Query 014115
Match_columns 430
No_of_seqs 65 out of 67
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p8i_A Putative dioxygenase; Y 14.2 59 0.002 28.1 1.2 18 381-398 69-86 (117)
2 2peb_A Putative dioxygenase; s 13.0 66 0.0023 28.0 1.2 18 381-398 66-83 (122)
3 3nkl_A UDP-D-quinovosamine 4-d 8.1 2.3E+02 0.0077 22.7 2.8 23 382-405 17-39 (141)
4 1qz7_B Axin; beta-catenin, pro 7.9 1.4E+02 0.0046 23.9 1.2 13 223-235 32-44 (70)
5 1xou_A ESPA; coiled coil, heli 6.9 99 0.0034 28.9 0.0 27 384-410 107-138 (192)
6 3tqu_A Non-canonical purine NT 6.8 1.7E+02 0.0057 27.1 1.5 12 24-35 14-25 (203)
7 2oqp_A Interleukin-21, IL-21, 6.8 1.7E+02 0.0058 25.9 1.4 25 69-93 92-116 (134)
8 3ech_C 25-MER fragment of prot 6.7 1.4E+02 0.0049 19.3 0.7 17 127-143 1-17 (25)
9 1m45_B IQ2, IQ2 motif from MYO 6.6 46 0.0016 21.7 -1.7 11 385-395 6-16 (26)
10 1v54_L VIIIA, cytochrome C oxi 6.5 4.5E+02 0.015 19.1 3.3 25 42-66 16-40 (47)
No 1
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=14.25 E-value=59 Score=28.08 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCCceEEE
Q 014115 381 RQALVTYLENNRAGITVF 398 (430)
Q Consensus 381 RQAlVtYLq~N~~GITvf 398 (430)
-.++|.||+.||||.+|+
T Consensus 69 f~~~v~WL~~nrg~LsVL 86 (117)
T 2p8i_A 69 FADLVGWLTLNHGALDIF 86 (117)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCCeEE
Confidence 458999999999999997
No 2
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=13.02 E-value=66 Score=27.97 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCCceEEE
Q 014115 381 RQALVTYLENNRAGITVF 398 (430)
Q Consensus 381 RQAlVtYLq~N~~GITvf 398 (430)
-.++|.||+.||||.+|+
T Consensus 66 f~~~v~WL~lnrg~LsVL 83 (122)
T 2peb_A 66 FDKVVPWLMLNREGLDIL 83 (122)
T ss_dssp HHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhCCCceEE
Confidence 458999999999999997
No 3
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=8.15 E-value=2.3e+02 Score=22.69 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCceEEEEeeeehh
Q 014115 382 QALVTYLENNRAGITVFGFMMDRT 405 (430)
Q Consensus 382 QAlVtYLq~N~~GITvfGf~lDR~ 405 (430)
+.+..++++|+ |..+-||+-|..
T Consensus 17 ~~l~~~l~~~~-g~~vvg~~d~~~ 39 (141)
T 3nkl_A 17 LQLANMLRQGK-EFHPIAFIDDDR 39 (141)
T ss_dssp HHHHHHHHHSS-SEEEEEEECSCG
T ss_pred HHHHHHHHhCC-CcEEEEEEECCc
Confidence 45788898887 899999987754
No 4
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=7.92 E-value=1.4e+02 Score=23.93 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.2
Q ss_pred hhcHHHHHHHHHH
Q 014115 223 EAEVVSILHEHLR 235 (430)
Q Consensus 223 ~sdv~~il~EH~R 235 (430)
|.|..+||.||+.
T Consensus 32 EedPesILDeHvs 44 (70)
T 1qz7_B 32 EENPESILDEHVQ 44 (70)
T ss_pred ccChHHHHHHHHH
Confidence 5699999999974
No 5
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=6.91 E-value=99 Score=28.85 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHhhcCCCceEEEEee-----eehhhHHHH
Q 014115 384 LVTYLENNRAGITVFGFM-----MDRTWLHAI 410 (430)
Q Consensus 384 lVtYLq~N~~GITvfGf~-----lDR~~L~TI 410 (430)
.+.|++.-|-||||-|-. ||.|=|-++
T Consensus 107 VI~Ymrd~~NgItVdG~s~IddyLdkG~LqaV 138 (192)
T 1xou_A 107 VISYINDPRNDITISGIDNINAQLGAGDLQTV 138 (192)
T ss_dssp --------------------------------
T ss_pred HHHHHHccCCCeeecCchhHHHHhccccHHHH
Confidence 489999999999999999 888776654
No 6
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=6.85 E-value=1.7e+02 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=6.6
Q ss_pred hHHHHhhHhhhh
Q 014115 24 GVELKSFTSCLK 35 (430)
Q Consensus 24 ~deLr~fr~~L~ 35 (430)
...++.++..|.
T Consensus 14 ~~K~~E~~~iL~ 25 (203)
T 3tqu_A 14 SSKLAEMQELLR 25 (203)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 344555666664
No 7
>2oqp_A Interleukin-21, IL-21, ZA11; four helix bundle, cytokine, multiple conformers; NMR {Homo sapiens} SCOP: a.26.1.2 PDB: 3tgx_B*
Probab=6.77 E-value=1.7e+02 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=18.4
Q ss_pred cccCCCCccCCCCcchhhhhhhhHH
Q 014115 69 LLCSTCDNQHQRPYDAIVQVSLSVF 93 (430)
Q Consensus 69 ~~c~~cd~~~~~~f~~~Vq~s~s~~ 93 (430)
..|++||.|..+|+..-++--+|.+
T Consensus 92 ~~CpsCeSYp~k~~~eFlerL~SLL 116 (134)
T 2oqp_A 92 LTCPSCDSYEKKPPKEFLERFKSLL 116 (134)
T ss_dssp CCCCCSTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCccccCcCCHHHHHHHHHHHH
Confidence 4699999999999766555555544
No 8
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=6.73 E-value=1.4e+02 Score=19.26 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014115 127 CQEYAAQLRRSMKLLCI 143 (430)
Q Consensus 127 r~gY~~~l~~sfrlLa~ 143 (430)
|++|+++|.++-|-=||
T Consensus 1 rr~~te~lrr~arrnaw 17 (25)
T 3ech_C 1 RRDYTEQLRRAARRNAW 17 (26)
T ss_dssp -CCHHHHHHHHHHHTHH
T ss_pred CCcHHHHHHHHHHHhHH
Confidence 56889998887775544
No 9
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=6.63 E-value=46 Score=21.67 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=8.7
Q ss_pred HHHhhcCCCce
Q 014115 385 VTYLENNRAGI 395 (430)
Q Consensus 385 VtYLq~N~~GI 395 (430)
+.|||||-.|.
T Consensus 6 ikylqnnikgf 16 (26)
T 1m45_B 6 IKYLQNNIKGF 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccceE
Confidence 68999997664
No 10
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=6.50 E-value=4.5e+02 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=19.7
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhh
Q 014115 42 SNIWRAGLSWSIFFLLVIGSPLVSH 66 (430)
Q Consensus 42 Ss~~~~~~Sw~~F~ll~v~vP~~~~ 66 (430)
.+....++-+.+|+..|+.+|.++.
T Consensus 16 ~nk~~~~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 16 ENKWRLLAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhHHHHH
Confidence 3566667778889999999998753
Done!