCCeEEEEECCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDI--------SEKFSLFGGKGVEVNVWDLDK 193 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~--------~~~~l~~~~~dg~v~iwd~~~ 193 (430)
..+++++.|+++++|++...... ..... ...|.+.|.+++|+| ++++|++|+.|++|++||+.+
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CEEEEEeCCCcEEEEECCCCccc------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 47899999999999998754321 11111 125788999999997 789999999999999999988
Q ss_pred CceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCCcceE--------------------
Q 014114 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVM-------------------- 252 (430)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~-------------------- 252 (430)
+..+..+..+. ..+.+++| +|++ .+|++++.|++|++||+++++....
T Consensus 176 ~~~~~~~~~~~---------~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 176 EGPILAGYPLS---------SPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TEEEEEEEECS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CceeeeecCCC---------CCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 87776666554 67999999 6776 5899999999999999987543111
Q ss_pred ----EeeecCCCeEEEEee-CCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcC----------------
Q 014114 253 ----SFDFRETPIKAVAEE-PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---------------- 311 (430)
Q Consensus 253 ----~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~---------------- 311 (430)
...+|...+.++.|+ |+++.|++++.|+.+++||+.+++....+..| ...+..+.+.|
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEccccccccccCcceeEEE
Confidence 123567788999987 79999999999999999999988777666655 44444443333
Q ss_pred ----CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 312 ----TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 312 ----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
++.++++|+.||.|+|||+.+++.+.. +.+|. ..|.+++|+|||++ ++++.+| +.+|.+
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~--~~~~~-~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSI--PIQLG-MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEE--EEECS-SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEE--ecCCC-CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 334677888999999999999988876 34453 45799999999999 6666555 555543
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.5e-28 Score=220.28 Aligned_cols=262 Identities=7% Similarity=-0.037 Sum_probs=187.3
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceE-EEEccCCeEEEeccCCCceeeeeeec
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.|++|+.+ .++||++... ....... ...+.++++.+ +++++ ++|+.|+.|+|||..+++.+..+...
T Consensus 33 ~la~g~~~-~~~iw~~~~~-----~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~ 100 (355)
T 3vu4_A 33 CLILSTLK-SFEIYNVHPV-----AHIMSQE--MRHLSKVRMLH----RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD 100 (355)
T ss_dssp EEEEECSS-EEEEEEETTE-----EEEEEEE--CSCCCEEEECT----TSSEEEEECSSTTEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCC-EEEEEecCCc-----ceeeeee--cCCeEEEEEcC----CCCEEEEEECCccEEEEEECCCCcEEEEEECC
Confidence 35555555 4899998864 2222222 12355666665 33455 56888899999999999988877642
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCC
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
..+.++.+.+ ..++. ..++.+++|++..... .+..+.. ....+++++
T Consensus 101 ---------~~v~~v~~~~----------~~~~~-~~~~~i~i~d~~~~~~-------~~~~~~~----~~~~~~~s~-- 147 (355)
T 3vu4_A 101 ---------APVKDLFLSR----------EFIVV-SYGDVISVFKFGNPWK-------RITDDIR----FGGVCEFSN-- 147 (355)
T ss_dssp ---------SCEEEEEECS----------SEEEE-EETTEEEEEESSTTCC-------BSSCCEE----EEEEEEEET--
T ss_pred ---------CceEEEEEcC----------CEEEE-EEcCEEEEEECCCCce-------eeEEecc----CCceEEEEc--
Confidence 3677777643 13333 3578999999875411 1222221 333455666
Q ss_pred CEEEE--ecCCCeEEEEECCCCc----------------eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC
Q 014114 175 KFSLF--GGKGVEVNVWDLDKCE----------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 175 ~~l~~--~~~dg~v~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (430)
.++++ |+.+|.|++||+.++. .+..+..|. ..|.+++| +|++++|++++.|
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---------~~v~~~~~--s~~g~~l~s~s~d 216 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---------NPIKMVRL--NRKSDMVATCSQD 216 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS---------SCEEEEEE--CTTSSEEEEEETT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---------CceEEEEE--CCCCCEEEEEeCC
Confidence 56665 6899999999999865 145555554 77999999 8999999999999
Q ss_pred Cc-EEEEECCCCCcceEEee-e-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE--eE----------------
Q 014114 237 HQ-VRLYDTSAQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC---------------- 295 (430)
Q Consensus 237 g~-i~~wd~~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~---------------- 295 (430)
++ |++||+++++. +..+. + |...|.+++|+|++++|++++.|+.|++||++.+... ..
T Consensus 217 ~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T 3vu4_A 217 GTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL 295 (355)
T ss_dssp CSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred CCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence 98 99999998764 77777 5 8999999999999999999999999999999765311 11
Q ss_pred ----EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 014114 296 ----FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 296 ----~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~ 334 (430)
+..........++|++++++|++++.||.+++|++..++
T Consensus 296 ~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 296 CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 111112234678999999999999999999999987644
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=249.54 Aligned_cols=236 Identities=15% Similarity=0.127 Sum_probs=189.2
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeec
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|+|||+.++ .......+.+|...+..++++. .+++++|++|+.||.|++||+.+++...
T Consensus 22 ~~latg~~dg~I~vwd~~~~---~~~~~~~l~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I~vwd~~~~~~~~----- 91 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVLIWKEENGRWSQ----- 91 (753)
T ss_dssp CCEEEEETTTEEEEEEEETT---EEEEEEEECCCSSCEEEEEECC--TTSCSEEEEEETTSCEEEEEEETTEEEE-----
T ss_pred CeEEEEECCCcEEEEecCCC---CCccceeccCCcCceEEEEecC--CCCCCEEEEEeCCCeEEEEECCCCcccc-----
Confidence 46899999999999999731 1255678888999876666655 3448899999999999999986543100
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC-
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
+.. ...|...|.+++|+|+
T Consensus 92 --------------~~~----------------------------------------------~~~h~~~V~~v~~sp~~ 111 (753)
T 3jro_A 92 --------------IAV----------------------------------------------HAVHSASVNSVQWAPHE 111 (753)
T ss_dssp --------------EEE----------------------------------------------ECCCSSCEEEEEECCGG
T ss_pred --------------ccc----------------------------------------------ccCCCCCeEEEEECCCC
Confidence 000 0135578899999998
Q ss_pred -CCEEEEecCCCeEEEEECCCCce--eeeecCCCCCCCCcccCcceeEeEEeeCC-------------CCCEEEEEeCCC
Q 014114 174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDH 237 (430)
Q Consensus 174 -~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg 237 (430)
++++++|+.||.|++||+.++.. ...+..+. ..|.++.| +| ++.+|++|+.||
T Consensus 112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~---------~~v~~l~~--~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS---------SCEEEEEE--CCCC---------CGGGCCEEEEETTS
T ss_pred CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC---------CceEEEEe--cCcccccccccccCCCCCEEEEEECCC
Confidence 99999999999999999987632 23333333 67999999 66 589999999999
Q ss_pred cEEEEECCCCC---cceEEeeecCCCeEEEEeeCC---CCEEEEEcCCCCEEEEEccCCe-----EEeEEeccccCcEEE
Q 014114 238 QVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRS 306 (430)
Q Consensus 238 ~i~~wd~~~~~---~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~ 306 (430)
.|++||++.+. .+...+.+|..+|++++|+|+ +.+|++|+.||.|++||+++++ .+.....| ...|++
T Consensus 181 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~ 259 (753)
T 3jro_A 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR 259 (753)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCC
T ss_pred eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEE
Confidence 99999998764 345667789999999999999 8999999999999999998864 23333345 889999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
++|+|++++|++++.||.|++|++.+
T Consensus 260 l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 260 ASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999999999874
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.6e-27 Score=219.79 Aligned_cols=267 Identities=12% Similarity=0.104 Sum_probs=207.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhhe-----ecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVE-----RWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
..+++++.++.|++||+.++ +... .+.+|...+..+++ +|++.++++++.|+.|++||+.+++.+.
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVETISI----PEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEEEEE----GGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeEEEE----cCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 34566778889999999875 3333 34467666555554 5678899999999999999999988888
Q ss_pred eeeecCCCCCCCCCCceEEEEeeccCccccccCCceE-EEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEE
Q 014114 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
.+..+. ..+.++.+.+... .+ +++..++.+.+|++.... .+. .......+.++
T Consensus 206 ~~~~~~--------~~~~~~~~~~~~~--------~l~~~~~~~~~i~~~d~~~~~--------~~~--~~~~~~~~~~~ 259 (433)
T 3bws_A 206 TVDLTG--------KWSKILLYDPIRD--------LVYCSNWISEDISVIDRKTKL--------EIR--KTDKIGLPRGL 259 (433)
T ss_dssp EEECSS--------SSEEEEEEETTTT--------EEEEEETTTTEEEEEETTTTE--------EEE--ECCCCSEEEEE
T ss_pred EEcCCC--------CCeeEEEEcCCCC--------EEEEEecCCCcEEEEECCCCc--------EEE--EecCCCCceEE
Confidence 776533 4677788766433 55 566689999999975322 222 23345669999
Q ss_pred EEcCCCCEEEEec--------CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCE-EEEEeCCCcE
Q 014114 169 KVDISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQV 239 (430)
Q Consensus 169 ~~~~~~~~l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i 239 (430)
+|+|++++|++++ .|+.|++||+.+++.+..+.. ...+.+++| +|+++. +++++.++.|
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~~~~~~~--~~~g~~l~~~~~~~~~v 327 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP----------PGNKRHIVS--GNTENKIYVSDMCCSKI 327 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE----------EECEEEEEE--CSSTTEEEEEETTTTEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC----------CCCcceEEE--CCCCCEEEEEecCCCEE
Confidence 9999999999887 488999999999887766532 145788999 888865 4666899999
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC---------------CCCEEEEEccCCeEEeEEeccccCcE
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~v 304 (430)
++||+.+++ .+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.+..+.. ...+
T Consensus 328 ~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~ 403 (433)
T 3bws_A 328 EVYDLKEKK-VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQP 403 (433)
T ss_dssp EEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSE
T ss_pred EEEECCCCc-EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCC
Confidence 999999755 355554 6678999999999999988876 57999999999999988887 4579
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEeCCC
Q 014114 305 RSIARHPTLPIIASCGL-DSYLRFWDIKT 332 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~-d~~v~iwd~~~ 332 (430)
.+++|+|++++|++++. |+.|++|++..
T Consensus 404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 404 TGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 99999999999988875 99999999863
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.2e-26 Score=219.34 Aligned_cols=313 Identities=12% Similarity=0.141 Sum_probs=228.7
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEecc--CCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~--~~~~~~~~~~ 92 (430)
..++++..++.|.+||..++ +++.++..+.. + ..+.+ +|+|++|++++.|+.|.+||+ .+++.+..+.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~-~--~~v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA-V--HISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT-E--EEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc-c--ceEEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 45777888999999999886 66666663322 3 34445 778999999999999999999 7888877775
Q ss_pred ecCCCCCCCCCCceEEEEeec----cCccccccCCceEEEEc-cCCeeEEEEeeeecccccCCcceeeEEee--------
Q 014114 93 NAGDSGAQPEDDGIVGLHLFK----RQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNV-------- 159 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-------- 159 (430)
.. .....+.+.+ ... .++++. .++.+.||+..... .++.+..
T Consensus 220 ~g---------~~p~~va~sp~~~~dg~--------~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 220 IG---------IEARSVESSKFKGYEDR--------YTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQ 274 (543)
T ss_dssp CC---------SEEEEEEECCSTTCTTT--------EEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSC
T ss_pred cC---------CCcceEEeCCCcCCCCC--------EEEEEEccCCeEEEEeccccc--------cceeecccCcccCcc
Confidence 42 2456676654 333 666665 58999999865332 3333322
Q ss_pred --ccCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceee--eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe
Q 014114 160 --CASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 160 --~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (430)
.....+..+.++|++. ++++...++.|.+||+.+.+.+. .+.. ...+..+.| +|++++|++++
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----------~~~~~~~~~--spdg~~l~va~ 342 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----------APFLHDGGW--DSSHRYFMTAA 342 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------CSSCCCEEE--CTTSCEEEEEE
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------CcCccCceE--CCCCCEEEEEe
Confidence 1123788999999665 55667789999999998865443 3321 145778899 89999876654
Q ss_pred -CCCcEEEEECCCCCcceEEeee----cCCCeEEEEeeCC-CCEEEEEc-CCCCEEEEEccC-------CeEEeEEeccc
Q 014114 235 -NDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKC 300 (430)
Q Consensus 235 -~dg~i~~wd~~~~~~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~~-~dg~v~iwd~~~-------~~~~~~~~~~~ 300 (430)
.+++|.+||+.+++ .+..+.. |......+ ++|+ +..++++. .|++|.+||+.+ ++++.++.+|
T Consensus 343 ~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~- 419 (543)
T 1nir_A 343 NNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ- 419 (543)
T ss_dssp GGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-
T ss_pred cCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-
Confidence 58899999999865 4666653 54434443 4777 56666665 689999999998 8999999998
Q ss_pred cCcEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCcee-eEEee------ccccceeEEEeeecCCcce-eee--
Q 014114 301 SGSIRSIARHPTLPIIASCG-------LDSYLRFWDIKTRQLL-SAVFL------KQHLNEVVFDSAFADKEVA-NAA-- 363 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~-------~d~~v~iwd~~~~~~~-~~~~~------~~~~~~~i~~~~~s~~g~~-~~~-- 363 (430)
...+..|+|+|++++|++++ .+++|.+||+.+++.. ..+.+ ..+ ...+..+.|+|+|+. +++
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCEEEEEEECSSSSEEEEEEE
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-CCceEeccCCCCCCEEEEEee
Confidence 78889999999999999987 2779999999999887 33211 222 344799999999999 433
Q ss_pred ---cCCCcEEEecCCCCC
Q 014114 364 ---ADAPMLEIQNGNDTQ 378 (430)
Q Consensus 364 ---~~d~~v~vw~~~~~~ 378 (430)
+.++.|.|||..+..
T Consensus 499 ~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CCTTSCCEEEEEETTTTE
T ss_pred cCCCCCCeEEEEECCCce
Confidence 257999999987744
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9.6e-25 Score=202.92 Aligned_cols=291 Identities=8% Similarity=-0.005 Sum_probs=207.9
Q ss_pred eEeec----CCC----cEEEEEe--cCccCCcchhh--eecCCCCcceEEEEecc----------CCCCCCceEEEEccC
Q 014114 17 ALTFD----SLG----LIKVIEA--RGEDGGVPKVV--ERWGDPHSSKCVLAASI----------DDSQNDPLLAVARKN 74 (430)
Q Consensus 17 l~t~~----~dg----~i~vw~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~~~p~g~~l~~g~~d 74 (430)
+++|+ .+| .|+|||+ .++ +.+ ..+.+|...+..+++.+ ...+.+..|+.++.+
T Consensus 78 ~~~g~~~~~~~G~~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~ 152 (415)
T 2hqs_A 78 VVVGQVTPNPDGSYNVAYQLVDTGGAPG-----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQT 152 (415)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECSSSTT-----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEEEeCCCCCC-----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEec
Confidence 44665 567 8999999 764 333 34666665544333332 112235567666554
Q ss_pred ------CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC---eeEEEEeeeecc
Q 014114 75 ------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKV 145 (430)
Q Consensus 75 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g---~i~v~~~~~~~~ 145 (430)
+.|++||+. +.....+..|. ..+.++.|.+... .++.++.++ .+.+|++....
T Consensus 153 ~~~~~~~~i~i~d~~-g~~~~~l~~~~--------~~v~~~~~Spdg~--------~la~~s~~~~~~~i~~~d~~tg~- 214 (415)
T 2hqs_A 153 NGGQFPYELRVSDYD-GYNQFVVHRSP--------QPLMSPAWSPDGS--------KLAYVTFESGRSALVIQTLANGA- 214 (415)
T ss_dssp SSSSCCEEEEEEETT-SCSCEEEEEES--------SCEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTTCC-
T ss_pred CCCCccceEEEEcCC-CCCCEEEeCCC--------CcceeeEEcCCCC--------EEEEEEecCCCcEEEEEECCCCc-
Confidence 799999996 45555665543 4688888876444 888888775 89999986422
Q ss_pred cccCCcceeeEEeeccCCceEEEEEcCCCCEEE-EecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEe
Q 014114 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
...+ ..+...+.+++|+|++++|+ +++.++ .|++||+.+++. ..+..+. ..+.+++|
T Consensus 215 -------~~~l--~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---------~~~~~~~~- 274 (415)
T 2hqs_A 215 -------VRQV--ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR---------SNNTEPTW- 274 (415)
T ss_dssp -------EEEE--ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS---------SCEEEEEE-
T ss_pred -------EEEe--ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC---------CcccceEE-
Confidence 2222 23557899999999999887 666555 499999988776 3444432 56889999
Q ss_pred eCCCCCEEEEEeC-CC--cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC---CCEEEEEccCCeEEeEE
Q 014114 223 SIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCF 296 (430)
Q Consensus 223 ~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~ 296 (430)
+|++++|++++. ++ .|++||+.+++ ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+
T Consensus 275 -spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l 350 (415)
T 2hqs_A 275 -FPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL 350 (415)
T ss_dssp -CTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred -CCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence 899999988876 44 67888988754 44556677789999999999999988764 57999999988764 45
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 297 IGKCSGSIRSIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 297 ~~~~~~~v~~i~~s~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
..+ . .+.+++|+|+|++|++++.++ .|++||+. +..... +.++. ..+.+++|+|.-.+
T Consensus 351 ~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~--l~~~~-~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 351 SST-F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKAR--LPATD-GQVKFPAWSPYLHH 411 (415)
T ss_dssp CCS-S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEE--CCCSS-SEEEEEEECCCCCC
T ss_pred cCC-C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEE--eeCCC-CCCcCCcccccccc
Confidence 554 3 899999999999999988777 89999987 444555 55663 44699999997543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.4e-24 Score=201.86 Aligned_cols=272 Identities=9% Similarity=0.017 Sum_probs=193.3
Q ss_pred ceEEEEc----cCC----eEEEecc--CCCceeee--eeecCCCCCCCCCCceEEEEeec------cCccccccCCceEE
Q 014114 66 PLLAVAR----KNG----LTDILNP--LNGDLRVA--ISNAGDSGAQPEDDGIVGLHLFK------RQREESSSRSRTLL 127 (430)
Q Consensus 66 ~~l~~g~----~dg----~i~iwd~--~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 127 (430)
+++++|+ .+| .|+|||+ .+++++.. +.++. ..+..+.+.. .........+..++
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~ 147 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK--------QWLRYAGHTASDEVFEKLTGIKGAFRTRIA 147 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECG--------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh--------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence 4666776 467 8999999 88887733 54432 1221111110 00000000133555
Q ss_pred EEccC------CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC---eEEEEECCCCceee
Q 014114 128 TCTTK------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKCEKIW 198 (430)
Q Consensus 128 ~~~~~------g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~ 198 (430)
.++.+ +.+.+|++... .++... .+...+.+++|+|++++|++++.++ .|++||+.+++...
T Consensus 148 ~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 148 YVVQTNGGQFPYELRVSDYDGY---------NQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp EEEECSSSSCCEEEEEEETTSC---------SCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred EEEecCCCCccceEEEEcCCCC---------CCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence 55554 78999997521 222222 3567899999999999999998875 99999999987754
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEE-EEeCCCc--EEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEE
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 275 (430)
+..+. ..+.+++| +|++++|+ +++.++. |++||+.+++ ...+..|...+.+++|+|+|++|++
T Consensus 218 -l~~~~---------~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 218 -VASFP---------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp -EECCS---------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEE
T ss_pred -eecCC---------CcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEE
Confidence 33332 56889999 89999887 6666654 9999998855 4667778889999999999999988
Q ss_pred EcC-CC--CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEEeeccccceeE
Q 014114 276 GNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 276 ~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~i 349 (430)
++. ++ .|.+||+.+++. ..+..+ ...+.+++|+|+|++|++++.+ ..|++||+.+++... +..+. .+
T Consensus 284 ~s~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~---l~~~~--~~ 356 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV---LSSTF--LD 356 (415)
T ss_dssp EECTTSSCEEEEEETTSSCC-EECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE---CCCSS--SC
T ss_pred EECCCCCcEEEEEECCCCCE-EEEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE---ecCCC--Cc
Confidence 876 44 577779887764 344444 6789999999999999888764 589999999887643 33342 46
Q ss_pred EEeeecCCcce-eeecCCC---cEEEecCCC
Q 014114 350 FDSAFADKEVA-NAAADAP---MLEIQNGND 376 (430)
Q Consensus 350 ~~~~~s~~g~~-~~~~~d~---~v~vw~~~~ 376 (430)
.+++|+|||++ ++++.++ .|.+|+...
T Consensus 357 ~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 357 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred CCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 89999999998 7776666 799998764
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.9e-23 Score=200.15 Aligned_cols=284 Identities=10% Similarity=0.052 Sum_probs=210.1
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEe-
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI- 140 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~- 140 (430)
+|++.++++++.|++|.+||..+++++..+.... .+..+.+.+.. .++++++.++.+.+|++
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~---------~~~~v~~spdg--------~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---------AVHISRMSASG--------RYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST---------TEEEEEECTTS--------CEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc---------ccceEEECCCC--------CEEEEECCCCeEEEEECc
Confidence 6788899999999999999999999998887421 35556665533 48999999999999998
Q ss_pred -eeecccccCCcceeeEEeeccCCceEEEEEcC----CCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCC-CcccC
Q 014114 141 -EVTKVSAESSCSTVKSWNVCASGTIAFSKVDI----SEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTP 213 (430)
Q Consensus 141 -~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~----~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~ 213 (430)
... ..+.. +.++..+..++|+| ++++|++++. +++|.+||..+++++..+..+..... ..+|+
T Consensus 209 ~~t~--------~~~~~--i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 209 AKEP--------TKVAE--IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp SSSC--------EEEEE--EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred CCCC--------cEEEE--EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 321 12222 33466789999999 9999998885 89999999999999888765321100 01122
Q ss_pred -cceeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCC
Q 014114 214 -TWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTG 290 (430)
Q Consensus 214 -~~v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~ 290 (430)
..+..+.+ +|++. ++++...++.|.+||+.+.+........+...+..++|+|++++|+++ ..+++|.+||+.++
T Consensus 279 ~~~v~~i~~--s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 279 EPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp CCCEEEEEE--CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CCceEEEEE--CCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence 36888888 77655 566677899999999987654322222356678899999999987655 46889999999999
Q ss_pred eEEeEEecc---ccCcEEEEEEcCC-CCEEEEEe-CCCeEEEEeCCC-------CceeeEEeeccccceeEEEeeecCCc
Q 014114 291 KLLGCFIGK---CSGSIRSIARHPT-LPIIASCG-LDSYLRFWDIKT-------RQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 291 ~~~~~~~~~---~~~~v~~i~~s~~-~~~l~s~~-~d~~v~iwd~~~-------~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
+++..+... |.+....+ ++|+ +++++++. .|++|.+||+.+ ++.+++ +.++... +..++|+|+|
T Consensus 357 ~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~--l~~~g~~-~~~v~~~pdg 432 (543)
T 1nir_A 357 RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE--LQGQGGG-SLFIKTHPKS 432 (543)
T ss_dssp EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE--EECSCSC-CCCEECCTTC
T ss_pred eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE--EEcCCCC-ceEEEcCCCC
Confidence 999888741 14333333 4677 66677775 689999999998 888888 4555333 4788999999
Q ss_pred ce-eeec-------CCCcEEEecCCCCC
Q 014114 359 VA-NAAA-------DAPMLEIQNGNDTQ 378 (430)
Q Consensus 359 ~~-~~~~-------~d~~v~vw~~~~~~ 378 (430)
++ ++.+ .+++|.|||.....
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CcEEEecCCCCCcccCceEEEEECCCCC
Confidence 99 4443 27799999998754
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=4.3e-22 Score=179.56 Aligned_cols=273 Identities=9% Similarity=-0.029 Sum_probs=191.3
Q ss_pred CceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCeeEEEEeeee
Q 014114 65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVT 143 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~v~~~~~~ 143 (430)
+..++++..++.|.+||..+++.+..+... .... .+.+.+.. ..++++ ..++.+.+|++...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~~-~~~~s~dg--------~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLG--------YDFV-DTAITSDC--------SNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECC--------CCEE-EEEECSSS--------CEEEEEESTTCEEEEEECSSS
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEcc--------CCcc-eEEEcCCC--------CEEEEEeCCCCeEEEEECCCC
Confidence 345777889999999999999987777642 1234 56665533 245554 44889999998643
Q ss_pred cccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC---eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeE
Q 014114 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
.. .+.... .+..+..+++|+|++++|+++..++ .|.+||+.+++.+..+... ....+++
T Consensus 73 ~~-------~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----------~~~~~~~ 134 (331)
T 3u4y_A 73 PP-------KVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----------YDAVGIA 134 (331)
T ss_dssp SC-------EEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----------TTEEEEE
T ss_pred ce-------eEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----------CCccceE
Confidence 21 122222 2233444499999999999665553 8999999999888776543 3367899
Q ss_pred EeeCCCCCEEEEE-eCCCc-EEEEECCCCCcce---EEeeecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCeE--
Q 014114 221 FLSIDDHRKFVAG-TNDHQ-VRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKL-- 292 (430)
Q Consensus 221 ~~~~~~~~~l~~~-~~dg~-i~~wd~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~-- 292 (430)
| +|++++++++ ..++. |.+|++....... ............++|+|+|++++++ ..++.|.+||+.+++.
T Consensus 135 ~--spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 135 I--SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp E--CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred E--CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9 8999855554 55688 9999998644321 1112234568999999999966554 4688999999998887
Q ss_pred -EeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce--eeEEeec----cccceeEEEeeecCCcce--ee
Q 014114 293 -LGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQL--LSAVFLK----QHLNEVVFDSAFADKEVA--NA 362 (430)
Q Consensus 293 -~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~--~~~~~~~----~~~~~~i~~~~~s~~g~~--~~ 362 (430)
+..+.. ...+..++|+|+|++|+.++ .++.|.+||+.+++. +..+... .........++|+|||++ ++
T Consensus 213 ~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 777765 46778999999999776655 578899999999887 3332111 111111245799999997 45
Q ss_pred ecCCCcEEEecCCC
Q 014114 363 AADAPMLEIQNGND 376 (430)
Q Consensus 363 ~~~d~~v~vw~~~~ 376 (430)
...++.|.+|+...
T Consensus 291 ~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 291 ANISRELKVFTISG 304 (331)
T ss_dssp ETTTTEEEEEETTS
T ss_pred cCCCCcEEEEEecC
Confidence 66678999999875
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=8.8e-23 Score=184.34 Aligned_cols=279 Identities=13% Similarity=0.023 Sum_probs=195.8
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCc--ceEEEEeccCCCCCCceE-EEEccCCeEEEeccCCCceeeeee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHS--SKCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+++++.++.|.+||+.++ +.+..+..... ....+ ++ +|+|++| +++..++.|.+||+.+++.+..+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~--~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVP--MV--APGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCE--EE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCccce--EE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 4788999999999999875 44544442221 22233 34 6677665 556678999999999998877665
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc------------cCCeeEEEEeeeecccccCCcceeeEEeec
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
...+. .+...+..+.+.+.. ..++++. .++.+.+|++.... .+..+.
T Consensus 74 ~~~~~---~~~~~~~~~~~s~dg--------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~-- 132 (337)
T 1pby_B 74 LSTPE---ERVKSLFGAALSPDG--------KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFE-- 132 (337)
T ss_dssp CCBTT---EEEECTTCEEECTTS--------SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEE--
T ss_pred cCCcc---cccccccceEECCCC--------CEEEEEecccccccccccccCceEEEEECCCCc--------EEEEEe--
Confidence 31100 000122334554422 3666664 56899999875321 223333
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC---
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--- 237 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--- 237 (430)
....+.+++|+|++++|+++ ++.|++||+.+++.+..+...... ..+.| +|++..++..+..+
T Consensus 133 ~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~--s~dg~~l~~~~~~~~~~ 198 (337)
T 1pby_B 133 APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE----------AETYA--QPDVLAVWNQHESSGVM 198 (337)
T ss_dssp CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT----------TTTBC--CCBCCCCCCCCTTTTEE
T ss_pred CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC----------CCcee--CCCccEEeeeccCCCce
Confidence 34567889999999988887 678999999999887766543210 11244 66776554443322
Q ss_pred ---------------------cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEE
Q 014114 238 ---------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 238 ---------------------~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 296 (430)
.|.+||+.+++.....+..+...+.+++|+|++++++++ ++.|.+||+.+++.+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence 478999998764334455566788899999999999988 789999999999988887
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec
Q 014114 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 297 ~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 342 (430)
.. ...+.+++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus 277 ~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 277 PL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred cC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 75 356789999999999999999999999999999998886544
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.1e-21 Score=178.54 Aligned_cols=267 Identities=12% Similarity=0.084 Sum_probs=196.5
Q ss_pred EEeccCCCCCCceEEEEcc-------CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEE
Q 014114 55 LAASIDDSQNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (430)
..+.+ +|+|++|++++. ++.|.+||..+++.+..+.... .+..+.+.+... ..++
T Consensus 44 ~~~~~--s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~-------~l~v 105 (353)
T 3vgz_A 44 YEMAY--SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---------KPFGATINNTTQ-------TLWF 105 (353)
T ss_dssp EEEEE--ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---------CCCSEEEETTTT-------EEEE
T ss_pred cceEE--CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---------CcceEEECCCCC-------EEEE
Confidence 34455 678888888763 5789999999999888776522 233355544222 2455
Q ss_pred EEccCCeeEEEEeeeecccccCCcceeeEEeeccCC--------ceEEEEEcCCCCEEEEec--CCCeEEEEECCCCcee
Q 014114 128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKI 197 (430)
Q Consensus 128 ~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~ 197 (430)
+...++.+.+|++.... .+..+...... .+.+++|+|+++++++++ .++.|.+||+.+++.+
T Consensus 106 ~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp EETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred EecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 66668999999975432 23333332211 268899999999887765 4789999999999988
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee----cCCCeEEEEeeCCCCEE
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNI 273 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l 273 (430)
..+.... ..+..++| +|+++++++++.++.|.+||+.+++. ...+.. +...+..++|+|+++++
T Consensus 178 ~~~~~~~---------~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 178 TAIQNTG---------KMSTGLAL--DSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEECCCC---------TTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred EEecCCC---------CccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEE
Confidence 8876332 33677888 89999999999999999999998653 555543 45568889999999977
Q ss_pred EEEcC-CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEE
Q 014114 274 YIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFD 351 (430)
Q Consensus 274 ~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~ 351 (430)
++++. ++.|.+||+.+++.+..+... . ...++|+|++++++.++ .++.|.+||+.+++.+..+... ..+.+
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~ 318 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP----THPNS 318 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC----SEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC----CCCCe
Confidence 77664 489999999999988888764 2 25799999999666555 7899999999999988875332 23589
Q ss_pred eeecCCcce-eeecCC
Q 014114 352 SAFADKEVA-NAAADA 366 (430)
Q Consensus 352 ~~~s~~g~~-~~~~~d 366 (430)
++|+|||++ +++..+
T Consensus 319 ~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEEcCCCCEEEEEEcc
Confidence 999999996 444333
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=4.6e-22 Score=180.04 Aligned_cols=297 Identities=9% Similarity=0.033 Sum_probs=187.6
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccC-CeEEEeccC--CCcee--eee
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLR--VAI 91 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d-g~i~iwd~~--~~~~~--~~~ 91 (430)
+++++.++.|++|++... +....+..+. +...+.. +++ +|+|++|++++.+ +.|.+|++. +++.. ..+
T Consensus 8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~~~~~~--~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHE--GALTLTQVVD-VPGQVQP--MVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEGGGTEEEEEEECTT--SCEEEEEEEE-CSSCCCC--EEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCC--CcEEEeeeEe-cCCCCce--EEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 344478999999999631 1112222232 3344333 444 6788888888776 999999997 45432 222
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
... ..+..+.+.+... .++++ ..++.+.+|++..... ...+.. ......+.+++|
T Consensus 81 ~~~---------~~~~~~~~s~dg~--------~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~--~~~~~~~~~~~~ 136 (343)
T 1ri6_A 81 ALP---------GSLTHISTDHQGQ--------FVFVGSYNAGNVSVTRLEDGLP-----VGVVDV--VEGLDGCHSANI 136 (343)
T ss_dssp ECS---------SCCSEEEECTTSS--------EEEEEETTTTEEEEEEEETTEE-----EEEEEE--ECCCTTBCCCEE
T ss_pred ccC---------CCCcEEEEcCCCC--------EEEEEecCCCeEEEEECCCCcc-----cccccc--ccCCCCceEEEE
Confidence 221 1445566655332 55544 4588999999841100 012222 233456889999
Q ss_pred cCCCCEEEEec-CCCeEEEEECCC-Cceee----eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEE
Q 014114 171 DISEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD 243 (430)
Q Consensus 171 ~~~~~~l~~~~-~dg~v~iwd~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd 243 (430)
+|++++|++++ .++.|.+||+.+ ++... .+..+. ...+..++| +|+++++++++ .++.|.+||
T Consensus 137 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 137 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------GAGPRHMVF--HPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC--------CCCcceEEE--CCCCCEEEEEeCCCCEEEEEE
Confidence 99999888776 889999999987 54432 122111 135778899 89999776554 789999999
Q ss_pred CCC--CCc-ceEEeee---c---CCCeEEEEeeCCCCEEEE-EcCCCCEEEEEcc----CCeEEeEEeccccCcEEEEEE
Q 014114 244 TSA--QRR-PVMSFDF---R---ETPIKAVAEEPDSFNIYI-GNGSGDLASVDIR----TGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 244 ~~~--~~~-~~~~~~~---~---~~~i~~~~~s~~~~~l~~-~~~dg~v~iwd~~----~~~~~~~~~~~~~~~v~~i~~ 309 (430)
+.. +.. ....+.. . ...+..++|+|++++|++ +..++.|.+||+. +.+.+..+..+ . .+.+++|
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~ 284 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNV 284 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEE
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEE
Confidence 964 221 1222221 1 235678999999988874 4578999999998 23455556554 3 4899999
Q ss_pred cCCCCEEEEEe-CCCeEEEEeC--CCCceeeEEeeccccceeEEEeeecCCc
Q 014114 310 HPTLPIIASCG-LDSYLRFWDI--KTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 310 s~~~~~l~s~~-~d~~v~iwd~--~~~~~~~~~~~~~~~~~~i~~~~~s~~g 358 (430)
+|++++|++++ .++.|.+|++ .+++......+... ....+++|.++.
T Consensus 285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~ 334 (343)
T 1ri6_A 285 DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHE 334 (343)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEccc
Confidence 99999888887 6899999954 45543322112221 223566776653
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.1e-22 Score=179.89 Aligned_cols=256 Identities=11% Similarity=0.019 Sum_probs=183.6
Q ss_pred EEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee-eccccc
Q 014114 70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-TKVSAE 148 (430)
Q Consensus 70 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~-~~~~~~ 148 (430)
.++.|+.|.+||+.+++...... +. ..+.++.+.+... .++++. ++.+.+|++.. ..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~-~~--------~~v~~~~~spdg~--------~l~~~~-~~~i~~~d~~~~~~---- 74 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQ-TP--------ELFEAPNWSPDGK--------YLLLNS-EGLLYRLSLAGDPS---- 74 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEE-ES--------SCCEEEEECTTSS--------EEEEEE-TTEEEEEESSSCCS----
T ss_pred CCCcceeEEEEeCCCCceeeecc-CC--------cceEeeEECCCCC--------EEEEEc-CCeEEEEeCCCCCC----
Confidence 35678999999998887654333 22 4677888866433 666655 78999999865 32
Q ss_pred CCcceeeEEeeccCCceEEEEEcCCCCEEEEecC--C--CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeC
Q 014114 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--G--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 149 ~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
...+....+...+.+++|+|++++|++++. + ..|..|++.++.. ..+..+ ..+..++| +
T Consensus 75 ----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~----------~~~~~~~~--s 137 (297)
T 2ojh_A 75 ----PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN----------LPSYWHGW--S 137 (297)
T ss_dssp ----CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS----------SSEEEEEE--C
T ss_pred ----ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC----------CCccceEE--C
Confidence 222222223467889999999999998883 3 4455555555443 233222 33778889 8
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEcc-CCeEEeEEecccc
Q 014114 225 DDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCS 301 (430)
Q Consensus 225 ~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~-~~~~~~~~~~~~~ 301 (430)
|++++|+ ++..++.+.+|++.........+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..+ .
T Consensus 138 pdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 216 (297)
T 2ojh_A 138 PDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-A 216 (297)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-S
T ss_pred CCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-C
Confidence 9999877 7778999999986532223566677778999999999999888766 58999999986 45566677776 7
Q ss_pred CcEEEEEEcCCCCEEEEEeCC-----------CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC
Q 014114 302 GSIRSIARHPTLPIIASCGLD-----------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d 366 (430)
..+.+++|+|++++|++++.+ +.|++||+.+++......+.++.. .+..++|+|+|+. ++++.+
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEEC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEec
Confidence 789999999999999888765 569999999887655433444533 3588999999998 555544
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.2e-21 Score=177.20 Aligned_cols=272 Identities=11% Similarity=0.081 Sum_probs=179.4
Q ss_pred ceEEE-EccCCeEEEeccC-CCce--eeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC-CeeEEEEe
Q 014114 66 PLLAV-ARKNGLTDILNPL-NGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-GKASMRSI 140 (430)
Q Consensus 66 ~~l~~-g~~dg~i~iwd~~-~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~i~v~~~ 140 (430)
++|++ ++.|+.|.+|++. +++. +..+. +...+.++.+.+.. ..+++++.+ +.+.+|++
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~spdg--------~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD---------VPGQVQPMVVSPDK--------RYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---------CSSCCCCEEECTTS--------SEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe---------cCCCCceEEECCCC--------CEEEEeecCCCeEEEEEe
Confidence 34544 4789999999985 3322 22221 11244556665533 367777665 99999998
Q ss_pred eeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEec-CCCeEEEEECC---CCceeeeecCCCCCCCCcccCcce
Q 014114 141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
..... ....+... .....+..++|+|++++|++++ .++.|.+||+. ..+.+..+... ..+
T Consensus 68 ~~~~~----~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~ 131 (343)
T 1ri6_A 68 APDDG----ALTFAAES--ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL----------DGC 131 (343)
T ss_dssp CTTTC----CEEEEEEE--ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC----------TTB
T ss_pred cCCCC----ceeecccc--ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC----------CCc
Confidence 62110 00122222 2234788999999999887665 48899999994 33444444432 347
Q ss_pred eEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcceE----Eeee-cCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccC
Q 014114 217 TSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM----SFDF-RETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRT 289 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~ 289 (430)
.+++| +|+++++++++ .++.|.+||+........ .+.. ....+..++|+|++++|+++ ..++.|.+|++..
T Consensus 132 ~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 132 HSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp CCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred eEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 78899 89999888877 899999999987232221 2222 23578899999999977655 4789999999953
Q ss_pred --CeE--EeEEecc-----ccCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CC--ceeeEEeeccccceeEEEeeec
Q 014114 290 --GKL--LGCFIGK-----CSGSIRSIARHPTLPIIASC-GLDSYLRFWDIK--TR--QLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 290 --~~~--~~~~~~~-----~~~~v~~i~~s~~~~~l~s~-~~d~~v~iwd~~--~~--~~~~~~~~~~~~~~~i~~~~~s 355 (430)
++. ...+... ....+..++|+|++++|+++ ..++.|.+||+. ++ +.+.. +..+ .. +..++|+
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~-~~-~~~~~~s 285 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF--QPTE-TQ-PRGFNVD 285 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE--EECS-SS-CCCEEEC
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee--ecCC-Cc-cceEEEC
Confidence 432 3333211 02357789999999887754 478999999998 33 33333 3222 22 5889999
Q ss_pred CCcce-eeec-CCCcEEEecCCC
Q 014114 356 DKEVA-NAAA-DAPMLEIQNGND 376 (430)
Q Consensus 356 ~~g~~-~~~~-~d~~v~vw~~~~ 376 (430)
|+|++ ++++ .++.+.+|+.+.
T Consensus 286 ~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 286 HSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp TTSSEEEEECTTTCEEEEEEEET
T ss_pred CCCCEEEEecCCCCeEEEEEEcC
Confidence 99997 5555 689999996653
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=6e-22 Score=178.82 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=193.6
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCC-ceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
++|++++.++.|.+||+.+++.+..+.... .. .+..+.+.+... ..++++..++.+.+|++....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~-------~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD-------AGPTPMVPMVAPGGR-------IAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTT-------CTTCCCCEEECTTSS-------EEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCC-------CCCCccceEEcCCCC-------EEEEEeCCCCeEEEEECCCCC
Confidence 478999999999999999998887775411 00 234455544322 245666778899999975432
Q ss_pred ccccCCcceeeEEeecc----CCceEEEEEcCCCCEEEEec------------CCCeEEEEECCCCceeeeecCCCCCCC
Q 014114 145 VSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
.+..+.... ...+..++|+|++++|+++. .++.|.+||+.+++.+..+...
T Consensus 68 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----- 134 (337)
T 1pby_B 68 --------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP----- 134 (337)
T ss_dssp --------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----
T ss_pred --------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----
Confidence 233333222 12567899999999998885 5789999999998887766542
Q ss_pred CcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC--------
Q 014114 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-------- 280 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------- 280 (430)
..+.+++| +|++++|+++ ++.|.+||+.+++ ....+..+.. ...+.|+|++..++..+..+
T Consensus 135 -----~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 203 (337)
T 1pby_B 135 -----RQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY 203 (337)
T ss_dssp -----SSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred -----CCcceeEE--CCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeee
Confidence 33677888 8999988887 6899999999865 3555554331 11337899998776654333
Q ss_pred ----------------CEEEEEccCCeEE-eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecc
Q 014114 281 ----------------DLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 281 ----------------~v~iwd~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 343 (430)
.|.+||+.+++.. ..+..+ ...+.+++|+|++++|+++ ++.|++||+.+++.+..+...
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~- 279 (337)
T 1pby_B 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP- 279 (337)
T ss_dssp EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-
T ss_pred ccccccccccccccccceEEEeCCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-
Confidence 3689999988765 223343 5678899999999999888 799999999999888775322
Q ss_pred ccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 344 HLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 344 ~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
..+.+++|+|+|++ ++++.++.|.+|+....
T Consensus 280 ---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 280 ---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ---SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ---CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 22578899999997 77788999999998764
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2e-22 Score=200.67 Aligned_cols=319 Identities=11% Similarity=0.038 Sum_probs=203.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhh-eecCCCCcc---------------eEEEEeccCCCCCCceEEEEccCCeEE
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVV-ERWGDPHSS---------------KCVLAASIDDSQNDPLLAVARKNGLTD 78 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~~p~g~~l~~g~~dg~i~ 78 (430)
.++++++.+| | +||+.++ +.+ ..+..+... ..+.++++ +|| .+++.+ .++.|.
T Consensus 36 ~~~~~~~~~~-i-~~d~~tg-----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~--spd-~~~~~~-~~~~i~ 104 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNKANG-----KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD--AGR-GLVVLF-TQGGLV 104 (706)
T ss_dssp TEEEEEETTE-E-EEEC------------CEEEEHHHHHTTC-----------CCCEEEEE--TTT-TEEEEE-ETTEEE
T ss_pred CeEEEEeCCc-E-EEECCCC-----cEeeEEeechhHhhhhccchhccccccccCceeEEE--CCC-CeEEEE-ECCEEE
Confidence 4677777888 8 9999876 221 222222100 12445555 667 455554 459999
Q ss_pred EeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee-----ecccccCCcce
Q 014114 79 ILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCST 153 (430)
Q Consensus 79 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~-----~~~~~~~~~~~ 153 (430)
+||+.+++....... . ..+..+.|.+.. ..++. ..++.+.+|++.. .........+.
T Consensus 105 ~~d~~~~~~~~l~~~-~--------~~~~~~~~SpdG--------~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 105 GFDMLARKVTYLFDT-N--------EETASLDFSPVG--------DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp EEETTTTEEEEEECC-T--------TCCTTCEECTTS--------SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred EEECCCCceEEccCC-c--------ccccCCcCCCCC--------CEEEE-EECCeEEEEecCcccccCCCcEEeccCCC
Confidence 999988765443322 1 233334554422 35655 4789999999875 32110000000
Q ss_pred eeEEe-----eccCCceEEEEEcCCCCEEEEec---------------------------------CCCeEEEEECCCCc
Q 014114 154 VKSWN-----VCASGTIAFSKVDISEKFSLFGG---------------------------------KGVEVNVWDLDKCE 195 (430)
Q Consensus 154 i~~~~-----~~~~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~v~iwd~~~~~ 195 (430)
-.+.. -.+...+.++.|+|++++|++++ .+..|++||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 00000 00112257899999999999887 45679999999887
Q ss_pred eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-----cEEEEECCCCCcceEEeee-cCC---CeEEEEe
Q 014114 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF-RET---PIKAVAE 266 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~-~~~---~i~~~~~ 266 (430)
......... +...+.+++| +|++++|++++.++ .|++||+.+++........ +.. .+.+++|
T Consensus 247 ~~~~~~~~~-------~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 247 TVYLQTGEP-------KEKFLTNLSW--SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEECCCCSC-------TTCEEEEEEE--CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred eEeeccCCC-------CceeEeeEEE--ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 654432211 1256889999 89999999887775 8999999987332332222 222 3467899
Q ss_pred eC--CCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccccCcEEE-EEEcCCCCEEEEEeC-CC----eEEEEeCCCCceee
Q 014114 267 EP--DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGL-DS----YLRFWDIKTRQLLS 337 (430)
Q Consensus 267 s~--~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~s~~~-d~----~v~iwd~~~~~~~~ 337 (430)
+| +|+++++++.++.++||++. ++..+..+..+ ...+.+ ++|+|+++.|+.++. ++ .|+.||+.+++. .
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~ 395 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K 395 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e
Confidence 99 99999999999999999886 66777777776 677877 799999988766554 44 677888877663 3
Q ss_pred EEeeccccceeEEEeeecCCcce-eeecC-C---CcEEEecCCCC
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA-NAAAD-A---PMLEIQNGNDT 377 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~-~~~~~-d---~~v~vw~~~~~ 377 (430)
. +. +... +.+++|+|||++ +.... + +.+.+|+....
T Consensus 396 ~--l~-~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 396 D--LT-PESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp E--SC-CSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred e--cc-CCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 3 22 3233 588999999998 44322 2 56999997653
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=2e-22 Score=178.26 Aligned_cols=257 Identities=11% Similarity=0.002 Sum_probs=181.9
Q ss_pred eecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-CceeeeeeecCCC
Q 014114 19 TFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDS 97 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~ 97 (430)
.++.++.|++||+.++ + ...+..|...+. ++.+ +|+|++|++++ ++.|.+||+.+ ++.......+
T Consensus 17 ~~~~~~~i~~~d~~~~-----~-~~~~~~~~~~v~--~~~~--spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~--- 82 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-----K-MRVVWQTPELFE--APNW--SPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF--- 82 (297)
T ss_dssp -CCCCEEEEEEETTTT-----E-EEEEEEESSCCE--EEEE--CTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT---
T ss_pred CCCcceeEEEEeCCCC-----c-eeeeccCCcceE--eeEE--CCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc---
Confidence 4567899999999874 3 334445666644 4445 67888999876 78999999988 7765554332
Q ss_pred CCCCCCCceEEEEeeccCccccccCCceEEEEc--cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC
Q 014114 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK 175 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 175 (430)
....+.++.|.+... .++++. .++...||.+.... +..+.+ .....+..++|+|+++
T Consensus 83 ----~~~~~~~~~~spdg~--------~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~--~~~~~~~~~~~spdg~ 141 (297)
T 2ojh_A 83 ----ATICNNDHGISPDGA--------LYAISDKVEFGKSAIYLLPSTG-------GTPRLM--TKNLPSYWHGWSPDGK 141 (297)
T ss_dssp ----CCCBCSCCEECTTSS--------EEEEEECTTTSSCEEEEEETTC-------CCCEEC--CSSSSEEEEEECTTSS
T ss_pred ----ccccccceEECCCCC--------EEEEEEeCCCCcceEEEEECCC-------CceEEe--ecCCCccceEECCCCC
Confidence 113455566655333 777777 44667777765322 122222 2234588899999999
Q ss_pred EEE-EecCCCeEEEEEC--CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcce
Q 014114 176 FSL-FGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 176 ~l~-~~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~ 251 (430)
+|+ ++..++.+.+|++ .++.. ..+..+. ..+.++.| +|++++|++++ .++.+.+|++.......
T Consensus 142 ~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~---------~~~~~~~~--s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 142 SFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGE---------GRNDGPDY--SPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCE-EECCCSS---------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred EEEEEECCCCceEEEEEECCCCcc-eEcccCC---------CccccceE--CCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 887 6778898999985 33333 3333322 56889999 89999887766 58999999986333346
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCC-----------CCEEEEEccCCeE--EeEEeccccCcEEEEEEcCCCCEEEE
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGS-----------GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s 318 (430)
..+..|...+.+++|+|++++|++++.+ +.|.+||+.+++. +..+.+| ...+.+++|+|++++|++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEE
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEE
Confidence 7777777889999999999999988766 4599999988765 4445466 778999999999999988
Q ss_pred EeCCC
Q 014114 319 CGLDS 323 (430)
Q Consensus 319 ~~~d~ 323 (430)
++.+.
T Consensus 289 ~~~~~ 293 (297)
T 2ojh_A 289 VRYFP 293 (297)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 87653
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=6.3e-22 Score=205.05 Aligned_cols=199 Identities=14% Similarity=0.069 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC--CCCcccCcceeEeEEeeC-CCCCEEEEEeCCCcEEE
Q 014114 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~ 241 (430)
+..++|+|+++.|+++ .++.|++||+... .+..+..+... .....+...+.+++| + |++++|++++ ++.|.+
T Consensus 247 ~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~--S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDF--SPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp SCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEE--EECGGGCEEEEE-TTEEEE
T ss_pred cceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeee--cCCCCCEEEEEE-cCEEEE
Confidence 4466788888877766 4778888888433 33344332110 001112346889999 8 9999999887 789999
Q ss_pred EECCCCCcceEEeeecCC-CeEEEEeeCCCCEEEEEcCCCCEE-EEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEE
Q 014114 242 YDTSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGNGSGDLA-SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
|++..+. ...+..|.. .+..++|+ +|+.|++++.++.+. +||+.+++.. .+.+| ...+..++|+|+|++|+++
T Consensus 322 ~~~~~~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 322 QDVSGTY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp ECTTSSB--EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECTTSSEEEEE
T ss_pred EcCCCCc--eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECCCCCEEEEE
Confidence 9998754 445666777 89999999 999999988888888 8999877654 34455 7899999999999999999
Q ss_pred eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC----------CcEEEecCCC
Q 014114 320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA----------PMLEIQNGND 376 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d----------~~v~vw~~~~ 376 (430)
+.++.|++||+.+++.... +.+|.. .+.+++|+|||++ ++++.+ +.|++|+...
T Consensus 397 ~~~~~v~~~d~~tg~~~~~--~~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKPTVI--ERSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp ETTSEEEEEETTTCCEEEE--EECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred CCCCeEEEEECCCCceEEe--ccCCCC-CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 9999999999999987765 444533 3588999999998 666554 4899999865
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=7.1e-22 Score=197.85 Aligned_cols=311 Identities=7% Similarity=0.003 Sum_probs=207.2
Q ss_pred cceEeecC-CC-----cEEEEEecCccCCcchhheecCCCCcc----------------------eEEEEeccCCCCCCc
Q 014114 15 LRALTFDS-LG-----LIKVIEARGEDGGVPKVVERWGDPHSS----------------------KCVLAASIDDSQNDP 66 (430)
Q Consensus 15 ~~l~t~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~p~g~ 66 (430)
.+|++++. || .|++||+.++ +....+..+... ..+..++| +|||+
T Consensus 49 ~~la~~~~~d~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~ 121 (741)
T 2ecf_A 49 SRVTFLRGKDSDRNQLDLWSYDIGSG-----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQ 121 (741)
T ss_dssp SEEEEEECCSSCTTEEEEEEEETTTC-----CEEEEECGGGTC--------------------CCEESCCCEE--CTTSS
T ss_pred CEEEEEeccCCCCcccEEEEEECCCC-----ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE--CCCCC
Confidence 35777777 88 8999999875 333333222111 12344555 88999
Q ss_pred eEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
+|++++. +.|.+||+.++. .+..+.. +...+..+.|.+... .++.++ ++.+.+|++....
T Consensus 122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------~~~~~~~~~~SPDG~--------~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQEGKAAVRQLTH--------GEGFATDAKLSPKGG--------FVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EEEEEET-TEEEEEESSSCSTTSCCBCCC--------SSSCEEEEEECTTSS--------EEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeC-CcEEEEECCCCCcceEEEccc--------CCcccccccCCCCCC--------EEEEEe-CCcEEEEecCCCC
Confidence 9999876 999999998772 2333332 224677777766333 666665 5689999876422
Q ss_pred ccccCCcceeeEEeecc---------------CCceEEEEEcCCCCEEEEecCCC-------------------------
Q 014114 145 VSAESSCSTVKSWNVCA---------------SGTIAFSKVDISEKFSLFGGKGV------------------------- 184 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~dg------------------------- 184 (430)
. .++..... ...+..++|+|++++|++++.|+
T Consensus 184 ~--------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 184 Q--------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp E--------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred E--------EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 1 11111000 01247899999999999887665
Q ss_pred --------eEEEEECCC-CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-----CCcEEEEECCCCCcc
Q 014114 185 --------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRRP 250 (430)
Q Consensus 185 --------~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~ 250 (430)
.|++||+.+ ++......... +...+..++| |++++|++++. +..|++||+.+++.
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~---pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~- 324 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKE-------QDIYLARVNW---RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ- 324 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSC-------SSEEEEEEEE---EETTEEEEEEEETTSSEEEEEEEETTTCCE-
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCC-------cceEEEEEEe---CCCCEEEEEEecccCCeEEEEEEECCCCce-
Confidence 789999988 76544332210 1256788888 47888887653 56899999998663
Q ss_pred eEEeeecCC----CeEEEEeeCCCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccccCcEEEE-EEcCCCCEEEE-EeCCC
Q 014114 251 VMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-ARHPTLPIIAS-CGLDS 323 (430)
Q Consensus 251 ~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~i-~~s~~~~~l~s-~~~d~ 323 (430)
...+..+.. .+..++|+|||+++++++.++.++||.+. .+. ...+..+ ...|..+ .|+|+++.|+. ++.++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 325 RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 455555443 45689999999999999999988888765 345 6677776 7788887 59999987754 44555
Q ss_pred --eEEEEeCCC-CceeeEEeeccccceeEEEeeecCCcce-eeecCC----CcEEEecCC
Q 014114 324 --YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA----PMLEIQNGN 375 (430)
Q Consensus 324 --~v~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d----~~v~vw~~~ 375 (430)
.++||++.. +..+.. +.. ...+..++|+|||+. +....+ ..+.+|+..
T Consensus 403 ~~~~~l~~~~~~g~~~~~--l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 403 ARESQIYAVPLQGGQPQR--LSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp TTCBEEEEEETTCCCCEE--CCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CceEEEEEEEcCCCCeee--ccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 899999864 554554 333 223589999999998 433222 467788764
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=7e-22 Score=197.90 Aligned_cols=294 Identities=13% Similarity=0.051 Sum_probs=199.1
Q ss_pred EEEeccCCCCCCceEEEEcc-CC-----eEEEeccCCCceeeeeeecCCCC----CCCCC------------CceEEEEe
Q 014114 54 VLAASIDDSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDSG----AQPED------------DGIVGLHL 111 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~----~~~~~------------~~i~~~~~ 111 (430)
+..+.| +|||++|++++. || .|.+||+.+++....+..+.... .+... ..+..+.|
T Consensus 39 ~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 39 LMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 455666 789999999988 88 89999999988766665422110 00000 11344555
Q ss_pred eccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEEC
Q 014114 112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~ 191 (430)
.+ ++..+++++. +.+.+|++...... .++.. ..+...+..++|+|++++|++++. +.|++||+
T Consensus 117 Sp--------Dg~~l~~~~~-~~i~~~d~~~~~~~------~~~~l-~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~ 179 (741)
T 2ecf_A 117 SP--------DAQRLLFPLG-GELYLYDLKQEGKA------AVRQL-THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDL 179 (741)
T ss_dssp CT--------TSSEEEEEET-TEEEEEESSSCSTT------SCCBC-CCSSSCEEEEEECTTSSEEEEEET-TEEEEEET
T ss_pred CC--------CCCEEEEEeC-CcEEEEECCCCCcc------eEEEc-ccCCcccccccCCCCCCEEEEEeC-CcEEEEec
Confidence 44 3336776665 99999998754100 11111 134567999999999999998874 58999999
Q ss_pred CCCceeeeecCCCCCCCCcccC--------cceeEeEEeeCCCCCEEEEEeCCC--------------------------
Q 014114 192 DKCEKIWTAKPPPKNSLGIFTP--------TWFTSAAFLSIDDHRKFVAGTNDH-------------------------- 237 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~~~~~dg-------------------------- 237 (430)
.+++.......+.... ..... ..+..+.| +||+++|++++.|+
T Consensus 180 ~~g~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTI-GNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp TTTEEEECCCCCCSSE-EESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred CCCCEEEeccCCccce-eccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 9887665443322100 00000 11467899 89999999988765
Q ss_pred -------cEEEEECCC-CCcceEEee--ecCCCeEEEEeeCCCCEEEEEcC-----CCCEEEEEccCCeEEeEEeccccC
Q 014114 238 -------QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 238 -------~i~~wd~~~-~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
.|.+||+.+ ++. ..... .|...+..++| |||++|++++. +..|++||+.+++....+..+...
T Consensus 257 g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT 334 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence 788999987 653 33222 36678999999 99999987654 467999999999887777665222
Q ss_pred ---cEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeEEeeccccceeEEEe-eecCCcce--eeecCCC--cEEEec
Q 014114 303 ---SIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDS-AFADKEVA--NAAADAP--MLEIQN 373 (430)
Q Consensus 303 ---~v~~i~~s~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~--~~~~~d~--~v~vw~ 373 (430)
.+.+++|+|||+++++++.|+.++||.+. +++ ... +..+... +..+ .|+|+|+. ++++.++ .+++|+
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~--l~~~~~~-v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA--LTHGNWS-VDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE--SCCSSSC-EEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee--eeecceE-EEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 45689999999999999999987887665 344 444 5455333 4666 69999986 4555555 889998
Q ss_pred CC
Q 014114 374 GN 375 (430)
Q Consensus 374 ~~ 375 (430)
..
T Consensus 411 ~~ 412 (741)
T 2ecf_A 411 VP 412 (741)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=4.9e-21 Score=172.60 Aligned_cols=277 Identities=10% Similarity=0.041 Sum_probs=183.7
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc-CCeEEEeccCCCce-eeee
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDL-RVAI 91 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~-~~~~ 91 (430)
...++++..++.|.+||+.++ ++...+..+... . .+.+ +|+|++|++++. ++.|.+||+.+++. ...+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~--~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-----EILNQITLGYDF--V-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-----CEEEEEECCCCE--E-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEecCCCeEEEEeCccc-----ceeeeEEccCCc--c-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 345788889999999999875 444454444333 2 5555 778887766554 89999999998887 5555
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC---eeEEEEeeeecccccCCcceeeEEeeccCCceEEE
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g---~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..+. .+..++.+.+.. ..++++..++ .+.+|++.... .+... .......++
T Consensus 80 ~~~~--------~~~~~~~~s~dg--------~~l~~~~~~~~~~~i~v~d~~~~~--------~~~~~--~~~~~~~~~ 133 (331)
T 3u4y_A 80 QEGQ--------SSMADVDITPDD--------QFAVTVTGLNHPFNMQSYSFLKNK--------FISTI--PIPYDAVGI 133 (331)
T ss_dssp EECS--------SCCCCEEECTTS--------SEEEECCCSSSSCEEEEEETTTTE--------EEEEE--ECCTTEEEE
T ss_pred ccCC--------CCccceEECCCC--------CEEEEecCCCCcccEEEEECCCCC--------eEEEE--ECCCCccce
Confidence 5432 122225554433 3666544442 89999975322 23333 234567899
Q ss_pred EEcCCCCEEEEe-cCCCe-EEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE-eCCCcEEEEECC
Q 014114 169 KVDISEKFSLFG-GKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTS 245 (430)
Q Consensus 169 ~~~~~~~~l~~~-~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~wd~~ 245 (430)
+|+|++++|+++ ..++. |.+|++.....+....... +........++| +|++++++++ ..++.|.+||+.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~--spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF-----ISGGTRPFNITF--TPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE-----ECSSSSEEEEEE--CTTSSEEEEEETTTTEEEEEECS
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc-----ccCCCCccceEE--CCCCCEEEEEeCCCCeEEEEECC
Confidence 999999866554 55577 9999987644332211000 001134788899 8999866554 468999999998
Q ss_pred CCCc--ceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeE--EeEEecc------ccCcEEEEEEcCCCC
Q 014114 246 AQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK------CSGSIRSIARHPTLP 314 (430)
Q Consensus 246 ~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~--~~~~~~~------~~~~v~~i~~s~~~~ 314 (430)
+++. .+..+.. ...+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ .......++|+|+++
T Consensus 207 ~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 207 NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 7553 0444443 36778999999999776665 577899999999887 4443321 012235689999999
Q ss_pred EEEEEe-CCCeEEEEeCCCCc
Q 014114 315 IIASCG-LDSYLRFWDIKTRQ 334 (430)
Q Consensus 315 ~l~s~~-~d~~v~iwd~~~~~ 334 (430)
+|++++ .++.|.+||+....
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCCCcEEEEEecCCc
Confidence 886665 56799999997644
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=8.7e-21 Score=196.54 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=156.5
Q ss_pred ceEEEEEc-CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCc-ceeEeEEeeCCCCCEEEEEeCCCcEE-
Q 014114 164 TIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVR- 240 (430)
Q Consensus 164 ~i~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~- 240 (430)
.+.+++|+ |++++|++++ ++.|.+|++..+.... +..+. . .+..++| + +++.|++++.+..+.
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~---------~~~~~~~~~--s-dg~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPL---------RIRYVRRGG--D-TKVAFIHGTREGDFLG 362 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCS---------CEEEEEECS--S-SEEEEEEEETTEEEEE
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCC---------cceEEeeeE--c-CCCeEEEEECCCceEE
Confidence 57899999 9999998877 7899999998876543 33322 3 5888888 8 999999999888888
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+||+..++ ...+..|...+..++|+|+|++|++++.++.|++||+.+++....+..| ...+.+++|+|||++|++++
T Consensus 363 ~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 363 IYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEE
T ss_pred EEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEe
Confidence 99998754 3444577789999999999999999999999999999999888777777 88899999999999998887
Q ss_pred CCC----------eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 321 LDS----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 321 ~d~----------~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
.++ .|++||+.+++ +.. +..+... +..++|+|||+. ++++.++...+|+..
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~--l~~~~~~-~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRK-IFA--ATTENSH-DYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTE-EEE--CSCSSSB-EEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cCccccccCCCCCeEEEEECCCCc-EEE--eeCCCcc-cCCceEcCCCCEEEEEecccCCcCcchh
Confidence 654 89999999887 443 4455333 578999999998 778887877888754
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.7e-21 Score=194.48 Aligned_cols=308 Identities=9% Similarity=0.011 Sum_probs=194.3
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcc-eEEEEeccCCCCCCceEEEEccC---------CeEEEeccC
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSS-KCVLAASIDDSQNDPLLAVARKN---------GLTDILNPL 83 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~d---------g~i~iwd~~ 83 (430)
..+++..+.||.|++||+.++ +....+..+... ..+..+++ +|||++|++++.+ +.|.+||+.
T Consensus 27 dg~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 27 DTEFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp SSCBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CCcEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 345666688999999999986 444455444431 01334555 7789999998764 788899998
Q ss_pred CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC-
Q 014114 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS- 162 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~- 162 (430)
+++. ..+.... .+...+..+.|.+. +..++.++. +.+.+|++..... .++......
T Consensus 100 ~~~~-~~l~~~~-----~~~~~~~~~~~SPd--------G~~la~~~~-~~i~~~~~~~g~~--------~~~~~~~~~~ 156 (723)
T 1xfd_A 100 HGDP-QSLDPPE-----VSNAKLQYAGWGPK--------GQQLIFIFE-NNIYYCAHVGKQA--------IRVVSTGKEG 156 (723)
T ss_dssp SCCC-EECCCTT-----CCSCCCSBCCBCSS--------TTCEEEEET-TEEEEESSSSSCC--------EEEECCCBTT
T ss_pred CCce-EeccCCc-----cccccccccEECCC--------CCEEEEEEC-CeEEEEECCCCce--------EEEecCCCCC
Confidence 8875 2232211 11122444445442 236666655 7899998764321 122111111
Q ss_pred ----------------CceEEEEEcCCCCEEEEecCCC----------------------------------eEEEEECC
Q 014114 163 ----------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLD 192 (430)
Q Consensus 163 ----------------~~i~~~~~~~~~~~l~~~~~dg----------------------------------~v~iwd~~ 192 (430)
..+.+++|+|++++|++++.++ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 1337899999999999887543 79999998
Q ss_pred CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC----CCcEEEEECCCCCcceEEeee-cCCCe----EE
Q 014114 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPI----KA 263 (430)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~-~~~~i----~~ 263 (430)
+++....+..+.. ...+...+..++| +||+++|++... +..|++||+.+++. ...+.. +...+ ..
T Consensus 237 ~~~~~~~l~~~~~---~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 237 GPTHDLEMMPPDD---PRMREYYITMVKW--ATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp SSCCCEECCCCCC---GGGSSEEEEEEEE--SSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCC
T ss_pred CCceeEEeeCCcc---CCCccceeEEEEE--eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCCC
Confidence 8876555543310 0011256889999 899998877643 35799999998663 444433 33444 37
Q ss_pred EEeeCCCCEEEE--EcCCC------CEEEEE-ccCCe--EEeEEeccccCcEEE-EEEcCCCCEEEEEeCC---CeEEEE
Q 014114 264 VAEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGLD---SYLRFW 328 (430)
Q Consensus 264 ~~~s~~~~~l~~--~~~dg------~v~iwd-~~~~~--~~~~~~~~~~~~v~~-i~~s~~~~~l~s~~~d---~~v~iw 328 (430)
++|+|||+.|+. +..++ .|.+|| ...++ +...+..+ ...+.. ++|+|+|+.|+..+.+ +.++||
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 899999997775 44566 467777 34443 14445443 344554 6999999998766655 789999
Q ss_pred eCCCCc--eeeEEeeccc--cceeEEEeeecCCcce
Q 014114 329 DIKTRQ--LLSAVFLKQH--LNEVVFDSAFADKEVA 360 (430)
Q Consensus 329 d~~~~~--~~~~~~~~~~--~~~~i~~~~~s~~g~~ 360 (430)
++.... .... +... ....+..++|+|||++
T Consensus 390 ~~~~~~~~~~~~--l~~~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 390 SANTVGNFNRQC--LSCDLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp EECSSTTCCCBC--SSTTSSSSCCCCEEEECTTSSE
T ss_pred EEeCCCCCCcce--ecccccCCCCeEEEEECCCCCE
Confidence 986432 2222 3321 1233578999999998
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=7.1e-22 Score=197.33 Aligned_cols=291 Identities=8% Similarity=-0.046 Sum_probs=194.4
Q ss_pred EEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC--
Q 014114 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-- 132 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-- 132 (430)
..+.| +|||+++++ +.||.|++||+.+++....+..+... ...+.++.+.+... .+++++.+
T Consensus 20 ~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~-----~~~v~~~~~SpDg~--------~l~~~~~~~~ 83 (723)
T 1xfd_A 20 PEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-----SLRAIRYEISPDRE--------YALFSYNVEP 83 (723)
T ss_dssp CCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-----TTTCSEEEECTTSS--------EEEEEESCCC
T ss_pred cccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc-----ccccceEEECCCCC--------EEEEEecCcc
Confidence 44555 889998776 78999999999999887666543210 01366677766433 77777654
Q ss_pred -------CeeEEEEeeeecccccCCcceeeEEee--ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 133 -------GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 133 -------g~i~v~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
+.+.+|++..... +.... .+...+..++|+|+++.|++++. +.|++||+.+++.......+
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~---------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~ 153 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDP---------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG 153 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCC---------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC
T ss_pred ceeecceeeEEEEECCCCce---------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC
Confidence 6788998764321 11111 12334788999999999998876 78999999988776554433
Q ss_pred CCCCCCcccC---------cceeEeEEeeCCCCCEEEEEeCCC----------------------------------cEE
Q 014114 204 PKNSLGIFTP---------TWFTSAAFLSIDDHRKFVAGTNDH----------------------------------QVR 240 (430)
Q Consensus 204 ~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~ 240 (430)
........++ ..+.++.| +||+++|++++.++ .|+
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 2111000000 12378899 99999999987553 799
Q ss_pred EEECCCCCcceEEeeec------CCCeEEEEeeCCCCEEEEEcC----CCCEEEEEccCCeEEeEEeccccCcEE----E
Q 014114 241 LYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR----S 306 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~v~----~ 306 (430)
+||+.+++. ...+..+ ...+..++|+|||++|++.+. +..|++||+.++++...+..++...+. .
T Consensus 232 ~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 232 VIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 999988653 3445443 567899999999998877643 356999999999877666544344443 7
Q ss_pred EEEcCCCCEEEE--EeCCC------eEEEEe-CCCCce--eeEEeeccccceeEEEeeecCCcce-eee-cCC--CcEEE
Q 014114 307 IARHPTLPIIAS--CGLDS------YLRFWD-IKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADA--PMLEI 371 (430)
Q Consensus 307 i~~s~~~~~l~s--~~~d~------~v~iwd-~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~-~~~-~~d--~~v~v 371 (430)
++|+|||+.|+. +..++ .|++|| ..+++. ... +..........++|+|||+. +.. ..+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS--ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB--SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE--eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 899999997765 44677 577788 444441 333 32222233334799999998 444 444 78999
Q ss_pred ecCCC
Q 014114 372 QNGND 376 (430)
Q Consensus 372 w~~~~ 376 (430)
|+.+.
T Consensus 389 ~~~~~ 393 (723)
T 1xfd_A 389 YSANT 393 (723)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98754
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=4.5e-22 Score=185.58 Aligned_cols=210 Identities=10% Similarity=0.029 Sum_probs=155.2
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC------CCCCCcccCcceeEeEEeeCCCCCEEE----E
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFV----A 232 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~----~ 232 (430)
..+..+++++++.++++++.++ +++|+............+. .....+.+...|.+++| +|++++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEec
Confidence 3577889999999999999887 8888753211100000000 00001122356999999 89999999 7
Q ss_pred EeCCCcEEEEECCCC-----C--cc---eEEeeecCCCeEEEEeeCC-CCEEEEEcCCCCEEEEEccCCeEEeEEecccc
Q 014114 233 GTNDHQVRLYDTSAQ-----R--RP---VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 233 ~~~dg~i~~wd~~~~-----~--~~---~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 301 (430)
++.|+.|++||+.+. + ++ +..+.+|...|.+++|+|+ +.+|++++.||.|++||++++..+....+| .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-T 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-G
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-C
Confidence 888999999998653 1 11 3455668899999999998 789999999999999999999877777777 8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc----ceeEEEeeecCCccee--eecCCC------cE
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL----NEVVFDSAFADKEVAN--AAADAP------ML 369 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~~--~~~~d~------~v 369 (430)
..|++++|+|+|++|++|+.||.|++||++ ++....+...... ...+.+++|++++.++ +...+| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 899999999999999999999999999998 6655553222111 1257999999998883 233333 38
Q ss_pred EEecCCCC
Q 014114 370 EIQNGNDT 377 (430)
Q Consensus 370 ~vw~~~~~ 377 (430)
++|+....
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 89998754
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=4.5e-19 Score=161.80 Aligned_cols=301 Identities=10% Similarity=0.040 Sum_probs=183.1
Q ss_pred cceEee----cCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccC----CeEEEeccCC--
Q 014114 15 LRALTF----DSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN-- 84 (430)
Q Consensus 15 ~~l~t~----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d----g~i~iwd~~~-- 84 (430)
..++.| +.++.|.+|+++. ..+....+..+ +......++ + +|+|++|++++.+ +.|.+|++..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~-~~g~~~~~~~~--~~~~p~~l~--~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNE-ETGESLPLSDA--EVANPSYLI--P--SADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEET-TTCCEEEEEEE--ECSCCCSEE--E--CTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeC-CCCCEEEeecc--cCCCCceEE--E--CCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 455665 4567899998865 22222223333 233322334 4 6788899998875 7999998865
Q ss_pred CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec----
Q 014114 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---- 160 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~---- 160 (430)
++......... .......+.+ + .. ..+++...++.+.+|++....... .........
T Consensus 87 g~~~~~~~~~~------~~~~p~~~~~-d-g~-------~l~~~~~~~~~v~~~~~~~~g~~~----~~~~~~~~~g~~~ 147 (361)
T 3scy_A 87 GTLHLLNTQKT------MGADPCYLTT-N-GK-------NIVTANYSGGSITVFPIGQDGALL----PASDVIEFKGSGP 147 (361)
T ss_dssp TEEEEEEEEEC------SSSCEEEEEE-C-SS-------EEEEEETTTTEEEEEEBCTTSCBC----SCSEEEECCCCCS
T ss_pred CcEEEeeEecc------CCCCcEEEEE-C-CC-------EEEEEECCCCEEEEEEeCCCCcCc----ccceeEEccCCCC
Confidence 43322211110 1123444555 2 11 144445578899999986422110 011111111
Q ss_pred -----cCCceEEEEEcCCCCEEEEe-cCCCeEEEEECCCCce------e------eeecCCCCCCCCcccCcceeEeEEe
Q 014114 161 -----ASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEK------I------WTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 161 -----~~~~i~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~------~------~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
+...+.+++|+|++++|+++ ..++.|.+|++..... + ....... ......++|
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~- 218 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP--------GSGPRHLIF- 218 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT--------TCCEEEEEE-
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC--------CCCCeEEEE-
Confidence 12346889999999976655 4588999998875331 1 1111111 144678999
Q ss_pred eCCCCCEEEEEe-CCCcEEEEECCCCCc-ceEEee---ecCCCeEEEEeeCCCCEEEEEcCC--CCEEEEEcc--CCe--
Q 014114 223 SIDDHRKFVAGT-NDHQVRLYDTSAQRR-PVMSFD---FRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK-- 291 (430)
Q Consensus 223 ~~~~~~~l~~~~-~dg~i~~wd~~~~~~-~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d--g~v~iwd~~--~~~-- 291 (430)
+|+++++++++ .++.|.+||+.++.. .+..+. .+......++|+|+|++|+++..+ +.|.+|++. +++
T Consensus 219 -spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 219 -NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp -CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred -cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 89999887777 689999999986431 122222 223456899999999998776654 889999995 444
Q ss_pred EEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEE--eCCCCceeeEEeeccccceeEEEeeec
Q 014114 292 LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFW--DIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iw--d~~~~~~~~~~~~~~~~~~~i~~~~~s 355 (430)
.+..+.. ...+.+++|+|+|++|++++ .++.|.+| |..+++..... ...+.. .+.|+.|.
T Consensus 298 ~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~-~~~~~~-~p~~v~~~ 360 (361)
T 3scy_A 298 KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK-KDIKVD-KPVCLKFV 360 (361)
T ss_dssp EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS-CCEECS-SEEEEEEE
T ss_pred EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc-eeeeCC-CCeEEEEc
Confidence 3444443 45678999999999988887 67899996 55567655431 111222 25788775
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=2.8e-19 Score=162.25 Aligned_cols=278 Identities=11% Similarity=0.045 Sum_probs=175.0
Q ss_pred cCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEcc---CCeEEEeccCCCce--eeeeeecC
Q 014114 21 DSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDL--RVAISNAG 95 (430)
Q Consensus 21 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~~~ 95 (430)
+.++.|.+|+++. ..+....+.... +.... ..+.+ +|+|+ |++++. ++.|.+|++.+++. +..+..+.
T Consensus 13 ~~~~~i~v~~~d~-~tg~~~~~~~~~-~~~~p--~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~ 85 (347)
T 3hfq_A 13 KTSQGIYQGTLDT-TAKTLTNDGLLA-ATQNP--TYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG 85 (347)
T ss_dssp SSCCEEEEEEEET-TTTEEEEEEEEE-ECSCC--CCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES
T ss_pred CCCCCEEEEEEcC-CCCeEEEeeeee-ccCCc--ceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC
Confidence 3456799998875 222222222222 22222 23444 66888 555444 68999999976653 22222211
Q ss_pred CCCCCCCCCceEEEEeeccCccccccCCceEEEEc-cCCeeEEEEeeeecccccCCcceeeEEeec--------cCCceE
Q 014114 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIA 166 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~--------~~~~i~ 166 (430)
..+..+.+.+... .+++++ .++.+.+|++...... ..+...... ....+.
T Consensus 86 --------~~p~~~a~spdg~--------~l~~~~~~~~~v~v~~~~~~g~~-----~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 86 --------TPPAYVAVDEARQ--------LVYSANYHKGTAEVMKIAADGAL-----TLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp --------CCCSEEEEETTTT--------EEEEEETTTTEEEEEEECTTSCE-----EEEEEEECCCCCSSTTCSSCCEE
T ss_pred --------CCCEEEEECCCCC--------EEEEEeCCCCEEEEEEeCCCCCe-----eecceeecCCCCCCccccCCCce
Confidence 2445566655333 666665 7899999998632110 112211111 123488
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECC-CCceeee--ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCCCcEEEE
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLY 242 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~~w 242 (430)
+++|+|+++++++...++.|.+|++. +++.... +.... ...+..++| +|+++++++ ...++.|.+|
T Consensus 145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------g~~p~~~~~--spdg~~l~v~~~~~~~v~v~ 214 (347)
T 3hfq_A 145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA--------GFGPRHLVF--SPDGQYAFLAGELSSQIASL 214 (347)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEE
T ss_pred EEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC--------CCCCceEEE--CCCCCEEEEEeCCCCEEEEE
Confidence 99999999977777778999999998 4543221 11111 134677899 899996655 5678899999
Q ss_pred ECCC--CCc-ceEEeeecC------CCeEEEEeeCCCCEEE-EEcCCCCEEEEEcc---CCeEEeEEeccccCcEEEEEE
Q 014114 243 DTSA--QRR-PVMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 243 d~~~--~~~-~~~~~~~~~------~~i~~~~~s~~~~~l~-~~~~dg~v~iwd~~---~~~~~~~~~~~~~~~v~~i~~ 309 (430)
++.. ++. .+..+.... ..+..++|+|+|++|+ +...++.|.+|++. +.+.+..+..+ ...+..++|
T Consensus 215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~ 293 (347)
T 3hfq_A 215 KYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDL 293 (347)
T ss_dssp EEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEE
T ss_pred EecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEE
Confidence 9874 221 122222222 3588899999999875 45568999999996 33556666665 567899999
Q ss_pred cCCCCEEEEEeCC-CeEEEE--eCCCCceee
Q 014114 310 HPTLPIIASCGLD-SYLRFW--DIKTRQLLS 337 (430)
Q Consensus 310 s~~~~~l~s~~~d-~~v~iw--d~~~~~~~~ 337 (430)
+|+|++|++++.+ +.|.+| |..+++...
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 9999988888754 899999 556676654
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.1e-20 Score=183.82 Aligned_cols=267 Identities=10% Similarity=-0.040 Sum_probs=182.8
Q ss_pred EEEeccCCCCCCceEEEEcc-CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-
Q 014114 54 VLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT- 131 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (430)
+.++.+ +|||++||+++. ||+++||++.+++... +..+. ...+..+.|.+. ..++++..
T Consensus 24 ~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~-------~~~~~~~~~spd---------~~l~~~~~~ 84 (582)
T 3o4h_A 24 KYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREP-------INSVLDPHYGVG---------RVILVRDVS 84 (582)
T ss_dssp EEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSC-------CSEECEECTTCS---------EEEEEEECS
T ss_pred hheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEe-eeccc-------ccccccccCCCC---------eEEEEeccC
Confidence 445555 678899999876 9999999986555433 32211 123444444321 25555554
Q ss_pred --CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCC--EEEEecCCCeEEEEECCCCceeeeecCCCCCC
Q 014114 132 --KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 132 --~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 207 (430)
+....+|.+..... +... .+.....+...+|+|+++ .++++..+ .+.+||+.+++.......+
T Consensus 85 ~g~~~~~l~~~~~~~~------g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~---- 151 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRP------GEEQ--RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP---- 151 (582)
T ss_dssp TTSCCEEEEEEETTST------TCCE--ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES----
T ss_pred CCCcceEEEEEeccCC------Cccc--cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC----
Confidence 34456776653111 1111 111222344567777765 44444444 4559999888765444321
Q ss_pred CCcccCcceeEeEEeeCCCCCEEEEEeCC----CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC--C
Q 014114 208 LGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--D 281 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~ 281 (430)
. .+++| +|||++|++++.+ ..|++||+.+++ ...+..|...+..++|+|||++|+++..++ .
T Consensus 152 ------~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 152 ------G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAREAR 219 (582)
T ss_dssp ------S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSSCEE
T ss_pred ------C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEccCCCeeE
Confidence 2 56778 8999999988877 789999998865 456778888899999999999999888888 8
Q ss_pred EEEEEccCCeEEeEEeccccCcEEEEE--------EcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEee
Q 014114 282 LASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~i~--------~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 353 (430)
|++||+.+++.. .+..+ ...+..++ |+|||.++++++.|+.++||++ ++.+.. . ...+.+++
T Consensus 220 i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--~----~~~v~~~~ 289 (582)
T 3o4h_A 220 LVTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--P----QGNHGRVV 289 (582)
T ss_dssp EEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--C----SSEEEEEE
T ss_pred EEEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--C----CCceEEEE
Confidence 999999988877 66665 66677777 9999988999999999999999 665542 2 23468899
Q ss_pred ecCCcce-eeecCCC---cEEEecCC
Q 014114 354 FADKEVA-NAAADAP---MLEIQNGN 375 (430)
Q Consensus 354 ~s~~g~~-~~~~~d~---~v~vw~~~ 375 (430)
|+ +|++ ++++.+. .+.+|+..
T Consensus 290 ~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 290 LW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 99 8888 6666553 46666654
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=1.7e-19 Score=163.60 Aligned_cols=293 Identities=11% Similarity=0.043 Sum_probs=184.4
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCC-cceEEEEeccCCCCCCceEE-EEccCCeEEEeccCCCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPH-SSKCVLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..+++++.++.|.+||+.++ +.+..+..+. ... ..+.+ +|+|++++ ++..++.|.+||+.+++.+..+.
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~--~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGP--GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSS--CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCC-----cEEEEEecCCCCCC--ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 45778889999999999875 4455554332 122 23344 66777654 56678999999999888777665
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC------------CeeEEEEeeeecccccCCcceeeEEeec
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------------GKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~i~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
...... .....+..+.+.+. +..++++..+ +.+.+|++...... ..+..+.
T Consensus 83 ~~~~~~--~~~~~~~~~~~spd--------g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~-- 145 (349)
T 1jmx_B 83 LSSVPG--EVGRSMYSFAISPD--------GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-----KPVRTFP-- 145 (349)
T ss_dssp SCCSTT--EEEECSSCEEECTT--------SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-----CCSEEEE--
T ss_pred cccccc--cccccccceEECCC--------CCEEEEEcccccccccccccCCCeEEEEECCCcccc-----ceeeecc--
Confidence 311000 00011334555443 2367776654 89999998653211 1233333
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCc--------c---cC----cceeEeEEeeCC
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI--------F---TP----TWFTSAAFLSID 225 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--------~---~~----~~v~~~~~~~~~ 225 (430)
+...+.+++|+|+++ +++++. .|.+||+.+++.+..+.......... + .. .....+++ .+
T Consensus 146 ~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 220 (349)
T 1jmx_B 146 MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR--FK 220 (349)
T ss_dssp CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE--C-
T ss_pred CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee--cC
Confidence 334688999999999 555544 49999999998877665432100000 0 00 01233444 33
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc
Q 014114 226 DHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 226 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 303 (430)
++....... ....+..+|..+++.....+..+...+..++|+| ++++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~ 296 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHT 296 (349)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSC
T ss_pred CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCC
Confidence 321110000 0111223555554433333344566789999999 99999988 88999999999998888775 345
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec
Q 014114 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 342 (430)
+.+++|+|++++|++++.++.|++||+.+++.+..+.+.
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 789999999998888888999999999999988886544
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=4.3e-19 Score=161.23 Aligned_cols=247 Identities=10% Similarity=0.018 Sum_probs=181.2
Q ss_pred ceEEEEeeccCccccccCCceEEEEcc-------CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEE
Q 014114 105 GIVGLHLFKRQREESSSRSRTLLTCTT-------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
.+..+.+.+... .+++++. ++.+.+|+..... .+..+. ....+..++|+|+++++
T Consensus 42 ~~~~~~~s~dg~--------~l~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~--~~~~~~~~~~s~dg~~l 103 (353)
T 3vgz_A 42 GAYEMAYSQQEN--------ALWLATSQSRKLDKGGVVYRLDPVTLE--------VTQAIH--NDLKPFGATINNTTQTL 103 (353)
T ss_dssp SEEEEEEETTTT--------EEEEEECCCTTTEESEEEEEECTTTCC--------EEEEEE--ESSCCCSEEEETTTTEE
T ss_pred CccceEECCCCC--------EEEEEcCCCcCCCCCccEEEEcCCCCe--------EEEEEe--cCCCcceEEECCCCCEE
Confidence 445566655332 5555553 5678888865322 333333 24557889999999865
Q ss_pred E-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe--CCCcEEEEECCCCCcceEEe
Q 014114 178 L-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 178 ~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~ 254 (430)
+ +...++.|.+||+.+++.+..+..+.........+..+.++.| +|+++++++++ .++.|.+||+.+++ .+..+
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~ 180 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIK-LKTAI 180 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTE-EEEEE
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCc-eEEEe
Confidence 5 4566799999999999988777654322111111223678899 88998877766 47889999999865 36666
Q ss_pred eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc---ccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 014114 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGL-DSYLRFWDI 330 (430)
Q Consensus 255 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~~-d~~v~iwd~ 330 (430)
..+...+..++|+|++++|++++.++.|.+||+.+++.+..+... +...+.+++|+|++++++.++. ++.|.+||+
T Consensus 181 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 645566889999999999999999999999999999988877641 1456889999999997776664 599999999
Q ss_pred CCCceeeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCCCC
Q 014114 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~~ 377 (430)
.+++.+..+.... . ..++|+|+|.. ++...++.|.+||....
T Consensus 261 ~~~~~~~~~~~~~----~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 261 RNGNILAKVAAPE----S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp TTCCEEEEEECSS----C-CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CCCcEEEEEEcCC----C-ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 9999888754322 1 56899999985 55667899999998653
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=5.3e-20 Score=171.56 Aligned_cols=196 Identities=7% Similarity=-0.021 Sum_probs=143.3
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCc--ceee----EEeeccCCceEEEEEcCCCCEEE----EecCCCeEEEEECCC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSC--STVK----SWNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDLDK 193 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~--~~i~----~~~~~~~~~i~~~~~~~~~~~l~----~~~~dg~v~iwd~~~ 193 (430)
+.+++++.++ +.||+............ ..+. .....+...|.+++|+|++++|+ +|+.|+.|++||+.+
T Consensus 49 ~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~ 127 (434)
T 2oit_A 49 GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRT 127 (434)
T ss_dssp TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccc
Confidence 3788887777 88877542211100000 1111 11233456799999999999999 789999999999865
Q ss_pred C--------ce---eeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 194 C--------EK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 194 ~--------~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
+ +. +..+.. |...|.+++| +|+ +.+|++++.||+|++||++++. .+.....|...|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v 195 (434)
T 2oit_A 128 FSNEAKQQKRPFAYHKLLKD---------AGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAV 195 (434)
T ss_dssp HHCTTCSSCCCSEEEECCCS---------GGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCE
T ss_pred cccCCcCCcceeeeeeccCC---------CCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCce
Confidence 4 11 222222 2377999999 777 7899999999999999999864 355566788899
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc------ccCcEEEEEEcCCCCEEEEE-eCCC------eEEEE
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASC-GLDS------YLRFW 328 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~~v~~i~~s~~~~~l~s~-~~d~------~v~iw 328 (430)
.+++|+|+|++|++|+.||.|++||++ ++....+..+ |...|.+++|++++.++++. +.|| .+++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 6665555443 12389999999998877553 3443 39999
Q ss_pred eCCCC
Q 014114 329 DIKTR 333 (430)
Q Consensus 329 d~~~~ 333 (430)
++...
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99865
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.2e-19 Score=180.66 Aligned_cols=276 Identities=13% Similarity=0.053 Sum_probs=176.9
Q ss_pred CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC-----CceeeeeeecCC
Q 014114 22 SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGD 96 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~ 96 (430)
.++.|++||+.++ + ...+..+... +..+.| +|||++|+++ .++.|.+||+.+ ++..........
T Consensus 99 ~~~~i~~~d~~~~-----~-~~~l~~~~~~--~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 99 TQGGLVGFDMLAR-----K-VTYLFDTNEE--TASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp ETTEEEEEETTTT-----E-EEEEECCTTC--CTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred ECCEEEEEECCCC-----c-eEEccCCccc--ccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 5699999999874 3 2233334333 233444 7899999985 789999999988 766543332111
Q ss_pred CC------CCCCCCceEEEEeeccCccccccCCceEEEEc---------------------------------cCCeeEE
Q 014114 97 SG------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------------------------------TKGKASM 137 (430)
Q Consensus 97 ~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~g~i~v 137 (430)
.. ...+...+.++.|.+.. ..|++++ .+..+.+
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg--------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKG--------SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTS--------SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred CeEcccchhhhhcCCCceEEECCCC--------CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 00 00000112345554432 3666665 2345666
Q ss_pred EEeeeecccccCCcceeeEEe-eccCCceEEEEEcCCCCEEEEecCCC-----eEEEEECCCCceeeeec-CCCCCCCCc
Q 014114 138 RSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAK-PPPKNSLGI 210 (430)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~-~~~~~~~~~ 210 (430)
|++.... ...+.. ..+...+.+++|+|++++|++++.++ .|++||+.+++....+. ......
T Consensus 240 ~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~--- 308 (706)
T 2z3z_A 240 YHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY--- 308 (706)
T ss_dssp EETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC---
T ss_pred EECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe---
Confidence 6654221 111111 12445689999999999999877665 89999999984333322 111000
Q ss_pred ccCcceeEeEEeeCC--CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEE-EEeeCCCCEEEEEcCC-C----CE
Q 014114 211 FTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGS-G----DL 282 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d-g----~v 282 (430)
...+..+.| +| ++++++++..++.+++|++......+..+..+...+.. ++|+|+++.|+.++.+ + .|
T Consensus 309 --~~~~~~~~~--sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 --VEPLHPLTF--LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp --CCCCSCCEE--CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred --ECccCCcee--ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 012467789 88 99999999999999999876323346677777777877 7999999887665544 4 56
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQ 334 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----~~v~iwd~~~~~ 334 (430)
..||+.+++ ...+. + ...+.+++|+|+|++|+..+.+ +.|++||+.+++
T Consensus 385 ~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 385 YCIDIKGGK-TKDLT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEETTCCC-CEESC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEcCCCC-ceecc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 667776665 33333 3 6679999999999988776543 569999998877
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=3.4e-18 Score=155.12 Aligned_cols=239 Identities=13% Similarity=0.118 Sum_probs=154.6
Q ss_pred EEEEcc---CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEec-CCCeEEEEECCC-C--ceee
Q 014114 126 LLTCTT---KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDK-C--EKIW 198 (430)
Q Consensus 126 ~~~~~~---~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~-~--~~~~ 198 (430)
+++++. ++.+.+|++..... ..+... ..+...+..++|+|++++|++++ .++.|.+|++.. + ..+.
T Consensus 53 l~~~~~~~~~~~v~~~~~~~g~~------~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~ 125 (347)
T 3hfq_A 53 LYSVDKEDDEGGIAAWQIDGQTA------HKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTD 125 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTEE------EEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCceEEEEEecCCcE------EEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecc
Confidence 555544 58899999853210 111111 12456788999999999888877 679999999963 2 2233
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce--EEeeec-CCCeEEEEeeCCCCEEEE
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFDFR-ETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~-~~~i~~~~~s~~~~~l~~ 275 (430)
.+...............+.+++| +|+++++++...++.|.+|++....... ..+..+ ...+..++|+|+|++|++
T Consensus 126 ~~~~~~~~p~~~~~~~~~~~~~~--spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 126 TVQHSGHGPRPEQDGSHIHYTDL--TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEECCCCCSSTTCSSCCEEEEEE--CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred eeecCCCCCCccccCCCceEEEE--CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence 33221111000011245788999 8999966666678899999998322212 222222 236788999999996665
Q ss_pred -EcCCCCEEEEEccC--CeE--EeEEecccc-----CcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC-C--ceeeEEee
Q 014114 276 -GNGSGDLASVDIRT--GKL--LGCFIGKCS-----GSIRSIARHPTLPII-ASCGLDSYLRFWDIKT-R--QLLSAVFL 341 (430)
Q Consensus 276 -~~~dg~v~iwd~~~--~~~--~~~~~~~~~-----~~v~~i~~s~~~~~l-~s~~~d~~v~iwd~~~-~--~~~~~~~~ 341 (430)
+..++.|.+|++.. ++. +..+..... ..+..++|+|+|++| ++...++.|.+|++.. + +.+.. +
T Consensus 204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~--~ 281 (347)
T 3hfq_A 204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ--I 281 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE--E
T ss_pred EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE--E
Confidence 56778999999874 543 333333211 458899999999987 4556789999999973 2 33333 3
Q ss_pred ccccceeEEEeeecCCcce-eee-cCCCcEEEecCCC
Q 014114 342 KQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQNGND 376 (430)
Q Consensus 342 ~~~~~~~i~~~~~s~~g~~-~~~-~~d~~v~vw~~~~ 376 (430)
..+ ...+..++|+|||++ +++ ..++.+.+|+.+.
T Consensus 282 ~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 282 STE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp ECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 332 223588999999997 444 4568999996643
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=1e-18 Score=158.41 Aligned_cols=232 Identities=16% Similarity=0.176 Sum_probs=167.8
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeec
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
...+++++.++.+.+|++.... .+..+.......+..++|+|++++++ ++..++.|.+||+.+++.+..+.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDT--------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTE--------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCc--------EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3478888999999999975422 33344433222578899999998665 55678999999999998877665
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC------------CcEEEEECCCCCc--ceEEeeecCCCeEEEEee
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------------HQVRLYDTSAQRR--PVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------------g~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~s 267 (430)
...... .....+..++| +|++++|++++.+ +.|.+||+.+++. .+..+.. ...+.+++|+
T Consensus 83 ~~~~~~---~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPG---EVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAA 156 (349)
T ss_dssp SCCSTT---EEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEEC
T ss_pred cccccc---cccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeEC
Confidence 322100 00123677889 8999999998865 8999999987432 1233333 3468899999
Q ss_pred CCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc-----------------------------------------------
Q 014114 268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----------------------------------------------- 300 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------------------------------------- 300 (430)
|+++ +++++. .|.+||+.+++.+..+..+.
T Consensus 157 ~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 9999 666543 49999999888776654321
Q ss_pred --------------------cCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 301 --------------------SGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 301 --------------------~~~v~~i~~s~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
...+.+++|+| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSSSS
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCCCC
Confidence 01355778889 99998888 889999999999988775322 2247899999998
Q ss_pred e-eeecCCCcEEEecCCCC
Q 014114 360 A-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~~~~~ 377 (430)
+ ++++.++.|.+||....
T Consensus 308 ~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp CEEEESBSSEEEEEETTTT
T ss_pred EEEEecCCCeEEEEecccc
Confidence 7 77788899999998653
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.2e-17 Score=150.55 Aligned_cols=281 Identities=9% Similarity=0.027 Sum_probs=173.2
Q ss_pred eEEEEc----cCCeEEEeccC--CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC----CeeE
Q 014114 67 LLAVAR----KNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKAS 136 (430)
Q Consensus 67 ~l~~g~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~ 136 (430)
++++|+ .++.|.+|.+. +++.......+. .....+.+.+. +..+++++.+ +.+.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~--------~~p~~l~~spd--------g~~l~~~~~~~~~~~~v~ 78 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV--------ANPSYLIPSAD--------GKFVYSVNEFSKDQAAVS 78 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC--------SCCCSEEECTT--------SSEEEEEECCSSTTCEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC--------CCCceEEECCC--------CCEEEEEEccCCCCCcEE
Confidence 455553 45689999763 454433222111 12333555443 2367777765 7999
Q ss_pred EEEeeeecccccCCcceeeEE-eec-cCCceEEEEEcCCCCEEEEec-CCCeEEEEECCCCceeeeecC---CCC--CCC
Q 014114 137 MRSIEVTKVSAESSCSTVKSW-NVC-ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP---PPK--NSL 208 (430)
Q Consensus 137 v~~~~~~~~~~~~~~~~i~~~-~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~---~~~--~~~ 208 (430)
+|++.... +.+... ... +......+++ ++++|+++. .++.|.+|++.....+..+.. +.. ...
T Consensus 79 ~~~~~~~~-------g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~ 149 (361)
T 3scy_A 79 AFAFDKEK-------GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDK 149 (361)
T ss_dssp EEEEETTT-------TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCT
T ss_pred EEEEeCCC-------CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCc
Confidence 99986421 122221 222 3445677777 777776665 688999999975433222110 000 000
Q ss_pred CcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCc------ce------EEeeecCCCeEEEEeeCCCCEEEE
Q 014114 209 GIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR------PV------MSFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~------~~------~~~~~~~~~i~~~~~s~~~~~l~~ 275 (430)
.......+.+++| +|++++|++++ .++.|.+|++..... .. .....+......++|+|+|+++++
T Consensus 150 ~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 150 ERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp TTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred cccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence 0011234678999 89999766655 588999999875431 11 112223456789999999998877
Q ss_pred Ec-CCCCEEEEEccCCeE--EeEEecc--ccCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCC--CCceeeEEeeccccc
Q 014114 276 GN-GSGDLASVDIRTGKL--LGCFIGK--CSGSIRSIARHPTLPIIASCGL--DSYLRFWDIK--TRQLLSAVFLKQHLN 346 (430)
Q Consensus 276 ~~-~dg~v~iwd~~~~~~--~~~~~~~--~~~~v~~i~~s~~~~~l~s~~~--d~~v~iwd~~--~~~~~~~~~~~~~~~ 346 (430)
++ .++.|.+||+.+++. +..+... +...+..++|+|+|++|+++.. ++.|.+|++. +++......+.. .
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g 305 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--G 305 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--S
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--C
Confidence 76 689999999987754 3333321 1345789999999999877665 4899999985 455322211222 2
Q ss_pred eeEEEeeecCCcce-eeec-CCCcEEEecCCC
Q 014114 347 EVVFDSAFADKEVA-NAAA-DAPMLEIQNGND 376 (430)
Q Consensus 347 ~~i~~~~~s~~g~~-~~~~-~d~~v~vw~~~~ 376 (430)
..+.+++|+|||++ ++++ .++.|.+|..+.
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 33578999999997 4444 679999986654
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=180.69 Aligned_cols=325 Identities=10% Similarity=0.008 Sum_probs=196.6
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcc-eEEEEeccCCCCCCceEEEEcc---------CCeEEEeccC
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSS-KCVLAASIDDSQNDPLLAVARK---------NGLTDILNPL 83 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~---------dg~i~iwd~~ 83 (430)
..+++..+.||.|++||+.++ +....+..+... ..+..+.+ +|||++|++++. ++.|++||+.
T Consensus 26 dg~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 26 GQEYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp SSEEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCeEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 356777778999999999885 333333333220 01334455 789999999876 7899999998
Q ss_pred CCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcc-eeeEEeeccC
Q 014114 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCAS 162 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~-~i~~~~~~~~ 162 (430)
+++.+..... . ..+..+.|.+.. ..|+.+ .++.|++|++..........++ ...+++ .+.
T Consensus 99 ~g~~~~~~~l-~--------~~~~~~~~SPDG--------~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~-g~~ 159 (719)
T 1z68_A 99 NGEFVRGNEL-P--------RPIQYLCWSPVG--------SKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFN-GIP 159 (719)
T ss_dssp TTEECCSSCC-C--------SSBCCEEECSST--------TCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEE-SSC
T ss_pred CCccccceec-C--------cccccceECCCC--------CEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEc-ccc
Confidence 8876311111 0 134456665533 366665 4789999988643321000000 000111 111
Q ss_pred ---------CceEEEEEcCCCCEEEEecCCC----------------------------------eEEEEECCCCcee--
Q 014114 163 ---------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI-- 197 (430)
Q Consensus 163 ---------~~i~~~~~~~~~~~l~~~~~dg----------------------------------~v~iwd~~~~~~~-- 197 (430)
....+++|+|+|++|++++.|. .|++||+.+++..
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 1125899999999999887552 7889999887653
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC----CcEEEEE----CCCCCcceEEe----eecCCCeE---
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK--- 262 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~wd----~~~~~~~~~~~----~~~~~~i~--- 262 (430)
..+.... .-..+...+..++| +||++++++.... ..|.+|| +.+++. ...+ ..|...+.
T Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~--SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 240 QEVPVPA---MIASSDYYFSWLTW--VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp EECCCCH---HHHTSCEEEEEEEE--SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEEEEECSSSCSSSSS
T ss_pred eEccCCc---cCCCCcceEEEeEE--eCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEecccccCCceEcccc
Confidence 1111100 00012256889999 8998777764432 2488899 766442 2233 35666666
Q ss_pred --EEEeeCCCCEEEE--EcCCC--CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 014114 263 --AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIK 331 (430)
Q Consensus 263 --~~~~s~~~~~l~~--~~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d-----~~v~iwd~~ 331 (430)
.+.|+|||+.|+. +..++ .|.+||+.+++ ...+..+ ...+..+.++ +++.|+..+.+ +.+++|.+.
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 8899999986654 44555 46677876665 3445444 5668888877 88777766654 788888875
Q ss_pred C--Cce-eeEEeecc----ccceeEEEeeecCCcce-e-eecCC--CcEEEecCCC
Q 014114 332 T--RQL-LSAVFLKQ----HLNEVVFDSAFADKEVA-N-AAADA--PMLEIQNGND 376 (430)
Q Consensus 332 ~--~~~-~~~~~~~~----~~~~~i~~~~~s~~g~~-~-~~~~d--~~v~vw~~~~ 376 (430)
. +.. ... +.. + ...+..+.|+|+|++ + +.+.. ..+.+|+...
T Consensus 391 ~~~g~~~~~~--l~~~~~~~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 391 IGSYPPSKKC--VTCHLRKE-RCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp CSSSSCCEEE--SSTTTTTT-TBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred CCCCCCCcee--ccCccCCC-CCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 3 321 222 221 2 233578899999987 3 33333 4677887643
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=1.2e-17 Score=152.49 Aligned_cols=284 Identities=12% Similarity=0.014 Sum_probs=173.4
Q ss_pred cceEeecCC--CcEEEEEecCccCCcchhheecC-CCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC-CCceeee
Q 014114 15 LRALTFDSL--GLIKVIEARGEDGGVPKVVERWG-DPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~d--g~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~ 90 (430)
.+++.|+.. +.|.+|+++. +.+....+.... ..... +..+++ +|+|++|++++.+ .|.+|++. +++....
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~-~~g~l~~~~~~~~~~~~~--~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~ 76 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDD-EKLTCKLIKRTEIPQDEP--ISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHE 76 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEET-TTTEEEEEEEEECCTTCC--CSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEE
T ss_pred EEEEEEEccCCCcEEEEEEEC-CCCCEEEeeEEccCCCCC--CcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEe
Confidence 456666653 5688888753 112222222211 11122 233444 7788899998887 99999997 7765443
Q ss_pred eeecCCCCCCCCCCceEEEEeeccCccccccCCce--EEEEc-------------cCCeeEEEEeeeecccccCCcceee
Q 014114 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCT-------------TKGKASMRSIEVTKVSAESSCSTVK 155 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~g~i~v~~~~~~~~~~~~~~~~i~ 155 (430)
..... . .....+.+.+ ++.. ++++. .+|.+.+|++..... ....+.
T Consensus 77 ~~~~~------~-g~~~~~~~sp--------dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~ 137 (365)
T 1jof_A 77 ASHPI------G-GHPRANDADT--------NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQ 137 (365)
T ss_dssp EEEEC------C-SSGGGGCTTS--------CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEE
T ss_pred eEeec------C-CCCccEEECC--------CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEe
Confidence 32110 0 0111112211 1222 23332 588899999863211 011233
Q ss_pred EEeeccCCceEEEEEcCCCCEEEEec-CCCeEEEEECC-CCcee--eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE
Q 014114 156 SWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLD-KCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
.+...+...+.+++|+|++++|+++. .++.|++|++. +++.. ..+.... +...+..++| +|++++++
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~--spdg~~l~ 208 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLY 208 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEE--CCCCCEEE
Confidence 33223456799999999999888765 46799999998 66543 2222110 0144788999 89999988
Q ss_pred EEeC-CCcEEEEECC--CCCcc--eEEee-------ecCC------CeEEEE-eeCCCCEEEEEcCCC------CEEEEE
Q 014114 232 AGTN-DHQVRLYDTS--AQRRP--VMSFD-------FRET------PIKAVA-EEPDSFNIYIGNGSG------DLASVD 286 (430)
Q Consensus 232 ~~~~-dg~i~~wd~~--~~~~~--~~~~~-------~~~~------~i~~~~-~s~~~~~l~~~~~dg------~v~iwd 286 (430)
+++. ++.|.+|++. +++.. ...+. +|.. .+..++ |+|||++|+++..+. .|.+|+
T Consensus 209 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~ 288 (365)
T 1jof_A 209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK 288 (365)
T ss_dssp EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred EEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence 8775 7899999875 33321 11121 1122 488999 999999988776432 799999
Q ss_pred cc-CCeEEe---EEeccccCcEEEEEEcC---CCCEEEEEeCC-CeEEEEeCCCC
Q 014114 287 IR-TGKLLG---CFIGKCSGSIRSIARHP---TLPIIASCGLD-SYLRFWDIKTR 333 (430)
Q Consensus 287 ~~-~~~~~~---~~~~~~~~~v~~i~~s~---~~~~l~s~~~d-~~v~iwd~~~~ 333 (430)
+. +++... .+..+ ...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 289 ~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 289 LRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 96 566543 23333 45567899999 89999999864 89999998765
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=3.2e-18 Score=166.43 Aligned_cols=257 Identities=11% Similarity=0.027 Sum_probs=175.2
Q ss_pred cceEeecC-CCcEEEEEecCccCCcchhheecCCCC-cceEEEEeccCCCCCCceEEEEcc---CCeEEEeccCC---Cc
Q 014114 15 LRALTFDS-LGLIKVIEARGEDGGVPKVVERWGDPH-SSKCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN---GD 86 (430)
Q Consensus 15 ~~l~t~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~---~~ 86 (430)
.+|+.++. ||.++||++.++ . ...+..+. .. +....| +|| +++++++. +....||.+.. +.
T Consensus 34 ~~la~~s~~~g~~~lw~~~~g-----~-~~~lt~~~~~~--~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~ 102 (582)
T 3o4h_A 34 DKLLVVGFSEGSVNAYLYDGG-----E-TVKLNREPINS--VLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGE 102 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETT-----E-EEECCSSCCSE--ECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred CeEEEEEccCCceeEEEEcCC-----C-cEeeecccccc--cccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence 34666655 999999999764 2 34444444 34 445566 677 77777765 45566665533 22
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceE
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.. .+... .......+.... ...+++...++.+.+|++.... ..++... .. .
T Consensus 103 ~~-~l~~~---------~~~~~~~~s~dg-------~~~~~~s~~~~~~~l~d~~~g~--------~~~l~~~--~~--~ 153 (582)
T 3o4h_A 103 EQ-RLEAV---------KPMRILSGVDTG-------EAVVFTGATEDRVALYALDGGG--------LRELARL--PG--F 153 (582)
T ss_dssp CE-ECTTS---------CSBEEEEEEECS-------SCEEEEEECSSCEEEEEEETTE--------EEEEEEE--SS--C
T ss_pred cc-cccCC---------CCceeeeeCCCC-------CeEEEEecCCCCceEEEccCCc--------EEEeecC--CC--c
Confidence 22 22111 122233443322 1244555555556699886432 2222221 12 7
Q ss_pred EEEEcCCCCEEEEecCC----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC--cEE
Q 014114 167 FSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~ 240 (430)
+++|+|+|++|++++.+ +.|++||+.+++.. .+..+. ..+..++| +|||++|+++..++ .|+
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~---------~~~~~~~~--SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE---------GSFSSASI--SPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS---------CEEEEEEE--CTTSCEEEEEECSSCEEEE
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC---------CccccceE--CCCCCEEEEccCCCeeEEE
Confidence 89999999999988776 78999999887764 444432 56789999 99999999888888 899
Q ss_pred EEECCCCCcceEEeeecCCCeEEEE--------eeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
+||+.+++. . .+..|...+..++ |+|||.++++++.++.+++|++ ++... .. .+.|.+++|+ +
T Consensus 222 ~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-d 292 (582)
T 3o4h_A 222 TVDPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-R 292 (582)
T ss_dssp EECTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-T
T ss_pred EEcCCCCcE-E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-C
Confidence 999998664 4 6667776777777 9999988899999999999999 76654 22 5678999999 9
Q ss_pred CCEEEEEeCCC---eEEEEeCCC
Q 014114 313 LPIIASCGLDS---YLRFWDIKT 332 (430)
Q Consensus 313 ~~~l~s~~~d~---~v~iwd~~~ 332 (430)
++++++++.+. .+++||..+
T Consensus 293 g~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 293 GKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETTCC
T ss_pred CEEEEEEcCCCCCCeEEEEcCCC
Confidence 99998888774 477777653
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=4e-17 Score=149.07 Aligned_cols=281 Identities=12% Similarity=0.019 Sum_probs=173.2
Q ss_pred eEEEEccC--CeEEEecc--CCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 67 LLAVARKN--GLTDILNP--LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 67 ~l~~g~~d--g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
+|++|+.. +.|.+|++ .++++...-.... +....+..+.+.+.. ..+++++.+ .+.+|++..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~-----~~~~~~~~~a~spdg--------~~l~~~~~~-~v~~~~~~~ 69 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEI-----PQDEPISWMTFDHER--------KNIYGAAMK-KWSSFAVKS 69 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEEC-----CTTCCCSEEEECTTS--------SEEEEEEBT-EEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEcc-----CCCCCCcEEEECCCC--------CEEEEEccc-eEEEEEECC
Confidence 35666543 56887765 3454322211100 011234445655433 367777777 899999862
Q ss_pred ecccccCCcceeeEEeeccCCceEEEEEcCCCCE--EEEec-------------CCCeEEEEECC-CCceeeeecCCCCC
Q 014114 143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGG-------------KGVEVNVWDLD-KCEKIWTAKPPPKN 206 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~dg~v~iwd~~-~~~~~~~~~~~~~~ 206 (430)
.. ....+......+.+..++|+|++++ ++++. .++.+.+|++. +++....+.....
T Consensus 70 ~g-------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~- 141 (365)
T 1jof_A 70 PT-------EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY- 141 (365)
T ss_dssp TT-------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-
T ss_pred CC-------CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-
Confidence 11 1122222211233556899999994 55554 68899999997 4554433321000
Q ss_pred CCCcccCcceeEeEEeeCCCCCEEEEEeC-CCcEEEEECC-CCCcc-eEEee--ecCCCeEEEEeeCCCCEEEEEcC-CC
Q 014114 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTS-AQRRP-VMSFD--FRETPIKAVAEEPDSFNIYIGNG-SG 280 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~wd~~-~~~~~-~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-dg 280 (430)
.+...+.+++| +|++++|+++.. ++.|++||+. +++.. +..+. .|...+..++|+|+|++|++++. ++
T Consensus 142 ----~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 142 ----QENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp ----CTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred ----CCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 01145889999 899998887664 6799999998 55421 22333 23567899999999999888764 68
Q ss_pred CEEEEEcc--CCeEE---eEEecc------ccC------cEEEEE-EcCCCCEEEEEeCC-C-----eEEEEeCC-CCce
Q 014114 281 DLASVDIR--TGKLL---GCFIGK------CSG------SIRSIA-RHPTLPIIASCGLD-S-----YLRFWDIK-TRQL 335 (430)
Q Consensus 281 ~v~iwd~~--~~~~~---~~~~~~------~~~------~v~~i~-~s~~~~~l~s~~~d-~-----~v~iwd~~-~~~~ 335 (430)
.|.+|++. +++.. ..+... +.. .+..++ |+|||++|++++.+ . .|.+|++. +++.
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence 89999765 56542 222211 011 588999 99999988777643 2 89999996 5665
Q ss_pred eeEEe-eccccceeEEEeeecC---Ccce-eeecC-CCcEEEecCCC
Q 014114 336 LSAVF-LKQHLNEVVFDSAFAD---KEVA-NAAAD-APMLEIQNGND 376 (430)
Q Consensus 336 ~~~~~-~~~~~~~~i~~~~~s~---~g~~-~~~~~-d~~v~vw~~~~ 376 (430)
..... ...+ ......++|+| ||++ ++++. ++.|.+|+.+.
T Consensus 296 ~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 296 EKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 43211 2222 22236789999 8988 56654 58999998865
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=7.4e-17 Score=146.70 Aligned_cols=294 Identities=10% Similarity=0.022 Sum_probs=187.4
Q ss_pred CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEc----------cCCeEEEeccCCCceeeee
Q 014114 22 SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~ 91 (430)
.|+.|.+||..++ +++..+..+..+ .+.+ +|||++|+++. .++.|.+||..+++.+..+
T Consensus 29 ~d~~v~v~D~~t~-----~~~~~i~~g~~p----~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNG-----KFLGMVPTAFNG----HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTC-----CEEEEEECCEEE----EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCC-----eEEEEecCCCCC----ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3789999998875 455555443222 4555 78999999876 3678999999988888887
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc--CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEE
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
...... + ........+.+.+.. ..++++.. ++.+.+|++.... .+... +...+ ...+.
T Consensus 98 ~~~~~~-~-~~g~~p~~i~~spdg--------~~l~v~n~~~~~~v~v~d~~~~~--------~~~~~-i~~~~-~~~v~ 157 (361)
T 2oiz_A 98 SLPPKR-V-QGLNYDGLFRQTTDG--------KFIVLQNASPATSIGIVDVAKGD--------YVEDV-TAAAG-CWSVI 157 (361)
T ss_dssp EECTTB-C-CBCCCGGGEEECTTS--------SEEEEEEESSSEEEEEEETTTTE--------EEEEE-GGGTT-EEEEE
T ss_pred EcCccc-c-ccCCCcceEEECCCC--------CEEEEECCCCCCeEEEEECCCCc--------EEEEE-ecCCC-cceeE
Confidence 652110 0 011223335554433 36666653 5789999876432 22110 22222 23355
Q ss_pred EcCCC-CEEEEecCCCeEEEEECCC-CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC
Q 014114 170 VDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 170 ~~~~~-~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 247 (430)
+.|++ ..+++.+.||.+.+|++.. ++........ ...... ... ..+.+ .+++..++..+.++.|.++|+...
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~--~~~~~~-~~~-~~~~~--~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK--QMFSVK-DDP-IFIAP--ALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC--CCSCTT-TSC-BCSCC--EECSSEEEEEBTTSEEEEEECSSS
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc--ceEcCC-CCc-eEEEe--cccCCEEEEEeCCCeEEEEEecCC
Confidence 66754 6777788899999999865 5444221100 000000 011 11222 356677777788999999999754
Q ss_pred Ccce-EEeee------cC----CCeEEEEeeCCCCEEEEEcC-----------CCCEEEEEccCCeEEeEEeccccCcEE
Q 014114 248 RRPV-MSFDF------RE----TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 248 ~~~~-~~~~~------~~----~~i~~~~~s~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
...+ ..+.. +. .....++|+|+++.++++.. .+.|.+||+.+++.+..+..+ . +.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~ 308 (361)
T 2oiz_A 232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--AL 308 (361)
T ss_dssp SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CC
T ss_pred CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--ee
Confidence 3211 11111 00 11223789999888877643 347999999999999999986 4 99
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEEeeccccceeEEEeeecCCcc
Q 014114 306 SIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
+|+|+|+|++|++++. +.|.+||..++ +.+..+ ... +.....++++|+|.
T Consensus 309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i--~~~-G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI--EGA-AEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE--TTS-CSSEEEEEECCCSC
T ss_pred EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe--ccC-CCCcEEEEecCCCC
Confidence 9999999999998887 99999999999 888874 222 22348889999985
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=176.82 Aligned_cols=282 Identities=7% Similarity=-0.077 Sum_probs=180.9
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc---------C
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------K 132 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 132 (430)
+|+|++++++ .|+.|++||+.+++....+..+... ...+.++.+.+.. ..++.++. +
T Consensus 24 s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg--------~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 24 ISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDR--------QFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp SSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTS--------SEEEEEEEEEECSSSCEE
T ss_pred CCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCC--------CeEEEEecCceeEEeecc
Confidence 7888766655 6999999999998877666543200 0125556665533 36777665 6
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
+.+.+|++...... ....+ ...+..++|+|+|+.|+++. ++.|++|++.+++................+
T Consensus 90 ~~i~~~d~~~g~~~--------~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 90 ATYYIYDLSNGEFV--------RGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp EEEEEEETTTTEEC--------CSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred eEEEEEECCCCccc--------cceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 88999987643310 00011 24578899999999999875 779999999888765432221110000001
Q ss_pred Ccc---------eeEeEEeeCCCCCEEEEEeCCC----------------------------------cEEEEECCCCCc
Q 014114 213 PTW---------FTSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYDTSAQRR 249 (430)
Q Consensus 213 ~~~---------v~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~~wd~~~~~~ 249 (430)
+.+ ..++.| +||+++|++++.|. .|++||+.+++.
T Consensus 159 ~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp CCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred ccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 122 257899 99999999987652 788999987542
Q ss_pred c--eE-----EeeecCCCeEEEEeeCCCCEEEEEcCC----CCEEEEE----ccCCeEEeEE----eccccCcEE-----
Q 014114 250 P--VM-----SFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSGSIR----- 305 (430)
Q Consensus 250 ~--~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~iwd----~~~~~~~~~~----~~~~~~~v~----- 305 (430)
. +. .+..|...+..++|+||++++++.... ..|.+|| +.++++...+ ..| ...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~ 315 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVS 315 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCC
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCC
Confidence 1 11 123477789999999998777764433 2388899 8777765555 344 66666
Q ss_pred EEEEcCCCCEEEE--EeCCC--eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e-eecC----CCcEEEecCC
Q 014114 306 SIARHPTLPIIAS--CGLDS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N-AAAD----APMLEIQNGN 375 (430)
Q Consensus 306 ~i~~s~~~~~l~s--~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~-~~~~----d~~v~vw~~~ 375 (430)
.+.|+|||+.|+. ...++ .|++||+.+++. .. +..+... +..+.+. ++.. + ++.. ++..++|..+
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~--lt~~~~~-v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQ--ITSGKWE-AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EE--CSCSSSC-EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Ee--cccCceE-EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 7899999986544 44555 577888877763 33 3333222 4566666 6665 4 4433 4788888765
Q ss_pred C
Q 014114 376 D 376 (430)
Q Consensus 376 ~ 376 (430)
.
T Consensus 391 ~ 391 (719)
T 1z68_A 391 I 391 (719)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=2e-17 Score=152.31 Aligned_cols=272 Identities=10% Similarity=0.023 Sum_probs=173.9
Q ss_pred CCCCceEEEEcc-CC--eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 62 SQNDPLLAVARK-NG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 62 ~p~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
+|||++|+.++. +| .|.+||+.+++.......+. ..+....|.+. +..|+.+..++.+.+|
T Consensus 44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--------~~~~~~~~spd--------g~~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--------DNTFGGFLSPD--------DDALFYVKDGRNLMRV 107 (388)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--------BCSSSCEECTT--------SSEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--------CCccceEEcCC--------CCEEEEEeCCCeEEEE
Confidence 899999998877 67 48888988887665544321 11112344443 3478888888899999
Q ss_pred EeeeecccccCCcceeeEEeeccCCceEEE--EEcCCCCEEEE----------------------ecCCCeEEEEECCCC
Q 014114 139 SIEVTKVSAESSCSTVKSWNVCASGTIAFS--KVDISEKFSLF----------------------GGKGVEVNVWDLDKC 194 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~--~~~~~~~~l~~----------------------~~~dg~v~iwd~~~~ 194 (430)
++.... ...++.. +...+... .++|++.+++. ...+..|++||+.++
T Consensus 108 d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 108 DLATLE--------ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ETTTCC--------EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred ECCCCc--------ceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 976432 2233332 23334333 34889988874 224578999999988
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCC------CcEEEEECCCCCcceEEeeecC--CCeEEEE
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFRE--TPIKAVA 265 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~--~~i~~~~ 265 (430)
+........ ..+..+.| +| +++.|+....+ ..|.++|+.... ...+..+. ..+..++
T Consensus 179 ~~~~l~~~~----------~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 179 ESTVILQEN----------QWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CEEEEEEES----------SCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEE
T ss_pred ceEEeecCC----------ccccccEE--CCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccce
Confidence 755443221 45788899 89 99988887753 378888887543 34444443 3578899
Q ss_pred eeCCCCEEEEEcC-CC----CEEEEEccCCeE--EeEEeccccCc---EEEEEEcCCCCEEEEE---------eCCCeEE
Q 014114 266 EEPDSFNIYIGNG-SG----DLASVDIRTGKL--LGCFIGKCSGS---IRSIARHPTLPIIASC---------GLDSYLR 326 (430)
Q Consensus 266 ~s~~~~~l~~~~~-dg----~v~iwd~~~~~~--~~~~~~~~~~~---v~~i~~s~~~~~l~s~---------~~d~~v~ 326 (430)
|+|||+.|+..+. ++ .|++||+.+++. +..+.++ ... ...+.|+|||+.|+.. ..+..|+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 9999997765443 22 399999998874 3333331 111 1123799999887754 4566899
Q ss_pred EEeCCCCceeeEEeeccccce----------eEEEeeecCCcce--eeecCCCcEEEecCCC
Q 014114 327 FWDIKTRQLLSAVFLKQHLNE----------VVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 327 iwd~~~~~~~~~~~~~~~~~~----------~i~~~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+||+.+++.... ..+... .+..++|+|||+. +++..++...+|..+.
T Consensus 324 ~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 324 VFNMKNGTQHRV---ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEETTTTEEEEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred EEeccCCceEEe---ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 999998775432 222220 2477899999987 4455677777776543
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=4.6e-15 Score=130.53 Aligned_cols=247 Identities=10% Similarity=0.101 Sum_probs=167.5
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-C
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-K 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~ 132 (430)
...+++ .|+|.++++...++.|.+||.. ++.+..+..... ...+...+..+.+.+... ..+++... +
T Consensus 32 p~~v~~--~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~~~~~p~~i~~~~~~g-------~l~v~~~~~~ 99 (286)
T 1q7f_A 32 PSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDSQLLYPNRVAVVRNSG-------DIIVTERSPT 99 (286)
T ss_dssp EEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS--STTCBSSEEEEEEETTTT-------EEEEEECGGG
T ss_pred CceEEE--CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC--CcccccCceEEEEEcCCC-------eEEEEcCCCC
Confidence 344444 5677888888889999999985 666555532110 011223456666633222 24444433 7
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
+.+.+|+... ..+..+.......+..++++++++++++...++.|.+||.. ++.+..+.... .
T Consensus 100 ~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------~ 162 (286)
T 1q7f_A 100 HQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------H 162 (286)
T ss_dssp CEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------T
T ss_pred CEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------c
Confidence 8888887321 12333333334568899999999988887888999999964 55555543211 1
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec--CCCeEEEEeeCCCCEEEEEcCCC-CEEEEEccC
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLASVDIRT 289 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg-~v~iwd~~~ 289 (430)
...+..+++ +++++++++...++.|++||... + .+..+..+ ...+..++++++|+++++...++ .|.+||. +
T Consensus 163 ~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 163 LEFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp CSSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred cCCcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence 145788999 88898888877899999999854 3 24455433 35789999999998888887776 9999996 5
Q ss_pred CeEEeEEeccc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 290 GKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 290 ~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
++.+..+..+. ...+.+++++|+|+++++ +.|+.|++|++....+
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 67777776541 234789999999987777 6799999999865443
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=5.3e-15 Score=130.09 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=168.2
Q ss_pred ceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee-----ccCCceEEEEE-cCCCCEEE
Q 014114 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKV-DISEKFSL 178 (430)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-----~~~~~i~~~~~-~~~~~~l~ 178 (430)
.+.++.+.+. +..+++...++.+.+|+... ..+..+.. .+...+..+++ .+++.+++
T Consensus 31 ~p~~v~~~~~--------g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 31 EPSGVAVNAQ--------NDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp CEEEEEECTT--------CCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred CCceEEECCC--------CCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence 4555665432 23677778889999998542 12222221 12246789999 46776666
Q ss_pred EecC-CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee--
Q 014114 179 FGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-- 255 (430)
Q Consensus 179 ~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-- 255 (430)
+... ++.|.+|| .+++.+..+.... ...+..+++ +++++++++...++.|.+||... + .+..+.
T Consensus 94 ~~~~~~~~i~~~d-~~g~~~~~~~~~~--------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~ 160 (286)
T 1q7f_A 94 TERSPTHQIQIYN-QYGQFVRKFGATI--------LQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCS 160 (286)
T ss_dssp EECGGGCEEEEEC-TTSCEEEEECTTT--------CSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-C-EEEEEECT
T ss_pred EcCCCCCEEEEEC-CCCcEEEEecCcc--------CCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCC
Confidence 6543 78999999 5677666553321 145788999 78998888877889999999753 3 244443
Q ss_pred ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc-ccCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCC
Q 014114 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTR 333 (430)
Q Consensus 256 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~~d~-~v~iwd~~~~ 333 (430)
.+...+..++++|+++++++...++.|++||. .++.+..+..+ +...+..|+++++|+++++...++ .|.+||. ++
T Consensus 161 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g 238 (286)
T 1q7f_A 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG 238 (286)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred CccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CC
Confidence 33456899999999998888788899999998 56666666542 125789999999999888888776 9999995 57
Q ss_pred ceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 334 QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+.+..+..... ...+.+++++|+|.++.++.++.|++|+...
T Consensus 239 ~~~~~~~~~~~-~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 239 QLISALESKVK-HAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEESSC-CSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CEEEEEcccCC-CCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 77766533222 2235889999999984336789999998754
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=1.5e-16 Score=159.00 Aligned_cols=253 Identities=6% Similarity=-0.064 Sum_probs=160.8
Q ss_pred EeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC---
Q 014114 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--- 132 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (430)
.+.| .|||++|+++ ||.|++||+.+++....+..+....+. .....+.+.+ ++..++.++.+
T Consensus 21 ~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sp--------dg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 21 SLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG---HSINDYSISP--------DGQFILLEYNYVKQ 85 (740)
T ss_dssp CEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC---SCCCEEEECT--------TSSEEEEEEEEEEC
T ss_pred ccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhc---ccccceEECC--------CCCEEEEEECCeee
Confidence 3445 7888899887 899999999999987776664421110 0111233433 33366666654
Q ss_pred ------CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCC
Q 014114 133 ------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 133 ------g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 206 (430)
+.+.+|++..... ... ..+...+...+|||+|+.|+.+ .++.|++|++.+++...........
T Consensus 86 ~r~~~~~~~~~~d~~~~~~---------~~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~ 154 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQL---------ITE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED 154 (740)
T ss_dssp SSSCEEEEEEEEETTTTEE---------CCS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT
T ss_pred EEEccceEEEEEECCCCcE---------EEc-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc
Confidence 5566888764321 111 1234678999999999999987 4679999999887754322211110
Q ss_pred CCCcccCc---------ceeEeEEeeCCCCCEEEEEeCCC------------------------------------cEEE
Q 014114 207 SLGIFTPT---------WFTSAAFLSIDDHRKFVAGTNDH------------------------------------QVRL 241 (430)
Q Consensus 207 ~~~~~~~~---------~v~~~~~~~~~~~~~l~~~~~dg------------------------------------~i~~ 241 (430)
.....++. ....+.| +|||+.|+.++.|. .|++
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 00000111 1235788 99999999875322 4788
Q ss_pred EECCC---CCc-ceEEeee------cCCCeEEEEeeCCCCEEEEEcC----CCCEEEEEccCCe----EE--eEE--ecc
Q 014114 242 YDTSA---QRR-PVMSFDF------RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF--IGK 299 (430)
Q Consensus 242 wd~~~---~~~-~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~~----~~--~~~--~~~ 299 (430)
||+.+ +.. ....+.. |...+..++|+|||+.++.... +..|.+||+.+++ +. ..+ ..+
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 99987 631 1233332 6678999999999997665532 3469999999887 22 222 333
Q ss_pred ccCcEE-----EEEEcCCCCEEE-EEeC-C--CeEEEEeCCCCceee
Q 014114 300 CSGSIR-----SIARHPTLPIIA-SCGL-D--SYLRFWDIKTRQLLS 337 (430)
Q Consensus 300 ~~~~v~-----~i~~s~~~~~l~-s~~~-d--~~v~iwd~~~~~~~~ 337 (430)
...|. .+.|+|||+.|+ ..+. + ..|++||+.+++...
T Consensus 313 -~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 313 -TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp -SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred -CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 44443 789999999877 6653 3 468899988776554
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=3.7e-16 Score=156.06 Aligned_cols=325 Identities=9% Similarity=-0.012 Sum_probs=185.1
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcce---EEEEeccCCCCCCceEEEEccC---------CeEEEecc
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSK---CVLAASIDDSQNDPLLAVARKN---------GLTDILNP 82 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~g~~l~~g~~d---------g~i~iwd~ 82 (430)
..++..+ ||.|++||+.++ +....+..|.... ....+.+ +|||++|+.++.+ +.+.+||+
T Consensus 28 g~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 28 HEYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp SEEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CcEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 3445444 899999999886 3344455544321 1112445 8899999998876 56679999
Q ss_pred CCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcce-eeEEeecc
Q 014114 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCA 161 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-i~~~~~~~ 161 (430)
.+++... +.. +...+....|.+.. ..|+.+ .++.|.+|++..........++. -.+++ .+
T Consensus 100 ~~~~~~~-l~~--------~~~~~~~~~~SPdG--------~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~-g~ 160 (740)
T 4a5s_A 100 NKRQLIT-EER--------IPNNTQWVTWSPVG--------HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYN-GI 160 (740)
T ss_dssp TTTEECC-SSC--------CCTTEEEEEECSST--------TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEE-SB
T ss_pred CCCcEEE-ccc--------CCCcceeeEECCCC--------CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceec-Cc
Confidence 8887543 222 12356666665533 366655 57899999876433211001110 00111 01
Q ss_pred C---------CceEEEEEcCCCCEEEEecCCC------------------------------------eEEEEECCC---
Q 014114 162 S---------GTIAFSKVDISEKFSLFGGKGV------------------------------------EVNVWDLDK--- 193 (430)
Q Consensus 162 ~---------~~i~~~~~~~~~~~l~~~~~dg------------------------------------~v~iwd~~~--- 193 (430)
. +....+.|+|+|++|+.++.|. .|++||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 1 2224589999999998864321 477788877
Q ss_pred Cc--eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC----CCcEEEEECCCCC----cc-eEEe--eecCCC
Q 014114 194 CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQR----RP-VMSF--DFRETP 260 (430)
Q Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~----~~-~~~~--~~~~~~ 260 (430)
++ ....+..... ...+...+..++| +||++.++.... +..|.+||+.+++ +. +..+ ..|...
T Consensus 241 ~~~~~~~~l~~~~~---~~~~~~~~~~~~w--spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~ 315 (740)
T 4a5s_A 241 VTNATSIQITAPAS---MLIGDHYLCDVTW--ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW 315 (740)
T ss_dssp SSCCCEEEECCCHH---HHTSCEEEEEEEE--EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred CCcceEEEecCCcc---CCCCCeEEEEEEE--eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence 63 1222221000 0002256889999 789987665533 3479999998866 11 1112 445555
Q ss_pred eE-----EEEeeCCCCEEE-EEc-CCC--CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE-EEeC----CC--e
Q 014114 261 IK-----AVAEEPDSFNIY-IGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCGL----DS--Y 324 (430)
Q Consensus 261 i~-----~~~~s~~~~~l~-~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~----d~--~ 324 (430)
+. .++|+|||+.|+ ..+ .+| .|++||+.+++... +... ...|..+.. ++++.|+ ++.. .+ .
T Consensus 316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGIEA-LTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEEEE-ECSSEEEEEESCGGGCTTCBE
T ss_pred EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEEEE-EeCCEEEEEEecCCCCCceeE
Confidence 44 789999999877 555 344 48888987665543 3332 456666543 3465554 4443 12 4
Q ss_pred EEEEeCCCCceeeEEeeccc---cceeEEEeeecCCcce-e-eecC--CCcEEEecCCC
Q 014114 325 LRFWDIKTRQLLSAVFLKQH---LNEVVFDSAFADKEVA-N-AAAD--APMLEIQNGND 376 (430)
Q Consensus 325 v~iwd~~~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~-~-~~~~--d~~v~vw~~~~ 376 (430)
|+..++..+..... +... .......+.|+|+|.+ + +.+. -..+.+++...
T Consensus 393 ly~v~~~g~~~~~~--lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 393 LYKIQLIDYTKVTC--LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp EEEEETTEEEEEEE--SSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred EEEEECCCCCccee--eccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence 55555554433222 2211 1233588899999997 3 2222 24566666543
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=2.3e-15 Score=135.22 Aligned_cols=208 Identities=10% Similarity=-0.009 Sum_probs=149.3
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEe-CCCcE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT-NDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~-~dg~i 239 (430)
.....++++|+++++++...++.|++||..... .+..+...........+......+++ +| ++.++++.+ .++.|
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeE
Confidence 467899999999988888889999999986542 44444221100000111245788999 78 788888876 68999
Q ss_pred EEEECCCCCcceEEeeecC----------CCeEEEEeeCC-CCEEEEEcCCCCEEEEEccCCeEEeEEecc-ccCcEEEE
Q 014114 240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI 307 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~----------~~i~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~i 307 (430)
++||.. +. .+..+.... .....|+++|+ ++++++...++.|++||..+++.+..+... +...+.++
T Consensus 169 ~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 169 VQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 999954 34 344443222 24789999998 777777778899999999889988887532 25678899
Q ss_pred EEcCCCCEEEEE-------eCCCeEEEEeCCCCceeeEEee-ccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 308 ARHPTLPIIASC-------GLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 308 ~~s~~~~~l~s~-------~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+|+| +..+++. ..+..|++||+.+++.+..+.. .++... +..++++|+|.+ ++...++.|++|+...
T Consensus 247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM-PHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS-EEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC-eeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 9999 4333333 3445899999999998887421 234333 589999999987 8888899999998764
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=6.6e-15 Score=132.25 Aligned_cols=250 Identities=9% Similarity=0.013 Sum_probs=171.0
Q ss_pred EEEeccCCCCCCceEEEEccC------------------------CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEE
Q 014114 54 VLAASIDDSQNDPLLAVARKN------------------------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGL 109 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (430)
+.++++ +|+|+++++...+ +.|.+||..+++.+..+.. ........+
T Consensus 26 v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~~p~gi 96 (329)
T 3fvz_A 26 VSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-------NLFYLPHGL 96 (329)
T ss_dssp EEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-------TTCSSEEEE
T ss_pred ceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-------CccCCceEE
Confidence 344455 5678888887777 4799999988887655432 112345666
Q ss_pred EeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEe--------eccCCceEEEEEcC-CCCEEEEe
Q 014114 110 HLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--------VCASGTIAFSKVDI-SEKFSLFG 180 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~--------~~~~~~i~~~~~~~-~~~~l~~~ 180 (430)
++-+. +..+++...++.|.+|+..... ..+..+. ..+-.....++++| ++.++++.
T Consensus 97 a~d~~--------g~l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 97 SIDTD--------GNYWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp EECTT--------SCEEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred EECCC--------CCEEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 66542 3377778888999999864321 0122111 11223578999999 78888877
Q ss_pred c-CCCeEEEEECCCCceeeeecCCCCCC-CCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCcceEEee--
Q 014114 181 G-KGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFD-- 255 (430)
Q Consensus 181 ~-~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-- 255 (430)
+ .++.|++|+ .++..+..+....... ...........+++ +|+ +.++++...++.|++||..+++. +..+.
T Consensus 162 ~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~--d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~ 237 (329)
T 3fvz_A 162 GYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL--VPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHA 237 (329)
T ss_dssp CSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE--ETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCT
T ss_pred CCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE--ECCCCEEEEEECCCCEEEEEECCCCcE-EEEEecc
Confidence 6 689999999 5677666654221100 00001134788999 787 77777778899999999986553 55553
Q ss_pred ecCCCeEEEEeeC------CCCEEEEEcCCCCEEEEEccCCeEEeEEe---ccccCcEEEEEEcCCCCEEEEEeCCCeEE
Q 014114 256 FRETPIKAVAEEP------DSFNIYIGNGSGDLASVDIRTGKLLGCFI---GKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 256 ~~~~~i~~~~~s~------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~s~~~d~~v~ 326 (430)
.+...+..++|+| +++.+++...+..|++||+.+++.+..+. .+ ...+.+|+++|+|.++++...++.|+
T Consensus 238 ~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3456788999999 33333333345589999999999988874 44 67799999999998888888999999
Q ss_pred EEeCCC
Q 014114 327 FWDIKT 332 (430)
Q Consensus 327 iwd~~~ 332 (430)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=4.7e-15 Score=134.81 Aligned_cols=269 Identities=11% Similarity=0.084 Sum_probs=176.0
Q ss_pred CCCceEEEEc------cCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc------
Q 014114 63 QNDPLLAVAR------KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 63 p~g~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
++++++++.. .|+.|.+||..+++.+..+.... .. .+.+.+..+ .++++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~---------~p-~i~~spdg~--------~lyv~~~~~~~~ 74 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF---------NG-HVQVSNDGK--------KIYTMTTYHERI 74 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE---------EE-EEEECTTSS--------EEEEEEEEETTS
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC---------CC-ceEECCCCC--------EEEEEEeccccc
Confidence 3455666543 47899999999999887765421 12 566655333 666664
Q ss_pred ----cCCeeEEEEeeeecccccCCcceeeEEeec-----cCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCCceeee
Q 014114 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 131 ----~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~ 199 (430)
.++.+.+|++.... .+...... +......++++|++++|+++.. ++.|.+||+.+++.+..
T Consensus 75 ~~g~~~~~v~v~d~~t~~--------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 75 TRGKRSDVVEVWDADKLT--------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp SSSCEEEEEEEEETTTCC--------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred ccCCCCCEEEEEECcCCc--------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 35679999865322 22222221 2345678999999999998864 68999999999988777
Q ss_pred -ecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeCCCcEEEEECCCCCcceEE------eeecCCCeEEEEeeCCCC
Q 014114 200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMS------FDFRETPIKAVAEEPDSF 271 (430)
Q Consensus 200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~------~~~~~~~i~~~~~s~~~~ 271 (430)
+.... ...+.+ .|++ ..+++.+.||.+.+|++....+.... +..+..++ .+.+++++.
T Consensus 147 ~i~~~~-----------~~~v~~--~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 147 VTAAAG-----------CWSVIP--QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp EGGGTT-----------EEEEEE--CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred EecCCC-----------cceeEE--cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 54321 222344 3443 67788889999999998653322211 11122222 334467787
Q ss_pred EEEEEcCCCCEEEEEccCCe--EEeEEecc-----c----cCcEEEEEEcCCCCEEEEEeC-----------CCeEEEEe
Q 014114 272 NIYIGNGSGDLASVDIRTGK--LLGCFIGK-----C----SGSIRSIARHPTLPIIASCGL-----------DSYLRFWD 329 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~--~~~~~~~~-----~----~~~v~~i~~s~~~~~l~s~~~-----------d~~v~iwd 329 (430)
.++..+.++.|.++|+.... .+..+... . ......++|+|++..++.+.. .+.|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 77778888999999986543 22222210 0 011123789999888776643 35899999
Q ss_pred CCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCC
Q 014114 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~ 377 (430)
+.+++.+..+. .+. +.+++|+|||++ ++++. +.|.+||....
T Consensus 293 ~~t~~~v~~i~--~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 293 TKTKQRVARIP--GRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEEEE--CTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCcEEEEEe--cCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99999999854 332 589999999999 55555 99999987764
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=4.2e-15 Score=136.75 Aligned_cols=233 Identities=10% Similarity=0.031 Sum_probs=151.1
Q ss_pred ceEEEEcc-CCe--eEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 014114 124 RTLLTCTT-KGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 124 ~~~~~~~~-~g~--i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 200 (430)
..|+.++. ++. +.+|++.... ...+.. .+...+..+.|+|+++.|+.++.++.|++||+.+++.....
T Consensus 48 ~~l~~~~~~~g~~~l~~~d~~~g~--------~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 48 SKLLFGGAFDGPWNYYLLDLNTQV--------ATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp CEEEEEECTTSSCEEEEEETTTCE--------EEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEEcCCCCceEEEEeCCCCc--------eEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence 35666665 675 5555543221 111211 22333446789999999999999999999999998876555
Q ss_pred cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE----------------------eCCCcEEEEECCCCCcceEEeeecC
Q 014114 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------------------TNDHQVRLYDTSAQRRPVMSFDFRE 258 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----------------------~~dg~i~~wd~~~~~~~~~~~~~~~ 258 (430)
..+. ..+....|..++++.+++.. ..+..|.+||+.+++ ...+..+.
T Consensus 119 ~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~ 187 (388)
T 3pe7_A 119 QVPA---------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQEN 187 (388)
T ss_dssp ECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEES
T ss_pred echh---------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCC
Confidence 4432 33444444447899888743 244689999999865 44555666
Q ss_pred CCeEEEEeeC-CCCEEEEEcCC------CCEEEEEccCCeEEeEEecccc-CcEEEEEEcCCCCEEEEEeC-CC----eE
Q 014114 259 TPIKAVAEEP-DSFNIYIGNGS------GDLASVDIRTGKLLGCFIGKCS-GSIRSIARHPTLPIIASCGL-DS----YL 325 (430)
Q Consensus 259 ~~i~~~~~s~-~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~s~~~-d~----~v 325 (430)
..+..++|+| +|+.|+....+ ..|.++|+..++. ..+..+.. ..+..++|+|||+.|+..+. ++ .|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 7899999999 99988877653 3688888765543 33433312 35888999999997765543 22 39
Q ss_pred EEEeCCCCceeeEEeecccccee--EEEeeecCCcce-eee---------cCCCcEEEecCCCC
Q 014114 326 RFWDIKTRQLLSAVFLKQHLNEV--VFDSAFADKEVA-NAA---------ADAPMLEIQNGNDT 377 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~--i~~~~~s~~g~~-~~~---------~~d~~v~vw~~~~~ 377 (430)
++||+.+++......+.++.... ...++|+|||+. +.. ..+..|.+|+....
T Consensus 267 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 267 YSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99999998754432233311000 122379999998 432 45678999998763
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=5.8e-16 Score=142.85 Aligned_cols=268 Identities=11% Similarity=0.041 Sum_probs=165.0
Q ss_pred CCCCceEEEEccC---CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEE
Q 014114 62 SQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 62 ~p~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~ 138 (430)
+|||++|+..... ..|.+||+.+++......... .......|.+ ++..|+....++.+.+|
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--------~~~~~~~~sp--------dg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--------DNTFGGFIST--------DERAFFYVKNELNLMKV 107 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--------BCTTTCEECT--------TSSEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--------CccccceECC--------CCCEEEEEEcCCcEEEE
Confidence 8899998876443 468888987776543322211 0111123333 33477788888888888
Q ss_pred EeeeecccccCCcceeeEEeeccCCceEE-------------------EEEcCCCCEEEEe-----cCCCeEEEEECCCC
Q 014114 139 SIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGVEVNVWDLDKC 194 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~dg~v~iwd~~~~ 194 (430)
++.... ...+.... ...... +.|+|+++.++.. ..+..|++||+.++
T Consensus 108 d~~~~~--------~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 108 DLETLE--------EQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp ETTTCC--------EEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred ECCCCC--------cEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 865322 11122111 111111 3467777776654 45678999999887
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCC------CcEEEEECCCCCcceEEeeec--CCCeEEEE
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR--ETPIKAVA 265 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~--~~~i~~~~ 265 (430)
+....... ...+..+.| +| ++..|+..+.+ ..|.+||+..+. ...+..+ ...+..++
T Consensus 179 ~~~~~~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 179 ELEVIHQD----------TAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEE
T ss_pred cEEeeccC----------CcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceE
Confidence 76544422 145788889 78 78777766543 368889987643 2333323 23578899
Q ss_pred eeCCCCEEEEEcCC-----CCEEEEEccCCeEEeEEeccccCcEEEEEEcC-CCCEEEEEe----------------CCC
Q 014114 266 EEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCG----------------LDS 323 (430)
Q Consensus 266 ~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~s~~----------------~d~ 323 (430)
|+|+|++|+.++.+ +.|++||+.+++....... . ... +.|+| +|+++++++ .+.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99999988776543 3499999988865433322 1 233 89999 999888765 347
Q ss_pred eEEEEeCCCCceeeEEeeccccce----------eEEEeeecCCcce-ee-ecCCCcEEEecCC
Q 014114 324 YLRFWDIKTRQLLSAVFLKQHLNE----------VVFDSAFADKEVA-NA-AADAPMLEIQNGN 375 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~~~~~~~~~~----------~i~~~~~s~~g~~-~~-~~~d~~v~vw~~~ 375 (430)
.|++||+.+++... +..+... ....++|+|||+. +. ...++...+|..+
T Consensus 321 ~i~~~d~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 321 FLYVLNTKAKSAQK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEEEEETTTTBCCE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cEEEEecccCceEE---ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 89999998877533 2222221 1356799999987 44 4445666666543
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1.9e-14 Score=129.13 Aligned_cols=269 Identities=10% Similarity=-0.019 Sum_probs=179.1
Q ss_pred cCCeEEEeccCCCceeeeeee-cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCc
Q 014114 73 KNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC 151 (430)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~ 151 (430)
.++.|.+||..+++....+.. ... .+-.+....+.+.. . ..+++...++.+.+++.....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~---~~lg~~~~~i~~~~-~--------~lyv~~~~~~~v~viD~~t~~------- 75 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANG---FKLGDVAQSMVIRD-G--------IGWIVVNNSHVIFAIDINTFK------- 75 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHS---SCCBSCEEEEEEET-T--------EEEEEEGGGTEEEEEETTTCC-------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcC---cccCccceEEEEEC-C--------EEEEEEcCCCEEEEEECcccE-------
Confidence 479999999998887654421 000 01112344455422 2 266667778999999876432
Q ss_pred ceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE
Q 014114 152 STVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 152 ~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
.+..+ ........+++++++..+++...++.|.+||+.+++....+....... .......+++ .++..++
T Consensus 76 -~~~~i--~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~----~~~~p~~i~~---~~~~lyv 145 (328)
T 3dsm_A 76 -EVGRI--TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM----ESGSTEQMVQ---YGKYVYV 145 (328)
T ss_dssp -EEEEE--ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT----TTCBCCCEEE---ETTEEEE
T ss_pred -EEEEc--CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccc----cCCCcceEEE---ECCEEEE
Confidence 22222 234678899998888544444488999999999998877665432000 0013455666 2344444
Q ss_pred EEe-CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC----------CCEEEEEccCCeEEeEEeccc
Q 014114 232 AGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 232 ~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~ 300 (430)
+.. .++.|.++|+.+++ .+..+... .....++++|+|++++++..+ +.|.++|..+++....+....
T Consensus 146 ~~~~~~~~v~viD~~t~~-~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 146 NCWSYQNRILKIDTETDK-VVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp EECTTCCEEEEEETTTTE-EEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred EcCCCCCEEEEEECCCCe-EEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 433 48899999999865 35555543 345788999999877776554 789999999999887776431
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecC-Ccce-eee----cCCCcEEEecC
Q 014114 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAA----ADAPMLEIQNG 374 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~-~~~----~~d~~v~vw~~ 374 (430)
......++|+|++++|+++.. .|.+||..+++......+... ......++++| ++.+ ++. ..++.|.+|+.
T Consensus 224 g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 346899999999999888765 899999998876432112211 23358999999 5666 665 57899999998
Q ss_pred C
Q 014114 375 N 375 (430)
Q Consensus 375 ~ 375 (430)
.
T Consensus 301 ~ 301 (328)
T 3dsm_A 301 Q 301 (328)
T ss_dssp T
T ss_pred C
Confidence 7
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=7.4e-14 Score=125.25 Aligned_cols=269 Identities=7% Similarity=-0.033 Sum_probs=174.6
Q ss_pred CCCcEEEEEecCccCCcchhheec----CCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCC
Q 014114 22 SLGLIKVIEARGEDGGVPKVVERW----GDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
.++.|.+||..++ +....+ ...........+.++ ++.+.++...++.|.+||..+++.+..+...
T Consensus 15 ~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~--- 83 (328)
T 3dsm_A 15 SNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGF--- 83 (328)
T ss_dssp CCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---
T ss_pred CCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---
Confidence 4789999999875 322221 011111112223331 2345666677899999999999998887531
Q ss_pred CCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC----CceEEEEEcCC
Q 014114 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVDIS 173 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~----~~i~~~~~~~~ 173 (430)
.....+.+.+. +..+++...++.+.+++..... .+..+..... .....+++ .+
T Consensus 84 ------~~p~~i~~~~~--------g~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~-~~ 140 (328)
T 3dsm_A 84 ------TSPRYIHFLSD--------EKAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ-YG 140 (328)
T ss_dssp ------SSEEEEEEEET--------TEEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE-ET
T ss_pred ------CCCcEEEEeCC--------CeEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE-EC
Confidence 24555665332 1144444478999999875322 2222332210 14556677 34
Q ss_pred CCEEEEec-CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC----------CcEEEE
Q 014114 174 EKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVRLY 242 (430)
Q Consensus 174 ~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------g~i~~w 242 (430)
+.++++.. .++.|.++|+.+++.+..+... .....+.+ +|++++++++..+ +.|.++
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------~~p~~i~~--~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTIG----------IQPTSLVM--DKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEECS----------SCBCCCEE--CTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------CCccceEE--cCCCCEEEEECCCccCCccccCCceEEEE
Confidence 44444433 4889999999999888776542 22456778 7889877776554 789999
Q ss_pred ECCCCCcceEEeeec-CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeE--EeccccCcEEEEEEcC-CCCEEEE
Q 014114 243 DTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPIIAS 318 (430)
Q Consensus 243 d~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~i~~s~-~~~~l~s 318 (430)
|..+++ ....+... ......++|+|++++|+++.. .|.+||+.+++.... +... ......++++| ++.++++
T Consensus 209 d~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 209 DAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp ETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEE
T ss_pred ECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEE
Confidence 998755 34455432 236899999999999988765 899999988775321 2221 35789999999 5566666
Q ss_pred E----eCCCeEEEEeCCCCceeeEEee
Q 014114 319 C----GLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 319 ~----~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
. ..++.|.+||.. ++.+..+..
T Consensus 285 ~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp ECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred cccccccCCEEEEECCC-CCEEEEEEe
Confidence 6 578899999998 999888643
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=2e-14 Score=141.97 Aligned_cols=284 Identities=10% Similarity=-0.008 Sum_probs=167.7
Q ss_pred eEee--cCCCcEEEEEecCccCCcchhheecCCCCcceE---------EEEeccCCCCCCce-EEEEcc-CCeEEEeccC
Q 014114 17 ALTF--DSLGLIKVIEARGEDGGVPKVVERWGDPHSSKC---------VLAASIDDSQNDPL-LAVARK-NGLTDILNPL 83 (430)
Q Consensus 17 l~t~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~p~g~~-l~~g~~-dg~i~iwd~~ 83 (430)
++.. +.++...||....+ .....+..+...+. ...++. +|||++ |+.+.. +..|.+|++.
T Consensus 38 ~~~~~~~~~~~~~l~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--SPDg~~~la~~~~~~~~l~~~~~~ 110 (662)
T 3azo_A 38 WVAPRPAEAGRATLVRRRAD-----GAEESALPAPWNVRNRVFEYSGFPWAGVP--RPAGGPLLVFTHFGDQRLYAFEPD 110 (662)
T ss_dssp EEEEETTTTTEEEEEEECTT-----SCEEESSCTTCCBCCCGGGTCCCCEEEEC--CSSSSCEEEEEBTTTCCEEEECTT
T ss_pred EEecCcccCCcEEEEEECCC-----CCcceeCCCCccccccccccCCccceeee--ecCCCeEEEEEECCCCeEEEEcCC
Confidence 3444 55788999986432 12334444443322 223333 589988 776543 5677777764
Q ss_pred --C-CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC----------CeeEEEEeeeecccccCC
Q 014114 84 --N-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----------GKASMRSIEVTKVSAESS 150 (430)
Q Consensus 84 --~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~i~v~~~~~~~~~~~~~ 150 (430)
. ++ ...+.... ...+...+..+.|.+... .|+.++.+ ..+.+|++...... .
T Consensus 111 ~~g~~~-~~~l~~~~---~~~~~~~~~~~~~spDg~--------~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~ 175 (662)
T 3azo_A 111 APGGAV-PRPLTPVS---AVGGGLRWADPVLLPERG--------EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA---D 175 (662)
T ss_dssp STTCCC-CEECSCCC---CSTTCEEEEEEEEETTTT--------EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT---C
T ss_pred CCCCCC-CEeccCCc---cCCCCccccCcEECCCCC--------EEEEEEecccCCCCCCceeEEEEEECCCCccc---c
Confidence 2 33 23332210 000223556667766433 77777765 46777776541000 0
Q ss_pred cceeeEEeeccCCceEEEEEcCCCCEEEEecCC--------CeEEEEECC-CC---ceeeeecCCCCCCCCcccCcceeE
Q 014114 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLD-KC---EKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~v~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
.+.++.....+...+..++|+|++++|+.++.+ ..|++||+. ++ +.......+. ..+..
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---------~~~~~ 246 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---------EAIAQ 246 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---------BCEEE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---------ceEcc
Confidence 011111110223567788999999999877754 479999998 56 3333322222 45788
Q ss_pred eEEeeCCCCCEEEEEeCCC--cEEEEECCCCCcceEEeeecCCC--------eEEEEeeCCCCEEEEEcCCCCEEEE--E
Q 014114 219 AAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFRETP--------IKAVAEEPDSFNIYIGNGSGDLASV--D 286 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~v~iw--d 286 (430)
+.| +|++++++++..++ .|.+||+.+++ .......+... +..++|+|++++++++.. +.++|| |
T Consensus 247 ~~~--spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 247 AEW--APDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEE--CTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred eEE--CCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 999 89999888888888 56666665543 22222222211 567899999999999998 999999 6
Q ss_pred ccCCeEEeEEeccccCcEEEE-EEcCCCCEEEEEeCCC--eEEEEeCCCCceee
Q 014114 287 IRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGLDS--YLRFWDIKTRQLLS 337 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~i-~~s~~~~~l~s~~~d~--~v~iwd~~~~~~~~ 337 (430)
+.+++ +..+..+ ...+..+ +++.+.-++++++.+. .|++||+.+++...
T Consensus 323 ~~~~~-~~~l~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 323 PESGE-LVDAAGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp TTTTE-EEECCSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred CCCCc-EEEecCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 55555 5667666 6777777 5544433444555554 46666776776543
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=1.1e-14 Score=143.90 Aligned_cols=195 Identities=15% Similarity=0.023 Sum_probs=132.7
Q ss_pred cCCceEEEEEcCCCCEEEEecCC----------CeEEEEECCC------Cceeeeec-CCCCCCCCcccCcceeEeEEee
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKG----------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
+...+..++|+|+++.|++++.+ ..|++||+.+ ++.. .+. .+. ..+..++|
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~---------~~~~~~~~-- 195 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH---------RFVTGPRL-- 195 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS---------SEECCCEE--
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC---------CcccCceE--
Confidence 34567899999999999988876 5899999987 5443 332 221 45777889
Q ss_pred CCCCCEEEEEeCC--------CcEEEEECC-CCC--cceEEeeecCCCeEEEEeeCCCCEEEEEcCCC--CEEEEEccCC
Q 014114 224 IDDHRKFVAGTND--------HQVRLYDTS-AQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTG 290 (430)
Q Consensus 224 ~~~~~~l~~~~~d--------g~i~~wd~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~ 290 (430)
+||+++|+.++.+ ..|++||+. ++. ........|...+..++|+|||++++++..++ .|.+||+.++
T Consensus 196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence 8999999987754 379999998 441 33344445578899999999999888888888 5666666666
Q ss_pred eEEeEEeccccCc--------EEEEEEcCCCCEEEEEeCCCeEEEE--eCCCCceeeEEeeccccceeEEEe-eecCCcc
Q 014114 291 KLLGCFIGKCSGS--------IRSIARHPTLPIIASCGLDSYLRFW--DIKTRQLLSAVFLKQHLNEVVFDS-AFADKEV 359 (430)
Q Consensus 291 ~~~~~~~~~~~~~--------v~~i~~s~~~~~l~s~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~ 359 (430)
+.......+ ... +..++|+|+++++++++. +.++|| |+.+++ +.. +..+.. .+..+ +++++..
T Consensus 276 ~~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~--l~~~~~-~~~~~~s~~~~~~ 349 (662)
T 3azo_A 276 AATQLCRRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD--AAGPWT-EWAATLTVSGTRA 349 (662)
T ss_dssp CEEESSCCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE--CCSSCC-EEEEEEEEETTEE
T ss_pred ceeeccccc-ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE--ecCCCC-eEEEEEecCCCEE
Confidence 654433332 222 567899999999999998 999999 555555 444 444433 34555 4444333
Q ss_pred e-eeecCCCcEEEec
Q 014114 360 A-NAAADAPMLEIQN 373 (430)
Q Consensus 360 ~-~~~~~d~~v~vw~ 373 (430)
+ ++.+.+....+|.
T Consensus 350 ~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 350 VGVAASPRTAYEVVE 364 (662)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEcCCCCCCEEEE
Confidence 3 3444444444443
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.1e-12 Score=114.01 Aligned_cols=276 Identities=7% Similarity=0.012 Sum_probs=179.3
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.. .++|.++++...++.|.+||.. ++.. .+... .....+.++.+-+. +..+++...++
T Consensus 17 ~~~i~~--d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~------~~~~~~~~i~~~~~--------g~l~v~~~~~~ 78 (299)
T 2z2n_A 17 PYGITV--SDKGKVWITQHKANMISCINLD-GKIT-EYPLP------TPDAKVMCLTISSD--------GEVWFTENAAN 78 (299)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-CCEE-EEECS------STTCCEEEEEECTT--------SCEEEEETTTT
T ss_pred ccceEE--CCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC------cccCceeeEEECCC--------CCEEEeCCCCC
Confidence 344444 4667777766668999999986 5433 22211 01235556665432 22556656678
Q ss_pred eeEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
.+..|+.. +.+..+... ....+..+++++++.++++...++.|.+||. +++........ .
T Consensus 79 ~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~--------~ 139 (299)
T 2z2n_A 79 KIGRITKK----------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN--------K 139 (299)
T ss_dssp EEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------T
T ss_pred eEEEECCC----------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------C
Confidence 88888753 123333322 3457889999999988887777889999998 55443221111 0
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
...+..+++ ++++.++++...++.|..||. +++........+...+..++++++++++++...++.|.+||. +++.
T Consensus 140 ~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 140 GSYPSFITL--GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp TCCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCceEEE--cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 145788888 788887777777789999998 544211112333456889999999987777767888999999 6664
Q ss_pred EeE-EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEE
Q 014114 293 LGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 293 ~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~v 371 (430)
... +..+ ...+.+++++++|.++++...++.|.+||. +++ +..+.+..+. ..+.++++ ++|.+..+...+.+..
T Consensus 216 ~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~-~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 216 TEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKS-AEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp EEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSS-CCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred EEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCC-CccceEEe-cCCCEEEEecCCcEEE
Confidence 432 2223 567899999999987777667889999998 454 3333233332 33688999 9999844433566666
Q ss_pred ecCC
Q 014114 372 QNGN 375 (430)
Q Consensus 372 w~~~ 375 (430)
++..
T Consensus 291 ~~~~ 294 (299)
T 2z2n_A 291 LTLI 294 (299)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6544
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=7.5e-13 Score=126.54 Aligned_cols=314 Identities=12% Similarity=0.107 Sum_probs=204.6
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccC--CCceeeeee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~--~~~~~~~~~ 92 (430)
..+++...++.|.++|..++ +++.++...... ..+.+ +|||++|++++.|+.|.+||+. +++.+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g~~p---~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGYAV---HISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-----CEEEEEECSSCE---EEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEEEEEeCCCCc---cceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 45677778899999999986 556565433322 23445 7789999999999999999995 777777665
Q ss_pred ecCCCCCCCCCCceEEEEeec----cCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec--------
Q 014114 93 NAGDSGAQPEDDGIVGLHLFK----RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------- 160 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-------- 160 (430)
.- .....+.+.+ ..+ ..+++...++.+.|+|..... .+....+.
T Consensus 238 ~G---------~~P~~ia~s~~~~pDGk-------~l~v~n~~~~~v~ViD~~t~~--------~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 238 IG---------SEARSIETSKMEGWEDK-------YAIAGAYWPPQYVIMDGETLE--------PKKIQSTRGMTYDEQE 293 (567)
T ss_dssp CC---------SEEEEEEECCSTTCTTT-------EEEEEEEETTEEEEEETTTCC--------EEEEEECCEECTTTCC
T ss_pred cC---------CCCceeEEccccCCCCC-------EEEEEEccCCeEEEEECCCCc--------EEEEEecccccccccc
Confidence 41 1344566652 222 144555567899999854322 22222211
Q ss_pred -c-CCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCcee--eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-
Q 014114 161 -A-SGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT- 234 (430)
Q Consensus 161 -~-~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~- 234 (430)
| ...+..+..++++. +++....+|.|.++|..+...+ ..+... .....+.| +|++++|+++.
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~----------~~~~d~~~--~pdgr~~~va~~ 361 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE----------RFLHDGGL--DGSHRYFITAAN 361 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC----------SSEEEEEE--CTTSCEEEEEEG
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc----------ccccCceE--CCCCCEEEEEeC
Confidence 1 22577788888655 4455567799999999775432 222211 34667788 89999887665
Q ss_pred CCCcEEEEECCCCCcceEEeee-----cCCCeEEEEeeCCCCEE-EEEc-CCCCEEEEEccC-------CeEEeEEeccc
Q 014114 235 NDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNI-YIGN-GSGDLASVDIRT-------GKLLGCFIGKC 300 (430)
Q Consensus 235 ~dg~i~~wd~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l-~~~~-~dg~v~iwd~~~-------~~~~~~~~~~~ 300 (430)
.++.|.++|+.+++ .+..+.. |.+.-..+ ++|++..+ +++. .++.|.++|..+ .+.+.++...
T Consensus 362 ~sn~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~- 438 (567)
T 1qks_A 362 ARNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL- 438 (567)
T ss_dssp GGTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-
T ss_pred CCCeEEEEECCCCc-EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-
Confidence 57899999999865 3444443 32212222 57875444 4443 468999999987 6788888764
Q ss_pred cCcEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCC-----cee-eEEeec-----cccceeEEEeeecCCcce--
Q 014114 301 SGSIRSIARHPTLPIIASCGL-------DSYLRFWDIKTR-----QLL-SAVFLK-----QHLNEVVFDSAFADKEVA-- 360 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~-------d~~v~iwd~~~~-----~~~-~~~~~~-----~~~~~~i~~~~~s~~g~~-- 360 (430)
...-..|..+|++++|.+... .++|.++|+.+. ... ..+... +.....+..+.|+|+|..
T Consensus 439 g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 518 (567)
T 1qks_A 439 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVW 518 (567)
T ss_dssp CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEE
T ss_pred CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEE
Confidence 344455789999999988763 358999999877 211 222110 011234689999999998
Q ss_pred eeec----CCCcEEEecCCCC
Q 014114 361 NAAA----DAPMLEIQNGNDT 377 (430)
Q Consensus 361 ~~~~----~d~~v~vw~~~~~ 377 (430)
++.. .++.|.|+|..+.
T Consensus 519 ~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 519 FSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp EEEECCTTSCCEEEEEETTTT
T ss_pred EEeecCCCCCCcEEEEECCCc
Confidence 3321 4789999987764
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=6.6e-14 Score=125.93 Aligned_cols=259 Identities=9% Similarity=-0.006 Sum_probs=167.3
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|++..++....++.++.| .++....+..+. ..+.++.+.+ .+..++++..++.+.+|+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~--------~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 14 SGKSNSAVPIISESELQTI---TAEPWLEISKKG--------LQLEGLNFDR--------QGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CGGGGCSSCCCCGGGSCEE---ECEEEEEEESSC--------CCEEEEEECT--------TSCEEEEETTTCEEEEECTT
T ss_pred cCCccceeEEeecccCccc---ccceeEEEeccC--------ccccCcEECC--------CCCEEEEECCCCEEEEEeCC
Confidence 5555556666778888899 344444443311 2455566643 22356677888999999864
Q ss_pred eecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCC----CeEEEEECCCCceeeeecCCCCCCCCcccCccee
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
.. .+..+...+...+.+++++++++++++...+ +.|.+||..++.....+.... ....+.
T Consensus 75 ~~---------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~ 138 (333)
T 2dg1_A 75 TK---------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------TAYCID 138 (333)
T ss_dssp TC---------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------SCCCEE
T ss_pred CC---------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------cCCccc
Confidence 32 2233322345779999999999988877666 689999998776543332111 114588
Q ss_pred EeEEeeCCCCCEEEEEeC------CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEE-EcCCCCEEEEEccC-
Q 014114 218 SAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIRT- 289 (430)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~iwd~~~- 289 (430)
.+.+ +|+++++++... .+.|..+|..+++ +..+..+...+..++|+|+++.|++ .+.++.|.+||+.+
T Consensus 139 ~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 139 DMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp EEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ceEE--CCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 8999 889987776653 3566677765433 3333333346789999999986654 45678999999964
Q ss_pred CeEEeEE------eccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccc---eeEEEeeecCCcce
Q 014114 290 GKLLGCF------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN---EVVFDSAFADKEVA 360 (430)
Q Consensus 290 ~~~~~~~------~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~---~~i~~~~~s~~g~~ 360 (430)
+..+..+ .......+..++++++|.++++...++.|.+||. +++.+..+....... ..+.+++|+||+..
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 215 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred CcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 3322111 1100136788999999998888878899999998 577766653332100 13588899999755
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=2.8e-13 Score=118.01 Aligned_cols=239 Identities=8% Similarity=-0.026 Sum_probs=169.0
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
.+++|++++.++.|.+||..+|+.+..+..+.. ..+.++.+.+. +..++ +.++.+..|+.. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~pd--------G~ilv--s~~~~V~~~d~~-G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-------WECNSVAATKA--------GEILF--SYSKGAKMITRD-G 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-------CCCCEEEECTT--------SCEEE--ECBSEEEEECTT-S
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-------CCCcCeEECCC--------CCEEE--eCCCCEEEECCC-C
Confidence 457899999999999999999999998876320 12344444442 22444 346667777642 1
Q ss_pred cccccCCcceeeEEeecc--CCceEEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeE
Q 014114 144 KVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
+ .+|.... ...+.++.+.++++++++.+. ++.|..+|. +++.++.+........ +......+.
T Consensus 66 --------~--~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~---~~~~~~~v~ 131 (276)
T 3no2_A 66 --------R--ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIER---PHAQFRQIN 131 (276)
T ss_dssp --------C--EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSS---GGGSCSCCE
T ss_pred --------C--EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCc---ccccccCce
Confidence 1 2454443 346888999999999998877 788888886 7887777653221100 112344556
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc
Q 014114 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 221 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 300 (430)
+ .++++++++...++.|..||.. ++. +..+..+ ....++.+.++++.+++++.++.|..+|..+++.+.++....
T Consensus 132 ~--~~~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 132 K--NKKGNYLVPLFATSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp E--CTTSCEEEEETTTTEEEEECTT-SCE-EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred E--CCCCCEEEEecCCCEEEEECCC-CCE-EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence 6 7899999999999999999998 664 6777654 355667788999999999888899999999999999987531
Q ss_pred -----cCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeC-CCCceeeEE
Q 014114 301 -----SGSIRSIARHPTLPIIASCGLD--------SYLRFWDI-KTRQLLSAV 339 (430)
Q Consensus 301 -----~~~v~~i~~s~~~~~l~s~~~d--------~~v~iwd~-~~~~~~~~~ 339 (430)
...+..++..++|.++++.... +..+++++ .+++.+..+
T Consensus 207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 1237889999999988887421 23456665 567777764
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=1.9e-13 Score=123.57 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=150.8
Q ss_pred CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC---Ce--eEEEEeeeeccccc
Q 014114 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GK--ASMRSIEVTKVSAE 148 (430)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---g~--i~v~~~~~~~~~~~ 148 (430)
++.|.+||+.+++... + . .+..+.|.+... .++..+.+ +. +.+|++...
T Consensus 42 ~~~l~~~d~~~~~~~~-l-~-----------~~~~~~~SpDg~--------~la~~~~~~~~~~~~l~~~~~~~g----- 95 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I-E-----------NATMPRISPDGK--------KIAFMRANEEKKVSEIWVADLETL----- 95 (347)
T ss_dssp EEEEEEEETTTCCEEE-E-E-----------SCEEEEECTTSS--------EEEEEEEETTTTEEEEEEEETTTT-----
T ss_pred cceEEEEeCCCCceEE-c-c-----------cCCCeEECCCCC--------EEEEEEeccCCCcceEEEEECCCC-----
Confidence 6789999998776433 2 1 345556654333 56555443 44 444444321
Q ss_pred CCcceeeEEeeccCCceEEEEEcCCCCEEEEecC---------------------------CCeEEEEECCCCceeeeec
Q 014114 149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---------------------------GVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 149 ~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------------------dg~v~iwd~~~~~~~~~~~ 201 (430)
....+... .. +..++|+|+++.|+.++. ...|++||+.+++.+..+.
T Consensus 96 ---~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 96 ---SSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp ---EEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred ---ceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 12233332 23 889999999998887763 2579999998887634333
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-------cEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEE
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 274 (430)
.. .+..+.| +|++ +++++..+. ...+|.+.+ .. ...+..+ ..+..+ +|+|++|+
T Consensus 170 ~~-----------~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg~~l~ 230 (347)
T 2gop_A 170 KP-----------RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DSDGERIL 230 (347)
T ss_dssp EE-----------TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EECSSCEE
T ss_pred CC-----------CcccccC--CCCe-EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CCCCCEEE
Confidence 21 2567788 7899 777775542 334444433 32 3444444 455554 99999988
Q ss_pred EEcCC--------CCEEEEEccCCeEEeEEeccccCcEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc
Q 014114 275 IGNGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL 345 (430)
Q Consensus 275 ~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 345 (430)
.++.+ ..|.+|| +++.......+ ...+.. +.|+ ++ ++++++.++.++|| +.+++.... + .+
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~--~-~~- 300 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI--A-KG- 300 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE--E-CS-
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE--e-cC-
Confidence 87754 3577777 55554334444 677886 9999 88 88999999999999 886665332 2 23
Q ss_pred ceeEEEeeecCCcceeeecCCCcE-EEecCC
Q 014114 346 NEVVFDSAFADKEVANAAADAPML-EIQNGN 375 (430)
Q Consensus 346 ~~~i~~~~~s~~g~~~~~~~d~~v-~vw~~~ 375 (430)
...+.+++|+| .-+++++.++.. .+|..+
T Consensus 301 ~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 RHWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred CCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 34568999999 433666665544 666554
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.3e-13 Score=120.12 Aligned_cols=214 Identities=9% Similarity=0.073 Sum_probs=162.7
Q ss_pred CCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccC--CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 014114 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 122 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 199 (430)
.++.+++++.++.+.+|+.+... . +|..... ..+.++.+.|++++++ +.++.|+.||. +++.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~--------~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE--------I--VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE--------E--EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe--------E--EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 45689999999999999864322 2 4665543 3688999999999888 34678999999 8999999
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CCcEEEEECCCCCcceEEeee------cCCCeEEEEeeCCCCE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDF------RETPIKAVAEEPDSFN 272 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~ 272 (430)
+..+.. ..+.++.+ .++++++++.+. ++.|..+|. .++ .+..+.. +......+++.++|++
T Consensus 71 ~~~~~~--------~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~ 138 (276)
T 3no2_A 71 IAAPAG--------CEMQTARI--LPDGNALVAWCGHPSTILEVNM-KGE-VLSKTEFETGIERPHAQFRQINKNKKGNY 138 (276)
T ss_dssp EECCTT--------CEEEEEEE--CTTSCEEEEEESTTEEEEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEECTTSCE
T ss_pred EcCCCC--------ccccccEE--CCCCCEEEEecCCCCEEEEEeC-CCC-EEEEEeccCCCCcccccccCceECCCCCE
Confidence 876421 34677777 789999999887 788888886 344 3544442 1124556678899999
Q ss_pred EEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccc---cceeE
Q 014114 273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH---LNEVV 349 (430)
Q Consensus 273 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~~~~i 349 (430)
+++...++.|..||.. ++.+.++... ..+.++.+.+++.++++++.++.|..+|..+|+.+..+.-... .-..+
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence 9999999999999997 9999998864 4566788899999999999888999999999999998532110 11225
Q ss_pred EEeeecCCcce-eee
Q 014114 350 FDSAFADKEVA-NAA 363 (430)
Q Consensus 350 ~~~~~s~~g~~-~~~ 363 (430)
..+...++|.+ ++.
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 78888999999 444
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=2.8e-13 Score=117.92 Aligned_cols=227 Identities=7% Similarity=-0.091 Sum_probs=155.0
Q ss_pred eEE-EEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 125 TLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 125 ~~~-~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
.++ +...++.+.+|+..... ...+.......+.+++++++++++++.. ++.|.+||....... .+...
T Consensus 37 l~v~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~ 105 (270)
T 1rwi_B 37 VYVTSEGMYGRVVKLATGSTG---------TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD 105 (270)
T ss_dssp EEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC
T ss_pred EEEEccCCCCcEEEecCCCcc---------cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC
Confidence 444 43677888888753211 1111122234678899999988666655 889999998765432 22111
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
. ...+..+++ +++++++++...++.|.+|+..+... ..........+..++++++++++++...++.|.
T Consensus 106 ~--------~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 106 G--------LNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp S--------CSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred C--------cCCCcceEE--CCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 0 145788898 78888777777788999998665332 222222234678899999998777777788999
Q ss_pred EEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-ee
Q 014114 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA 362 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~ 362 (430)
+||............+ ...+.+|+++++|.++++...++.|.+|+......... ...+. ..+.+++++++|.+ ++
T Consensus 175 ~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~~~~~-~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--PFTGL-NTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp EECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--CCCSC-SCEEEEEECTTCCEEEE
T ss_pred EEecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--ccCCC-CCceeEEECCCCCEEEE
Confidence 9999776554333332 36789999999998777777788999999865543321 11222 23589999999998 88
Q ss_pred ecCCCcEEEecCCCC
Q 014114 363 AADAPMLEIQNGNDT 377 (430)
Q Consensus 363 ~~~d~~v~vw~~~~~ 377 (430)
...++.|++|+....
T Consensus 251 ~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEH 265 (270)
T ss_dssp EGGGTEEEEECCCGG
T ss_pred ECCCCEEEEEcCCCc
Confidence 888999999998764
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=2.6e-12 Score=122.85 Aligned_cols=284 Identities=11% Similarity=0.063 Sum_probs=189.2
Q ss_pred CCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
|.+.++++...++.|.++|..+++.+..+... ..+..+.+.+.. .++++++.++.+.+||+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDG--------r~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASG--------RYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTS--------CEEEEEETTSEEEEEETTS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCC--------CEEEEEcCCCeEEEEECCC
Confidence 44556777888999999999999998887652 134456665533 3788888999999999741
Q ss_pred ecccccCCcceeeEEeeccCCceEEEEEc----CCCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCC-CcccC-cc
Q 014114 143 TKVSAESSCSTVKSWNVCASGTIAFSKVD----ISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTP-TW 215 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~-~~ 215 (430)
.. ...+. .+..+.....++|+ |++++++++.. ++.|.++|..+.+.+..+........ ..+++ ..
T Consensus 228 ~t------~~~v~--~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 228 KE------PTTVA--EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp SS------CCEEE--EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred CC------CcEeE--EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence 00 01222 23334567899999 69998887765 58999999999998877654321000 00111 24
Q ss_pred eeEeEEeeCCCCC-EEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEE
Q 014114 216 FTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLL 293 (430)
Q Consensus 216 v~~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~ 293 (430)
+..+.+ ++++. +++.....|.|.++|......+.............+.|+|++++|++++ .++.|.++|+.+++.+
T Consensus 300 va~i~~--s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 300 VAAILA--SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEEEE--CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred eEEEEE--cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 666766 56544 4555567799999999875432222222344677899999999887765 5788999999999987
Q ss_pred eEEec-c---ccCcEEEEEEcCCC-CEEEEEe-CCCeEEEEeCCC-------CceeeEEeeccccceeEEEeeecCCcce
Q 014114 294 GCFIG-K---CSGSIRSIARHPTL-PIIASCG-LDSYLRFWDIKT-------RQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 294 ~~~~~-~---~~~~v~~i~~s~~~-~~l~s~~-~d~~v~iwd~~~-------~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
..+.. . |.+.-..+ ++|++ .+++++. .++.|.++|..+ .+.+..+...+ .. -..+.++|++++
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g-~~~i~~~p~~~~ 453 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GG-SLFIKTHPNSQY 453 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SC-CCCEECCTTCSE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CC-CEEEEeCCCCCe
Confidence 77654 1 12212222 68875 4445554 568999999987 66777754332 22 144678999998
Q ss_pred eeecC--------CCcEEEecCCCC
Q 014114 361 NAAAD--------APMLEIQNGNDT 377 (430)
Q Consensus 361 ~~~~~--------d~~v~vw~~~~~ 377 (430)
+.++. ...|.|+|....
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCcccCceEEEEECCcc
Confidence 33322 459999998765
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1e-12 Score=130.60 Aligned_cols=283 Identities=11% Similarity=0.054 Sum_probs=175.3
Q ss_pred CCCCceEEEEccCC-----eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-CC--
Q 014114 62 SQNDPLLAVARKNG-----LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KG-- 133 (430)
Q Consensus 62 ~p~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g-- 133 (430)
.|+|++++....++ .|.+.+...++....+.. ..... .+...+..+.|.+.. ..++.+.. +|
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~-~~l~~-~~~~~~~~~~~SPDg--------~~la~~~~~~G~~ 149 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDP-NILSD-DGTVALRGYAFSEDG--------EYFAYGLSASGSD 149 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECG-GGGCT-TSCEEEEEEEECTTS--------SEEEEEEEETTCS
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECH-HHhcc-CCCEEEEEEEECCCC--------CEEEEEEcCCCCc
Confidence 36788777654332 344444434443222211 00000 111134555565433 35655543 33
Q ss_pred --eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCe----------------EEEEECCCCc
Q 014114 134 --KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVE----------------VNVWDLDKCE 195 (430)
Q Consensus 134 --~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----------------v~iwd~~~~~ 195 (430)
.|++|++..... +.. ... ...+..++|+|+++.|+.++.++. |++|++.+++
T Consensus 150 ~~~i~v~d~~tg~~--------~~~-~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 150 WVTIKFMKVDGAKE--------LPD-VLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp CEEEEEEETTTTEE--------EEE-EEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred eEEEEEEECCCCCC--------Ccc-ccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 788888764321 111 111 122567999999999998877665 9999998876
Q ss_pred e--eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-----CCcEEEEECCC------CCcceEEeeecCCCeE
Q 014114 196 K--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSA------QRRPVMSFDFRETPIK 262 (430)
Q Consensus 196 ~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~------~~~~~~~~~~~~~~i~ 262 (430)
. ...+.... +...+..+.| +|++++|+..+. +..|++||+.+ +......+..+...+.
T Consensus 220 ~~~~~v~~~~~-------~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (710)
T 2xdw_A 220 SEDILCAEFPD-------EPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY 290 (710)
T ss_dssp GGCEEEECCTT-------CTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred ccceEEeccCC-------CCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE
Confidence 2 12222211 1145678888 899999888764 56899999976 4323556666666665
Q ss_pred EEEeeCCCCEEEEEcCCC----CEEEEEccCCe--EEeEEecccc-CcEEEEEEcCCCCEEEEEeCCCe--EEEEeCCCC
Q 014114 263 AVAEEPDSFNIYIGNGSG----DLASVDIRTGK--LLGCFIGKCS-GSIRSIARHPTLPIIASCGLDSY--LRFWDIKTR 333 (430)
Q Consensus 263 ~~~~s~~~~~l~~~~~dg----~v~iwd~~~~~--~~~~~~~~~~-~~v~~i~~s~~~~~l~s~~~d~~--v~iwd~~~~ 333 (430)
. .|+|+|..|+..+..+ .|.+||+.++. ....+..+.. ..+..++|++++.++++...|+. |++|++.++
T Consensus 291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 5 4889998887766543 59999998764 2344555423 36888999988888888888884 666787778
Q ss_pred ceeeEEeeccccceeEEEeeecCCcce-e-e---ecCCCcEEEecCCCC
Q 014114 334 QLLSAVFLKQHLNEVVFDSAFADKEVA-N-A---AADAPMLEIQNGNDT 377 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~i~~~~~s~~g~~-~-~---~~~d~~v~vw~~~~~ 377 (430)
+.+..+ ..+ ...+..+.++|++.. + + ....+.+..|+....
T Consensus 370 ~~~~~l--~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 370 ALLKIF--PLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp CEEEEE--CCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred CEEEec--CCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 877764 334 344688899999865 3 2 234578999987653
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=1.1e-12 Score=115.80 Aligned_cols=220 Identities=8% Similarity=-0.072 Sum_probs=151.4
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 204 (430)
.++++..++.+..|+... + +..+. .+...+.+++++++++++++...++.|.+||..+++.........
T Consensus 42 l~~~~~~~~~i~~~~~~~---------~-~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDG---------Q-LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEETTS---------C-EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred EEEEeCCCCEEEEEECCC---------C-eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 577888889999998653 1 33444 245678999999999988877777899999998877544332211
Q ss_pred CCCCCcccCcceeEeEEeeCCCCCEEEEE----e-------------CCCcEEEEECCCCCcceEEeeecCCCeEEEEee
Q 014114 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG----T-------------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~-------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
.. ....+..+++ +|+++++++. + ..+.|..++.. ++ +..+..+......++|+
T Consensus 111 ~~-----~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 111 GK-----KLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp TE-----ECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence 10 0134677888 8899988873 2 13456666654 22 44455556678999999
Q ss_pred CCCCEEEEEcCCCCEEEEEcc-CCeE---EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecc
Q 014114 268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~-~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 343 (430)
|+++.+++.+.++.|.+|++. +++. ...+..+ ...+.+++++++|+++++. ++.|.+||.. ++.+..+. .
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~--~ 254 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL--T 254 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE--C
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE--C
Confidence 999988777788999999986 4544 3344223 5667889999999876666 7889999986 77777643 3
Q ss_pred ccceeEEEeee-cCCcce-eeecCCCcEEEecC
Q 014114 344 HLNEVVFDSAF-ADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 344 ~~~~~i~~~~~-s~~g~~-~~~~~d~~v~vw~~ 374 (430)
+.. +.+++| +|++.. ++++.+ .+..++.
T Consensus 255 ~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~ 284 (296)
T 3e5z_A 255 PQT--TSNLCFGGPEGRTLYMTVST-EFWSIET 284 (296)
T ss_dssp SSC--CCEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred CCC--ceeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence 323 588899 588876 444444 3433333
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=6.6e-13 Score=115.49 Aligned_cols=241 Identities=7% Similarity=-0.094 Sum_probs=154.9
Q ss_pred EEEeccCCCCCCceEE-EEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccC
Q 014114 54 VLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
...+.+ .++|.+++ +...++.|.+||..++.... +.. .....+.++.+.+. +..+++.. +
T Consensus 26 p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~-------~~~~~p~~i~~~~~--------g~l~v~~~-~ 86 (270)
T 1rwi_B 26 PSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-------NGLYQPQGLAVDGA--------GTVYVTDF-N 86 (270)
T ss_dssp EEEEEE--CTTCCEEEEECSSSCEEEEECC-----EE-CCC-------CSCCSCCCEEECTT--------CCEEEEET-T
T ss_pred ccceEE--CCCCCEEEEccCCCCcEEEecCCCcccce-Eee-------CCcCCcceeEECCC--------CCEEEEcC-C
Confidence 344555 56777666 44778999999975543221 111 11123334554331 22444444 7
Q ss_pred CeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCccc
Q 014114 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
+.+.+|+.... .+..+.......+..++++++++++++...++.|.+|+..+..........
T Consensus 87 ~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--------- 148 (270)
T 1rwi_B 87 NRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--------- 148 (270)
T ss_dssp TEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS---------
T ss_pred CEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc---------
Confidence 88888875422 112222222356889999999988777777889999986654433221111
Q ss_pred CcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE
Q 014114 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
...+..+++ +++++++++...++.|.+||...... ......+...+..++++++|.++++...++.|.+||......
T Consensus 149 ~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 149 LNDPDGVAV--DNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSCCCEEE--CTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CCCceeEEE--eCCCCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 134677888 78888777777788999999886442 222222336789999999997777777788999999865543
Q ss_pred EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
......+ ...+.+++++++|+++++...++.|+++++...+.
T Consensus 226 ~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 TVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 3222222 35789999999999888888999999999876554
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=3.9e-11 Score=105.82 Aligned_cols=274 Identities=8% Similarity=-0.007 Sum_probs=177.0
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
...+.. .++|.+.++...++.|.+||.. ++... +... .....+.++.+-+. +..+++...++
T Consensus 22 p~~i~~--d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~~--------g~l~v~~~~~~ 83 (300)
T 2qc5_A 22 PYGITS--SEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSSL--------GDIWFTENGAN 83 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECTT--------SCEEEEETTTT
T ss_pred cceeeE--CCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECCC--------CCEEEEecCCC
Confidence 344444 5567777777678999999986 55432 2211 11134555655432 22555555577
Q ss_pred eeEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-ecCCCCCCCCcc
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIF 211 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~ 211 (430)
.+.+++.. +.+..+... ....+.+++++++++++++...++.|..||.. ++.... +...
T Consensus 84 ~v~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------- 144 (300)
T 2qc5_A 84 KIGKLSKK----------GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK-------- 144 (300)
T ss_dssp EEEEECTT----------SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST--------
T ss_pred eEEEECCC----------CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC--------
Confidence 88888754 122223322 23568899999999888877778899999987 554422 2111
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 291 (430)
...+..+++ +++++++++...++.|..||. .++........+...+..+++++++++.++....+.|.+||. +++
T Consensus 145 -~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 145 -GSYPAFITL--GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp -TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred -CCCceeEEE--CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 145788888 788887776666789999998 434212122233456889999999987777666778999998 555
Q ss_pred EEeE-EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEE
Q 014114 292 LLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 292 ~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~ 370 (430)
.... +... ...+.+++++++|.++++...++.|..||. +++.. .+.+.... ..+.+++++++|.+..+... .|.
T Consensus 220 ~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~-~~~~~i~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 220 ISEYDIPTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTEN-AEPHGITFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp EEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTT-CCCCCEEECTTSCEEEECSS-EEE
T ss_pred EEEEECCCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccC-CccceeEeCCCCCEEEEccC-ceE
Confidence 4432 3333 567899999999987777667789999998 45443 33233222 23588899999998444444 666
Q ss_pred EecC
Q 014114 371 IQNG 374 (430)
Q Consensus 371 vw~~ 374 (430)
.++.
T Consensus 295 ~~~p 298 (300)
T 2qc5_A 295 KLNL 298 (300)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 6653
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=4.5e-12 Score=113.87 Aligned_cols=255 Identities=11% Similarity=0.031 Sum_probs=161.0
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++....++.++.|.. .....+..+.... ....+ +|+|++++++..++.|.+||..+++.......
T Consensus 20 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~--- 84 (333)
T 2dg1_A 20 AVPIISESELQTITA--------EPWLEISKKGLQL--EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--- 84 (333)
T ss_dssp SSCCCCGGGSCEEEC--------EEEEEEESSCCCE--EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---
T ss_pred eeEEeecccCccccc--------ceeEEEeccCccc--cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC---
Confidence 344466788888822 2233444443332 33444 57788778888999999999987776543322
Q ss_pred CCCCCCCCceEEEEeeccCccccccCCceEEEEccC----CeeEEEEeeeecccccCCcceeeEEe-eccCCceEEEEEc
Q 014114 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVD 171 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~ 171 (430)
....+.++.+.+.. ..+++...+ +.+.+|+...... ..+.. ......+..++++
T Consensus 85 -----~~~~~~~i~~~~dg--------~l~v~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 85 -----HKANPAAIKIHKDG--------RLFVCYLGDFKSTGGIFAATENGDNL--------QDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp -----SSSSEEEEEECTTS--------CEEEEECTTSSSCCEEEEECTTSCSC--------EEEECSSSSCCCEEEEEEC
T ss_pred -----CCCCcceEEECCCC--------cEEEEeCCCCCCCceEEEEeCCCCEE--------EEEEccCccCCcccceEEC
Confidence 11356777765422 255555555 5788887543211 11111 1234568899999
Q ss_pred CCCCEEEEecC------CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCCCcEEEEEC
Q 014114 172 ISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT 244 (430)
Q Consensus 172 ~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~~wd~ 244 (430)
|+++++++... .+.|..+|..+++....... ...+..++| +|+++.|+. ...++.|.+||+
T Consensus 144 ~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~--~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 144 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----------ISVANGIAL--STDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----------ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEEE
T ss_pred CCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----------CCcccceEE--CCCCCEEEEEeCCCCeEEEEEe
Confidence 99988776653 35677777665544322211 134678888 899886554 456789999999
Q ss_pred CCCCcceEEe--------eecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccC------cEEEEEEc
Q 014114 245 SAQRRPVMSF--------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG------SIRSIARH 310 (430)
Q Consensus 245 ~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~v~~i~~s 310 (430)
......+..+ ..+ ..+..++++++|+++++...++.|.+||. .++.+..+..+ .. .+.+++|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT-TGGGTCSCBCCEEEEC
T ss_pred cCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC-CCccccccCcceEEEC
Confidence 6421112111 111 36788999999988877777889999998 56777676653 22 68999999
Q ss_pred CCCCEEEEEeCC
Q 014114 311 PTLPIIASCGLD 322 (430)
Q Consensus 311 ~~~~~l~s~~~d 322 (430)
|++..|+.++.+
T Consensus 289 ~dg~~L~v~~~~ 300 (333)
T 2dg1_A 289 PGTNQLIICSND 300 (333)
T ss_dssp TTSCEEEEEEEC
T ss_pred CCCCEEEEEeCc
Confidence 998777665554
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=3.2e-12 Score=114.84 Aligned_cols=298 Identities=14% Similarity=0.065 Sum_probs=185.0
Q ss_pred cceEeecC-----CCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEc----------cCCeEEE
Q 014114 15 LRALTFDS-----LGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (430)
Q Consensus 15 ~~l~t~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i 79 (430)
-+++..+. ++.|.+.|..+. +.+.++.....+ . +++ +|||++|+++. .++.|.+
T Consensus 45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~-va~----spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N-PVV----ADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E-EEE----CTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c-EEE----CCCCCEEEEEcccccccccCCCCCEEEE
Confidence 45666654 689999999875 556666543333 2 444 67888888765 3678999
Q ss_pred eccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc--CCeeEEEEeeeecccccCCcceeeEE
Q 014114 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSW 157 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~i~v~~~~~~~~~~~~~~~~i~~~ 157 (430)
||..+++.+..+........ ........+.+.+.. ..++.+.. ++.+.|+|+.... .+..+
T Consensus 114 iD~~t~~v~~~I~v~~g~r~-~~g~~P~~~a~spDG--------k~lyVan~~~~~~VsVID~~t~~--------vv~tI 176 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRF-LVGTYPWMTSLTPDG--------KTLLFYQFSPAPAVGVVDLEGKA--------FKRML 176 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCC-CBSCCGGGEEECTTS--------SEEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred EECCCCeEEEEEECCCcccc-ccCCCCceEEEcCCC--------CEEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence 99999998888764110000 000112224444432 35555542 6789999876443 23333
Q ss_pred eeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-CceeeeecCCCCCCCCcccCcce-eEeEEeeCCCCCEEEEEeC
Q 014114 158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~ 235 (430)
.+ .+. ...+......+++.+.||.+.+.++.+ ++........ +... ...+ ....|. .+++++++ .+.
T Consensus 177 ~v--~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~~-~~~~~~~~~~~-~~dG~~~~-vs~ 245 (386)
T 3sjl_D 177 DV--PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHPE-DEFLINHPAYS-QKAGRLVW-PTY 245 (386)
T ss_dssp EC--CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSCT-TSCBCSCCEEE-TTTTEEEE-EBT
T ss_pred EC--CCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----eccc-cccccccceeE-cCCCcEEE-EeC
Confidence 32 121 112222445666777888888888876 5543222111 0000 0111 223553 46775544 566
Q ss_pred CCcEEEEECCCCCc-ceEEee----------ecCCCeEEEEeeCCCCEEEEEcC----------CCCEEEEEccCCeEEe
Q 014114 236 DHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLG 294 (430)
Q Consensus 236 dg~i~~wd~~~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~ 294 (430)
+|.|++.|+..... ....+. ........++++++++.+++... .+.|.++|+.+++.+.
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 89999999976431 122221 01233445778999988888643 2569999999999999
Q ss_pred EEeccccCcEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCC
Q 014114 295 CFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~s~~~~-~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 357 (430)
.+.. ...+++|++++|++ +|+++. .++.|.++|..+++.+.++...+|... |.+++|
T Consensus 326 ~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~----l~~s~d 384 (386)
T 3sjl_D 326 KFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ----VITTAD 384 (386)
T ss_dssp EEEE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC----EEEECC
T ss_pred EEEC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCce----eEECCc
Confidence 9886 35789999999996 666654 589999999999999999877777444 455555
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=1.5e-12 Score=115.01 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=153.1
Q ss_pred CCCCc-eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEe
Q 014114 62 SQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~ 140 (430)
+|+|+ +++++..++.|.+||..++ ...+... ...+.++.+.+.. ..+++...++.+.+|+.
T Consensus 36 d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~--------~~~~~~l~~~~dg--------~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 36 VPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP--------SHHQNGHCLNKQG--------HLIACSHGLRRLERQRE 97 (296)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS--------CSSEEEEEECTTC--------CEEEEETTTTEEEEECS
T ss_pred eCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC--------CCCcceeeECCCC--------cEEEEecCCCeEEEEcC
Confidence 66777 7888889999999998766 4444331 1346666664422 25555556688999986
Q ss_pred eeecccccCCcceeeEE-ee---ccCCceEEEEEcCCCCEEEE----ec-------------CCCeEEEEECCCCceeee
Q 014114 141 EVTKVSAESSCSTVKSW-NV---CASGTIAFSKVDISEKFSLF----GG-------------KGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~-~~---~~~~~i~~~~~~~~~~~l~~----~~-------------~dg~v~iwd~~~~~~~~~ 199 (430)
... .+..+ .. .....+..++++|+++++++ |+ ..+.|..++.. ++...
T Consensus 98 ~~g---------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~- 166 (296)
T 3e5z_A 98 PGG---------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA- 166 (296)
T ss_dssp TTC---------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-
T ss_pred CCC---------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-
Confidence 322 11111 11 11234667999999998887 33 13467777665 44322
Q ss_pred ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcc---eEEeeecCCCeEEEEeeCCCCEEEEE
Q 014114 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~ 276 (430)
+.... .....++| +|+++.+++.+.++.|.+|++...... ...+..+...+..++++++|+++++.
T Consensus 167 ~~~~~---------~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 167 PIRDR---------VKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp EECCC---------SSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred eecCC---------CCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 22221 44678899 899998877778899999999722222 22233345567789999999866655
Q ss_pred cCCCCEEEEEccCCeEEeEEeccccCcEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
++.|.+||.. ++.+..+..+ .. +.+++| .|+++.|++++.++ +.-++..+.+..+
T Consensus 236 --~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 236 --GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH 291 (296)
T ss_dssp --TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred --CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence 7889999986 7888888876 55 899999 68999888888764 5556666655433
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=8.8e-13 Score=131.09 Aligned_cols=244 Identities=10% Similarity=-0.006 Sum_probs=161.6
Q ss_pred EEEEeccCCCCCCceEEEEccCC-----eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEE
Q 014114 53 CVLAASIDDSQNDPLLAVARKNG-----LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (430)
.+..+++ +|||++||.+..++ .|++||+.+++.+....... .+..+.|.+.. ..|+
T Consensus 126 ~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~---------~~~~~~wspDg--------~~l~ 186 (710)
T 2xdw_A 126 ALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV---------KFSCMAWTHDG--------KGMF 186 (710)
T ss_dssp EEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE---------CSCCEEECTTS--------SEEE
T ss_pred EEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc---------ccceEEEEeCC--------CEEE
Confidence 3556677 89999998866544 89999999988765332211 12335555432 3666
Q ss_pred EEccCCe----------------eEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecC-----CCe
Q 014114 128 TCTTKGK----------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGK-----GVE 185 (430)
Q Consensus 128 ~~~~~g~----------------i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----dg~ 185 (430)
.+..++. +.+|++..... ....++... +...+..+.|+|++++|+.++. +..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 6655544 77887753221 112333322 2445788999999999887654 568
Q ss_pred EEEEECCC------Cc-eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC----CcEEEEECCCCCc-ceEE
Q 014114 186 VNVWDLDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRR-PVMS 253 (430)
Q Consensus 186 v~iwd~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~-~~~~ 253 (430)
|++||+.+ +. ....+..+. ..+.. .| ++++..|+..+.. ..|.+||+.++.. ....
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~---------~~~~~-~~--s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNF---------EGEYD-YV--TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSS---------SSCEE-EE--EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEEEECcccccccCCccceEEeeCCC---------CcEEE-EE--eccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 99999976 42 233443332 22222 35 5678877766653 3699999987542 1344
Q ss_pred eeecCC--CeEEEEeeCCCCEEEEEcCCCC--EEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEE-e---CCCeE
Q 014114 254 FDFRET--PIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-G---LDSYL 325 (430)
Q Consensus 254 ~~~~~~--~i~~~~~s~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~-~---~d~~v 325 (430)
+..|.. .+..++|++++.++++...++. |.+||+.+++.+..+..+ .+.+..+.++|++..++.. + ..+.|
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence 545543 6888999988888888888875 666787778877788776 7889999999998765533 2 34789
Q ss_pred EEEeCCCCc
Q 014114 326 RFWDIKTRQ 334 (430)
Q Consensus 326 ~iwd~~~~~ 334 (430)
++||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998877
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.56 E-value=1.4e-13 Score=126.77 Aligned_cols=191 Identities=8% Similarity=-0.015 Sum_probs=131.3
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeE-------------------eEEeeCCCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS-------------------AAFLSIDDH 227 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~ 227 (430)
.+.|+|++++|+.++.++.|++||+.+++.......+. .+... +.| +|++
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~~~~g~~l~~~~~~~~~~~~~~~~~~--spdg 153 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE---------EWKGYGTWVANSDCTKLVGIEILKRDW--QPLT 153 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGC--CCCC
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---------ccCCCCCEEEeccCCcccccccccccc--CCCC
Confidence 37899999999999988899999999887655444332 11111 234 6777
Q ss_pred CEEEEE-----eCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEEEEEcCC------CCEEEEEccCCeEEeE
Q 014114 228 RKFVAG-----TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGS------GDLASVDIRTGKLLGC 295 (430)
Q Consensus 228 ~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d------g~v~iwd~~~~~~~~~ 295 (430)
+.++.. ..+..|++||+.+++ ...+..+...+..+.|+| ++..|+..+.+ ..|.+||+..++.. .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (396)
T 3c5m_A 154 SWEKFAEFYHTNPTCRLIKVDIETGE--LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-K 230 (396)
T ss_dssp SHHHHHHHHHTCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-E
T ss_pred cceeeeeeccCCCcceEEEEECCCCc--EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-E
Confidence 776654 356789999998865 333445667899999999 78877766543 35888998665433 2
Q ss_pred Eeccc-cCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEEeeccccceeEEEeeecC-Ccce-eeec---
Q 014114 296 FIGKC-SGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAAA--- 364 (430)
Q Consensus 296 ~~~~~-~~~v~~i~~s~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~-~~~~--- 364 (430)
+..+. ...+..++|+|+|++|+.++.+ +.|++||+.+++......+.+ .. +.|+| ||++ ++++
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-----EE-EEEECSSSSEEEEEECCC
T ss_pred eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-----CC-CCccCCCCceEEEecCCc
Confidence 22221 2368889999999988777544 459999999887654322222 12 78999 9998 4432
Q ss_pred -------------CCCcEEEecCCCC
Q 014114 365 -------------DAPMLEIQNGNDT 377 (430)
Q Consensus 365 -------------~d~~v~vw~~~~~ 377 (430)
.+..|.+|+....
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT
T ss_pred ceeeccccccccCCCCcEEEEecccC
Confidence 3478999987653
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=7.2e-11 Score=107.33 Aligned_cols=270 Identities=10% Similarity=-0.076 Sum_probs=172.4
Q ss_pred CCCCceEEEEcc--CC---eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc------
Q 014114 62 SQNDPLLAVARK--NG---LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 62 ~p~g~~l~~g~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
.|+++++++... .. .|.+||..+++.+..+..- ..+ .+.+.+..+ .++.+.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spDg~--------~lyv~n~~~~~~ 90 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--------FLP--NPVAAHSGS--------EFALASTSFSRI 90 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--------CCC--CeEECCCCC--------EEEEEecccccc
Confidence 467777777653 22 8999999999887666531 112 455554333 555553
Q ss_pred ----cCCeeEEEEeeeecccccCCcceeeEEeec------cCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCCceee
Q 014114 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (430)
Q Consensus 131 ----~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~ 198 (430)
.++.+.+++..... .+....+. +......+.|+|++++|+++.. ++.|.++| .+++.+.
T Consensus 91 ~rg~~~~~v~viD~~t~~--------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 91 AKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred ccCCCCCeEEEEECCCCc--------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36778899875322 11212111 1123458899999999998864 57899999 9998877
Q ss_pred e-ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEee-----ecCCCe-EEEEeeCCCC
Q 014114 199 T-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPI-KAVAEEPDSF 271 (430)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~~i-~~~~~s~~~~ 271 (430)
. +.... ++.+. ......+++.+.||.+.++|. +++. ..... ....++ ....+.+++.
T Consensus 162 ~~i~~~~-------------~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 162 QLLSSPT-------------CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEcCCCc-------------eEEEE-eCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCC
Confidence 6 54321 12332 223345667778999999999 6553 32211 111222 2345666665
Q ss_pred EEEEEcCCCCEEEEEccCCe--EEeEEecc---------ccCcEEEEEEcCCCCEEEEEeC----------CCeEEEEeC
Q 014114 272 NIYIGNGSGDLASVDIRTGK--LLGCFIGK---------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDI 330 (430)
Q Consensus 272 ~l~~~~~dg~v~iwd~~~~~--~~~~~~~~---------~~~~v~~i~~s~~~~~l~s~~~----------d~~v~iwd~ 330 (430)
.++..+..+.+.+.|+.... .+..+... .......+.++|+++.++.+.. ++.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 55555578899999997542 22332210 0223445789999988777653 357999999
Q ss_pred CCCceeeEEeeccccceeEEEeeecCCcc-e-eeec-CCCcEEEecCCCCC
Q 014114 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAA-DAPMLEIQNGNDTQ 378 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~-~~~~-~d~~v~vw~~~~~~ 378 (430)
.+++.+..+.+.+ ....++|+|||+ + +++. .++.|.++|.....
T Consensus 306 ~t~~vv~~i~~g~----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 306 LVGQTSSQISLGH----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEEECCC----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999874433 258889999999 5 5555 58999999987644
No 196
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.54 E-value=4.9e-12 Score=124.13 Aligned_cols=317 Identities=11% Similarity=0.066 Sum_probs=192.5
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcc---------eEEEEeccCCCCCCceEEEEccCCeEEEeccCC
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSS---------KCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..+++.++.++.|.-+|..++ +.+=++...... ........ ++..|++++.|+.|..+|..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~t 147 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAAT 147 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTT-----EEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTT
T ss_pred CCEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCC
Confidence 357888888899999998876 333222221100 00000111 235688999999999999999
Q ss_pred Cceeeeeeec-CCCC-CCCCCCceEEEEeeccCccccccCCceEEEEcc------CCeeEEEEeeeeccc----ccCCc-
Q 014114 85 GDLRVAISNA-GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVS----AESSC- 151 (430)
Q Consensus 85 ~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~v~~~~~~~~~----~~~~~- 151 (430)
|+.+..+... .... ......++. .++.++.++. +|.+..+|....... ....+
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~~p~v--------------~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~ 213 (677)
T 1kb0_A 148 GKEVWHQNTFEGQKGSLTITGAPRV--------------FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP 213 (677)
T ss_dssp CCEEEEEETTTTCCSSCBCCSCCEE--------------ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred CCEEeeecCCcCcCcCcccccCcEE--------------ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence 9999888763 1100 000011111 1124444443 567777776543211 00000
Q ss_pred ----------ceeeEEe-------e-ccCCceEEEEEcCCCCEEEEecCCC-------------------eEEEEECCCC
Q 014114 152 ----------STVKSWN-------V-CASGTIAFSKVDISEKFSLFGGKGV-------------------EVNVWDLDKC 194 (430)
Q Consensus 152 ----------~~i~~~~-------~-~~~~~i~~~~~~~~~~~l~~~~~dg-------------------~v~iwd~~~~ 194 (430)
.....|. . ........++++|++..++.+..++ .|..+|..++
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG 293 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG 293 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred cccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence 0000111 0 1111223578888888888887664 5999999999
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCCCC---CEEEEEeCCCcEEEEECCCCCcceEEeeecC-----------CC
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-----------TP 260 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----------~~ 260 (430)
+.++.++.................+.. ..++ ..++.++.+|.|+++|..+++. +..+.... .+
T Consensus 294 ~~~W~~~~~~~d~wd~~~~~~p~l~~~--~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~~~~~~d~~g~~ 370 (677)
T 1kb0_A 294 KYKWHYQETPGDNWDYTSTQPMILADI--KIAGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNFVPVNWASGYDKHGKP 370 (677)
T ss_dssp CEEEEEESSTTCCSCCCCCSCCEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSEEEECTTSCE
T ss_pred CEEEEEecCCCcccccccCCCcEEEec--ccCCcEeeEEEEECCCCEEEEEECCCCCE-eccccccccCcccccCCCCce
Confidence 999987753322111110111222222 2366 6789999999999999999774 44443211 01
Q ss_pred e------------------------EEEEeeCCCCEEEEEcCC-------------------------------------
Q 014114 261 I------------------------KAVAEEPDSFNIYIGNGS------------------------------------- 279 (430)
Q Consensus 261 i------------------------~~~~~s~~~~~l~~~~~d------------------------------------- 279 (430)
+ ..++|+|+..++++...+
T Consensus 371 ~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 450 (677)
T 1kb0_A 371 IGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP 450 (677)
T ss_dssp EECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred eeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccccc
Confidence 1 156889988888875431
Q ss_pred ------CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEee
Q 014114 280 ------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 280 ------g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 353 (430)
+.|..||+.+++.+..+.. ..++....+...+.+++.++.||.+++||.++++.+..+.+... ....-+.
T Consensus 451 ~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~--~~~~p~~ 526 (677)
T 1kb0_A 451 PKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG--VVAAPST 526 (677)
T ss_dssp CCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEE
T ss_pred CCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC--cccCCEE
Confidence 6799999999999888764 34455556667788888999999999999999999999755432 1223456
Q ss_pred ecCCcce
Q 014114 354 FADKEVA 360 (430)
Q Consensus 354 ~s~~g~~ 360 (430)
|..+|+.
T Consensus 527 y~~~G~~ 533 (677)
T 1kb0_A 527 YMVDGRQ 533 (677)
T ss_dssp EEETTEE
T ss_pred EEeCCEE
Confidence 7788876
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=5.8e-11 Score=104.63 Aligned_cols=224 Identities=5% Similarity=-0.042 Sum_probs=155.8
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEee-ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 203 (430)
.+++...++.+.+|+.. . .+..+.. .....+.++++++++.++++...++.|..||.. ++. ..+...
T Consensus 28 l~v~~~~~~~v~~~d~~-~---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~ 95 (299)
T 2z2n_A 28 VWITQHKANMISCINLD-G---------KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP 95 (299)
T ss_dssp EEEEETTTTEEEEECTT-C---------CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred EEEEecCCCcEEEEcCC-C---------CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence 55555557888888754 1 2222221 134678899999999988877778899999986 332 222211
Q ss_pred CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
. ....+..+++ ++++.++++...++.|.+||. +++........+...+..++++++++++++...++.|.
T Consensus 96 ~-------~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 96 N-------PDSAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp S-------TTCCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred C-------cCCCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 0 0145788888 788888887777889999998 44422222223345789999999998877777778999
Q ss_pred EEEccCCeEEeE-EeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-e
Q 014114 284 SVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N 361 (430)
Q Consensus 284 iwd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~ 361 (430)
.||. +++.... +... ...+.++++++++.++++...++.|.+||. +++... +.+... ...+.+++++++|.+ +
T Consensus 166 ~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~-~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTP-NARPHAITAGAGIDLWF 240 (299)
T ss_dssp EECT-TCCEEEEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSST-TCCEEEEEECSTTCEEE
T ss_pred EEcC-CCcEEEeeCCCC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCC-CCCceeEEECCCCCEEE
Confidence 9999 6665432 2233 457889999999997777767889999998 666433 323333 233689999999998 6
Q ss_pred eecCCCcEEEecCC
Q 014114 362 AAADAPMLEIQNGN 375 (430)
Q Consensus 362 ~~~~d~~v~vw~~~ 375 (430)
+...++.|.+|+..
T Consensus 241 ~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 241 TEWGANKIGRLTSN 254 (299)
T ss_dssp EETTTTEEEEEETT
T ss_pred eccCCceEEEECCC
Confidence 66577899999873
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=1.5e-12 Score=129.11 Aligned_cols=280 Identities=8% Similarity=-0.052 Sum_probs=168.4
Q ss_pred CCCCceEEEEccCC---eEEEe--ccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEE-----Ecc
Q 014114 62 SQNDPLLAVARKNG---LTDIL--NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-----CTT 131 (430)
Q Consensus 62 ~p~g~~l~~g~~dg---~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~ 131 (430)
.|+|++++....++ .-.|| +...++....+.. .... ..+...+..+.+.+.. ..++. ++.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~-~~~a-~~~~~~~~~~~~SPDG--------~~la~~~~~~G~~ 145 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDP-NGWS-KDGTVSLGTWAVSWDG--------KKVAFAQKPNAAD 145 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECG-GGSS-SSSCEEEEEEEECTTS--------SEEEEEEEETTCS
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEch-HHhc-cCCCEEEEEEEECCCC--------CEEEEEECCCCCc
Confidence 46788887766544 33444 4334433222221 0000 0111235555565433 25552 233
Q ss_pred CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCe-------------EEEEECCCCc---
Q 014114 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVE-------------VNVWDLDKCE--- 195 (430)
Q Consensus 132 ~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-------------v~iwd~~~~~--- 195 (430)
+..|++|++....... .. .. .......++|+|+++.|+.++.+.. |++|++.++.
T Consensus 146 ~~~i~v~dl~tg~~~~---~~-----~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 216 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSK---VD-----VI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD 216 (695)
T ss_dssp CCEEEEEETTTCCBCS---SC-----CB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC
T ss_pred eEEEEEEECCCCCCcC---Cc-----cc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc
Confidence 4578899886543210 00 00 0111257899999999998887765 9999998876
Q ss_pred -eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC----cEEEEECCCCCcceEEeeecCCCeEEEEeeCCC
Q 014114 196 -KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 270 (430)
.+.....+ ...+..+.| +|++++|+.++.++ .|.+|+..++. ...+..+...+....+ +++
T Consensus 217 ~lv~~~~~~---------~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g 282 (695)
T 2bkl_A 217 TVVHERTGD---------PTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKD 282 (695)
T ss_dssp EEEECCCCC---------TTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETT
T ss_pred eEEEecCCC---------CEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCC
Confidence 23222222 145778888 89999998877666 67777665433 4556666666667666 566
Q ss_pred CEEEEEc---CCCCEEEEEccCCeE--EeEEeccc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeEEeecc
Q 014114 271 FNIYIGN---GSGDLASVDIRTGKL--LGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQ 343 (430)
Q Consensus 271 ~~l~~~~---~dg~v~iwd~~~~~~--~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~ 343 (430)
.+++.+. .++.|.+||+.+++. ...+..++ ...+..++|+ ++.++++...|+..+||.+. +++.+..+ ..
T Consensus 283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~ 359 (695)
T 2bkl_A 283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTV--QL 359 (695)
T ss_dssp EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEEC--CC
T ss_pred cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe--cC
Confidence 6444443 257899999987653 23343332 4568888998 67788888999988888654 45555553 32
Q ss_pred ccceeEEEeeecCCcce-e----eecCCCcEEEecCCCC
Q 014114 344 HLNEVVFDSAFADKEVA-N----AAADAPMLEIQNGNDT 377 (430)
Q Consensus 344 ~~~~~i~~~~~s~~g~~-~----~~~~d~~v~vw~~~~~ 377 (430)
+....+..++++|++.. + +....+.|.+|+....
T Consensus 360 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 360 PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 32334678899999876 3 2334578999997653
No 199
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.54 E-value=4.9e-12 Score=124.42 Aligned_cols=319 Identities=10% Similarity=0.078 Sum_probs=188.5
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcce-----E--EEEeccCCCCCCceEEEEccCCeEEEeccCCCc
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSK-----C--VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
..+++.++.++.|..+|..++ +.+-++....... + .+.-.. ..++..|++++.|+.|..+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG-----RLIWKYDPQSDRHRAGEACCDAVNRGV--AVWKGKVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCC--EEETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCC-----ceeEEEcCCCCccccccccccCCCCcc--EEECCEEEEEccCCEEEEEECCCCC
Confidence 467888888999999999876 3333332211100 0 000000 1123468899999999999999999
Q ss_pred eeeeeeec-CCCC-CCCCCCceEEEEeeccCccccccCCceEEEEc------cCCeeEEEEeeeeccc------ccCCc-
Q 014114 87 LRVAISNA-GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------TKGKASMRSIEVTKVS------AESSC- 151 (430)
Q Consensus 87 ~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~g~i~v~~~~~~~~~------~~~~~- 151 (430)
.+..+... .... ......++. . ++.++.+. .+|.+..+|....... .....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v----~----------~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~ 208 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRV----V----------NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKL 208 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEE----E----------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred EeeeecCcCCCCCCccccCCcEE----E----------CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccc
Confidence 99887653 1100 000111211 0 12344433 2466666665433210 00000
Q ss_pred ----cee---------eEEee--ccCCceEEEEEcCCCCEEEEecCCCe-------------------EEEEECCCCcee
Q 014114 152 ----STV---------KSWNV--CASGTIAFSKVDISEKFSLFGGKGVE-------------------VNVWDLDKCEKI 197 (430)
Q Consensus 152 ----~~i---------~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~-------------------v~iwd~~~~~~~ 197 (430)
..+ ..|.. ........++++|+..+++++..++. |..+|..+|+.+
T Consensus 209 ~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~ 288 (689)
T 1yiq_A 209 PPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV 288 (689)
T ss_dssp CCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee
Confidence 000 00100 11111235788888889998887764 999999999999
Q ss_pred eeecCCCCCCCCcccCcceeEeEEeeCCCCC---EEEEEeCCCcEEEEECCCCCcceEEeeecC-C--------------
Q 014114 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-T-------------- 259 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~-------------- 259 (430)
+.++..............+..... ..++. .++.++.+|.++++|..+++. +....... .
T Consensus 289 W~~~~~~~d~wd~~~~~~~~l~d~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~~~~~~~pi~ 365 (689)
T 1yiq_A 289 WHYQTTPGDAWDYTATQHMILAEL--PIDGKPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSWTKGMDMKTGRPIL 365 (689)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSEEEEETTTTEEEE
T ss_pred EeeecCCcccccccCCCCcEEEee--ccCCcEEEEEEEECCCCeEEEEECCCCCE-eccccccccccccccCccCCCccc
Confidence 988653221111101111111122 12454 788899999999999999774 32221100 0
Q ss_pred ------------------------CeEEEEeeCCCCEEEEEcC-------------------------------------
Q 014114 260 ------------------------PIKAVAEEPDSFNIYIGNG------------------------------------- 278 (430)
Q Consensus 260 ------------------------~i~~~~~s~~~~~l~~~~~------------------------------------- 278 (430)
.-..++|+|+..++++...
T Consensus 366 ~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 445 (689)
T 1yiq_A 366 DEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEG 445 (689)
T ss_dssp CHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHH
T ss_pred chhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCccccc
Confidence 0112688888888877532
Q ss_pred --------CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEE
Q 014114 279 --------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 279 --------dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~ 350 (430)
+|.|..||+.+++.+..+..+ .++..-.+...+.+++.++.|+.|+.||.++|+.+..+.+.... ...
T Consensus 446 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~--~~~ 521 (689)
T 1yiq_A 446 LLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV--MAA 521 (689)
T ss_dssp HHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC--CSC
T ss_pred CCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc--ccC
Confidence 377999999999999888764 33344456667789999999999999999999999986554321 123
Q ss_pred EeeecCCcce
Q 014114 351 DSAFADKEVA 360 (430)
Q Consensus 351 ~~~~s~~g~~ 360 (430)
-+.|..+|+.
T Consensus 522 p~ty~~~G~q 531 (689)
T 1yiq_A 522 PVTYSVDGEQ 531 (689)
T ss_dssp CEEEEETTEE
T ss_pred ceEEEECCEE
Confidence 4577788886
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=2.4e-11 Score=109.10 Aligned_cols=272 Identities=13% Similarity=0.058 Sum_probs=179.5
Q ss_pred CCCCceEEEEcc-----CCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc------
Q 014114 62 SQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 62 ~p~g~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
.|+++.+++... ++.|.++|..+++.+..+..-. .+ .+.+.+..+ .++.+.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~--------~P--~va~spDG~--------~lyVan~~~~r~ 102 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--------LP--NPVVADDGS--------FIAHASTVFSRI 102 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--------SC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC--------CC--cEEECCCCC--------EEEEEccccccc
Confidence 788888888765 6899999999999998887511 12 255554333 554443
Q ss_pred ----cCCeeEEEEeeeecccccCCcceeeEEeecc------CCceEEEEEcCCCCEEEEecC--CCeEEEEECCCCceee
Q 014114 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (430)
Q Consensus 131 ----~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~ 198 (430)
.++.+.+||..... .+....+.. +.....+.|+|++++++++.. ++.|.++|+.+++.+.
T Consensus 103 ~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 35678888875433 233333221 224567899999999998763 6899999999999998
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec----CCCeE-EEEee-CCCCE
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIK-AVAEE-PDSFN 272 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~~i~-~~~~s-~~~~~ 272 (430)
++.... . ...+ +.....+++.+.||.+.+.++....+.......+ ..++. ...|. ++|++
T Consensus 175 tI~v~g-----------~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 175 MLDVPD-----------C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp EEECCS-----------E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEECCC-----------c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 886431 1 1223 3345667778889999999887622222211111 12222 24554 67765
Q ss_pred EEEEcCCCCEEEEEccCCe--EEeEEe---------ccccCcEEEEEEcCCCCEEEEEeC----------CCeEEEEeCC
Q 014114 273 IYIGNGSGDLASVDIRTGK--LLGCFI---------GKCSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK 331 (430)
Q Consensus 273 l~~~~~dg~v~iwd~~~~~--~~~~~~---------~~~~~~v~~i~~s~~~~~l~s~~~----------d~~v~iwd~~ 331 (430)
++ .+.+|.|.+.|+.+.. .+..+. +-.......++++++++.++.... .+.|.++|+.
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~ 319 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 319 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence 55 4568999999997553 343332 101223345778999988877653 2579999999
Q ss_pred CCceeeEEeeccccceeEEEeeecCCcc-e-ee-ecCCCcEEEecCCCCC
Q 014114 332 TRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NA-AADAPMLEIQNGNDTQ 378 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~-~~-~~~d~~v~vw~~~~~~ 378 (430)
+++.+..+.+.. .++.++|++|++ + ++ ...++.|.++|.....
T Consensus 320 t~kv~~~i~vg~----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 320 TGERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TCCEEEEEEEEE----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCeEEEEEECCC----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 999999975543 358899999997 4 33 4568999999987644
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=2.4e-10 Score=103.90 Aligned_cols=282 Identities=10% Similarity=-0.032 Sum_probs=173.5
Q ss_pred cceEeecC--CC---cEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEc----------cCCeEEE
Q 014114 15 LRALTFDS--LG---LIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (430)
Q Consensus 15 ~~l~t~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i 79 (430)
-+++..+. .+ .|.++|..++ +++.++..... . .+.+ +|||++|+++. .++.|.+
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~---p-~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFL---P-NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCC---C-CeEE--CCCCCEEEEEeccccccccCCCCCeEEE
Confidence 44555553 33 7899999875 45555543222 1 4445 78899998875 3678999
Q ss_pred eccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc--CCeeEEEEeeeecccccCCcceeeE-
Q 014114 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKS- 156 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~i~v~~~~~~~~~~~~~~~~i~~- 156 (430)
||..+.+.+..+.......+. .......+.+.+.. ..++.+.. ++.+.++| .... .+..
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG--------~~l~v~n~~~~~~v~viD-~t~~--------~~~~~ 163 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNN--------ADLLFFQFAAGPAVGLVV-QGGS--------SDDQL 163 (373)
T ss_pred EECCCCcEEEEEECCCccccc-cCCCccceEECCCC--------CEEEEEecCCCCeEEEEE-CCCC--------EEeEE
Confidence 999888887776541000000 00122345555433 36666653 57788888 5432 1222
Q ss_pred EeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcc-eeEeEEeeCCCCCEEEEEe
Q 014114 157 WNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW-FTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~ 234 (430)
.. ..+. +.+.|.+ ..+++.+.||.+.++|. +++.+......... . .... .....| .+++..++..+
T Consensus 164 i~--~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~---~-~~~p~~~~~~~--~~~~~~~~~~~ 231 (373)
T 2mad_H 164 LS--SPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML---T-AAQNLLTQPAQ--ANKSGRIVWPV 231 (373)
T ss_pred cC--CCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc---c-CCcceeeccee--EecCCEEEEEc
Confidence 22 1222 3444544 45566778999999999 87766432210000 0 0011 122344 34444444445
Q ss_pred CCCcEEEEECCCCCc-ceEEeee----------cCCCeEEEEeeCCCCEEEEEcC----------CCCEEEEEccCCeEE
Q 014114 235 NDHQVRLYDTSAQRR-PVMSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL 293 (430)
Q Consensus 235 ~dg~i~~wd~~~~~~-~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~ 293 (430)
..+.+.+.|+..... .+..+.. .......++++|+++.++++.. .+.|.++|+.+++.+
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 788999999975431 1222211 1123445788999988887653 357999999999999
Q ss_pred eEEeccccCcEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeEE
Q 014114 294 GCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~s~~~~-~l~s~~-~d~~v~iwd~~~~~~~~~~ 339 (430)
..+.. .....+++|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 312 ~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 312 SQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99875 45689999999999 777777 5899999999999998873
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=5.2e-11 Score=105.88 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=148.3
Q ss_pred EccCCeeEEEEeeeecccccCCcceeeEEee----ccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeee-ecC
Q 014114 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWT-AKP 202 (430)
Q Consensus 129 ~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~ 202 (430)
...++.+.+|+.... .+..+.. .+...+.+++++++ ++++++.. .+.|.+||.. ++.... ...
T Consensus 42 ~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~ 110 (314)
T 1pjx_A 42 GKPAGEILRIDLKTG---------KKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD 110 (314)
T ss_dssp TEECCEEEEECTTTC---------CEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC
T ss_pred CCCCCEEEEEeCCCC---------cEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc
Confidence 466788888875321 2222221 12356889999998 66555444 4479999998 665433 221
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC---------------CcEEEEECCCCCcceEEeeecCCCeEEEEee
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
... .....+.++++ +++++++++...+ +.|..||.. ++ ...+..+......++|+
T Consensus 111 ~~~-----~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 111 SEG-----RRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVR 180 (314)
T ss_dssp TTS-----CBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEE
T ss_pred CCC-----ccccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEe
Confidence 110 01144788898 7888877776554 567777765 33 23333333456889999
Q ss_pred ----CCCCEEEEE-cCCCCEEEEEcc-CCeE-----EeEEecccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 268 ----PDSFNIYIG-NGSGDLASVDIR-TGKL-----LGCFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 268 ----~~~~~l~~~-~~dg~v~iwd~~-~~~~-----~~~~~~~~~-~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
|+++.|+++ ..++.|.+||+. +++. ...+..+ . ..+..++++++|.++++...++.|.+||..+++.
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE
Confidence 999766554 567889999986 4542 2233332 2 5688999999999888887889999999987877
Q ss_pred eeEEeeccccceeEEEeeecCCcc-e-eeecCCCcEEEecCCC
Q 014114 336 LSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~s~~g~-~-~~~~~d~~v~vw~~~~ 376 (430)
+..+.. +. ..+.+++|+|+|. + ++...++.|..|+...
T Consensus 260 ~~~~~~--~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 260 KMRIRC--PF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SEEEEC--SS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEEEeC--CC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 766432 32 3368999999998 5 5666678999998754
No 203
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.50 E-value=2e-10 Score=104.99 Aligned_cols=307 Identities=11% Similarity=0.083 Sum_probs=189.3
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCC---------CcceEEEEeccCCCCCCceEEEEccCCeEEEeccCC
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDP---------HSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..++++++.+|.|..+|..++ +.+-.+... .... ...... ++..|++++.++.|..+|..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG-----KEIWSVSLAEKDGWFSKEPALL-SGGVTV----SGGHVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC-----CEEEEEECCC---CCSCCCCCE-EEEEEE----ETTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEcCCCeEEEEEccCC-----ceeeeecCccccccccccCccc-ccCceE----eCCEEEEEcCCCEEEEEECCC
Confidence 467899999999999999875 333222211 1111 111111 234688899999999999999
Q ss_pred CceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCc
Q 014114 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~ 164 (430)
|+.+.......... ..++ . .++.++.++.++.+..++..... .+|.......
T Consensus 123 G~~~W~~~~~~~~~----~~p~----~----------~~~~v~v~~~~g~l~~~d~~tG~----------~~W~~~~~~~ 174 (376)
T 3q7m_A 123 GTVAWQTKVAGEAL----SRPV----V----------SDGLVLIHTSNGQLQALNEADGA----------VKWTVNLDMP 174 (376)
T ss_dssp CCEEEEEECSSCCC----SCCE----E----------ETTEEEEECTTSEEEEEETTTCC----------EEEEEECCC-
T ss_pred CCEEEEEeCCCceE----cCCE----E----------ECCEEEEEcCCCeEEEEECCCCc----------EEEEEeCCCC
Confidence 99887776522110 0111 1 12378888888888888864322 2344433222
Q ss_pred eE------EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCC-CcccCcce-eEeEEeeCCCCCEEEEEeCC
Q 014114 165 IA------FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWF-TSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 165 i~------~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~~~~~~l~~~~~d 236 (430)
+. .... .+..+++++.++.|..+|..+++.++.......... .+.....+ ..... .+..+++++.+
T Consensus 175 ~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~v~~~~~~ 248 (376)
T 3q7m_A 175 SLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV----VNGVVFALAYN 248 (376)
T ss_dssp ----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE----ETTEEEEECTT
T ss_pred ceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE----ECCEEEEEecC
Confidence 21 1111 245778888899999999999999988764321100 00000001 11112 34677788889
Q ss_pred CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 237 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
+.+..+|..+++. +.... ......+... +..|++++.++.|..+|..+++.+..........+..... .+..|
T Consensus 249 g~l~~~d~~tG~~-~w~~~--~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l 321 (376)
T 3q7m_A 249 GNLTALDLRSGQI-MWKRE--LGSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNL 321 (376)
T ss_dssp SCEEEEETTTCCE-EEEEC--CCCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEE
T ss_pred cEEEEEECCCCcE-Eeecc--CCCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEE
Confidence 9999999998764 44333 2334555443 5578888889999999999999887776321222333333 34678
Q ss_pred EEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecC
Q 014114 317 ASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 317 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~ 374 (430)
+.++.+|.|+++|..+++.+....+.+ ... .......++.++.++.+|.|..|+.
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~~~~~~~--~~~-~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVAQQKVDS--SGF-QTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCT--TCB-CSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCC--Ccc-eeCCEEECCEEEEEeCCCEEEEEeC
Confidence 888999999999999999988754421 111 1111223666788888999998863
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=1.8e-12 Score=128.52 Aligned_cols=243 Identities=9% Similarity=-0.077 Sum_probs=152.8
Q ss_pred EEEEeccCCCCCCceEEE-----EccCCeEEEeccCCCcee-ee-eeecCCCCCCCCCCceEEEEeeccCccccccCCce
Q 014114 53 CVLAASIDDSQNDPLLAV-----ARKNGLTDILNPLNGDLR-VA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~-----g~~dg~i~iwd~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
.+..+++ +|||++||. |+.+..|++||+.+++.+ .. +... ....+.|.+.. ..
T Consensus 122 ~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~~wspDg--------~~ 181 (695)
T 2bkl_A 122 SLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG----------KYATPKWTPDS--------KG 181 (695)
T ss_dssp EEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC----------TTCCCEECTTS--------SE
T ss_pred EEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc----------cccceEEecCC--------CE
Confidence 4556667 899999984 445578999999988865 21 1110 11234454432 36
Q ss_pred EEEEccCCe-------------eEEEEeeeecccccCCcceeeEEee-ccCCceEEEEEcCCCCEEEEecCCC----eEE
Q 014114 126 LLTCTTKGK-------------ASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGV----EVN 187 (430)
Q Consensus 126 ~~~~~~~g~-------------i~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg----~v~ 187 (430)
|+.++.+.. +++|++..... ....++.. .+...+..+.|+|++++|+.++.++ .|+
T Consensus 182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred EEEEEecCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 666666554 88888754321 11223332 2235688999999999998877665 688
Q ss_pred EEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe---CCCcEEEEECCCCCc-ceEEeeec--CCCe
Q 014114 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR-PVMSFDFR--ETPI 261 (430)
Q Consensus 188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~-~~~~~~~~--~~~i 261 (430)
+|+..+++... +..+. ..+....+ +++.+++.+. .++.|.+||+.++.. ....+..+ ...+
T Consensus 256 ~~~~~~~~~~~-l~~~~---------~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 256 WKRPGEKDFRL-LVKGV---------GAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EECTTCSSCEE-EEECS---------SCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred EEcCCCCceEE-eecCC---------CceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 88766554332 22221 22334444 3555444443 257899999987542 12333333 4468
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccccCcEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCce
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG----LDSYLRFWDIKTRQL 335 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~----~d~~v~iwd~~~~~~ 335 (430)
..++|+ ++.++++...|+..+||.+. +++....+..+..+.+..+.++|++..++... ..++|++||+.+++.
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888998 67788888889988887654 45556666544356788899999997766332 347899999988764
No 205
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.50 E-value=4.7e-12 Score=114.41 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=126.1
Q ss_pred CceEEEEEcCCCCEEEEecCC---C--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-
Q 014114 163 GTIAFSKVDISEKFSLFGGKG---V--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND- 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d- 236 (430)
..+..++|+|++++|+..+.+ + .|.+|++.+++........ . +..+.| +|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----------~-~~~~~w--spdg~~l~~~~~~~ 125 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----------N-IRSLEW--NEDSRKLLIVGFKR 125 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----------E-EEEEEE--CTTSSEEEEEEECC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----------C-ccceeE--CCCCCEEEEEEccC
Confidence 357789999999999877653 2 4888899887765443321 3 788899 8999988887632
Q ss_pred --------------------------CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCC-------CEE
Q 014114 237 --------------------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-------DLA 283 (430)
Q Consensus 237 --------------------------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------~v~ 283 (430)
..|++||+.+++. +..+.. . .+..++|+|+| +++++..+. ...
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~ 201 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWD 201 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEEeccccccccccccc
Confidence 5799999987552 244444 3 78899999999 777776542 345
Q ss_pred EEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeeEEeeccccceeEEE-eee
Q 014114 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD--------SYLRFWDIKTRQLLSAVFLKQHLNEVVFD-SAF 354 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~i~~-~~~ 354 (430)
||.+.+++. ..+..+ ..+..+ +|+|++|+.++.+ ..|++|| +++.... ...+ ...+.. +.|
T Consensus 202 l~~~d~~~~-~~l~~~--~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l--~~~~-~~~~~~~~~~ 271 (347)
T 2gop_A 202 IYIWEDGKE-EKMFEK--VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI--LDEV-DRGVGQAKIK 271 (347)
T ss_dssp EEEEETTEE-EEEEEE--ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES--STTC-CSEEEEEEEE
T ss_pred EEEeCCCce-EEeccC--cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec--cccC-CcccCCccEE
Confidence 555445544 333332 344444 9999988877744 3688888 5554332 3333 334565 899
Q ss_pred cCCcce-eeecCCCcEEEecCC
Q 014114 355 ADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 355 s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+ || + ++++.++.+++| .+
T Consensus 272 s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 272 D-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp T-TE-EEEEEEETTEEEEE-EE
T ss_pred c-Cc-EEEEEecCCcEEEE-Ec
Confidence 9 88 7 888899999999 76
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=4.2e-11 Score=106.44 Aligned_cols=235 Identities=9% Similarity=0.007 Sum_probs=150.1
Q ss_pred CCCCceEEE-------EccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCe
Q 014114 62 SQNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK 134 (430)
Q Consensus 62 ~p~g~~l~~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 134 (430)
.++|.++++ +..++.|.+||..+++....... ...+....+.++.+.+.. +.++.+...+.
T Consensus 26 ~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~~~--------g~l~v~~~~~~ 93 (314)
T 1pjx_A 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDRDA--------NQLFVADMRLG 93 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECSSS--------SEEEEEETTTE
T ss_pred CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEecCC--------CcEEEEECCCC
Confidence 356776666 57789999999877775432210 000011345566654321 24555554556
Q ss_pred eEEEEeeeecccccCCcceeeEE--ee---ccCCceEEEEEcCCCCEEEEecCC---------------CeEEEEECCCC
Q 014114 135 ASMRSIEVTKVSAESSCSTVKSW--NV---CASGTIAFSKVDISEKFSLFGGKG---------------VEVNVWDLDKC 194 (430)
Q Consensus 135 i~v~~~~~~~~~~~~~~~~i~~~--~~---~~~~~i~~~~~~~~~~~l~~~~~d---------------g~v~iwd~~~~ 194 (430)
+.+|+.. .. +..+ .. .....+.+++++++++++++...+ +.|..|+.. +
T Consensus 94 l~~~d~~-g~---------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 94 LLVVQTD-GT---------FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEEEETT-SC---------EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EEEEeCC-CC---------EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 7777754 21 1111 10 112347899999999888776554 578888765 5
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeC----CCCCEEEEE-eCCCcEEEEECC-CCCc----ceEEeeecC-CCeEE
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI----DDHRKFVAG-TNDHQVRLYDTS-AQRR----PVMSFDFRE-TPIKA 263 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~~~-~~dg~i~~wd~~-~~~~----~~~~~~~~~-~~i~~ 263 (430)
+....... ......+++ + ++++.|+++ ..++.|.+||+. .+.. ....+..+. ..+..
T Consensus 163 ~~~~~~~~----------~~~~~~i~~--~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 163 QMIQVDTA----------FQFPNGIAV--RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp CEEEEEEE----------ESSEEEEEE--EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CEEEeccC----------CCCcceEEE--ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 44322211 123567788 7 888665554 567899999976 3221 122223333 56788
Q ss_pred EEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC
Q 014114 264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKT 332 (430)
Q Consensus 264 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~~d~~v~iwd~~~ 332 (430)
++++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|+++.|+ +...++.|..|++..
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999988887777889999999877777777665 57899999999999554 445668899999864
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=6.6e-10 Score=97.84 Aligned_cols=266 Identities=8% Similarity=0.026 Sum_probs=163.4
Q ss_pred cceEeec-CCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeee
Q 014114 15 LRALTFD-SLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+++.++ .++.|.+|+... +.. .+...........+.. .++|.++++...++.|..||.. ++.. .+..
T Consensus 31 g~l~v~~~~~~~v~~~~~~~------~~~-~~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~ 99 (300)
T 2qc5_A 31 GKVWFTQHKANKISSLDQSG------RIK-EFEVPTPDAKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFT-EYPL 99 (300)
T ss_dssp SCEEEEETTTTEEEEECTTS------CEE-EEECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEE-EEEC
T ss_pred CCEEEEcCCCCeEEEECCCC------ceE-EEECCCCCCcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeE-EecC
Confidence 4455554 467788887762 211 1211111122445555 4677777777668899999986 6543 2222
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDI 172 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~ 172 (430)
. .....+.++.+-+. +..+++...++.+..++.. +.+..+... ....+..+++++
T Consensus 100 ~------~~~~~~~~i~~~~~--------g~l~v~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~ 155 (300)
T 2qc5_A 100 P------QPDSGPYGITEGLN--------GDIWFTQLNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGS 155 (300)
T ss_dssp S------STTCCEEEEEECST--------TCEEEEETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECT
T ss_pred C------CCCCCCccceECCC--------CCEEEEccCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECC
Confidence 1 01134555665432 2255665557778777643 122223222 345688999999
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 252 (430)
+++++++...++.|..||. +++... +.... ....+..+++ +++++++++....+.|.+||. .+.....
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~-------~~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEE-YPLPT-------NAAAPVGITS--GNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEE-EECSS-------TTCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEE-eeCCC-------CCCCcceEEE--CCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 9997776666789999998 555433 22111 0145778888 788877777666778999998 3332122
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE-eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
.+..+...+.+++++++|++.++...++.|..||. +++.. ..+... ...+.+++++++|.++++.. . .|..+|..
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 22334567899999999987776666789999998 45433 223322 45688999999998666554 4 67777653
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=2.2e-11 Score=121.62 Aligned_cols=197 Identities=10% Similarity=-0.011 Sum_probs=130.8
Q ss_pred EEEEEcCCCCEEEEecCCCe--------------EEEEECCCCce--eeeecCCCCCCCCcccCcceeEeEEeeCCCCCE
Q 014114 166 AFSKVDISEKFSLFGGKGVE--------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg~--------------v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (430)
..++|+|+ +.|+.+..++. |++|++.++.. ...+.... ++..+..+.| +|++++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~ 281 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASV--SSDGRW 281 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEE--CCCCCE
Confidence 56889999 88887776543 89999987652 22222211 1134778888 899998
Q ss_pred EEEEeCCC-----cEEEEECCCCCcc-eEEeeecCCCeEEEEeeCCCCEEEEEcCC----CCEEEEEccCC-eEEeEEec
Q 014114 230 FVAGTNDH-----QVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG-KLLGCFIG 298 (430)
Q Consensus 230 l~~~~~dg-----~i~~wd~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~iwd~~~~-~~~~~~~~ 298 (430)
|+..+.++ .|++||+.++... ...+..+...+.... +|+|+.|+..+.+ +.|.+||+.++ .....+..
T Consensus 282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 88877544 8999999875222 445555555555553 4889888887764 44999999874 23333334
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeEEeeccccceeEEEeeecCCcce-e----eecCCCcEEEe
Q 014114 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----AAADAPMLEIQ 372 (430)
Q Consensus 299 ~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~----~~~~d~~v~vw 372 (430)
++...+..+.|+ ++.++++...|+..+||.+. +++.+..+ ..+....+..+.++|++.. + +....+.|.+|
T Consensus 361 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 437 (741)
T 1yr2_A 361 ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAV--SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLAL 437 (741)
T ss_dssp CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEEC--BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeec--cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence 335667788887 56678888889987777554 45555553 2222344688899999875 3 23345789999
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
|...
T Consensus 438 d~~t 441 (741)
T 1yr2_A 438 DPAT 441 (741)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8765
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=2.6e-11 Score=121.09 Aligned_cols=243 Identities=12% Similarity=0.004 Sum_probs=150.1
Q ss_pred EEEEeccCCCCCCceEEEEccC-----CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEE
Q 014114 53 CVLAASIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL 127 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 127 (430)
.+..+++ +|||++||.+..+ ..|++||+.+++.+..... . ..+..+.|.+. . .|+
T Consensus 164 ~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-~--------~~~~~~~wspD-~--------~l~ 223 (741)
T 1yr2_A 164 ALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-W--------VKFSGLAWLGN-D--------ALL 223 (741)
T ss_dssp EEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-E--------EESCCCEESTT-S--------EEE
T ss_pred EEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-C--------ceeccEEEECC-C--------EEE
Confidence 3556667 8999999886654 4699999999887543211 0 00112334332 2 444
Q ss_pred EEccCC--------------eeEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecCC-----CeEE
Q 014114 128 TCTTKG--------------KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKG-----VEVN 187 (430)
Q Consensus 128 ~~~~~g--------------~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d-----g~v~ 187 (430)
.+..++ .+.+|++..... ....++... +...+..+.|+|++++|+..+.+ ..|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCch------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 444333 366666543221 112333322 22357899999999998877654 3899
Q ss_pred EEECCCC--ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC----CcEEEEECCCCC-cceEEeeecCCC
Q 014114 188 VWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQR-RPVMSFDFRETP 260 (430)
Q Consensus 188 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~-~~~~~~~~~~~~ 260 (430)
+||+.++ +....+..+. ..+... + .|+++.|+..+.+ +.|.+||+.++. .....+..+...
T Consensus 298 ~~d~~~~~~~~~~~l~~~~---------~~~~~~-~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDL---------KAQWDF-V--DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp EEEEETTEECCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred EEECCCCCCcccEEecCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 9999876 3133333322 112222 2 3678888777653 459999998742 323344444556
Q ss_pred eEEEEeeCCCCEEEEEcCCCCEEEEEcc-CCeEEeEEeccccCcEEEEEEcCCCCEEE-EEe---CCCeEEEEeCCCCc
Q 014114 261 IKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCG---LDSYLRFWDIKTRQ 334 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~-s~~---~d~~v~iwd~~~~~ 334 (430)
+..++++ ++.++++...|+..+||.+. +++....+..+..+.+..+.++|++..|+ +.+ ..++|++||+.+++
T Consensus 366 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 366 LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7778887 56677888888887777554 45666666543367789999999987555 222 34789999998876
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=1.1e-10 Score=106.72 Aligned_cols=284 Identities=13% Similarity=0.058 Sum_probs=173.7
Q ss_pred cceEeecC-C----CcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEc----------cCCeEEE
Q 014114 15 LRALTFDS-L----GLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (430)
Q Consensus 15 ~~l~t~~~-d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i 79 (430)
-+++.... + +.|.+.|..+. +++.++.....+ .+.+ +|||++|+++. .++.|.+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~-----~vv~~I~vG~~P----gia~--SpDgk~lyVan~~~~~~~~G~~~~~Vsv 153 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTG-----RILGMTDGGFLP----HPVA--AEDGSFFAQASTVFERIARGKRTDYVEV 153 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTT-----EEEEEEEECSSC----EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCC-----EEEEEEECCCCC----ceEE--CCCCCEEEEEeccccccccCCCCCEEEE
Confidence 34555444 2 79999999886 556555433332 3444 67888888876 4678999
Q ss_pred eccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc--CCeeEEEEeeeecccccCCcceeeEE
Q 014114 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSW 157 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~i~v~~~~~~~~~~~~~~~~i~~~ 157 (430)
+|..+++.+..+..-....+. .......+.+.+ ++..++.+.. ++.+.+.|+.... .+..+
T Consensus 154 iD~~t~~vv~~I~v~g~~r~~-~g~~P~~~~~sp--------DGk~lyV~n~~~~~~VsVID~~t~k--------vv~~I 216 (426)
T 3c75_H 154 FDPVTFLPIADIELPDAPRFL-VGTYQWMNALTP--------DNKNLLFYQFSPAPAVGVVDLEGKT--------FDRML 216 (426)
T ss_dssp ECTTTCCEEEEEEETTCCCCC-BSCCGGGSEECT--------TSSEEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred EECCCCcEEEEEECCCccccc-cCCCcceEEEcC--------CCCEEEEEecCCCCeEEEEECCCCe--------EEEEE
Confidence 999999988887641000000 000111233333 2235655543 5778888876433 22223
Q ss_pred eeccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC
Q 014114 158 NVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (430)
.+ .+. ....|+ ...+++.+.||.+.+.++.+++...... ..+..........+.| .+++..++..+..
T Consensus 217 ~v--~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~~~p~~~~~~~--~~dg~~~~~~s~~ 285 (426)
T 3c75_H 217 DV--PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----EVFHTEDELLINHPAF--SLRSGRLVWPTYT 285 (426)
T ss_dssp EC--CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----CCCSCTTSCBCSCCEE--CTTTCEEEEEBTT
T ss_pred Ec--CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----eeeccCCCceeeEeee--cCCCCEEEEEeCC
Confidence 32 121 222332 2455556667777777775555442211 0000000011123456 6788887777888
Q ss_pred CcEEEEECCCCCcce-EEeee----------cCCCeEEEEeeCCCCEEEEEcC----------CCCEEEEEccCCeEEeE
Q 014114 237 HQVRLYDTSAQRRPV-MSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGC 295 (430)
Q Consensus 237 g~i~~wd~~~~~~~~-~~~~~----------~~~~i~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~ 295 (430)
+.|.+.|+......+ ..+.. .......++++|+++.+++... ++.|.++|+.+.+.+..
T Consensus 286 g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~ 365 (426)
T 3c75_H 286 GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK 365 (426)
T ss_dssp SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE
Confidence 999999987533111 11110 0112233689999988777642 35799999999999999
Q ss_pred EeccccCcEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeEE
Q 014114 296 FIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 296 ~~~~~~~~v~~i~~s~~~~-~l~s~~-~d~~v~iwd~~~~~~~~~~ 339 (430)
+.. .....+|+|+||++ +++++. .++.|.++|+.+++.+..+
T Consensus 366 I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 366 IEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 976 34689999999998 888888 5899999999999999885
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=3.1e-10 Score=100.04 Aligned_cols=216 Identities=13% Similarity=0.070 Sum_probs=142.2
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 204 (430)
.+++...++.|..|+.... .+..+. ....+.+++++++++++++ . ++.|.+||..+++.........
T Consensus 27 l~~~d~~~~~i~~~d~~~~---------~~~~~~--~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTK---------QVQRVT--MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp EEEEETTTTEEEEEETTTC---------CEEEEE--CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT
T ss_pred EEEEECCCCEEEEEECCCC---------cEEEEe--CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC
Confidence 5666677888888886532 233443 3467899999999996554 3 5679999998876543332211
Q ss_pred CCCCCcccCcceeEeEEeeCCCCCEEEEEeCC---------CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEE-
Q 014114 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY- 274 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~- 274 (430)
.. ....++.+++ +|+++++++.... ..-.+|.+..... ...+..+......++|+|+++.|+
T Consensus 94 ~~-----~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 94 DK-----KNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp TC-----SSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEE
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEE
Confidence 11 0145788888 8899866654321 2234444433222 223333334568899999998765
Q ss_pred EEcCCCCEEEEEc--cCCeE-----EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccce
Q 014114 275 IGNGSGDLASVDI--RTGKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 275 ~~~~dg~v~iwd~--~~~~~-----~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
+.+.++.|.+|++ .++.. ...+..+ ...+..++++++|++.++...++.|.+||..+++.+..+.++. .
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~---~ 241 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV---D 241 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS---S
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC---C
Confidence 4556788999987 45543 2223333 4678899999999888887788899999999899988854432 2
Q ss_pred eEEEeeec-CCcce--eeecC
Q 014114 348 VVFDSAFA-DKEVA--NAAAD 365 (430)
Q Consensus 348 ~i~~~~~s-~~g~~--~~~~~ 365 (430)
.+++++|. |++.. ++...
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEBC
T ss_pred CceEEEEeCCCCCEEEEEcCC
Confidence 36899998 78765 44443
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=4.8e-12 Score=114.12 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=131.0
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeee-ecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
.+..+++++...++++|+.++ +.+|++........ -............+. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence 588899999999999999884 66698764331000 000000000111235 999999 78899998 88999999
Q ss_pred ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC
Q 014114 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d 322 (430)
|+++... ......|..++.++.+.+. .++++..||.|.+||+.++.... + ...|++++|||+| ++.|..|
T Consensus 112 dv~sl~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEETT
T ss_pred Echhhhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEEcC
Confidence 9988653 5566677788888877654 38888999999999999877653 2 5689999999999 7788999
Q ss_pred CeEEEEeCCCCce--eeEEee----c---cccceeEEEeeecCCcce
Q 014114 323 SYLRFWDIKTRQL--LSAVFL----K---QHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 323 ~~v~iwd~~~~~~--~~~~~~----~---~~~~~~i~~~~~s~~g~~ 360 (430)
|.+++|+...++. ..++.. . +| ...+.++.|.+++.+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDF 227 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeE
Confidence 9999999877765 445421 1 13 345799999999988
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=1.6e-11 Score=110.73 Aligned_cols=179 Identities=10% Similarity=0.072 Sum_probs=125.9
Q ss_pred ceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccccc---CCcceeeEEeeccCCceEEEEEcCCCCEEEEec
Q 014114 105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~ 181 (430)
++..+.+.+... .+++++.+ .+.+|++........ ...+.. +...... |..++| ++++|+++
T Consensus 39 ~~nlLais~~~g--------ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~--~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS--------LFVAASGS-KAVVGELQLLRDHITSDSTPLTFK--WEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT--------EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCS--EEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC--------EEEEeCCC-EEEEEEhhHhhhhhccccccccce--EEeeCCC-eeEEEE--CCCEEEEE-
Confidence 344566655444 77777776 555698754332110 001121 2333456 999999 88999998
Q ss_pred CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCe
Q 014114 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 182 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i 261 (430)
.++.|++||+.+.........+. ..+.++.+. .| .+++++.||.|.+||+..+.. .. +...|
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~---------~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~V 165 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKNV-NN---TLVILNSVNDLSALDLRTKST-KQ----LAQNV 165 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCE-EE----EEESE
T ss_pred cCCcEEEEEchhhhccCccceee---------cceeeEEec-CC---CEEEEECCCCEEEEEccCCcc-cc----ccCCc
Confidence 88999999998765444443332 336677764 22 388889999999999987553 22 33589
Q ss_pred EEEEeeCCCCEEEEEcCCCCEEEEEccCCeE--EeEE------e---ccccCcEEEEEEcCCCCEEEEE
Q 014114 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~------~---~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
+|++|+|+| ++.|..||.+++|+...++. ..++ . +| ...|.+|.|.+++.++++-
T Consensus 166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEE
Confidence 999999999 67899999999999988775 5566 2 24 7889999999999988764
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=1.3e-10 Score=106.34 Aligned_cols=273 Identities=10% Similarity=0.003 Sum_probs=177.1
Q ss_pred CCCCceEEEEccC-----CeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc------
Q 014114 62 SQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 62 ~p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
.|+++++++.... +.|.++|..+++.+..+..-. .+ .+.+.+..+ .++.+.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--------~P--gia~SpDgk--------~lyVan~~~~~~ 142 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--------LP--HPVAAEDGS--------FFAQASTVFERI 142 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--------SC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--------CC--ceEECCCCC--------EEEEEecccccc
Confidence 4666767665442 699999999999998887611 13 566655333 555544
Q ss_pred ----cCCeeEEEEeeeecccccCCcceeeEEeec------cCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCCceee
Q 014114 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (430)
Q Consensus 131 ----~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~ 198 (430)
.++.+.++|..... .+....+. .......+.|+|++++++++.. ++.|.+.|+.+++.+.
T Consensus 143 ~~G~~~~~VsviD~~t~~--------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 143 ARGKRTDYVEVFDPVTFL--------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccCCCCCEEEEEECCCCc--------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence 36678888865432 22222221 1233457899999999998764 5789999999999988
Q ss_pred eecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEE----eeecCCCe-EEEEeeCCCCEE
Q 014114 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPI-KAVAEEPDSFNI 273 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~~~i-~~~~~s~~~~~l 273 (430)
.+.... . .... +.....+++.+.||.+.+.++..++. ... +.....++ ..+.|.+++..+
T Consensus 215 ~I~v~g-----------~--~~~~-p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 215 MLDVPD-----------C--YHIF-PASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp EEECCS-----------E--EEEE-EEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred EEEcCC-----------c--eeec-cCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 876531 1 1111 11235566677788888888854332 211 11111221 235678898888
Q ss_pred EEEcCCCCEEEEEccCCeEE--eEEec---------cccCcEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCC
Q 014114 274 YIGNGSGDLASVDIRTGKLL--GCFIG---------KCSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIKT 332 (430)
Q Consensus 274 ~~~~~dg~v~iwd~~~~~~~--~~~~~---------~~~~~v~~i~~s~~~~~l~s~~~----------d~~v~iwd~~~ 332 (430)
+..+..+.|.+.|+...... ..+.- ........++++|+++.++.... ++.|.++|+.+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 77778899999998654321 11110 00112223689999887766642 35799999999
Q ss_pred CceeeEEeeccccceeEEEeeecCCcc-e-eeec-CCCcEEEecCCCCCC
Q 014114 333 RQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAA-DAPMLEIQNGNDTQE 379 (430)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~~~~~s~~g~-~-~~~~-~d~~v~vw~~~~~~~ 379 (430)
++.+..+.+... .+.++|+|||+ + ++.. .++.|.|+|......
T Consensus 360 ~kvv~~I~vg~~----P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 360 GERINKIELGHE----IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CCEEEEEEEEEE----ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CeEEEEEECCCC----cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 999999755432 58889999999 6 5555 589999999887543
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=7.5e-10 Score=102.03 Aligned_cols=227 Identities=9% Similarity=-0.083 Sum_probs=146.5
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeecC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~ 202 (430)
.+++...++.|++|++.. +.+..+... ..... ++|+++++.|+++..++ .|.+|+...+.....+..
T Consensus 144 lyv~d~~~~~I~~id~~~---------g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDD---------NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp EEEEETTTTEEEEEETTT---------TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred EEEEecCCCcEEEEECCC---------CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence 556666678888887642 233333222 22334 89999999998888765 799999876554333310
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEe-----eecCCCe--EEEEeeCC-CCEEE
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPI--KAVAEEPD-SFNIY 274 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~i--~~~~~s~~-~~~l~ 274 (430)
.... ....+.++++ +|++..|+++..++.|+.||..++.. ..+ .++...- ..++|+|+ +.+++
T Consensus 213 ~~~~-----~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 213 LGST-----FSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp CCTT-----SCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ccch-----hcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 0000 0145678898 78555566677788999999987542 222 1122222 39999995 55566
Q ss_pred EEcCCCCEEEEEccCCeEEeEEeccc--------------cCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEE
Q 014114 275 IGNGSGDLASVDIRTGKLLGCFIGKC--------------SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~ 339 (430)
+-..++.|+.|+.... +..+.++. -.....++++|+|.++++-. .++.|+.|++.+++.....
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 6667788999997543 33333321 13478999999999888877 8899999998777644321
Q ss_pred eecc------------ccceeEEEeeecCCcce-eeecCCCcEEEecC
Q 014114 340 FLKQ------------HLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 340 ~~~~------------~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~ 374 (430)
-..+ .... ...++++++|.+ ++-..++.|+.+..
T Consensus 362 g~~~~~g~~~g~~~~~~~~~-P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNY-PYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSS-EEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCC-ceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1100 0122 589999999988 77777788877653
No 216
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.37 E-value=9.4e-11 Score=104.98 Aligned_cols=295 Identities=12% Similarity=0.048 Sum_probs=182.8
Q ss_pred CCcceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeee
Q 014114 13 PPLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 p~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
...+++.++.+|.|..|| .++ +....+..+... +.++.. .++|. |.+++.+ |..+|. +++.+..+.
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g-----~~~~~~~~~~~~--~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDG-----SVKWFFKSGEII--ECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTS-----CEEESSCGGGEE--EECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred cCCeEEEEcCCCEEEEEC-CCC-----cEEEEEecCCCc--ccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEEE
Confidence 356788888899999999 554 332222222111 223333 23343 6666655 888886 676655443
Q ss_pred ecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeecc-CCceEEEEEc
Q 014114 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~ 171 (430)
.... ......+. . +.+..++.++.+..++.. .. ..|.... ...+.++...
T Consensus 95 ~~~~--------~~~~~~~~--~--------~~l~v~t~~~~l~~~d~~-g~----------~~~~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 95 TKKA--------IVSDFTIF--E--------DILYVTSMDGHLYAINTD-GT----------EKWRFKTKKAIYATPIVS 145 (330)
T ss_dssp C-------------CCEEEE--T--------TEEEEECTTSEEEEECTT-SC----------EEEEEECSSCCCSCCEEC
T ss_pred CCCC--------cccCceEE--C--------CEEEEEecCCEEEEEcCC-CC----------EEEEEcCCCceeeeeEEc
Confidence 2110 11111111 1 377888888888888754 11 1233222 2334556666
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 251 (430)
+++. |+.++.++.|..+|.. ++.++.+.... ..+.++.+ .+++.+ ..++ +.|..+| .+++. .
T Consensus 146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--d~~g~l-~v~t--~~l~~~d-~~g~~-~ 207 (330)
T 3hxj_A 146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASI--GKDGTI-YFGS--DKVYAIN-PDGTE-K 207 (330)
T ss_dssp TTSC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTCCE-EEES--SSEEEEC-TTSCE-E
T ss_pred CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEE--cCCCEE-EEEe--CEEEEEC-CCCcE-E
Confidence 6666 5557888999999998 88777665432 33555566 556654 4445 8899999 55443 4
Q ss_pred EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..+......+.++...+++ .|++++.++.|..+|. +++.+..+... ...+.++.+.+++ .|..++.+|.|..+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTD-TIYFGSYDGHLYAINP- 282 (330)
T ss_dssp EEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTS-CEEEECTTCEEEEECT-
T ss_pred EEEccCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCC-eEEEecCCCCEEEECC-
Confidence 5555555668888888877 4566667788888885 56666666554 4444556666566 4667778888999995
Q ss_pred CCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+++.+..+.+. ...+.++...++|.+..++.+|.+.+.....
T Consensus 283 ~g~~~~~~~~~---~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 DGTEKWNFETG---SWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TSCEEEEEECS---SCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred CCcEEEEEEcC---CccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 77777764332 2335677888899998899999999876654
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.36 E-value=2.8e-14 Score=129.95 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=142.1
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
++..|++++.||.|..||..+|+.+..+.. . .+.+..+.. ++..+++++.+|.+..|+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---------~~~s~p~~~--------~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---------PVLQVPTHV--------EEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---------CSCCCC-------------CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---------CceecceEc--------CCCEEEEeCCCCEEEEEECCCC
Confidence 356799999999999999999999988865 2 111111111 2236677789999999987643
Q ss_pred cccccCCcceeeEEeeccCCceEE-EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEe
Q 014114 144 KVSAESSCSTVKSWNVCASGTIAF-SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
. .+..|.......+.+ ..+. .+..+++++.++.|+.||..+|+.++.+..+. ...+
T Consensus 70 ~--------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------------~~~~- 126 (369)
T 2hz6_A 70 E--------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------------ADSL- 126 (369)
T ss_dssp C--------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------
T ss_pred c--------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------------cccc-
Confidence 2 122222211111100 0111 34577888899999999999999988876542 1223
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCC---CEEEEEcCCCCEEEEEccCCeEEeEEecc
Q 014114 223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 223 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
+|++..+++++.++.|+.||..+++. +..+..+. ....++.++. ..+++++.+|.|+.||..+++.+..+..
T Consensus 127 -~p~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~- 201 (369)
T 2hz6_A 127 -SPSTSLLYLGRTEYTITMYDTKTREL-RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY- 201 (369)
T ss_dssp -------EEEEEEEEEEECCCSSSSSC-CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-
T ss_pred -cccCCEEEEEecCCEEEEEECCCCCE-EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-
Confidence 45778899999999999999998764 44433221 1223344432 4677888999999999999999888774
Q ss_pred ccCcEE-EEEEcCCCCEEEE--EeCCCeEEEEeCCCCc----eeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 300 CSGSIR-SIARHPTLPIIAS--CGLDSYLRFWDIKTRQ----LLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 300 ~~~~v~-~i~~s~~~~~l~s--~~~d~~v~iwd~~~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
..++. ...+++++...+. ...++.++.+|..+|+ .+....+.+..... . ..++.++.++.+|.|..+
T Consensus 202 -~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~~sp----~-~~~g~lyv~~~~G~l~al 275 (369)
T 2hz6_A 202 -ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAK----S-KLTPTLYVGKYSTSLYAS 275 (369)
T ss_dssp -SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCCHHHHH----H-HSEEEECBEECSSCEECC
T ss_pred -CCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCcccccc----c-cccceEEEecccCCEEec
Confidence 34444 3456666643211 0114567778877777 55553222221111 1 124555677778888877
Q ss_pred cCC
Q 014114 373 NGN 375 (430)
Q Consensus 373 ~~~ 375 (430)
+..
T Consensus 276 ~~~ 278 (369)
T 2hz6_A 276 PSM 278 (369)
T ss_dssp EEE
T ss_pred Ccc
Confidence 665
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=3.8e-09 Score=94.35 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=139.2
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 204 (430)
.+++...++.|..|+... +.++.+.. ...+.+++++++++++++. .+ .|.+||..+++.........
T Consensus 63 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 63 AWWFNILERELHELHLAS---------GRKTVHAL--PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEGGGTEEEEEETTT---------TEEEEEEC--SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSST
T ss_pred EEEEECCCCEEEEEECCC---------CcEEEEEC--CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC
Confidence 566667778888887642 23344442 4678999999999877754 44 49999998877543322111
Q ss_pred CCCCCcccCcceeEeEEeeCCCCCEEEEEeC------CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE-c
Q 014114 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N 277 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~ 277 (430)
.. ....+..+.+ +|+++++++... .+.|..++ .++ +..+..+......++|+|+++.|+.+ +
T Consensus 130 ~~-----~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 130 DL-----PGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp TC-----TTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 00 1145788899 889987665432 24566666 332 33333333457789999999877554 4
Q ss_pred CCCCEEEEEcc--CC-e-----EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeE
Q 014114 278 GSGDLASVDIR--TG-K-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 278 ~dg~v~iwd~~--~~-~-----~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i 349 (430)
.++.|.+||+. ++ . .+..+... ...+..++++++|.++++...++.|.+||. +++.+..+.+. ...+
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---~~~~ 273 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---GKQT 273 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS---CSBE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC---CCCc
Confidence 56889999985 55 3 22223222 456788999999988777767789999998 67777664332 2236
Q ss_pred EEeeec-CCcce--eeecCC
Q 014114 350 FDSAFA-DKEVA--NAAADA 366 (430)
Q Consensus 350 ~~~~~s-~~g~~--~~~~~d 366 (430)
.+++|+ +++.. ++...+
T Consensus 274 ~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEESTTSCEEEEEEBCT
T ss_pred EEEEEecCCCCEEEEEecCC
Confidence 899998 88765 444443
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=3e-09 Score=98.02 Aligned_cols=240 Identities=12% Similarity=0.063 Sum_probs=151.0
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
...+++ .|+|+++++...++.|++||..+++........ .... +.+... +..++.+..++
T Consensus 133 P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~~~~--------g~~l~~~d~~~ 192 (409)
T 3hrp_A 133 MWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAVTKD--------KQRVYSIGWEG 192 (409)
T ss_dssp EEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEECTT--------SSEEEEEBSST
T ss_pred ceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeEecC--------CCcEEEEecCC
Confidence 345555 577887778778899999999777655444321 1112 444332 23677776655
Q ss_pred --eeEEEEeeeecccccCCcceeeEE---eeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCC
Q 014114 134 --KASMRSIEVTKVSAESSCSTVKSW---NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 134 --~i~v~~~~~~~~~~~~~~~~i~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
.+.+++..... ..+.. .......+.+++++|++..|+++..++.|+.||+.++..............
T Consensus 193 ~~~I~~~d~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 193 THTVYVYMKASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp TCEEEEEEGGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred CceEEEEEcCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 56666543211 11111 011345678899999555666677788999999987754322110000000
Q ss_pred CcccCcceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeeecC---------------CCeEEEEeeCCCCE
Q 014114 209 GIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDSFN 272 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~ 272 (430)
. ..+...++| +| ++.++++-..++.|+.|+.... +..+.++. .....++++|+|++
T Consensus 265 ~---~~P~~~ia~--~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l 336 (409)
T 3hrp_A 265 G---TNPGPYLIY--YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF 336 (409)
T ss_dssp C---CSSCCEEEE--ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred C---CCccccEEE--eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence 0 011138899 67 4666666677889999998652 33333332 34789999999997
Q ss_pred EEEEc-CCCCEEEEEccCCeEEeEEecc--------------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 014114 273 IYIGN-GSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 273 l~~~~-~dg~v~iwd~~~~~~~~~~~~~--------------~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~ 330 (430)
+++-. .++.|+.|++.+++.. .+.++ .-.....|++++++.++++-..++.|+.+++
T Consensus 337 yvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 77777 7889999998777643 33332 0135899999999888888888888888765
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=2.4e-09 Score=105.35 Aligned_cols=286 Identities=11% Similarity=0.073 Sum_probs=175.4
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCC--CCCCce-EEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ--PEDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
..|++++.++.|..+|..+|+.+..+......... .....+ ..+.+ .++.++.++.++.+..+|...
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----------WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----------ETTEEEEECTTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----------ECCEEEEEccCCEEEEEECCC
Confidence 45888888999999999999999887652211000 000000 00111 224788888899998888754
Q ss_pred ecccccCCcceeeEEeeccC-C--ceEEEEEcC--CCCEEEEec------CCCeEEEEECCCCceeeeecCCCCCCCCc-
Q 014114 143 TKVSAESSCSTVKSWNVCAS-G--TIAFSKVDI--SEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI- 210 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~-~--~i~~~~~~~--~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~- 210 (430)
.. .+|..... . ....+..+| .+..++++. .++.|+.||..+|+.++.+..........
T Consensus 141 G~----------~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 141 GQ----------RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp CC----------EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred CC----------EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 33 13443221 0 001111122 133444443 37899999999999999876321110000
Q ss_pred ---------------------ccCcceeEeEEeeCCCCCEEEEEeCCCc-------------------EEEEECCCCCcc
Q 014114 211 ---------------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQ-------------------VRLYDTSAQRRP 250 (430)
Q Consensus 211 ---------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~-------------------i~~wd~~~~~~~ 250 (430)
........+++ +|+..+++.++.++. |..||..+++.
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~- 287 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY- 287 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-
T ss_pred ccccccccccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-
Confidence 00011125677 778889999888764 99999999874
Q ss_pred eEEeee--cC-------CCeEEEEeeCCCC---EEEEEcCCCCEEEEEccCCeEEeEEeccccC----------------
Q 014114 251 VMSFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSG---------------- 302 (430)
Q Consensus 251 ~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------- 302 (430)
+..++. |. .++.......+|+ .++.++.+|.++++|..+|+++.........
T Consensus 288 ~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 288 VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence 555543 21 1222223333564 7889999999999999999987543321000
Q ss_pred ----------------------cEEEEEEcCCCCEEEEEeC---------------------------------------
Q 014114 303 ----------------------SIRSIARHPTLPIIASCGL--------------------------------------- 321 (430)
Q Consensus 303 ----------------------~v~~i~~s~~~~~l~s~~~--------------------------------------- 321 (430)
....++|+|+..++++...
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 447 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL 447 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence 0112688888877776532
Q ss_pred ------CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 322 ------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 322 ------d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
+|.|+.||+.+++.+..+..... .....+...+.+ ++++.|+.|+.||..+.+
T Consensus 448 ~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 448 EMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp HHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 47899999999999988544322 123345555556 888999999999987654
No 221
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.30 E-value=1.1e-09 Score=102.64 Aligned_cols=265 Identities=12% Similarity=0.045 Sum_probs=172.5
Q ss_pred EEEEccCCeEEEeccCCCceeeeeeecCCCCCCC---------------------------------CCCceEEEEeecc
Q 014114 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP---------------------------------EDDGIVGLHLFKR 114 (430)
Q Consensus 68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~~~~~~ 114 (430)
+.+|+..|.|+|+-+.+++.+..+..+.+....+ .+..-..+...+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678999999999999999988887755443321 0001111222111
Q ss_pred CccccccCCc-eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEE-c-CCCCEEEEec----------
Q 014114 115 QREESSSRSR-TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG---------- 181 (430)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~-~~~~~l~~~~---------- 181 (430)
.. ++. .++....++.+.+.++.... .+++..+.....+..+++ + |++.++++++
T Consensus 98 ~~-----DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 98 KY-----DGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp EE-----EEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred Cc-----CCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 11 222 34444455668888766432 444455555667889998 5 8999999884
Q ss_pred --------CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC----------------
Q 014114 182 --------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------------- 237 (430)
Q Consensus 182 --------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---------------- 237 (430)
.++.+.+.|..+.+.++++.-.. ....+++ +|+++++++.+.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg----------~pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG----------NLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESS----------CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCC----------CccceEE--CCCCCEEEEEecCcccCcchhhccccccce
Confidence 35679999999999888876421 1233455 77888888777543
Q ss_pred ----------------------cEEEEECCC--CCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCe-
Q 014114 238 ----------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK- 291 (430)
Q Consensus 238 ----------------------~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~- 291 (430)
.|.+.|..+ +...+..+... ....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 467777776 33223444432 3567889999999887766 67899999998653
Q ss_pred -----------EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeeEEeec---cccce
Q 014114 292 -----------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT----------RQLLSAVFLK---QHLNE 347 (430)
Q Consensus 292 -----------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~~---~~~~~ 347 (430)
....+.. ......++|+|+|...++.-.|++|.+||+.. .+.+..+... +|...
T Consensus 312 ~~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~ 389 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT 389 (595)
T ss_dssp HHHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE
T ss_pred ccccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccccee
Confidence 3344433 45789999999994445556899999999987 5566664432 22111
Q ss_pred eEEEeeecCCccee
Q 014114 348 VVFDSAFADKEVAN 361 (430)
Q Consensus 348 ~i~~~~~s~~g~~~ 361 (430)
.....++|||+++
T Consensus 390 -~~g~t~~~DGk~l 402 (595)
T 1fwx_A 390 -VMGETLDATNDWL 402 (595)
T ss_dssp -TTTTSTTCCSSEE
T ss_pred -ccceEeCCCCCEE
Confidence 1334678999993
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.29 E-value=9.9e-09 Score=93.67 Aligned_cols=272 Identities=13% Similarity=0.092 Sum_probs=168.3
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCC-CCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
..|++++.++.|..+|..+|+.+..+......... .....+.+.... .++.++.++.++.+..++.....
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---------SGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---------ETTEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---------eCCEEEEEcCCCEEEEEECCCCC
Confidence 46888888999999999999988777652211000 001223222222 22478888888888888865322
Q ss_pred ccccCCcceeeEEeeccCCceEE-EEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAF-SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+|.......+.+ ... .+..+++++.++.|..+|..+++.++......... .. ........
T Consensus 125 ----------~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~~---~~~~~~~~-- 186 (376)
T 3q7m_A 125 ----------VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-SL---RGESAPTT-- 186 (376)
T ss_dssp ----------EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---------CCCCCCEE--
T ss_pred ----------EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-ee---cCCCCcEE--
Confidence 2354443332211 111 24577788899999999999999998876542110 00 00112222
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCC----------e-EEEEeeCCCCEEEEEcCCCCEEEEEccCCeE
Q 014114 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 224 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 292 (430)
.+..+++++.++.|..+|..+++. +......... + ....+ .+..+++++.++.+..+|..+++.
T Consensus 187 --~~~~v~~g~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 187 --AFGAAVVGGDNGRVSAVLMEQGQM-IWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp --ETTEEEECCTTTEEEEEETTTCCE-EEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCE
T ss_pred --ECCEEEEEcCCCEEEEEECCCCcE-EEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcE
Confidence 245677888899999999998764 4444321100 0 11111 245788888899999999999998
Q ss_pred EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
+..... .....+.. ++..|+.++.++.|..+|..+++.+.... ......+..... .++.++.++.+|.|.++
T Consensus 262 ~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 262 MWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS--DLLHRLLTSPVL-YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp EEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC--TTTTSCCCCCEE-ETTEEEEECTTSEEEEE
T ss_pred EeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec--ccCCCcccCCEE-ECCEEEEEeCCCeEEEE
Confidence 876653 23444444 46678888889999999999999887642 111111122222 24556788889999999
Q ss_pred cCCCC
Q 014114 373 NGNDT 377 (430)
Q Consensus 373 ~~~~~ 377 (430)
|....
T Consensus 334 d~~tG 338 (376)
T 3q7m_A 334 NVEDG 338 (376)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 97663
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.5e-09 Score=96.06 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=137.8
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 204 (430)
.+++...++.+..|+.. +.+..+.. ....+..++++++++++++...++.|.+|+.. ++.........
T Consensus 59 l~~~d~~~~~i~~~~~~----------g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRED----------GTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp EEEEETTTTEEEEEETT----------SCEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred EEEEECCCCEEEEEeCC----------CCEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 56777788888888642 22344442 34668899999999977766667889999986 54322221111
Q ss_pred CCCCCcccCcceeEeEEeeCCCCCEEEE----EeC-------------CCcEEEEECCCCCcceEEeeecCCCeEEEEee
Q 014114 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
.. ....++.+++ +++++++++ |.. .+.|+.||..+++. . .+. .......++|+
T Consensus 127 ~~-----~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~-~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 127 GK-----RLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-Q-RMA-DLDHPNGLAFS 196 (305)
T ss_dssp TE-----ECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-E-EEE-EESSEEEEEEC
T ss_pred CC-----ccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-E-EEe-cCCCCcceEEc
Confidence 00 0134677888 889988776 332 25688888765542 2 222 33467889999
Q ss_pred CCCCEEEEEcCC------CCEEEEEccCCeEE--eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 268 ~~~~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
|+++.|+++... +.|.+|++..+... ..+..........++++++|++.++ ..++ |.+|+. .++.+..+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG-VCVFDS-DGQLLGHI 273 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE-EEEECT-TSCEEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc-EEEECC-CCCEEEEE
Confidence 999988777665 68999998765411 1121111344567899999985444 4454 999997 57777775
Q ss_pred eeccccceeEEEeeecCCcce-eeecCCC
Q 014114 340 FLKQHLNEVVFDSAFADKEVA-NAAADAP 367 (430)
Q Consensus 340 ~~~~~~~~~i~~~~~s~~g~~-~~~~~d~ 367 (430)
..+. .+.+++|++++.. ..++.++
T Consensus 274 ~~~~----~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 274 PTPG----TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ECSS----CCCEEEECTTSCEEEEEETTE
T ss_pred ECCC----ceeEEEEeCCCCEEEEEcCCe
Confidence 4332 2578899998876 4444443
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=3.2e-09 Score=104.19 Aligned_cols=285 Identities=12% Similarity=0.073 Sum_probs=179.5
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCC--CCCce-EEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
..|++++.++.|..+|..+|+.+..+.........+ ..+.+ ..+.+ .++.++.++.++.+..+|...
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----------~~~~v~v~~~dg~l~alD~~t 147 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----------WKGKVYVGAWDGRLIALDAAT 147 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----------ETTEEEEECTTSEEEEEETTT
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----------ECCEEEEEcCCCEEEEEECCC
Confidence 357888889999999999999998886532110000 00000 01111 124788888899988888754
Q ss_pred ecccccCCcceeeEEeeccC------CceEEEEEcCCCCEEEEecC------CCeEEEEECCCCceeeeecCCCCCCCCc
Q 014114 143 TKVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~------~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 210 (430)
.. .+|..... ..+.+--.- .+..+++++. ++.|+.||..+++.++.+..........
T Consensus 148 G~----------~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~ 216 (677)
T 1kb0_A 148 GK----------EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP 216 (677)
T ss_dssp CC----------EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred CC----------EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccc
Confidence 33 13443322 111110000 2345555553 7899999999999999886543221000
Q ss_pred -----------------------ccCcceeEeEEeeCCCCCEEEEEeCCC-------------------cEEEEECCCCC
Q 014114 211 -----------------------FTPTWFTSAAFLSIDDHRKFVAGTNDH-------------------QVRLYDTSAQR 248 (430)
Q Consensus 211 -----------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~~wd~~~~~ 248 (430)
........+++ ++++.+++.++.++ .|..+|..+++
T Consensus 217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~ 294 (677)
T 1kb0_A 217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK 294 (677)
T ss_dssp CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred ccccccccccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC
Confidence 00111235677 77888888887764 49999999977
Q ss_pred cceEEeee--cC-------CCeEEEEeeCCC---CEEEEEcCCCCEEEEEccCCeEEeEEecccc----------CcE--
Q 014114 249 RPVMSFDF--RE-------TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCS----------GSI-- 304 (430)
Q Consensus 249 ~~~~~~~~--~~-------~~i~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~v-- 304 (430)
. +..++. |. .....+....+| ..++.++.+|.|+++|..+++.+..+..... .++
T Consensus 295 ~-~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~ 373 (677)
T 1kb0_A 295 Y-KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGI 373 (677)
T ss_dssp E-EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred E-EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeec
Confidence 4 555543 21 122223334477 6889999999999999999999877653200 011
Q ss_pred ----------------------EEEEEcCCCCEEEEEeC-----------------------------------------
Q 014114 305 ----------------------RSIARHPTLPIIASCGL----------------------------------------- 321 (430)
Q Consensus 305 ----------------------~~i~~s~~~~~l~s~~~----------------------------------------- 321 (430)
..++++|+..++++...
T Consensus 374 ~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 453 (677)
T 1kb0_A 374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS 453 (677)
T ss_dssp GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred cccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence 15688998888777543
Q ss_pred --CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 322 --DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 322 --d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
.+.|..||+.+++.+..+..... .+...+..++.+ +.++.|+.+++||....+
T Consensus 454 ~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 454 KPFGRLLAWDPVAQKAAWSVEHVSP----WNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp CCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCccEEEEEeCCCCcEEeecCCCCC----CcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 27899999999999988643322 244456666666 778899999999987644
No 225
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=1.7e-09 Score=106.06 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=174.3
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCCCCcce-----------EEEEeccCCCCCCceEEEEccCCeEEEecc
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSK-----------CVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~ 82 (430)
..+++.++.++.|.-+|..++ +.+-++....... .-+++ .+..|++++.|+.|..+|.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~dg~l~alD~ 134 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASG-----KELWRYDPEVAKVKARTSCCDAVNRGVAL------WGDKVYVGTLDGRLIALDA 134 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE------EBTEEEEECTTSEEEEEET
T ss_pred CCEEEEECCCCeEEEEECCCC-----hhceEECCCCCccccccccccCCccceEE------ECCEEEEEcCCCEEEEEEC
Confidence 357788888899999998776 3332222111000 00111 2346888999999999999
Q ss_pred CCCceeeeeeecCCCC-CCCCCCceEEEEeeccCccccccCCceEEEEcc------CCeeEEEEeeeeccc-----c-cC
Q 014114 83 LNGDLRVAISNAGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVS-----A-ES 149 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~v~~~~~~~~~-----~-~~ 149 (430)
.+|+.+..+....+.. ......++. . ++.++.+.. +|.+..+|....... . ..
T Consensus 135 ~tG~~~W~~~~~~~~~~~~~~~~P~v----~----------~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 200 (668)
T 1kv9_A 135 KTGKAIWSQQTTDPAKPYSITGAPRV----V----------KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD 200 (668)
T ss_dssp TTCCEEEEEECSCTTSSCBCCSCCEE----E----------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred CCCCEeeeeccCCCCCcceecCCCEE----E----------CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC
Confidence 9999998886522110 000111111 0 123444432 356666665432210 0 00
Q ss_pred Cc-----cee----------eEEee-ccCCceEEEEEcCCCCEEEEecCCC-------------------eEEEEECCCC
Q 014114 150 SC-----STV----------KSWNV-CASGTIAFSKVDISEKFSLFGGKGV-------------------EVNVWDLDKC 194 (430)
Q Consensus 150 ~~-----~~i----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg-------------------~v~iwd~~~~ 194 (430)
.. ..+ .+|.. ........++++|....++.+..++ .|..+|..++
T Consensus 201 p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 201 PALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 00 000 01110 0111223568888888888887766 3999999999
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCC---EEEEEeCCCcEEEEECCCCCcceEEeeecC------------C
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE------------T 259 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------------~ 259 (430)
+.++.++...................+ ..+++ .++.++.+|.++++|..+++. +....... .
T Consensus 281 ~~~W~~~~~~~~~wd~~~~~~~~~~d~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~d~~~g~ 357 (668)
T 1kv9_A 281 KLAWHYQVTPGDSWDFTATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGKVTWAEKVDLATGR 357 (668)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCCSEEEECTTTCC
T ss_pred ceeeEeecCCCccccccCCCCcEEEEe--ccCCcEEEEEEEECCCCEEEEEECCCCCE-eccccccccccccccccccCC
Confidence 999988753221111100111222222 12554 688899999999999998774 42222111 0
Q ss_pred C------------------------eEEEEeeCCCCEEEEEc------------------------------------CC
Q 014114 260 P------------------------IKAVAEEPDSFNIYIGN------------------------------------GS 279 (430)
Q Consensus 260 ~------------------------i~~~~~s~~~~~l~~~~------------------------------------~d 279 (430)
+ -..++++|+..++++.. .+
T Consensus 358 p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~ 437 (668)
T 1kv9_A 358 PVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS 437 (668)
T ss_dssp EEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred ccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc
Confidence 0 01257778766665421 23
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 342 (430)
|.|..||+.+++.+..+... .++....+...+.+++.++.|+.|+.||.++++.+..+.+.
T Consensus 438 g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 77999999999998877653 33333344456778899999999999999999999986554
No 226
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.27 E-value=2.6e-09 Score=102.66 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=176.3
Q ss_pred CcceEeecC-CCcEEEEEe-cCccCCcchhheecCCCCc-ce----------EEEEeccCCCCCCceEEEEccCCeEEEe
Q 014114 14 PLRALTFDS-LGLIKVIEA-RGEDGGVPKVVERWGDPHS-SK----------CVLAASIDDSQNDPLLAVARKNGLTDIL 80 (430)
Q Consensus 14 ~~~l~t~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~p~g~~l~~g~~dg~i~iw 80 (430)
..+++.++. ++.|.-+|. .++ +.+=++..... .. .-+++ .+..|++++.|+.|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~dg~l~al 130 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPG-----KIVWQHKPKQDASTKAVMCCDVVDRGLAY------GAGQIVKKQANGHLLAL 130 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCc-----cEEEEEcCCCCccccccccccccccccEE------ECCEEEEEeCCCEEEEE
Confidence 356777877 888999998 665 33222211110 00 00111 23468889999999999
Q ss_pred ccCCCceeeeeeecCCC-CCCCCCCceEEEEeeccCccccccCCceEEEEcc------CCeeEEEEeeeecccccCCcce
Q 014114 81 NPLNGDLRVAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 81 d~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~i~v~~~~~~~~~~~~~~~~ 153 (430)
|..+|+.+......... .......++. .++.++.+.. +|.+..++......
T Consensus 131 D~~tG~~~W~~~~~~~~~~~~~~~~P~v--------------~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-------- 188 (571)
T 2ad6_A 131 DAKTGKINWEVEVCDPKVGSTLTQAPFV--------------AKDTVLMGCSGAELGVRGAVNAFDLKTGEL-------- 188 (571)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEE--------------ETTEEEEECBCGGGTCCCEEEEEETTTCCE--------
T ss_pred ECCCCCEEEEecCCCCCccceeccCCEE--------------ECCEEEEEecCCccCCCCEEEEEECCCCcE--------
Confidence 99999998877642100 0000011111 0124555544 56777776543321
Q ss_pred eeEEeeccC--------------------------------------C-ceEEEEEcCCCCEEEEecCC-----------
Q 014114 154 VKSWNVCAS--------------------------------------G-TIAFSKVDISEKFSLFGGKG----------- 183 (430)
Q Consensus 154 i~~~~~~~~--------------------------------------~-~i~~~~~~~~~~~l~~~~~d----------- 183 (430)
+|..... . ....+++++....++.+..+
T Consensus 189 --~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 189 --KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp --EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred --EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCC
Confidence 1221111 0 01235666766677666532
Q ss_pred -----CeEEEEECCCCceeeeecCCCCCCCCcc-cCcceeEeEEeeCCCCC---EEEEEeCCCcEEEEECCCCCcceEEe
Q 014114 184 -----VEVNVWDLDKCEKIWTAKPPPKNSLGIF-TPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 184 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~ 254 (430)
+.|..+|..+++.++.++.......... ....+. +.. ..+++ .++.++.+|.++++|..+++. +..+
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-~w~~ 342 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQ--PVNGKMTPLLSHIDRNGILYTLNRENGNL-IVAE 342 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE--EETTEEEEEEEEECTTSEEEEEETTTCCE-EEEE
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eec--ccCCcEEEEEEEeCCCcEEEEEECCCCCE-Eeee
Confidence 3699999999999998865322111000 001111 111 23563 577888999999999998764 4443
Q ss_pred eecC-------------CCe--------------------------EEEEeeCCCCEEEEEc------------------
Q 014114 255 DFRE-------------TPI--------------------------KAVAEEPDSFNIYIGN------------------ 277 (430)
Q Consensus 255 ~~~~-------------~~i--------------------------~~~~~s~~~~~l~~~~------------------ 277 (430)
.... .++ ..++++|+..+|++.+
T Consensus 343 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 422 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ 422 (571)
T ss_dssp ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence 3211 111 2457888877777653
Q ss_pred -------------------CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 278 -------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 278 -------------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
.++.|..||+.+++.+.++... ..+.+..+...+.+++.++.|+.|+.||.++|+.+..
T Consensus 423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 3478999999999988777642 2333323333456777899999999999999999998
Q ss_pred EeeccccceeEEEeeecCCcce
Q 014114 339 VFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 339 ~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+.+...... .-+.+..+|+.
T Consensus 501 ~~~~~~~~~--~p~~~~~~G~~ 520 (571)
T 2ad6_A 501 FKMPSGGIG--SPMTYSFKGKQ 520 (571)
T ss_dssp EECSSCCCS--CCEEEEETTEE
T ss_pred EeCCCCcEe--eeEEEEECCEE
Confidence 654432111 22345677776
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.26 E-value=4.8e-09 Score=89.23 Aligned_cols=208 Identities=12% Similarity=-0.002 Sum_probs=143.4
Q ss_pred eeEEeeccCCceEEEEEcCCCCEEEEecC--CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE
Q 014114 154 VKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
+..+..........+.|++++.++++.+. ++.|.++|+.+++.+..+..... .....+++ . .+...+
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~--~-g~~lyv 80 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTL--L-NEKLYQ 80 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEEE
T ss_pred EEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEE--e-CCEEEE
Confidence 34443322234689999998654444443 57999999999999888764321 12334555 2 234444
Q ss_pred EEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc----cCcEEEE
Q 014114 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI 307 (430)
Q Consensus 232 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~i 307 (430)
+.-.++.+.++|..+.+ .+..+..... ....+++|++.++++..++.|.++|..+.+.+..+.-.. -..++.+
T Consensus 81 ~t~~~~~v~viD~~t~~-v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLS-NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EETTCSEEEEEETTTTE-EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEecCCEEEEEECCCCc-EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 55568899999999865 4666654311 123456788888887788899999999998888776420 1246788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecccc----------ceeEEEeeecCCcce--eeecCCCcEEEecCC
Q 014114 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL----------NEVVFDSAFADKEVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 308 ~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----------~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~ 375 (430)
.|. ++..++....++.|.+.|..+++.+..+.+.+-. ......++|+|++.. +++...+.|.+.+..
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 7755555556789999999999999998764321 135689999999876 777788888887765
Q ss_pred C
Q 014114 376 D 376 (430)
Q Consensus 376 ~ 376 (430)
.
T Consensus 237 ~ 237 (266)
T 2iwa_A 237 L 237 (266)
T ss_dssp E
T ss_pred c
Confidence 4
No 228
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=6.5e-09 Score=91.55 Aligned_cols=214 Identities=12% Similarity=0.009 Sum_probs=135.6
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
++.++++...++.|..||..+++. ..+.. ...+.++.+.+. + .++.+. ++.+.+|+....
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~~d--------G-~l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALRQS--------G-GYVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEBTT--------S-SEEEEE-TTEEEEEETTTT
T ss_pred CCEEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEECCC--------C-CEEEEE-CCeEEEEECCCC
Confidence 345677777889999999977664 22221 135666665432 2 344444 567778775421
Q ss_pred cccccCCcceeeEE-eec---cCCceEEEEEcCCCCEEEEecC-----------CCeEEEEECCCCceeeeecCCCCCCC
Q 014114 144 KVSAESSCSTVKSW-NVC---ASGTIAFSKVDISEKFSLFGGK-----------GVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 144 ~~~~~~~~~~i~~~-~~~---~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
.+..+ ... ....+..++++|+++++++... .+.|+.++.. ++.......
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~------ 147 (297)
T 3g4e_A 84 ---------SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ------ 147 (297)
T ss_dssp ---------EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE------
T ss_pred ---------cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec------
Confidence 22222 111 1234788999999997664421 2345555443 332221111
Q ss_pred CcccCcceeEeEEeeCCCCCEEE-EEeCCCcEEEEECC--CCCc----ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCC
Q 014114 209 GIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS--AQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~~wd~~--~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 281 (430)
....+.++| +|+++.|+ +.+.++.|.+||+. ++.. .+..+..+......++++++|++.++....+.
T Consensus 148 ----~~~pngi~~--spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 148 ----VDISNGLDW--SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp ----ESBEEEEEE--CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred ----cccccceEE--cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 134678899 89998665 45567899999974 3321 11222223356789999999987777777788
Q ss_pred EEEEEccCCeEEeEEeccccCcEEEEEEc-CCCCEEEEEe
Q 014114 282 LASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG 320 (430)
Q Consensus 282 v~iwd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~~ 320 (430)
|.+||..+++.+..+..+ ...+++++|. |+++.|+.++
T Consensus 222 v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEE
T ss_pred EEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEc
Confidence 999999989999888876 6789999998 8887665554
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=3.6e-12 Score=115.99 Aligned_cols=205 Identities=11% Similarity=0.018 Sum_probs=116.8
Q ss_pred CceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecC
Q 014114 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 123 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 202 (430)
++.+++++.+|.+..|+..... .+|.... +.+.+..+..++..+++++.|+.|+.||..+++.++....
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 4588899999999999975432 2455544 4555555556777888888999999999999988777654
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
+.. ..+.+.-. -..+..+++++.++.|+.||..+++. +..+..+. ...++|++..+++++.|+.|
T Consensus 78 ~~~--------~~~~~sp~--~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 78 TIP--------ELVQASPC--RSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTI 142 (369)
T ss_dssp CHH--------HHHTTCSC--C-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEE
T ss_pred cCc--------cccccCce--EecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEE
Confidence 311 00100000 01345677888899999999998774 55555443 23456788899999999999
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
+.||.++++.+..+..+ . ....+++++. ..+++++.||.|+.||..+|+.+....+. ..++....++++|.
T Consensus 143 ~a~d~~tG~~~W~~~~~-~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYF-D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREGL 216 (369)
T ss_dssp ECCCSSSSSCCCEEEEE-E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSSC
T ss_pred EEEECCCCCEEEeEecc-c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCce
Confidence 99999999887766532 1 2233444432 46777889999999999999998875432 22334455666764
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=3.9e-09 Score=95.07 Aligned_cols=205 Identities=9% Similarity=-0.020 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCEEEEecC-----CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE-EEEe-
Q 014114 162 SGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGT- 234 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~- 234 (430)
-..+..++++++++++++-.. ++.|.+||+.+++.+..+....... .....+..+++ ++++..+ ++..
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~v--d~~~g~~yvtd~~ 140 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAV--DLIHNFVYISDPA 140 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEE--ETTTTEEEEEECC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEE--ecCCCEEEEEcCc
Confidence 357899999999876665433 5789999999998776665332110 11245678888 6654444 5444
Q ss_pred --CCCcEEEEECCCCCcceEEeeec-----------------------------CCCeEEEEeeCCCCEEEEEcCCC-CE
Q 014114 235 --NDHQVRLYDTSAQRRPVMSFDFR-----------------------------ETPIKAVAEEPDSFNIYIGNGSG-DL 282 (430)
Q Consensus 235 --~dg~i~~wd~~~~~~~~~~~~~~-----------------------------~~~i~~~~~s~~~~~l~~~~~dg-~v 282 (430)
.++.|.+||+.+++. ...+..| ...+..|+|+|+++.|+++..++ .|
T Consensus 141 ~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp SGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred cCCCCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 578999999986542 3333221 02357899999999888887666 34
Q ss_pred EEEEcc---CCe-----EEe--EEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEe
Q 014114 283 ASVDIR---TGK-----LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 283 ~iwd~~---~~~-----~~~--~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~ 352 (430)
..++.. .+. ... ...++ ......++++++|.++++...++.|.+||..+++.... ..........++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~--~~~~~~~~p~~v 296 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL--VTDEKLSWTDSF 296 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE--EECGGGSCEEEE
T ss_pred EEEEHHHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE--EECCceecCCee
Confidence 444432 110 000 11222 34567799999999999988899999999856664332 211112335899
Q ss_pred eecCCcce-eeecCCCcEEEecCC
Q 014114 353 AFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 353 ~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+|.++|.+ ++.+..+.+.+|...
T Consensus 297 a~~~~g~l~v~~~~~~~~~~f~~~ 320 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQLHHSAPLNAG 320 (343)
T ss_dssp EECTTSCEEEEECCGGGSGGGBTT
T ss_pred EECCCCcEEEEeCccccccccccC
Confidence 99999988 777766666666543
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=2.9e-09 Score=105.32 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=145.2
Q ss_pred EEEEeccCCCCCCceEEE-----EccCCeEEEeccCCCceeee-eeecCCCCCCCCCCceEEEEeeccCccccccCCceE
Q 014114 53 CVLAASIDDSQNDPLLAV-----ARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 53 ~~~~~~~~~~p~g~~l~~-----g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
.+-.+++ +|||++||. |+....|++||+.+++.+.. +... ....+.|. ... .|
T Consensus 130 ~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~----------k~~~~~Ws-Dg~--------~l 188 (693)
T 3iuj_A 130 ALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV----------KFSGISWL-GNE--------GF 188 (693)
T ss_dssp EEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE----------ESCCCEEE-TTT--------EE
T ss_pred EEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc----------eeccEEEe-CCC--------EE
Confidence 3555666 899998885 33345799999999986543 2211 01123333 222 44
Q ss_pred EEEccC-------------CeeEEEEeeeecccccCCcceeeEEeec--cCCceEEEEEcCCCCEEEEec----CCCeEE
Q 014114 127 LTCTTK-------------GKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGG----KGVEVN 187 (430)
Q Consensus 127 ~~~~~~-------------g~i~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~----~dg~v~ 187 (430)
+.+..+ ..|++|++..... ....++... +......+.|+|++++|+... ..+.|+
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~------~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQE------DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGG------GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcc------cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 444443 3467776543221 123344432 234567899999999886543 235899
Q ss_pred EEECCCCc-eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEE-EEeCC---CcEEEEECCCCCc-ceEEeeecCCCe
Q 014114 188 VWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND---HQVRLYDTSAQRR-PVMSFDFRETPI 261 (430)
Q Consensus 188 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d---g~i~~wd~~~~~~-~~~~~~~~~~~i 261 (430)
++|+.++. ....+..+. ...... + ++++..|+ ....+ +.|..+|+.++.. ....+..|...+
T Consensus 263 ~~d~~~~~~~~~~l~~~~---------~~~~~~-~--~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 330 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDL---------DADVSL-V--DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV 330 (693)
T ss_dssp EEETTSTTCCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEECCCCCCceEEEeCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE
Confidence 99997763 233333322 112222 3 34555554 44333 5799999987542 134556665555
Q ss_pred EEEEeeCCCCEEEEEcCCC---CEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc
Q 014114 262 KAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQ 334 (430)
Q Consensus 262 ~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d----~~v~iwd~~~~~ 334 (430)
. .|+++++.|+....++ .|++||+..+ ....+.....+.+..+.+++++..|+....+ +.|+.||+.+++
T Consensus 331 ~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 331 L--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp E--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred E--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 8889998887776544 6889998744 4445543225678888888888766555444 789999998776
Q ss_pred e
Q 014114 335 L 335 (430)
Q Consensus 335 ~ 335 (430)
.
T Consensus 408 ~ 408 (693)
T 3iuj_A 408 I 408 (693)
T ss_dssp E
T ss_pred E
Confidence 4
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=1.5e-09 Score=97.70 Aligned_cols=266 Identities=12% Similarity=-0.028 Sum_probs=159.7
Q ss_pred cEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEc----------cCCeEEEeccCCCceeeeeeec
Q 014114 25 LIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 25 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.|.+.|..+. +.+.++.....+ .+.+ +|||++|+++. .++.|.+||+.+++.+..+...
T Consensus 47 ~vsvID~~t~-----~v~~~i~vG~~P----~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCAGCG-----VTLGHSLGAFLS----LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTTT-----EEEEEEEECTTC----EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEECCCC-----eEEEEEeCCCCC----ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 7889999886 666666543333 2444 67888888875 4789999999999999988652
Q ss_pred CCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc--CCeeEE--EEeeeecccccCCcceeeEEeeccCCceEEEEE
Q 014114 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~i~v--~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
....+... .....+.+.+.. ..++.+.. .+.+.+ +|+.. ++.... .+. +.+
T Consensus 116 ~~~~~~~g-~~P~~ia~SpDG--------k~lyVan~~~~~~v~V~~iD~~t-----------v~~i~v--~~~---~~~ 170 (368)
T 1mda_H 116 DAPRFSVG-PRVHIIGNCASS--------ACLLFFLFGSSAAAGLSVPGASD-----------DQLTKS--ASC---FHI 170 (368)
T ss_dssp TSCSCCBS-CCTTSEEECTTS--------SCEEEEECSSSCEEEEEETTTEE-----------EEEEEC--SSC---CCC
T ss_pred CccccccC-CCcceEEEcCCC--------CEEEEEccCCCCeEEEEEEchhh-----------ceEEEC--CCc---eEE
Confidence 10000000 111224444432 35555543 456777 66543 111121 111 112
Q ss_pred cCCC-CEEEEecCCCeEEEEECCC-----CceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEEC
Q 014114 171 DISE-KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 171 ~~~~-~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~ 244 (430)
.|++ ..+++.+.||.+.+.|+.+ ++...... ....+. ..+. .+ +++..++..+. +.|.+.|+
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t----~~i~vg-~~P~---~~---~~~~~~~~vs~-~~V~viD~ 238 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT----GAQNCS-SQAA---QA---NYPGMLVWAVA-SSILQGDI 238 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC----TTSCBC-SCCE---EE---TTTTEEEECBS-SCCEEEEC
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee----eeeeCC-CCcc---cc---ccCCEEEEEcC-CEEEEEEC
Confidence 3333 3445566788888888876 43322110 000110 1222 23 44555555556 99999998
Q ss_pred CCCCc-ceEEeee----------cCCCeEEEEeeCCCCEEEEEcC---------CCCEEEEEccCCeEEeEEeccccCcE
Q 014114 245 SAQRR-PVMSFDF----------RETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 245 ~~~~~-~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~v 304 (430)
..... .+..+.. .......++++|+++.++++.. ++.+.++|+.+.+.+..+... ...
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p 316 (368)
T 1mda_H 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDS 316 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEE
T ss_pred CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCc
Confidence 75321 1111111 0112222689999988887643 235679999999999888764 468
Q ss_pred EEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeEEe
Q 014114 305 RSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 305 ~~i~~s~~~~-~l~s~~-~d~~v~iwd~~~~~~~~~~~ 340 (430)
..|+|+||++ ++++.. .++.|.++|+.+++.+..+.
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9999999997 566666 59999999999999998853
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=2.9e-08 Score=88.58 Aligned_cols=214 Identities=8% Similarity=-0.080 Sum_probs=133.4
Q ss_pred CCC-CceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEe
Q 014114 62 SQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~ 140 (430)
+|+ +.++++...++.|.+||..+++.. .+.. ...+.++.+.+.. .++.++.+ .+.+|+.
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~dg---------~l~v~~~~-gl~~~d~ 116 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKISDS---------KQLIASDD-GLFLRDT 116 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEETT---------EEEEEETT-EEEEEET
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeCCC---------eEEEEECC-CEEEEEC
Confidence 454 456677778899999998776543 2221 1256667654422 34444444 4777765
Q ss_pred eeecccccCCcceeeEE-eec---cCCceEEEEEcCCCCEEEEecC------CCeEEEEECCCCceeeeecCCCCCCCCc
Q 014114 141 EVTKVSAESSCSTVKSW-NVC---ASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~-~~~---~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 210 (430)
... .+..+ ... ....+..++++|+++++++... .+.|..++ +++.......
T Consensus 117 ~~g---------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-------- 177 (326)
T 2ghs_A 117 ATG---------VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-------- 177 (326)
T ss_dssp TTC---------CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--------
T ss_pred CCC---------cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--------
Confidence 321 22211 111 1235789999999987665432 25677676 4443322111
Q ss_pred ccCcceeEeEEeeCCCCCEEEEE-eCCCcEEEEECC--CC-C----cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCE
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTS--AQ-R----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~wd~~--~~-~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 282 (430)
......++| +|+++.++.+ +.++.|.+||+. ++ . ..+..+.........++++++|++.++...++.|
T Consensus 178 --~~~~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 178 --ISIPNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp --ESSEEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred --CcccCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence 123668888 8999876554 457899999986 44 2 1111222233457789999999877776667889
Q ss_pred EEEEccCCeEEeEEeccccCcEEEEEEc-CCCCEEEEEe
Q 014114 283 ASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG 320 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~~ 320 (430)
.+||. +++.+..+..+ ...+++++|+ +++..|+.++
T Consensus 254 ~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 254 DRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEE
T ss_pred EEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEe
Confidence 99998 67777777765 6679999998 8887665544
No 234
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.17 E-value=2e-08 Score=96.38 Aligned_cols=312 Identities=14% Similarity=0.134 Sum_probs=175.3
Q ss_pred CcceEeecC-CCcEEEEEe-cCccCCcchhheecCCCCcc-----------eEEEEeccCCCCCCceEEEEccCCeEEEe
Q 014114 14 PLRALTFDS-LGLIKVIEA-RGEDGGVPKVVERWGDPHSS-----------KCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (430)
Q Consensus 14 ~~~l~t~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~p~g~~l~~g~~dg~i~iw 80 (430)
..+++.++. ++.|.-+|. .++ +.+=++...... ..-+++...+.....+|++++.|+.|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-----~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al 136 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG-----TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-----SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC-----cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence 356778887 888999998 665 322222111100 00112211111011238889999999999
Q ss_pred ccCCCceeeeeeecCCC-CCCCCCCceEEEEeeccCccccccCCceEEEEc------cCCeeEEEEeeeecccccCCcce
Q 014114 81 NPLNGDLRVAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------TKGKASMRSIEVTKVSAESSCST 153 (430)
Q Consensus 81 d~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~g~i~v~~~~~~~~~~~~~~~~ 153 (430)
|..+|+.+......... .......++. . ++.++.++ .+|.+..++......
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v----~----------~g~V~vg~~g~e~g~~g~v~A~D~~TG~~-------- 194 (599)
T 1w6s_A 137 NAETGETVWKVENSDIKVGSTLTIAPYV----V----------KDKVIIGSSGAELGVRGYLTAYDVKTGEQ-------- 194 (599)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEE----E----------TTEEEECCBCGGGTCCCEEEEEETTTCCE--------
T ss_pred ECCCCCEEEeecCCCCCccceeecCCEE----E----------CCEEEEEecccccCCCCeEEEEECCCCcE--------
Confidence 99999998876542100 0000111111 1 12444444 256677666543321
Q ss_pred eeEEeeccCC--------------------------------------ce-EEEEEcCCCCEEEEecCC-----------
Q 014114 154 VKSWNVCASG--------------------------------------TI-AFSKVDISEKFSLFGGKG----------- 183 (430)
Q Consensus 154 i~~~~~~~~~--------------------------------------~i-~~~~~~~~~~~l~~~~~d----------- 183 (430)
+|...... .+ ..+++.+...+++.+..+
T Consensus 195 --~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~g 272 (599)
T 1w6s_A 195 --VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPG 272 (599)
T ss_dssp --EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred --EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCC
Confidence 12211111 11 134566777777777654
Q ss_pred -----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCC---CEEEEEeCCCcEEEEECCCCCcceEEee
Q 014114 184 -----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFD 255 (430)
Q Consensus 184 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 255 (430)
+.|..+|..+++.++.++................-+... ..++ ..++.++.+|.++++|..+++. +....
T Consensus 273 d~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~ 350 (599)
T 1w6s_A 273 DNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQK-DKDGKARKLLTHPDRNGIVYTLDRTDGAL-VSANK 350 (599)
T ss_dssp CCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-CTTSCEEEEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred CccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecc-ccCCcEEEEEEEECCCcEEEEEECCCCCE-eeccc
Confidence 489999999999999887543221111000111111210 1456 4677788999999999998774 44333
Q ss_pred ecC-------------CCe--------------------------EEEEeeCCCCEEEEEc-------------------
Q 014114 256 FRE-------------TPI--------------------------KAVAEEPDSFNIYIGN------------------- 277 (430)
Q Consensus 256 ~~~-------------~~i--------------------------~~~~~s~~~~~l~~~~------------------- 277 (430)
... .++ ..++++|+..++++..
T Consensus 351 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 110 111 2356777666655431
Q ss_pred --------------------CCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 278 --------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 278 --------------------~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
..|.|..||+.+++.+...... .++.+-.+...+.+++.++.|+.++.||.++|+.+.
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 3467899999999988776532 222211122256677789999999999999999999
Q ss_pred EEeeccccceeEEEeeecCCcce
Q 014114 338 AVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 338 ~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
.+.+..... ..-+.|..+|+.
T Consensus 509 ~~~l~~g~~--~~P~~y~~~G~q 529 (599)
T 1w6s_A 509 KFKIPSGAI--GYPMTYTHKGTQ 529 (599)
T ss_dssp EEECSSCCC--SCCEEEEETTEE
T ss_pred EeeCCCCcE--eccEEEEeCCEE
Confidence 876543221 123456677775
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=7.4e-09 Score=91.58 Aligned_cols=193 Identities=7% Similarity=-0.072 Sum_probs=127.7
Q ss_pred CceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
.......|+|+++ ++++...++.|..|+. +++. ..+.... ..+..+++ +++++++++...++.|.+
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~---------~~~~gl~~--d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDAT---------AFTNGNAV--DAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESC---------SCEEEEEE--CTTSCEEEEETTTTEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCC---------CccceeeE--CCCCCEEEEECCCCEEEE
Confidence 4566889999988 6667778899999998 4442 2222221 44788898 889987766656688999
Q ss_pred EECCCCCcceEEeeec-----CCCeEEEEeeCCCCEEEE----EcC-------------CCCEEEEEccCCeEEeEEecc
Q 014114 242 YDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYI----GNG-------------SGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~----~~~-------------dg~v~iwd~~~~~~~~~~~~~ 299 (430)
|+.. ++ +..+..+ ...+..++++|+|+++++ |.. .+.|..||..+++..... .
T Consensus 112 ~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~ 186 (305)
T 3dr2_A 112 SDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D 186 (305)
T ss_dssp ECTT-SC--EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred ECCC-CC--EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence 9986 33 2222211 134678999999988776 432 245778887666654333 3
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeEEe-eccccceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 300 CSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
....+.++|+|+++.|+.+... +.|++|++..+. +.... +..........++++++|.+.++..+ .|.+|
T Consensus 187 -~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~ 263 (305)
T 3dr2_A 187 -LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVF 263 (305)
T ss_dssp -ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEE
T ss_pred -CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEE
Confidence 4567899999999988777655 789999987654 22110 11111122357899999998444444 48999
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
+...
T Consensus 264 ~~~g 267 (305)
T 3dr2_A 264 DSDG 267 (305)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8743
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.12 E-value=4e-08 Score=82.53 Aligned_cols=202 Identities=10% Similarity=-0.000 Sum_probs=135.0
Q ss_pred eeeEEeeccCCceEEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE
Q 014114 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
.++.+..........+.|+ ++.++.+.+.+| .|+.+|+.+++.+..+..... ..-..+++ +++.|
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--------~FgeGit~----~g~~l 99 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--------YFGEGISD----WKDKI 99 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--------CCEEEEEE----ETTEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc--------cceeEEEE----eCCEE
Confidence 3444433333446889998 666666666665 899999999999888765321 11234555 33444
Q ss_pred E-EEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc----ccCcEE
Q 014114 231 V-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIR 305 (430)
Q Consensus 231 ~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~v~ 305 (430)
. ..-.++.+.+||..+.+. +..+.... ....+++++..|+.+..++.|.++|..+.+.+..+... .-..++
T Consensus 100 y~ltw~~~~v~v~D~~t~~~-~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQ-VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCCE-EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCcE-EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 4 444688999999998664 66766532 22334467778887777788999999999988877642 113455
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccc---------cceeEEEeeecCCcceeeecCCCcEEEe
Q 014114 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH---------LNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~g~~~~~~~d~~v~vw 372 (430)
.+.|. +|++.+..-.+..|.+.|..+++.+..+.+.+- ...+...++|+|++..+.......-++|
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 67776 676555555688999999999999999876421 1245799999998877333333333343
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=1.4e-07 Score=85.37 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=145.2
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEe---e--ccC-CceEEEEEcCCCCEEEEecCC------CeEEEEEC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V--CAS-GTIAFSKVDISEKFSLFGGKG------VEVNVWDL 191 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~---~--~~~-~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~ 191 (430)
..++.+..++.|.|+|+...+.. -..+++.. + ..+ ..-..+...|++ +++++..+ |.|.++|.
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~----p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPRE----PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTS----CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred EEEEccCCCCeEEEEECCCCCCC----ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 36677888899999998654321 02223331 1 011 245667888999 66655444 78999999
Q ss_pred CCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-------------------CCCcEEEEECCCCCcceE
Q 014114 192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------------------NDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------------------~dg~i~~wd~~~~~~~~~ 252 (430)
.+.+.+..+....... ..-..+-| +|+++.+++.. ...+|.+||+.++ +.+.
T Consensus 172 ~T~~v~~~~~~~~~~~------~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~ 242 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQ------YLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIH 242 (462)
T ss_dssp TTCCEEEECCSBCTTC------CCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEE
T ss_pred CCCeEEEEEccCCCCc------cccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEee
Confidence 9999998886432110 11234666 78999888874 3689999999985 4466
Q ss_pred EeeecC--CCeEEEEe--eCCCCEEEEEcC------CCCEEEEEccCCeE--EeEE--eccc---------------cCc
Q 014114 253 SFDFRE--TPIKAVAE--EPDSFNIYIGNG------SGDLASVDIRTGKL--LGCF--IGKC---------------SGS 303 (430)
Q Consensus 253 ~~~~~~--~~i~~~~~--s~~~~~l~~~~~------dg~v~iwd~~~~~~--~~~~--~~~~---------------~~~ 303 (430)
.+.... .....+.| +|+++++++++. +++|.+|....++. ...+ .... ...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 665421 23344545 999999888774 56787776654432 1111 1100 134
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEeCCC---CceeeEEeecccc--------c---eeEEEeeecCCcce-eeec
Q 014114 304 IRSIARHPTLPIIASCG-LDSYLRFWDIKT---RQLLSAVFLKQHL--------N---EVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~---~~~~~~~~~~~~~--------~---~~i~~~~~s~~g~~-~~~~ 364 (430)
...|.+|+||++|.++. ..+.|.+||+.. .+.+..+...+.. . .....++++|||++ +++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 78899999999988877 468999999863 4566665443221 0 01378899999998 4444
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=7.4e-09 Score=92.53 Aligned_cols=250 Identities=12% Similarity=0.084 Sum_probs=156.9
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
.|.+++.++.|..|| .+++.+..+.... ..+.++.. . .++.+..++.+ +..++.. ...
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~--------~~~~~~~~-~--------~~g~l~v~t~~--l~~~d~~-g~~- 89 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGE--------IIECRPSI-G--------KDGTIYFGSDK--VYAINPD-GTE- 89 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGG--------EEEECCEE-T--------TTTEECCSSCE--EEEECCC-GGG-
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCC--------CcccceEE-e--------cCCcEEEecCc--EEEECCC-CcE-
Confidence 478888889999999 7888765544311 11122221 1 12355555554 5555531 110
Q ss_pred ccCCcceeeEEeeccCCc-eEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+|....... .....+. +..|++++.++.|..+|.. ++..+...... ..+.++.. .+
T Consensus 90 ---------~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--~~ 146 (330)
T 3hxj_A 90 ---------KWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKK---------AIYATPIV--SE 146 (330)
T ss_dssp ---------GGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CT
T ss_pred ---------EEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC---------ceeeeeEE--cC
Confidence 111111111 1122222 5567778889999999998 77777665432 22445555 44
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEE
Q 014114 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
++. ++.++.++.|..||.. ++. +..+......+.++.+.+++. |++++ +.|..|| .+++.+..+... ...+.
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~-~~~~~ 218 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTE-KWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAG-YWTVT 218 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCS-SCCCS
T ss_pred CCE-EEEEcCCCEEEEECCC-CCE-eEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccC-Cccee
Confidence 555 6667888999999998 553 555555556677777777776 44555 8899999 778777777654 56788
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecC
Q 014114 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 306 ~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~ 374 (430)
++...+++. |..++.++.|..+| .+++.+..+... ...+..+.+.++|.+..++.++.|..++.
T Consensus 219 ~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~---~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 219 RPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTG---KRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp CCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECS---SCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred ceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCC---CCccccceEcCCCeEEEecCCCCEEEECC
Confidence 888888875 55566778888888 466666654322 22234556677888888888888999985
No 239
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.07 E-value=1.1e-07 Score=91.43 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=116.4
Q ss_pred EEEEcCCCCEEEEecC--------------------C----CeEEEEECCCCceeeeecCCCCCCCCccc-CcceeEeEE
Q 014114 167 FSKVDISEKFSLFGGK--------------------G----VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAF 221 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~--------------------d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 221 (430)
.++++|...+++++.. | +.|..+|..+++.++.++........... ...+. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567777777776552 2 68999999999999988653221111100 01111 111
Q ss_pred eeCCCC---CEEEEEeCCCcEEEEECCCCCcceEEeeecC-------------CC-------------------------
Q 014114 222 LSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TP------------------------- 260 (430)
Q Consensus 222 ~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-------------~~------------------------- 260 (430)
. ..++ ..++.++.+|.++++|..+++. +..+.... .+
T Consensus 329 ~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P 406 (582)
T 1flg_A 329 K-AKDGKIVKATAHADRNGFFYVVDRSNGKL-QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP 406 (582)
T ss_dssp E-CSSSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred e-cCCCCEEEEEEEECCCceEEEEECCCCCE-ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence 0 1356 3788899999999999998764 44333221 00
Q ss_pred -------eEEEEeeCCCCEEEEEc---------------------------------CCCCEEEEEccCCeEEeEEeccc
Q 014114 261 -------IKAVAEEPDSFNIYIGN---------------------------------GSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 261 -------i~~~~~s~~~~~l~~~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~ 300 (430)
-..++++|+..++++.. .+|.|..||+.+++.+.+....
T Consensus 407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~- 485 (582)
T 1flg_A 407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH- 485 (582)
T ss_dssp CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence 01345666655555432 2578999999999988777643
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
.++..-.....+.+++.++.|+.++.||.++|+.+..+.+..... ..-+.|..+|+.
T Consensus 486 -~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~--a~P~~y~~~G~q 542 (582)
T 1flg_A 486 -LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV--SPPITWEQDGEQ 542 (582)
T ss_dssp -SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEE
T ss_pred -CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc--cCceEEEECCEE
Confidence 222221122246678889999999999999999999976543321 123566778876
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=1.5e-07 Score=92.38 Aligned_cols=286 Identities=12% Similarity=0.071 Sum_probs=171.1
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCC--CCCCce-EEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ--PEDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
..|++++.++.|..+|..+|+.+..+....+.... .....+ ..+.+ .++.++.++.++.+..+|...
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----------WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----------EBTEEEEECTTSEEEEEETTT
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----------ECCEEEEEcCCCEEEEEECCC
Confidence 45788888999999999999999887652211000 000000 00111 123778888888888888654
Q ss_pred ecccccCCcceeeEEeeccCCc--eEEEEEcC--CCCEEEEecC------CCeEEEEECCCCceeeeecCCCCCCCCc--
Q 014114 143 TKVSAESSCSTVKSWNVCASGT--IAFSKVDI--SEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI-- 210 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~-- 210 (430)
.. .+|....... ...+...| .+..++++.. +|.|+.+|..+|+.++.+..........
T Consensus 137 G~----------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~ 206 (668)
T 1kv9_A 137 GK----------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYE 206 (668)
T ss_dssp CC----------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred CC----------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccc
Confidence 33 1344322110 00011111 2345555543 5899999999999999886421110000
Q ss_pred --------------------ccCcceeEeEEeeCCCCCEEEEEeCCCc-------------------EEEEECCCCCcce
Q 014114 211 --------------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQ-------------------VRLYDTSAQRRPV 251 (430)
Q Consensus 211 --------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~-------------------i~~wd~~~~~~~~ 251 (430)
........+++ +++..+++.++.++. |..+|..+++. +
T Consensus 207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-~ 283 (668)
T 1kv9_A 207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-A 283 (668)
T ss_dssp SHHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-E
T ss_pred ccccccccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-e
Confidence 00011124567 677788888887763 99999999874 5
Q ss_pred EEeee--cC-------CCeEEEEeeCCCC---EEEEEcCCCCEEEEEccCCeEEeEEeccc-----------cCcE----
Q 014114 252 MSFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSI---- 304 (430)
Q Consensus 252 ~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~v---- 304 (430)
..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+....... ..++
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence 55543 22 2333333334665 68899999999999999999885443210 0000
Q ss_pred --------------------EEEEEcCCCCEEEEE------------------------------------eCCCeEEEE
Q 014114 305 --------------------RSIARHPTLPIIASC------------------------------------GLDSYLRFW 328 (430)
Q Consensus 305 --------------------~~i~~s~~~~~l~s~------------------------------------~~d~~v~iw 328 (430)
..++++|+..+++.. ..+|.|..|
T Consensus 364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~ 443 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAW 443 (668)
T ss_dssp TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEE
T ss_pred ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEE
Confidence 125777776655432 134889999
Q ss_pred eCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCCCC
Q 014114 329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~~~ 378 (430)
|+.+++.+........ .....+...+.+ ++++.|+.|+.||.....
T Consensus 444 D~~tG~~~W~~~~~~~----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 444 DPVKQKAAWKVPYPTH----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp ETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eCCCCcEEEEccCCCC----CcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 9999999888544322 122234444555 888999999999987643
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=2e-08 Score=94.18 Aligned_cols=252 Identities=12% Similarity=0.049 Sum_probs=151.1
Q ss_pred EEecc-CCCCCCceEEEEc-cCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeec-cCccccccCCceEEEEc-
Q 014114 55 LAASI-DDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCT- 130 (430)
Q Consensus 55 ~~~~~-~~~p~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~- 130 (430)
.++++ ++.+||++|.+.. .+++|.+.|+.+.++...+.. +......++.+.. . +..++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p-------~~~~v~~~~~ 155 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWP-------RSNYVFCNGE 155 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSS-------BCSEEEEEEC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecC-------CCcEEEEecc
Confidence 44554 6778899888755 456799999999998886643 2223455566532 1 123555553
Q ss_pred -----------------cCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC---------
Q 014114 131 -----------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--------- 184 (430)
Q Consensus 131 -----------------~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------- 184 (430)
.++.+.+.|.+. .-..|.+.-++....++++|+++++++.+.+.
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~ 225 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 225 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred cccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence 233455555432 11234444334556778899999888877543
Q ss_pred ------eEEEEECCC-------Cce-----eeeecCCC--CCCC--CcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEE
Q 014114 185 ------EVNVWDLDK-------CEK-----IWTAKPPP--KNSL--GIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRL 241 (430)
Q Consensus 185 ------~v~iwd~~~-------~~~-----~~~~~~~~--~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~ 241 (430)
.|.+.|+.. ++. +..+.... ...+ .+.......++.+ +|||+++++++ .+.+|.+
T Consensus 226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~--sPDGk~v~V~~~~s~~VsV 303 (595)
T 1fwx_A 226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNM--APDKKHLCVAGKLSPTVTV 303 (595)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEE--CTTSSEEEEECTTSSBEEE
T ss_pred cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEE--cCCCCEEEEeCCCCCeEEE
Confidence 244444321 100 11111111 0000 0111234567888 89999877765 6789999
Q ss_pred EECCCCC-----------cceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC----------CeEEeEEeccc
Q 014114 242 YDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKLLGCFIGKC 300 (430)
Q Consensus 242 wd~~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~ 300 (430)
+|+.+.+ ..+..... ......++|+|+|...++...|+.|.+||+.+ .+.+.++..|
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~- 381 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH- 381 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-
T ss_pred EECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-
Confidence 9998632 11223322 24678899999995555667899999999987 5677777765
Q ss_pred cCcE-----EEEEEcCCCCEEEEEeC---CCe----------EEEEeCCCCc
Q 014114 301 SGSI-----RSIARHPTLPIIASCGL---DSY----------LRFWDIKTRQ 334 (430)
Q Consensus 301 ~~~v-----~~i~~s~~~~~l~s~~~---d~~----------v~iwd~~~~~ 334 (430)
-.+- .++.++|||++|+++.. |+. -.++|+..++
T Consensus 382 yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 382 YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 3321 22356899999998863 442 2789996555
No 242
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=3.6e-08 Score=97.45 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=125.4
Q ss_pred EEEEEcCCCCEEEEecCCC-------------eEEEEECCCCce--eeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE
Q 014114 166 AFSKVDISEKFSLFGGKGV-------------EVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~dg-------------~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
..++|+ +++.|+.+..+. .|++|++.++.. ...+..... +..++..+.| +|++++|
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~------~~~~~~~~~~--SpDg~~l 248 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA------QHHRYVGATV--TEDDRFL 248 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG------GCCSEEEEEE--CTTSCEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC------CCeEEEEEEE--cCCCCEE
Confidence 467899 999888887763 399999987642 222222100 0134667888 8999988
Q ss_pred EEEeC----CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CC---CCEEEEEccCCeE--EeEEeccc
Q 014114 231 VAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GS---GDLASVDIRTGKL--LGCFIGKC 300 (430)
Q Consensus 231 ~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d---g~v~iwd~~~~~~--~~~~~~~~ 300 (430)
+.... ...|+++|+.++......+..+....... |++++..|+..+ .+ +.|..+|+.++.. ...+..+
T Consensus 249 ~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~- 326 (693)
T 3iuj_A 249 LISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE- 326 (693)
T ss_dssp EEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-
T ss_pred EEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-
Confidence 65442 34899999987643456666666666555 566666555443 33 5688999987654 3455555
Q ss_pred cCcEEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC----CCcEEEe
Q 014114 301 SGSIRSIARHPTLPIIASCGL-DS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD----APMLEIQ 372 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~----d~~v~vw 372 (430)
...+. .|++++..|+.... ++ .|++||+.. .....+.++. ...+..+.+++++.. +.... .+.+..|
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG-KRVREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS-CEEEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC-CeeEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence 44444 88899988776664 44 689999874 4445443332 233577888888876 33322 3788888
Q ss_pred cCCC
Q 014114 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
+...
T Consensus 402 d~~~ 405 (693)
T 3iuj_A 402 EPKS 405 (693)
T ss_dssp CTTT
T ss_pred ECCC
Confidence 8754
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.03 E-value=1.8e-07 Score=78.53 Aligned_cols=190 Identities=11% Similarity=-0.005 Sum_probs=131.9
Q ss_pred eeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE
Q 014114 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 232 (430)
.++.+..........+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ... . ..-..+++ . .+.+.+.
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~-------~FgeGit~--~-g~~Ly~l 111 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-N-------IFAEGLAS--D-GERLYQL 111 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T-------CCEEEEEE--C-SSCEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C-------cceeEEEE--e-CCEEEEE
Confidence 3344433334456788887 4667777888899999999999988877 321 1 11234555 2 2344445
Q ss_pred EeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc----cCcEEEEE
Q 014114 233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIA 308 (430)
Q Consensus 233 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~i~ 308 (430)
.-.++.+.+||..+.+ .+..+..... -..++ ++++.|+.+..++.|.++|..+.+.+..+.-.. -..++.+.
T Consensus 112 tw~~~~v~V~D~~Tl~-~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQ-RERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTE-EEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCc-EEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 5578899999999865 4666665322 23333 567888888778999999999999888776421 12456777
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccc----------cceeEEEeeecCCcce
Q 014114 309 RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH----------LNEVVFDSAFADKEVA 360 (430)
Q Consensus 309 ~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~i~~~~~s~~g~~ 360 (430)
|. +|++.+..-.+..|.+.|..+++.+..+.+.+- ...+...++|+|++..
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 76 776555554688999999999999999876421 2246799999998766
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.03 E-value=4.4e-07 Score=75.56 Aligned_cols=191 Identities=16% Similarity=0.155 Sum_probs=131.0
Q ss_pred eeeEEeeccCCceEEEEEcCCCCEEEEecCC--CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE
Q 014114 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
.++.+-.........+.|++ +.++.+.+.. ..|+.+|+.+++.+..+..... ..-..+++. .+...
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~~---~~~ly 78 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVAW---RDRLI 78 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEEE---TTEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEEe---CCEEE
Confidence 34444333345577899986 5555566654 4899999999999888765421 112344552 34445
Q ss_pred EEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccc----cCcEEE
Q 014114 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRS 306 (430)
Q Consensus 231 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~v~~ 306 (430)
+..-.++.+.+||..+.+ .+..+...... ..+ .+++..|+.+..++.|.++|..+.+.+..+.-.. -..++.
T Consensus 79 ~ltw~~~~v~v~D~~tl~-~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLT-PRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTE-EEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCc-EEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 555578999999999865 46676653322 333 4577777777778899999999999888776421 134566
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeecc----------ccceeEEEeeecCCcce
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ----------HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~g~~ 360 (430)
+.|. +|+.++..-.+..|.+.|.++++.+..+.+.+ ....+...++|+|++..
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 7765 66655555467899999999999999987553 12346799999998776
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=2.2e-08 Score=90.03 Aligned_cols=251 Identities=8% Similarity=-0.107 Sum_probs=155.4
Q ss_pred eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEc----------cCCeeEEEEeeeecc
Q 014114 76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT----------TKGKASMRSIEVTKV 145 (430)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~i~v~~~~~~~~ 145 (430)
.|.++|..+++.+..+..-. .+ .+.+.+... .++.+. .++.+.+||+....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--------~P--~i~~spDg~--------~lyVan~~~~r~~~G~~~~~VsviD~~T~~- 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--------LS--LAVAGHSGS--------DFALASTSFARSAKGKRTDYVEVFDPVTFL- 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--------TC--EEEECTTSS--------CEEEEEEEETTTTSSSEEEEEEEECTTTCC-
T ss_pred eEEEEECCCCeEEEEEeCCC--------CC--ceEECCCCC--------EEEEEcccccccccCCCCCEEEEEECCCCC-
Confidence 88899999999999887621 23 466655333 555554 46889999976543
Q ss_pred cccCCcceeeEEeec------cCCceEEEEEcCCCCEEEEecC--CCeEEE--EECCCCceeeeecCCCCCCCCcccCcc
Q 014114 146 SAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNV--WDLDKCEKIWTAKPPPKNSLGIFTPTW 215 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (430)
.+....+. .......++++|++++++++.. ++.|.+ +|+.+ +..+....
T Consensus 108 -------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----------- 166 (368)
T 1mda_H 108 -------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----------- 166 (368)
T ss_dssp -------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-----------
T ss_pred -------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-----------
Confidence 23333322 1134568899999999998864 467888 99877 34443211
Q ss_pred eeEeEEeeCCCCCEEEEEeCCCcEEEEECCC----CCcceE----EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEc
Q 014114 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA----QRRPVM----SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~ 287 (430)
...+.. . ....+++.+.|+.+.+.|+.+ ..+... .+.....+. . .+++..++..+. +.|.+.|+
T Consensus 167 ~~~~~p--~-g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~ 238 (368)
T 1mda_H 167 CFHIHP--G-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDI 238 (368)
T ss_dssp CCCCEE--E-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEEC
T ss_pred ceEEcc--C-CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEEC
Confidence 001111 1 223445566788888888875 121111 111122343 3 566666666666 99999998
Q ss_pred cCC--eEEeEEecc---------ccCcEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeEEeeccccce
Q 014114 288 RTG--KLLGCFIGK---------CSGSIRSIARHPTLPIIASCGL---------DSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 288 ~~~--~~~~~~~~~---------~~~~v~~i~~s~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
... +.+..+... .......++|+|+++.++.+.. ++.+.++|+.+++.+..+.+..
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---- 314 (368)
T 1mda_H 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---- 314 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE----
T ss_pred CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC----
Confidence 653 233332210 0111122689999988776543 2356699999999999865433
Q ss_pred eEEEeeecCCcce--eeec-CCCcEEEecCCCCC
Q 014114 348 VVFDSAFADKEVA--NAAA-DAPMLEIQNGNDTQ 378 (430)
Q Consensus 348 ~i~~~~~s~~g~~--~~~~-~d~~v~vw~~~~~~ 378 (430)
....++|+|||+. ++.. .++.|.++|.....
T Consensus 315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2588999999985 5555 58999999987643
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.00 E-value=4.4e-06 Score=72.03 Aligned_cols=252 Identities=7% Similarity=-0.060 Sum_probs=145.0
Q ss_pred CceEEEEccCCeEEEeccCCCcee-----eeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEE
Q 014114 65 DPLLAVARKNGLTDILNPLNGDLR-----VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS 139 (430)
Q Consensus 65 g~~l~~g~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~ 139 (430)
|++|+.+.. +.|+.+++...... ..+... .....++.+-.... ..+++....+.|.+++
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~--------~~~~~gi~~d~~~~-------~ly~~d~~~~~I~~~~ 64 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP--------AKVIIGLAFDCVDK-------VVYWTDISEPSIGRAS 64 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE--------EEEEEEEEEETTTT-------EEEEEETTTTEEEEEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCC--------CCcEEEEEEecCCC-------EEEEEECCCCEEEEEe
Confidence 345666654 57888888544321 111110 01334555543222 2555566677888887
Q ss_pred eeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeE
Q 014114 140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
+.... +..+-.........+++++++..|+ +-...+.|.++++............ ......
T Consensus 65 ~~g~~---------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~P~~ 126 (267)
T 1npe_A 65 LHGGE---------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG---------LVNPRG 126 (267)
T ss_dssp SSSCC---------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEE
T ss_pred cCCCC---------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC---------CCCccE
Confidence 64321 1111111124678999998655555 4456788999998643322222111 134678
Q ss_pred eEEeeCCCCCEEEEEeC---CCcEEEEECCCCCcceEEee-ecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCeEE
Q 014114 219 AAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLL 293 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~ 293 (430)
+++ +|++..|+.+.. .+.|..+++.... ...+. ..-.....++++|++..|+.+ ...+.|.++|+......
T Consensus 127 i~v--d~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 202 (267)
T 1npe_A 127 IVT--DPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR 202 (267)
T ss_dssp EEE--ETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred EEE--eeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE
Confidence 888 776555555543 3688888886532 22222 223457889999987666555 45678999999754433
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc
Q 014114 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 359 (430)
..+.. ......++.. .+.++++....+.|.++|..+++.+..+... . ....+.+++.|++.
T Consensus 203 ~~~~~--~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g-~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 203 KVLEG--LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH-K-QTRLYGITIALSQC 263 (267)
T ss_dssp EEEEC--CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS-S-CCCCCCEEEECSCC
T ss_pred EEecC--CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccc-c-ccccceeeecCccC
Confidence 33333 3345677764 3334444446689999999999988885322 1 11236778888764
No 247
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.97 E-value=2.5e-07 Score=83.19 Aligned_cols=253 Identities=6% Similarity=-0.058 Sum_probs=145.5
Q ss_pred EEeccCCCCCCceEEEEc--cCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-
Q 014114 55 LAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT- 131 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (430)
..+.+ +|+|+++++.. .++.++||.+.+++. ..+..... ....+...+.++.+-+... .+++-..
T Consensus 20 ~~va~--~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~-~~~~~~~~p~gv~~d~~g~--------L~v~D~g~ 87 (343)
T 2qe8_A 20 GNITL--TPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG-NAIITFDTVLGIKSDGNGI--------VWMLDNGN 87 (343)
T ss_dssp EEEEE--CTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS-SCCCCCSCEEEEEECSSSE--------EEEEECHH
T ss_pred ceEEE--CCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc-CcccceeEeeEEEEcCCCc--------EEEEcCCC
Confidence 33444 56777777753 234356666544542 22211100 0112234566666643221 3333322
Q ss_pred ----CCeeEEEEeeeecccccCCcceeeEEeec-----cCCceEEEEEcCCCCEE-EEec---CCCeEEEEECCCCceee
Q 014114 132 ----KGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFS-LFGG---KGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 132 ----~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~---~dg~v~iwd~~~~~~~~ 198 (430)
++.+.+|++.... .++.+... ....+..+++++++..+ ++.. .++.|.+||+.+++...
T Consensus 88 ~~~~~~~i~~~d~~tg~--------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQ--------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp HHTSCCEEEEEETTTTE--------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred CcCCCCeEEEEECCCCe--------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 4678888865321 24444432 12346889999865454 4444 57899999999887766
Q ss_pred eecCCCCCC---CCcc-----------------cCcceeEeEEeeCCCCCEEEEEeCCC-cEEEEECC---CCC----cc
Q 014114 199 TAKPPPKNS---LGIF-----------------TPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTS---AQR----RP 250 (430)
Q Consensus 199 ~~~~~~~~~---~~~~-----------------~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~wd~~---~~~----~~ 250 (430)
.+..+.... .... -...+..++| +|+++.|+++...+ .|..++.. .+. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~--s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL--DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE--CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe--ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 554321100 0000 0123578899 89999888877665 55555532 110 00
Q ss_pred e--EEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 014114 251 V--MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 251 ~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iw 328 (430)
. ....++......++++++|+++++...++.|.+||..+++............+.+++|.+++.++++.+..+.+-+|
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 0 01123344567799999999999888899999999866765433332224568999999999888887765555444
Q ss_pred e
Q 014114 329 D 329 (430)
Q Consensus 329 d 329 (430)
.
T Consensus 318 ~ 318 (343)
T 2qe8_A 318 N 318 (343)
T ss_dssp B
T ss_pred c
Confidence 3
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=1.9e-06 Score=82.74 Aligned_cols=284 Identities=14% Similarity=0.082 Sum_probs=165.5
Q ss_pred eEEEEcc-CCeEEEecc-CCCceeeeeeecCCCCCC--CCCCce-EEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 67 LLAVARK-NGLTDILNP-LNGDLRVAISNAGDSGAQ--PEDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 67 ~l~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~--~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
.|++++. ++.|.-+|. .+|+.+..+......... .....+ ....+ .++.++.++.++.+..+|..
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~v~~~dg~l~alD~~ 133 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----------GAGQIVKKQANGHLLALDAK 133 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----------ETTEEEEECTTSEEEEEETT
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----------ECCEEEEEeCCCEEEEEECC
Confidence 4777777 899999999 899998887542110000 000000 00111 12477788888888888765
Q ss_pred eecccccCCcceeeEEeeccCCce--EEEEEcC--CCCEEEEecC------CCeEEEEECCCCceeeeecCCCCCCC---
Q 014114 142 VTKVSAESSCSTVKSWNVCASGTI--AFSKVDI--SEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSL--- 208 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i--~~~~~~~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~--- 208 (430)
... .+|.......- ..+..+| .+..+++++. ++.|+.+|..+++.++.+........
T Consensus 134 tG~----------~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 203 (571)
T 2ad6_A 134 TGK----------INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRL 203 (571)
T ss_dssp TCC----------EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTB
T ss_pred CCC----------EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccccc
Confidence 432 13443222100 0011111 1345555554 78999999999999988765321100
Q ss_pred -----------------------Cc---ccCcceeEeEEeeCCCCCEEEEEeCC----------------CcEEEEECCC
Q 014114 209 -----------------------GI---FTPTWFTSAAFLSIDDHRKFVAGTND----------------HQVRLYDTSA 246 (430)
Q Consensus 209 -----------------------~~---~~~~~v~~~~~~~~~~~~~l~~~~~d----------------g~i~~wd~~~ 246 (430)
.. ........+++ +++...++.+..+ +.|..+|..+
T Consensus 204 ~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~--d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 204 AKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAY--DPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp CTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEE--ETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred CcccccccccccccccccccCcccceecCCCCeeeeEEE--cCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 00 00000023455 5566667666532 3599999999
Q ss_pred CCcceEEeeec--C--------CCeEEEEeeCCCC---EEEEEcCCCCEEEEEccCCeEEeEEeccc------------c
Q 014114 247 QRRPVMSFDFR--E--------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKC------------S 301 (430)
Q Consensus 247 ~~~~~~~~~~~--~--------~~i~~~~~s~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------~ 301 (430)
++. +..++.. . .++. +...++|+ .++.++.+|.++++|..+++.+..+.... .
T Consensus 282 G~~-~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g 359 (571)
T 2ad6_A 282 GMA-KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTG 359 (571)
T ss_dssp CCE-EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTC
T ss_pred CcE-EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCC
Confidence 774 5555431 1 1221 22234674 57788899999999999999887765321 0
Q ss_pred CcE--------------------------EEEEEcCCCCEEEEEe-----------------------------------
Q 014114 302 GSI--------------------------RSIARHPTLPIIASCG----------------------------------- 320 (430)
Q Consensus 302 ~~v--------------------------~~i~~s~~~~~l~s~~----------------------------------- 320 (430)
.++ ..++++|+..+|+...
T Consensus 360 ~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 439 (571)
T 2ad6_A 360 TPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPT 439 (571)
T ss_dssp SEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTT
T ss_pred ceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccC
Confidence 111 2357888777766553
Q ss_pred --CCCeEEEEeCCCCceeeEEeeccccceeEEEeeec-CCcceeeecCCCcEEEecCCCCC
Q 014114 321 --LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 321 --~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
.++.|..||+.+++.+..+..... +....+. .++.++.++.|+.|+.||.....
T Consensus 440 ~~~~g~l~a~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 440 KKEMGQIRAFDLTTGKAKWTKWEKFA----AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp SCCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCeEEEEECCCCCEEEEecCCCC----ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 357899999999999888543322 1222223 34555778899999999987644
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.90 E-value=5.7e-05 Score=75.91 Aligned_cols=317 Identities=9% Similarity=0.017 Sum_probs=181.7
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCC--------CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCc
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGD--------PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
..+..|..++-+.+|+..++ ....+.. .... +.++.. .++|. |..|+.+ -|.+||..+++
T Consensus 226 g~lwigt~~~Gl~~~~~~~~------~~~~~~~~~~~~~~l~~~~--i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~ 293 (795)
T 4a2l_A 226 TRIWVATEGAGLFLINPKTK------EIKNYLHSPSNPKSISSNY--IRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDS 293 (795)
T ss_dssp TEEEEEEBSSCEEEEETTTT------EEEEECCCTTCTTSCSCSB--EEEEEE--CTTSC-EEEEESS-CEEEEETTTTE
T ss_pred CCEEEEECCCCeEEEeCCCC------eEEEeecCCCCccccCCCe--EEEEEE--cCCCC-EEEEeCC-hhheEcCCCCe
Confidence 34555654444777887653 1222221 1223 444444 33444 5666665 48899986665
Q ss_pred eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee------c
Q 014114 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV------C 160 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~------~ 160 (430)
........ .....-....|.++..-. .+.+..++.++-+..++.... .+..+.. -
T Consensus 294 ~~~~~~~~-~~~~~l~~~~i~~i~~D~---------~g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~~~~l 354 (795)
T 4a2l_A 294 FASYSSNP-VENGSLSQRSVRSIFMDS---------QGGMWLGTYFGGLNYYHPIRN---------RFKNIRNIPYKNSL 354 (795)
T ss_dssp EEEECCCT-TSTTSCSSSCEEEEEECT---------TSCEEEEESSSCEEEECGGGG---------SSEEECCCTTSSSC
T ss_pred EEEEecCC-CCCCCCCCCcEEEEEEeC---------CcCEEEEECCCCeEEeCCCcc---------cceEEcCCCCCCCC
Confidence 43222111 011111224565554322 236777887777877764321 1111111 1
Q ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
....|.++...+++++. +|+.++-|..|+..++............... .....|.++.. .++++.|.+|+.++-|.
T Consensus 355 ~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~~i~~--d~~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARG-IGSNNIKAVYV--DEKKSLVYIGTHAGGLS 430 (795)
T ss_dssp SCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------C-CSCSCEEEEEE--ETTTTEEEEEETTTEEE
T ss_pred CCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccC-CCCccEEEEEE--cCCCCEEEEEeCcCcee
Confidence 23568999988877654 4777777999998876543322111000000 01255888887 66777577788877899
Q ss_pred EEECCCCCcceEEee-----ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec-----cccCcEEEEEEc
Q 014114 241 LYDTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-----KCSGSIRSIARH 310 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~v~~i~~s 310 (430)
+||..+++ +..+. .....|.++...++|++.+ |+. +.|.+||..+++....... .....|.++...
T Consensus 431 ~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 431 ILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred EEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 99988754 33332 2345789999888886544 445 4589999987765432211 113579999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeEEee----ccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 311 PTLPIIASCGLDSYLRFWDIKTRQLLSAVFL----KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 311 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
++|.+.+... +-|..||..+++. .+.. .+-....|.++...++|.+..++.. -|..|+..
T Consensus 507 ~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 507 SHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK 570 (795)
T ss_dssp TTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred CCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence 9997665544 4488899877665 2211 1122335789999999998444444 56667654
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.88 E-value=4.8e-07 Score=81.99 Aligned_cols=198 Identities=10% Similarity=0.066 Sum_probs=127.7
Q ss_pred CCCCEEEE-ecCCCeEEEEECCCC----ceeeeecCCCCC-CCCcccCcceeEeEEeeCCCCCEEEEEeCC------CcE
Q 014114 172 ISEKFSLF-GGKGVEVNVWDLDKC----EKIWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQV 239 (430)
Q Consensus 172 ~~~~~l~~-~~~dg~v~iwd~~~~----~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i 239 (430)
++.++|++ +..++.|+++|+.+. +....++..... ..+. .....+.. .|++ +++++..+ +.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~---s~Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY---SRLHTVHC--GPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE---EEEEEEEE--CSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC---CcccceeE--CCCe-EEEEcCCCcCCCCCCeE
Confidence 56666654 566889999999754 444444210000 0000 12333444 7888 66666555 789
Q ss_pred EEEECCCCCcceEEeeecCC---CeEEEEeeCCCCEEEEEc-------------------CCCCEEEEEccCCeEEeEEe
Q 014114 240 RLYDTSAQRRPVMSFDFRET---PIKAVAEEPDSFNIYIGN-------------------GSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~-------------------~dg~v~iwd~~~~~~~~~~~ 297 (430)
.++|..+.+ .+..+..... --..+-|+|+++.+++.. ...+|.+||+.+++.+.++.
T Consensus 167 ~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 167 LMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCe-EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 999999866 4666653222 234578899999888884 36789999999998888887
Q ss_pred cc-ccCcEEEEEE--cCCCCEEEEEe------CCCeEEEEeCCCCcee--eEEeeccc---------------cceeEEE
Q 014114 298 GK-CSGSIRSIAR--HPTLPIIASCG------LDSYLRFWDIKTRQLL--SAVFLKQH---------------LNEVVFD 351 (430)
Q Consensus 298 ~~-~~~~v~~i~~--s~~~~~l~s~~------~d~~v~iwd~~~~~~~--~~~~~~~~---------------~~~~i~~ 351 (430)
.. .......|.| +|++++++.++ .+++|.+|....++.. +.+.+... .......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 52 1234556656 99999877766 5668888766554321 11111110 0133578
Q ss_pred eeecCCcce--eeecCCCcEEEecCCC
Q 014114 352 SAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 352 ~~~s~~g~~--~~~~~d~~v~vw~~~~ 376 (430)
+.+++||++ ++.-..+.|.+|+...
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 899999999 5666688999999863
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=4.9e-05 Score=76.44 Aligned_cols=311 Identities=10% Similarity=0.042 Sum_probs=180.2
Q ss_pred CcceEeecCCCcEEEEEecCccCCcchhheecCC--------CCcceEEEEeccCCCCCCceEEEEccCCeEEEeccCCC
Q 014114 14 PLRALTFDSLGLIKVIEARGEDGGVPKVVERWGD--------PHSSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
..++..|..+| |.+|+..++ ....+.. .... +.++.. .++|. |..|+.++-|..|+..++
T Consensus 273 ~g~lWigt~~G-l~~~~~~~~------~~~~~~~~~~~~~~l~~~~--i~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 273 QNRLWIGTFND-LNIYHEGTD------SFASYSSNPVENGSLSQRS--VRSIFM--DSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp TSCEEEEESSC-EEEEETTTT------EEEEECCCTTSTTSCSSSC--EEEEEE--CTTSC-EEEEESSSCEEEECGGGG
T ss_pred CCCEEEEeCCh-hheEcCCCC------eEEEEecCCCCCCCCCCCc--EEEEEE--eCCcC-EEEEECCCCeEEeCCCcc
Confidence 34556666554 777777653 1222211 1233 445554 33444 777888788999987655
Q ss_pred ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee------
Q 014114 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV------ 159 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~------ 159 (430)
+.. .+... +....-....|.++..-. .+.+..++.++-+..|+.... .+..+..
T Consensus 341 ~~~-~~~~~-~~~~~l~~~~V~~i~~d~---------~g~lWiGt~~~Gl~~~~~~~~---------~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 341 RFK-NIRNI-PYKNSLSDNVVSCIVEDK---------DKNLWIGTNDGGLNLYNPITQ---------RFTSYTLQEDESA 400 (795)
T ss_dssp SSE-EECCC-TTSSSCSCSSEEEEEECT---------TSCEEEEESSSCEEEECTTTC---------CEEEECCC-----
T ss_pred cce-EEcCC-CCCCCCCCCeeEEEEECC---------CCCEEEEECCCCeEEEcCCCC---------cEEEEecCCCCcc
Confidence 432 22111 101111224565554322 236777888877888775321 1222211
Q ss_pred --ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC
Q 014114 160 --CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 160 --~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 237 (430)
-....|.++...++++.|.+|+.++-|.+||..+++....... ... .....|.++.. .+++.+.+ |+. +
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-~~~----l~~~~v~~i~~--d~~g~lwi-gt~-~ 471 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-NSQ----LVNENVYAILP--DGEGNLWL-GTL-S 471 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-TSC----CSCSCEEEEEE--CSSSCEEE-EES-S
T ss_pred cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-CCC----cCCCeeEEEEE--CCCCCEEE-Eec-C
Confidence 1135688999888888566688777799999988765432211 110 11256888887 66666544 444 4
Q ss_pred cEEEEECCCCCcceEEeee-------cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe------ccccCcE
Q 014114 238 QVRLYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSI 304 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~~v 304 (430)
-|.+||..+++ ...+.. ....|.++...++|++.+ |+. +.|..||..+++. .+. +.....|
T Consensus 472 Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i 545 (795)
T 4a2l_A 472 ALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFT 545 (795)
T ss_dssp CEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCE
T ss_pred ceeEEeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCee
Confidence 58889987643 222221 235789999988886555 444 5589999887765 332 1124579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEe-eccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
.+|...++|.+.++.. . -|..||..+++... +. ..+-....|.++...++|.+..++.. -|..|+..
T Consensus 546 ~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t~~-Gl~~~~~~ 613 (795)
T 4a2l_A 546 NCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLSTNR-GISCFNPE 613 (795)
T ss_dssp EEEEECTTSCEEEEES-S-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEETT-EEEEEETT
T ss_pred EEEEECCCCCEEEEeC-C-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEcCC-ceEEEcCC
Confidence 9999999998655443 4 48889987665432 21 11222334788999999998434343 45555543
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=6.9e-06 Score=78.92 Aligned_cols=288 Identities=12% Similarity=0.094 Sum_probs=164.1
Q ss_pred eEEEEcc-CCeEEEecc-CCCceeeeeeecCCCCCCC--CCCc-eEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 67 LLAVARK-NGLTDILNP-LNGDLRVAISNAGDSGAQP--EDDG-IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 67 ~l~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
.|++++. ++.|.-+|. .+|+.+..+.........+ ..+. ...+.+++... .....++.++.++.+..+|..
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g----~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDG----KTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCS----SSCCEEEEECTTSEEEEEETT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCC----cceeEEEEEcCCCEEEEEECC
Confidence 4777777 899999999 8999988876522110000 0000 00112211000 001137788888888777764
Q ss_pred eecccccCCcceeeEEeeccCC-----ceEE-EEEcCCCCEEEEec------CCCeEEEEECCCCceeeeecCCCCCCC-
Q 014114 142 VTKVSAESSCSTVKSWNVCASG-----TIAF-SKVDISEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKNSL- 208 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~-----~i~~-~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~- 208 (430)
... .+|...... .+.+ -.+. ++ .+++++ .++.|+.+|..+++.++.+........
T Consensus 140 TG~----------~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 140 TGE----------TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL 207 (599)
T ss_dssp TCC----------EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCC----------EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence 332 134432221 1111 0111 33 555555 379999999999999988765432100
Q ss_pred -------------------------Ccc---cCcceeEeEEeeCCCCCEEEEEeCC----------------CcEEEEEC
Q 014114 209 -------------------------GIF---TPTWFTSAAFLSIDDHRKFVAGTND----------------HQVRLYDT 244 (430)
Q Consensus 209 -------------------------~~~---~~~~v~~~~~~~~~~~~~l~~~~~d----------------g~i~~wd~ 244 (430)
..+ ....-...++ .+...+++.+..+ +.|..+|.
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~--d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~ 285 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAY--DPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA 285 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEE--ETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeE--eCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC
Confidence 000 0000013455 5677777777665 37999999
Q ss_pred CCCCcceEEeeecC----------CCeEEEEee-CCC---CEEEEEcCCCCEEEEEccCCeEEeEEeccc----------
Q 014114 245 SAQRRPVMSFDFRE----------TPIKAVAEE-PDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC---------- 300 (430)
Q Consensus 245 ~~~~~~~~~~~~~~----------~~i~~~~~s-~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------- 300 (430)
.+++. +..++... .++. +... .+| ..++.++.+|.+.++|.++++.+.......
T Consensus 286 ~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 286 DTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp TTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred CCCce-eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 99774 55554321 1121 2222 467 467778899999999999999887665210
Q ss_pred --cCcE--------------------------EEEEEcCCCCEEEEEe--------------------------------
Q 014114 301 --SGSI--------------------------RSIARHPTLPIIASCG-------------------------------- 320 (430)
Q Consensus 301 --~~~v--------------------------~~i~~s~~~~~l~s~~-------------------------------- 320 (430)
..++ ..++++|+..++++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0111 2356677665554421
Q ss_pred -------CCCeEEEEeCCCCceeeEEeeccccceeEEEeeec-CCcceeeecCCCcEEEecCCCCC
Q 014114 321 -------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 321 -------~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
.+|.|..||+.+++.+........ ...-... ..|.++.++.|+.|+.||..+..
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCCC----ccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 347899999999999888543221 1111122 34444778899999999987644
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=1.4e-05 Score=76.88 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=163.0
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCce-EEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 145 (430)
.|++++.++.|.-+|..+|+.+..+....+....+..+.+ ..+.+ .++.++.++.++.+..+|......
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----------~~~~v~~~t~dg~l~AlD~~TG~~ 139 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----------YGDKVFFGTLDASVVALNKNTGKV 139 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----------ETTEEEEEETTTEEEEEESSSCCE
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----------ECCEEEEEeCCCEEEEEECCCCCE
Confidence 3666666455999999999999888763321110000000 01111 123677788888888877654331
Q ss_pred cccCCcceeeEEeeccCC-----ceE---EEEEc-CCCC-EEEEec------CCCeEEEEECCCCceeeeecCCCCCC--
Q 014114 146 SAESSCSTVKSWNVCASG-----TIA---FSKVD-ISEK-FSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKNS-- 207 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~-----~i~---~~~~~-~~~~-~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~-- 207 (430)
+|...... .+. .+.-. .+++ .+++++ .++.|+.+|..+++.++.........
T Consensus 140 ----------~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p 209 (582)
T 1flg_A 140 ----------VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGR 209 (582)
T ss_dssp ----------EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEE
T ss_pred ----------EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccc
Confidence 24332211 111 11101 1222 566665 37899999999999998765421000
Q ss_pred -------------CC--------------cc---cCcceeEeEEeeCCCCCEEEEEeC--------------------C-
Q 014114 208 -------------LG--------------IF---TPTWFTSAAFLSIDDHRKFVAGTN--------------------D- 236 (430)
Q Consensus 208 -------------~~--------------~~---~~~~v~~~~~~~~~~~~~l~~~~~--------------------d- 236 (430)
.. .. ....-..+++ +|+..+++.+.. |
T Consensus 210 ~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~--d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~ 287 (582)
T 1flg_A 210 LNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASF--DAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDS 287 (582)
T ss_dssp ETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEE--ETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCC
T ss_pred ccCcccccccccccccCCCccccccccccccccCCccccCCceE--cCCCCEEEEeCCCCCcccCcccccCCCcccccCC
Confidence 00 00 0000123556 566777776663 2
Q ss_pred ---CcEEEEECCCCCcceEEeee--cC--------CCeEEEEee-CCCC---EEEEEcCCCCEEEEEccCCeEEeEEecc
Q 014114 237 ---HQVRLYDTSAQRRPVMSFDF--RE--------TPIKAVAEE-PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 237 ---g~i~~wd~~~~~~~~~~~~~--~~--------~~i~~~~~s-~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 299 (430)
+.|..+|..+++. +..++. |. .++. +... .+|+ .++.++.+|.++++|..+++.+..+...
T Consensus 288 ~~~~~v~AlD~~TG~~-~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 288 LYTSGQVGVDPSSGEV-KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp TTCSEEEEECTTTCCE-EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred cccceEEEEeCCCCCE-EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 5899999999874 555543 21 1221 1221 4674 7888999999999999999988766543
Q ss_pred cc------------CcE--------------------------------EEEEEcCCCCEEEEEe---------------
Q 014114 300 CS------------GSI--------------------------------RSIARHPTLPIIASCG--------------- 320 (430)
Q Consensus 300 ~~------------~~v--------------------------------~~i~~s~~~~~l~s~~--------------- 320 (430)
.. .++ ..++++|+..++++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 10 000 1346666655554432
Q ss_pred ------------------CCCeEEEEeCCCCceeeEEeeccccceeEEEeeec-CCcceeeecCCCcEEEecCCCCC
Q 014114 321 ------------------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 321 ------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~~~~~~d~~v~vw~~~~~~ 378 (430)
.+|.|..||+.+++.+......... ...... .+|.++.++.|+.|+.||..+.+
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~----~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL----WAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC----CSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC----cccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 2688999999999998875433221 111122 34445778999999999987644
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=2.9e-05 Score=65.93 Aligned_cols=178 Identities=11% Similarity=-0.045 Sum_probs=117.9
Q ss_pred CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 132 ~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
++.+.+.|+.... .+....+........+++. .+...++.-.++.+.++|..+.+.+.++.....
T Consensus 43 ~s~v~~iD~~tg~--------v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~------ 107 (266)
T 2iwa_A 43 RSSVRQVALQTGK--------VENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK------ 107 (266)
T ss_dssp TCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS------
T ss_pred CCEEEEEECCCCC--------EEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC------
Confidence 5778888876443 2333333222233345554 233444455688999999999999888764311
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecC-----CCeEEEEeeCCCCEEEEEcCCCCEEEEE
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-----TPIKAVAEEPDSFNIYIGNGSGDLASVD 286 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~v~iwd 286 (430)
. -..++ +++..++++..++.|.++|..+.+. +..+.-.. ..+..+.|. +++..+....++.|.+.|
T Consensus 108 --~-g~glt----~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 108 --D-GWGLA----TDGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp --S-CCEEE----ECSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred --C-eEEEE----ECCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 1 12233 4777777777789999999998653 44444211 236678887 675555555678999999
Q ss_pred ccCCeEEeEEeccc------------cCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCC
Q 014114 287 IRTGKLLGCFIGKC------------SGSIRSIARHPTLPI-IASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 287 ~~~~~~~~~~~~~~------------~~~v~~i~~s~~~~~-l~s~~~d~~v~iwd~~~~ 333 (430)
+.+++.+..+.... ....+.|+|+|+++. ++++...+.|++.++...
T Consensus 179 ~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 179 AKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999998887420 135689999999865 556667788988887654
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.73 E-value=6.5e-06 Score=69.12 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=88.6
Q ss_pred ecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec--
Q 014114 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-- 257 (430)
Q Consensus 180 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-- 257 (430)
.-.++.+.+||..+.+.+.++.... .-..+++ ++..|+.+..++.|.++|..+.+. +..+...
T Consensus 103 tw~~~~v~v~D~~t~~~~~ti~~~~----------eG~glt~----dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~ 167 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLRQVRSFNYDG----------EGWGLTH----NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAH 167 (262)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS----------CCCCEEE----CSSCEEECCSSSEEEEECTTTCSE-EEEEECEET
T ss_pred EeeCCEEEEEECccCcEEEEEECCC----------CceEEec----CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccC
Confidence 4467899999999999998887532 1123444 667777666678899999998663 5544431
Q ss_pred C---CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc-----------ccCcEEEEEEcCCCCEEEEEeC
Q 014114 258 E---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-----------CSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 258 ~---~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
. ..++.+.|. +|+..+..-.++.|.+.|.++++.+..+... ...-.+.|+|+|+++.|+..+.
T Consensus 168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 334567776 6765555557889999999999998887642 0135689999998877766663
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.73 E-value=9.7e-06 Score=71.97 Aligned_cols=199 Identities=10% Similarity=-0.031 Sum_probs=120.4
Q ss_pred ceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeC------
Q 014114 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN------ 235 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~------ 235 (430)
.+..+++.+ +++ |+++...+.|..+|..++............ .......+++ .+ ++++.++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGV-----PFKWLYAVTV--DQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTE-----ECSCEEEEEE--CTTTCCEEEEESCSSCCTT
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCC-----cccccceEEE--ecCCCEEEEECCccccccc
Confidence 578899997 555 444544455888887765422111110000 0134677888 78 8876665432
Q ss_pred -----------CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCe--EEeEEecccc
Q 014114 236 -----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCS 301 (430)
Q Consensus 236 -----------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~--~~~~~~~~~~ 301 (430)
++.|..||..+++ +..+...-.....|+++|+++.|+++ ...+.|.+|++.... ....+... .
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~ 229 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-P 229 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-S
T ss_pred ccceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-C
Confidence 3678899987644 22222212345679999999866655 566889999987421 11122212 3
Q ss_pred CcEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeEEeecccc-ceeEEEeeecCCcce-eeecCCCcE
Q 014114 302 GSIRSIARHPTLPIIASCGL----------DSYLRFWDIKTRQLLSAVFLKQHL-NEVVFDSAFADKEVA-NAAADAPML 369 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~-~~~~~d~~v 369 (430)
+ ...+++.++|.+.++... .+.|..+|. .++.+..+...... -..+..+++ .++.+ ++....+.|
T Consensus 230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSV 306 (322)
T ss_dssp S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEE
T ss_pred C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCce
Confidence 4 788999999987666644 467888886 47777765433210 122355566 46777 777778889
Q ss_pred EEecCCC
Q 014114 370 EIQNGND 376 (430)
Q Consensus 370 ~vw~~~~ 376 (430)
.+++...
T Consensus 307 ~~~~~~~ 313 (322)
T 2fp8_A 307 GILVYDK 313 (322)
T ss_dssp EEEEC--
T ss_pred EEEeccc
Confidence 9988754
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.67 E-value=4.7e-05 Score=65.47 Aligned_cols=195 Identities=8% Similarity=-0.048 Sum_probs=121.3
Q ss_pred CceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEE-EEEeCCCcEE
Q 014114 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~ 240 (430)
..+..+++++++..|+ +-...+.|..+++........+... ......+++ ++++..| ++-...+.|.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~p~~ia~--d~~~~~lyv~d~~~~~I~ 104 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---------LGSPEGIAL--DHLGRTIFWTDSQLDRIE 104 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---------CCCEEEEEE--ETTTTEEEEEETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---------CCCccEEEE--EecCCeEEEEECCCCEEE
Confidence 3567899999665555 4455789999998765433322211 134678888 6765444 4545678999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC---CCCEEEEEccCCeEEeEEe-ccccCcEEEEEEcCCCCEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l 316 (430)
++++..... .............++++|++..|+.+.. .+.|..+++.. .....+. .. ......+++++++..|
T Consensus 105 ~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~-~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 105 VAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDN-LGLPNGLTFDAFSSQL 181 (267)
T ss_dssp EEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTT-CSCEEEEEEETTTTEE
T ss_pred EEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECC-CCCCcEEEEcCCCCEE
Confidence 999875332 2222222246789999997666655543 36788888753 3333332 22 3567899999987666
Q ss_pred EEE-eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 317 ASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 317 ~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+.+ ...+.|.++|+........ ..+. .. ...++.. ++.+ ++....+.|.+++...
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~--~~~~-~~-P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKV--LEGL-QY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEE--EECC-CS-EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCEEEEEecCCCceEEE--ecCC-CC-ceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 544 4668999999875443332 2211 22 3566654 3444 6666678899888764
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.0003 Score=70.58 Aligned_cols=282 Identities=10% Similarity=0.006 Sum_probs=161.1
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCC--CCCCCCCCceEEEEeeccCccccccCCceEEEEcc
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT 131 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (430)
+.++.. .++|. |..|+.++-|..|+...+.... +..... ....-....|.++..-. .+.+..++.
T Consensus 315 v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~---------~g~lWigt~ 381 (781)
T 3v9f_A 315 ARYIFQ--DSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDG---------QGKLWIGTD 381 (781)
T ss_dssp EEEEEE--CSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECT---------TSCEEEEEB
T ss_pred EEEEEE--eCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcC---------CCCEEEEeC
Confidence 445544 23343 7778877889999876554322 211000 00011223465554422 236777777
Q ss_pred CCeeEEEEeeeecccccCCcceeeEEe---eccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCC
Q 014114 132 KGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 132 ~g~i~v~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
++-+..++..... +..+. ......|.++...+++.+.+ |+.++-|..+|..+++.... ....
T Consensus 382 ~~Gl~~~~~~~~~---------~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~-~~~~---- 446 (781)
T 3v9f_A 382 GGGINVFENGKRV---------AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQII-ELEK---- 446 (781)
T ss_dssp SSCEEEEETTEEE---------EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEEC-CSTT----
T ss_pred CCcEEEEECCCCe---------EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEe-ccCC----
Confidence 7777777754321 11110 11235688998887776555 77666799999877654322 2110
Q ss_pred CcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec-----CCCeEEEEeeCCCCEEEEEcCCCCEE
Q 014114 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~v~ 283 (430)
.....|.++.. .+++. |..|+. +-|..||..+++. ....... ...|.++...++|++ ..|+.++-|.
T Consensus 447 --~~~~~v~~i~~--d~~g~-lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~ 518 (781)
T 3v9f_A 447 --NELLDVRVFYE--DKNKK-IWIGTH-AGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVG 518 (781)
T ss_dssp --TCCCCEEEEEE--CTTSE-EEEEET-TEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEE
T ss_pred --CCCCeEEEEEE--CCCCC-EEEEEC-CceEEEeCCCCeE-EecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEE
Confidence 01245788877 56665 555555 5688999876442 2221111 357899998888864 4555544588
Q ss_pred EEEccCCeEEeEEec---cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee-ccccceeEEEeeecCCcc
Q 014114 284 SVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 284 iwd~~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~i~~~~~s~~g~ 359 (430)
.||..+++.. .+.. .....|.++...++|.+.++. .+|.|..||..+++.. .+.. .+-....+.++...++|.
T Consensus 519 ~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 519 IYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGN 595 (781)
T ss_dssp EECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSC
T ss_pred EEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCC
Confidence 8998766543 3321 114578999999998765544 4776589998776543 2211 111123467888889998
Q ss_pred eeeecCCCcEEEecCC
Q 014114 360 ANAAADAPMLEIQNGN 375 (430)
Q Consensus 360 ~~~~~~d~~v~vw~~~ 375 (430)
+..++..| |..|+..
T Consensus 596 lW~~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 596 IWASTNTG-ISCYITS 610 (781)
T ss_dssp EEEECSSC-EEEEETT
T ss_pred EEEEcCCc-eEEEECC
Confidence 84445555 4445443
No 259
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.67 E-value=2.6e-05 Score=65.90 Aligned_cols=201 Identities=6% Similarity=-0.007 Sum_probs=133.5
Q ss_pred CceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE
Q 014114 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 241 (430)
..+..++++|++..|+ +...++.|...|+. ++.+..+..... .-...+++ .+++.++++.-.++.+.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--------~D~EGIa~--~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV--------KDLETIEY--IGDNQFVISDERDYAIYV 95 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC--------SSEEEEEE--CSTTEEEEEETTTTEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC--------CChHHeEE--eCCCEEEEEECCCCcEEE
Confidence 4689999999766554 56778899999998 877777643210 23667788 577777676667788999
Q ss_pred EECCCCCc--ceEEee------ecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc---CCeEEeEEec------cccCcE
Q 014114 242 YDTSAQRR--PVMSFD------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TGKLLGCFIG------KCSGSI 304 (430)
Q Consensus 242 wd~~~~~~--~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~------~~~~~v 304 (430)
+++..... .+.... ..+.....|+|+|.++.|+++.......||.+. ....+..+.. .....+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98875442 122221 123456899999999888887766666666654 1111122211 113457
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEEeecccc-c-----eeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 305 RSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL-N-----EVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 305 ~~i~~s~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~-----~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
.+++++|.. ++++.....+.+.++|.. ++.+..+.+.... + ...-.++|.++|.+..++..+.+++|...
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence 899999965 456666677899999965 6777777666321 1 12478899999998666777877777553
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.62 E-value=4.6e-05 Score=67.59 Aligned_cols=237 Identities=9% Similarity=-0.042 Sum_probs=136.5
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCC------------CCCCCceEEEEeeccCccccccCCceEEEE
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA------------QPEDDGIVGLHLFKRQREESSSRSRTLLTC 129 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (430)
.++|.+++++..++.|..|+..+++.. .+........ .+......++.+.... +.|+.+
T Consensus 27 d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~--------g~l~v~ 97 (322)
T 2fp8_A 27 DSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN--------NQLYIV 97 (322)
T ss_dssp CTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT--------TEEEEE
T ss_pred cCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC--------CcEEEE
Confidence 556787888989999999998655432 2221000000 0001234556554211 256655
Q ss_pred ccCCeeEEEEeeeecccccCCcceeeEEeec----cCCceEEEEEcC-CCCEEEEecC-----------------CCeEE
Q 014114 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDI-SEKFSLFGGK-----------------GVEVN 187 (430)
Q Consensus 130 ~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~v~ 187 (430)
...+.+.+++... +.++.+... .......+++.+ ++++.++-.. ++.|.
T Consensus 98 d~~~~i~~~d~~~---------g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 98 DCYYHLSVVGSEG---------GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp ETTTEEEEECTTC---------EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred ECCCCEEEEeCCC---------CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 5455566665331 112222100 113467899999 8877665432 36789
Q ss_pred EEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE-eCCCcEEEEECCCCCc-ceEEeeecCCCeEEEE
Q 014114 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVA 265 (430)
Q Consensus 188 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~ 265 (430)
.||..+++........ .....+++ +++++.|+++ ...+.|.+|++..... ....+..... ...++
T Consensus 169 ~~d~~~~~~~~~~~~~----------~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 169 KYDPSTKETTLLLKEL----------HVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp EEETTTTEEEEEEEEE----------SCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred EEeCCCCEEEEeccCC----------ccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 9998776543222110 22456788 8898866555 5568999999875221 1222222223 78899
Q ss_pred eeCCCCEEEEEcC----------CCCEEEEEccCCeEEeEEeccc---cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 266 EEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 266 ~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~---~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
+.++|++.++... .+.|..+|. .++.+..+.... ...+.++++ .++.++++....+.|..+++.
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 9999986666544 466888887 477777766431 134666666 356555555567788888875
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=0.00027 Score=70.88 Aligned_cols=318 Identities=13% Similarity=0.109 Sum_probs=172.9
Q ss_pred cceEeecCCCcEEEEEecCccCCcchhheecCCCC------cceEEEEeccCCCCCCceEEEEccCCeEEEeccCCCcee
Q 014114 15 LRALTFDSLGLIKVIEARGEDGGVPKVVERWGDPH------SSKCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
.+|..|...| +.+||..++ ....+.... ....+.++.. .++|. |..|+..+-|.++|..+++..
T Consensus 222 g~lwigt~~G-l~~~d~~~~------~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~ 291 (781)
T 3v9f_A 222 GNIWIGTSKG-LALFNANTE------TFTNFHNNPGNIHGALSSYIFSIKQ--LKDNK-LWIATELNGIMILDLQQNQFL 291 (781)
T ss_dssp CCEEEEETTE-EEEEETTTT------EEEC-----------CCCCEEEEEE--CTTSE-EEEEESSSCEEEEETTCC---
T ss_pred CCEEEEeCCc-HheECCCCC------cEEEEEcCCCccccccCceEEEEEE--CCCCC-EEEEeCCCCeEEECCCCCeee
Confidence 4455565554 677776652 122221110 1112444444 33444 666776566888988665533
Q ss_pred eeee----e--cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEee---
Q 014114 89 VAIS----N--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--- 159 (430)
Q Consensus 89 ~~~~----~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~--- 159 (430)
.... . .......-....|.++..-. .+.+..++.++-+..++.... .+..+..
T Consensus 292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~---------~g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~ 353 (781)
T 3v9f_A 292 LPEQIRFEFIREGDNNYSLSNASARYIFQDS---------FNNIWIGTWGGGINFISNAPP---------TFHTWSYSPT 353 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEEECS---------SCCEEEEEBSSCEEEECSSCC---------SCEEEC----
T ss_pred eeeccccccccCCCCCCCCCCCeEEEEEEeC---------CCCEEEEecCCeEEEeCCCCC---------cceeeccCcc
Confidence 2211 0 00000111223555444321 236777777777777765321 1112211
Q ss_pred ------ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEE
Q 014114 160 ------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 160 ------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 233 (430)
-....|.++...+++.+. .|+.++-|..||..++.... +.... . .....|.++.. .+++. |.+|
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~----~-~~~~~v~~i~~--d~~g~-lWig 423 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY-NKENR----E-LLSNSVLCSLK--DSEGN-LWFG 423 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC-C----------CCCSBEEEEEE--CTTSC-EEEE
T ss_pred ccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE-ccCCC----C-CCCcceEEEEE--CCCCC-EEEE
Confidence 123568899888777654 56766669999987654322 11100 0 11256888877 55565 5557
Q ss_pred eCCCcEEEEECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc----ccCcEEE
Q 014114 234 TNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRS 306 (430)
Q Consensus 234 ~~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~v~~ 306 (430)
+.++-|..+|..+++ +..+.. ....|.++...++++ |..|+. +.|..||..+++........ ....|.+
T Consensus 424 t~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 424 TYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp ETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred eccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 777778999987643 333321 345789998888775 555555 45899998876543322111 1357999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec-cccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+...++|.+.+.....| |..||..+++... +... +-....|.++...++|.+..++..|.+..|+...
T Consensus 500 i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 500 IAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp EEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred EEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 99999887555443344 7789877655332 2111 1123347899999999994444466557777654
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.56 E-value=0.0002 Score=59.56 Aligned_cols=171 Identities=12% Similarity=0.019 Sum_probs=109.3
Q ss_pred eEEEEccCC--eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecC
Q 014114 125 TLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 125 ~~~~~~~~g--~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 202 (430)
.+.+.+..| .+.++++.... .++...+.....-..+++. .+.+....-.++.+.+||..+.+.+.++..
T Consensus 33 LyestG~~g~S~v~~vD~~tgk--------v~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 33 LYESTGETGRSSVRKVDLETGR--------ILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp EEEEECCTTSCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCCceEEEEECCCCC--------EEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 556666654 67777765433 2233332221112233443 233444456688999999999999988875
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec--C---CCeEEEEeeCCCCEEEEEc
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~---~~i~~~~~s~~~~~l~~~~ 277 (430)
.. .-..++. ++..|+.+..++.|.++|..+.+. +..+.-. . ..++.+.+. +|+.++..-
T Consensus 104 ~~----------~Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 104 PG----------EGWALTS----DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp SS----------CCCEEEE----CSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CC----------CceEEee----CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 42 1134444 566677767789999999998663 5554432 1 345566765 666555555
Q ss_pred CCCCEEEEEccCCeEEeEEecc------------ccCcEEEEEEcCCCCEEEEEe
Q 014114 278 GSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 278 ~dg~v~iwd~~~~~~~~~~~~~------------~~~~v~~i~~s~~~~~l~s~~ 320 (430)
.+..|.+.|.++++.+..+... ...-.+.|+++|++..|+..+
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6789999999999998887632 123568999999877666555
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=3.7e-05 Score=64.57 Aligned_cols=170 Identities=14% Similarity=0.024 Sum_probs=113.2
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCC
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 204 (430)
.+++.+.+|.+.+++++.... ++.. +.....-..+++.. +.+....-.++.+.+||..+.+.+.++....
T Consensus 67 Ly~stG~~g~v~~iD~~Tgkv--------~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESAQP--------VWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEEETTTTEEEECCSSCSSC--------SEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred EEEEcCCCCEEEEEECCCCcE--------EeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 777888888988888765432 2222 22221223355543 3444445578899999999999998887532
Q ss_pred CCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee--cC---CCeEEEEeeCCCCEEEEEcCC
Q 014114 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RE---TPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~---~~i~~~~~s~~~~~l~~~~~d 279 (430)
.-..+++ ++..|+.+..++.|.++|..+.+. +..+.. +. ..++.+.|. +|+..+..-.+
T Consensus 137 ----------eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 137 ----------EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp ----------CCCCEEE----ETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred ----------ceeEEec----CCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 1234444 677777777799999999998663 555443 21 245667776 77655555567
Q ss_pred CCEEEEEccCCeEEeEEecc------------ccCcEEEEEEcCCCCEEEEEe
Q 014114 280 GDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~------------~~~~v~~i~~s~~~~~l~s~~ 320 (430)
+.|.+.|.++++.+..+... ...-.+.|+++|+++.|+..+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999998887642 023578999999876555444
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.48 E-value=4e-05 Score=75.13 Aligned_cols=268 Identities=12% Similarity=0.023 Sum_probs=136.1
Q ss_pred CCceEEEEccCC-----------eEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-
Q 014114 64 NDPLLAVARKNG-----------LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT- 131 (430)
Q Consensus 64 ~g~~l~~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (430)
++++++.|+.+. .+.+||..+++......... +......+..+.. ++..++.|+.
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-----~~~~~~~~~~~~~--------~g~lyv~GG~~ 263 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-----KHDMFCPGISMDG--------NGQIVVTGGND 263 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-----SCCCSSCEEEECT--------TSCEEEECSSS
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-----CCCCccccccCCC--------CCCEEEeCCCC
Confidence 667778776542 58899988776433221111 0111111223322 2236666663
Q ss_pred CCeeEEEEeeeecccccCCcceeeEEee----ccCCceEEEEEcCCCCEEEEec-CC-----CeEEEEECCCCceeeeec
Q 014114 132 KGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 132 ~g~i~v~~~~~~~~~~~~~~~~i~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~d-----g~v~iwd~~~~~~~~~~~ 201 (430)
+..+.+|+..... |.. .....-.++++.+++++++.|+ .+ ..+.+||..+.+-... .
T Consensus 264 ~~~v~~yd~~t~~------------W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~ 330 (656)
T 1k3i_A 264 AKKTSLYDSSSDS------------WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-P 330 (656)
T ss_dssp TTCEEEEEGGGTE------------EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-T
T ss_pred CCceEEecCcCCc------------eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-C
Confidence 4467777765321 221 1111223455667889999888 34 4699999987653221 1
Q ss_pred CCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC---------CcEEEEECCCCCcceEEeeecC---------CCeEE
Q 014114 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRE---------TPIKA 263 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~---------~~i~~ 263 (430)
...... +..... . ..+ ..++..++.++.+ ..+..||..+... ......+. ..-.+
T Consensus 331 ~~~~~p--~~~~~~-~-~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~a 403 (656)
T 1k3i_A 331 NAKVNP--MLTADK-Q-GLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNA 403 (656)
T ss_dssp TSCSGG--GCCCCT-T-GGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEE
T ss_pred Cccccc--cccccc-c-cee--ecCCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCce
Confidence 100000 000000 0 011 2344455555444 3567888876442 22221111 12344
Q ss_pred EEeeC-CCCEEEEEcCCC-----------CEEEEEccCCeEEeEE--eccccCcEEEEEEcCCCCEEEEEeCC-------
Q 014114 264 VAEEP-DSFNIYIGNGSG-----------DLASVDIRTGKLLGCF--IGKCSGSIRSIARHPTLPIIASCGLD------- 322 (430)
Q Consensus 264 ~~~s~-~~~~l~~~~~dg-----------~v~iwd~~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~s~~~d------- 322 (430)
+.|.. ++++++.|+.++ .|.+||..+.+-.... .......-.+++..|++++++.|+.+
T Consensus 404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 54543 677888887532 5778888766543322 11111222445667899999999864
Q ss_pred ----CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecC
Q 014114 323 ----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 323 ----~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~ 365 (430)
..+.+||..+.+-...-.+... ........+.|+|++ +.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCc-cccccHhhcCCCcEEEecCCC
Confidence 4689999887654321111111 111123456789999 77764
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=0.00015 Score=63.65 Aligned_cols=195 Identities=9% Similarity=-0.066 Sum_probs=118.4
Q ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC--cE
Q 014114 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i 239 (430)
......++|+++++++++-..++.|..||.... ....+... .....+++ .++++++++..... .|
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~----------~~p~gia~--~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVE----------GKVSGLAF--TSNGDLVATGWNADSIPV 97 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECS----------SEEEEEEE--CTTSCEEEEEECTTSCEE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC----------CCceeEEE--cCCCcEEEEeccCCcceE
Confidence 356778999999987777778899999998653 33222221 34778888 78888666554332 47
Q ss_pred EEEECCCCCcceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE-EeEEec--------cccCcEEEEEE
Q 014114 240 RLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIG--------KCSGSIRSIAR 309 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~--------~~~~~v~~i~~ 309 (430)
..+|..+++. ...... .......++..+++..+++-..++.|.++|..+++. +..... ..-...+.|
T Consensus 98 ~~~d~~~g~~-~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 98 VSLVKSDGTV-ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEECTTSCE-EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEcCCCCeE-EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 7778766542 221211 122334555555555555555688899999876532 211110 001234556
Q ss_pred cCCCCEEEEE-eCCCeEEEEeCCC-Cce--eeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 310 HPTLPIIASC-GLDSYLRFWDIKT-RQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 310 s~~~~~l~s~-~~d~~v~iwd~~~-~~~--~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+|++..|+.+ ...+.|..|++.. ++. ...+ .. . .....++++++|.+ ++....+.|.+++...
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~--~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VE--Q-TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EE--S-CCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-ec--c-CCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 7888766554 4678999999874 332 1111 11 1 12366799999988 6666678899998653
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=1.7e-05 Score=78.97 Aligned_cols=194 Identities=13% Similarity=0.068 Sum_probs=113.6
Q ss_pred ceEEEEEc-CCCCEEEEecC-C----CeEEEEECCCC-ceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC
Q 014114 164 TIAFSKVD-ISEKFSLFGGK-G----VEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 164 ~i~~~~~~-~~~~~l~~~~~-d----g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 236 (430)
.+...+|+ |++++|+.+.. + ..|+++|+.++ +.+.. . + ......+.| +||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~------~--~~~~~~~~W--spDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---K------V--SGTNGEIVW--GPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---C------E--EEECSCCEE--CSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---c------c--cCceeeEEE--ecCCCEEEEEEEC
Confidence 56788999 99998885432 2 35999999988 53211 0 0 012346788 8999888777655
Q ss_pred -----CcEEEEECCCCCcc-eEEeee-cCCCeEEEEeeCCCCEEEEEcC---CCCEEEEEccCC--eE-EeEEeccccCc
Q 014114 237 -----HQVRLYDTSAQRRP-VMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS 303 (430)
Q Consensus 237 -----g~i~~wd~~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~--~~-~~~~~~~~~~~ 303 (430)
..|+++++.++... ...+.. .......+.|+|||++|+..+. ...|.++|+.++ +. +..+.......
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 36888888775421 233332 2335678899999998887653 345888898765 22 13333222455
Q ss_pred EEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeeE-EeeccccceeEEEeeecCCcce-eeecCCCcEEEe
Q 014114 304 IRSIARHPTLPIIASCGLD----SYLRFWDIKTRQLLSA-VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQ 372 (430)
Q Consensus 304 v~~i~~s~~~~~l~s~~~d----~~v~iwd~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw 372 (430)
..++.|+..+.+++....+ ..|..+|+.++..... + +....+..+..+.+.. +.+ ++...++..++|
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l-i~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL-VDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIW 394 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE-ECCCSSEEEEEEEECS-SEEEEEEEETTEEEEE
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE-ECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEE
Confidence 6667665544455555444 3677777765322111 1 2222222345566653 334 666667754443
No 267
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.30 E-value=0.00025 Score=62.21 Aligned_cols=188 Identities=9% Similarity=0.100 Sum_probs=119.1
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee--CCCCC---EEEEEe-C--CCcEEEEEC
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHR---KFVAGT-N--DHQVRLYDT 244 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~~~~-~--dg~i~~wd~ 244 (430)
...+++.....+-|.+||+ +++.+..+... .++.+...+ .-.++ ++++.. . +++|.+|++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g-----------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG-----------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCS-----------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCC-----------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 4455665566778999999 88888887642 244444421 00222 223333 3 578999977
Q ss_pred CCCCcceEEeee------cC-CCeEEEEe--eCC-CC-EEEEEcCCCCEEEEEcc-------CCeEEeEEeccccCcEEE
Q 014114 245 SAQRRPVMSFDF------RE-TPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR-------TGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 245 ~~~~~~~~~~~~------~~-~~i~~~~~--s~~-~~-~l~~~~~dg~v~iwd~~-------~~~~~~~~~~~~~~~v~~ 306 (430)
......+..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+++|.. .+.+-.
T Consensus 107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Eg 184 (355)
T 3amr_A 107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEG 184 (355)
T ss_dssp CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEE
T ss_pred CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcce
Confidence 432223444421 11 45666777 664 43 67888888999999883 3466778876 467889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCC-----CCceeeEEeeccccceeEEEeee--cCCcc-e--eeecCCCcEEEecCC
Q 014114 307 IARHPTLPIIASCGLDSYLRFWDIK-----TRQLLSAVFLKQHLNEVVFDSAF--ADKEV-A--NAAADAPMLEIQNGN 375 (430)
Q Consensus 307 i~~s~~~~~l~s~~~d~~v~iwd~~-----~~~~~~~~~~~~~~~~~i~~~~~--s~~g~-~--~~~~~d~~v~vw~~~ 375 (430)
+...+....|+.+-+|.-|..++.+ +++.+..+. .++...-+..|++ .++|+ + ++.-.++.+.+|+..
T Consensus 185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999988899999998777666754 344554421 2333323466666 56666 4 344457799999986
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.0012 Score=59.92 Aligned_cols=199 Identities=8% Similarity=-0.075 Sum_probs=121.0
Q ss_pred CCceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcE
Q 014114 162 SGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i 239 (430)
...+..++|++.+..|+ +-...+.|+.+++........+.... .....+++ ++. +.++++-...+.|
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------~~p~glav--d~~~g~lY~~d~~~~~I 183 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------ESPGGLAV--DWVHDKLYWTDSGTSRI 183 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC---------SCCCCEEE--ETTTTEEEEEETTTTEE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC---------CCccEEEE--EeCCCeEEEEcCCCCeE
Confidence 34578899997655555 44567889999987665433332211 22456677 554 4455555567789
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CC-CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
.+.++..... ...+...-.....|+++|.+..|+... .. +.|..+++............ ....+.|+|+|++..|+
T Consensus 184 ~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 184 EVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEE
T ss_pred EEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEE
Confidence 8888875332 233333335678999998776665554 33 67888887543222222222 44678999998766655
Q ss_pred EE-eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 318 s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
.+ +..+.|..+|+.... ...+ +...... ...+++..+.-+++....+.|..++...
T Consensus 262 ~aD~~~~~I~~~d~dG~~-~~~~-~~~~~~~-P~giav~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 262 WVDAKHHVIERANLDGSH-RKAV-ISQGLPH-PFAITVFEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEETTTTEEEEECTTSCS-CEEE-ECSSCSS-EEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCEEEEEeCCCCe-eEEE-EECCCCC-ceEEEEECCEEEEeeCCCCeEEEEECCC
Confidence 54 466789999986433 2322 2222222 4777874433337777788888887543
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0021 Score=58.66 Aligned_cols=201 Identities=9% Similarity=-0.031 Sum_probs=121.9
Q ss_pred cCCceEEEEEcCCCCEEEEe-cCCCeEEEEECCCCc----eeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEe
Q 014114 161 ASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT 234 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~ 234 (430)
....+..++|++.+..|+.. ...+.|+.+++.... ....+... ......+++ ++ .++++++-.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---------~~~p~glav--D~~~~~lY~~d~ 178 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDS 178 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS---------CSCEEEEEE--ETTTTEEEEEET
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---------CCCcccEEE--EecCCceEEEEC
Confidence 34568899999866655544 556789999886521 22222211 134667788 55 455555656
Q ss_pred CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC--CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCC
Q 014114 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 235 ~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~ 312 (430)
..+.|.+.++..... ...+...-.....|++.|.+.+|+.... .+.|...++........+... -...+.|+++++
T Consensus 179 ~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glavd~~ 256 (400)
T 3p5b_L 179 VLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLL 256 (400)
T ss_dssp TTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-CSCEEEEEEETT
T ss_pred CCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-CCceEEEEEEeC
Confidence 778999999886432 3333333456789999997666665542 367888888543322222332 457899999987
Q ss_pred CCEEEEEe-CCCeEEEEeCCCCceeeEEee-ccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 313 LPIIASCG-LDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 313 ~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
+..|+.+. ..+.|..+|+.... ...+.. ...... ..++++..+.-+++-...+.|..++...
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~-P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSS-EEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred CCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCC-CEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 77766654 56789999986433 333211 112222 3677774443347777778888887543
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.00032 Score=64.80 Aligned_cols=155 Identities=10% Similarity=0.064 Sum_probs=99.5
Q ss_pred ceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-CC----
Q 014114 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH---- 237 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg---- 237 (430)
....++++| ++..|+++...+.|+.+|+..+........ ......++| ++++++|+++.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------~~~P~~ia~--d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------LSKVRTICW--THEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------CSCEEEEEE--CTTSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcceEEE--eCCCCEEEEEeCCCCcccc
Confidence 456889998 466666665558899999987665443331 144778999 889996666554 22
Q ss_pred cEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEE
Q 014114 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 316 (430)
.+.+++..........+.. ......++++| ++.++++-..++.|..++...+..............+.|+|+|++++|
T Consensus 206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 3444554332211122322 23457788999 676666666778899999987665322222113457899999999955
Q ss_pred -EEEeCCCeEEEEeCC
Q 014114 317 -ASCGLDSYLRFWDIK 331 (430)
Q Consensus 317 -~s~~~d~~v~iwd~~ 331 (430)
++-...+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 444567889998865
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.28 E-value=0.0003 Score=65.01 Aligned_cols=198 Identities=16% Similarity=0.034 Sum_probs=117.8
Q ss_pred ceEEEEEcCC--CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC---C-
Q 014114 164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H- 237 (430)
Q Consensus 164 ~i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g- 237 (430)
....++++|+ ...|+.+...+.|+.+|+.++......... .....+++ +++++++++.... .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------~~P~giav--d~dG~lyVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI----------GQCADVNF--TLNGDMVVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC----------SCEEEEEE--CTTCCEEEEECCSCTTSE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC----------CCccEEEE--CCCCCEEEEcCCCCcccc
Confidence 3568899984 455555554488999999877765443311 45788999 8899844443321 1
Q ss_pred cEEEEECCCCCcceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCCEEEEEccCCeEEeEE-eccccCcEEEEEEcCCCCE
Q 014114 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~ 315 (430)
.+..++..........+. .-.....++++| ++.++++-..++.|+.+|..++.....+ .......-..|+|+|++++
T Consensus 208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 233333322211111222 224456788999 6665555556788999999877663332 2211223457999999985
Q ss_pred EE-EEeCCCeEEEEeCC--CCcee--eEEeec----c---------ccceeEEEeee---------cCCcce-eeecCCC
Q 014114 316 IA-SCGLDSYLRFWDIK--TRQLL--SAVFLK----Q---------HLNEVVFDSAF---------ADKEVA-NAAADAP 367 (430)
Q Consensus 316 l~-s~~~d~~v~iwd~~--~~~~~--~~~~~~----~---------~~~~~i~~~~~---------s~~g~~-~~~~~d~ 367 (430)
|+ +-...+.|+.++.. ++... ..+.-. + .... ...+++ .++|.+ ++-....
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~-P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG-PNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS-EEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC-CccEEEEccccccccCCCCcEEEEECCCC
Confidence 54 44567889998765 33221 111000 0 1112 367888 788888 7777778
Q ss_pred cEEEecCC
Q 014114 368 MLEIQNGN 375 (430)
Q Consensus 368 ~v~vw~~~ 375 (430)
.|+.++..
T Consensus 366 ~I~~~~~~ 373 (433)
T 4hw6_A 366 TVRVLTPE 373 (433)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 88888753
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.0027 Score=57.68 Aligned_cols=233 Identities=8% Similarity=-0.031 Sum_probs=134.3
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+.+.. ..|+..++........+... .....+.+..... ..+++-...+.|..+++....
T Consensus 89 ~l~~~~~-~~I~~i~~~~~~~~~~~~~~---------~~~~gl~~d~~~~-------~ly~~D~~~~~I~r~~~~g~~-- 149 (386)
T 3v65_B 89 VLLFANR-IDIRQVLPHRSEYTLLLNNL---------ENAIALDFHHRRE-------LVFWSDVTLDRILRANLNGSN-- 149 (386)
T ss_dssp EEEEECB-SCEEEECTTSCCCEEEECSC---------SCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSCC--
T ss_pred eeEeecC-ccceeeccCCCcEEEEecCC---------CccEEEEEecCCC-------eEEEEeCCCCcEEEEecCCCC--
Confidence 4555543 56888888655543333221 2456676654322 245555666777777654221
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+..+-.........+++++.+. ++++-...+.|.+.++........+... ......+++ +|
T Consensus 150 -------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~P~giav--dp 211 (386)
T 3v65_B 150 -------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HP 211 (386)
T ss_dssp -------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS---------CSCEEEEEE--ET
T ss_pred -------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC---------CCCCcEEEE--Ec
Confidence 1111111122446788887544 4455556678888888654332222211 134678888 66
Q ss_pred CCCEEEEEe-CC-CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccccC
Q 014114 226 DHRKFVAGT-ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 226 ~~~~l~~~~-~d-g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
.+..|+.+. .. +.|..+++..... .......-.....|+|+|++..|+.+. ..+.|..+|+........+... ..
T Consensus 212 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~ 289 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP 289 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CS
T ss_pred CCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CC
Confidence 555555444 34 6888888875332 222222234578999998766665554 5577999998643322223322 45
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
....|++ ..+.++++-...+.|..++..+++.+..+
T Consensus 290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 6678888 34556666667788999997778777764
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.24 E-value=0.0021 Score=56.33 Aligned_cols=227 Identities=9% Similarity=-0.029 Sum_probs=119.4
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
.++|.++++-..++.|..||... +....+.. .....++.+.+. +..+++....+...++.+.
T Consensus 40 ~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~d--------G~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 40 APDGTIFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTSN--------GDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECTT--------SCEEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcCC--------CcEEEEeccCCcceEEEEc
Confidence 55677666666889999999754 43333322 124555555432 2234433322232333322
Q ss_pred eecccccCCcceee-EEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeecCC--C-CCCCCcccCcce
Q 014114 142 VTKVSAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPP--P-KNSLGIFTPTWF 216 (430)
Q Consensus 142 ~~~~~~~~~~~~i~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~--~-~~~~~~~~~~~v 216 (430)
.. ++.+. +...........++..+.+..+++-..++.|+.+|..++. .+...... . .....+ ...
T Consensus 102 ~~-------~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~p 171 (306)
T 2p4o_A 102 KS-------DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAA 171 (306)
T ss_dssp CT-------TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSE
T ss_pred CC-------CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcC
Confidence 11 11222 2222112223445555555555555568899999987653 22211100 0 000011 123
Q ss_pred eEeEEeeCCCCCEE-EEEeCCCcEEEEECCC-CCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE
Q 014114 217 TSAAFLSIDDHRKF-VAGTNDHQVRLYDTSA-QRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 217 ~~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~-~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
+.+ ++++..| ++-...+.|..|++.. +.. ....+.. ......++++++|+++++....+.|.++|.. ++..
T Consensus 172 ngi----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 172 NGL----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEE----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred CCc----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 334 3466655 4445678999999874 221 1122211 1345678999999877776677899999975 6553
Q ss_pred e--EEeccccCcEEEEEEc---CCCCEEEEEeCCC
Q 014114 294 G--CFIGKCSGSIRSIARH---PTLPIIASCGLDS 323 (430)
Q Consensus 294 ~--~~~~~~~~~v~~i~~s---~~~~~l~s~~~d~ 323 (430)
. .+... ....++++|. |++..|+.++..+
T Consensus 246 ~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 246 IIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence 2 23222 3568999998 8877776665443
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.24 E-value=0.0022 Score=56.50 Aligned_cols=199 Identities=9% Similarity=-0.060 Sum_probs=119.5
Q ss_pred CCceEEEEEcCCCCEEE-EecCCCeEEEEECCC----CceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeC
Q 014114 162 SGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTN 235 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~ 235 (430)
...+..++|++.++.|+ +-...+.|..+++.. ......+.... .....+++ ++. ++++++-..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------~~p~glav--d~~~~~ly~~d~~ 97 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------QAPDGLAV--DWIHSNIYWTDSV 97 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---------SCCCEEEE--ETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC---------CCcCEEEE--eecCCeEEEEECC
Confidence 35678999998665555 445568999999875 22122221110 23567777 544 445555567
Q ss_pred CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCC--CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC
Q 014114 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 236 dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
.+.|.++++.... ....+.........++++|.+..|+.+... +.|..+++. +.....+....-...+.|++++++
T Consensus 98 ~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 98 LGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp TTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTT
T ss_pred CCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccC
Confidence 8899999987533 222233333567899999976666555432 678888874 443333322114568899999887
Q ss_pred CEEEEEe-CCCeEEEEeCCCCceeeEEeec-cccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 314 PIIASCG-LDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 314 ~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
..|+.+. ..+.|..+|+.. .....+... ..... ...+++.. +.+ ++-...+.|..++...
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~-P~giav~~-~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAH-PFSLAVFE-DKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp TEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSS-EEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEeecCCccCC-cEEEEEEC-CEEEEEECCCCeEEEEeCCC
Confidence 6665554 667899999864 333332111 11122 36777754 445 7777778888887643
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.23 E-value=0.0025 Score=56.93 Aligned_cols=197 Identities=8% Similarity=-0.050 Sum_probs=120.1
Q ss_pred CceEEEEEcCCCCEEEE-ecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC-CCEEEEEeCCCcEE
Q 014114 163 GTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~ 240 (430)
..+..++|++....|+. -...+.|..+++........+.... .....+++ ++. ++++++-...+.|.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------~~p~glav--d~~~g~ly~~d~~~~~I~ 141 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------ESPGGLAV--DWVHDKLYWTDSGTSRIE 141 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCEEEE--ETTTTEEEEEETTTTEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC---------CCccEEEE--ecCCCeEEEEcCCCCeEE
Confidence 45788999976665554 4567889999987654333222211 23456777 554 44555556678999
Q ss_pred EEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CC-CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEE
Q 014114 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s 318 (430)
+.++..... ...+...-.....++++|.+..|+... .. +.|..+++.. .....+........+.|+++|++..|+.
T Consensus 142 ~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 142 VANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp EEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred EEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEE
Confidence 999876432 222333335678999999665555544 44 6788888753 3322332211456789999987766655
Q ss_pred E-eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 319 C-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 319 ~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+ ...+.|..+|+.... ...+ +...... ...+++. .+.+ ++-...+.|..++...
T Consensus 220 aD~~~~~I~~~~~dG~~-~~~~-~~~~~~~-P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 220 VDAKHHVIERANLDGSH-RKAV-ISQGLPH-PFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EETTTTEEEEEETTSCS-CEEE-ECSSCSS-EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EECCCCEEEEEeCCCCc-eEEE-EeCCCCC-ceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 5 466789999986433 2322 2222222 3677774 4444 7777778888887433
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.20 E-value=0.002 Score=54.37 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=120.0
Q ss_pred CceEEEEeeccCccccccCCceEEE-EccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 104 DGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 104 ~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
+.+.++.+.+... .|++ ...++.|...+.. . ..++.+.+........|++.+++.++++.-.
T Consensus 27 ~~lSGla~~~~~~--------~L~aV~d~~~~I~~ld~~--g-------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWSAQSN--------TLFSTINKPAAIVEMTTN--G-------DLIRTIPLDFVKDLETIEYIGDNQFVISDER 89 (255)
T ss_dssp SCEEEEEEETTTT--------EEEEEEETTEEEEEEETT--C-------CEEEEEECSSCSSEEEEEECSTTEEEEEETT
T ss_pred cCcceeEEeCCCC--------EEEEEECCCCeEEEEeCC--C-------CEEEEEecCCCCChHHeEEeCCCEEEEEECC
Confidence 3577777765322 4444 5555666665543 1 2344444333356788999988887777667
Q ss_pred CCeEEEEECCCCcee---eeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC--CCcceEEee--
Q 014114 183 GVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFD-- 255 (430)
Q Consensus 183 dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~-- 255 (430)
++.+.++++.....+ ....... ...........++| +|.++.|+++.......+|.... ....+..+.
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~---~~~~~N~g~EGLA~--d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPL---QESPTNCGFEGLAY--SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCC---SSCCCSSCCEEEEE--ETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred CCcEEEEEcCCCCeeeeeeeecccc---ccccccCCcceEEE--eCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 788999988654422 2221110 00111244789999 78887777776655445554431 111122221
Q ss_pred -----ecCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCCeEEeEEecc---c-----cCcEEEEEEcCCCCEEEEEeC
Q 014114 256 -----FRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKLLGCFIGK---C-----SGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 256 -----~~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~-----~~~v~~i~~s~~~~~l~s~~~ 321 (430)
.+...+.+++++|... +++.......|.++|.. ++.+..+.-. + -...-.|+|.++|++.++ ++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE 242 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE 242 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC
Confidence 1234578999999654 55556666788899975 6665555432 0 126789999999985554 77
Q ss_pred CCeEEEEeC
Q 014114 322 DSYLRFWDI 330 (430)
Q Consensus 322 d~~v~iwd~ 330 (430)
.+.++.|.-
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 777777754
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.10 E-value=0.0043 Score=54.55 Aligned_cols=199 Identities=10% Similarity=-0.015 Sum_probs=121.1
Q ss_pred CceEEEEEcCCCCEEE-EecCCCeEEEEECCCCcee-eeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCCCcE
Q 014114 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i 239 (430)
.....++|++.+..|+ +-...+.|..+++...... ..+... ......+++ ++ .++++++-...+.|
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---------l~~p~glav--d~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---------LLSPDGLAC--DWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC---------CSCCCEEEE--ETTTTEEEEEETTTTEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC---------CCCccEEEE--EcCCCeEEEEECCCCEE
Confidence 3466889988555544 4456788999998765321 111111 023556777 54 45555555667899
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC--CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
.++++..... ...+.........+++.|.+..|+.... .+.|..+++. +.....+....-...+.|+++|++..|+
T Consensus 104 ~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 104 EVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEE
Confidence 9999876332 2223233456789999987666666552 5678888875 3333333221145678999999766665
Q ss_pred EE-eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 318 s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
.+ +..+.|..+|+.. .....+ ..+.... ...+++..++-+.+-...+.|..++....
T Consensus 182 ~aD~~~~~I~~~d~dG-~~~~~~-~~~~~~~-P~glav~~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 182 WADAKLNFIHKSNLDG-TNRQAV-VKGSLPH-PFALTLFEDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEETTTTEEEEEETTS-CSCEEE-ECSCCSC-EEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCEEEEEcCCC-CceEEE-ecCCCCC-ceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence 55 4668899999864 333332 2222222 46777765544477777788888887543
No 278
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.10 E-value=0.013 Score=60.73 Aligned_cols=179 Identities=11% Similarity=0.040 Sum_probs=102.0
Q ss_pred eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee--CCCCCEEEEEe----------CCCcEEEEECCCCCcceE
Q 014114 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGT----------NDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 185 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~ 252 (430)
.|++.|..+.+.+..+.-... ..+.+++... +....+|++|+ ..|.|++|++...+-...
T Consensus 808 ~i~lidp~t~~~i~~~~l~~n--------E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv 879 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQN--------EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 879 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTT--------EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCCCC--------cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence 356666666665544443321 2344444321 22246888886 357899999874321111
Q ss_pred EeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeC--
Q 014114 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI-- 330 (430)
Q Consensus 253 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~-- 330 (430)
.-....+++++++-- +| +|++| ....|++|++...+.+. ....+-..|..+.....+.+++.|..-..|.++..
T Consensus 880 ~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp EEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred EEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 112336788888743 45 45554 34689999997665443 21110112332233335778888886666666543
Q ss_pred CCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
..++.... -+......++++.|-.++.++.+..+|.+.++..+..
T Consensus 956 ~~~~L~~~--a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 956 MEGNFEEI--ARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TTTEEEEE--EECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred CCCeEEEE--EeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 33333322 2222233468888877777788999999999987763
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.09 E-value=0.0049 Score=55.04 Aligned_cols=233 Identities=9% Similarity=-0.025 Sum_probs=132.9
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+.+.. ..|+..++........+... .....+.+..... ..+++-...+.|..+++....
T Consensus 46 ~ll~~~~-~~I~~i~~~g~~~~~~~~~~---------~~~~~l~~d~~~~-------~ly~~D~~~~~I~r~~~~g~~-- 106 (349)
T 3v64_C 46 VLLFANR-IDIRQVLPHRSEYTLLLNNL---------ENAIALDFHHRRE-------LVFWSDVTLDRILRANLNGSN-- 106 (349)
T ss_dssp EEEEECB-SCEEEECTTSCCEEEEECSC---------SCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSCS--
T ss_pred eeEeecc-cceEEEeCCCCeeEEeecCC---------CceEEEEEecccc-------EEEEEeccCCceEEEecCCCC--
Confidence 4555543 45888887554433332221 2455666654322 244555666777777654321
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+..+-.........+++++.+ +++++-...+.|.+.++........+.... .....+++ +|
T Consensus 107 -------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l---------~~P~~iav--dp 168 (349)
T 3v64_C 107 -------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---------EKPRAIAL--HP 168 (349)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC---------SCEEEEEE--ET
T ss_pred -------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC---------CCcceEEE--ec
Confidence 111111112345678888754 444555667889999987543322222111 34678888 66
Q ss_pred CCCEEE-EEeCC-CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccccC
Q 014114 226 DHRKFV-AGTND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 226 ~~~~l~-~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
.+..|+ +-... +.|..+++..... .......-.....|+++|++..|+.+. ..+.|..+|+........+... ..
T Consensus 169 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~ 246 (349)
T 3v64_C 169 MEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP 246 (349)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CS
T ss_pred CcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CC
Confidence 555444 44444 7899998875332 222222234578999998776666554 5577999998643322223332 45
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
....|++ ..+.++++-...+.|..++..+|+.+..+
T Consensus 247 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 247 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 6678888 34555566667788999987777776664
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.016 Score=57.47 Aligned_cols=200 Identities=10% Similarity=-0.055 Sum_probs=117.2
Q ss_pred CCceEEEEEcCCCCEEE-EecCCCeEEEEECCCC----ceeeeecCCCCCCCCcccCcceeEeEEeeCCCC-CEEEEEeC
Q 014114 162 SGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTN 235 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~ 235 (430)
...+..|+|++....|+ +-...+.|+.+++... .....+.... .....|++ ++.+ +++++-..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l---------~~P~GLAv--D~~~~~LY~tD~~ 491 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------QAPDGLAV--DWIHSNIYWTDSV 491 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---------SCCCEEEE--ETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC---------CCcceeee--eecCCcEEEEecC
Confidence 35677899988555554 4455678998888652 1222222111 33567777 5555 45555567
Q ss_pred CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-C-CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCC
Q 014114 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 236 dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 313 (430)
.+.|.+.++..... ...+...-.....|++.|...+|+.... . +.|...++........+... ....+.|++++.+
T Consensus 492 ~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~ 569 (791)
T 3m0c_C 492 LGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLS 569 (791)
T ss_dssp TTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTT
T ss_pred CCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCC
Confidence 78999999986432 2233333456889999998666665542 2 67888888543333333332 4678999999877
Q ss_pred CEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 314 PIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 314 ~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
..|+.+. ..+.|..+++........+...+.... ..+|++..+.-|++-...+.|...+..
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~-P~glav~~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS-EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCC-CCEEEEeCCEEEEEECCCCEEEEEeCC
Confidence 6666554 567899999864433332111112222 356666544323666666777766543
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.98 E-value=0.0036 Score=54.93 Aligned_cols=204 Identities=12% Similarity=0.152 Sum_probs=119.5
Q ss_pred CCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCce-EEEEcc--CCeeEEEE
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTT--KGKASMRS 139 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~--~g~i~v~~ 139 (430)
|...+++.....+-+.+||+ +|+.+..+.. ..+..+.+-..-.-.. ..-.. +++.-. ++++.+++
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l~g-~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPLNG-KKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEETT-EEEEEEEEEECSTTCCEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEecccccCC-ceEeEEEEeCCCCCCCeEEEEE
Confidence 34445666667788999999 8999888753 2333333322110000 00002 233333 57899998
Q ss_pred eeeecccccCCcceeeEEe-----eccC-CceEEEEE--cCC-CC-EEEEecCCCeEEEEECC-------CCceeeeecC
Q 014114 140 IEVTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKP 202 (430)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~-----~~~~-~~i~~~~~--~~~-~~-~l~~~~~dg~v~iwd~~-------~~~~~~~~~~ 202 (430)
+.... +.+.... +... ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++..
T Consensus 106 iDp~~-------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 106 IDGKN-------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp ECTTT-------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred ECCCC-------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 74211 1111110 0112 45566776 774 43 68888889999999883 3345666654
Q ss_pred CCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC----CcceEEee-ec-CCCeEEEEe--eCCCC-EE
Q 014114 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----RRPVMSFD-FR-ETPIKAVAE--EPDSF-NI 273 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~-~~-~~~i~~~~~--s~~~~-~l 273 (430)
. ..+..+.. ++....|+.+-++.-|..++.... ...+..+. ++ ...+..|++ .++++ +|
T Consensus 179 g----------sq~Egcvv--Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 179 N----------SQTEGMAA--DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp S----------SCEEEEEE--ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred C----------CCcceEEE--cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 3 44777777 677889999999877777775421 12233332 11 236788887 45555 66
Q ss_pred EEEc-CCCCEEEEEcc-CCeEEeEEe
Q 014114 274 YIGN-GSGDLASVDIR-TGKLLGCFI 297 (430)
Q Consensus 274 ~~~~-~dg~v~iwd~~-~~~~~~~~~ 297 (430)
++++ .++...+||.. +.+.+..|.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 6666 66789999996 566666664
No 282
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.97 E-value=0.025 Score=58.71 Aligned_cols=318 Identities=8% Similarity=-0.010 Sum_probs=157.8
Q ss_pred eEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccC--CCCCCceEEEEcc-CCeEEEeccCCCceeeeeee
Q 014114 17 ALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASID--DSQNDPLLAVARK-NGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~ 93 (430)
++.+. .+.+.+++++.+. ....... .-+..+.++++... +...++++++|.. |++|+|+++.+.+.+.....
T Consensus 526 vvva~-g~~l~~fel~~~~---L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 526 VVVAV-GRALYYLQIHPQE---LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp EEEEE-TTEEEEEEEETTE---EEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEE-CCEEEEEEeeCCc---eeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 44443 5677777776421 1111111 12445667776541 1223579999996 99999999986655543322
Q ss_pred cCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCC
Q 014114 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
. ......++.+.... ...+++.+..+|.+.-+.+.... +. -...+...+. ..++.-..+...
T Consensus 601 ~-------~~~~p~si~l~~~~------~~~~L~igl~dG~l~~~~~d~~t---g~-l~d~r~~~LG-~~pv~L~~~~~~ 662 (1158)
T 3ei3_A 601 G-------GEIIPRSILMTTFE------SSHYLLCALGDGALFYFGLNIET---GL-LSDRKKVTLG-TQPTVLRTFRSL 662 (1158)
T ss_dssp C-------SSCCEEEEEEEEET------TEEEEEEEETTSEEEEEEECTTT---CC-EEEEEEEECC-SSCCEEEEEESS
T ss_pred C-------CCCCCcEEEEEEeC------CCcEEEEEeCCCeEEEEEEcCCC---Cc-cccceeEEcC-CCceEEEEEeeC
Confidence 1 11122333333211 12378999999998777654211 00 0011111111 123333333322
Q ss_pred CC-EEEEecCCCeEEEEECCCCceeee-ecCCCCCCCCcccCcce-eEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCc
Q 014114 174 EK-FSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWF-TSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 174 ~~-~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~ 249 (430)
+. .+++.+ +....+|.-. +..... +.. ..+ ....|. +.. ..-++..+ ++.++|..+.....
T Consensus 663 ~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~-----------~~v~~~~~F~-se~~~~g~v~~~-~~~LrI~~i~~~~~ 727 (1158)
T 3ei3_A 663 STTNVFACS-DRPTVIYSSN-HKLVFSNVNL-----------KEVNYMCPLN-SDGYPDSLALAN-NSTLTIGTIDEIQK 727 (1158)
T ss_dssp SCEEEEEES-SSCEEEEESS-SSEEEEEBSS-----------SCCCEEEEEC-CSSSTTEEEEEC-SSCEEEEEECCSSS
T ss_pred CceeEEEEC-CCCEEEEEcC-CceEEeccCh-----------HHhceEeccC-cccCCCcEEEEc-CCceEEEEecccCC
Confidence 22 223222 3333344332 222211 111 112 223342 221 23344333 45688887754332
Q ss_pred -ceEEeeecCCCeEEEEeeCCCCEEEEEcCC-------------------------------------------------
Q 014114 250 -PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------------------------------------------------- 279 (430)
Q Consensus 250 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------------------------------------- 279 (430)
.+..+.. ...++.++++|..+.++++..+
T Consensus 728 ~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 806 (1158)
T 3ei3_A 728 LHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEV 806 (1158)
T ss_dssp EEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEE
T ss_pred eeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceee
Confidence 2333333 3567888888877665543311
Q ss_pred CCEEEEEccCCeEEeEEeccccCcEEEEE---EcCC-CCEEEEEe----------CCCeEEEEeCCCCceeeEEeecccc
Q 014114 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIA---RHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSAVFLKQHL 345 (430)
Q Consensus 280 g~v~iwd~~~~~~~~~~~~~~~~~v~~i~---~s~~-~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~ 345 (430)
+.|++.|..+.+.+..+.-.....+.+++ |..+ ..+|+.|. ..|.|++|++..++. ..+ .....
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv-~~~~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTV-AEKEV 884 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEE-EEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEE-EEEEc
Confidence 23677787777776665533234455554 3332 46788776 347899999975433 222 22223
Q ss_pred ceeEEEeeecCCcceeeecCCCcEEEecCCCC
Q 014114 346 NEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 346 ~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~~ 377 (430)
.+.+++++-- +|.+ .++....|++|+....
T Consensus 885 ~g~v~al~~~-~g~L-la~ig~~l~vy~l~~~ 914 (1158)
T 3ei3_A 885 KGAVYSMVEF-NGKL-LASINSTVRLYEWTTE 914 (1158)
T ss_dssp SSCEEEEEEE-TTEE-EEEETTEEEEEEECTT
T ss_pred CCcCEEEeee-CCEE-EEEcCCEEEEEECCCC
Confidence 4445666532 3444 3344578999987653
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.92 E-value=0.00057 Score=66.96 Aligned_cols=199 Identities=13% Similarity=0.012 Sum_probs=107.9
Q ss_pred EEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CC-----Cc
Q 014114 166 AFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-----HQ 238 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-----g~ 238 (430)
.++++..++.++++|+. +..+.+||..+.+-...-..+. +.+-.+++. -+++++++.|+ .+ ..
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~--------~R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV--------ARGYQSSAT--MSDGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS--------CCSSCEEEE--CTTSCEEEECCCCCSSSCCCC
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc--------cccccceEE--ecCCeEEEEeCcccCCccccc
Confidence 34677788999999884 4579999988764322211111 112233444 46889999988 34 46
Q ss_pred EEEEECCCCCcceEEeee-----cCCCeEEEEeeCCCCEEEEEcCCC---------CEEEEEccCCeEEeEEeccc----
Q 014114 239 VRLYDTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIYIGNGSG---------DLASVDIRTGKLLGCFIGKC---- 300 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg---------~v~iwd~~~~~~~~~~~~~~---- 300 (430)
+.+||..+.. -..+.. ....-....+..++..++.|+.+| .+..||..+...........
T Consensus 316 ~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~ 393 (656)
T 1k3i_A 316 GEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393 (656)
T ss_dssp EEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred ceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence 8999998643 112110 000000012234555555555443 46788887765433322210
Q ss_pred ----cCcEEEEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee
Q 014114 301 ----SGSIRSIARHP-TLPIIASCGLDS-----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 301 ----~~~v~~i~~s~-~~~~l~s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~ 363 (430)
...-.++.|.. ++++++.|+.++ .|.+||..+.+......-.-+....-.+++..|+|++ +.+
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~G 473 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITG 473 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEEC
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEEC
Confidence 01234455543 677888887543 6888888776544321001111111234466789988 777
Q ss_pred cCC-----------CcEEEecCCC
Q 014114 364 ADA-----------PMLEIQNGND 376 (430)
Q Consensus 364 ~~d-----------~~v~vw~~~~ 376 (430)
+.+ ..+.+||...
T Consensus 474 G~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 474 GQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CcccCcCcCCCCcccceEEEcCCC
Confidence 654 4567777643
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.91 E-value=0.00024 Score=70.69 Aligned_cols=154 Identities=6% Similarity=-0.016 Sum_probs=92.3
Q ss_pred ceeEeEEeeC-CCCCEEEEEeC-CC----cEEEEECCCC-CcceEEeeecCCCeEEEEeeCCCCEEEEEcCC-----CCE
Q 014114 215 WFTSAAFLSI-DDHRKFVAGTN-DH----QVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDL 282 (430)
Q Consensus 215 ~v~~~~~~~~-~~~~~l~~~~~-dg----~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~v 282 (430)
.+....| + ||+++|+.+.. +| .|+++|+.++ +.....+.. ....++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 4667788 9 99998886543 33 4999999987 521111221 13468899999888777654 257
Q ss_pred EEEEccCCeE--EeEEeccccCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc-ee--eEEeeccccceeEEEeee
Q 014114 283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGL---DSYLRFWDIKTRQ-LL--SAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 283 ~iwd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~~---d~~v~iwd~~~~~-~~--~~~~~~~~~~~~i~~~~~ 354 (430)
.++++.+++. ...+..........+.|+|||++|+..+. ...|+++|+.++. .. ..+ .... ....+.+.|
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~-~~~~~s~~~ 327 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPRE-KGVRYDVQM 327 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCCC-TTCCEEEEE
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecCC-CCceEEEee
Confidence 8888876542 22232221345678899999998876652 3468899998763 12 221 2222 333355555
Q ss_pred cCCcce-eeecCC--C--cEEEecCC
Q 014114 355 ADKEVA-NAAADA--P--MLEIQNGN 375 (430)
Q Consensus 355 s~~g~~-~~~~~d--~--~v~vw~~~ 375 (430)
+.++.+ +....+ + .|..++..
T Consensus 328 ~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp ETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred eeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 555555 444333 3 45555543
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.00042 Score=63.96 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=98.0
Q ss_pred ceeEeEEeeCC-CCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CC----CEEEEEcc
Q 014114 215 WFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG----DLASVDIR 288 (430)
Q Consensus 215 ~v~~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg----~v~iwd~~ 288 (430)
....+++ +| ++..|+++...+.|+.+|+.... +..+.........|+|++++++|+++.. ++ .+.+++.
T Consensus 138 ~P~~lav--dp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSF--DPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEE--ETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEE--CCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 3567788 66 35556665555889999998643 3344334456889999999996666554 22 2333443
Q ss_pred CCeEE--eEEeccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcc-e-eee
Q 014114 289 TGKLL--GCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAA 363 (430)
Q Consensus 289 ~~~~~--~~~~~~~~~~v~~i~~s~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~-~~~ 363 (430)
.+... ..+.. ......++++| ++.++++-..++.|+.++...+.......... ......++|+|+|. + ++-
T Consensus 213 ~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~--~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 213 ESGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD--SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp GGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS--SSCCEEEEECTTSSEEEEEE
T ss_pred CCceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC--CCcceeEEEcCCCCEEEEEE
Confidence 23221 22222 33467889999 67766676678899999988665433221222 12247899999999 4 666
Q ss_pred cCCCcEEEecCCC
Q 014114 364 ADAPMLEIQNGND 376 (430)
Q Consensus 364 ~~d~~v~vw~~~~ 376 (430)
...+.|..++.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 6788899887653
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.015 Score=53.59 Aligned_cols=158 Identities=8% Similarity=-0.124 Sum_probs=95.1
Q ss_pred CceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEE-EeCCCcEE
Q 014114 163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~ 240 (430)
.....++++| ++.++++-..++.|+.+|..++.....+..... ...-..++| +|++++|+. -...+.|.
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-------~~~~~~ia~--dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-------KGSNFHIVW--HPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-------CSSCEEEEE--CTTSSEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-------CCCcccEEE--eCCCCEEEEEeCCCCEEE
Confidence 3456788999 666666656778899999987765222211110 022346888 899985544 45678899
Q ss_pred EEECCC--CCc-ceEEeeec---------------CCCeEEEEe---------eCCCCEEEEEcCCCCEEEEEccCCeEE
Q 014114 241 LYDTSA--QRR-PVMSFDFR---------------ETPIKAVAE---------EPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 241 ~wd~~~--~~~-~~~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~v~iwd~~~~~~~ 293 (430)
.++... +.. ....+.+. -.....+++ .+++.++++-...+.|+.++. ++...
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 988653 210 01122221 123567888 677777666667788999985 56443
Q ss_pred eEEeccc-----------------cCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCC
Q 014114 294 GCFIGKC-----------------SGSIRSIARH-PTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 294 ~~~~~~~-----------------~~~v~~i~~s-~~~~~l~s~~~d~~v~iwd~~ 331 (430)
++.+.. -.....|+++ +++.++++=..++.|+.++++
T Consensus 378 -t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 -TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 333210 1236788888 566655555566777777653
No 287
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.88 E-value=0.01 Score=51.24 Aligned_cols=236 Identities=12% Similarity=0.073 Sum_probs=140.3
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|..+.||.-. ...++|+|+++.+.+..+.... .|.--+|.+... +.--.+..++-|+++
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~~e---------~VvfWkWis~~~----------L~lVT~taVyHWs~~ 134 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---------DVTFWKWISLNT----------VALVTDNAVYHWSME 134 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---------CEEEEEECSSSE----------EEEEESSEEEEEESS
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceecCC---------ccEEEEecCCCe----------EEEEcCCcEEEEccc
Confidence 55666676654 6889999999988887776522 565555655332 223334579999986
Q ss_pred eecccccCCcceeeEEeecc---CCceEEEEEcCCCCEEEEec-------CCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
. ...++++++... ...|.....+++.++++..+ -.|.+.+|..+.+. .+.+++|...
T Consensus 135 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~----- 201 (365)
T 2xzh_A 135 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS----- 201 (365)
T ss_dssp T-------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEE-----
T ss_pred C-------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeee-----
Confidence 4 224677776432 34577777788888776543 23678899886543 3445554311
Q ss_pred cCcceeEeEEeeCCC-CCEEEEEeC---CCcEEEEECCCC---C-----cceEEeee---cCCCeEEEEeeCCCCEEEEE
Q 014114 212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---R-----RPVMSFDF---RETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~-~~~l~~~~~---dg~i~~wd~~~~---~-----~~~~~~~~---~~~~i~~~~~s~~~~~l~~~ 276 (430)
...+.....+. ..+|+.+.. .+.+++.++... . +.+..+-. ..+---++..++....++.-
T Consensus 202 ----F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 202 ----FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp ----EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred ----eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 11111100011 112332222 258899988543 1 11111111 13445677888888889999
Q ss_pred cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
+.-|.|++||+.++.+++.-+-. ...|...+-+....=++.....|.|.--.+.....
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS-~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred eCCcEEEEEEcccCcEEEEeccC-CCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 99999999999999998776654 55665555544444455555666666665554443
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.85 E-value=0.013 Score=51.49 Aligned_cols=236 Identities=10% Similarity=-0.073 Sum_probs=135.9
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+.+.. ..|+..|+...+....+... ....++.+-.... ..+++-...+.|..+++......
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~---------~~p~g~~~d~~~~-------~ly~~D~~~~~I~~~~~~g~~~~ 65 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNL---------RNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHGV 65 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSC---------SSEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCC---------CceEEEEEEeCCC-------EEEEEECCCCcEEEEECCCCCCC
Confidence 4555554 45888898776654444321 2456666654222 25556666788888876531100
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
. ....+.. ........+++++.+. ++++-...+.|.++++........+.... .....+++ +|
T Consensus 66 --~--~~~~~~~-~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~P~~iav--dp 129 (316)
T 1ijq_A 66 --S--SYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP 129 (316)
T ss_dssp ------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ET
T ss_pred --c--ccEEEEe-CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC---------CCcceEEe--CC
Confidence 0 0111121 1113457888886444 44555667899999987543322222111 34678888 67
Q ss_pred CCCEEEEEeC-C-CcEEEEECCCCCcceEEe-eecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEE-ec-c
Q 014114 226 DHRKFVAGTN-D-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF-IG-K 299 (430)
Q Consensus 226 ~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~-~~-~ 299 (430)
.+..|+.+.. . +.|..+++.... ...+ ...-.....|+++|++..|+.+. ..+.|..+|+.. .....+ .. .
T Consensus 130 ~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~ 206 (316)
T 1ijq_A 130 VHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEK 206 (316)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTT
T ss_pred CCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCC
Confidence 5555554443 3 688888886532 2222 22234678999998776666554 557899999864 322222 21 1
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 300 ~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
.......|++. .+.++++-...+.|..++..+++.+..+
T Consensus 207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 13456788885 3555666667789999998788776664
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.78 E-value=0.017 Score=50.76 Aligned_cols=234 Identities=8% Similarity=-0.042 Sum_probs=132.6
Q ss_pred eEEEEccCCeEEEeccCCCc--eeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
+|+.+. ...|+..++.... ....+... ....++.|..... ..+++-...+.|..+++....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~---------~~~~~ld~d~~~~-------~lyw~D~~~~~I~r~~~~g~~ 68 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGL---------EDAAAVDFVFSHG-------LIYWSDVSEEAIKRTEFNKTE 68 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEE---------EEEEEEEEEGGGT-------EEEEEETTTTEEEEEETTSSS
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCC---------CccEEEEEEeCCC-------EEEEEECCCCcEEEEEccCCC
Confidence 455554 4678889886553 11222211 1344555544222 245555666777777654321
Q ss_pred ccccCCcceeeEEeeccCCceEEEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEee
Q 014114 145 VSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
. ...+.. ..-.....+++.+. ++++++-...+.|.++++........+... ......+++
T Consensus 69 ~-------~~~~~~-~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~---------~~~P~giav-- 129 (318)
T 3sov_A 69 S-------VQNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------LDQPRAIAL-- 129 (318)
T ss_dssp C-------CCEEEE-ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEEEEE--
T ss_pred c-------eEEEEc-CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC---------CCCccEEEE--
Confidence 0 011111 11234567888874 445555566788999998654332222111 144678888
Q ss_pred CCCCCEEEEEe--CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccc
Q 014114 224 IDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 224 ~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~ 300 (430)
+|.+..|+.+. ..+.|..+++..... .......-.....|+++|++..|+.+. ..+.|..+|+........+...
T Consensus 130 dp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~- 207 (318)
T 3sov_A 130 DPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS- 207 (318)
T ss_dssp EGGGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-
Confidence 56555555554 357888888875332 222222234568999999776666554 5678999998633222222222
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 301 ~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
......+++.. +.++++-...+.|..++..+++....+
T Consensus 208 ~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 208 LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 45567888753 345566667789999998888876664
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.73 E-value=0.00023 Score=69.96 Aligned_cols=199 Identities=9% Similarity=-0.023 Sum_probs=113.3
Q ss_pred CceEEEEEcCCCCEEEEec-CCCeEEEEECCCC----ceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEEeCC
Q 014114 163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d 236 (430)
..+..++|++.+..|+.+. ..+.|+.+++... .....+... ......+++ .+ .++++++-...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~---------~~~P~glav--D~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDSVL 474 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC---------C--CCCEEC--CCSSSBCEECCTTT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC---------CCCcceEEE--EeeCCcEEEEeccC
Confidence 3466788988776666554 4578888888651 111111110 022445666 43 34455554567
Q ss_pred CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-C-CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCC
Q 014114 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 237 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 314 (430)
+.|.++++..... ...+.........|+++|.+.+|+.... . +.|..+++.. .....+........+.|+|+|++.
T Consensus 475 ~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 475 GTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSG 552 (699)
T ss_dssp SCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTC
T ss_pred CeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCC
Confidence 8899999876332 2222222345678899997666655443 2 6788877743 322223211134567899998765
Q ss_pred EE-EEEeCCCeEEEEeCCCCceeeEEee-ccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 315 II-ASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 315 ~l-~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
.| ++-+..+.|..+++.... ...+.. ...... ...+++..+.-+++....+.|..++...
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~-P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSS-CCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCC-ceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 44 555567789999986433 233211 111112 3566666664446667778888887643
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.69 E-value=0.029 Score=51.05 Aligned_cols=238 Identities=9% Similarity=-0.090 Sum_probs=138.3
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+.+. ...|+..++........+.. ...+..+.+..... ..+++-...+.|..+++......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~-------~lywsD~~~~~I~~~~~~g~~~~ 147 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHGV 147 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred eeEEec-cceeEEEccCCcceeEeccc---------cCcceEEeeeeccC-------ceEEEecCCCeEEEEEcccCCCC
Confidence 455544 46788888866554433322 13566677754322 24555566777777776432100
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.....+.. ........+++++ .++++++-...+.|.+.++........+.... .....+++ +|
T Consensus 148 ----~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~---------~~P~~iav--dp 211 (400)
T 3p5b_L 148 ----SSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP 211 (400)
T ss_dssp ----CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS---------CCEEEEEE--ET
T ss_pred ----CcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC---------CCcceEEE--ec
Confidence 00111111 1234567889987 45555555667889999987654433332211 34678888 67
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEecc-cc
Q 014114 226 DHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS 301 (430)
Q Consensus 226 ~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~ 301 (430)
.+.+|+.... .+.|...++..... .......-.....|++++++..|+.+. ..+.|..+|+........+... ..
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred ccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 5555555442 47899999875332 222232335678999998877776664 4577999998643322222221 12
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
....+|++. .+.++++-...+.|..+|..+|+.+..+
T Consensus 291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 445677773 3445566667788999998888877764
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.65 E-value=0.017 Score=50.95 Aligned_cols=195 Identities=9% Similarity=-0.038 Sum_probs=105.9
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEE-
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL- 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~- 241 (430)
+.+..+.+.+++..++++. ++.|.. ....++.-....... ...+..+.+ .+++.+++++. +|.+..
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~--------~~~~~~~~~--~~~~~~~~~g~-~G~~~~S 188 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEA--------IGVMRNLNR--SPSGEYVAVSS-RGSFYST 188 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSC--------CCCEEEEEE--CTTSCEEEEET-TSSEEEE
T ss_pred CCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCC--------CcceEEEEE--cCCCcEEEEEC-CCcEEEE
Confidence 3466777766666666554 454432 112232222221111 134778888 67777776654 455444
Q ss_pred EECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEecc---ccCcEEEEEEcCCCCEEEE
Q 014114 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s 318 (430)
.|-. +..-...-......+..+.+.++++.+++ +.+|.+++.+...++....+... ....+.++++.+++.++++
T Consensus 189 ~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 189 WEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp ECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred eCCC-CCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 3321 12111111234567889999998876554 46787777643324433322211 1245899999988776666
Q ss_pred EeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecC
Q 014114 319 CGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 319 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~ 374 (430)
+ .++.| ++....|+.-..+.........+.++.|.+++.+++++.+|.|.-++.
T Consensus 267 g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 267 G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 5 46766 344444544333211101112357788887777788888898877654
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.64 E-value=0.025 Score=48.90 Aligned_cols=190 Identities=10% Similarity=0.069 Sum_probs=119.6
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+.-++|..+.+|.-. ..++.++|+++.+.+....-. ..|.--.|. +.+.|+..+ +..|+-|++..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~----------e~VvfWkWi---s~~~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI---SLNTVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS----------SCEEEEEEC---SSSEEEEEE-SSEEEEEESST
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC----------CccEEEEec---CCCeEEEEc-CCcEEEEcccC
Confidence 455789888888665 668999999999988877654 347777785 345555554 45899999987
Q ss_pred CCcceEEeeecC----CCeEEEEeeCCCCEEEEEcC---C----CCEEEEEccCCeEEeEEecc----------------
Q 014114 247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGNG---S----GDLASVDIRTGKLLGCFIGK---------------- 299 (430)
Q Consensus 247 ~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~---d----g~v~iwd~~~~~~~~~~~~~---------------- 299 (430)
...|...+..|. ..|..-..+++.++++..+- + |.+.+|..+.+. -+.+.+|
T Consensus 136 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 136 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEES 214 (365)
T ss_dssp TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCE
T ss_pred CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCc
Confidence 667888887763 45666777888887765432 2 557777765421 1111111
Q ss_pred ---------------------c----------------------cCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 300 ---------------------C----------------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 300 ---------------------~----------------------~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
+ .+-..++..++.-..+..-+.-|.|++||++++.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 0 111223344444456777788899999999999999
Q ss_pred eEEeeccccceeEEEeeec-CCcceeeecCCCcEEEecCC
Q 014114 337 SAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s-~~g~~~~~~~d~~v~vw~~~ 375 (430)
..-.+ ..+. |...+.+ ..+-++.....|.|.--..+
T Consensus 295 ~~nrI--S~d~-iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 295 YMNRI--SGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEEC--CSSC-EEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred EEecc--CCCc-eEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 87432 2233 3433433 33444666666766544433
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.63 E-value=0.0059 Score=53.13 Aligned_cols=162 Identities=12% Similarity=0.106 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCEEEEec-CCCeEEEEECCCCceeee-ecCCC--CCCCCcccCcceeEeEEee-CCCCCEEEEEe-----
Q 014114 165 IAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPP--KNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT----- 234 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~----- 234 (430)
..++.|++....|+.++ ..++|..||...+..... +.... .. ....+..+.+.. .|++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~-----~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGD-----GEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSC-----CSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCC-----CcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 45678887555555555 789999999976543322 22100 00 012356777710 25666766543
Q ss_pred --------CCCcEEEEECC---CCCcceEEeee-------------cCCCeEEEEeeCCCCEEEEEcCC-CCEEEEEccC
Q 014114 235 --------NDHQVRLYDTS---AQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT 289 (430)
Q Consensus 235 --------~dg~i~~wd~~---~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~d-g~v~iwd~~~ 289 (430)
.+..|..||+. +++. +..... .......++..++|+..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 26779999998 6553 433331 11247889999999999988887 8777777653
Q ss_pred CeEEeEEe-c----cccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 014114 290 GKLLGCFI-G----KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 290 ~~~~~~~~-~----~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~ 333 (430)
+.+..+. . ......+.|+++|++..|++....|.+..+|+.+.
T Consensus 169 -~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 169 -KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp -CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred -CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 3222221 1 11224679999999999888877999999998843
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.59 E-value=0.039 Score=49.71 Aligned_cols=237 Identities=12% Similarity=0.074 Sum_probs=144.9
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|..+.||.-. ..++.|+|+++.+.+..+.... .|.--.|.+.. .+.--.+..++-|+++
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e---------~VvfWkWis~~----------~l~lVT~taVyHWsi~ 133 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---------DVTFWKWISLN----------TVALVTDNAVYHWSME 133 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---------CCCEEEEEETT----------EEEEECSSEEEEEESS
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---------CceEEEecCCC----------eEEEEcCCeeEEeccc
Confidence 55566677654 6889999999888887776532 45546666543 2333345679999986
Q ss_pred eecccccCCcceeeEEeecc---CCceEEEEEcCCCCEEEEec-------CCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
. ...++++++... +..|.....+++.++++..+ -.|.+.+|..+.+. .+.+++|.
T Consensus 134 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha------- 198 (494)
T 1bpo_A 134 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA------- 198 (494)
T ss_dssp S-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE-------
T ss_pred C-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee-------
Confidence 4 224677776432 34577777888888877443 24678899886543 34455553
Q ss_pred cCcceeEeEEeeCCC-CCEEEEEeC---CCcEEEEECCCC--------CcceEEeee---cCCCeEEEEeeCCCCEEEEE
Q 014114 212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ--------RRPVMSFDF---RETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~-~~~l~~~~~---dg~i~~wd~~~~--------~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~ 276 (430)
.....+.....+. ...|+.+.. .+.+++.++... ++.+..+-. ..+--.++..++....++.-
T Consensus 199 --a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 199 --ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp --EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred --eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 1111111100000 123333333 278999998543 111111111 13445678888888889999
Q ss_pred cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
+.-|.|++||+.++.+++.-+-. ...|...+-+....=++.....|.|.--.+.....+
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ecCceEEEEecccceeeeeeccc-CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 99999999999999998876654 566666666555555666667777776666554433
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.48 E-value=0.0061 Score=53.03 Aligned_cols=158 Identities=8% Similarity=0.013 Sum_probs=104.2
Q ss_pred ceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCCCcceEEeee----cC--CCeEEEEe---eCCCCEEEEEc-------
Q 014114 215 WFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDF----RE--TPIKAVAE---EPDSFNIYIGN------- 277 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~----~~--~~i~~~~~---s~~~~~l~~~~------- 277 (430)
...++.| ++....|+.++ ..++|..||...+......+.. .. ..+..|.| .|+++++++..
T Consensus 14 yPE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCSCEEE--ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CCcCccC--cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3557788 45445555555 7899999999754321112221 11 13578999 68887777543
Q ss_pred ------CCCCEEEEEcc---CCeEEeEEe--ccc----------cCcEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCce
Q 014114 278 ------GSGDLASVDIR---TGKLLGCFI--GKC----------SGSIRSIARHPTLPIIASCGLD-SYLRFWDIKTRQL 335 (430)
Q Consensus 278 ------~dg~v~iwd~~---~~~~~~~~~--~~~----------~~~v~~i~~s~~~~~l~s~~~d-~~v~iwd~~~~~~ 335 (430)
.+..|..||+. +++.+.... ... ......++..++|+..++++.- +.|...+.. |+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence 25679999998 787765554 110 1358899999999999999988 888888754 444
Q ss_pred eeEEeeccc---cceeEEEeeecCCcce-eeecCCCcEEEecCC
Q 014114 336 LSAVFLKQH---LNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 336 ~~~~~~~~~---~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~ 375 (430)
+..+.+... ...-.+.++++|+|.. ++....+.|..+|..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 443332221 1111468899999988 555558999999876
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.47 E-value=0.088 Score=50.95 Aligned_cols=221 Identities=8% Similarity=-0.011 Sum_probs=131.7
Q ss_pred ccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEE-ecCCCeEEEEECCCCceeeeecCCCCCCC
Q 014114 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 130 ~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 208 (430)
+..+.|...++.... ......+..-..+..++|++.+..|+. -..++.|..+++........+....
T Consensus 12 s~~~~I~~i~l~~~~--------~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~---- 79 (628)
T 4a0p_A 12 SRRADIRRISLETNN--------NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL---- 79 (628)
T ss_dssp EETTEEEEEESSCTT--------CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC----
T ss_pred EeCCcEEEEECCCCC--------cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC----
Confidence 355677777765321 111111122245789999986666654 4567889999987543333332211
Q ss_pred CcccCcceeEeEEeeCCC-CCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC--CCCEEEE
Q 014114 209 GIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASV 285 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~v~iw 285 (430)
.....+++ ++. ++++++-...+.|.+.++..... ...+...-.....|++.|...+|+.... .+.|...
T Consensus 80 -----~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 80 -----DYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp -----SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred -----CCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 23556777 444 44555555678899999875432 2222233346789999986556655542 4677777
Q ss_pred EccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeec
Q 014114 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAA 364 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~ 364 (430)
++.... ...+... ....+.|++++++..|+.+. ..+.|..+|+..... .. +...... ..++++..+.-+++-.
T Consensus 152 ~~dG~~-~~~l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v--~~~~l~~-P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 152 AMDGSE-RTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV--IADDLPH-PFGLTQYQDYIYWTDW 225 (628)
T ss_dssp ETTSCS-CEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EEECCSC-EEEEEEETTEEEEEET
T ss_pred eCCCCc-eEEEECC-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE--eeccCCC-ceEEEEECCEEEEecC
Confidence 775433 2233233 56789999999876665554 667899999865433 22 2222223 3677776643336666
Q ss_pred CCCcEEEecCCC
Q 014114 365 DAPMLEIQNGND 376 (430)
Q Consensus 365 ~d~~v~vw~~~~ 376 (430)
..+.|...+...
T Consensus 226 ~~~~I~~~dk~t 237 (628)
T 4a0p_A 226 SRRSIERANKTS 237 (628)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCEEEEEECCC
Confidence 678888877644
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.46 E-value=0.091 Score=50.76 Aligned_cols=198 Identities=10% Similarity=-0.019 Sum_probs=115.3
Q ss_pred CceEEEEEcCCCCEEEEe-cCCCeEEEEECCCCce-eeeecCCCCCCCCcccCcceeEeEEeeCCCCC-EEEEEeCCCcE
Q 014114 163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i 239 (430)
.....++|++.+..|+.+ ...+.|..+++..... ...+.... .....+++ ++.+. ++++-...+.|
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~---------~~P~GlAv--D~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL---------LSPDGLAC--DWLGEKLYWTDSETNRI 108 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSC---------SCEEEEEE--ETTTTEEEEEETTTTEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC---------CCcCeEEE--EecCCEEEEEeCCCCEE
Confidence 457789999866666654 4467888888865432 11222111 34678888 66444 55555567899
Q ss_pred EEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC--CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEE
Q 014114 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 317 (430)
.+.++..... ...+...-.....|++.|.+.+|+.... .+.|...++. |.....+........+.|++++++..|+
T Consensus 109 ~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 109 EVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp EEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred EEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEE
Confidence 9999986432 2222233345778999997666655543 3567666764 3333333221145689999999766665
Q ss_pred EE-eCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 318 s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
.+ ...+.|..+|+.... ...+ ..+.... ..++++..+.-+++-...+.|...+...
T Consensus 187 ~aD~~~~~I~~~~~dG~~-~~~~-~~~~~~~-P~gi~~~~~~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTN-RQAV-VKGSLPH-PFALTLFEDILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp EEETTTCCEEEESSSCCE-EC-----------CCCEEESSSEEEEECTTTCSEEEEESSS
T ss_pred EEeCCCCeEEEecCCCCc-cEEE-EeCCCCC-ceEEEEeCCEEEEecCCCCEEEEEECCC
Confidence 55 456789999986433 3332 2222222 3567777663336666677787777654
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.38 E-value=0.0017 Score=63.90 Aligned_cols=161 Identities=9% Similarity=-0.105 Sum_probs=92.7
Q ss_pred eEEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC--CCcEEE
Q 014114 165 IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQVRL 241 (430)
Q Consensus 165 i~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~~ 241 (430)
...|++.+.+ +++++-...+.|.++++........+.... .....+++ +|.+.+|+.+.. .+.|..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------~~P~giav--Dp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------SKPRAIVV--DPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------CCCCCEEC--CSSSSCCEECCCSSSCCEEB
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------CCcceEEE--ccCCCcEEEcccCCCCeEEE
Confidence 4567887544 444444567789999987554333322211 23456677 665555544432 267888
Q ss_pred EECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCeEEeEEecc--ccCcEEEEEEcCCCCEEEE
Q 014114 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~i~~s~~~~~l~s 318 (430)
+++..... ...+...-.....|+|+|++..|+.+ ...+.|..+++.... ...+... .......|++..+ .++++
T Consensus 524 ~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywt 600 (699)
T 1n7d_A 524 GGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWT 600 (699)
T ss_dssp CCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred EeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEE
Confidence 88764322 22222222346789999876555544 456789999986432 2222210 0223455666444 45555
Q ss_pred EeCCCeEEEEeCCCCceeeEE
Q 014114 319 CGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 319 ~~~d~~v~iwd~~~~~~~~~~ 339 (430)
....+.|..++..+++.+..+
T Consensus 601 d~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 601 DIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CSTTTCEEEEETTTEEEEECC
T ss_pred eCCCCeEEEEEccCCCceEEe
Confidence 556788999998888877764
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.089 Score=48.85 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=93.0
Q ss_pred ceEEEEEcC-CCCEEEEecCCCeEEEEECC-------CCce-----------eee-ecCCCCCCCCcccCcceeEeEEee
Q 014114 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLD-------KCEK-----------IWT-AKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~-------~~~~-----------~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
....++++| ++.++++-..++.|+.+|+. ++.. ... +... ...+...++|
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~--------~~~~p~~ia~-- 317 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA--------DPSWEFQIFI-- 317 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS--------SSSCCEEEEE--
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC--------CCCCceEEEE--
Confidence 345778899 45555566778889999987 4443 111 1111 1144678999
Q ss_pred CCCCCEEE-EEeCCCcEEEEECCCCCcce---EEeeec---C------------CCeE-EEEee-------CCCCEEEEE
Q 014114 224 IDDHRKFV-AGTNDHQVRLYDTSAQRRPV---MSFDFR---E------------TPIK-AVAEE-------PDSFNIYIG 276 (430)
Q Consensus 224 ~~~~~~l~-~~~~dg~i~~wd~~~~~~~~---~~~~~~---~------------~~i~-~~~~s-------~~~~~l~~~ 276 (430)
+|++++|+ +-+....|+.++.......+ ..+.+. . .... .++.. +++.++++=
T Consensus 318 ~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD 397 (496)
T 3kya_A 318 HPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVD 397 (496)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred cCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEE
Confidence 89999544 44567788886654311111 222221 0 1233 44554 456666666
Q ss_pred cCCCCEEEEEccCCeEEeEEeccc-----------------------cCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGKC-----------------------SGSIRSIARHPT-LPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~-----------------------~~~v~~i~~s~~-~~~l~s~~~d~~v~iwd~~~ 332 (430)
.....|+.++. ++. +.++.+.. -.....|+++++ +.++++=..+..|+.+++..
T Consensus 398 ~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 398 RLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp GGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 67788999984 564 33443210 123677888886 66556656677888888766
Q ss_pred CceeeE
Q 014114 333 RQLLSA 338 (430)
Q Consensus 333 ~~~~~~ 338 (430)
...++.
T Consensus 476 ~~~~~~ 481 (496)
T 3kya_A 476 EENVAG 481 (496)
T ss_dssp CC----
T ss_pred Cccccc
Confidence 555443
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.37 E-value=0.076 Score=47.84 Aligned_cols=190 Identities=10% Similarity=0.064 Sum_probs=120.1
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+.-++|..+.++.-. ..++.+||+++.+.+...... ..|.--.|. +.+.|+..+ +..|+-|++..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~----------e~VvfWkWi---s~~~l~lVT-~taVyHWsi~~ 134 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI---SLNTVALVT-DNAVYHWSMEG 134 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS----------SCCCEEEEE---ETTEEEEEC-SSEEEEEESSS
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC----------CCceEEEec---CCCeEEEEc-CCeeEEecccC
Confidence 556788888887654 678999999999988877654 336666775 344555554 56899999987
Q ss_pred CCcceEEeeecC----CCeEEEEeeCCCCEEEEEcC-------CCCEEEEEccCCeEEeEEecc----------------
Q 014114 247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTGKLLGCFIGK---------------- 299 (430)
Q Consensus 247 ~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~~---------------- 299 (430)
...|+..+..|. ..|..-..+++.++++..+- .|.+.+|..+.+. -+.+.+|
T Consensus 135 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEES 213 (494)
T ss_dssp SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEE
T ss_pred CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCc
Confidence 666888887763 46777777888888765431 2556777765321 1111111
Q ss_pred -------------------------------------------ccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 300 -------------------------------------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 300 -------------------------------------------~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
..+-..++..++.-..+..-..-|.|++||++++.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 0112234444555557777788899999999999999
Q ss_pred eEEeeccccceeEEEeeec-CCcceeeecCCCcEEEecCC
Q 014114 337 SAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~s-~~g~~~~~~~d~~v~vw~~~ 375 (430)
..-.+ ..+. |...+.. ..+-++.....|.|.--..+
T Consensus 294 ~~nrI--s~~~-iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 294 YMNRI--SGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEEEC--CSSC-EEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred eeecc--cCCc-eEEecccCCCCcEEEEccCceEEEEEEc
Confidence 87432 2223 3333333 33444666666666544443
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.33 E-value=0.16 Score=50.54 Aligned_cols=238 Identities=9% Similarity=-0.082 Sum_probs=132.0
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+.+.. ..|+..++........+... ..+.++.+..... ..+++-...+.|..+++......
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~~~---------~~~~gl~~d~~~~-------~lY~sD~~~~~I~~~~l~g~~~~ 459 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIPNL---------RNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHGV 459 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEECSC---------SSEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred ccccccc-cceeEeeccCCcceeeecCC---------CceEEEeecccCC-------eeEEeeccceeEEEEeccCCCCC
Confidence 4444433 45777777655443333221 2455666644222 24555566677777776532110
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
. ....+.. ........|++++.+..|+ +-...+.|.+.++........+.... .....|++ +|
T Consensus 460 --~--~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l---------~~P~gIaV--Dp 523 (791)
T 3m0c_C 460 --S--SYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP 523 (791)
T ss_dssp ------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ET
T ss_pred --c--ceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC---------CCcceEEE--ec
Confidence 0 0111111 1224566888887665444 55667899999987554333332211 34778888 67
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEecc-cc
Q 014114 226 DHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS 301 (430)
Q Consensus 226 ~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~ 301 (430)
...+|+.+.. .+.|...++..... ...+...-.....|++++.+..|+.+. ..+.|..+++........+... .-
T Consensus 524 ~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l 602 (791)
T 3m0c_C 524 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 602 (791)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred CCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCcc
Confidence 6555555442 36799999875332 223333335788999998776666664 4567999998543333333321 12
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEE
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 339 (430)
....+|++..+ .++++-...+.|...|..+|+.+..+
T Consensus 603 ~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 603 AHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 34567776433 44455556688988888777666554
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.013 Score=54.40 Aligned_cols=154 Identities=8% Similarity=-0.006 Sum_probs=93.8
Q ss_pred ceeEeEEeeCC-C-CCEEEEEeCCCcEEEEECCCCCcceEEeeec----CCCeEEEEe-------eCCCCEEEEEcCCC-
Q 014114 215 WFTSAAFLSID-D-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIKAVAE-------EPDSFNIYIGNGSG- 280 (430)
Q Consensus 215 ~v~~~~~~~~~-~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~~i~~~~~-------s~~~~~l~~~~~dg- 280 (430)
....|+| +| + ++++++-...+.|++.|+..+. +..+..- ......|+| +++++.|+++...+
T Consensus 140 ~p~~la~--dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAF--DPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEE--ETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred CCCEEEE--ccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 3567888 66 2 4444444445779999988743 3333221 125889999 99999777665543
Q ss_pred C------EEEEEccC-CeEE-----eEEeccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC-------CCce-----
Q 014114 281 D------LASVDIRT-GKLL-----GCFIGKCSGSIRSIARHPT-LPIIASCGLDSYLRFWDIK-------TRQL----- 335 (430)
Q Consensus 281 ~------v~iwd~~~-~~~~-----~~~~~~~~~~v~~i~~s~~-~~~l~s~~~d~~v~iwd~~-------~~~~----- 335 (430)
. |.+++... +... ..+.. -.....++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 2 66666433 2221 22222 224567889995 4555566678899999997 5553
Q ss_pred ------eeEEeeccccceeEEEeeecCCcce--eeecCCCcEEEecCC
Q 014114 336 ------LSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 336 ------~~~~~~~~~~~~~i~~~~~s~~g~~--~~~~~d~~v~vw~~~ 375 (430)
+..+... ......+.++|+|+|.. ++-.....|+.++.+
T Consensus 294 ~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 294 KNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1222111 11233478999999984 666677788886654
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.30 E-value=0.083 Score=46.85 Aligned_cols=199 Identities=7% Similarity=-0.014 Sum_probs=106.2
Q ss_pred EEEEEcCCCCEEEEe------------cCCCeEEEEECCCC-ceeeeecCCCC-CCCCcccCcceeEeEEeeCCCCC-EE
Q 014114 166 AFSKVDISEKFSLFG------------GKGVEVNVWDLDKC-EKIWTAKPPPK-NSLGIFTPTWFTSAAFLSIDDHR-KF 230 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~------------~~dg~v~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~-~l 230 (430)
..+...|++..++++ ..+|.|.++|+.+. .....+..... .... .-....+.+....++. +|
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~---~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDIS---SFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGG---GCCEEEEEEEECTTCCEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcC---ceeeeeeEEEECCCCcEEE
Confidence 455566766554444 26899999999742 11222221100 0000 1235566664333443 34
Q ss_pred EEEe-C--CCcEEEEECCCCCcc---eEEeeec-CCCeEEEEeeCCCCEEEEEcC-----------------CCCEEEEE
Q 014114 231 VAGT-N--DHQVRLYDTSAQRRP---VMSFDFR-ETPIKAVAEEPDSFNIYIGNG-----------------SGDLASVD 286 (430)
Q Consensus 231 ~~~~-~--dg~i~~wd~~~~~~~---~~~~~~~-~~~i~~~~~s~~~~~l~~~~~-----------------dg~v~iwd 286 (430)
+++. . +..|.+|++...... +..+.+. -...+.+.+.++|.+.++... .|.|..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4442 2 467788877653321 2223222 235788999999987776541 24455555
Q ss_pred ccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CceeeEEeeccccceeEEEeeecC-Ccce-ee
Q 014114 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NA 362 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d~~v~iwd~~~-~~~~~~~~~~~~~~~~i~~~~~s~-~g~~-~~ 362 (430)
. ++......+ -...+.|+|+||++.|+.+. ..+.|..|++.. ++....-.+ ......-.+++.+ +|.+ ++
T Consensus 210 ~--~~~~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 P--NDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp T--TCCEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEE
T ss_pred C--CeEEEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEE
Confidence 4 332222222 45679999999998776664 678899999863 332211112 1123357778888 5888 54
Q ss_pred ecCC-CcEEEec
Q 014114 363 AADA-PMLEIQN 373 (430)
Q Consensus 363 ~~~d-~~v~vw~ 373 (430)
+..+ +.|..|+
T Consensus 284 ~~~~g~~v~~~~ 295 (355)
T 3sre_A 284 CHPNGMRIFFYD 295 (355)
T ss_dssp EESCHHHHHSCC
T ss_pred ecCCceEEEEEC
Confidence 4323 3444443
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.26 E-value=0.036 Score=49.21 Aligned_cols=136 Identities=10% Similarity=0.062 Sum_probs=81.4
Q ss_pred CCCcEEEEECCCCCcceEEee--e-----cCCCeEEEEeeC--CCC-EEEEE-cC--CCCEEEEEccCC----eEEeEEe
Q 014114 235 NDHQVRLYDTSAQRRPVMSFD--F-----RETPIKAVAEEP--DSF-NIYIG-NG--SGDLASVDIRTG----KLLGCFI 297 (430)
Q Consensus 235 ~dg~i~~wd~~~~~~~~~~~~--~-----~~~~i~~~~~s~--~~~-~l~~~-~~--dg~v~iwd~~~~----~~~~~~~ 297 (430)
.+|.|.++|+.+.......+. + .......+.+.+ ++. +|+++ .. +..|.+|++... ..+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999974221122222 2 123566777755 353 34443 33 456888876543 2344455
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 298 GKCSGSIRSIARHPTLPIIASCGL-----------------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 298 ~~~~~~v~~i~~s~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
+..-...+.+.+.++|.+.++... .|.|+.+|. ++ +..+ .. ... ..+.++|+||++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~-~~-~l~-~pNGia~spDg~~ 234 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVV-AE-GFD-FANGINISPDGKY 234 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEE-EE-EES-SEEEEEECTTSSE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEe-ec-CCc-ccCcceECCCCCE
Confidence 443457899999999988877641 245555654 32 2221 21 212 2488999999976
Q ss_pred --eeecCCCcEEEecCCC
Q 014114 361 --NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 --~~~~~d~~v~vw~~~~ 376 (430)
++-+..+.|..|+...
T Consensus 235 lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEGGGTEEEEEEECT
T ss_pred EEEEeCCCCeEEEEEECC
Confidence 5666678899998764
No 306
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0014 Score=57.74 Aligned_cols=150 Identities=9% Similarity=0.119 Sum_probs=87.8
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC-CCCEEEEE-eCCCcEEEEECCCCCcceE
Q 014114 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAG-TNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 175 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~-~~dg~i~~wd~~~~~~~~~ 252 (430)
..+++++.||.|+-+|..+|+..+.+..... .++....-...+ ++..++.. +.||.|+.++..++.. ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~--------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF--------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS--------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc--------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Ee
Confidence 5788899999999999999999999875410 011111100011 22333333 5899999999887643 22
Q ss_pred Eeee----cCCCeEE---EEe-e----CCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCc------EEEEEEc----
Q 014114 253 SFDF----RETPIKA---VAE-E----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS------IRSIARH---- 310 (430)
Q Consensus 253 ~~~~----~~~~i~~---~~~-s----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------v~~i~~s---- 310 (430)
.+.. ...++.. ..+ . ..+..+++|+.+|.+...|+++|+.+.++....... ..|....
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 2221 1222321 000 0 135588999999999999999999999887531111 1111111
Q ss_pred -CCCCEEEEEeCCCeEEEEeCCCCc
Q 014114 311 -PTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 311 -~~~~~l~s~~~d~~v~iwd~~~~~ 334 (430)
..+..|+.+..+..+.+.+ ++|+
T Consensus 162 d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 162 QECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC
T ss_pred ccCCCeEEEecceEEEEEEC-CCCC
Confidence 1235677777777777777 4554
No 307
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.012 Score=51.76 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=103.4
Q ss_pred ceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE--ccCCeeEEEEeeee
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVT 143 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~g~i~v~~~~~~ 143 (430)
.++++++.||.|.-+|..+|+.+..++.-. ..++..... ... ..++.++.. +.||.+..++....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-------~~p~~~~~~--~~~----~~~~~~~vv~p~~dG~l~a~~~~~G 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-------FQPLIEIQE--PSR----LETYETLIIEPFGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-------SCCSEECCC--SCT----TTSSEEEEECCSTTTEEEEEETTTE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-------cCCcEEecC--Ccc----ccCCcEEEEEECCCCEEEEEECCCC
Confidence 468999999999999999999999887620 011211100 000 011233333 57888877775321
Q ss_pred cccccCCcceeeEEeeccCCceEE--EEEc-----------CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCc
Q 014114 144 KVSAESSCSTVKSWNVCASGTIAF--SKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~--~~~~-----------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 210 (430)
...|.......+.. +... ..+..+++|+.+|.+...|+.+|+.++.+........
T Consensus 78 ----------~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~-- 145 (339)
T 2be1_A 78 ----------LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY-- 145 (339)
T ss_dssp ----------EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred ----------cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc--
Confidence 22243322111100 1110 1456888999999999999999999999875431100
Q ss_pred ccCcceeEeE---EeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeee---cCCCeE-----EEEeeCCCCEEEEEcCC
Q 014114 211 FTPTWFTSAA---FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIK-----AVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 211 ~~~~~v~~~~---~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~i~-----~~~~s~~~~~l~~~~~d 279 (430)
.......|.. +.....+..|+.+..+..+.+.+ ++++ +..+.. ....+. .-..+.++.+ +.++.|
T Consensus 146 ~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~--~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~d 221 (339)
T 2be1_A 146 FGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA--SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRD 221 (339)
T ss_dssp -------------------CCEEEEEEEEEECEECC-TTSC--CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETT
T ss_pred ccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC--eEEEecccccccccccccccccccccCCcE-EEECCC
Confidence 0000000000 00001234566666666666665 3332 111110 000000 0001234555 457889
Q ss_pred CCEEEEEccCCeEEe
Q 014114 280 GDLASVDIRTGKLLG 294 (430)
Q Consensus 280 g~v~iwd~~~~~~~~ 294 (430)
|.|.-+|..+|+.+.
T Consensus 222 g~v~A~d~~~G~~~W 236 (339)
T 2be1_A 222 KSLLASDLDFRIARW 236 (339)
T ss_dssp TEEEEECSTTCCEEE
T ss_pred CEEEEEECCCCcEEE
Confidence 999999998888765
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.92 E-value=0.19 Score=45.30 Aligned_cols=145 Identities=9% Similarity=0.017 Sum_probs=91.2
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc---
Q 014114 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--- 249 (430)
Q Consensus 173 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--- 249 (430)
++..++++- ++.||.-++......+.+.....-.+ ..+..+.. +|+|++||..+ +..|.|..+..+..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f-----~~i~qlvl--SpsG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVL-----DDTFHVIS--STSGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCC-----CTTCEEEE--CTTSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCccccc-----CceeEEEE--CCCCCEEEEec-CCeEEEEEecCccccCc
Confidence 444444332 35777777764333333332210000 23566777 89999999875 55888888873220
Q ss_pred ------c--eEEeee------cCCCeEEEEeeCCC---CEEEEEcCCCCEEEEEccCC--eEEeEEe---------cccc
Q 014114 250 ------P--VMSFDF------RETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTG--KLLGCFI---------GKCS 301 (430)
Q Consensus 250 ------~--~~~~~~------~~~~i~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~--~~~~~~~---------~~~~ 301 (430)
+ .+.+.. ...+|..+.|+|-+ ..|++-..|+.|++||+... ++. .+. .. .
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~-~ 179 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR-V 179 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS-C
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc-c
Confidence 1 122322 24679999999954 58999999999999999752 122 222 11 3
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 014114 302 GSIRSIARHPTLPIIASCG--LDSYLRFW 328 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~--~d~~v~iw 328 (430)
..|.+++|.+++-.|...+ ..|.|+-.
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 6789999999887676655 77888754
No 309
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.77 E-value=0.25 Score=43.37 Aligned_cols=190 Identities=9% Similarity=-0.035 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
..+..+.|++ +..++ ++..+.|+. ....++.-..+..... .+..+..+.+ .+++..++++ .++.|..
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~------~~~~~~~i~~--~~~~~~~~~~-~~g~v~~- 146 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPK------LPGSPRLIKA--LGNGSAEMIT-NVGAIYR- 146 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTT------CSSCEEEEEE--EETTEEEEEE-TTCCEEE-
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccC------CCCCeEEEEE--ECCCCEEEEe-CCccEEE-
Confidence 3577788876 44444 455564443 2222332222111100 0123566666 3455555554 5665432
Q ss_pred ECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEE-EEc--cCCeEEeEEeccccCcEEEEEEcCCCCEEEEE
Q 014114 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS-VDI--RTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i-wd~--~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
....++.-..........+..+++.|++.+++++. +|.+.. .|- .+.+.+. ... ...+..+.+.+++.++ .+
T Consensus 147 S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~-~~~~~~~~~~~~g~~~-~~ 221 (327)
T 2xbg_A 147 TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTT-SRRLHNMGFTPDGRLW-MI 221 (327)
T ss_dssp ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCS-SSCEEEEEECTTSCEE-EE
T ss_pred EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCC-CCccceeEECCCCCEE-EE
Confidence 12223322222234456789999999988877764 444443 342 2333332 122 5678999999998765 45
Q ss_pred eCCCeEEEEeCCCCceeeEEeecc-ccceeEEEeeecCCcceeeecCCCcEE
Q 014114 320 GLDSYLRFWDIKTRQLLSAVFLKQ-HLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 320 ~~d~~v~iwd~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~~~~~~d~~v~ 370 (430)
+.+|.+++.+...++.-..+.... .....+.++.+.+++.+++++.++.+.
T Consensus 222 ~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 222 VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 567888877433344333221110 011225888999988885555567664
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.75 E-value=0.084 Score=47.49 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=81.8
Q ss_pred eeeEEeecc---CCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee------------eeecCCCCCCCCcccCccee
Q 014114 153 TVKSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------------WTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 153 ~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~v~ 217 (430)
.-+.++... -..|..+..+|+|.+||..+.. .|.|..+..+... +.+.-.. ........|.
T Consensus 53 ~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~---~~~~~~s~I~ 128 (452)
T 3pbp_A 53 LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE---EEVGPKSSIK 128 (452)
T ss_dssp SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG---CC--CCCCEE
T ss_pred cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCC---cccCCCCcee
Confidence 344555442 2367889999999999988665 7999888743211 1111110 0111236799
Q ss_pred EeEEee-CCCCCEEEEEeCCCcEEEEECCC-CCcceEEee---------ecCCCeEEEEeeCCCCEEEEEc--CCCCEEE
Q 014114 218 SAAFLS-IDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGN--GSGDLAS 284 (430)
Q Consensus 218 ~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~~~~--~dg~v~i 284 (430)
.+.|+| ...+..|++-..|+.|++||+.. ...|. .+. .....|.+++|.+++-.|++.+ ..|.|+-
T Consensus 129 qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 129 KVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999943 12345899999999999999985 22333 222 1235788999999887777755 7787764
Q ss_pred E
Q 014114 285 V 285 (430)
Q Consensus 285 w 285 (430)
.
T Consensus 208 l 208 (452)
T 3pbp_A 208 F 208 (452)
T ss_dssp E
T ss_pred E
Confidence 3
No 311
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.65 E-value=0.023 Score=46.09 Aligned_cols=148 Identities=5% Similarity=-0.106 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCC-CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~w 242 (430)
.+..++|+|++.+.++ .+|.++-.+..++....-+... ....... ....++.| .|++.+.++ .||.|+-+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw---~~F~a~~f--D~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW---NQFQFLFF--DPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG---GGCSEEEE--CTTSCEEEE--ETTEEEEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc---ccceEEEE--CCCCCEEEe--CCCEEEEe
Confidence 5679999998886666 7778777776542211000000 0000000 12467777 889988777 56999888
Q ss_pred ECCCCCcc------eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe------EEeEEe-ccccCcEEEEEE
Q 014114 243 DTSAQRRP------VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFI-GKCSGSIRSIAR 309 (430)
Q Consensus 243 d~~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~-~~~~~~v~~i~~ 309 (430)
+..+.... ...-...-..+..|.|.|+|.+.++. |+.++-....+.. ....+- .. -...+-+.|
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f 189 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFF 189 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEE
Confidence 76432210 11111112467999999999777766 7765433222111 011111 11 223455678
Q ss_pred cCCCCEEEEEeCCCeE
Q 014114 310 HPTLPIIASCGLDSYL 325 (430)
Q Consensus 310 s~~~~~l~s~~~d~~v 325 (430)
.+++.+.+.. ++.+
T Consensus 190 ~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 190 SSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CTTSCEEEEE--TTEE
T ss_pred CCCCcEEEEe--CCeE
Confidence 8888766665 6633
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.60 E-value=0.57 Score=45.21 Aligned_cols=235 Identities=8% Similarity=-0.071 Sum_probs=123.5
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+-+ ....|+..++........+.. +......++.+..... ..+++-...+.|..+++....
T Consensus 11 ~~~~~-~~~~I~~i~~~~~~~~~~~~~-------~~~~~~~~ld~~~~~~-------~ly~sD~~~~~I~r~~~~g~~-- 73 (619)
T 3s94_A 11 LLLYA-NRRDLRLVDATNGKENATIVV-------GGLEDAAAVDFVFSHG-------LIYWSDVSEEAIKRTEFNKTE-- 73 (619)
T ss_dssp CEEEE-CSSBEEEECCC---------C-------BCCSCEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred eEEEe-ccccEEEEeCCCCcceEEEEE-------cCCCceEEEEEEeCCC-------EEEEEECCCCeEEEEEccCCC--
Confidence 34444 346788888864321111110 1112455666654322 244455556777777664321
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
....+.. ..-.....+++++.+. ++++-...+.|.+.++........+.... .....+++ +|
T Consensus 74 -----~~~~v~~-~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------~~P~~Iav--dp 136 (619)
T 3s94_A 74 -----SVQNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL--DP 136 (619)
T ss_dssp ------CEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCCEEE--ET
T ss_pred -----ceEEEEe-CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------CCCceEEE--ec
Confidence 0011111 1124678899998555 44455667899999987543322222111 33567888 66
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEE-cCCCCEEEEEccCCeEEeEEeccccC
Q 014114 226 DHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 226 ~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
.+..|+.+.. .+.|...++..... .......-.....|++++++..|+.+ ...+.|..+|+..........+. ..
T Consensus 137 ~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~ 214 (619)
T 3s94_A 137 SSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LP 214 (619)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred CCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CC
Confidence 6555554442 46777777765332 22222233467899999876666555 45678999998654333222212 22
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 338 (430)
...+|++..+ .++++-...+.|...|..+++....
T Consensus 215 ~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 215 HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp -CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 3456777655 4444444677899999887765443
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.59 E-value=0.26 Score=42.52 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=76.9
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCc---eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-----CcE
Q 014114 173 SEKFSLFGGKG-----VEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQV 239 (430)
Q Consensus 173 ~~~~l~~~~~d-----g~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i 239 (430)
++.+++.|+.+ ..+.+||+.+.+ -...-..+.. ......+.+ ++.+++.|+.+ ..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~-------r~~~~~~~~----~~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-------RGLAGATTL----GDMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC-------CBSCEEEEE----TTEEEEECCBCSSCBCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC-------ccceeEEEE----CCEEEEEcccCCCcccceE
Confidence 45566666654 468999988765 2111111100 011222222 56777777644 358
Q ss_pred EEEECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeEEeE--EeccccCcEEEEEEcC
Q 014114 240 RLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP 311 (430)
Q Consensus 240 ~~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~i~~s~ 311 (430)
.+||+.+.+= .+..+.........+. -++++++.|+.+ ..+.+||+.+.+-... +... ......+.+
T Consensus 131 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~-- 205 (301)
T 2vpj_A 131 ERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVALL-- 205 (301)
T ss_dssp EEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--
T ss_pred EEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEEE--
Confidence 8899876431 1111111111112222 266777777654 4588999887653322 2111 111222333
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCcee
Q 014114 312 TLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 312 ~~~~l~s~~~d-----~~v~iwd~~~~~~~ 336 (430)
++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 56777777764 46899999876544
No 314
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.58 E-value=0.3 Score=51.01 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=129.6
Q ss_pred CCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
+|..+.||.-. ..++.|+|+.+.+.+..+.... .|.--.|.+... +.--.+..|..|++.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---------~VvfWkWis~~~----------l~lVT~~aVyHW~~~ 133 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---------DVTFWKWISLNT----------VALVTDNAVYHWSME 133 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCC---------CceEEEecCCCe----------eEEEcCCeEEEeccC
Confidence 56666666654 6889999998877776665422 455455555332 333334579999986
Q ss_pred eecccccCCcceeeEEeecc---CCceEEEEEcCCCCEEEEec-------CCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
... .++++++... +..|.....+++.++++..| -.|.+.+|..+.+. .+.+.+|.....
T Consensus 134 ~~s-------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~--- 202 (1630)
T 1xi4_A 134 GES-------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA--- 202 (1630)
T ss_pred CCC-------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh---
Confidence 422 3444444221 34566667777777776433 34778888876532 233344321111
Q ss_pred cCcceeEeEEeeCC-CCCEEEEEeC---CCcEEEEECCCC---C-----cceEEeee---cCCCeEEEEeeCCCCEEEEE
Q 014114 212 TPTWFTSAAFLSID-DHRKFVAGTN---DHQVRLYDTSAQ---R-----RPVMSFDF---RETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 212 ~~~~v~~~~~~~~~-~~~~l~~~~~---dg~i~~wd~~~~---~-----~~~~~~~~---~~~~i~~~~~s~~~~~l~~~ 276 (430)
.+.....+ ....++.+.. .+.+++.++... . +.+..+-. ...-..++..++....++.-
T Consensus 203 ------~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 203 ------QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred ------eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 11110001 1112222211 268888888543 1 11111111 12334466777777788888
Q ss_pred cCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 014114 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 277 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~ 335 (430)
+.-|.|++||+.++.+++.-+-. ..+|...+-+....=++.....|.|.--.+.....
T Consensus 277 tk~G~~~~~d~~t~~~i~~~ris-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ecCceEEEEecccchhhhhcccc-CCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 89999999999999987655433 44555444443333344444566665555554443
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.55 E-value=0.61 Score=45.07 Aligned_cols=231 Identities=8% Similarity=-0.100 Sum_probs=132.8
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
+|+.+ ....|+..++.+......+.. +......++.+..... ..+++-..++.|..+++....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~-------~lywtD~~~~~I~r~~~~g~~-- 70 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDN-------RIYWTDISLKTISRAFMNGSA-- 70 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSCS--
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCC-------EEEEEECCCCeEEEEECCCCC--
Confidence 45554 457799999876543222211 1112455666654322 245555667777776654211
Q ss_pred ccCCcceeeEEeeccCCceEEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCC
Q 014114 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
...+... .......+++++.+..| ++-...+.|.+.++........+... ......+++ +|
T Consensus 71 ------~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------l~~P~~iav--dp 132 (628)
T 4a0p_A 71 ------LEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------LDSPRALAL--DP 132 (628)
T ss_dssp ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------CCCEEEEEE--ET
T ss_pred ------cEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------CCCcccEEE--cc
Confidence 1111111 11346688888755544 45556788999998654332222111 134678888 66
Q ss_pred CCCEEEEEe--CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCCeEEeEEeccccC
Q 014114 226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 226 ~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~ 302 (430)
....|+.+. ..+.|...++.... ...+-..-.....|++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus 133 ~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~ 208 (628)
T 4a0p_A 133 AEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP 208 (628)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred CCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence 544555544 25688888887543 222222345678999999776666654 557799999865433 233333 34
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~ 337 (430)
...+|++.. +.++++-...+.|...|..+++...
T Consensus 209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 567888865 4445555567889999977765443
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.42 E-value=0.1 Score=54.37 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=71.8
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+.-++|..+.++.-. ..++.+||+.+.+.+....-. ..|.--.|. +.+.|+..+ +..|+.|++..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~----------e~VvfWkWi---s~~~l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI---SLNTVALVT-DNAVYHWSMEG 134 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC----------CCceEEEec---CCCeeEEEc-CCeEEEeccCC
Confidence 445688888777654 678999999988877665543 346666775 334454443 45799999976
Q ss_pred CCcceEEeeec----CCCeEEEEeeCCCCEEEEEc-------CCCCEEEEEcc
Q 014114 247 QRRPVMSFDFR----ETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIR 288 (430)
Q Consensus 247 ~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~-------~dg~v~iwd~~ 288 (430)
...|+..+..| ...|..-..+++.++++..+ -.|.+.+|...
T Consensus 135 ~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 55566666655 34666677788888776433 23667777764
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.31 E-value=0.46 Score=40.96 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=75.0
Q ss_pred CCCEEEEecCCC-----eEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-------CcEE
Q 014114 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR 240 (430)
Q Consensus 173 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~i~ 240 (430)
++.+++.|+.++ .+.+||+.+.+-...-...... ....++.+ ++.+++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-------SSVGVGVV----GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-------BSCEEEEE----TTEEEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-------cCceEEEE----CCEEEEEeCCCCCCCccccEEE
Confidence 566667776543 5788898776432221111100 11222223 56677776643 3588
Q ss_pred EEECCCCCcceEEee---ecCCCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeEEe--EEeccccCcEEEEEEc
Q 014114 241 LYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH 310 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~s 310 (430)
+||+.+.. -..+. ........+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+... ......+.+
T Consensus 177 ~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~- 250 (302)
T 2xn4_A 177 CYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCAV- 250 (302)
T ss_dssp EEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE-
T ss_pred EEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEEE-
Confidence 99987642 11111 11111122222 56777777654 368899998765322 12111 111122222
Q ss_pred CCCCEEEEEeCCC-----eEEEEeCCCCce
Q 014114 311 PTLPIIASCGLDS-----YLRFWDIKTRQL 335 (430)
Q Consensus 311 ~~~~~l~s~~~d~-----~v~iwd~~~~~~ 335 (430)
++++++.|+.++ .+.+||+.+.+-
T Consensus 251 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 -NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp -TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred -CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 667777777653 478888876543
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.28 E-value=0.56 Score=41.68 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=40.6
Q ss_pred CCeEEEEee-------CCCCEEEEEcCCCCEEEEEccCC-eEE--eEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 259 ~~i~~~~~s-------~~~~~l~~~~~dg~v~iwd~~~~-~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
.....++|. .+|.++++....+.|...++... +.. ..+.......+..+++.|||.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 467788883 56777777667778888888643 222 233221145789999999997666653
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.27 E-value=0.37 Score=41.71 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=91.2
Q ss_pred CCCEEEEecCC----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC------CcEEEE
Q 014114 173 SEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLY 242 (430)
Q Consensus 173 ~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~~w 242 (430)
++.+++.|+.+ ..+.+||+.+.+-...-..+... .....+.+ ++.+++.|+.+ ..+.+|
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-------DSLAACAA----EGKIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-------BSCEEEEE----TTEEEEECCBBTTBSCCCCEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-------cceeEEEE----CCEEEEECCCCCCCcEeeeEEEE
Confidence 45566667654 57889998876532221111100 11222233 66777777765 468899
Q ss_pred ECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcC---------CCCEEEEEccCCeEEe--EEeccccCcEEEEE
Q 014114 243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLG--CFIGKCSGSIRSIA 308 (430)
Q Consensus 243 d~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~--~~~~~~~~~v~~i~ 308 (430)
|+.+.. -..+.. .......+. -++++++.|+. -..+.+||+.+.+-.. .+... ...-..+.
T Consensus 124 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 198 (306)
T 3ii7_A 124 DTRTES--WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVF 198 (306)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred eCCCCc--eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch-hhcceEEE
Confidence 988743 111111 111112222 25666677653 3458899998765322 12111 11122223
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC-----CcEEEecCCC
Q 014114 309 RHPTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND 376 (430)
Q Consensus 309 ~s~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d-----~~v~vw~~~~ 376 (430)
+ ++++++.|+.+ ..+.+||+.+.+-...-.++...... ..+.+ ++.+ +.++.+ ..+.+||...
T Consensus 199 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 199 V--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV-KCAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp E--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC-EEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred E--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce-eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 3 66677777643 35889998876533221121111111 22222 5666 777644 3466666644
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.20 E-value=0.62 Score=41.36 Aligned_cols=186 Identities=10% Similarity=-0.083 Sum_probs=95.5
Q ss_pred CceEEEEEcCC---CCEEEEecCC------CeEEEEECCCCc-----eeee-ecCCCCCCCCcccCcceeEeEEeeCCCC
Q 014114 163 GTIAFSKVDIS---EKFSLFGGKG------VEVNVWDLDKCE-----KIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 163 ~~i~~~~~~~~---~~~l~~~~~d------g~v~iwd~~~~~-----~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (430)
.....|+++|+ +..|+++... +.|..|++..+. .+.. +..... .. .....++| .|++
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~----~~--h~~~~l~~--~pdG 146 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPH----GL--HSGGRIAF--GPDG 146 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTT----CC--CCCCCEEE--CTTS
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCC----CC--cCCceEEE--CCCC
Confidence 46789999997 5555554432 678888876431 1211 221000 00 12357888 8899
Q ss_pred CEEEEEeC-------------CCcEEEEECCCC------------CcceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCC
Q 014114 228 RKFVAGTN-------------DHQVRLYDTSAQ------------RRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGD 281 (430)
Q Consensus 228 ~~l~~~~~-------------dg~i~~wd~~~~------------~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~ 281 (430)
.++++.+. .|.|.-++.... ........++ .....++|+| +++++++-.....
T Consensus 147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC--
T ss_pred CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC
Confidence 76665432 256666666430 0111111222 2356788999 5655554333332
Q ss_pred E------EEEEccCCe------------------EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--
Q 014114 282 L------ASVDIRTGK------------------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL-- 335 (430)
Q Consensus 282 v------~iwd~~~~~------------------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~-- 335 (430)
+ .|.-+..+. ++..+.. ......++| .+|.++++.-..+.|...++.....
T Consensus 226 ~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~--~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~ 302 (352)
T 2ism_A 226 EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ--GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRW 302 (352)
T ss_dssp ----CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT--CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEE
T ss_pred CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC--CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcce
Confidence 1 222222221 2222211 234567777 4666666665667788777764431
Q ss_pred ----eeEEeeccccceeEEEeeecCCcce-eee
Q 014114 336 ----LSAVFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 336 ----~~~~~~~~~~~~~i~~~~~s~~g~~-~~~ 363 (430)
...+ +. . ...+..+++.|||.+ ++.
T Consensus 303 ~~~~~~~~-~~-~-~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 303 RVLRVETA-LS-G-FGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEEEEEE-EE-S-SCCEEEEEECTTSCEEEEE
T ss_pred eecchhee-cc-c-CCCeeEEEECCCCcEEEEE
Confidence 1111 21 1 123688899999987 443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.19 E-value=0.38 Score=41.49 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=90.8
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC-----cEEEE
Q 014114 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLY 242 (430)
Q Consensus 173 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~w 242 (430)
++.+++.|+.+ ..+.+||+.+.+-...-..+... .....+.+ ++.+++.|+.++ .+.+|
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~ 129 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR-------STLGAAVL----NGLLYAVGGFDGSTGLSSVEAY 129 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEE----TTEEEEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc-------cceEEEEE----CCEEEEEcCCCCCccCceEEEE
Confidence 45666666644 35888998776432221111100 11222233 567777777553 57788
Q ss_pred ECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCC-------CCEEEEEccCCeEEe--EEeccccCcEEEEEEc
Q 014114 243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-------GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH 310 (430)
Q Consensus 243 d~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-------g~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~s 310 (430)
|+.+.+ -..+.. .......+. -++++++.|+.+ ..+.+||+.+.+-.. .+... ......+.+
T Consensus 130 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~- 203 (302)
T 2xn4_A 130 NIKSNE--WFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGVL- 203 (302)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE-
T ss_pred eCCCCe--EeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEEE-
Confidence 887633 111111 111112222 256677776542 358899998765322 22221 112222333
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCCC-----cEEEecCCC
Q 014114 311 PTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAP-----MLEIQNGND 376 (430)
Q Consensus 311 ~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~-----~v~vw~~~~ 376 (430)
++.+++.|+.+ ..+.+||+.+.+-...-.+...... ..++ .-++.+ +.++.++ .+.+||...
T Consensus 204 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 204 -NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN--AGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp -TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEE-EETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred -CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc--CeEE-EECCEEEEECCcCCCcccccEEEEcCCC
Confidence 66777777764 3688999887654332111111011 1111 125666 6666543 366666654
No 322
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.08 E-value=0.94 Score=42.33 Aligned_cols=73 Identities=12% Similarity=-0.014 Sum_probs=52.8
Q ss_pred CCeEEEEeeCCCCEEEEEc-CCCCEEEEEccCC------eE-------EeEEeccccCcEEEEEEcCCCCEEEEEeCCCe
Q 014114 259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG------KL-------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~------~~-------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~ 324 (430)
.....+.++|||+++++++ .+.++.++|++.. +. ...... .......+|.++|....+--.|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--GLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--CSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--CCcccEEEECCCCceEeeeeecce
Confidence 3456688999999988776 6788999998741 11 222222 446778899999955555568999
Q ss_pred EEEEeCCCC
Q 014114 325 LRFWDIKTR 333 (430)
Q Consensus 325 v~iwd~~~~ 333 (430)
|.-|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999998653
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.07 E-value=0.055 Score=43.93 Aligned_cols=111 Identities=7% Similarity=-0.204 Sum_probs=64.7
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeE------EeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
..+..++|+|+|.+.++ .+|.+.-.+..+... -..+-..--....++.|.|+|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 47889999999986666 677666666544111 11111000112478899999987777 569998887533
Q ss_pred Cceee-----EEeeccccceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 333 RQLLS-----AVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 333 ~~~~~-----~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
...-. .. +...-=..+..+.|.|+|.+.++. |+.+.-...+
T Consensus 117 ~~~~~Wl~~a~~-vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P 162 (236)
T 1tl2_A 117 SDTDNWIARATE-VGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP 162 (236)
T ss_dssp STTCCHHHHSEE-EECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred CCCCceeccccE-eccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence 21111 10 111001125889999999994444 7776443333
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.06 E-value=0.6 Score=43.07 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=60.9
Q ss_pred ceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-ceEEeee------cCCCeEEEEeeCC---CCEEEEEcC------
Q 014114 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF------RETPIKAVAEEPD---SFNIYIGNG------ 278 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~~------ 278 (430)
....++| .|+++++++-...+.|++++...+.. .+..+.. ....+..|+|+|+ +..|++...
T Consensus 28 ~P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4678899 78998777654445788888654432 1222211 2356779999995 555555432
Q ss_pred -------CCCEEEEEccCC-------eEEe-EEeccccCcEEEEEEcCCCCEEEEEeC
Q 014114 279 -------SGDLASVDIRTG-------KLLG-CFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 279 -------dg~v~iwd~~~~-------~~~~-~~~~~~~~~v~~i~~s~~~~~l~s~~~ 321 (430)
...|.-|++... +.+. .+..........|+|.|||.++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554321 1222 122211235789999999987777553
No 325
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.04 E-value=0.74 Score=40.84 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=38.1
Q ss_pred CCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe----E--EeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----L--LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 259 ~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~----~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
.....++| .+|.++++....+.|...++.... . ...+... ...+..+++.|||.++++..
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence 35567777 467666666666778777765332 1 1222222 46789999999998766654
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.91 E-value=0.73 Score=39.64 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=77.3
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-----CcEEEE
Q 014114 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY 242 (430)
Q Consensus 173 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~w 242 (430)
++.+++.|+.+ ..+.+||+.+.+-...-...... ....++.+ ++.+++.|+.+ ..+.+|
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-------EGAGLVVA----SGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-------BSCEEEEE----TTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-------ccceEEEE----CCEEEEECCCCCCcccceEEEE
Confidence 56677777643 36889998776432221111100 11222223 66777777654 458899
Q ss_pred ECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeEEe--EEeccccCcEEEEEEcCC
Q 014114 243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 243 d~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~s~~ 312 (430)
|+.+.. -..+.. .......+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+... ......+.+ +
T Consensus 181 d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~ 253 (301)
T 2vpj_A 181 DPHTGH--WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVL--R 253 (301)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--T
T ss_pred eCCCCc--EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEE--C
Confidence 987642 122211 1111122222 56677777654 468999998765332 22211 112223333 6
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCce
Q 014114 313 LPIIASCGLD-----SYLRFWDIKTRQL 335 (430)
Q Consensus 313 ~~~l~s~~~d-----~~v~iwd~~~~~~ 335 (430)
+++++.|+.+ ..|.+||+.+.+-
T Consensus 254 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 254 GRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp TEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 6777777765 3678889877654
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.90 E-value=0.71 Score=40.71 Aligned_cols=149 Identities=11% Similarity=0.007 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCC---CCEEEEE---eCC
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAG---TND 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~---~~d 236 (430)
...+.|+|.|++.++++--..|.|++++...+........... ..........++| +|+ +..|++. ..+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v---~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV---SPSGEGGLLGIAL--SPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC---CCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce---eecCCCCceeeEe--ccccccCCEEEEEEecCCC
Confidence 4567999999998777665589999998765543211111100 0011245788999 674 3344332 245
Q ss_pred CcEEEEECCCCC-------cceE---Eeee-cCCCeEEEEeeCCCCEEEEEcC-------------CCCEEEEEccCCeE
Q 014114 237 HQVRLYDTSAQR-------RPVM---SFDF-RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTGKL 292 (430)
Q Consensus 237 g~i~~wd~~~~~-------~~~~---~~~~-~~~~i~~~~~s~~~~~l~~~~~-------------dg~v~iwd~~~~~~ 292 (430)
..|.-|.+.... .... .+.. .......|+|.|||.+.++.+. .|.|.-++.. ++.
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCc
Confidence 566667665411 1111 1211 1124567999999977666432 2444444543 220
Q ss_pred --------EeEEe-ccccCcEEEEEEcCCCCEEEEE
Q 014114 293 --------LGCFI-GKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 293 --------~~~~~-~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
...+. ++ .....++|+|+|.++++=
T Consensus 186 p~~nPf~~~~i~a~G~--RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVYSYGH--RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEEEBCC--SBCCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEEeeCC--CCcceEEECCCCCEEEEe
Confidence 11122 32 346789999988765544
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.66 E-value=0.93 Score=39.07 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=78.0
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC---------CC
Q 014114 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH 237 (430)
Q Consensus 173 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg 237 (430)
++.+++.|+.+ ..+.+||+.+.+=...-..+... ....++.+ ++.+++.|+. -.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-------CSHGMVEA----NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEE----TTEEEEECCEESCTTTCEECC
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-------ceeEEEEE----CCEEEEECCCCCCCCcccccc
Confidence 56677777765 45889998876532221111100 11122223 5667777653 34
Q ss_pred cEEEEECCCCCcceEEeeecC-C-CeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeEE--eEEeccccCcEEEEE
Q 014114 238 QVRLYDTSAQRRPVMSFDFRE-T-PIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLL--GCFIGKCSGSIRSIA 308 (430)
Q Consensus 238 ~i~~wd~~~~~~~~~~~~~~~-~-~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~--~~~~~~~~~~v~~i~ 308 (430)
.+.+||+.+.. -..+.... . .-.+++.. ++++++.|+.+ ..+.+||+.+.+-. ..+... ......+.
T Consensus 170 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 245 (306)
T 3ii7_A 170 SCEVYDPATET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCAA 245 (306)
T ss_dssp CEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEEE
T ss_pred eEEEeCCCCCe--EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEEE
Confidence 58899988742 12221111 1 11122222 56677777654 45889999876432 222221 22223333
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 014114 309 RHPTLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 309 ~s~~~~~l~s~~~d-----~~v~iwd~~~~~~~ 336 (430)
+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 67778888754 46888898775543
No 329
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.52 E-value=1.2 Score=39.45 Aligned_cols=186 Identities=9% Similarity=-0.031 Sum_probs=99.5
Q ss_pred CceEEEEEcCC---CCEEEEecC----C----CeEEEEECCCC-------ceeee-ecCCCCCCCCcccCcceeEeEEee
Q 014114 163 GTIAFSKVDIS---EKFSLFGGK----G----VEVNVWDLDKC-------EKIWT-AKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 163 ~~i~~~~~~~~---~~~l~~~~~----d----g~v~iwd~~~~-------~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.....|+++|+ +..|+++.. + +.|..|++... +.+.. +.... . .....++|
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~------~--h~~~~l~~-- 142 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAY------I--HNGGRIRF-- 142 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCS------S--CCCCCEEE--
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCC------C--cCCceEEE--
Confidence 45789999997 555554433 3 57888887643 11111 22110 0 12456888
Q ss_pred CCCCCEEEEEeC-------------CCcEEEEECCCCC-------cceEEeeecCCCeEEEEeeC-CCCEEEEEcCCCC-
Q 014114 224 IDDHRKFVAGTN-------------DHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGD- 281 (430)
Q Consensus 224 ~~~~~~l~~~~~-------------dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~- 281 (430)
.|++.++++.+. .|.|..++....- .......++ .....++|+| +++++++-.....
T Consensus 143 ~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~ 221 (354)
T 3a9g_A 143 GPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGH 221 (354)
T ss_dssp CTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSC
T ss_pred CCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCC
Confidence 889986666432 2456666654310 111112233 2346799999 5665554332221
Q ss_pred --EEEEEccCCe------------------EEeEEeccccCcEEEEEEc-------CCCCEEEEEeCCCeEEEEeCCCC-
Q 014114 282 --LASVDIRTGK------------------LLGCFIGKCSGSIRSIARH-------PTLPIIASCGLDSYLRFWDIKTR- 333 (430)
Q Consensus 282 --v~iwd~~~~~------------------~~~~~~~~~~~~v~~i~~s-------~~~~~l~s~~~d~~v~iwd~~~~- 333 (430)
|.+.. .+. ++..+... ......++|. .+|.++++.-..+.|...++...
T Consensus 222 dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g 298 (354)
T 3a9g_A 222 DEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNM 298 (354)
T ss_dssp CEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGG
T ss_pred cEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCC
Confidence 33322 211 22222111 3467888884 46766766667778888888753
Q ss_pred ceeeE-EeeccccceeEEEeeecCCcce-eee
Q 014114 334 QLLSA-VFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 334 ~~~~~-~~~~~~~~~~i~~~~~s~~g~~-~~~ 363 (430)
+.... ..+.+. ...+..+++.|||.+ ++.
T Consensus 299 ~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 299 EVRKISTFFKNV-FGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CEEEEEEECTTT-SCCEEEEEECTTSCEEEEE
T ss_pred cccceeeeccCC-CCCeeEEEECCCCcEEEEE
Confidence 33211 112222 234688999999987 444
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.37 E-value=0.69 Score=40.04 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=75.4
Q ss_pred CCCEEEEecC----C-----CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCC-----Cc
Q 014114 173 SEKFSLFGGK----G-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQ 238 (430)
Q Consensus 173 ~~~~l~~~~~----d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~ 238 (430)
++.+++.|+. + ..+.+||+.+.+-...-..... ......+.+ ++.+++.|+.+ ..
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------r~~~~~~~~----~~~iyv~GG~~~~~~~~~ 138 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-------RNRIGVGVI----DGHIYAVGGSHGCIHHNS 138 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-------CBTCEEEEE----TTEEEEECCEETTEECCC
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC-------ccccEEEEE----CCEEEEEcCCCCCccccc
Confidence 4555555654 2 3588899877642221111110 011222333 56777777643 35
Q ss_pred EEEEECCCCCcceEEee---ecCCCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeEEe--EEeccccCcEEEEE
Q 014114 239 VRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIA 308 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~i~ 308 (430)
+.+||+.+.+ -..+. ........+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+... ......+.
T Consensus 139 ~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 213 (308)
T 1zgk_A 139 VERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCV 213 (308)
T ss_dssp EEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE
T ss_pred EEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEE
Confidence 8889987632 11111 11111122222 56677777654 458899988765321 12211 11222333
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 014114 309 RHPTLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 309 ~s~~~~~l~s~~~d-----~~v~iwd~~~~~~~ 336 (430)
+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 214 ~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 214 L--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred E--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 3 66777777764 46899998876543
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.16 E-value=1.1 Score=38.60 Aligned_cols=183 Identities=7% Similarity=0.006 Sum_probs=90.5
Q ss_pred CCCEEEEecC----CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC----C-----CcE
Q 014114 173 SEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----D-----HQV 239 (430)
Q Consensus 173 ~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d-----g~i 239 (430)
++.+++.|+. -..+.+||+.+.+-... ...... . ... +++. -++.+++.|+. + ..+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~--r----~~~-~~~~---~~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVP--R----SGL-AGCV---VGGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSC--C----BSC-EEEE---ETTEEEEECCEEEETTEEEECCCE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcc--c----ccc-eEEE---ECCEEEEECCCcCCCCCCeecceE
Confidence 5566666763 23588999877653222 111100 0 111 2222 15667777765 2 368
Q ss_pred EEEECCCCCcceEEee---ecCCCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeEEe--EEeccccCcEEEEEE
Q 014114 240 RLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIAR 309 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~i~~ 309 (430)
.+||+.+.+ -..+. ........+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+... ...-..+.+
T Consensus 93 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~ 167 (308)
T 1zgk_A 93 DCYNPMTNQ--WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVL 167 (308)
T ss_dssp EEEETTTTE--EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE
T ss_pred EEECCCCCe--EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEE
Confidence 889987632 11111 11111222222 56677777643 458899998765322 22211 112222333
Q ss_pred cCCCCEEEEEeCC-----CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eeecCC-----CcEEEecCCC
Q 014114 310 HPTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND 376 (430)
Q Consensus 310 s~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d-----~~v~vw~~~~ 376 (430)
++.+++.|+.+ ..+.+||+.+.+-...-.++...... ..+.+ ++.+ +.++.+ ..+.+||...
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence 66777777654 45889998776543221111111111 11222 5666 666654 4567777654
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.91 E-value=1.9 Score=38.19 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=41.1
Q ss_pred CCeEEEEeeC-------CCCEEEEEcCCCCEEEEEccCCeEEeE--EeccccCcEEEEEEcCCCCEEEEE
Q 014114 259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 259 ~~i~~~~~s~-------~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
.....++|.. ++.++++....+.|...++..++.... +.......+..|++.|||.++++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 4567788863 567777777778888888876654332 221113579999999999866654
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.90 E-value=1.5 Score=38.70 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=31.0
Q ss_pred CEEEEEccCCe--EEeEEeccccCcEEEEEEcCCCCEEEEEeCCC------eEEEEeCCCCceeeEEeeccc
Q 014114 281 DLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS------YLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 281 ~v~iwd~~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~ 344 (430)
.+.+||+.+.+ .+..+... ...-.++. .++++++.|+.++ .|.++++++++.+....++.|
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-----
T ss_pred eEEEEecCCCceeeCCCCCCC-cccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccccc
Confidence 57889987653 33333322 12222333 3677888888653 466678888887776444443
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.80 E-value=1.8 Score=37.44 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=56.5
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCCcceEEee---ecCCCeEEEEeeCCCCEEEEEcC-C-----CCEEEEEcc
Q 014114 226 DHRKFVAGTND--------HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNG-S-----GDLASVDIR 288 (430)
Q Consensus 226 ~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~-d-----g~v~iwd~~ 288 (430)
++.+++.|+.+ ..+.+||+.+.+ -..+. ........+. -++++++.|+. + ..+.+||+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCC
Confidence 56677777632 358889987642 11111 1111112222 35667777765 2 458999998
Q ss_pred CCeEE--eEEeccccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcee
Q 014114 289 TGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDS-----YLRFWDIKTRQLL 336 (430)
Q Consensus 289 ~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~-----~v~iwd~~~~~~~ 336 (430)
+.+-. ..+... ...-..+.+ ++++++.|+.++ .+.+||+.+.+-.
T Consensus 174 ~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 174 KFEWKELAPMQTA-RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEECCCCSSC-CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCeEEECCCCCCc-hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 76432 222211 111222333 667778887654 5888998876543
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.72 E-value=1.9 Score=37.25 Aligned_cols=173 Identities=6% Similarity=-0.047 Sum_probs=93.6
Q ss_pred EEcCCCCEEEEecC--------------CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEe
Q 014114 169 KVDISEKFSLFGGK--------------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 169 ~~~~~~~~l~~~~~--------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 234 (430)
-+++++.+|+.... ...|+..++...+....... .+..| ++++++|+-..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~--s~~g~~Iy~~~ 122 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--------------PCIYA--SLIGNYIYYLH 122 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--------------CEEEE--EEETTEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--------------CccEE--EEeCCEEEEEe
Confidence 34566777765543 24577777766543322211 11244 45778877765
Q ss_pred ----CCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcC-CCCEEEEEccCCeEEeEEeccccCcEEEEEE
Q 014114 235 ----NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 235 ----~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
....|+..++.... ...+..+.. .+++++++.|+-.+. ...|...++..+.....+.+ ... ..+
T Consensus 123 ~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~ 191 (302)
T 3s25_A 123 YDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPV 191 (302)
T ss_dssp ESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEE
T ss_pred ecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-cee
Confidence 34456666665422 344444322 457788888876654 57788888876654433332 222 345
Q ss_pred cCCCCEEEEEeCC--CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee--cCCCcEEEecCCC
Q 014114 310 HPTLPIIASCGLD--SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA--ADAPMLEIQNGND 376 (430)
Q Consensus 310 s~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~--~~d~~v~vw~~~~ 376 (430)
+|++.+|+-...+ ..|..-++..... .. +... . + ..|+|++.. ..+ ...+.|..-+.+.
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~--Lt~~--~-~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINNPNP-VV--LTEA--N-I--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSSCCC-EE--CSCS--C-E--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred eecCCEEEEEEcCCCcEEEEEECCCCCe-EE--EeCC--C-c--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 6888888776544 3566666654443 22 2111 1 1 237777776 322 2234454444443
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.70 E-value=1.9 Score=37.28 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCCEEEEecCC--------CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-C-----Cc
Q 014114 173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-----HQ 238 (430)
Q Consensus 173 ~~~~l~~~~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~ 238 (430)
++.+++.|+.+ ..+.+||+.+.+=.. +...... . .....+.+ ++.+++.|+. + ..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~---r---~~~~~~~~----~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYV---V---YGHTVLSH----MDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSC---C---BSCEEEEE----TTEEEEECCBCTTSCBCCC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCc---c---cceeEEEE----CCEEEEEeCCCCCCcccce
Confidence 56666777642 458899988764221 1111000 0 11222223 5677777775 2 46
Q ss_pred EEEEECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCCC-----CEEEEEccCCeEEe--EEeccccCcEEEEE
Q 014114 239 VRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLG--CFIGKCSGSIRSIA 308 (430)
Q Consensus 239 i~~wd~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~~v~~i~ 308 (430)
+.+||+.+.. -..+.. ......++.+ ++++++.|+.++ .+.+||+.+.+-.. .+... ......+.
T Consensus 167 ~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 241 (315)
T 4asc_A 167 MCVYDPKKFE--WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS 241 (315)
T ss_dssp EEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred EEEEeCCCCe--EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE
Confidence 8899988632 111111 1111122222 667777777654 48889998764322 22111 11222233
Q ss_pred EcCCCCEEEEEeCCC--------------eEEEEeCCCCce
Q 014114 309 RHPTLPIIASCGLDS--------------YLRFWDIKTRQL 335 (430)
Q Consensus 309 ~s~~~~~l~s~~~d~--------------~v~iwd~~~~~~ 335 (430)
+ ++++++.|+.++ .+.+||+.+.+-
T Consensus 242 ~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 242 L--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp E--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred E--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 3 567777777542 366777766543
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.98 E-value=5.3 Score=39.52 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=113.1
Q ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEE
Q 014114 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 240 (430)
..|.++....++.+.+ |+.+| +..++..++. ....+..... ...+ ....|.++.- ..+++ |..|+ ++-|.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~-~~~l-~~~~v~~i~~--d~~g~-lWigt-~~GL~ 395 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDK-TYPL-SHNRIRHIYE--DKEQQ-LWIAT-DGSIN 395 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCS-SSCC-SCSCEEEEEE--CTTSC-EEEEE-TTEEE
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCc-CCCC-CCCceEEEEE--CCCCC-EEEEe-CCcHh
Confidence 4688888887776655 45554 6677765532 1111211100 0011 1245777776 55665 44455 45789
Q ss_pred EEECCCCCcceEEeee-------cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC------CeEE--eEEec---cccC
Q 014114 241 LYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLL--GCFIG---KCSG 302 (430)
Q Consensus 241 ~wd~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~------~~~~--~~~~~---~~~~ 302 (430)
.||..+++ +..+.. ....|.++...+++ .|..|+..+-|.++|..+ .... ..+.. ....
T Consensus 396 ~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 396 RYDYATRQ--FIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp EEETTTTE--EEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred hcCcCCCc--EEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 99987743 232221 12457888777666 566677766788998653 1121 12211 1123
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccc-cceeEEEeeecCCcceeeecCCCcEEEecCC
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH-LNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~ 375 (430)
.|.++...++|.+.+.++..+-|..+|..+++.... ..... ....+.++....+|.+..++..| |..|+..
T Consensus 473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~-~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~ 544 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL-FADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPK 544 (758)
T ss_dssp CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE-CTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC-
T ss_pred eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe-cCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecC
Confidence 599999999998766434344588899877654432 11111 12346788888899984444444 6777654
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.08 E-value=4 Score=35.27 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCCcceEEeeecCCCe--EEEEeeCCCCEEEEEcC------CCCEEEEEccCC
Q 014114 226 DHRKFVAGTND-------HQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNG------SGDLASVDIRTG 290 (430)
Q Consensus 226 ~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~------dg~v~iwd~~~~ 290 (430)
++.+++.|+.+ ..+.+||+.+.+ -..+..-..+. .+++. .++.+++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 56777777754 257888887632 11111111110 11222 36667777764 235899999876
Q ss_pred eEEe--EEeccccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCce
Q 014114 291 KLLG--CFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQL 335 (430)
Q Consensus 291 ~~~~--~~~~~~~~~v~~i~~s~~~~~l~s~~~d-----~~v~iwd~~~~~~ 335 (430)
+-.. .+... ......+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 186 ~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 186 DWKDLAPMKTP-RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEEECCCSSC-CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEEECCCCCCC-cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 5322 12211 111222333 66777777643 3577889877653
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.66 E-value=8.5 Score=38.03 Aligned_cols=269 Identities=13% Similarity=0.116 Sum_probs=141.1
Q ss_pred EEEeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCC
Q 014114 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.++.. ..+| +|..|+.+| +..||-.. ...+.... ......|.++..-. .+.|..++.+|
T Consensus 24 V~~I~q--D~~G-~lWigT~~G-L~ryDG~~---~~~~~~~~----~~~~~~i~~i~~d~---------~g~lWigT~~G 83 (758)
T 3ott_A 24 VSCFLQ--DSEG-LIWIGSNKG-LFSYDGYS---TQQHFTYG----ENNNTRIYCGVIID---------NTYLYMGTDNG 83 (758)
T ss_dssp EEEEEE--CTTS-CEEEEESSC-EEEECSSC---EEECSCTT----STTSSCEEEEEEET---------TTEEEEEETTE
T ss_pred EEEEEE--CCCC-CEEEEECCC-ccccCCCc---eEEEEccC----CCCCceEEEEEEcC---------CCcEEEEeCCC
Confidence 444544 2233 477787777 55676322 11121110 11223565544322 23666666655
Q ss_pred eeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccC
Q 014114 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
+..|+.....-. .........|.++... ++ .|..++.+ -|..||..+++... +..... .+ ..
T Consensus 84 -l~~yd~~~~~f~---------~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~---~l-~~ 145 (758)
T 3ott_A 84 -ILVYNYRADRYE---------QPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTS-FDTRRN---GL-PN 145 (758)
T ss_dssp -EEEEETTTTEEC---------CCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEE-ECHHHH---CC-SC
T ss_pred -eEEEeCCCCEEE---------CcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEE-eccCCC---Cc-CC
Confidence 667765421100 0000012346666542 44 45556666 58889987655432 210000 00 01
Q ss_pred cceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeec------CCCeEEEEeeCCCCEEEEEcCCCCEEEEEc
Q 014114 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~ 287 (430)
..|.++.. ..++.+.+ ++.+ -|..++..+.. ...+... ...|.++...+++..|..|+. +-+..+|.
T Consensus 146 ~~i~~i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 146 NTIYSIIR--TKDNQIYV-GTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp SCEEEEEE--CTTCCEEE-EETT-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET
T ss_pred CeEEEEEE--cCCCCEEE-EeCC-CHhhCccCCCc--eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC
Confidence 44777766 55665444 5554 47788876633 2222211 124888888777776666664 45888998
Q ss_pred cCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeec-----cccceeEEEeeecCCcceee
Q 014114 288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-----QHLNEVVFDSAFADKEVANA 362 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~g~~~~ 362 (430)
.+++........ ...|.++....+|.+.+. +.+ -+.+++..+++... +... .-....|.++....+|.+-.
T Consensus 219 ~~~~~~~~~~l~-~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWi 294 (758)
T 3ott_A 219 STGQIKQTEAFH-NNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQH-IIHDSRNIQSLTNNIIWNIFADQEHNIWL 294 (758)
T ss_dssp TTTEEEEEEEEE-EEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEE-ECCCTTCTTSCSCSCEEEEEECTTCCEEE
T ss_pred CCCeEEeccCCC-CCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEE-EEcCCCCcCcCCcCeEEEEEEcCCCCEEE
Confidence 776543221111 456899988888875544 444 48888877655432 1111 01123478888888888844
Q ss_pred ecCCCcEEEe
Q 014114 363 AADAPMLEIQ 372 (430)
Q Consensus 363 ~~~d~~v~vw 372 (430)
++..| +.++
T Consensus 295 GT~~G-l~~~ 303 (758)
T 3ott_A 295 GTDYG-ISLS 303 (758)
T ss_dssp EESSS-EEEE
T ss_pred EeCCc-cccc
Confidence 44555 4444
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.00 E-value=6 Score=34.78 Aligned_cols=249 Identities=12% Similarity=0.103 Sum_probs=114.4
Q ss_pred EeccCCCCCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEE-ccCCe
Q 014114 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGK 134 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 134 (430)
.+.+ .|+|.++++-...|.|.+++..+++.. .+... +..+.........+++.+.-. .++.|... +....
T Consensus 36 ~ia~--~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~-----~~g~lYv~yt~~~~ 106 (347)
T 3das_A 36 GLAP--LPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYA-----SDHMVYAYFTSASD 106 (347)
T ss_dssp EEEE--CTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHH-----HHCEEEEEEECSSS
T ss_pred EEEE--cCCCcEEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccc-----cCCEEEEEEecCCC
Confidence 4444 667776666655899999987555532 22221 111222334667777765311 11234332 21122
Q ss_pred eEEEEeeeeccc-c-cCCcceeeEEe-ec--cCCceEEEEEcCCCCEEEEecC-------------CCeEEEEECCCCce
Q 014114 135 ASMRSIEVTKVS-A-ESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK-------------GVEVNVWDLDKCEK 196 (430)
Q Consensus 135 i~v~~~~~~~~~-~-~~~~~~i~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~-------------dg~v~iwd~~~~~~ 196 (430)
-.|..+...... . ......-.++. .. .......|.|.|++.++++.+. .|.|.-.+... ..
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-Cc
Confidence 234433322200 0 00001111222 11 1223457899999987776442 24444444431 10
Q ss_pred eeeecCC-CCCCCCcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCC-----------------CcceEEeeec
Q 014114 197 IWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ-----------------RRPVMSFDFR 257 (430)
Q Consensus 197 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~-----------------~~~~~~~~~~ 257 (430)
. .-... ....+...+ .....++| +|++.++++-. .++.=.|--+..+ ..++..+..+
T Consensus 186 p-~~nPf~~~~i~a~G~-RNp~Gla~--dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 186 A-PGNPFPGSPVYSYGH-RNVQGLAW--DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp C-TTCSSTTCCEEEBCC-SBCCEEEE--CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred c-CCCCCCCCeEEeeCC-CCcceEEE--CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 0 00000 000000001 12456788 67776555432 2221222222211 1123333333
Q ss_pred CCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEE----eEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 258 ~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
......++|. ++..++..-..+.|....+.....+ ..+.+. ...+..|+..|||.++++..
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence 2456777776 4556666656667777776654321 122332 46789999999997665543
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.83 E-value=4.2 Score=35.01 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=73.9
Q ss_pred CCCCCEEEEEeCC--------------CcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEc--CC--CCEEEE
Q 014114 224 IDDHRKFVAGTND--------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GS--GDLASV 285 (430)
Q Consensus 224 ~~~~~~l~~~~~d--------------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d--g~v~iw 285 (430)
++++.+|+.+... ..|+..++...+. ..+.. .. ...|++++++|+-.. .+ ..|...
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 5678877776543 4677777776442 22222 22 236778888888765 33 345555
Q ss_pred EccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce-eee
Q 014114 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA 363 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~ 363 (430)
++. +.....+..+ .. .+|+++++.|+-.+. ...|...++..+... .+ +.+.. . ..+.|++.+ +..
T Consensus 135 ~~d-Gs~~~~lt~~-~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l-~~~~~----~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 135 RID-GEEKKKIKNH-YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LF-YDCNC----Y-KPVVLDDTNVYYM 201 (302)
T ss_dssp ETT-SCCCEEEESS-CC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EE-ECSCE----E-EEEEEETTEEEEE
T ss_pred ECC-CCCeEEEeCC-Cc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EE-eCCCc----c-ceeeecCCEEEEE
Confidence 664 3334445443 22 456788888876654 578888888765543 32 22221 1 235587777 333
Q ss_pred c-CC-CcEEEecCCC
Q 014114 364 A-DA-PMLEIQNGND 376 (430)
Q Consensus 364 ~-~d-~~v~vw~~~~ 376 (430)
. .+ ..|..-+.+.
T Consensus 202 ~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 202 DVNRDNAIVHVNINN 216 (302)
T ss_dssp EGGGTTEEEEECSSS
T ss_pred EcCCCcEEEEEECCC
Confidence 2 22 3444444443
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.51 E-value=5.8 Score=34.86 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCCEEEEecC-CCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC-C---------CcEEE
Q 014114 173 SEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D---------HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d---------g~i~~ 241 (430)
++.+++.|+. ...+.+||+.+....+........... ....++.+ ++.+++.|+. + ..+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccceEEEE----CCEEEEEcCCCCCCCccceeeccEEE
Confidence 4555555554 346888998752222322211110000 11222333 5677777765 2 46889
Q ss_pred EECCCCCcceEEeee---c-CCCeEEEEeeCCCCEEEEEcCC
Q 014114 242 YDTSAQRRPVMSFDF---R-ETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 242 wd~~~~~~~~~~~~~---~-~~~i~~~~~s~~~~~l~~~~~d 279 (430)
||+.+.+ -..+.. . .....++. .++++++.|+.+
T Consensus 91 yd~~~~~--W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 91 YNPKTNS--WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EETTTTE--EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EeCCCCc--EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 9987632 111111 1 11122222 467778888754
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.27 E-value=6.6 Score=33.82 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCCEEEEecCC-------CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeC------CCcE
Q 014114 173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV 239 (430)
Q Consensus 173 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i 239 (430)
++.+++.|+.+ ..+.+||+.+.+=...-..+.. . .....+.+ ++.+++.|+. -..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r---~~~~~~~~----~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK----V---YGHNVISH----NGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC----E---ESCEEEEE----TTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc----c---cccEEEEE----CCEEEEEcCCCCCCCccceE
Confidence 56666677653 3588889877543221111110 0 11112222 6677777764 2358
Q ss_pred EEEECCCCCcceEEeee---cCCCeEEEEeeCCCCEEEEEcCC-----CCEEEEEccCCeE--EeEEeccccCcEEEEEE
Q 014114 240 RLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL--LGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 240 ~~wd~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~--~~~~~~~~~~~v~~i~~ 309 (430)
.+||+.+.. -..+.. .......+. -++++++.|+.+ ..+.+||+.+.+- +..+... ......+.+
T Consensus 178 ~~yd~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~ 252 (318)
T 2woz_A 178 FIYNPKKGD--WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVSL 252 (318)
T ss_dssp EEEETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEEE
T ss_pred EEEcCCCCE--EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEEE
Confidence 899988742 111111 111112222 256677777644 3477899877542 2222211 111222233
Q ss_pred cCCCCEEEEEeCC--------------CeEEEEeCCCCce
Q 014114 310 HPTLPIIASCGLD--------------SYLRFWDIKTRQL 335 (430)
Q Consensus 310 s~~~~~l~s~~~d--------------~~v~iwd~~~~~~ 335 (430)
++++++.|+.+ ..+.+||+.+.+-
T Consensus 253 --~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 253 --AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp --TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred --CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 56677777654 3477777776544
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.05 E-value=9.3 Score=35.10 Aligned_cols=55 Identities=5% Similarity=0.002 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCEEEEEccC-Ce-EE---eEEeccccCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 014114 271 FNIYIGNGSGDLASVDIRT-GK-LL---GCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLR 326 (430)
Q Consensus 271 ~~l~~~~~dg~v~iwd~~~-~~-~~---~~~~~~~~~~v~~i~~s~~~~-~l~s~~~d~~v~ 326 (430)
.+|+..-..+.|....+.. +. .. ..+... ...+..|++.|||. ++++-...|.++
T Consensus 370 ~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~-~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKS-NNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCC-SSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred cEEEeecCCCEEEEEEECCCCCeeeeeeeeeccc-CCCceeEEECCCCCEEEEEECCCCCCc
Confidence 3444443456676666653 32 21 222222 46899999999997 666655555443
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.33 E-value=14 Score=36.06 Aligned_cols=157 Identities=9% Similarity=0.093 Sum_probs=80.5
Q ss_pred CCCCEEEEecCC----CeEEEEECCCCceeeee-cCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC------cEE
Q 014114 172 ISEKFSLFGGKG----VEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVR 240 (430)
Q Consensus 172 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~i~ 240 (430)
.++.+++.|+.+ ..+.+||+.+.+-...- ...... +..+-.-.+++.. ..++.+++.|+.++ .+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~---~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE---VPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSC---CCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCC---CCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEE
Confidence 356677777753 45888888776432221 100000 0000111222331 22677777777543 578
Q ss_pred EEECCCCCc-ceEEeeecCCCeEEEEeeCCCCEEEEEcCCC--CEEEEEccCCeEEeEE-----eccccCcEEEEEEcCC
Q 014114 241 LYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGCF-----IGKCSGSIRSIARHPT 312 (430)
Q Consensus 241 ~wd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~-----~~~~~~~v~~i~~s~~ 312 (430)
+||+.+..= .+..+...... .+++.-.++.+++.|+.++ .+.+||+.+.+-...- ... .....++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEeCC
Confidence 888876320 01111111111 1222224777888887654 6999999876532211 111 112233555555
Q ss_pred -CCEEEEEeC--C-----CeEEEEeCCCCc
Q 014114 313 -LPIIASCGL--D-----SYLRFWDIKTRQ 334 (430)
Q Consensus 313 -~~~l~s~~~--d-----~~v~iwd~~~~~ 334 (430)
+++++.|+. + ..+.+||+.+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 667777765 2 358899998776
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.00 E-value=5 Score=36.99 Aligned_cols=108 Identities=10% Similarity=0.012 Sum_probs=60.2
Q ss_pred CCeEEEEeeCCCC-EEEEEcCCCCEEEEEccCC---eEEeEEec--------cccCcEEEEEEcCC----CCEEEEEeC-
Q 014114 259 TPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG---KLLGCFIG--------KCSGSIRSIARHPT----LPIIASCGL- 321 (430)
Q Consensus 259 ~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~---~~~~~~~~--------~~~~~v~~i~~s~~----~~~l~s~~~- 321 (430)
..-+.|+|.|++. .|+++...|.|++++.... ..+..+.. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567899999995 4555668899999975322 12222211 01356889999996 444443332
Q ss_pred -C----------CeEEEEeCCC----------CceeeEEeeccccceeEEEeeecCCcce-eeecCCC
Q 014114 322 -D----------SYLRFWDIKT----------RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAP 367 (430)
Q Consensus 322 -d----------~~v~iwd~~~----------~~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~ 367 (430)
+ ..|.-|.+.. .+.+..+..... ......++|.|||.+ ++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~-~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHR-KHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSS-SSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCC-cccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 122333211111 112467899999998 6655543
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.70 E-value=13 Score=34.84 Aligned_cols=280 Identities=12% Similarity=0.062 Sum_probs=148.7
Q ss_pred cceEeecCCCcEEEEEecCcc---------------CC----cchhh-----eecCCCCcceEEEEecc-CCCCCCceEE
Q 014114 15 LRALTFDSLGLIKVIEARGED---------------GG----VPKVV-----ERWGDPHSSKCVLAASI-DDSQNDPLLA 69 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~---------------~~----~~~~~-----~~~~~~~~~~~~~~~~~-~~~p~g~~l~ 69 (430)
.-+.+|+..|.|+|+-+.... .| ..+++ ..++...++ .+++ ++.-||+||.
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp----~~S~tdg~yDGrylf 146 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHP----HISMTDGKYDGKYLF 146 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCC----EEEEETTEEEEEEEE
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCC----cccccCCeeeeEEEE
Confidence 458899999999999886541 00 01111 112221111 2222 3445778888
Q ss_pred EEc-cCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEcc-------CCeeE-----
Q 014114 70 VAR-KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-------KGKAS----- 136 (430)
Q Consensus 70 ~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~i~----- 136 (430)
.-. .+.+|...++...++-..+.. |....+.++.+.... ..++++++++ ||...
T Consensus 147 iNdkan~RvAri~l~~~~~d~Ii~i-------Pn~~~~Hg~~~~~~p------~T~yv~~~~e~~~P~pndg~~~~~~~~ 213 (638)
T 3sbq_A 147 INDKANSRVARIRLDIMKCDKMITV-------PNVQAIHGLRLQKVP------HTKYVFANAEFIIPHPNDGKVFDLQDE 213 (638)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC-------TTCSCEEEEEECCSS------BCCEEEEEECSCEESSCSSSCCCTTST
T ss_pred EecCCCcceEEEECCcEeeceeEeC-------CCCcCcccccccccC------CccEEEecceeeccCCCCCcccccCCh
Confidence 855 667888888888777766665 333456556554210 1125555543 22110
Q ss_pred -EEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCC---------------eEEEEECCC-------
Q 014114 137 -MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---------------EVNVWDLDK------- 193 (430)
Q Consensus 137 -v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~v~iwd~~~------- 193 (430)
-|.+ +.... .+..--.|++.-.+........+++.+.++.+++. .+.++|+..
T Consensus 214 ~~y~~-f~~iD---~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~ 289 (638)
T 3sbq_A 214 NSYTM-YNAID---AETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKA 289 (638)
T ss_dssp TEEEE-EEEEE---TTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHT
T ss_pred hhceE-EEEEc---CCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhc
Confidence 0100 00000 00111134443344444555566777766654321 366666531
Q ss_pred Cc-------eeeeecCCC----CCCC--CcccCcceeEeEEeeCCCCCEEEEEe-CCCcEEEEECCCC-----------C
Q 014114 194 CE-------KIWTAKPPP----KNSL--GIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ-----------R 248 (430)
Q Consensus 194 ~~-------~~~~~~~~~----~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~-----------~ 248 (430)
|+ -+..+.... ...+ -+..+.....+.. +|||+++++++ .+.++.++|.... +
T Consensus 290 G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~v--sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~ 367 (638)
T 3sbq_A 290 GDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNT--SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPR 367 (638)
T ss_dssp TCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGG
T ss_pred CCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceee--CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcc
Confidence 11 011121111 0001 0112334556677 89999988766 5789999998741 1
Q ss_pred cc-eEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC----------eEEeEEeccccCcEEEEEE------cC
Q 014114 249 RP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------KLLGCFIGKCSGSIRSIAR------HP 311 (430)
Q Consensus 249 ~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~v~~i~~------s~ 311 (430)
.. +...+. .-.....+|.++|....+-..|..|..|++... ..+.++.-| - .+-.+.- .|
T Consensus 368 ~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-Y-qpGH~~~~~get~~~ 444 (638)
T 3sbq_A 368 DVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-Y-QPGHLHASLCETNEA 444 (638)
T ss_dssp GGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-S-CEEEEEETTTTSTTC
T ss_pred cceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc-c-CCcccccCCCccCCC
Confidence 11 112222 234567899999966667779999999999753 456666655 2 2233333 57
Q ss_pred CCCEEEEEe
Q 014114 312 TLPIIASCG 320 (430)
Q Consensus 312 ~~~~l~s~~ 320 (430)
+|++|++..
T Consensus 445 dGk~lv~ln 453 (638)
T 3sbq_A 445 DGKWLVALS 453 (638)
T ss_dssp CSCEEEEEE
T ss_pred CccEEEEec
Confidence 899999875
No 348
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.30 E-value=9.9 Score=32.74 Aligned_cols=212 Identities=8% Similarity=0.033 Sum_probs=107.3
Q ss_pred CCCceEEEEccCCeEEEeccCCCceeeee-eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
|+.+++++.+.+|.|+--.+...+....- .+..... ...++.+..+...+.+. .++..+..|.+.-....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-~ke~D~l~~~~~~~~~~--------~ll~fT~~G~~~~~~~~ 71 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR-IKEEDFIDRLLVANTHD--------HILCFSSRGRVYSMKVY 71 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--------EEEEEETTSEEEEEEGG
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeee-eCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEhh
Confidence 35567889999999987766442221110 0100000 12335565555444433 78888888887666654
Q ss_pred eecccccCCcce-e-eEEeeccCCceEEEEE-c--CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcce
Q 014114 142 VTKVSAESSCST-V-KSWNVCASGTIAFSKV-D--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 142 ~~~~~~~~~~~~-i-~~~~~~~~~~i~~~~~-~--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
.-+.......+. + .+..+..+..|..+.. . .++.+++..+..|.++...+..-..... .+ .....+...+.+
T Consensus 72 elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-~G--~~~i~l~~~d~l 148 (307)
T 1zi0_A 72 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AG--KVAIKLVDGDEL 148 (307)
T ss_dssp GSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-TC--EESSCCCTTCCE
T ss_pred HCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-CC--eEEEEECCCCEE
Confidence 333322111111 1 1223344555665543 2 2456788899999999987643211100 00 000001111334
Q ss_pred eEeEEeeCCCCCEEEEEeCCCcEEEEECCCC----C--cceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc
Q 014114 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~--~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~ 288 (430)
..+... .....++..+.+|.+..++...- + .-+..+.. ....|.++...+++..|++.+..|.++-.++.
T Consensus 149 v~~~~~--~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 149 IGVDLT--SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEE--CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEe--CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 444442 34456777788999888876431 1 01111111 23456666555555678888888988887763
No 349
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.70 E-value=11 Score=32.53 Aligned_cols=213 Identities=13% Similarity=0.113 Sum_probs=110.1
Q ss_pred CCCceEEEEccCCeEEEeccCCCceeee-eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEee
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~ 141 (430)
|+.+++++.+.+|.|+--.+...+.... -.+..... ...++.+..+...+.+. .++..+..|.++-....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-lke~D~l~~~~~~~~~~--------~ll~~T~~G~~~~~~~~ 76 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFD-LNDGDEIVIALCVNTHD--------YLFMISNEGKLYLINAY 76 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCC-CCTTCCEEEEEEEETTC--------EEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecc-cCCCCEEEEEEEECCCC--------EEEEEECCCeEEEEEHH
Confidence 3456788999999999876644322111 00110000 12345666555555433 78888888887776654
Q ss_pred eecccccCCcce--eeEEeeccCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcce
Q 014114 142 VTKVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 142 ~~~~~~~~~~~~--i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
.-+...-...+. .....+..+..|..+...+ +..+|+..+..|.++...+..-.... ........+...+.+
T Consensus 77 ~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---~~G~~~i~L~~~d~l 153 (312)
T 1suu_A 77 EIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---SRGVIVIKLNDKDFV 153 (312)
T ss_dssp GSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCE
T ss_pred HCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---CCcEEEEecCCCCEE
Confidence 322211000000 0112223344555543322 45678888999999988874321110 000000011112445
Q ss_pred eEeEEeeCCCCCEEEEEeCCCcEEEEECCCC----C--cceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccC
Q 014114 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~--~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 289 (430)
..+... .....++..+.+|.+..+....- + .-+..+.. ....|.++..-.++..|++.+..|..+..++..
T Consensus 154 v~~~~~--~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 154 TSAEIV--FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEE--CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEe--CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 555542 33556778889999999887531 1 11122221 234566665545566788888899888888753
No 350
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.57 E-value=12 Score=32.88 Aligned_cols=60 Identities=5% Similarity=-0.047 Sum_probs=38.7
Q ss_pred CcEEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCccee
Q 014114 302 GSIRSIARHP-------TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 302 ~~v~~i~~s~-------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~ 361 (430)
..+..++|.. ++.++++.-..+.|...++..++.+....+-......+..+++.|||.+.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ly 337 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLY 337 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEE
Confidence 3567788864 46667666677888888887665443322211212346899999999983
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.94 E-value=11 Score=36.74 Aligned_cols=151 Identities=12% Similarity=0.098 Sum_probs=80.2
Q ss_pred CCCEEEEecCC------CeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCC--cEEEEEC
Q 014114 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDT 244 (430)
Q Consensus 173 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~~wd~ 244 (430)
++.+++.|+.+ +.+.+||+.+.+=...-..+. +..-.+++. -.++.+++.|+.++ .+.+||+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~--------~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH--------TRFRHSACS--LPDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB--------CCBSCEEEE--CTTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC--------CcccceEEE--EcCCEEEEECCCCCCCCEEEEEC
Confidence 66677777653 357888887753221111110 011122222 13778888887655 6899998
Q ss_pred CCCCcceEEeee------cCCCeEEEEeeCC-CCEEEEEcC--C-----CCEEEEEccCCeE-----EeEEec---cccC
Q 014114 245 SAQRRPVMSFDF------RETPIKAVAEEPD-SFNIYIGNG--S-----GDLASVDIRTGKL-----LGCFIG---KCSG 302 (430)
Q Consensus 245 ~~~~~~~~~~~~------~~~~i~~~~~s~~-~~~l~~~~~--d-----g~v~iwd~~~~~~-----~~~~~~---~~~~ 302 (430)
.+.. -..+.. ......++.+..+ +.+++.|+. + ..+.+||+.+.+- ...+.. ....
T Consensus 521 ~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~ 598 (695)
T 2zwa_A 521 TEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY 598 (695)
T ss_dssp TTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB
T ss_pred CCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc
Confidence 8732 111111 1122233555555 667777765 2 3488999987661 122211 1011
Q ss_pred cEEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCcee
Q 014114 303 SIRSIARHPTLPIIASCGLD--------SYLRFWDIKTRQLL 336 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d--------~~v~iwd~~~~~~~ 336 (430)
....+.+ .++.+++.|+.+ ..|.+||+.+.+-.
T Consensus 599 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 599 GSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 1222233 336777777743 45999999877654
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.79 E-value=15 Score=31.94 Aligned_cols=175 Identities=8% Similarity=0.052 Sum_probs=94.2
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecC
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
+..|..+....... ....++..+..|.++...+..-.... . .-+....+..+..+..+........|+..+.
T Consensus 94 ~e~i~~~~~~~~~~-----~e~~~v~~T~~G~iKr~~l~~~~~~~--r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~ 165 (327)
T 3uc1_A 94 EERIAQVIQIRGYT-----DAPYLVLATRNGLVKKSKLTDFDSNR--S-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSA 165 (327)
T ss_dssp TCCEEEEEEESSTT-----SSSEEEEEETTSEEEEEEGGGGCCCC--S-SCEESCBCCTTCCEEEEEEECTTCEEEEEET
T ss_pred CCEEEEEEEeccCC-----CCCEEEEEcCCCEEEEeEHHHhhccc--c-CceEEEEECCCCEEEEEEEecCCCEEEEEEC
Confidence 45676666554321 23489999999999988875432111 0 1122223333455555544445567777888
Q ss_pred CCeEEEEECC--CCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCC------cceEEe
Q 014114 183 GVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSF 254 (430)
Q Consensus 183 dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~ 254 (430)
.|.+..+... .-..... .........+.....|.++.. -+.+..++..+..|.++.-.+.... .-+..+
T Consensus 166 ~G~~~rf~~~~~eip~~gr-~a~Gv~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 166 NGQSIRFSATDEALRPMGR-ATSGVQGMRFNIDDRLLSLNV--VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp TSEEEEEECCTTTSCCCCT-TSBCEESSCCCTTCCEEEEEE--CCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred CCeEEEEECcccccCcCCc-CCCCeeeecCCCCCEEEEEEE--ECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 9998888876 3111100 000000111122245666665 3455688888999999988764321 112222
Q ss_pred eec--CCCeEEEEeeCCCCEEEEEcCCCCEEEEEcc
Q 014114 255 DFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 255 ~~~--~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~ 288 (430)
... ...+..+....+...++..+.+|.+.-++..
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 211 2344444443344456666677777777654
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.56 E-value=34 Score=34.85 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=33.1
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 297 (430)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777778888899999999999999999999988754
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.43 E-value=18 Score=31.48 Aligned_cols=251 Identities=9% Similarity=0.036 Sum_probs=124.2
Q ss_pred ceEEEEccCCeEEEeccCCCceeee-eeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeec
Q 014114 66 PLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~ 144 (430)
+.+++-+.+|.|+--.+.+.+.... -.+..... ..+++.+..+.....+. .++.-+..|.++-..+..-+
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~-~ke~D~~~~~~~~~t~d--------~ll~fT~~Gr~y~~~~~~lp 74 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAG-LKQDDIVAHFFVCSTHD--------LILFFTTQGRVYRAKAYDLP 74 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CC-CCGGGCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccc-cCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCc
Confidence 4678888889888665432111000 00000000 11234555444444333 67777777776655543333
Q ss_pred ccccCCcc-ee-eEEeeccCCceEEEE-EcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEe
Q 014114 145 VSAESSCS-TV-KSWNVCASGTIAFSK-VDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 145 ~~~~~~~~-~i-~~~~~~~~~~i~~~~-~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
.......+ ++ .+..+..+..|..+. +.. +..+++..+.+|.++...+..-..... .+ .....+...+.+..+
T Consensus 75 ~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G--~~~i~lke~D~lv~~ 151 (327)
T 3uc1_A 75 EASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GG--IVAVNLRDNDELVGA 151 (327)
T ss_dssp BCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SC--EESCBCCTTCCEEEE
T ss_pred CCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-Cc--eEEEEECCCCEEEEE
Confidence 22111111 11 122333345555553 332 578999999999999988754221110 00 000011112445555
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEECC--CC----Cc--ceEEeee-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC
Q 014114 220 AFLSIDDHRKFVAGTNDHQVRLYDTS--AQ----RR--PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290 (430)
Q Consensus 220 ~~~~~~~~~~l~~~~~dg~i~~wd~~--~~----~~--~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 290 (430)
... .....|+..+..|.+..+... .- +. -+..+.. ....|.++...+.+.+|+..+..|.++.-.+...
T Consensus 152 ~~~--~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 152 VLC--SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp EEE--CTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEe--cCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 442 345677778899999888776 21 10 0111111 2345666666556668888999999888776432
Q ss_pred e---------EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 291 K---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 291 ~---------~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
. ....+... .+.+..+....+...++..+.+|.+.-++..
T Consensus 230 ~~~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 230 PVQGRGGKGVLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CBCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred cccCcCCCcEEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 1 11122221 2334444333334455555666666666554
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.42 E-value=20 Score=31.96 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=97.5
Q ss_pred eEEEEECCCC--ceeeeecCCCCCCCCcccCcceeEeEEe-eCCC----CCEEEEEe-CCCcEEEEECCCCCcceEEee-
Q 014114 185 EVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFL-SIDD----HRKFVAGT-NDHQVRLYDTSAQRRPVMSFD- 255 (430)
Q Consensus 185 ~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~- 255 (430)
+|.+||+.+. +.++.+.-+..... ....+..+.+. ..+. +.+++.+. ....|.++|+.+++. .+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~---~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE---KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC---CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc---cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccC
Confidence 6888999998 88877765432111 12457788874 1122 33444443 467899999987553 22211
Q ss_pred -------------ec----CCCeEEEEeeCC----CCEEEEEcCCCCEEEEEccC-----C---eEEeEEeccc--cCcE
Q 014114 256 -------------FR----ETPIKAVAEEPD----SFNIYIGNGSGDLASVDIRT-----G---KLLGCFIGKC--SGSI 304 (430)
Q Consensus 256 -------------~~----~~~i~~~~~s~~----~~~l~~~~~dg~v~iwd~~~-----~---~~~~~~~~~~--~~~v 304 (430)
+. ...+..|+++|+ ++.|+-....+. ++|.+.+ . ..+.. .+.. ...-
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~ 277 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDA 277 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCE
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEE-eeecCCCCCc
Confidence 00 246788899987 677777665543 4444331 1 11111 1210 1334
Q ss_pred EEEEEc-CCCCEEEEEeCCCeEEEEeCCCC----ceeeEEeeccccceeEEEeeecCCcce-eeec
Q 014114 305 RSIARH-PTLPIIASCGLDSYLRFWDIKTR----QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 305 ~~i~~s-~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~i~~~~~s~~g~~-~~~~ 364 (430)
..+++. .+|.++++--....|..|+..+. +.+..+.... .-.....+.+.++|.+ +...
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 456775 67877777778899999998651 2233332222 1222566777777766 4443
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=84.26 E-value=19 Score=30.97 Aligned_cols=205 Identities=8% Similarity=0.035 Sum_probs=110.7
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCcee-eeecC
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~ 202 (430)
..+++.+.+|.++-..+..-....... .-+....+..+..+..+........++..+..|.++-+....-... +.-.+
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~-~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG-KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC-CCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC-CCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 378888999999877764322111000 0111122233444555444445566777788888777765321000 00000
Q ss_pred CC-CCCCCcccCcceeEeEEeeC-CCCCEEEEEeCCCcEEEEECCCCCc----ceE--EeeecCCCeEEEEeeCCCCEEE
Q 014114 203 PP-KNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRR----PVM--SFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 203 ~~-~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~----~~~--~~~~~~~~i~~~~~s~~~~~l~ 274 (430)
.. .....+.....|.++..... .+..+|+..+..|.++...+..... -+. .+.. ...+..+........++
T Consensus 88 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~ 166 (312)
T 1suu_A 88 QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVI 166 (312)
T ss_dssp CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEE
T ss_pred cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEE
Confidence 00 00011111234544433211 1456788889999999988753211 011 1222 34566655555556788
Q ss_pred EEcCCCCEEEEEccC---------CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 275 IGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 275 ~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
..+.+|.+..+.... |.....+.. ...|.++..-.++..|++.+..|.....++..
T Consensus 167 l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 167 CLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 888999988887753 222333333 45666766655666788888999999888754
No 357
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.66 E-value=21 Score=30.13 Aligned_cols=206 Identities=10% Similarity=-0.020 Sum_probs=111.2
Q ss_pred CCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcC-CCCEEEEec
Q 014114 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG 181 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 181 (430)
++.+..+...+.+. .++.-+..|.++--.+..-+..... . + +..+..|..+.... +..+++..+
T Consensus 23 gD~~~~~~~~~t~~--------~ll~fT~~G~v~~~~~~~lp~~~~~--~---l--l~~~e~i~~v~~~~~~~~~~v~~T 87 (276)
T 3no0_A 23 KAPVVNILRVPFTE--------GLFLVSNRGRVYWIAGSQALQGSKV--S---L--KSREEKIVGAFIREKFGNRLLLAT 87 (276)
T ss_dssp CCCEEEEEEEETTS--------CEEEEETTSEEEEECSHHHHTSEEC--C---C--SSTTCCEEEEEEGGGSCSEEEEEE
T ss_pred CCeEEEEEEECCCC--------EEEEEcCCCeEEEEEhhhCccCccc--c---c--CCCCCEEEEEECCcCCCCEEEEEe
Confidence 35666555544433 6777777887765544332322111 1 2 44456666664421 467899999
Q ss_pred CCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCC----C--cceEEee
Q 014114 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFD 255 (430)
Q Consensus 182 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~--~~~~~~~ 255 (430)
.+|.++...+..-. ... .......+...+.+..+.. ......++..+..|.++.+....- + .-+..+.
T Consensus 88 ~~G~iKr~~l~~~~-~~~---~G~~~i~lkegD~l~~~~~--~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~ 161 (276)
T 3no0_A 88 KKGYVKKIPLAEFE-YKA---QGMPIIKLTEGDEVVSIAS--SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK 161 (276)
T ss_dssp TTSEEEEEEGGGTT-TCS---TTEECSCCCTTCCEEEEEE--CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC
T ss_pred CCCEEEEEEHHHhh-hhc---CCeEEEecCCCCEEEEEEE--eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc
Confidence 99999999875532 100 0000111112244555555 345567888889999988876421 1 0011111
Q ss_pred e-cCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCC-------eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 014114 256 F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 256 ~-~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~i 327 (430)
. ....|..+...+++..++..+..|.++...+..- +-+..+. . .+.+..+....+...++..+.+|.+..
T Consensus 162 L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~-~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 162 LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-T-KDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-S-SSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-C-CCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 1 2345666655556678888899999988876432 1122221 1 334444433333334555566666666
Q ss_pred --EeCC
Q 014114 328 --WDIK 331 (430)
Q Consensus 328 --wd~~ 331 (430)
+++.
T Consensus 240 ~~~~~~ 245 (276)
T 3no0_A 240 DKINQK 245 (276)
T ss_dssp EEEEGG
T ss_pred eeeCHH
Confidence 6543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.55 E-value=13 Score=37.91 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
..+.+++..++..++++-+.|+++|+|++.+++++.+..+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3577788888889999999999999999999998887543
No 359
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=82.53 E-value=26 Score=31.08 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=87.4
Q ss_pred CCCceEEEEccCCeEEEeccCCC-------ceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCee
Q 014114 63 QNDPLLAVARKNGLTDILNPLNG-------DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 135 (430)
|+.+++++.+.+|.|+--.+... +-+..+.. ..++.+..+...+.+. .++..+..|.+
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~t~d--------~ll~fT~~G~~ 69 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVNTHD--------TLLTFTSSGKV 69 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEECTTC--------EEEEEETTSEE
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEecCCC--------EEEEEeCCCeE
Confidence 56678999999999997654321 11122221 2335666555555433 67777888887
Q ss_pred EEEEeeeecccccCCcc--eeeEEeeccCCceEEEEEcC---CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCc
Q 014114 136 SMRSIEVTKVSAESSCS--TVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 136 ~v~~~~~~~~~~~~~~~--~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 210 (430)
.-.....-+.......+ .+.+..+..+..|.++..-. .+.+|+.++..|.++...+..-.... ........+
T Consensus 70 ~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~---~~G~~ai~L 146 (370)
T 3l6v_A 70 FWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL---ARGKIAINL 146 (370)
T ss_dssp EEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC---TTCEESSCC
T ss_pred EEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc---CCceEEEEe
Confidence 76654433322111111 12233344455566554322 45689999999999998875322110 000000011
Q ss_pred ccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECC
Q 014114 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 245 (430)
...+.+..+... .....++..+.+|.+..+...
T Consensus 147 ~~~d~lv~v~~~--~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 147 DEGDALVGVALT--DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CTTCCEEEEEEE--CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEEEe--CCCceEEEEeCCCeEEEEEcc
Confidence 112344444442 345567777889988888754
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=80.59 E-value=6.1 Score=37.58 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=44.1
Q ss_pred eEEEEeeCCCCEEEEEcCC------------CCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEE
Q 014114 261 IKAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 261 i~~~~~s~~~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 319 (430)
.-.|+|+|.|++++.-..+ +.+.+.+..+++....+.++....++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654322 2356667777888777777667899999999999877665
No 361
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=80.11 E-value=28 Score=29.90 Aligned_cols=198 Identities=9% Similarity=-0.020 Sum_probs=103.2
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECC---C------C
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD---K------C 194 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~---~------~ 194 (430)
..+++.+.+|.++--.+..-....... .-+.......+..+..+........|+..+..|.++-+... . |
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~-~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGG-KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCC-CCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 367888899999877654322110000 01111122223444444444445566667778886666542 2 1
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeC-CCCCEEEEEeCCCcEEEEECCCCC----cceEE--eeecCCCeEEEEee
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQR----RPVMS--FDFRETPIKAVAEE 267 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~--~~~~~~~i~~~~~s 267 (430)
..+..+- .+.....|.++..... .++.+++..+.+|.++...+.... .-+.. +..+ +.+..+...
T Consensus 83 ~~i~~~l-------~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~ 154 (307)
T 1zi0_A 83 RPIVNLL-------PLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLT 154 (307)
T ss_dssp EEGGGTS-------CCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEE
T ss_pred eEhhhcc-------CCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEe
Confidence 1111110 1111234555433211 345678888999999998775211 11111 2223 455555554
Q ss_pred CCCCEEEEEcCCCCEEEEEccC---------CeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 014114 268 PDSFNIYIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~ 332 (430)
.....|+..+.+|.+..++... |.....+.. ...|.++...+++..|++.+..|.++-.++..
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 4555777788888888877642 222222332 45677776655666788889999988887643
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.71 E-value=31 Score=29.11 Aligned_cols=183 Identities=9% Similarity=-0.021 Sum_probs=85.5
Q ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEE
Q 014114 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd 243 (430)
.|..++.... ..++. . ||.|+.|-......+-. + ......|..++. . ....++. . ||.|+.|-
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~---p------~~~~~~i~~ia~--G-~~hs~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTM---P------AATQSGVDAIAA--G-NYHSLAL-K-DGEVIAWG 87 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSC---C------GGGGSCCCEEEE--C-SSEEEEE-E-TTEEEEEE
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCC---C------ccCCCCEEEEEe--C-CCEEEEE-E-CCEEEEee
Confidence 4555555432 23333 4 88888887654221110 0 001134666665 2 2233343 4 89999998
Q ss_pred CCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEeCCC
Q 014114 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~ 323 (430)
.....+.-.. ..-...|..|+...+ ..+.-. +|.|..|=....-.+..-... ...|..|+.-... .+.-. ||
T Consensus 88 ~n~~Gqlg~P-~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~-~~~i~~i~~G~~~--~~~l~-~G 159 (282)
T 3qhy_B 88 GNEDGQTTVP-AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEA-QSGVTALDGGVYT--ALAVK-NG 159 (282)
T ss_dssp CCTTSTTCCC-GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGG-GSSEEEEEECSSE--EEEEE-TT
T ss_pred CCCCCCCCCC-cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccC-CCCeEEEEcccCE--EEEEE-CC
Confidence 7653221100 001235777766544 333334 888888865432111111111 3456666653332 22223 68
Q ss_pred eEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEEecCCC
Q 014114 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 324 ~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~vw~~~~ 376 (430)
.|+.|-......+.. +......|..++-.....++. .+|.|..|-.+.
T Consensus 160 ~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 160 GVIAWGDNYFGQTTV---PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp EEEEEECCTTSTTSC---CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred EEEEecCCCCCCCCC---ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 888886543222221 111122244554443333322 477777776654
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=77.13 E-value=36 Score=29.49 Aligned_cols=215 Identities=10% Similarity=0.020 Sum_probs=105.3
Q ss_pred ceEeecCCCcEEEEEecCccCCcchhheecCCCCcceEEEEeccCCCCCCceEEEEccCCeEEEec---cCCCceee-ee
Q 014114 16 RALTFDSLGLIKVIEARGEDGGVPKVVERWGDPHSSKCVLAASIDDSQNDPLLAVARKNGLTDILN---PLNGDLRV-AI 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd---~~~~~~~~-~~ 91 (430)
.+++.+.+|.|+--.+..-... ......+...+.-+.+..... .+.|+..+..|.+.-.. +....... -.
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~-~~~~~~lke~D~l~~~~~~~t-----~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAAS-NGQDFAMKDTDRLLAMLEMNT-----KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHT-TTCCCCCCTTCCEEEEEEEET-----TSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEEEeCCCEEEEeEHHHhhhc-CccccccCCCCEEEEEEEECC-----CCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4788899999998776521000 000112333333222222222 23577777778754443 32221000 00
Q ss_pred eecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEc
Q 014114 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
....... ...+..|..+...+... .+..++..+..|.++...+..-..... ..-+....+..+..+..+...
T Consensus 81 ~i~~~i~-L~~~e~Iv~~~~~~~~~-----~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~~~~~ 152 (323)
T 1wp5_A 81 HIANIIP-IDRDEEIIKAIPINDFE-----LNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVDVHLT 152 (323)
T ss_dssp EGGGTSC-CCTTCCEEEEEEESCTT-----SSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEEEEEE
T ss_pred ChhhccC-CCCCCEEEEEEEecccC-----CCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEEEEEe
Confidence 0001111 12334676655544211 234789999999999998753322110 112223333334555555554
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 172 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
.....|+..+.+|.+..+....-..... .........+.....|.++... .++...+++.+..|..+..++..
T Consensus 153 ~~~~~i~l~T~~G~~irf~~~ev~~~gR-~a~GV~~i~L~~~d~Vv~~~~~-~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 153 DGMNELFLVTHNGYALWFDESEVSIVGV-RAAGVKGMNLKEGDYIVSGQLI-TSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSCSEEEEEETTSEEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEE-CCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHHCcccCC-CCcCEEEEEeCCCCEEEEEEEE-cCCCcEEEEEECCCceEEEEHHH
Confidence 4556777788899988887753211100 0000011111122456666543 33332688888899888877653
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.91 E-value=14 Score=38.46 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
.+.+++..++..++++-+.|+++|||++.+++++.+..+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445566677888999999999999999999998887543
No 365
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.03 E-value=43 Score=28.95 Aligned_cols=209 Identities=12% Similarity=0.108 Sum_probs=108.8
Q ss_pred CCCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeee
Q 014114 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 142 (430)
|+.+++++.+.+|.|+--.+...+.. ..... ....++.+..+...+.+. .++..+..|.+.-..+..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~----~~~~~-~lke~D~l~~~~~~~t~d--------~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS----NGQDF-AMKDTDRLLAMLEMNTKD--------VLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT----TTCCC-CCCTTCCEEEEEEEETTS--------EEEEEETTSEEEEEEGGG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc----Ccccc-ccCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEHHH
Confidence 45567889999999987654322110 00000 112345665555555443 788888888876666543
Q ss_pred ecccccCCcce-e-eEEeeccCCceEEE-EEcC--CCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcccCccee
Q 014114 143 TKVSAESSCST-V-KSWNVCASGTIAFS-KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 143 ~~~~~~~~~~~-i-~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
-+.......+. + ....+..+..|..+ .... ++.+++..+..|.++...+..-..... ........+...+.+.
T Consensus 70 lp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv 147 (323)
T 1wp5_A 70 LPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVV 147 (323)
T ss_dssp SCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEE
T ss_pred CcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEE
Confidence 33321111111 1 12233344555554 3332 256788899999999988753211110 0000000111113344
Q ss_pred EeEEeeCCCCCEEEEEeCCCcEEEEECCCC----C--cceEEeee-cCCCeEEEEeeCCCC-EEEEEcCCCCEEEEEcc
Q 014114 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSF-NIYIGNGSGDLASVDIR 288 (430)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~--~~~~~~~~-~~~~i~~~~~s~~~~-~l~~~~~dg~v~iwd~~ 288 (430)
.+.. ......++..+.+|.+..+....- + .-+..+.. ....|.++..-+++. .|++.+..|..+..++.
T Consensus 148 ~~~~--~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 148 DVHL--TDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEE--ECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEE--eCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 4444 234556777889999988876431 1 11222222 234566665444444 67778888887777764
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.21 E-value=21 Score=33.68 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=42.9
Q ss_pred CeEEEEeeCCCCEEEEEcC------------CCCEEEEEccCCeEEeEEeccccCcEEEEEEcCCCCEEEEEe
Q 014114 260 PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~ 320 (430)
....|.|.++|.+.++... ...|..++..++++...+.+.....++.++|+||++.|+.+-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899999977663321 125677777778776666543246799999999998877663
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.69 E-value=11 Score=39.28 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=31.6
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEe
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 297 (430)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455666788899999999999999999999988754
No 368
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.12 E-value=63 Score=29.61 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=36.1
Q ss_pred ceEEeeecC-CCeEEEEeeC-------CCCEEEEEcCCCCEEEEEccCCeE---EeEE-ec-------cccCcEEEEEEc
Q 014114 250 PVMSFDFRE-TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKL---LGCF-IG-------KCSGSIRSIARH 310 (430)
Q Consensus 250 ~~~~~~~~~-~~i~~~~~s~-------~~~~l~~~~~dg~v~iwd~~~~~~---~~~~-~~-------~~~~~v~~i~~s 310 (430)
|+..+..|. .++..+.|-. .+.+|+ +...+.|....+..... ...+ .+ .....+..+.+.
T Consensus 266 P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~ 344 (463)
T 2wg3_C 266 SLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED 344 (463)
T ss_dssp CCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred CeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence 455554332 4677777743 233444 44447666555543221 1112 11 113578999999
Q ss_pred CCCCEEEEEe
Q 014114 311 PTLPIIASCG 320 (430)
Q Consensus 311 ~~~~~l~s~~ 320 (430)
|||.++++..
T Consensus 345 pdG~Lyv~~~ 354 (463)
T 2wg3_C 345 ELGEVYILSS 354 (463)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEec
Confidence 9998877765
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.53 E-value=23 Score=33.70 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=39.7
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 303 SIRSIARHPTLPIIASCGLD------------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 303 ~v~~i~~s~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
..-.|+|+|.|.+++.-..+ ..+.+.+..+++...- +.++.++.++.++|+||++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf--~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRF--MVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEE--EECCTTCEEEEEEECTTSSE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEE--EeCCCCccCcCeeECCCCCE
Confidence 34678999999866654322 2456667666766544 55666777899999999987
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=62.21 E-value=84 Score=27.77 Aligned_cols=199 Identities=10% Similarity=-0.000 Sum_probs=107.3
Q ss_pred ceEEEEccCCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCC---------C
Q 014114 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---------C 194 (430)
Q Consensus 124 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~ 194 (430)
..+++.+.+|.++--.+......... ..-+....+.....+..+........|+..+..|.++-+.... |
T Consensus 8 ~~~v~lT~~GyIKr~~l~~y~~~~r~-g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G 86 (370)
T 3l6v_A 8 DVVVTLSHAGYAKRQPVSAYRAQRRG-GRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG 86 (370)
T ss_dssp CEEEEEESSCEEEEEEHHHHHHTCCC-CCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred CEEEEEeCCCEEEEeeHHHhhhhccC-CCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC
Confidence 37888999999987765432211100 0012223333445555555554556677777888877665421 2
Q ss_pred ceeeeecCCCCCCCCcccCcceeEeEEeeC-CCCCEEEEEeCCCcEEEEECCCCCc----ceEEeee-cCCCeEEEEeeC
Q 014114 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQRR----PVMSFDF-RETPIKAVAEEP 268 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~-~~~~i~~~~~s~ 268 (430)
..+..+- .+.....|.++..... .+..+|+.++..|.++...+..... -+..+.. ....+..+....
T Consensus 87 ~~i~~ll-------~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 87 RPIINWI-------PLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD 159 (370)
T ss_dssp EEGGGSC-------CCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred cCHhhcc-------CCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC
Confidence 2211110 0111244555543211 2456899999999999988653211 1111111 134455555544
Q ss_pred CCCEEEEEcCCCCEEEEEccC---------CeEEeEEeccccCcEEEEEEcC----------------------------
Q 014114 269 DSFNIYIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHP---------------------------- 311 (430)
Q Consensus 269 ~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~v~~i~~s~---------------------------- 311 (430)
....|+..+..|.+..++... |-....+.. ...|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK--GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEECCC--------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC--CCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 555777788888887777542 212222322 34555554443
Q ss_pred -------CCCEEEEEeCCCeEEEEeCCC
Q 014114 312 -------TLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 312 -------~~~~l~s~~~d~~v~iwd~~~ 332 (430)
++..+++.+..|..+...+..
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGG
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHH
Confidence 446788999999988887654
No 371
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=60.53 E-value=91 Score=27.65 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=78.3
Q ss_pred cEEEEECCCC--CcceEEeeec------CCCeEEEEee---CC----CCEEEEEc-CCCCEEEEEccCCeEEeEEecc--
Q 014114 238 QVRLYDTSAQ--RRPVMSFDFR------ETPIKAVAEE---PD----SFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-- 299 (430)
Q Consensus 238 ~i~~wd~~~~--~~~~~~~~~~------~~~i~~~~~s---~~----~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-- 299 (430)
+|.+||+.+. + .++.+... .+.+..+++. |. +.+++... ..+.|.++|+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~-li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYP-EVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCC-EEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCce-eEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 4566777765 3 34444431 2457778877 22 33444443 4567999999988765544210
Q ss_pred ---------------ccCcEEEEEEcCC----CCEEEEEeCCCeEEEEeCC-----CCceeeEEeeccccc--eeEEEee
Q 014114 300 ---------------CSGSIRSIARHPT----LPIIASCGLDSYLRFWDIK-----TRQLLSAVFLKQHLN--EVVFDSA 353 (430)
Q Consensus 300 ---------------~~~~v~~i~~s~~----~~~l~s~~~d~~v~iwd~~-----~~~~~~~~~~~~~~~--~~i~~~~ 353 (430)
-...|..|+++|+ ++.|.-....+ -++|.+. .......+..-+... .....++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 0247889999998 67776665444 2334332 221111111112211 2224567
Q ss_pred ec-CCcce-eeecCCCcEEEecCCC
Q 014114 354 FA-DKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 354 ~s-~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
+. .+|.+ ++--..+.|..|+...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 75 67887 7778889999999875
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=60.12 E-value=16 Score=35.52 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEee
Q 014114 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 341 (430)
..|.++.+ +..++++-+.|..+|+|++.+++++....+
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666555 467999999999999999999999988766
No 373
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=58.71 E-value=81 Score=26.47 Aligned_cols=207 Identities=10% Similarity=-0.033 Sum_probs=103.3
Q ss_pred CCeeEEEEeeeecccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeecCCCCCCCCcc
Q 014114 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 132 ~g~i~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 211 (430)
+|.+..|-........ + .......|..++.... ..++. . ||.|+.|-......+-. + ..
T Consensus 41 ~G~v~~wG~n~~Gqlg--------~-p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~---P----~~-- 99 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLT--------M-PAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV---P----AE-- 99 (282)
T ss_dssp TTEEEEEECCSSSTTS--------C-CGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC---C----GG--
T ss_pred CCEEEEEeCCCCCCCC--------C-CccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC---C----cc--
Confidence 8888888754322110 0 0011235666666532 33333 4 89999997654222110 0 00
Q ss_pred cCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCcceEEeeecCCCeEEEEeeCCCCEEEEEcCCCCEEEEEccCCe
Q 014114 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 291 (430)
....|..++. . ....+.-. +|.|+.|-.....+.-. .......|..|+...+. .++ -. ||.|..|-....-
T Consensus 100 ~~~~v~~ia~--G--~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 100 ARSGVDAIAA--G--AWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GSSSEEEEEE--E--TTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTS
T ss_pred cCCCeEEEEC--c--CCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCC
Confidence 0134666666 2 23333445 99999998765332111 11122456666654332 222 23 6888888654322
Q ss_pred EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcceeeecCCCcEEE
Q 014114 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~~~~~~d~~v~v 371 (430)
.+. +.......|..|+.-.... ++. .||.|+.|=....-.+.. +......|..++-.....+ +.. |+.|..
T Consensus 171 qlg-~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~h~~-al~-~g~v~~ 241 (282)
T 3qhy_B 171 QTT-VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV---PTEALSGVSAIASGEWYSL-ALK-NGKVIA 241 (282)
T ss_dssp TTS-CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC---CGGGGSSCCEEEECSSCEE-EEE-TTEEEE
T ss_pred CCC-CceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC---CcccCCCceEEEcCCCEEE-EEE-CCEEEE
Confidence 111 1111135677777644332 333 599999997554332221 1111122455554443333 333 899999
Q ss_pred ecCCCC
Q 014114 372 QNGNDT 377 (430)
Q Consensus 372 w~~~~~ 377 (430)
|-.+..
T Consensus 242 wG~n~~ 247 (282)
T 3qhy_B 242 WGSSRT 247 (282)
T ss_dssp ESTTCC
T ss_pred ecCCCC
Confidence 988763
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=57.09 E-value=86 Score=26.28 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=90.5
Q ss_pred CCceEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeee
Q 014114 64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT 143 (430)
Q Consensus 64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~ 143 (430)
+.++++..+.+|.|+-..+..-. .. -.+..... ...++.+..+...+.. ..++..+..|.+..+.+..-
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~-~~-~~G~~~i~-lkegD~l~~~~~~~~~--------~~ill~T~~G~~~r~~~~ei 147 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFE-YK-AQGMPIIK-LTEGDEVVSIASSVDE--------THILLFTKKGRVARFSVREV 147 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTT-TC-STTEECSC-CCTTCCEEEEEECCSS--------CEEEEEETTSEEEEEEGGGS
T ss_pred CCCEEEEEeCCCEEEEEEHHHhh-hh-cCCeEEEe-cCCCCEEEEEEEeCCC--------CEEEEEECCCEEEEEEhhhC
Confidence 34689999999999998875543 11 11111111 1234567665554433 27888889999888876544
Q ss_pred cccccCCcceeeEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCc-------eeeeecCCCCCCCCcccCcce
Q 014114 144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v 216 (430)
+...-...+ ++..++..+..|..+...+++..++..+..|.++...+..-. -+..+ . ..+.+
T Consensus 148 p~~gR~a~G-v~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~---------~~~~l 216 (276)
T 3no0_A 148 PPSTPGARG-VQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-G---------TKDTL 216 (276)
T ss_dssp CBCCTTCCC-EECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-C---------SSSCE
T ss_pred CCcCCCCCC-EEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-c---------CCCcE
Confidence 432111112 233455555667766655566788889999999888764321 11222 1 11334
Q ss_pred eEeEEeeCCCCCEEEEEeCCCcEEE--EECC
Q 014114 217 TSAAFLSIDDHRKFVAGTNDHQVRL--YDTS 245 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~dg~i~~--wd~~ 245 (430)
..+... .+...++..+.+|.+.. ++..
T Consensus 217 v~~~~~--~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 217 VDLIPI--KEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEE--SSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEe--CCCCEEEEEcCCCeEEEeeeCHH
Confidence 443332 23445666677888777 7764
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.73 E-value=61 Score=30.62 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=39.3
Q ss_pred CcEEEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCceeeEEeeccccceeEEEeeecCCcce
Q 014114 302 GSIRSIARHPTLPIIASCGL------------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 302 ~~v~~i~~s~~~~~l~s~~~------------d~~v~iwd~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 360 (430)
.....|.|+++|.+.+.... ...|..++..+++.... +.+.....++.++|+||++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~f--l~~P~~aEpnGiafSPD~kt 544 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRF--MVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEE--EECCTTCEEEEEEECTTSSE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEE--EeCCCCccccCCEECCCCCE
Confidence 45678999999987773321 12677777777775544 44443445799999999988
No 376
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=50.36 E-value=1.1e+02 Score=25.36 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=81.7
Q ss_pred eEEEEccCCeEEEeccCCCceeeeeeecCCCCCCCCCCceEEEEeeccCccccccCCceEEEEccCCeeEEEEeeeeccc
Q 014114 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~ 146 (430)
.+++.+.+|.|+--...... +..+ ....++.+..+....... .++..+..|.+.-..+..-+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-~~~~-------~lke~D~l~~~~~~~t~~--------~ll~~T~~Gr~~~~~~~elp~~ 67 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-APGL-------NYKAGDSFKAAVKGKSNQ--------PVVFVDSTGRSYAIDPITLPSA 67 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-STTS-------CCCTTCCEEEEEEEETTS--------CEEEEETTSEEEEECGGGSCCS
T ss_pred EEEEEeCCCEEEEeeCCcCC-ceec-------cCCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCCCc
Confidence 45667778888755432111 0000 012345666555444333 6777888888766665433222
Q ss_pred ccCCccee-eEEeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCC-------CceeeeecCCCCCCCCcccCcceeE
Q 014114 147 AESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 147 ~~~~~~~i-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
. ....++ ....+..+..|.++....++.+|+.++..|.++...+.. +.....+.. .+.+..
T Consensus 68 r-~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~----------~d~lv~ 136 (256)
T 1zvt_A 68 R-GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE----------NAHVMP 136 (256)
T ss_dssp S-SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT----------TCCBCC
T ss_pred C-CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC----------CCEEEE
Confidence 1 111111 123344456677764434566788899999999988743 122222221 123333
Q ss_pred eEEeeCCCCCEEEEEeCCCcEEEEECCC
Q 014114 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 219 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 246 (430)
+... ...+..++..+.+|.+..+....
T Consensus 137 ~~~~-~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 137 PVVI-EDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp CEEC-CCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEe-cCCCCEEEEEcCCCeEEEEEHHH
Confidence 3331 12455777888899888888753
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.72 E-value=28 Score=33.88 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CeEEEEeeCCCCEEEEEcCCCCEEEEEccCCeEEeEEec
Q 014114 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 260 ~i~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 298 (430)
.|.++.+ +..++++-+.|.++|+||+.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 467999999999999999999998877654
No 378
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=42.31 E-value=1.8e+02 Score=25.58 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=49.4
Q ss_pred CCEEEEEeCCCcEEEEECCC-CCcceEEe--eecCCCeEEEEeeC-CCCEEEEEcCCC----CEEEEEccCC---eEEeE
Q 014114 227 HRKFVAGTNDHQVRLYDTSA-QRRPVMSF--DFRETPIKAVAEEP-DSFNIYIGNGSG----DLASVDIRTG---KLLGC 295 (430)
Q Consensus 227 ~~~l~~~~~dg~i~~wd~~~-~~~~~~~~--~~~~~~i~~~~~s~-~~~~l~~~~~dg----~v~iwd~~~~---~~~~~ 295 (430)
...|.+++..| +.+++... +.. .... ......|.+|++.| +...|+++...| .|...+ ..+ +.+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~-W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRT-WELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCS-EEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCC-ceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCc
Confidence 34677777777 55555432 221 2222 12345799999998 333455554444 343332 222 22211
Q ss_pred ---Eecc-------ccCcEEEEEEcCC--CCEEEEEeCCCeEEEE
Q 014114 296 ---FIGK-------CSGSIRSIARHPT--LPIIASCGLDSYLRFW 328 (430)
Q Consensus 296 ---~~~~-------~~~~v~~i~~s~~--~~~l~s~~~d~~v~iw 328 (430)
+... ....|.+|++.|. ...|..+...+.|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 1110 0125888999872 4556666555655544
No 379
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=39.65 E-value=2e+02 Score=25.36 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=118.0
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeE---EeeccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
..++-..+|.+..|-.......-......... ........+..++++....+.+.-..+|.|+.|-....-.+-.-.
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 56666788888888754332211010111111 111112345556676666677777889999999654311100000
Q ss_pred CC---CCCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-----------ceEEeeecCCCeEEEEee
Q 014114 202 PP---PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 202 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----------~~~~~~~~~~~i~~~~~s 267 (430)
.. ............|..++. .....+.-..+|.|+.|-.....+ |..........|..++..
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAA----GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE----CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CccCcCCeEecccCCCeEEEEEe----CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 00 000000000124556655 344555667899999997543110 111111122356666654
Q ss_pred CCCCEEEEEcCCCCEEEEEccCC-----------eEEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-
Q 014114 268 PDSFNIYIGNGSGDLASVDIRTG-----------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL- 335 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~- 335 (430)
......++-..+|.|..|=.... .....+.......|..|+.- ..+.+.-..||.|+.|=....-.
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Confidence 32345555668888888854310 11112222112246666653 33455556889999996532111
Q ss_pred -------eeEE-eeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 336 -------LSAV-FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 -------~~~~-~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.... .+..-....|..++.. ... ++...+|.|..|-.+.
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 1111 1111112224444432 233 6667889999998875
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=37.25 E-value=2.2e+02 Score=25.10 Aligned_cols=244 Identities=11% Similarity=-0.029 Sum_probs=107.2
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEee---ccCCceEEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeec
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 201 (430)
.++.-..+|.+..|-.......-......+..-.. .....+..++. .....+.-..||.|+.|-....-.+-.-.
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 56666778888888755432211111111111110 01123444443 34455556778889999654311100000
Q ss_pred CCC---CCCCCcccCcceeEeEEeeCCCCCEEEEEeCCCcEEEEECCCCCc-------ce---EEeee-cCCCeEEEEee
Q 014114 202 PPP---KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-------PV---MSFDF-RETPIKAVAEE 267 (430)
Q Consensus 202 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------~~---~~~~~-~~~~i~~~~~s 267 (430)
... ...........+..++. .......+.-..||.|+.|-.....+ .. ..+.. ....|..|+..
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i--~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAV--NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEE--CTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred cCCccCCEEcccccCCceeEEEE--CcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 000 00000000112333444 33455666667899999996543110 01 11111 12256666553
Q ss_pred CCCCEEEEEcCCCCEEEEEccC-C---------e-EEeEEeccccCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 014114 268 PDSFNIYIGNGSGDLASVDIRT-G---------K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 268 ~~~~~l~~~~~dg~v~iwd~~~-~---------~-~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~d~~v~iwd~~~~~~~ 336 (430)
....++-..+|.|+.|=... + . ....+.......|..++......+.+.-..||.|+.|-....-.+
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 33555556788999985432 1 1 111122211345777776543356666778999999964321110
Q ss_pred --------eE-EeeccccceeEEEeeecCCcce-eeecCCCcEEEecCCC
Q 014114 337 --------SA-VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 --------~~-~~~~~~~~~~i~~~~~s~~g~~-~~~~~d~~v~vw~~~~ 376 (430)
.. ..+.......+..++.. ... ++...+|.|..|-.+.
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCG
T ss_pred CCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCC
Confidence 11 01111111123444332 233 5567788999998764
No 381
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=32.13 E-value=2.6e+02 Score=24.48 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=35.1
Q ss_pred CeEEEEeeCC--CCEEEEEcCCCCEEEEEcc--CCeEEeEEec---------------cccCcEEEEEEcCC-CCEEEEE
Q 014114 260 PIKAVAEEPD--SFNIYIGNGSGDLASVDIR--TGKLLGCFIG---------------KCSGSIRSIARHPT-LPIIASC 319 (430)
Q Consensus 260 ~i~~~~~s~~--~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~---------------~~~~~v~~i~~s~~-~~~l~s~ 319 (430)
.|.+|++.|. ...|+++...+.|...+-. +.+.+..+.. .....+.+|.++|. ...|+.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 4778888862 4566666655555444321 1222211100 01246889999984 3445555
Q ss_pred eCCCeEEEE
Q 014114 320 GLDSYLRFW 328 (430)
Q Consensus 320 ~~d~~v~iw 328 (430)
..++.|...
T Consensus 196 ~~~ggl~~s 204 (394)
T 3b7f_A 196 MSSGGVFES 204 (394)
T ss_dssp EETBEEEEE
T ss_pred ECCCCEEEE
Confidence 444444443
No 382
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.01 E-value=4e+02 Score=25.98 Aligned_cols=96 Identities=4% Similarity=-0.002 Sum_probs=56.1
Q ss_pred CCCcEEEEECCCCC------cceEE-eee-cCCCeEEEEeeCCCCEEEEEcCCCC--EEEEEccCCe-EEeE-EeccccC
Q 014114 235 NDHQVRLYDTSAQR------RPVMS-FDF-RETPIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGK-LLGC-FIGKCSG 302 (430)
Q Consensus 235 ~dg~i~~wd~~~~~------~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~~dg~--v~iwd~~~~~-~~~~-~~~~~~~ 302 (430)
..+.|...|+..+. ..... +.. ....+..+.+..+ .++++...++. |.++|+.+++ .... +.....+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46778889987631 11222 322 2346778888865 46666666664 6778877665 2333 2221134
Q ss_pred cEEEEEEcCCCC-EEEEEe---CCCeEEEEeCC
Q 014114 303 SIRSIARHPTLP-IIASCG---LDSYLRFWDIK 331 (430)
Q Consensus 303 ~v~~i~~s~~~~-~l~s~~---~d~~v~iwd~~ 331 (430)
.+..+.+++++. ++++.+ .-..+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 577677777764 444443 23578888876
No 383
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.99 E-value=2.2e+02 Score=26.62 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=42.5
Q ss_pred CeEEEEeeCCC--CEEEEEcCCCCEEEEEccCC----eEEeEEeccc-cCcEE-EEEEcCCCCEEEEEeCCCeEEE
Q 014114 260 PIKAVAEEPDS--FNIYIGNGSGDLASVDIRTG----KLLGCFIGKC-SGSIR-SIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 260 ~i~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~-~~~v~-~i~~s~~~~~l~s~~~d~~v~i 327 (430)
.+++|+....+ ..++.|..+|.|.-..+... ..+..+.-.. ..+|. .|.++++..+|+.++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 46666665433 46778889998765544322 1233333221 45775 8999999999998887664443
No 384
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=23.81 E-value=2e+02 Score=26.60 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=35.2
Q ss_pred eEEEEccCCeeEEEEeeeecccccCCcceeeEEeec-cCCceEEEEEcCCCCEEEEecCCCeEEE
Q 014114 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNV 188 (430)
Q Consensus 125 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~i 188 (430)
.++.|+.+|.+.-.-+.............+.-+.+. .+.+|..|.++++..+|++++.++.+++
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 566777777765443321111000001122222322 3578899999999999999988875554
No 385
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.46 E-value=1.9e+02 Score=20.07 Aligned_cols=8 Identities=0% Similarity=-0.060 Sum_probs=3.9
Q ss_pred eecCCcce
Q 014114 353 AFADKEVA 360 (430)
Q Consensus 353 ~~s~~g~~ 360 (430)
.+..+|.+
T Consensus 62 ~l~~dGNL 69 (113)
T 3mez_B 62 RLGHSGEL 69 (113)
T ss_dssp EECTTSCE
T ss_pred EEeCCCcE
Confidence 44445555
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=23.44 E-value=2.5e+02 Score=25.94 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=37.3
Q ss_pred CEEEEEeCCCcEEEEECCCC-------CcceEEeee--cCCCeEEEEeeCCCCEEEEEcCCCCEEE
Q 014114 228 RKFVAGTNDHQVRLYDTSAQ-------RRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 228 ~~l~~~~~dg~i~~wd~~~~-------~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~i 284 (430)
..+..|+.+|.|.-.-+... ...+..+.. ...+|..|.++++..+|++++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 35777889998764443221 112333332 3578999999999999999988876554
No 387
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.41 E-value=1.9e+02 Score=20.07 Aligned_cols=25 Identities=0% Similarity=-0.262 Sum_probs=13.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 014114 305 RSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 305 ~~i~~s~~~~~l~s~~~d~~v~iwd~~ 331 (430)
..+.+..+|.+++... ++.+ +|...
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 3456666776655432 3333 56543
No 388
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=23.26 E-value=25 Score=16.80 Aligned_cols=11 Identities=55% Similarity=1.301 Sum_probs=7.8
Q ss_pred ccCCCCCCCcc
Q 014114 6 TLECPGCPPLR 16 (430)
Q Consensus 6 ~~~~~~~p~~~ 16 (430)
++..|+||.++
T Consensus 11 tfrgpgcptlk 21 (29)
T 1ic9_A 11 TFRGPGCPTLK 21 (29)
T ss_dssp EEECSCCCCCC
T ss_pred eecCCCCCccc
Confidence 45678898754
Done!