BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014118
(430 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 309/430 (71%), Positives = 339/430 (78%), Gaps = 49/430 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSP---------------- 265
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 266 ------------QFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEP 313
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VE GEGNVLGQL + +PQAVT+TPEERE+IERLEAMGFDRALVLEVFFACNKNEELAANY
Sbjct: 314 VE-GEGNVLGQLGT-VPQAVTITPEERESIERLEAMGFDRALVLEVFFACNKNEELAANY 371
Query: 421 LLDHMHEFED 430
LLDHMHEFE+
Sbjct: 372 LLDHMHEFEE 381
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 306/430 (71%), Positives = 335/430 (77%), Gaps = 49/430 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEI+VKPED V DVK NIE QG+DVYPASQQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K KVS SG ST S+AP +QAQ S+ PP++TQP+TT+Q PA T
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES P PVSS +D+YGQAASNLVAGSNLEATVQQIL
Sbjct: 121 LPQSAAES-----------------TPVVNPVSSETDIYGQAASNLVAGSNLEATVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDRETV RALRAA+NNPERAVEYLYSGIPEQ V P+ RA + GQA P A
Sbjct: 164 DMGGGSWDRETVARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAAIPSA--T 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
AQ+PAAP + G NANPLDLFPQGLP +GS AGTLDFLRNSQ
Sbjct: 222 AQEPAAPT-SGGANANPLDLFPQGLPTIGSTTSAGTLDFLRNSQ---------------- 264
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 265 ------------QFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEP 312
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VE G+GN+LGQLASA+PQ+V+VTPEEREAIERLEAMGFDRA+VLEVFFACNKNEELAANY
Sbjct: 313 VE-GDGNLLGQLASAVPQSVSVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANY 371
Query: 421 LLDHMHEFED 430
LLDHMH+FE+
Sbjct: 372 LLDHMHDFEE 381
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/436 (69%), Positives = 335/436 (76%), Gaps = 57/436 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEIEVKPED V+DVKKNIE+VQG+DVYPA+QQML++QGKVLKD TTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+SF VVML+KSKVSS G ST AAPA+QA SS P TQP+ TSQ P P A
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---SDVYGQAASNLVAGSNLEATVQ 177
PQS ES +PA V+S +++YGQAASNLVAGSNLEAT+Q
Sbjct: 121 LPQSAAES-------------------SPAVVTSALLDTNMYGQAASNLVAGSNLEATIQ 161
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG---GQAGN 234
+ILDMGGG W+RETV+RALRAA+NNPERA++YLYSGIPEQ VPPVA+ G G A N
Sbjct: 162 EILDMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVN 221
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
PPA A QP AP SGPNANPLDLFPQG + GSNAG G LDFLRNSQ
Sbjct: 222 PPA--LAPQPVV-APNSGPNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQ---------- 268
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
QFQALR MVQANPQILQPMLQELGKQNP+LMRLIQEHQ DFL
Sbjct: 269 ------------------QFQALRAMVQANPQILQPMLQELGKQNPYLMRLIQEHQADFL 310
Query: 355 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
RLINEPVE GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA+VLEV+FACNKNE
Sbjct: 311 RLINEPVE-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAIVLEVYFACNKNE 369
Query: 415 ELAANYLLDHMHEFED 430
ELAANYLLDHMHEF++
Sbjct: 370 ELAANYLLDHMHEFDE 385
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 309/461 (67%), Positives = 341/461 (73%), Gaps = 75/461 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVK ED V+DVKKNIETVQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+VVML KSK +S+GAS+ SA S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVVMLNKSKPASTGASSASAG----TSQAKSTPPSTSQPSISPQTPASVAA 116
Query: 118 -----------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSS 154
TV P +PE P PA P+ PAP AP S
Sbjct: 117 PVAPAPTRAPPPAPTPAPVAATETVTTP--IPE-------PVPATIPSSTPAPDSAPAGS 167
Query: 155 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+RALRAA+NNPERAVEYLY+GI
Sbjct: 168 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGI 227
Query: 215 PEQTAVPPVARASAG-GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
PEQ VPPVARA A GQ NP AQT QQPAA AP SGPNANPLDLFPQGLPN+G N G
Sbjct: 228 PEQAEVPPVARAPASFGQPANPSAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGNPG 284
Query: 274 AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQ 333
AGTLDFLRNSQ QFQALR MVQANPQ+LQPMLQ
Sbjct: 285 AGTLDFLRNSQ----------------------------QFQALRAMVQANPQVLQPMLQ 316
Query: 334 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVTPEEREA 389
ELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ VTPEEREA
Sbjct: 317 ELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTPEEREA 376
Query: 390 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 377 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 417
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 307/438 (70%), Positives = 331/438 (75%), Gaps = 57/438 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE+VQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVSS+G S++SAA +N AQ S + Q T TP T A
Sbjct: 61 ENKVAENSFVVIMLSKNKVSSTGTSSISAALSNTAQPDGS----TDQARQTITTPQATAA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES AP PAP PA SSV+DVY QAASNLVAGSNLE TVQQIL
Sbjct: 117 LPQSASES-------------APTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--------PPVARASAGGQA 232
DMGGGSWDR+TV+RALRAAYNNPERAV+YLYSGIPEQT + P A A QA
Sbjct: 164 DMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQA 223
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
NP AQ +Q P+SGPNANPLDLFPQGL N GSNAGAG LDFLRNS
Sbjct: 224 INPAAQDASQ---LAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSP-------- 272
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
QFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ D
Sbjct: 273 --------------------QFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPD 312
Query: 353 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
FLRLINEPVE GEGNVLGQ A A+PQAVTVTPEEREAIERLEAMGFDRALVLEV+FACNK
Sbjct: 313 FLRLINEPVE-GEGNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNK 371
Query: 413 NEELAANYLLDHMHEFED 430
NEELAANYLLDH+HEF++
Sbjct: 372 NEELAANYLLDHLHEFDE 389
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/432 (66%), Positives = 326/432 (75%), Gaps = 33/432 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFASLLF 298
Q QPAA ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQ
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQ------------- 284
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
FQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLIN
Sbjct: 285 ---------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLIN 329
Query: 359 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EP EGGEGN+LGQ+AS MPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAA
Sbjct: 330 EPAEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAA 389
Query: 419 NYLLDHMHEFED 430
NYLLDHMHEFE+
Sbjct: 390 NYLLDHMHEFEE 401
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/463 (65%), Positives = 342/463 (73%), Gaps = 77/463 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR A GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
GAGTLDFLRNSQ QFQALR MVQANPQ+LQPM
Sbjct: 285 PGAGTLDFLRNSQ----------------------------QFQALRAMVQANPQVLQPM 316
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVTPEER 387
LQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ VT EER
Sbjct: 317 LQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEER 376
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 377 EAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/434 (71%), Positives = 335/434 (77%), Gaps = 38/434 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K+K SS ST S AP+ + SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAK----PSATPTSTSVSTAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 175
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PPV A Q NPPA
Sbjct: 176 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPAD 235
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFASL 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQ
Sbjct: 236 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQ----------- 283
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
FQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRL
Sbjct: 284 -----------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRL 326
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
INEPVEGGEGN+LGQLA MPQAVTVTPEER+AIERLEAMGFDRA VLEV+FACNKNEEL
Sbjct: 327 INEPVEGGEGNILGQLAGTMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEEL 386
Query: 417 AANYLLDHMHEFED 430
AANYLLDHMHEF++
Sbjct: 387 AANYLLDHMHEFDE 400
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/431 (70%), Positives = 331/431 (76%), Gaps = 40/431 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K+K SS ST S AP+ +A SA PTST + Q PA T A
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKA----SATPTSTSVSAAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P V A P +A APAP + + P SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPE-------SDIYGQAASNLVAGSNLEGTIQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PPV R A Q NPPA
Sbjct: 170 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAP 229
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFASLLFI 299
A P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQ
Sbjct: 230 QAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQ-------------- 275
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
FQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINE
Sbjct: 276 --------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINE 321
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PVEGGEGN+LGQLASAMPQAVTVTPEER+AIERLEAMGFDRA VLEV+FACNKNEELAAN
Sbjct: 322 PVEGGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAAN 381
Query: 420 YLLDHMHEFED 430
YLLDHMHEF++
Sbjct: 382 YLLDHMHEFDE 392
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/437 (68%), Positives = 331/437 (75%), Gaps = 60/437 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS-DVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MKVFVKTLKGT+FEIEVKPED V +VKKNIE VQG+DVYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ----TTSSAPPT--STQPTTTSQ 113
+E+KVAENSF+VVML+KSKVSS G ST +AAP N + T ++APPT S QPT+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTLVSAQPTS--- 117
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
S+P + P++ + A PA A + A D+YGQAASNLVAGSNLE
Sbjct: 118 ----------SLPSNVTQPSSTSQAAVPAAAFSDA--------DMYGQAASNLVAGSNLE 159
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
AT+QQILDMGGGSW+RETV+RALRAA+NNPERAVEYLYSGIPEQ VPPVA+ A G A
Sbjct: 160 ATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAV 219
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
N Q A P+ GPNANPLDLFPQGLP+ GSNAGAG LDFLRNSQ
Sbjct: 220 N---PPAQAQQPAAPPSGGPNANPLDLFPQGLPSTGSNAGAGNLDFLRNSQ--------- 267
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
QFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DF
Sbjct: 268 -------------------QFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDF 308
Query: 354 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
LRLINEPVE GEGNVLGQLASA+PQ VTVTPEEREAI+RL AMGFDRALVLEVFFACNKN
Sbjct: 309 LRLINEPVE-GEGNVLGQLASAVPQTVTVTPEEREAIDRLVAMGFDRALVLEVFFACNKN 367
Query: 414 EELAANYLLDHMHEFED 430
EELAANYLLDHMHEF++
Sbjct: 368 EELAANYLLDHMHEFDE 384
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/436 (66%), Positives = 327/436 (75%), Gaps = 35/436 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTS----SAPPTSTQPTTTSQTPA 116
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS S PP S P ++ PA
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVPASTPPASVVPQASAPAPA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P A ++P S P + + SD+YGQAASNLVAGSNLE T+
Sbjct: 121 PAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VA+ A Q NPP
Sbjct: 181 QQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNPP 240
Query: 237 AQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFA 294
A Q QPA P ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQ
Sbjct: 241 ADAPQTAQPA-PVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQ--------- 290
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
FQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFL
Sbjct: 291 -------------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFL 331
Query: 355 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
RLINEP EG EGN+LGQ+ASAMPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNE
Sbjct: 332 RLINEPAEGAEGNILGQMASAMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNE 391
Query: 415 ELAANYLLDHMHEFED 430
ELAANYLLDHMHEFE+
Sbjct: 392 ELAANYLLDHMHEFEE 407
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/463 (65%), Positives = 341/463 (73%), Gaps = 78/463 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GQ-GDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 226
Query: 213 GIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR A GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 227 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 283
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
GAGTLDFLRNSQ QFQALR MVQANPQ+LQPM
Sbjct: 284 PGAGTLDFLRNSQ----------------------------QFQALRAMVQANPQVLQPM 315
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVTPEER 387
LQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ VT EER
Sbjct: 316 LQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEER 375
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 376 EAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 418
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/430 (67%), Positives = 320/430 (74%), Gaps = 69/430 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSP---------------- 265
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 266 --------------------------------QELGKQNPHLMRLIQEHQADFLRLINEP 293
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VE GEGNVLGQL + +PQAVT+TPEERE+IERLEAMGFDRALVLEVFFACNKNEELAANY
Sbjct: 294 VE-GEGNVLGQLGT-VPQAVTITPEERESIERLEAMGFDRALVLEVFFACNKNEELAANY 351
Query: 421 LLDHMHEFED 430
LLDHMHEFE+
Sbjct: 352 LLDHMHEFEE 361
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/434 (69%), Positives = 324/434 (74%), Gaps = 56/434 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKP----------------------SATPTSTSVSTAPQAPASTGA 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 99 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 157
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PV A Q NPPA
Sbjct: 158 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPAD 217
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFASL 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQ
Sbjct: 218 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQ----------- 265
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
FQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRL
Sbjct: 266 -----------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRL 308
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
INEPVEGGEGN+LGQLA AMPQAVTVTPEER+AIERLEAMGFDRA VLEV+FACNKNEEL
Sbjct: 309 INEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEEL 368
Query: 417 AANYLLDHMHEFED 430
AANYLLDHMHEF++
Sbjct: 369 AANYLLDHMHEFDE 382
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/430 (71%), Positives = 335/430 (77%), Gaps = 46/430 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLIHQ KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + AP +APAPAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATAASVAPAQSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A S GQA NPP Q
Sbjct: 170 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPVS--GQAVNPP--VQ 225
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A PA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS
Sbjct: 226 ASPPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSP---------------- 267
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQALR MVQANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEP
Sbjct: 268 ------------QFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEP 315
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VE GEGNV GQ A A+PQAVTVTPEEREAIERLEAMGFDRALVL+VFFACNKNEE+AANY
Sbjct: 316 VE-GEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGFDRALVLQVFFACNKNEEMAANY 374
Query: 421 LLDHMHEFED 430
LLDHMHEF++
Sbjct: 375 LLDHMHEFDE 384
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 283/431 (65%), Positives = 320/431 (74%), Gaps = 34/431 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q QPAA ++GPNANPLDLFPQ + AGAG+LDFLRNSQQ
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQ--VAISGAAGAGSLDFLRNSQQ-------------- 281
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
FQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINE
Sbjct: 282 --------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINE 327
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
P EGGEGN+LGQ+AS MPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAAN
Sbjct: 328 PAEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAAN 387
Query: 420 YLLDHMHEFED 430
YLLDHMHEFE+
Sbjct: 388 YLLDHMHEFEE 398
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 305/430 (70%), Positives = 334/430 (77%), Gaps = 48/430 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ PA APAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATA--ASVAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A AS GQA NPP Q
Sbjct: 168 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPAS--GQAVNPP--VQ 223
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A QPA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS
Sbjct: 224 ASQPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSP---------------- 265
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQALR MVQANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEP
Sbjct: 266 ------------QFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEP 313
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VE GEGNV GQ A A+PQAVTVTPEEREAIERLEAMGFDRALVL+VFFAC KNEE+AANY
Sbjct: 314 VE-GEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGFDRALVLQVFFACXKNEEMAANY 372
Query: 421 LLDHMHEFED 430
LLDHMHEF++
Sbjct: 373 LLDHMHEFDE 382
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/432 (65%), Positives = 313/432 (72%), Gaps = 54/432 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+K+ STV A S PP S P + +
Sbjct: 61 ENKVAENTFIVIMLSKT-------STVPA----------STPPVSVAPQAPAPAATGALP 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 104 ------ASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 158 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFASLLF 298
Q QPAA ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQ
Sbjct: 218 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQ------------- 263
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
FQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLIN
Sbjct: 264 ---------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLIN 308
Query: 359 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EP EGGEGN+LGQ+AS MPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAA
Sbjct: 309 EPAEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAA 368
Query: 419 NYLLDHMHEFED 430
NYLLDHMHEFE+
Sbjct: 369 NYLLDHMHEFEE 380
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/434 (68%), Positives = 329/434 (75%), Gaps = 55/434 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQG+DVYP++QQMLIHQGKVL+D TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAE SF+V+ML+KS +S + +A+ P QA AP STQP+T+ QTPAP
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQA---PPAPLASTQPSTSPQTPAPV 117
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P + + APAP + +D+YGQAASNLVAGSNLEAT+QQ
Sbjct: 118 AMPQAAPETAP------------------APAPAVTQTDIYGQAASNLVAGSNLEATIQQ 159
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA-SAGGQAGNPPA 237
ILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVA+A ++GGQ N
Sbjct: 160 ILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTN--P 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
QA Q A APTSGPNANPLDLFPQGLPN+GSN GAGTLDFLRNSQ
Sbjct: 218 PAQAGQQPAAAPTSGPNANPLDLFPQGLPNVGSNTGAGTLDFLRNSQ------------- 264
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQALR MVQANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLI
Sbjct: 265 ---------------QFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLI 309
Query: 358 NEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEPVEGGE GN+ QL AMPQA+ VTPEEREAIERLEAMGF+R LVLEVFFACNKNEEL
Sbjct: 310 NEPVEGGEGGNISSQLGGAMPQAIQVTPEEREAIERLEAMGFERGLVLEVFFACNKNEEL 369
Query: 417 AANYLLDHMHEFED 430
AANYLLDHMHEF++
Sbjct: 370 AANYLLDHMHEFDE 383
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 305/452 (67%), Positives = 333/452 (73%), Gaps = 65/452 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT F++EVKPED ++DVKK+IET QG+DVYPA QQMLI+QGKVLKD TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+MLTK+K S+ ST S A +T+ AP T PA T+A
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTA------STTKAPQTII--------PA-TIA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----------------SDVYGQAA 163
PP VP SA P APAP PA APAPA APAP + DVYGQAA
Sbjct: 106 PPAPVPTSALPAPAPAPTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAA 165
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAG+NLE +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPV
Sbjct: 166 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPV 225
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----TLD 278
A S GQA N PAQ Q A P+ GPNANPLDLFPQGLPNMGS TLD
Sbjct: 226 APVSLSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLD 285
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
FLRNSQQ FQALR MVQANPQILQPMLQELGKQ
Sbjct: 286 FLRNSQQ----------------------------FQALRAMVQANPQILQPMLQELGKQ 317
Query: 339 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGF 398
NP+L+RLIQEHQTDFLRLINEPVEGGEGN++GQLA+AMPQAVTVTPEEREAIERLEAMGF
Sbjct: 318 NPNLVRLIQEHQTDFLRLINEPVEGGEGNIMGQLAAAMPQAVTVTPEEREAIERLEAMGF 377
Query: 399 DRALVLEVFFACNKNEELAANYLLDHMHEFED 430
DR LVLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 378 DRGLVLEVFFACNKNEELAANYLLDHMHEFED 409
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/431 (66%), Positives = 316/431 (73%), Gaps = 55/431 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQ--------------- 260
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINE
Sbjct: 261 -------------QFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINE 307
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PVE GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAAN
Sbjct: 308 PVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAAN 366
Query: 420 YLLDHMHEFED 430
YLLDHMHEFED
Sbjct: 367 YLLDHMHEFED 377
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 293/433 (67%), Positives = 314/433 (72%), Gaps = 58/433 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+ F+IEVKP D V+DVKKNIET QG+ VYPA QQMLI+QGKVLKD TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+K SS ST SAAP P T PT
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPT---------PKVITLPT----------- 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SVP S P APAPAPAP + + S VYGQAASNLVAG+NLE VQQIL
Sbjct: 101 ---SVP-SPAPAPAPAPAPAPRSGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ PPVA+ QA PA
Sbjct: 157 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQA---PAAQP 213
Query: 241 AQQPAAP--APTSGPNANPLDLFPQGLPNMGSNAG-AGTLDFLRNSQQVSMMFYLFASLL 297
QQPA P P GPNANPLDLFPQGLPN+GS A AGTLDFLRNSQQ
Sbjct: 214 RQQPAQPTTVPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQ------------ 261
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
FQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLI
Sbjct: 262 ----------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLI 305
Query: 358 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
NEPVEGGEGNV G LA+AMPQ+VTVTPEEREAIERL AMGFD ALVLEV+FACNKNEELA
Sbjct: 306 NEPVEGGEGNVSGPLAAAMPQSVTVTPEEREAIERLGAMGFDPALVLEVYFACNKNEELA 365
Query: 418 ANYLLDHMHEFED 430
ANYLLDH+HEFED
Sbjct: 366 ANYLLDHIHEFED 378
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/431 (65%), Positives = 315/431 (73%), Gaps = 55/431 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNS
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSH--------------- 260
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINE
Sbjct: 261 -------------QFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINE 307
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PVE GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAAN
Sbjct: 308 PVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAAN 366
Query: 420 YLLDHMHEFED 430
YLLDHMHEFED
Sbjct: 367 YLLDHMHEFED 377
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 286/430 (66%), Positives = 318/430 (73%), Gaps = 54/430 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL GT+FEIEVKP D VSDVKK IETV+G++ YPA +QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+KVSSSGAST S+ P++TQ A TVA
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGAST-----------ASAPAPSATQ--------AQTVA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ SAP + P P A A APA A +DVYGQAASNLVAG+ LE+TVQQIL
Sbjct: 101 TPQV---SAPTVSVPEPTSGTATAAAPAAAAAVQ-TDVYGQAASNLVAGTTLESTVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A + G+ Q Q
Sbjct: 157 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQPA-NPQAQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
QQ A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ
Sbjct: 216 PQQAAPVAATGGPNANPLNLFPQGMPAADAAAGAGNLDFLRNSQ---------------- 259
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+FQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEP
Sbjct: 260 ------------KFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 307
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VE GE NV+ QL +AMPQAVTVTPEEREAIERLEAMGFDRA+VLEVFFACNKNEELAANY
Sbjct: 308 VE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEAMGFDRAMVLEVFFACNKNEELAANY 366
Query: 421 LLDHMHEFED 430
LLDHMHEFED
Sbjct: 367 LLDHMHEFED 376
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/430 (62%), Positives = 304/430 (70%), Gaps = 49/430 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK++VKTLKG+ FEI+V P+D V+DVK++IET QG+ VYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAENSF+V+ML+KSK S ST S A A +A T SAPP+ PAP V
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQT-SAPPS---------VPAPAV- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P ++ P A V S ++VY AAS LVAGSNLE +QQIL
Sbjct: 110 ---SQPPASTLPVPAPSPAPAPATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQIL 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TVIR +RAA+NNPERAVEYLYSGIPEQ PPVA + GQA NP Q
Sbjct: 167 DMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQPP 226
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQVSMMFYLFASLLFI 299
A APA PNANPLDLFPQGLP+MGSN AGAG LDFLR +Q
Sbjct: 227 AAAQPAPASAG-PNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQ--------------- 270
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQ+NPQILQPMLQELGKQNPHLMRLIQEHQ DFL+LINE
Sbjct: 271 -------------QFQALRAMVQSNPQILQPMLQELGKQNPHLMRLIQEHQADFLQLINE 317
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
P+EGGE N+LG PQA++VTPEER+AIERLEAMGFDR LVLEVFFACNKNEELAAN
Sbjct: 318 PMEGGE-NLLGH----GPQAISVTPEERDAIERLEAMGFDRELVLEVFFACNKNEELAAN 372
Query: 420 YLLDHMHEFE 429
YLLDHMHEFE
Sbjct: 373 YLLDHMHEFE 382
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/431 (61%), Positives = 304/431 (70%), Gaps = 56/431 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF+I+V +D V+DVKK IE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAE+SFVV+ML+K+KVSSSGAST +AA ++ P S+ P T+S PT A
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAA---PPNPVTAPQPASSVPPTSSTPEPPTSA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q S P P A VS VYGQAASNL+AGSN++ TVQQIL
Sbjct: 118 VGQGASNSEQSPVITPPTAA--------------VSSVYGQAASNLIAGSNVDPTVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ VP VAR+ + GQA NP
Sbjct: 164 EMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSV--- 220
Query: 241 AQQPAAPA-PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+P PA PT GPN NPL+LFPQG+PNMG+ AG LDFLRN+Q
Sbjct: 221 --RPPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQ--------------- 263
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQANPQILQPMLQELGKQNPHLM+LIQEHQ+DFL LINE
Sbjct: 264 -------------QFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINE 310
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
P EG E LA+ M QA+TVTPEE EAI+RLE MGFDR LVLEVF ACN+NE+LAAN
Sbjct: 311 P-EGEE----NPLAAGMTQAITVTPEEDEAIQRLEDMGFDRDLVLEVFIACNRNEDLAAN 365
Query: 420 YLLDHMHEFED 430
YLLDH +EF+D
Sbjct: 366 YLLDHQNEFDD 376
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 257/434 (59%), Positives = 303/434 (69%), Gaps = 50/434 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQVSMMFYLFASLL 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNA------------- 269
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FL LI
Sbjct: 270 ---------------QFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLI 314
Query: 358 NEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP EG E N+L Q AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+L
Sbjct: 315 NEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQL 374
Query: 417 AANYLLDHMHEFED 430
AANYLLDHM+EF+D
Sbjct: 375 AANYLLDHMNEFDD 388
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/434 (58%), Positives = 301/434 (69%), Gaps = 50/434 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQVSMMFYLFASLL 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNA------------- 269
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FL LI
Sbjct: 270 ---------------QFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLI 314
Query: 358 NEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP EG E N+L Q AMPQ + VTPEE EAI RLE MGFDRALVL+VFFACNK+E+L
Sbjct: 315 NEPAEGDDEENLLDQFPEAMPQTIAVTPEEDEAILRLEPMGFDRALVLDVFFACNKDEQL 374
Query: 417 AANYLLDHMHEFED 430
AANYLLDHM+EF D
Sbjct: 375 AANYLLDHMNEFAD 388
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/437 (55%), Positives = 296/437 (67%), Gaps = 54/437 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI+ +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+N++ EN F+VVMLTK+K SS+ ++ +++ + T +S P +A
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTP----------------LA 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + E+A P + PA APA + AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 105 PASNPVEAASPVVSQPPAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVAR-----ASAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR + A GQ
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
N ++ A P+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+
Sbjct: 225 NDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLGATAGGGALDFLRNNP--------- 275
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
QFQALRTMVQANPQILQPMLQEL KQNP LMRLIQ+HQ +F
Sbjct: 276 -------------------QFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEF 316
Query: 354 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
L LINE EG++LGQ A+ MPQ++ VTPEEREAIERLEAMGFDRALV+E F AC+KN
Sbjct: 317 LHLINEET---EGDLLGQFAAEMPQSINVTPEEREAIERLEAMGFDRALVIEAFLACDKN 373
Query: 414 EELAANYLLDHMHEFED 430
EELAANYLL+H ++ED
Sbjct: 374 EELAANYLLEHAADYED 390
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 259/440 (58%), Positives = 304/440 (69%), Gaps = 39/440 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-TTSSAPPTSTQPTT-TSQTPAPT 118
N VAENSF+V+ML+K+K S SG ST S AP QAQ T A T + P T ++TP T
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S E APP A P PA + PA A S +DVY QAASNLV+G +LE TVQ
Sbjct: 121 A--PVSASELAPPSAQP-PAGSDIPA---AAVTASGDADVYSQAASNLVSGGSLEQTVQH 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGNPPA 237
ILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA NP A
Sbjct: 175 ILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQA 234
Query: 238 QTQAQ-----QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
+QA QP+ A ++GPNANPL+LFPQG+P GSN
Sbjct: 235 LSQAAPVPPVQPSGVA-SAGPNANPLNLFPQGVPTGGSN--------------------- 272
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
R L QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +
Sbjct: 273 -PGAGVGAGAGALDALRALPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAE 331
Query: 353 FLRLINE-PVEGGEGNVLGQLASAMPQ-AVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
FLRL+NE P G GN+LGQLA+AMPQ AVTVTPEERE+I+RLEAMGF+R LVLEVFFAC
Sbjct: 332 FLRLVNETPESGAAGNILGQLAAAMPQAAVTVTPEERESIQRLEAMGFNRELVLEVFFAC 391
Query: 411 NKNEELAANYLLDHMHEFED 430
N++EELAANYLLDH HE+ED
Sbjct: 392 NRDEELAANYLLDHGHEYED 411
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 249/437 (56%), Positives = 293/437 (67%), Gaps = 54/437 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIE +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS-GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+N + EN F+VVMLTKSK SS+ GAS+ S A ++ QPT TS PAP
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTA-------------STVQPTQTSTPPAPAS 107
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P V ++P + A AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 108 NP---VEVASPVVSQLPAVAPAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A Q
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
N ++ A AP+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+
Sbjct: 225 NNVIAGESDSAEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNP--------- 275
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
QFQALRTMVQANPQILQPMLQEL KQNP LMRLIQ+HQ +F
Sbjct: 276 -------------------QFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEF 316
Query: 354 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
L LINE +G++LGQ A+ MPQ++ VTPEEREAIERLEAMGFDRALV+E F AC+KN
Sbjct: 317 LHLINEET---DGDLLGQFAAEMPQSINVTPEEREAIERLEAMGFDRALVIEAFLACDKN 373
Query: 414 EELAANYLLDHMHEFED 430
EELAANYLL+H ++ED
Sbjct: 374 EELAANYLLEHAADYED 390
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/434 (57%), Positives = 297/434 (68%), Gaps = 47/434 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG VLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
E+KV EN+F+V+ML ++K SSS A S P+NQ APPT T P SQ P
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 115 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++
Sbjct: 172 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPA------DPV 225
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQVSMMFYLFASLL 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+
Sbjct: 226 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNA------------- 272
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QF++L ++VQANPQILQP+LQELGKQNP +++LIQ++Q +FLRLI
Sbjct: 273 ---------------QFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRLI 317
Query: 358 NEPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP EG E N+L Q A +PQ + VTPEE EAI RLE MGFDRALVLEV+FACNK+E L
Sbjct: 318 NEPAEGDEDENLLDQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVYFACNKDETL 377
Query: 417 AANYLLDHMHEFED 430
AANYLLDHM+EF+D
Sbjct: 378 AANYLLDHMNEFDD 391
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/280 (78%), Positives = 232/280 (82%), Gaps = 32/280 (11%)
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
V S +D YGQAASNLVAG+N E +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLY
Sbjct: 149 VVSETDAYGQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLY 208
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
SGIPEQ VPPVARA A GQA NPPAQ+Q QP PAP+SGPNANPLDLFPQG+PN+GSN
Sbjct: 209 SGIPEQAEVPPVARAPASGQAANPPAQSQ--QPV-PAPSSGPNANPLDLFPQGIPNVGSN 265
Query: 272 -AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQP 330
AGAGTLDFLRNSQQ FQALR MVQANPQILQP
Sbjct: 266 PAGAGTLDFLRNSQQ----------------------------FQALRAMVQANPQILQP 297
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 390
MLQELGKQNP LMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA+AMPQAVTVTPEEREAI
Sbjct: 298 MLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAI 357
Query: 391 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 358 ARLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/442 (57%), Positives = 302/442 (68%), Gaps = 52/442 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQVSMM 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQ------- 281
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
L QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+
Sbjct: 282 ---------------------LPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQEN 320
Query: 350 QTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREAI+RLE MGF+R LVLEVFF
Sbjct: 321 QAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREAIQRLEGMGFNRELVLEVFF 380
Query: 409 ACNKNEELAANYLLDHMHEFED 430
ACNK+EEL ANYLLDH HEF++
Sbjct: 381 ACNKDEELTANYLLDHGHEFDE 402
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/453 (57%), Positives = 301/453 (66%), Gaps = 65/453 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNP-----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
RA A Q GNP SGPNANPL+LFPQG+P+ GSN GA
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
R L QFQAL +VQANPQILQPMLQELGKQN
Sbjct: 279 AGAGA--------------------LDALRQLPQFQALLALVQANPQILQPMLQELGKQN 318
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMG 397
P ++RLIQE+Q +FLRL+NE + G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMG
Sbjct: 319 PQILRLIQENQAEFLRLVNESPDSGTAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMG 378
Query: 398 FDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
F+R LVLEVFFACNK+EELAANYLLDH HEFED
Sbjct: 379 FNRELVLEVFFACNKDEELAANYLLDHGHEFED 411
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/435 (57%), Positives = 274/435 (62%), Gaps = 103/435 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDS-------------------------------------- 22
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
VV + K+ S GA PA + + T T TP P
Sbjct: 23 ----------VVDVKKNIESVQGADVY---PAAKQMLIHQGKVLKDETTETVTTPIPE-- 67
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + PAP APV S DVYGQAASNL AGSNLE+T+QQIL
Sbjct: 68 --------------PVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQIL 113
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA-GGQAGNPPAQT 239
DMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR A GQ NPPAQT
Sbjct: 114 DMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQT 173
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
QQPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQ
Sbjct: 174 --QQPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQ--------------- 215
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINE
Sbjct: 216 -------------QFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINE 262
Query: 360 PVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
PVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEE
Sbjct: 263 PVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEE 322
Query: 416 LAANYLLDHMHEFED 430
LAANYLLDHMHEFE+
Sbjct: 323 LAANYLLDHMHEFEE 337
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/453 (57%), Positives = 301/453 (66%), Gaps = 65/453 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNP-----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
RA A Q GNP SGPNANPL+LFPQG+P+ GSN GA
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
R L QFQAL +VQANPQILQPMLQELGKQN
Sbjct: 279 AGAGA--------------------LDALRQLPQFQALLALVQANPQILQPMLQELGKQN 318
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMG 397
P ++RLIQE+Q +FLRL+NE + G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMG
Sbjct: 319 PQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMG 378
Query: 398 FDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
F+R LVLEVFFACNK+EELAANYLLDH HEFED
Sbjct: 379 FNRELVLEVFFACNKDEELAANYLLDHGHEFED 411
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/452 (55%), Positives = 288/452 (63%), Gaps = 71/452 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG HF+IEV+P D V +VKK IE VQG+ YP+ QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+VVML+K+K +++G S+ AP S P Q A
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSSTQQAP-------PSVSPAPAQNPVAPVPAAAAAQ 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +A P A A DVYGQAASNLVAG+NLE +QQIL
Sbjct: 114 LSSLAPATATPTAGAGTTQTDA--------------DVYGQAASNLVAGNNLEHVIQQIL 159
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-PPVAR-----ASAGGQAGN 234
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE V PPVAR A
Sbjct: 160 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAP 219
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN----------------MGSNAGAGTLD 278
PA A A+ +GPNA PLDLFPQGLPN G+ AGAG LD
Sbjct: 220 APAAAAAAAAASATAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALD 279
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
FLRN+ QFQALRTMVQANPQILQPMLQEL KQ
Sbjct: 280 FLRNNP----------------------------QFQALRTMVQANPQILQPMLQELSKQ 311
Query: 339 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGF 398
NP LMRLIQ+HQ DFLRL+NEPVEG EG+ QLA AMPQA+ VTPEEREAIERLEAMGF
Sbjct: 312 NPQLMRLIQDHQADFLRLVNEPVEGAEGDFFNQLAGAMPQAINVTPEEREAIERLEAMGF 371
Query: 399 DRALVLEVFFACNKNEELAANYLLDHMHEFED 430
DRALV+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 372 DRALVIEAFLACDKNEQLAANYLLEHAGDYED 403
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/442 (57%), Positives = 298/442 (67%), Gaps = 52/442 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP A A A + +DVY QAASNLV+G++LE T+QQIL
Sbjct: 121 ------------AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQVSMM 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQ------- 281
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
L QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+
Sbjct: 282 ---------------------LPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQEN 320
Query: 350 QTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREAI+RLE MGF+R LVLEVFF
Sbjct: 321 QAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREAIQRLEGMGFNRELVLEVFF 380
Query: 409 ACNKNEELAANYLLDHMHEFED 430
ACNK+EEL ANYLLDH HEF++
Sbjct: 381 ACNKDEELTANYLLDHGHEFDE 402
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/431 (59%), Positives = 285/431 (66%), Gaps = 90/431 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQ--------------- 260
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQANPQILQPMLQE
Sbjct: 261 -------------QFQALRAMVQANPQILQPMLQE------------------------- 282
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAAN
Sbjct: 283 -----------QLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAAN 331
Query: 420 YLLDHMHEFED 430
YLLDHMHEFED
Sbjct: 332 YLLDHMHEFED 342
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/279 (77%), Positives = 230/279 (82%), Gaps = 32/279 (11%)
Query: 154 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
S +DVYGQAASNLVAGSNLEA +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 187 SETDVYGQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSG 246
Query: 214 IPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
IPEQ VPPV R A GGQ NPPAQ+Q QQPA APTSGPNANPLDLFPQGLPN+GSN
Sbjct: 247 IPEQAEVPPVTRPPASGGQPTNPPAQSQ-QQPAV-APTSGPNANPLDLFPQGLPNVGSNT 304
Query: 273 GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
GAGTLDFLRNSQ QFQALR MVQANPQILQPML
Sbjct: 305 GAGTLDFLRNSQ----------------------------QFQALRAMVQANPQILQPML 336
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIE 391
QELGKQNPHLMRLIQEHQ DFLRLINEPVEGGE GN++ QLA +PQA+ VTPEEREAIE
Sbjct: 337 QELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGGNIINQLAGGVPQAIQVTPEEREAIE 396
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
RLEAMGFDRALVLEVFFACNKNEELAANYLLDH+HEF++
Sbjct: 397 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHIHEFDE 435
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/440 (56%), Positives = 295/440 (67%), Gaps = 51/440 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA---SAGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNS------ 281
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q
Sbjct: 282 ----------------------QFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQ 319
Query: 351 TDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
+FLRLINEP EG EGN+L Q A+ MPQ V VTPEE EAI+RLE MGFDR LVLEVFFAC
Sbjct: 320 AEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFAC 379
Query: 411 NKNEELAANYLLDHMHEFED 430
NK+E+LAANYLLDHM+EF+D
Sbjct: 380 NKDEQLAANYLLDHMNEFDD 399
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/411 (63%), Positives = 302/411 (73%), Gaps = 49/411 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-AAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKVAENSF+V+MLTK+K SS G S+ + AAP +A S+AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKA-PQSTAPAPAATPVSTTEVPLPTS 119
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAAS 164
APP SV S+PP +P P P PAPAPAP P P + +DVY QAAS
Sbjct: 120 APPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAAS 179
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
NLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP A
Sbjct: 180 NLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP-A 238
Query: 225 RASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRN 282
R + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLRN
Sbjct: 239 RVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRN 298
Query: 283 SQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHL 342
S QFQALR MV+ANPQILQPMLQELGKQNP L
Sbjct: 299 SP----------------------------QFQALRAMVRANPQILQPMLQELGKQNPQL 330
Query: 343 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
+RLIQ+HQ DFLRLINEP+E GEGN+LGQLA AMPQA+TVTPEEREAI+R+
Sbjct: 331 IRLIQDHQPDFLRLINEPLE-GEGNILGQLAEAMPQAITVTPEEREAIQRV 380
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/411 (63%), Positives = 302/411 (73%), Gaps = 49/411 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-AAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKVAENSF+V+MLTK+K SS G S+ + AAP +A S+AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKA-PQSTAPAPAATPVSTTEVPLPTS 119
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAAS 164
APP SV S+PP +P P P PAPAPAP P P + +DVY QAAS
Sbjct: 120 APPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAAS 179
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
NLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP A
Sbjct: 180 NLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP-A 238
Query: 225 RASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRN 282
R + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLRN
Sbjct: 239 RVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRN 298
Query: 283 SQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHL 342
S QFQALR MV+ANPQILQPMLQELGKQNP L
Sbjct: 299 SP----------------------------QFQALRAMVRANPQILQPMLQELGKQNPQL 330
Query: 343 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
+RLIQ+HQ DFLRLINEP+E GEGN+LGQLA AMPQA+TVTPEEREAI+R+
Sbjct: 331 IRLIQDHQPDFLRLINEPLE-GEGNILGQLAEAMPQAITVTPEEREAIQRV 380
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 244/430 (56%), Positives = 288/430 (66%), Gaps = 43/430 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEIEV P KV D+KK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K K S+S AS + P Q +AP QTP
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTPV---- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SAP P PA A A S+ +D YGQAAS+LVAGSNLE TVQ IL
Sbjct: 116 ----TPVSAP---VPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+ ALRAA+NNPERAVEYLY+G+PEQ A P A GQ G+P Q
Sbjct: 169 EMGGGAWDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGDPVQAPQ 228
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+QQ A +SGPNANPLDLFPQ LPN +NA G LD LRN+ Q
Sbjct: 229 SQQAVA---SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQ--------------- 270
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
F+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FLRLINEP
Sbjct: 271 -------------FRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEP 317
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
EG EGN+L Q + +PQ V VTP E EAI+RLE MGFDR LVLEVFFACNK+E+LAANY
Sbjct: 318 AEGAEGNLLEQFGAGVPQTVAVTPAENEAIQRLEHMGFDRDLVLEVFFACNKDEQLAANY 377
Query: 421 LLDHMHEFED 430
LLDHM+EF+D
Sbjct: 378 LLDHMNEFDD 387
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/440 (56%), Positives = 294/440 (66%), Gaps = 51/440 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA---SAGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNS------ 281
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q
Sbjct: 282 ----------------------QFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQ 319
Query: 351 TDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
+FLRLINEP EG EGN+L Q A+ MPQ V VTPEE EAI+RLE MGFDR LVLEVFFAC
Sbjct: 320 AEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFAC 379
Query: 411 NKNEELAANYLLDHMHEFED 430
NK+E LAANYLLDHM+EF+D
Sbjct: 380 NKDELLAANYLLDHMNEFDD 399
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/428 (54%), Positives = 282/428 (65%), Gaps = 57/428 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF ++V P+D V+ VKKNIET QG+DVYPA+QQMLIHQGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+FVV+ML+K+KVSS S+AP+N TQP ++ + T
Sbjct: 61 ENKVVENNFVVIMLSKNKVSSGA----SSAPSN----------LGTQPQSSLPPTSSTSQ 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP S + +P P P +V +Y AASNL+AGSNLE T+QQIL
Sbjct: 107 PPASAVGQGESNSEQSPVITP---------PTIAVPSIYDHAASNLMAGSNLETTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV AL AA+NNPERA+EYLYSGIPE+ VP R+ GQA N + Q
Sbjct: 158 EMGGGNWDRDTVTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAEN--SSIQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ QPA PT GPN NPL+LFPQGLPNM + G LD LRN +
Sbjct: 216 STQPA--VPTGGPNTNPLNLFPQGLPNMSAIDNRGDLDSLRNRE---------------- 257
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+FQALR ++ NPQILQPM+QELG+QNP LM++IQ+HQ D L L+NEP
Sbjct: 258 ------------EFQALRETMRENPQILQPMIQELGQQNPQLMQIIQDHQEDILDLMNEP 305
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
EG E N+ QL S + VT+TPEE EAI+RLEAMGF R +V+E FFACNKNE+LAANY
Sbjct: 306 -EGDE-NLQSQLDSMISGTVTITPEENEAIQRLEAMGFHRDIVVEAFFACNKNEDLAANY 363
Query: 421 LLDHMHEF 428
LLDH EF
Sbjct: 364 LLDHPDEF 371
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 249/432 (57%), Positives = 287/432 (66%), Gaps = 57/432 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNS---------------- 258
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ L +VQANPQILQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP
Sbjct: 259 ------------QFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEP 306
Query: 361 VEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
+EG E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+LAA
Sbjct: 307 LEGDEENEMMLDQMADAT-ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLAA 365
Query: 419 NYLLDHMHEFED 430
NYLLDHMHEF++
Sbjct: 366 NYLLDHMHEFDN 377
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 259/442 (58%), Positives = 308/442 (69%), Gaps = 55/442 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAA-------ASDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVARA A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQVSMM 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQ------- 278
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
L QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+
Sbjct: 279 ---------------------LPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQEN 317
Query: 350 QTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
Q +F+RL+NE EGG GN+LGQLA+AMPQ+VTVTPEEREAI+RLE MGF+ LVLEVFF
Sbjct: 318 QAEFVRLVNETPEGGPGGNILGQLAAAMPQSVTVTPEEREAIQRLEGMGFNHELVLEVFF 377
Query: 409 ACNKNEELAANYLLDHMHEFED 430
ACNK+EELAANYLLDH HEF++
Sbjct: 378 ACNKDEELAANYLLDHGHEFDE 399
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 259/442 (58%), Positives = 308/442 (69%), Gaps = 55/442 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAA-------ASDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVA A A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQVSMM 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQ------- 278
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
L QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+
Sbjct: 279 ---------------------LPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQEN 317
Query: 350 QTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
Q +F+RL+NE EGG GN+LGQLA+AMPQ+VTVTPEEREAI+RLE MGF+R LVLEVFF
Sbjct: 318 QAEFVRLVNETPEGGPGGNILGQLAAAMPQSVTVTPEEREAIQRLEGMGFNRELVLEVFF 377
Query: 409 ACNKNEELAANYLLDHMHEFED 430
ACNK+EELAANYLLDH HEF++
Sbjct: 378 ACNKDEELAANYLLDHGHEFDE 399
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 251/432 (58%), Positives = 287/432 (66%), Gaps = 53/432 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGKVL D TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + APPT T P QT A A
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSS------AAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 113 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 165 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+
Sbjct: 222 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNN----------------- 261
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ L +VQANPQILQP+LQELGKQNP +M+LIQE+Q +F+R+INEP
Sbjct: 262 -----------VQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEP 310
Query: 361 VEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
+EG E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+L A
Sbjct: 311 LEGDEENEMMLDQMADA-AETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLTA 369
Query: 419 NYLLDHMHEFED 430
NYLLDHMHEF++
Sbjct: 370 NYLLDHMHEFDN 381
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 246/432 (56%), Positives = 287/432 (66%), Gaps = 61/432 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPA--KVTANQAPSTQTVPAT---------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PPQ+ AP A A A A VS+ +D YGQA SNLVAGSNLE T++ IL
Sbjct: 103 PPQTSAAPDA--PAPIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSIL 160
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 161 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 214
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+
Sbjct: 215 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNS---------------- 254
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ L +VQANPQILQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP
Sbjct: 255 ------------QFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEP 302
Query: 361 VEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
+EG E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+LAA
Sbjct: 303 LEGDEENEMMLDQMADAT-ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLAA 361
Query: 419 NYLLDHMHEFED 430
NYLLDHMHEF++
Sbjct: 362 NYLLDHMHEFDN 373
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 220/274 (80%), Gaps = 34/274 (12%)
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
VYGQAAS+LVAGSNLE VQQILDMGGG+WDR+TV+RALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPA--APAPTSGPNANPLDLFPQGLPNMGSNAG-A 274
PPVA GGQA P AQ Q Q P A P+ GPNANPLDLFPQGLPN+GS AG A
Sbjct: 151 AEAPPVAHMPLGGQA--PAAQPQ-QHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGA 207
Query: 275 GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQE 334
GTLDFLRNSQQ FQALR MVQANPQILQPMLQE
Sbjct: 208 GTLDFLRNSQQ----------------------------FQALRAMVQANPQILQPMLQE 239
Query: 335 LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLE 394
LGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQLA+AMPQAVTVTPEEREAIERLE
Sbjct: 240 LGKQNPHLMRLIQEHQDDFLRLINEPVESGEGNVLGQLAAAMPQAVTVTPEEREAIERLE 299
Query: 395 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
AMGFDRALVLEVFFACNKNEELAANYLLDHMHEF
Sbjct: 300 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 333
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTLKG+ F+IEVKPED V+DVKK IET QG VYPA QQMLIHQ KVLKD TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
ENK+ ENSFVV+ML+K + +S
Sbjct: 61 ENKIVENSFVVIMLSKVRFAS 81
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/431 (52%), Positives = 276/431 (64%), Gaps = 69/431 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
GPN++PL++FPQ + + AG G+LDFLRN+
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNP--------------- 245
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR+MVQ+NPQILQP+LQELGKQNP L+RLIQEH +FL+LINE
Sbjct: 246 -------------QFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINE 292
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PV+G EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAAN
Sbjct: 293 PVDGSEGDIFEQPEQDMPHAINVTPTEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAAN 352
Query: 420 YLLDHMHEFED 430
YLL++ +FED
Sbjct: 353 YLLENAGDFED 363
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/431 (52%), Positives = 278/431 (64%), Gaps = 69/431 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
GPN++PL++FPQ + + AG G+LDFLRN+
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNP--------------- 245
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR+MVQ+NPQILQP+LQELGKQNP L+RLIQEH +FL+LINE
Sbjct: 246 -------------QFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINE 292
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAAN
Sbjct: 293 PVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAAN 352
Query: 420 YLLDHMHEFED 430
YLL++ +FED
Sbjct: 353 YLLENAGDFED 363
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/431 (52%), Positives = 276/431 (64%), Gaps = 69/431 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
GPN++PL++FPQ + + AG G+LDFLRN+
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNP--------------- 245
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR+MVQ+NPQILQP+LQELGKQNP L+RLIQEH +FL+LINE
Sbjct: 246 -------------QFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINE 292
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PV+G EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAAN
Sbjct: 293 PVDGSEGDIFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAAN 352
Query: 420 YLLDHMHEFED 430
YLL++ +FED
Sbjct: 353 YLLENAGDFED 363
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 237/435 (54%), Positives = 286/435 (65%), Gaps = 69/435 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPA-------QEQPA---AQTDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 251
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 252 ---------------QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLV 296
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 297 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 356
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 357 LAANYLLENSGDFED 371
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/447 (53%), Positives = 283/447 (63%), Gaps = 63/447 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S A Q+ T + P QP +S TPA V
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVS---------AGQSSTQPAQNPPVAQPVLSS-TPAAQVT 110
Query: 121 P---PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS---------DVYGQAASNLVA 168
P P + +P PA AP AP AP+ AP +S S D YGQAASNLVA
Sbjct: 111 PSPTPAAQVTPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVA 170
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARAS 227
G+NLE TVQQ++DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R
Sbjct: 171 GNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFG 230
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNS 283
+G Q + PAP SG PN PL++FPQ + G G+L+FLRN+
Sbjct: 231 SG--------QATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNN 282
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
Q FQALRTMV NPQILQPMLQELGKQNP L+
Sbjct: 283 PQ----------------------------FQALRTMVHTNPQILQPMLQELGKQNPQLL 314
Query: 344 RLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 403
RLIQ+H +FL+LINEPV+ EG + Q MP A+ VTP E+ AIERLEAMGFDRALV
Sbjct: 315 RLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALV 374
Query: 404 LEVFFACNKNEELAANYLLDHMHEFED 430
+E F AC++NEELAANYLL++ +F+D
Sbjct: 375 IEAFLACDRNEELAANYLLENSGDFDD 401
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/445 (56%), Positives = 303/445 (68%), Gaps = 48/445 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQV 286
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G+NAGAG
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGV---------- 279
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
R L QFQAL +VQANPQILQPMLQELGKQNP ++RLI
Sbjct: 280 ------------GAGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLI 327
Query: 347 QEHQTDFLRLINE-PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 405
QE+Q +FLRL+NE P G GN+LG LA+ MPQAV VTPEEREAI+RLE+MGF+R LVLE
Sbjct: 328 QENQAEFLRLVNETPESGAGGNILGALAAQMPQAVQVTPEEREAIQRLESMGFNRELVLE 387
Query: 406 VFFACNKNEELAANYLLDHMHEFED 430
VFFACN++EELAANYLLDH HEFE+
Sbjct: 388 VFFACNRDEELAANYLLDHGHEFEE 412
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 285/435 (65%), Gaps = 69/435 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPA-------QEQPA---AQTDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 251
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
Q + LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 252 ---------------QLEQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLV 296
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 297 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 356
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 357 LAANYLLENSGDFED 371
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/435 (52%), Positives = 279/435 (64%), Gaps = 75/435 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 245
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 246 ---------------QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLV 290
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 291 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 350
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 351 LAANYLLENSGDFED 365
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/449 (53%), Positives = 290/449 (64%), Gaps = 73/449 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPA---PAP----------APAPAPAPAPVS-SVSDVYGQAASNL 166
P S +S+P PA+P PA PA A P VS + +D YGQAAS L
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTL 166
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PV 223
V+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P
Sbjct: 167 VSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPE 226
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
A+ + G A P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 227 AQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 274
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
QFQ LRTMV +NPQILQPMLQELGKQNP L+
Sbjct: 275 D----------------------------QFQQLRTMVHSNPQILQPMLQELGKQNPQLL 306
Query: 344 RLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 401
RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRA
Sbjct: 307 RLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRA 366
Query: 402 LVLEVFFACNKNEELAANYLLDHMHEFED 430
LV+E F AC++NEELAANYLL++ +FED
Sbjct: 367 LVIEAFLACDRNEELAANYLLENSGDFED 395
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/435 (52%), Positives = 279/435 (64%), Gaps = 75/435 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTNPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 245
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 246 ---------------QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLV 290
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 291 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 350
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 351 LAANYLLENSGDFED 365
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/430 (52%), Positives = 270/430 (62%), Gaps = 82/430 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV+
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTVS 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P S PP A D YG AASNLVAGSNLE T+QQI+
Sbjct: 100 MSNSTPPSDPPVQTHVSA------------------DTYGLAASNLVAGSNLEQTIQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 142 DMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV--- 198
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
GPN++PL++FPQ + + AG G+LDFLRN+
Sbjct: 199 -----------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNP---------------- 230
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQALR+MVQ+NPQILQP+LQELGKQNP L+RLIQEH +FL+LINEP
Sbjct: 231 ------------QFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEP 278
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
VEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANY
Sbjct: 279 VEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANY 338
Query: 421 LLDHMHEFED 430
LL++ +FED
Sbjct: 339 LLENAGDFED 348
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/435 (52%), Positives = 278/435 (63%), Gaps = 75/435 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 245
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
Q + LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 246 ---------------QLEQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLV 290
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 291 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 350
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 351 LAANYLLENSGDFED 365
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/439 (51%), Positives = 277/439 (63%), Gaps = 82/439 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV+E+ F+VVML+KSKV + +A + QT S+ P T P +TS V
Sbjct: 61 DNKVSEDGFLVVMLSKSKV-------LGSAGTSSTQTASNPPITVPTPDSTS------VV 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS +A P AP + +D YGQAASNLVAGSNLE T+QQ++
Sbjct: 108 QTQSANNNASPAVL---------------APTNVTTDTYGQAASNLVAGSNLEQTIQQLI 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A
Sbjct: 153 DMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPA 196
Query: 241 AQQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFY 291
AQ P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+
Sbjct: 197 AQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNP------- 248
Query: 292 LFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351
QFQALRTMVQ+NPQILQP+LQELGKQNP L+RLI EH +
Sbjct: 249 ---------------------QFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHS 287
Query: 352 DFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 411
+FL+LINEP++G EG+ Q MP AV VTP E+EAI RLEAMGFDRA V+E F AC+
Sbjct: 288 EFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACD 347
Query: 412 KNEELAANYLLDHMHEFED 430
++E+LAANYLL++ +FED
Sbjct: 348 RDEQLAANYLLENAGDFED 366
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 229/434 (52%), Positives = 278/434 (64%), Gaps = 73/434 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG + YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVS-SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKV E F+VVML+KSK + S+G S+V A A TTSS P + P+TT P
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASA----TTSSTKPET--PSTTQSIAVP-- 112
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++P A PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 --------ASPITAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQ 238
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE VA A G Q AG+ A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPE---TAEVAVAVPGAQMAGSGAA- 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 206 -----PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND-------------- 245
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+N
Sbjct: 246 --------------QFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVN 291
Query: 359 EPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
EP EG G+ ++L Q MP A+ VTP E+EAI+RLEAMGFD+ALV+E F AC++NEEL
Sbjct: 292 EPYEGSDGDADMLDQPEQEMPHAINVTPAEQEAIQRLEAMGFDKALVIEAFLACDRNEEL 351
Query: 417 AANYLLDHMHEFED 430
AANYLL++ +FED
Sbjct: 352 AANYLLENSGDFED 365
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 228/433 (52%), Positives = 282/433 (65%), Gaps = 61/433 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK +++G T+++Q +
Sbjct: 61 DNKVTEDGFLVVMLSKSKTAAAG-------------------------TSSTQPVSTPPT 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + PA A APA A A A ++ SD YGQAASNLVAGS+LE T+QQI+
Sbjct: 96 TTPTSNSTPDAPAPDAQAPASKSASASDTATANAQSDTYGQAASNLVAGSSLEQTIQQIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 156 DVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQGIET 210
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--GTLDFLRNSQQVSMMFYLFASLL 297
A A GPN++PL++FP+ L G +AG G+LDFLRN+QQ
Sbjct: 211 GAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGLVLGSLDFLRNNQQ------------ 258
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
FQALR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+LI
Sbjct: 259 ----------------FQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAEFLQLI 302
Query: 358 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
NEP++G EG++ Q MP A+ VTP E+EAIERL AMGFDRALV+E F AC++NEELA
Sbjct: 303 NEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLACDRNEELA 362
Query: 418 ANYLLDHMHEFED 430
ANYLL++ +FED
Sbjct: 363 ANYLLENGADFED 375
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/432 (49%), Positives = 271/432 (62%), Gaps = 66/432 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +S SA P++ T+++ +++ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAS------SAGPSSTQPTSTTT-----STISSTTLAAPSTT 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 110 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 204
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR +
Sbjct: 205 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGND---------------- 248
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 249 ------------QFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEP 296
Query: 361 VEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EG +G+V Q MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAA
Sbjct: 297 YEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAA 356
Query: 419 NYLLDHMHEFED 430
NYLL+H +FED
Sbjct: 357 NYLLEHSADFED 368
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 224/432 (51%), Positives = 269/432 (62%), Gaps = 70/432 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+S QPT+T+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TPSSAGPSSIQPTSTTTSTISPTP 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A PA P PA SD YGQAAS LV+GS++E VQQI+
Sbjct: 103 L------AAPSIAVPASNSTPVQEQLPAQ------SDTYGQAASTLVSGSSVEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE A+P + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVAIPATNLSGVGSGA-------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ AP + GPN++PLDLFPQ + GTL+FLR +
Sbjct: 203 --ELTAPPASGGPNSSPLDLFPQEAVSDAGGGDLGTLEFLRGND---------------- 244
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 245 ------------QFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEP 292
Query: 361 VEGGEG--NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EG +G ++ Q MP AV VTPEE+EAI+RLEAMGFDRALV+E F AC++NEELAA
Sbjct: 293 YEGSDGDMDIFDQPEQEMPHAVNVTPEEQEAIQRLEAMGFDRALVIEAFLACDRNEELAA 352
Query: 419 NYLLDHMHEFED 430
NYLL+H +FED
Sbjct: 353 NYLLEHSADFED 364
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/436 (54%), Positives = 282/436 (64%), Gaps = 75/436 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN F+VVMLTKSK +AAP T+S A P+ST
Sbjct: 61 ENKVSENGFLVVMLTKSK---------TAAP-----TSSGATPSST-------------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AAPA PAPA ++ SDVYGQAASNLVAG+ LE T+QQ++
Sbjct: 93 ----------PQAAPATVTTTPSPAPPAPA-PTATSDVYGQAASNLVAGTGLEQTIQQLV 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR++ RALRAAYNNPERAVEYLYSGIP+ PPVARA A +
Sbjct: 142 DMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSA 201
Query: 241 AQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
A PAP T GPNA PLDLFPQ G G LDFLRN+
Sbjct: 202 APTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNA-------------- 247
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
QFQALRTMVQ NPQ+LQPMLQELG+QNP L+RLI E+ +FLRLI+
Sbjct: 248 --------------QFQALRTMVQQNPQLLQPMLQELGRQNPQLLRLINENHVEFLRLIS 293
Query: 359 EPVEGGE----GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
E GGE G++LGQLA AMPQ+++VTPEEREAIERLEAMGFDRA V+E F AC+KNE
Sbjct: 294 EA--GGENPEAGDLLGQLAGAMPQSISVTPEEREAIERLEAMGFDRASVIEAFLACDKNE 351
Query: 415 ELAANYLLDHMHEFED 430
+LAANYLL+H ++ED
Sbjct: 352 QLAANYLLEHSGDYED 367
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/436 (52%), Positives = 278/436 (63%), Gaps = 43/436 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHF--------- 231
Query: 236 PAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
PA + A AP SG PN++PL++FPQ + + G G+L+FLRN+ Q
Sbjct: 232 PADQETGGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQ--------- 282
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
FQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +FL
Sbjct: 283 -------------------FQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFL 323
Query: 355 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+LINEP+EG EG++ Q +P A+ VTP E+EAIERLEAMGFDRALV+E F AC++NE
Sbjct: 324 QLINEPLEGSEGDIFDQPEQELPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNE 383
Query: 415 ELAANYLLDHMHEFED 430
ELA NYLL++ ++ED
Sbjct: 384 ELAVNYLLENAGDYED 399
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/434 (53%), Positives = 275/434 (63%), Gaps = 72/434 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQG---------- 50
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
+K SSS A S P+NQ APPT T P SQ P
Sbjct: 51 ---------------TNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 90 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 146
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++
Sbjct: 147 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPA------DPV 200
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQVSMMFYLFASLL 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+
Sbjct: 201 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNA------------- 247
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QF++L ++VQANPQILQP+LQELGKQNP +++LIQ++Q +FLRLI
Sbjct: 248 ---------------QFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRLI 292
Query: 358 NEPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP EG E N+L Q A +PQ + VTPEE EAI RLE MGFDRALVLEV+FACNK+E L
Sbjct: 293 NEPAEGDEDENLLDQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVYFACNKDETL 352
Query: 417 AANYLLDHMHEFED 430
AANYLLDHM+EF+D
Sbjct: 353 AANYLLDHMNEFDD 366
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/435 (51%), Positives = 267/435 (61%), Gaps = 82/435 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK T+ SA +STQP
Sbjct: 61 ENKVSEEGFLVVMLSKSK------------------TSVSAGQSSTQPAQN--------- 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP A P + PA P S +D YGQAASNLVAG+NLE TVQQ++
Sbjct: 94 ---------PPVAQPVLSSTPAAQVTP-----SVQTDTYGQAASNLVAGNNLEQTVQQLM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R +G Q
Sbjct: 140 DMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG--------QA 191
Query: 240 QAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
+ PAP SG PN PL++FPQ + G G+L+FLRN+ Q
Sbjct: 192 TETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQ---------- 241
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
FQALRTMV NPQILQPMLQELGKQNP L+RLIQ+H +FL+
Sbjct: 242 ------------------FQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQ 283
Query: 356 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
LINEPV+ EG + Q MP A+ VTP E+ AIERLEAMGFDRALV+E F AC++NEE
Sbjct: 284 LINEPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEE 343
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +F+D
Sbjct: 344 LAANYLLENSGDFDD 358
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/433 (51%), Positives = 270/433 (62%), Gaps = 78/433 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V P D + VKKNIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK ++G T+S P T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTGTAG--------------------------TSSTQPVSTPP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P P A A A SD YGQAASNLVAGSNLE T+QQI+
Sbjct: 95 TTTPTSISTPAPDAQAFAQ----------------SDTYGQAASNLVAGSNLEQTLQQIM 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 139 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQATET 193
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQVSMMFYLFASLL 297
A A PN++PL++FP+ + G AG G +LDFLRN+QQ
Sbjct: 194 GAAPAAPAPAFGAPNSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQ------------ 241
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
FQALR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+LI
Sbjct: 242 ----------------FQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFLQLI 285
Query: 358 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
NEP++G EG++ Q MP A+ VTP E+EAIERLEAMGFDRALV+E F AC++NE+LA
Sbjct: 286 NEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEQLA 345
Query: 418 ANYLLDHMHEFED 430
ANYLL++ +FED
Sbjct: 346 ANYLLENAGDFED 358
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/435 (51%), Positives = 276/435 (63%), Gaps = 40/435 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA A
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD------ 234
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
+T + A + PN++PL++FPQ + + G G+L+FLRN+ Q
Sbjct: 235 -QETGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQ---------- 283
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
FQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +FL+
Sbjct: 284 ------------------FQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQ 325
Query: 356 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
LINEP+EG EG++ Q +P A+ VTP E+EAIERLEAMGFDRALV+E F AC++NEE
Sbjct: 326 LINEPLEGSEGDIFDQPEQELPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEE 385
Query: 416 LAANYLLDHMHEFED 430
LA NYLL++ ++ED
Sbjct: 386 LAVNYLLENAGDYED 400
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 227/434 (52%), Positives = 276/434 (63%), Gaps = 64/434 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HF+IEV+P D V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENK+ E+ F+VVML+KSK AP + +++ T T +
Sbjct: 61 ENKITEDGFLVVMLSKSK-----------APGSTGSSSTQTTTIVPTTTPTPNS------ 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S+PE+ PA PA + A + P ++ D YGQAASNLV+G+NLE T+Q+I+
Sbjct: 104 --TSIPEA---PAQPAASRNVAISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE V PVAR G
Sbjct: 156 DMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARPPTG-------QPI 208
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
A AP + GPN++PL++FPQ G G+L+FLRN+ Q
Sbjct: 209 DAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQ----------- 257
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
FQALR+MVQANPQILQ MLQELGKQNP L+RLIQ+HQ +FL+L
Sbjct: 258 -----------------FQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
INEP+EG EG++ Q MP A+ VTP E++AIERLEAMGFDR V+E F AC++NEEL
Sbjct: 301 INEPLEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEEL 360
Query: 417 AANYLLDHMHEFED 430
AANYLL+H EFED
Sbjct: 361 AANYLLEHGGEFED 374
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/376 (60%), Positives = 259/376 (68%), Gaps = 54/376 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQ--------------- 260
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINE
Sbjct: 261 -------------QFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINE 307
Query: 360 PVEGGEGNVLGQLASA 375
PVEG E G + S+
Sbjct: 308 PVEGEEWECYGTVGSS 323
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/437 (52%), Positives = 285/437 (65%), Gaps = 59/437 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ-TPAPTV 119
ENKV+EN F+VVMLTKS+ SSG + S++ ++ + + S++ + + S+ +
Sbjct: 61 ENKVSENGFLVVMLTKSR--SSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHLF 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S+ PPAA SDVYGQAASNLVAG+ LE T+QQ+
Sbjct: 119 WCSLSLVFLRRPPAA--------------------TSDVYGQAASNLVAGTGLEQTIQQL 158
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGGSWDR++ +RALRAAYNNPERAVEYLYSGIP+ PPVARA A T
Sbjct: 159 VDMGGGSWDRDSCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPT 218
Query: 240 QAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
A PAP T GPNA PLDLFPQ G G LDFLRN+
Sbjct: 219 AAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNA------------- 265
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQALRTMVQ NPQ+LQPMLQELG+QNP L+RLI E+ +FLRLI
Sbjct: 266 ---------------QFQALRTMVQQNPQLLQPMLQELGRQNPQLLRLINENHVEFLRLI 310
Query: 358 NEPVEGGE----GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+E GGE G++LGQLA AMPQ+++VTPEEREAIERLEAMGFDRA V+E F AC+KN
Sbjct: 311 SEA--GGENPEAGDLLGQLAGAMPQSISVTPEEREAIERLEAMGFDRASVIEAFLACDKN 368
Query: 414 EELAANYLLDHMHEFED 430
E+LAANYLL+H ++ED
Sbjct: 369 EQLAANYLLEHSGDYED 385
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 222/433 (51%), Positives = 272/433 (62%), Gaps = 71/433 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A S PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQFA---------SNPPT-------------TV 98
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P A A A + ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 99 STPNSTP-------LVQPQSANNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQL 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 152 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 202
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+
Sbjct: 203 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNP------------ 249
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQALR+MVQ+NPQILQP+LQELGKQNP L+ LIQEH +FL+L
Sbjct: 250 ----------------QFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQL 293
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
INEPVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+ +E+L
Sbjct: 294 INEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQL 353
Query: 417 AANYLLDHMHEFE 429
AANYLL++ +FE
Sbjct: 354 AANYLLENAGDFE 366
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/432 (49%), Positives = 270/432 (62%), Gaps = 68/432 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P++ T+++ +++ AP+
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASS------AGPSSTQPTSTTT-----STISSTTLAAPSTT 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 108 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 153 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR +
Sbjct: 203 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGND---------------- 246
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 247 ------------QFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEP 294
Query: 361 VEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EG +G+V Q MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAA
Sbjct: 295 YEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAA 354
Query: 419 NYLLDHMHEFED 430
NYLL+H +FED
Sbjct: 355 NYLLEHSADFED 366
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/433 (50%), Positives = 268/433 (61%), Gaps = 85/433 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A N PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFN--------PPT-------------TV 99
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 100 STPNSTPLVQP----------------------HVTTNTYGQAASNLVAGSNLEQTIQQL 137
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 138 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 188
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+
Sbjct: 189 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNP------------ 235
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQALR+MVQ+NPQILQP+LQELGKQNP L+ LIQEH +FL+L
Sbjct: 236 ----------------QFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQL 279
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
INEPVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+ +E+L
Sbjct: 280 INEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQL 339
Query: 417 AANYLLDHMHEFE 429
AANYLL++ +FE
Sbjct: 340 AANYLLENAGDFE 352
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/436 (53%), Positives = 277/436 (63%), Gaps = 73/436 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++EV P D V +VK+ IE QG + +P SQQ+LIHQGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN FVVVMLTK+K + +GAS PP+S+ T
Sbjct: 61 ENKVSENGFVVVMLTKAK-TGAGAS----------------PPSSSGTT----------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ A P+P P + + YGQAASNLVAG+ LE TVQQI+
Sbjct: 93 --QAPAPVAAATPPAPARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA--- 237
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIPE + PV G PA
Sbjct: 151 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESAEMRPV--------GGRSPAVAG 202
Query: 238 --QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
PA AP GPNA PLDLFPQG+P M GAG LDFLRN+ Q S
Sbjct: 203 VPAATPAAPAQAAPAGGPNAAPLDLFPQGMPGMAGGGGAGALDFLRNNPQAS-------- 254
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
LRTMVQANPQILQPMLQELGKQNP L+RLI ++Q +FLR
Sbjct: 255 ---------------------LRTMVQANPQILQPMLQELGKQNPALLRLINDNQAEFLR 293
Query: 356 LINEP-VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
LINE EG EG++LGQLA AMPQ++ VTPEEREAI+RLE MGF+R LV+E F AC+KNE
Sbjct: 294 LINEAGAEGAEGDILGQLAGAMPQSINVTPEEREAIDRLEGMGFERTLVIEAFLACDKNE 353
Query: 415 ELAANYLLDHMHEFED 430
+LAANYLL+H ++ED
Sbjct: 354 QLAANYLLEHAGDYED 369
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/432 (50%), Positives = 266/432 (61%), Gaps = 55/432 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI +P D V +KKNIE +QG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+K++E+ F+VVML KSK SS T + A + + + P + PA V
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSS---TGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASAVI 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +VPE+ P +PA AP SD YG+AASN+VAGSNLE T+Q I+
Sbjct: 118 PNTTVPEA---PLSPAFAP----------------SDTYGEAASNVVAGSNLEQTIQHIM 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
DMGGG WD V RALRAAYNNPERAV+YLYSGIPE + AVP AGN
Sbjct: 159 DMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGDQINAGNNAIS 218
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
AAP PN+ PL++FPQ + + AG G+L+FLRN+ Q
Sbjct: 219 DNGVAGAAPG---APNSLPLNMFPQETLSGVTGAGLGSLEFLRNNPQ------------- 262
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
FQ LR+MVQ NPQILQPML ELGKQNP L+R IQEH +FL+LIN
Sbjct: 263 ---------------FQTLRSMVQRNPQILQPMLLELGKQNPQLLRQIQEHHEEFLQLIN 307
Query: 359 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EPVE EG++ Q +PQ +TVT ++EAIERLEAMGFDR LV+E F AC++NEELA
Sbjct: 308 EPVEASEGDMFDQPEQDVPQEITVTAADQEAIERLEAMGFDRGLVIEAFLACDRNEELAV 367
Query: 419 NYLLDHMHEFED 430
NYLL++ +FED
Sbjct: 368 NYLLENAGDFED 379
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/428 (52%), Positives = 271/428 (63%), Gaps = 68/428 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQ 238
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 239 TQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+ ++ A SG PNA+PL+LFPQG N G AG GTL+FLR++Q
Sbjct: 209 SSTRE----ASLSGIPNASPLNLFPQGDANDGGGAGGGTLEFLRHNQ------------- 251
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQALR MV NPQILQPMLQEL K+NP L+RLIQE+ +FL+LI
Sbjct: 252 ---------------QFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLI 296
Query: 358 NEPVEGGEGNVLGQ-LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP +G +G+ L Q MP ++ VTPEE+EAI RLE MGFDRA V+E FFAC++NE+L
Sbjct: 297 NEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQL 356
Query: 417 AANYLLDH 424
AANYLL+H
Sbjct: 357 AANYLLEH 364
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/428 (52%), Positives = 271/428 (63%), Gaps = 68/428 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQ 238
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 239 TQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+ ++ A SG PNA+PL+LFPQG N G AG GTL+FLR++Q
Sbjct: 209 SSTRE----ASLSGIPNASPLNLFPQGDANDGDGAGGGTLEFLRHNQ------------- 251
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQALR MV NPQILQPMLQEL K+NP L+RLIQE+ +FL+LI
Sbjct: 252 ---------------QFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLI 296
Query: 358 NEPVEGGEGNVLGQ-LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP +G +G+ L Q MP ++ VTPEE+EAI RLE MGFDRA V+E FFAC++NE+L
Sbjct: 297 NEPFDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQL 356
Query: 417 AANYLLDH 424
AANYLL+H
Sbjct: 357 AANYLLEH 364
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/434 (53%), Positives = 272/434 (62%), Gaps = 48/434 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++ V ++ VS VK+ IE +QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKVAEN F+VVMLTK ++ S T +S T
Sbjct: 61 DNKVAENGFLVVMLTKVRLHES-------------NTGTSRWRTRVVAPAAPAPAPAPAP 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P A P APA A A APA A D YGQAASNLVAGS LE+TVQQI+
Sbjct: 108 ASTSTPAPAAPAPAPAAVAATPGAGAPAVALCRGTGDGYGQAASNLVAGSALESTVQQIM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE VP PVAR G A A
Sbjct: 168 DMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPA 227
Query: 240 QAQQPAAPAPT---SGPNANPLDLFPQGLP-NMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
A A GPNA PLDLFPQG+P G AG G LDFLRN+
Sbjct: 228 GPGAAGAAAVAANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNP----------- 276
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QFQALRTMVQANPQILQPMLQELGKQNP L+RLI E+Q +FLR
Sbjct: 277 -----------------QFQALRTMVQANPQILQPMLQELGKQNPALLRLINENQAEFLR 319
Query: 356 LIN--EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
LIN G+ +G+LA PQ+V VTPEERE+IERLEAMGF+RALV+E F AC+KN
Sbjct: 320 LINEAGAEGAEGGDAVGRLAGGYPQSVNVTPEERESIERLEAMGFNRALVIEAFLACDKN 379
Query: 414 EELAANYLLDHMHE 427
E+LAANYLL+H ++
Sbjct: 380 EQLAANYLLEHAND 393
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 272/437 (62%), Gaps = 85/437 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK S S ++ + A TT+ +++ TPA V
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAP---------SSNSTPAVEVQ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + +D YG+AASNLVAG NLE T+QQI+
Sbjct: 112 PP-------------------------------TQTDTYGEAASNLVAGDNLEQTIQQIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAG--GQAGNPPA 237
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA AG + G PA
Sbjct: 141 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPAGQATETGAAPA 200
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
AP SG PN++PL++FPQ GS G G+LDFLRN+ Q
Sbjct: 201 ----------APLSGVPNSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQ-------- 242
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
FQ LR+MVQANPQILQPMLQELGKQNP L+R+IQEH +F
Sbjct: 243 --------------------FQTLRSMVQANPQILQPMLQELGKQNPQLLRMIQEHHAEF 282
Query: 354 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
L+L+NEP+EG EG++ Q MP A+ VTP E+ AIERL AMGFDRALV+E F AC++N
Sbjct: 283 LQLLNEPLEGSEGDIFDQGEQDMPHAINVTPAEQAAIERLVAMGFDRALVIEAFLACDRN 342
Query: 414 EELAANYLLDHMHEFED 430
E LAANYLL++ +FED
Sbjct: 343 EVLAANYLLENGGDFED 359
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 225/407 (55%), Positives = 270/407 (66%), Gaps = 52/407 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQVSMM 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQ------- 281
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
L QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+
Sbjct: 282 ---------------------LPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQEN 320
Query: 350 QTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEA 395
Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREAI+R ++
Sbjct: 321 QAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREAIQRCKS 367
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 213/431 (49%), Positives = 259/431 (60%), Gaps = 89/431 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
GPN++PL++FPQ + + AG G+LDFLRN
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRN----------------- 243
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
NP QELGKQNP L+RLIQEH +FL+LINE
Sbjct: 244 ------------------------NP-------QELGKQNPGLLRLIQEHHGEFLQLINE 272
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAAN
Sbjct: 273 PVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAAN 332
Query: 420 YLLDHMHEFED 430
YLL++ +FED
Sbjct: 333 YLLENAGDFED 343
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 234/432 (54%), Positives = 266/432 (61%), Gaps = 78/432 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ G+S SAAPA T + APPT T P QT A A
Sbjct: 52 --------------------NKGSS--SAAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 88 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 140 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 196
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+
Sbjct: 197 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNN----------------- 236
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ L +VQANPQILQP+LQELGKQNP +M+LIQE+Q +F+R+INEP
Sbjct: 237 -----------VQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEP 285
Query: 361 VEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
+EG E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+L A
Sbjct: 286 LEGDEENEMMLDQMADAA-ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLTA 344
Query: 419 NYLLDHMHEFED 430
NYLLDHMHEF++
Sbjct: 345 NYLLDHMHEFDN 356
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 220/435 (50%), Positives = 268/435 (61%), Gaps = 89/435 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPA-------QEQPA---AQTDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 251
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 252 -----------------------------------QELGKQNPQLLRLIQENQAEFLQLV 276
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 277 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 336
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 337 LAANYLLENSGDFED 351
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/257 (73%), Positives = 204/257 (79%), Gaps = 33/257 (12%)
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+QQILDMGGGSWDR+TV+RALRAA+NNPERAV+YLYSGIPEQ PPV + A Q GNP
Sbjct: 2 IQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNP 61
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQVSMMFYLFA 294
PA A A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQ
Sbjct: 62 PA---AAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQ--------- 109
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
FQALR MVQANPQILQPMLQELGKQNPHLMRLIQ+HQ DFL
Sbjct: 110 -------------------FQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFL 150
Query: 355 RLINEPVEGGEGNVLGQLA-SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
RLINEPVEGGEGN+LGQ A +AMPQAV+VTPEEREAIERLEAMGFDRA VLEV+FACNKN
Sbjct: 151 RLINEPVEGGEGNILGQPAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKN 210
Query: 414 EELAANYLLDHMHEFED 430
EELAANYLLDHMHEF++
Sbjct: 211 EELAANYLLDHMHEFDE 227
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 223/432 (51%), Positives = 270/432 (62%), Gaps = 70/432 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S + +S+QP S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGT------------------SSSQP---SNTPAARQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + Y AAS+L++GSN++ + Q+
Sbjct: 100 PPLDAPQQAPQPPVAPTTTSQPEGLPAQAP------PNTYDNAASSLLSGSNVDTMINQL 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 154 MEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPVTAEVAVP------IGGQGAN--- 204
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
T + P A SG PN PL+LFPQG N G AG G LDFLRN+Q
Sbjct: 205 -TTDRAPTGEAGLSGIPNTAPLNLFPQGGSNAGGGAGGGPLDFLRNNQ------------ 251
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQA+R MV NPQILQPML EL KQNP ++RLI+E+ +FL+L
Sbjct: 252 ----------------QFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQL 295
Query: 357 INEPVEGGEGNVLGQ-LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+NEP EGGEG+ L Q MP A++VTPEE++AI RLE+MGFDRA V+E F AC++NEE
Sbjct: 296 LNEPFEGGEGDFLDQPEEDEMPHAISVTPEEQDAIGRLESMGFDRARVIEAFIACDRNEE 355
Query: 416 LAANYLLDHMHE 427
LAANYLL+H E
Sbjct: 356 LAANYLLEHAGE 367
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 221/432 (51%), Positives = 265/432 (61%), Gaps = 71/432 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSS---------------------QHSNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
T + P A SG PN PLDLFPQG N G AG G LDFLRN+
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQGASNAGGGAGGGPLDFLRNNP------------ 250
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQA+R MV NPQILQPML EL KQNP ++RLI+E+ +FL+L
Sbjct: 251 ----------------QFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQL 294
Query: 357 INEPVEGGEGNVLGQ-LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+NEP EGGEG+ L Q MP A++VTPEE+EAI RLE+MGFDRA V+E F AC++NEE
Sbjct: 295 LNEPFEGGEGDFLDQPEEDEMPHAISVTPEEQEAIGRLESMGFDRARVIEAFLACDRNEE 354
Query: 416 LAANYLLDHMHE 427
LAANYLL+H E
Sbjct: 355 LAANYLLEHAGE 366
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 357 bits (915), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 208/435 (47%), Positives = 261/435 (60%), Gaps = 73/435 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK S G++ ++ + S P ++ P T +
Sbjct: 61 ENKVTEEGFLVVMLSKSK--SGGSAGQASVQCVRLLLFHSLFPLPHLRLSSIYNPVFTCS 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++ +D YGQAAS LV+GS+LE VQQI+
Sbjct: 119 C------------------------FTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 209
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QV+
Sbjct: 210 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQVA---------- 252
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
+ S F L +PMLQELGKQNP L+RLIQE+Q +FL+L+
Sbjct: 253 ----ILTISAFSL----------------NCEPMLQELGKQNPQLLRLIQENQAEFLQLV 292
Query: 358 NEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEE
Sbjct: 293 NEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEE 352
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ +FED
Sbjct: 353 LAANYLLENSGDFED 367
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 204/315 (64%), Positives = 232/315 (73%), Gaps = 45/315 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR A GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQV 286
GAGTLDFLRNSQQV
Sbjct: 285 PGAGTLDFLRNSQQV 299
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 216/433 (49%), Positives = 261/433 (60%), Gaps = 72/433 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSS---------------------QHSNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQVSMMFYLFAS 295
T + P A SG PN PLDLFPQ + G LDFLRN+
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNP----------- 251
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QFQA+R MV NPQILQPML EL KQNP ++RLI+E+ +FL+
Sbjct: 252 -----------------QFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQ 294
Query: 356 LINEPVEGGEGNVLGQ-LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
L+NEP EGGEG+ L Q MP A++VTPEE+EAI RLE+MGFDRA V+E F AC++NE
Sbjct: 295 LLNEPFEGGEGDFLDQPEEDEMPHAISVTPEEQEAIGRLESMGFDRARVIEAFLACDRNE 354
Query: 415 ELAANYLLDHMHE 427
ELAANYLL+H E
Sbjct: 355 ELAANYLLEHAGE 367
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 212/412 (51%), Positives = 257/412 (62%), Gaps = 64/412 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL ENK+ E+ F+VVML+KSK
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSK---- 90
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
AP + +++ T T + S+PE+ PA PA + A
Sbjct: 91 -------APGSTGSSSTQTTTIVPTTTPTPNS--------TSIPEA---PAQPAASRNVA 132
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
+ P ++ D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYNN
Sbjct: 133 ISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNN 189
Query: 203 PERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
PERAV+YLYSGIPE V PVAR G A AP + GPN++PL++F
Sbjct: 190 PERAVDYLYSGIPETAEVAAPVARPPTG-------QPIDAGGATAPPVSGGPNSSPLNMF 242
Query: 262 PQ---GLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALR 318
PQ G G+L+FLRN+ Q FQALR
Sbjct: 243 PQESLAAAAGGGGGSLGSLEFLRNNPQ----------------------------FQALR 274
Query: 319 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 378
+MVQANPQILQ MLQELGKQNP L+RLIQ+HQ +FL+LINEP+EG EG++ Q MP
Sbjct: 275 SMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPH 334
Query: 379 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
A+ VTP E++AIERLEAMGFDR V+E F AC++NEELAANYLL+H EFED
Sbjct: 335 AINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHGGEFED 386
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 264/427 (61%), Gaps = 68/427 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V E F+VVML+KSK S+S +S QP++T P +
Sbjct: 61 ENQVGEAGFLVVMLSKSKASASSGG------------------SSAQPSST-----PVTS 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V + P P PA P+S+V D+ AAS+L++GSNL+ + QI+
Sbjct: 98 QAPPVAQPQAPQPQVPSTTTSQPERPPAETPLSTV-DI---AASDLLSGSNLDTMINQIM 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQ 238
+MGGGSWDR+ V RALRAAYNNPERA++YLYSGIP + AVP V GQ N
Sbjct: 154 EMGGGSWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVAVPVV------GQGAN---- 203
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
T A P + PN PLDLFPQG + G AG G+LDFLRN+Q
Sbjct: 204 TTAAAPGETGLSGIPNTAPLDLFPQGASHAGGAAGGGSLDFLRNNQ-------------- 249
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
QFQALR MV NPQILQPMLQEL KQNP L+RLIQE+ +FL+L+N
Sbjct: 250 --------------QFQALREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLQLLN 295
Query: 359 EPVEGGEGNVLGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
E EGG+G+ L Q MP A++VTPEE+EAI RLEAMGF+RA V+E FFAC++NE+LA
Sbjct: 296 ETFEGGDGDFLDQADQDEMPHAISVTPEEQEAIGRLEAMGFERARVIEAFFACDRNEQLA 355
Query: 418 ANYLLDH 424
ANYLL+H
Sbjct: 356 ANYLLEH 362
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 263/442 (59%), Gaps = 87/442 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GK+LKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVS----------SSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
EN+V+E+ +VVML+KSK S SS T A P Q Q S+ P PTT
Sbjct: 61 ENQVSEDGSLVVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQIQAAESSVP----PTT 116
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
TSQ P PA P+++V V AS+L++GS
Sbjct: 117 TSQPERP-----------------------------PAETPLNTVDHV----ASDLLSGS 143
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASA 228
NL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AVP
Sbjct: 144 NLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAVP------V 197
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSM 288
G Q N T A P + PN PL+LFPQG N G AG G+LDFLRN+Q
Sbjct: 198 GPQGAN---STDAAPPGVTGLSGIPNTAPLNLFPQGASNAGGAAGGGSLDFLRNNQ---- 250
Query: 289 MFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 348
QFQALR MV NPQILQPMLQEL KQNP L+RLIQE
Sbjct: 251 ------------------------QFQALREMVHTNPQILQPMLQELSKQNPQLLRLIQE 286
Query: 349 HQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 407
+ +FL L+NE + G+G+ L Q MP A++VTPEE+EAI RLEAMGFDRA V+E F
Sbjct: 287 NNDEFLGLLNENFDAGDGDFLDQPDEDEMPHAISVTPEEQEAIGRLEAMGFDRARVIEAF 346
Query: 408 FACNKNEELAANYLLDHMHEFE 429
FAC++NE+LA NYLL+H + E
Sbjct: 347 FACDRNEQLAVNYLLEHAGDEE 368
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 215/392 (54%), Positives = 252/392 (64%), Gaps = 57/392 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A VS+ +D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSA--------PAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNS---------------- 258
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ L +VQANPQILQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP
Sbjct: 259 ------------QFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEP 306
Query: 361 VEGGEGN--VLGQLASAMPQAVTVTPEEREAI 390
+EG E N +L Q+A A + + VTPEE EAI
Sbjct: 307 LEGDEENEMMLDQMADAT-ETIAVTPEENEAI 337
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 223/426 (52%), Positives = 274/426 (64%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQV 286
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G+NAGAG
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGAL--- 286
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
R L QFQAL +VQANPQILQPMLQELGKQNP ++RLI
Sbjct: 287 -------------------DALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLI 327
Query: 347 QEHQTDFLRLINE-PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 405
QE+Q +FLRL+NE P G GN+LG LA+ MPQAV VTPEEREAI+R++ +L
Sbjct: 328 QENQAEFLRLVNETPESGAGGNILGALAAQMPQAVQVTPEEREAIQRVQ-------YILM 380
Query: 406 VFFACN 411
+ F C
Sbjct: 381 ICFLCK 386
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/278 (58%), Positives = 196/278 (70%), Gaps = 36/278 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
SD YGQAASNLVAGS+LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 105 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 164
Query: 216 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
E V PVAR A + +T A A GPN++PL++FP+ L G +AG
Sbjct: 165 ETAEVAVPVARFPA-----DQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGL 219
Query: 275 --GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
G+LDFLRN+QQ FQALR+MVQANPQILQPML
Sbjct: 220 VLGSLDFLRNNQQ----------------------------FQALRSMVQANPQILQPML 251
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 392
QELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP E+EAIER
Sbjct: 252 QELGKQNPQLLRMIQEHNAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIER 311
Query: 393 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
L AMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 312 LVAMGFDRALVIEAFLACDRNEELAANYLLENGADFED 349
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/251 (60%), Positives = 174/251 (69%), Gaps = 37/251 (14%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQA 57
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+
Sbjct: 58 AQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNN------------------ 96
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361
QFQ L +VQANPQILQP+LQELGKQNP +M+LIQE+Q +F+R+INEP+
Sbjct: 97 ----------VQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEPL 146
Query: 362 EGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
EG E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+L AN
Sbjct: 147 EGDEENEMMLDQMADAA-ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLTAN 205
Query: 420 YLLDHMHEFED 430
YLLDHMHEF++
Sbjct: 206 YLLDHMHEFDN 216
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/251 (59%), Positives = 173/251 (68%), Gaps = 41/251 (16%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQA 54
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
QPA +GPNANPLDLFPQ LPN +NA G LD LRN+
Sbjct: 55 VQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNS----------------- 93
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361
QFQ L +VQANPQILQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+
Sbjct: 94 -----------QFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEPL 142
Query: 362 EGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
EG E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+LAAN
Sbjct: 143 EGDEENEMMLDQMADAT-ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLAAN 201
Query: 420 YLLDHMHEFED 430
YLLDHMHEF++
Sbjct: 202 YLLDHMHEFDN 212
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 185/279 (66%), Gaps = 44/279 (15%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D YGQAASNLVAGS+LE T+QQI+D+GGGSWDR+TV RALRAAYNNP+RAV+YLYS IP
Sbjct: 46 TDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIP 105
Query: 216 E--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSN 271
E + AVP A P +QT GP N++PL++ PQ +P G+
Sbjct: 106 EAAEIAVPA---------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAG 156
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
AG G+L+ + Q+ FQALR+MVQ+NPQILQP+
Sbjct: 157 AGIGSLELYKKCQE----------------------------FQALRSMVQSNPQILQPV 188
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 391
LQELGKQN L RLIQEH +FL+LIN+PVEG EG++ Q MP A+ VTP E+EAI
Sbjct: 189 LQELGKQNLSLSRLIQEHHGEFLQLINDPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIG 248
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
RLEAMGFDRA V+E AC+++E+LAANYLL++ +FED
Sbjct: 249 RLEAMGFDRASVIE---ACDRDEQLAANYLLENAGDFED 284
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 165/297 (55%), Positives = 197/297 (66%), Gaps = 23/297 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQV 286
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QV
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQV 285
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 170/289 (58%), Gaps = 49/289 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+STQ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TASSAGPSSTQ------LAAPSTT 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 97 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 142 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG----------S 191
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QV ++
Sbjct: 192 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQVVII 240
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 167/258 (64%), Gaps = 54/258 (20%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A A
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAA 44
Query: 242 QQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
Q P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+
Sbjct: 45 QYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNP-------- 95
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
QFQALRTMVQ+NPQILQP+LQELGKQNP L+RLI EH ++
Sbjct: 96 --------------------QFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSE 135
Query: 353 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
FL+LINEP++G EG+ Q MP AV VTP E+EAI RLEAMGFDRA V+E F AC++
Sbjct: 136 FLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDR 195
Query: 413 NEELAANYLLDHMHEFED 430
+E+LAANYLL++ +FED
Sbjct: 196 DEQLAANYLLENAGDFED 213
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 167/456 (36%), Positives = 235/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P S P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 168/461 (36%), Positives = 238/461 (51%), Gaps = 94/461 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q + P P
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQ----APIPVPA 116
Query: 119 VAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPV-------------SSVSD 157
+A P S P S PP +A A PAPA A PA PA PV SS S+
Sbjct: 117 LA-PTSTPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 175
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-- 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 216 -EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
E AV PP A ++ Q+ A +SG G P
Sbjct: 233 RESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP------ 275
Query: 273 GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 276 ----LEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALL 303
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVT 383
Q++G++NP L++ I +HQ F++++NEPV+ + + S + VT
Sbjct: 304 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVT 363
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 364 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 238/456 (52%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ A + +N A TT+ + T+T T S TPAP +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQ-SNSATTTAVSSSTATAVTQAS-TPAPALA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPVSSV-------------SDVYG 160
P S P S P + + PAPA PA P PV++ S+++
Sbjct: 119 -PTSTPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFE 177
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 229
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LD 278
G+ +Q + P A A T P ++ + + +G L+
Sbjct: 230 ------------GDRESQAVVEPPQA-AGTGAPQSSAVAAGAATTTATTTTTSSGGHPLE 276
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
FLRN Q FQ +R ++Q NP +L +LQ++G++
Sbjct: 277 FLRNQPQ----------------------------FQQMRQIIQQNPSLLPALLQQIGRE 308
Query: 339 NPHLMRLIQEHQTDFLRLINEPVE----------GGEGNVLGQLASAMPQAVTVTPEERE 388
NP L++ I +HQ F++++NEPV+ G + + S + VTP+E+E
Sbjct: 309 NPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGSGNAGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 234/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 234/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/456 (35%), Positives = 232/456 (50%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 234/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 234/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN Q FQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQPQ----------------------------FQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 234/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN Q FQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQPQ----------------------------FQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/456 (36%), Positives = 233/456 (51%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A P PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 230/468 (49%), Gaps = 101/468 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQ------------- 107
E K+ E +FVVVM+TK K + +A PA +++ +P T +
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPT 114
Query: 108 ------PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVS 156
T S TPA T A + P A P PA PA +PAPA + SS S
Sbjct: 115 PALAPTSTPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P PP P +PA + + +
Sbjct: 232 DRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTS 271
Query: 273 GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
G L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 272 GGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALL 303
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG----------------EGNVLGQLASAM 376
Q++G++NP L++ I +HQ F++++NEPV+ G + + S
Sbjct: 304 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGH 363
Query: 377 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 364 MNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 411
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 156/450 (34%), Positives = 229/450 (50%), Gaps = 77/450 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTT------- 111
E K+ E +FVVVM+TK K ++ A+T + PA +SS P Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 112 ----SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
S TPAPT A + P SA P PA PA P A +P SS S+++
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
G+ +Q P A + + P++ +N G L+FLR
Sbjct: 231 -----------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLR 279
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
N QFQ +R ++Q NP +L +LQ++G++NP
Sbjct: 280 NQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQ 311
Query: 342 LMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIER 392
L++ I +HQ F++++NEPV+ + + S + VTP+E+EAIER
Sbjct: 312 LLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIER 371
Query: 393 LEAMGFDRALVLEVFFACNKNEELAANYLL 422
L+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 372 LKALGFPEGLVIQAYFACEKNENLAANFLL 401
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/194 (68%), Positives = 140/194 (72%), Gaps = 30/194 (15%)
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
SGIPE VPPVA + QAGN PAQ Q AP P GPNA+PL+LFPQGLP++GSN
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 272 -AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQP 330
AGA TLDFLRNSQQ FQALR MVQANPQILQP
Sbjct: 61 TAGANTLDFLRNSQQ----------------------------FQALRAMVQANPQILQP 92
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTPEEREA 389
MLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEG NVLGQLA+AMPQA++VTPEEREA
Sbjct: 93 MLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGTNVLGQLAAAMPQAISVTPEEREA 152
Query: 390 IERLEAMGFDRALV 403
IERLE MGFD LV
Sbjct: 153 IERLEQMGFDHDLV 166
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 164/454 (36%), Positives = 232/454 (51%), Gaps = 84/454 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P S + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/232 (58%), Positives = 152/232 (65%), Gaps = 29/232 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI+V D V DVKKNIE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST-QPTTTSQTPAPTV 119
EN+VAENSF+V+ML+K+KVSSSGAS SAAP +S PP ST QP A TV
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQPL------ASTV 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S P SNL+AGS LE T+QQI
Sbjct: 115 GQGESNPAQG----------------------PVVTPPTTVVPESNLIAGSTLEPTIQQI 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
L+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ P VA ++ GQ
Sbjct: 153 LEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 229/469 (48%), Gaps = 103/469 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---------------- 104
E K+ E +FVVVM+TK K + +A PA Q +S+ PT
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 105 ----STQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
+G L+FLRN QFQ +R ++Q NP +L +
Sbjct: 271 SGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPAL 302
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGE---------------GNVLGQLASA 375
LQ++G++NP L++ I +HQ F++++NEPV E G G + + S
Sbjct: 303 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSG 362
Query: 376 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 363 HMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 411
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 228/451 (50%), Gaps = 81/451 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +T + A Q+ ++ +S+ T Q PAP V
Sbjct: 61 EYKIDEKNFVVVMVTKPK----AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVL 116
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPV-------------SSVSDVYG 160
P P S P A + PAP PA PA PV SS S+++
Sbjct: 117 APTPSPASVTPAPATSSEPAPTSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE 176
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 228
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
G+ +Q P A + + P++ ++ G L+FL
Sbjct: 229 ------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFL 276
Query: 281 RNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNP 340
RN QFQ +R ++Q NP +L +LQ++G++NP
Sbjct: 277 RNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENP 308
Query: 341 HLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIE 391
L++ I +HQ F++++NEPV+ + + S + VTP+E+EAIE
Sbjct: 309 QLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIE 368
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLL 422
RL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 RLKALGFPEGLVIQAYFACEKNENLAANFLL 399
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 229/454 (50%), Gaps = 100/454 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P V+
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPT-VPPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAV 220
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP E+T
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERT-- 221
Query: 221 PPVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
R+S Q A T + QPAAPAPTS N L+F
Sbjct: 222 ----RSSVNNPQQTTGTAWTGSAQPAAPAPTSRENP---------------------LEF 256
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
LRN QF +R ++Q NP +L +L +LG++N
Sbjct: 257 LRNQP----------------------------QFHQMRQILQQNPSLLPALLHQLGREN 288
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAM 396
PHL++ I +HQ +F++++NEP++ V + SA Q + VTP+E+EAIERL+A+
Sbjct: 289 PHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQQMDHLQVTPQEKEAIERLKAL 346
Query: 397 GFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 347 GFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/456 (35%), Positives = 232/456 (50%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+R VEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN Q FQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQPQ----------------------------FQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AI RL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 369 AIGRLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 227/453 (50%), Gaps = 98/453 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPT-VPPAS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP +
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER--- 220
Query: 222 PVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
AR+S Q A T + QPAAPAPTS N L+FL
Sbjct: 221 --ARSSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFL 257
Query: 281 RNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNP 340
RN QF +R ++Q NP +L +L +LG++NP
Sbjct: 258 RNQP----------------------------QFHQMRQILQQNPSLLPALLHQLGRENP 289
Query: 341 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMG 397
HL++ I +HQ +F++++NEP++ V + SA Q + VTP+E+EAIERL+A+G
Sbjct: 290 HLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQQMDHLQVTPQEKEAIERLKALG 347
Query: 398 FDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
F LV++ +FAC KNE LAAN+LL F+D
Sbjct: 348 FPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/452 (34%), Positives = 225/452 (49%), Gaps = 86/452 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV------------SSSGASTVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K S++G S +AAP + T +A P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAPTPVSAPTPAAAPVPAPD 120
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-----VYGQAA 163
TT A +S P S P PA PA AP + S+ D ++ A
Sbjct: 121 PTTPAPAAVAC---ESEPVSTPKEEKPAEKPADAPTAVSLSSNESTTGDTSRSNLFEDAI 177
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVP 221
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 178 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAE 234
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P AS G +Q+ AA T +P ++ G L+FLR
Sbjct: 235 PTQAASTG--------TSQSSAVAAAVAT--------------IPTTATSLGGHPLEFLR 272
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
N QFQ +R ++Q NP +L +LQ++G++NP
Sbjct: 273 NQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQ 304
Query: 342 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT-----------VTPEEREAI 390
L++ I +HQ F+ ++NEPV + G SA V VTP+E+EAI
Sbjct: 305 LLQQISQHQEHFIHMLNEPVIESRQGLSGSDDSASTGGVAEAGNGHMSYIQVTPQEKEAI 364
Query: 391 ERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
ERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 365 ERLKALGFPEGLVIQAYFACEKNENLAANFLL 396
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/461 (34%), Positives = 229/461 (49%), Gaps = 88/461 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K +S + S+ A AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQA 162
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLE 277
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
FLRN QFQ +R ++Q NP +L +LQ++G++
Sbjct: 278 FLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRE 309
Query: 339 NPHLMRLIQEHQTDFLRLINEPVEGG---------------EGNVLGQLASAMPQAVTVT 383
NP L++ I +HQ F++++NEPV+ G + + S + VT
Sbjct: 310 NPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVT 369
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 370 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 410
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 158/450 (35%), Positives = 226/450 (50%), Gaps = 92/450 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPT-VPPAS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV----------------SDVYGQAAS 164
P + E+ P + A P S+ S ++ A S
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATS 169
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + A
Sbjct: 170 ALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----A 221
Query: 225 RASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
R+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 222 RSSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQ 260
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
QF +R ++Q NP +L +L +LG++NPHL+
Sbjct: 261 P----------------------------QFHQMRQILQQNPSLLPALLHQLGRENPHLL 292
Query: 344 RLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMGFDR 400
+ I +HQ +F++++NEP++ V + SA Q + VTP+E+EAIERL+A+GF
Sbjct: 293 QQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQQMDHLQVTPQEKEAIERLKALGFPE 350
Query: 401 ALVLEVFFACNKNEELAANYLLDHMHEFED 430
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 351 GLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 230/456 (50%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQ------------TTSSAPPTSTQ 107
E K+ E +FVVVM+TK K VS+ + +A +N + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
T S TPA T P+ P SA PA PA P A +P P SS S+++
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKPAETPV-ATSPTPTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGAGTLD 278
G+ +Q P A A T P ++ + +++G L+
Sbjct: 231 -----------GDRESQAVVDPPQA-AGTGTPQSSAVAAAAATTTATTTTTTSSGGHPLE 278
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
FLRN QFQ +R ++Q NP +L +LQ++G++
Sbjct: 279 FLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRE 310
Query: 339 NPHLMRLIQEHQTDFLRLINEPVEGG------------EGNVLGQLASAMPQAVTVTPEE 386
NP L++ I +HQ F++++NEPV+ + + S + VTP+E
Sbjct: 311 NPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGSGGIAEAGSGHMNYIQVTPQE 370
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 371 KEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 406
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 233/464 (50%), Gaps = 100/464 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-----------------SSAPP 103
E K+ E +FVVVM+TK K + + APA Q++ +S P
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPA 114
Query: 104 TSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA---PAPAPV-------- 152
+ PT+ TPAP +AP + S P PA+ A PA PA PA +P
Sbjct: 115 PALAPTS---TPAP-IAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGD 170
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 213 GIP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
GIP E AV +A++ G A T+ +P
Sbjct: 228 GIPGDRESQAVVDPPQAASTGAPQASAVAAAGATTTAATTTTSSGGHP------------ 275
Query: 270 SNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQ 329
L+FLRN Q FQ +R ++Q NP +L
Sbjct: 276 -------LEFLRNQPQ----------------------------FQQMRQIIQQNPSLLP 300
Query: 330 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAV 380
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S +
Sbjct: 301 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI 360
Query: 381 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 361 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 404
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 229/469 (48%), Gaps = 104/469 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---------------- 104
E K+ E +FVVVM+TK K + +A PA Q +S+ PT
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 105 ----STQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
+G L+FLRN QFQ +R ++Q NP +L +
Sbjct: 271 SGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLL-AL 301
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGE---------------GNVLGQLASA 375
LQ++G++NP L++ I +HQ F++++NEPV E G G + + S
Sbjct: 302 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSG 361
Query: 376 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+ VTP+E+EAIERL+A+GF LVL+ +FAC KNE LAAN+LL
Sbjct: 362 HMNYIQVTPQEKEAIERLKALGFPEGLVLQAYFACEKNENLAANFLLQQ 410
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 160/453 (35%), Positives = 226/453 (49%), Gaps = 98/453 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPT-VPPAS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP +
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER--- 220
Query: 222 PVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
AR+S Q A T + QPAAPAPTS N L+FL
Sbjct: 221 --ARSSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFL 257
Query: 281 RNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNP 340
RN QF +R ++Q NP +L +L +LG++NP
Sbjct: 258 RNQP----------------------------QFHQMRQILQQNPSLLPALLHQLGRENP 289
Query: 341 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMG 397
HL++ I +HQ +F++++NEP++ V + SA Q + VTP+E+EAIERL+A+G
Sbjct: 290 HLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQQMDHLQVTPQEKEAIERLKALG 347
Query: 398 FDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
F LV++ +FAC KN LAAN+LL F+D
Sbjct: 348 FPEGLVVQAYFACEKNGNLAANFLLQ--QNFDD 378
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 226/464 (48%), Gaps = 98/464 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
+G L+FLRN QFQ +R ++Q NP +L +
Sbjct: 271 SGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPAL 302
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA-----------V 380
LQ++G++NP L++ I +HQ F++++NEPV+ G +
Sbjct: 303 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGGGGGGGIAEAGSGHMNYI 362
Query: 381 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 363 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 406
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 146/221 (66%), Gaps = 33/221 (14%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+S ++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YL
Sbjct: 157 PLSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYL 216
Query: 211 YSGIPEQTAVP-PVARASAGGQAGNPPAQT----QAQQPAAPAPTSGPNANPLDLFPQGL 265
YSGIPE V PVA A + G + T + A + PN++PL++FPQ
Sbjct: 217 YSGIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQET 276
Query: 266 PNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANP 325
+ + G G+L+FLRN+ QFQALR MVQANP
Sbjct: 277 LSGAAAGGLGSLEFLRNNH----------------------------QFQALRAMVQANP 308
Query: 326 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 366
QILQPMLQELGKQNPHL+RLIQEH +FL+LINEP+EG EG
Sbjct: 309 QILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEG 349
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 227/469 (48%), Gaps = 103/469 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P +A + G +P A A +
Sbjct: 231 GDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTTTT 270
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
+G L+FLRN QFQ +R ++Q NP +L +
Sbjct: 271 SGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPAL 302
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA------------ 379
LQ++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 303 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGEGGGGGGGGGGGGGGGIAEAGSG 362
Query: 380 ----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 363 HMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 411
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 228/451 (50%), Gaps = 75/451 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQ-PTT------- 110
E K+ E +FVVVM+TK K ++ A+T + PA +S+ P Q PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 111 ---TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQA 162
S TPA T A + P SA PA PA P + S+ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD----- 232
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
R S P T A Q + A + A+ P G P L+FLRN
Sbjct: 233 --RESQAVVDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----------LEFLRN 280
Query: 283 SQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHL 342
QFQ +R ++Q NP +L +LQ++G++NP L
Sbjct: 281 QP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQL 312
Query: 343 MRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERL 393
++ I +HQ F++++NEPV+ + + S + VTP+E+EAIERL
Sbjct: 313 LQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERL 372
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 373 KALGFPEGLVIQAYFACEKNENLAANFLLQQ 403
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 159/267 (59%), Gaps = 42/267 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ 263
T + P A SG PN PLDLFPQ
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 225/459 (49%), Gaps = 95/459 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT----------- 109
E K+ E +FVVVM+TK K + + APA Q+ S+A T + T
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPA 114
Query: 110 --------TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----S 156
S TPAPT A + P SA PA P P + S+ S
Sbjct: 115 PASAPTPTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P AS G + A +SG G P
Sbjct: 232 DRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP------ 274
Query: 273 GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 275 ----LEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALL 302
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---------VTVT 383
Q++G++NP L++ I +HQ F++++NEPV+ G G + A + VT
Sbjct: 303 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVT 362
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 363 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 232/429 (54%), Gaps = 66/429 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G +++ + Q LI+ GK+L D + L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K + + + +AAPA +++AP + ++TS PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKKAPTASQPSTAAPA----PSTTAPAAQSDSSSTSDKPA---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS + P + P+ A + + + +++ +A SNLV GS+ +A V +++
Sbjct: 113 -EQSSTDDKPEESQPSTTEASSTSVGRS----GDAANLISEAVSNLVTGSSYDAMVNEMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RA+EYL +GIP + ++G A PPA
Sbjct: 168 LMG---YEREQVVAALRASFNNPDRAMEYLLTGIPSRN-----QGNASGRDAVAPPA--- 216
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ PA PA + AN + P+ G G L FLRN
Sbjct: 217 SGTPAVPAGNASAPAN-----TRSSPSAG---GGNPLSFLRNQP---------------- 252
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ +R ++Q N +L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 253 ------------QFQVMRQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFIQMLNEP 300
Query: 361 V-----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
V GG G + M + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 301 VPEPVPGGGSSGAGGGGGNQM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 359
Query: 416 LAANYLLDH 424
LAAN+LL
Sbjct: 360 LAANFLLQQ 368
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 157/454 (34%), Positives = 228/454 (50%), Gaps = 85/454 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV--------------SSSGASTVSAAPANQAQTTSSAPPTST 106
E K+ E +FVVVM+TK K +++ + S APA AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPA-VAQVPTPTPALAP 119
Query: 107 QPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQ 161
PT S TPA T +S P SA PA PA P + S+ S+++
Sbjct: 120 TPTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQ 217
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P A+ G + A +SG G P L
Sbjct: 237 AVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------L 275
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 276 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 307
Query: 338 QNPHLMRLIQEHQTDFLRLINEPV---------EGGEGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV GG + + S + VTP+E+E
Sbjct: 308 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKE 367
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 368 AIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 228/456 (50%), Gaps = 90/456 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-------------------TTSSA 101
E K+ E +FVVVM+TK K V+ APA Q + A
Sbjct: 61 EYKIDEKNFVVVMVTKPKA-------VTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPA 113
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSV 155
P + P+ S TPAPT A + P SA P PA PA P A +P SS
Sbjct: 114 PALAPTPSPASITPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSR 172
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 173 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
G+ +Q P A + + P++ ++ G
Sbjct: 230 -----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGH 272
Query: 276 TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQEL 335
L+FLRN QFQ +R ++Q NP +L +LQ++
Sbjct: 273 PLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQI 304
Query: 336 GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---------VTVTPEE 386
G++NP L++ I +HQ F++++NEPV+ G G + + VTP+E
Sbjct: 305 GRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIGEAGSGHMNYIQVTPQE 364
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 365 KEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 400
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 127/212 (59%), Positives = 145/212 (68%), Gaps = 16/212 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SS SAAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSS------SAAPAK--VTANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYS
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYS 196
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 169/430 (39%), Positives = 226/430 (52%), Gaps = 63/430 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV KT++G FE+E+ DK+ +VK+ IE VQG+D +PA+ Q++I+QGKVLKD TTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +K++ V A +A + P + T + A A
Sbjct: 63 E---------------NKITHENFVVVMIQRARKAASPKKEEPAAPTTTAPAPAEAAPTA 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP P AA A A APA A ++S S L+ G+ LE+T+ I+
Sbjct: 108 PAAEVPAQQPRAAAVPAAAAAAPAAGAAAGDLNSNS---------LLMGTQLESTIAGIV 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V+RA+RAA+NNP+RAVEYL +GIP P A ++ A
Sbjct: 159 EMG---FDREEVVRAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAA 215
Query: 241 AQQPAAPAPTSGPNANPLDLF--PQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
P SGPNA PLD+F G+ AG LDFLR++
Sbjct: 216 GTPATGGGPASGPNAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNP-------------- 261
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
QF ALR +VQ+NP ILQPMLQELGKQNP L+ LI +Q +FLR+IN
Sbjct: 262 --------------QFIALRQIVQSNPMILQPMLQELGKQNPELLTLINANQQEFLRIIN 307
Query: 359 EP--VEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
EP V V L +A+P AV +T EE+ AI+RLE +GFDR +E F C ++
Sbjct: 308 EPPSVIMFWLTVRLLLFAALPPGAVAVHLTEEEQAAIQRLETLGFDRNRCIEAFLLCERD 367
Query: 414 EELAANYLLD 423
E LAAN+L D
Sbjct: 368 ETLAANFLFD 377
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 224/443 (50%), Gaps = 78/443 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA---------NQAQTTSSAPPTSTQPTTT 111
E K+ E FVVVM+TK K SS + PA ++ PT+T T
Sbjct: 61 EYKIDEEKFVVVMITKPK-SSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTETVP 119
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
+ T + +S + + +P+ + A SS+ DV A S LV G
Sbjct: 120 TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 230
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNNP 228
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
Q A T + QPAAPAPTS N L+FLRN
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP------ 261
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ
Sbjct: 262 ----------------------QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQ 299
Query: 351 TDFLRLINEPVEGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVF 407
+F++++NEP++ V + SA Q + VTP+E+EAIERL+A+GF LV++ +
Sbjct: 300 GNFIQMLNEPIQDIANEVA--VTSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAY 357
Query: 408 FACNKNEELAANYLLDHMHEFED 430
FAC KNE LAAN+LL F+D
Sbjct: 358 FACEKNENLAANFLLQ--QNFDD 378
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 219/449 (48%), Gaps = 83/449 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K A+ P+N T S T PAP A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----AAAGVTQPSNATSTVGSTTAAPTAVAAPIPVPAPVPA 115
Query: 121 PPQSVPESAPPPAAPAPAPAP----------------APAPAPAPAPVSSVSDVYGQAAS 164
P P PAP P +P+ + +S S+++ A S
Sbjct: 116 PVPPPPAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSIDSTTGDTSRSNLFEDAIS 175
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--------- 223
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
QA P Q P T ++ + +P S+ G L+FLRN
Sbjct: 224 ---GDNQAVADPPQ--------PPSTGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQP 272
Query: 285 QVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMR 344
QFQ +R ++Q NP +L +LQ++G++NP L++
Sbjct: 273 ----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQ 304
Query: 345 LIQEHQTDFLRLINEPV-----------EGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
I +HQ F+ ++NEPV +G +G +A + VTP+E+EAIERL
Sbjct: 305 QISQHQEHFIHMLNEPVLESRQGLSGSDDGASTGGIGDAGNAHMNYIQVTPQEKEAIERL 364
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLL 422
+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 365 KALGFPEGLVIQAYFACEKNENLAANFLL 393
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 236/454 (51%), Gaps = 82/454 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TTS+ ++ + TP+P +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 121 PP---------------QSVPESAPPPAAPAPAPAPAP---APAPAPAPV--SSVSDVYG 160
P + +P SAP PA P AP +P + + + SS S+++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKPAEKPVEAPIGVSPTSSDSTLGDSSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDREN 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q+ V P AS G + A A A T+ +P
Sbjct: 238 QSVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHP------------------- 278
Query: 277 LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELG 336
L+FLRN QFQ +R ++Q NP +L +LQ++G
Sbjct: 279 LEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIG 310
Query: 337 KQNPHLMRLIQEHQTDFLRLINEPV--------EGGEGNVLGQLASAMPQAVTVTPEERE 388
++NP L++ I +HQ F++++NEPV GG + + S + VTP+E+E
Sbjct: 311 RENPQLLQQISQHQEHFIQMLNEPVQESGGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 370
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 371 AIERLKALGFPEGLVIQAYFACEKNENLAANFLL 404
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 224/443 (50%), Gaps = 91/443 (20%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 160
Query: 82 S---GASTVSAAPANQAQTTSSA--------PPTSTQPTTT--SQTPAPTVAPPQSVPES 128
+ + S PA A ++S+A P ++ PT+T S TPA T + P S
Sbjct: 161 TPVPATTQQSNTPATTAVSSSTATVVAQAPTPTPASAPTSTPASTTPASTTVSSEPAPAS 220
Query: 129 APPPAAPAPAPAPAP---APAPAPAP--VSSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
A P PA PA +P +PAPA + SS S+++ A S LV G + E V +I+ MG
Sbjct: 221 AAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 280
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP Q V P PP
Sbjct: 281 ---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------------PPQAV 325
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
P +PA + S+AG L+FLRN
Sbjct: 326 STGTPQSPAVAAAAATT--------TATTTSSAGGHPLEFLRNQP--------------- 362
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 363 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 409
Query: 360 PVEGG------------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 401
PV+ G + + S + VTP+E+EAIERL+A+GF
Sbjct: 410 PVQEAGGQGGGGGGGGGGGGGGSGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 469
Query: 402 LVLEVFFACNKNEELAANYLLDH 424
LV++ +FAC KNE LAAN+LL
Sbjct: 470 LVIQAYFACEKNENLAANFLLQQ 492
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 160/444 (36%), Positives = 224/444 (50%), Gaps = 65/444 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IEV P + V K+ IE +G D YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---STQPTTTSQTPAP 117
E ++ E FVV+M+TK K S A+ V+ P + S+ P+ TQP +Q PA
Sbjct: 60 EYEIDEKKFVVIMVTKPK-QSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKPAE 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T P +S PA +PA + A P P ++ + AAS LV G E VQ
Sbjct: 119 T---PSGTSKS------PAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQ 169
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-- 235
QI++MG ++R V RALRA++NNP+RAVEYL +GIP P A S G +
Sbjct: 170 QIMEMG---YERPQVERALRASFNNPDRAVEYLLTGIPPSQQDP--AEESHGATEESEEA 224
Query: 236 ----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFY 291
P+ T P + T+G PL+ L G N L FLR Q
Sbjct: 225 PRSVPSDTAMSSPQSQHGTTGGGGGPLEA---ALAAEGGNP-EDPLAFLRFQPQ------ 274
Query: 292 LFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351
FQ +R ++Q NPQ+L +LQ+LG+ NP L++LI +Q
Sbjct: 275 ----------------------FQQMRQVIQQNPQLLNAVLQQLGQTNPQLLQLISRNQE 312
Query: 352 DFLRLINEPV--EGGEGNVLGQLASAMPQAVT------VTPEEREAIERLEAMGFDRALV 403
F+R++NEP GG A VTP+++EAIERL+A+GF LV
Sbjct: 313 AFVRMLNEPSPPPGGASQGGAPGGLGSGGAPIEVNYGQVTPQDKEAIERLKALGFPEYLV 372
Query: 404 LEVFFACNKNEELAANYLLDHMHE 427
++ +FAC+KNE LAAN+LL ++
Sbjct: 373 VQAYFACDKNENLAANFLLSQNYD 396
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 226/456 (49%), Gaps = 90/456 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K + G+ EVK +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 232 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 270
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 271 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 302
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 303 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 362
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 363 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 398
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/457 (33%), Positives = 228/457 (49%), Gaps = 121/457 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKT+ G E+E +P + ++D+K IE S P ++ +IH G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS-APPTSTQPTTTSQTPAPTV 119
E VA+ + V+M++K K PA + Q +S AP + +P+T + P
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQPSSEPAPSAAPKPSTPATEAPPAA 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q + PAP PA + AP+ AP S+ S Y +AS L+ G +LEATV QI
Sbjct: 107 PAVQP--------SQPAPPSTPAQS-APSTAPASTTS--YDASASALLTGESLEATVMQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----------------------- 216
++MG ++RE V++ALRAA+NNP+RAVEYL +GIPE
Sbjct: 156 MEMG---FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSG 212
Query: 217 ---QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
++ P +S Q+Q QQ + T GP
Sbjct: 213 SGGGVSIDPEVLSS---------LQSQMQQHSESGGTGGP-------------------- 243
Query: 274 AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQ 333
LDFLR+ Q +M LR ++QA PQ LQP+L+
Sbjct: 244 ---LDFLRSDPQFAM----------------------------LRGIIQARPQFLQPLLE 272
Query: 334 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ------AVTVTPEER 387
++G+Q+P ++R IQE+Q +F+RLINEPV+ + + Q + + +T EE
Sbjct: 273 QIGQQHPEVLRAIQENQDEFVRLINEPVDQTQFSQAMQALEGRGEDEEGAVQIQLTQEEG 332
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EA+ RLEA+GF+R L LE + AC+KNEE+AANYL ++
Sbjct: 333 EALARLEALGFNRQLALEAYLACDKNEEMAANYLFEN 369
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 225/459 (49%), Gaps = 95/459 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-------------------TTSSA 101
E K+ E +FVVVM+TK K + + APA Q + A
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPA 114
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----S 156
P + PT S TPA T A + P SA PA PA P + S+ S
Sbjct: 115 PALAPTPTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P AS G + A +SG G P
Sbjct: 232 DRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP------ 274
Query: 273 GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 275 ----LEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALL 302
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPV---------EGGEGNVLGQLASAMPQAVTVT 383
Q++G++NP L++ I +HQ F++++NEPV GG + + S + VT
Sbjct: 303 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGGSGGIAEAGSGHMNYIQVT 362
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 363 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 218/434 (50%), Gaps = 84/434 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 262
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 263 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 309
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 310 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 369
Query: 411 NKNEELAANYLLDH 424
KNE LAAN+LL
Sbjct: 370 EKNENLAANFLLQQ 383
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 147/424 (34%), Positives = 215/424 (50%), Gaps = 62/424 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K S++ S P Q + S + T + P+ A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + P P+ A PA S S A+S LV G+ EA + +I+
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPASSSDGSQGLD-ASSALVTGAEYEAMLTEII 179
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPP Q
Sbjct: 180 SMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPVQA- 224
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
AP PT P + P G L FLRN
Sbjct: 225 ----PAPLPTESPASPP--------------EGENPLAFLRNQP---------------- 250
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QF +R +Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP
Sbjct: 251 ------------QFLHMRQAIQQNPNLLSALLQQLGQENPQLLQQINQHQERFIQMLNEP 298
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
V G + + VTP+E+EAIERL+A+GF ALV++ +FAC KNE LAAN+
Sbjct: 299 VGEGGEMGAAGDEGSSVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANF 358
Query: 421 LLDH 424
LL+
Sbjct: 359 LLNQ 362
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 148/428 (34%), Positives = 214/428 (50%), Gaps = 77/428 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTT-----------SQTPAPTVAPPQSVPESA 129
A+T + PA +SS P Q S TPAPT A + P SA
Sbjct: 61 PAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASA 120
Query: 130 PPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P PA PA P A +P SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 179
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 180 ---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRDSQAVVDT 219
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVF 303
P A + + P++ +N G L+FLRN
Sbjct: 220 PPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQP------------------- 260
Query: 304 WYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 363
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 261 ---------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 311
Query: 364 G---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 312 AGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNE 371
Query: 415 ELAANYLL 422
LAAN+LL
Sbjct: 372 NLAANFLL 379
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 229/477 (48%), Gaps = 113/477 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G+D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSA-APA--------------------------- 92
E K+ E +FVVVM+TK K GA+ SA +PA
Sbjct: 61 EYKIDEKNFVVVMVTKPK----GAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQNA 116
Query: 93 ------NQAQTTSSAP--PTSTQPTTTSQTPAPTVAPPQSVPE--SAPPPAAPAPAPAPA 142
T SAP PTS TTT AP + PE + PP +P+
Sbjct: 117 PIPLPVPLPLPTVSAPAAPTSELSTTT--------APKEEKPEEKTVSPPETESPSSTEC 168
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P + P ++ A S LV G + E V +I+ MG ++RE VI ALRA++NN
Sbjct: 169 SLPTDSSRP-----SLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNN 220
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P+RAVEYL GIP + + GQA P + + P P P + A
Sbjct: 221 PDRAVEYLLMGIP----------SDSEGQAVAEPPEALSSTPTEPLPVAAGAAA------ 264
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQ 322
+ G LDFL+N QFQ +R ++Q
Sbjct: 265 TTTVPSTPSTGGNPLDFLQNQP----------------------------QFQQMRQIIQ 296
Query: 323 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---------EGGEGNVLGQLA 373
NP +L +LQ++G++NP L++ I +HQ F++++N+PV GG V +
Sbjct: 297 QNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPVPESGGQGGGGGGGRGVAAEAG 356
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 357 SGQMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 411
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 155/434 (35%), Positives = 216/434 (49%), Gaps = 84/434 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ T S T Q APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 262
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 263 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 309
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 310 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 369
Query: 411 NKNEELAANYLLDH 424
KNE LAAN+LL
Sbjct: 370 EKNENLAANFLLQQ 383
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 227/487 (46%), Gaps = 116/487 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-------------------------------VSDVKKN 29
M+V +KTL+ F+I++ PE+ V +K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVS- 88
IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++ A +
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 89 -------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP 135
APA AQT + P + PT S TPA T A + P SA P
Sbjct: 121 QSNSATTTTVSSSTAPAV-AQTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 136 APAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A PA P + S+ S+++ A S LV G + E V +I+ MG ++RE
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 191 TVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAA 246
VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATT 296
Query: 247 PAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYS 306
+SG G P L+FLRN
Sbjct: 297 TTTSSG-----------GHP----------LEFLRNQP---------------------- 313
Query: 307 YFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 364
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 314 ------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 367
Query: 365 -------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LA
Sbjct: 368 QGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 427
Query: 418 ANYLLDH 424
AN+LL
Sbjct: 428 ANFLLQQ 434
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 218/434 (50%), Gaps = 84/434 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 261
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 262 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 308
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 309 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 368
Query: 411 NKNEELAANYLLDH 424
KNE LAAN+LL
Sbjct: 369 EKNENLAANFLLQQ 382
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 225/463 (48%), Gaps = 105/463 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I+V D V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ------------------------ 96
E K+ E +FVVVM+TK K + + APA Q
Sbjct: 58 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPA 111
Query: 97 --TTSSAPPTSTQP--TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
++ P S P TT S PAP A Q P P A P A +PA +
Sbjct: 112 PALAPTSAPASIAPAVTTVSSEPAPASAAQQEKPSEKP---AETPV-ASSPASTDNTSGD 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 168 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 224
Query: 213 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
GIP Q V P AS G AP S +A
Sbjct: 225 GIPGDRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTAATT 264
Query: 269 GSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQIL 328
+++G L+FLRN QFQ +R ++Q NP +L
Sbjct: 265 TTSSGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLL 296
Query: 329 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---------EGGEGNVLGQLASAMPQA 379
+LQ++G++NP L++ I +HQ F++++NEPV GG + + S
Sbjct: 297 PALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGGSGGIAEAGSGHMNY 356
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 357 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 399
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 217/434 (50%), Gaps = 84/434 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P S + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 262
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 263 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 309
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 310 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 369
Query: 411 NKNEELAANYLLDH 424
KNE LAAN+LL
Sbjct: 370 EKNENLAANFLLQQ 383
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 217/434 (50%), Gaps = 84/434 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 262
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 263 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 309
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 310 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 369
Query: 411 NKNEELAANYLLDH 424
K E LAAN+LL
Sbjct: 370 EKRENLAANFLLQQ 383
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 147/442 (33%), Positives = 221/442 (50%), Gaps = 71/442 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ G +L DV L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +++ +FVVVM TK K + + AA + ++APP +T S+ P
Sbjct: 61 EYNISDKNFVVVMATKPKTAPAATQPSPAA----SGPCTAAPPAPGACSTVSEVPTQQTT 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E P AAPA P + P A ++ +A SNLV G + E+ V +I+
Sbjct: 117 KEDNAEEKPPSTAAPASTPEGGGSEVPTNA------NLIDEAVSNLVTGPSYESMVNEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE V+ ALRA++NNP+RAVEYL +GIP + GQA A+
Sbjct: 171 LMG---YDREQVVVALRASFNNPDRAVEYLLTGIPGRDQ----------GQAAGTTAEAT 217
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ A AP G A P G GS+ GA ++ L
Sbjct: 218 SAGVAPAAPLGGLRA------PTG---TGSSTGAERVNPL-------------------- 248
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
S+ R QFQ +R ++Q N +L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 249 -----SFLRNQPQFQQMRQLIQQNASLLPALLQEIGRENPELLQEISRHQEQFIQMLNEP 303
Query: 361 -----------VEGGEGNVLGQLASAMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
+ G + P + + VT +E+E+IERL+ +GF LV++ FF
Sbjct: 304 NPEPVPGGGGGAAATAAGMAGTASGENPMRYIHVTAQEKESIERLKELGFPEGLVIQAFF 363
Query: 409 ACNKNEELAANYLLDHMHEFED 430
AC KNE +AAN+LL F+D
Sbjct: 364 ACEKNENMAANFLLQ--QNFDD 383
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 213/431 (49%), Gaps = 81/431 (18%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+T + A Q+ ++ +S+ T Q PAP V P P S P A + PAP
Sbjct: 58 AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAPT 117
Query: 143 -------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDM 182
PA PA PV SS S+++ A S LV G + E V +I+ M
Sbjct: 118 SVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 177
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 178 G---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRESQAVVD 217
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
P A + + P++ ++ G L+FLRN
Sbjct: 218 TPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQP------------------ 259
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 260 ----------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 309
Query: 363 GG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KN
Sbjct: 310 EAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKN 369
Query: 414 EELAANYLLDH 424
E LAAN+LL
Sbjct: 370 ENLAANFLLQQ 380
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 217/434 (50%), Gaps = 84/434 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
A PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQKKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 261
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 262 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 308
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 309 PVQEAGGQGGGGGGGSGGIAEAGSGPMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 368
Query: 411 NKNEELAANYLLDH 424
KNE LAAN+LL
Sbjct: 369 EKNENLAANFLLQQ 382
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 152/439 (34%), Positives = 213/439 (48%), Gaps = 95/439 (21%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPT-------------------TTSQTPAPTVAPPQ 123
+ + APA Q+ S+A T + T S TPAPT A +
Sbjct: 57 --AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSE 114
Query: 124 SVPESAPPPAAPAPAP-----APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P SA PA P A PA + + SS S+++ A S LV G + E V +
Sbjct: 115 PAPASAAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 234
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 175 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 231
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
A +SG G P L+FLRN
Sbjct: 232 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQP---------- 260
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+
Sbjct: 261 ------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFI 302
Query: 355 RLINEPVEGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLE 405
+++NEPV+ G G + A + VTP+E+EAIERL+A+GF LV++
Sbjct: 303 QMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQ 362
Query: 406 VFFACNKNEELAANYLLDH 424
+FAC KNE LAAN+LL
Sbjct: 363 AYFACEKNENLAANFLLQQ 381
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 229/474 (48%), Gaps = 107/474 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ KTL+G F++E +D V++VK+ + VQG + S + LI GKVL + L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSCR-LIFSGKVLSNENEKL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQ-PTTTSQTPA 116
++ V E+SF+VVM K + +S+ + A +A+TT TS S T A
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
T+ A + P +S+ V GS E TV
Sbjct: 120 VTINNNDRDETKATSSSQPTSG-----------------------TSSDFVIGSQYETTV 156
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAG 229
+ +++MG ++ + V RALRAA++NP+RAVEYL++GIPE QT++P G
Sbjct: 157 KNLMEMG---FEEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVG 213
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPN----ANPLDLF-PQ--------GLPNMGSNAGAGT 276
TQ + + +S N + P ++F PQ G + GS G+
Sbjct: 214 H---TDRTATQENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGS---TGS 267
Query: 277 LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELG 336
LDFL + QF +R ++QANP+ILQPMLQEL
Sbjct: 268 LDFLTR----------------------------IPQFNVMRRLIQANPRILQPMLQELA 299
Query: 337 KQNPHLMRLIQEHQTDFLRLINEPVEGGEG----------NVLGQLA--------SAMPQ 378
+ NP L+ LI ++Q +F+RL+NEP E EG N + L+ S+
Sbjct: 300 QANPSLLDLIHQNQQEFVRLLNEPTEDSEGLSDEQVQELLNSISGLSEGGNTGEESSGVS 359
Query: 379 AVTVTPEEREAIERLEA----MGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
+ V+PEERE IERLE+ MG RA +LE + AC++NEELAANY+L ++ E+
Sbjct: 360 YIQVSPEEREQIERLESLVGPMGVSRAAILEAWLACDRNEELAANYILSNLEEY 413
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 151/439 (34%), Positives = 230/439 (52%), Gaps = 67/439 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
P + P S P APA PVSS S +++ +A S LV G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSALVTGQSYENMV 165
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 166 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 222
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFAS 295
A A PA S P++ P S+A GA L+FLRN
Sbjct: 223 ASAPA--PAISTGLSSPSSTA--------PAQPSSASGANPLEFLRNQP----------- 261
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QF +R ++Q NP +L +LQ++G++NP L++ I HQ F++
Sbjct: 262 -----------------QFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQ 304
Query: 356 LINEPVEGGEGNVLGQLASAMPQA----VTVTPEEREAIERLEAMGFDRALVLEVFFACN 411
++NEPV+ + + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 305 MLNEPVQEAGQGGGAGGVAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 364
Query: 412 KNEELAANYLLDHMHEFED 430
KNE LAAN+LL F+D
Sbjct: 365 KNENLAANFLLQ--QNFDD 381
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 221/436 (50%), Gaps = 88/436 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T + APT P P SA A+P PAPA
Sbjct: 62 PAPATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPA 119
Query: 141 PA-----PAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDM 182
A PA PA PV+S S+++ A S LV G + E V +I+ M
Sbjct: 120 SATKQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 179
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPA 237
G ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPPQAASTGAPQSSAVAA 236
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+SG G P L+FLRN
Sbjct: 237 AAATTTATTTTTSSG-----------GHP----------LEFLRNQP------------- 262
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 263 ---------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 307
Query: 358 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 308 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 367
Query: 409 ACNKNEELAANYLLDH 424
AC KNE LAAN+LL
Sbjct: 368 ACEKNENLAANFLLQQ 383
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 228/462 (49%), Gaps = 76/462 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S ++ A + + + T ++ AP
Sbjct: 61 EYKIDEKNFVVVMVTKPKGASCSSAPSPATSQPASAASPAPASPPLTYTPIARQNAPIPL 120
Query: 121 P-PQSVPESAPPPAAPAPAP----------------APAPAPAPAPAPVSSVSD-----V 158
P P S+P + P PAAP P +P +P+ S +D +
Sbjct: 121 PVPFSLP-TVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDSSRPSI 179
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
+ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 FEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--- 233
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-- 276
+ QA P + + P P + P PL + + T
Sbjct: 234 -------SDREDQAVAEPPEALSSTPTLTPPLTQPLTQPLPAAAGAAATTTTPSTPSTGG 286
Query: 277 --LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQE 334
LDFL+N QFQ +R ++Q NP +L +LQ+
Sbjct: 287 NPLDFLQNQP----------------------------QFQQMRQIIQQNPSLLPALLQQ 318
Query: 335 LGKQNPHLMRLIQEHQTDFLRLINEPV------EGGEGNVLGQLASAMPQAVTVTPEERE 388
+G++NP L++ I +HQ F++++N+PV GG V + S + VTP+E+E
Sbjct: 319 IGRENPSLLQQISQHQEQFIQMLNDPVPEGGREGGGGRGVAAEAGSGHMNYIQVTPQEKE 378
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
AIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 379 AIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 418
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 156/431 (36%), Positives = 231/431 (53%), Gaps = 78/431 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ + +VS AP Q + S T+T+
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGS--------TSTAAPTTNPTP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG-QAASNLVAGSNLEATVQQI 179
P P + P P+ A + A A P P SS G A+S LV G+ EA + +I
Sbjct: 113 APAPAPAAVPIPSGEAKEESSAVATEPQ-QPASSSGGSQGLDASSTLVTGAEYEAMLTEI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPPAQ
Sbjct: 172 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPAQ- 216
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
APTSG P +P G L FLR
Sbjct: 217 --------APTSGTTEAP------SVPE-----GENPLAFLRTQP--------------- 242
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QF +R +Q NP +L +LQ+LG++NP L++ I +HQ F++++NE
Sbjct: 243 -------------QFLHMRQAIQQNPALLPALLQQLGRENPQLLQQISQHQELFIQMLNE 289
Query: 360 PV-EGGEGNVLGQLASAMPQA-----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
PV EGG+ +G++ +A + + VTP+E+EAIERL+A+GF ALV++ +FAC KN
Sbjct: 290 PVGEGGDAPEVGEMGAAGEEGAPVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKN 349
Query: 414 EELAANYLLDH 424
E LAAN+LL+
Sbjct: 350 ENLAANFLLNQ 360
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 157/442 (35%), Positives = 229/442 (51%), Gaps = 101/442 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P++ V +K+ IE +G + +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K T S AP + + + A PT+ +PT +S A TV+P
Sbjct: 65 KIDEKNFVVVMVTKNK-------TGSGAPVS---SPTDAAPTA-EPTPSSGPTAATVSPL 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQ---AASNLVAGSNLEATVQ 177
Q+ P S P P + +P + V SV S G+ AAS LV GS E +
Sbjct: 114 QASPSSEEKP------PEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLT 167
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G + A
Sbjct: 168 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP--------------GSSEPERA 210
Query: 238 QTQAQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
Q QP PAP G L+FLR+
Sbjct: 211 PIQESQPQDQPAP----------------------EGENPLEFLRDQP------------ 236
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQ +R ++Q NP +L +LQ+LG++NP L++ I +HQ F+++
Sbjct: 237 ----------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQM 280
Query: 357 INEPVE--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
+NEP+ GE +G+ A M + VTP+E+EAIERL+A+GF +LV++ +F
Sbjct: 281 LNEPLGEMADIADIEGEMGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYF 339
Query: 409 ACNKNEELAANYLLDHMHEFED 430
AC KNE LAAN+LL F+D
Sbjct: 340 ACEKNENLAANFLLS--QNFDD 359
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 205/423 (48%), Gaps = 79/423 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P V
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSP---VT 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + + P AP SS + G S+LV G N E V++++
Sbjct: 109 EANEAPSSKPDANSQSNLPTVTTAP-------SSATSTLGFGESSLVTGENFERVVKELM 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 162 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 208
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
++ P P T P G ++GS L ASL
Sbjct: 209 ESVSPEGPGDTDTP----------GSESLGSEDPIAAL----------------ASLP-- 240
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R +VQANP++L ++Q++G N L RLIQE++ FL IN
Sbjct: 241 -------------QFQQMRALVQANPELLPQLIQQIGNDNADLFRLIQENEQAFLEFINT 287
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PV G + S +T+T EER A++RL+A+GF LV++ ++AC KNE+ AAN
Sbjct: 288 PVTG-----TTRPGSQRQTVLTMTAEERAAVDRLKALGFPEELVIQAYYACEKNEDAAAN 342
Query: 420 YLL 422
+LL
Sbjct: 343 FLL 345
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 213/429 (49%), Gaps = 75/429 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQ-PTT----------TSQTPAPTVAPPQSVPESA 129
A+T + PA +S+ P Q PT+ S TPA T A + P SA
Sbjct: 62 PAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASA 121
Query: 130 PPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA P + S+ S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP R S P T A Q
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGD-------RESQAVVDTPPAVSTGAPQS 231
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFW 304
+ A + A+ P G P L+FLRN
Sbjct: 232 SVAAAAATTTASTTTASPGGHP----------LEFLRNQP-------------------- 261
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 364
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 262 --------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 313
Query: 365 ---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 314 GGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 373
Query: 416 LAANYLLDH 424
LAAN+LL
Sbjct: 374 LAANFLLQQ 382
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 217/444 (48%), Gaps = 109/444 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P + V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K A PA +S PP + P + A T+ P
Sbjct: 65 KIDEKNFVVVMVTKAK----------AGPA------TSVPPEPSAPAS-----ANTLEPS 103
Query: 123 QSVPESAPPPAAPAPAPAP--------------APAPAPAPAPVSSVSDVYGQAASNLVA 168
P + A P P PAP P P P S S AAS LV
Sbjct: 104 TPTPPAPTIVAMPLPPPAPNEEKKATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVT 163
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL GIP S
Sbjct: 164 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP----------GSP 210
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSM 288
++G P Q ++Q P PAP G N L+FLR+
Sbjct: 211 EPESG--PVQ-ESQAPEQPAPEGGENP---------------------LEFLRDQP---- 242
Query: 289 MFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 348
QFQ +R ++Q NP +L +LQ+LG++NP L++ I
Sbjct: 243 ------------------------QFQNMRQVIQQNPSLLPALLQQLGQENPQLLQQISR 278
Query: 349 HQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDR 400
HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF
Sbjct: 279 HQEQFIQMLNEPTGELADMSDVEGEV-GAIGEESPQMNYIQVTPQEKEAIERLKALGFPE 337
Query: 401 ALVLEVFFACNKNEELAANYLLDH 424
+LV++ +FAC KNE LAAN+LL
Sbjct: 338 SLVIQAYFACEKNENLAANFLLSQ 361
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 221/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + APA +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA + AG L+FLR+
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQP------------------ 238
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 289 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 347
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 348 NLAANFLLS--QNFDD 361
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 176/516 (34%), Positives = 245/516 (47%), Gaps = 123/516 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F IE+ PE V +K+ IE +G D +P+ Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSK-----------------------------------VSSSGAS 85
E K+ E +FVVVM+TK K V S+
Sbjct: 62 EYKIDEKNFVVVMVTKPKPTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVPSTPTH 121
Query: 86 TVSAA-PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAP------- 137
T SAA PA+Q+ S APP+ + TT + A S ESAP + AP
Sbjct: 122 TTSAAVPASQSVPPSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGSTAPVASSTAP 181
Query: 138 -----APAPAPAPAPAPA-------------------PV----SSVSDVYG---QAASNL 166
APA P+ +P PA PV SS+ D G +AAS L
Sbjct: 182 EAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSLVDELGLLEEAASIL 241
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V G E V +I+ +G ++RE V+ ALRA+YNNP+RAVEYL GIP + + +
Sbjct: 242 VTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLMGIPARASDLHNPQP 298
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAGAGT------L 277
S NP + + P P N +++F QG P GS AG G+ L
Sbjct: 299 SRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQPVTAGGGSGSIGNPL 356
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ+LG+
Sbjct: 357 EFLRNQP----------------------------QFQQMRQIIQQNPALLPALLQQLGR 388
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA----MPQAVTVTPEEREAIERL 393
NP L++ I EHQ F++++NEP G G G+ A A + VTP+E+EAIERL
Sbjct: 389 DNPQLLQQITEHQERFVQMLNEPQAGDTG---GEDADAHGSPHTNYIQVTPQEKEAIERL 445
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
+A+GF LV++ +FAC KNE LAAN+LL + E
Sbjct: 446 KALGFPEGLVIQAYFACEKNENLAANFLLQQTWDDE 481
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 153/468 (32%), Positives = 227/468 (48%), Gaps = 91/468 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP- 117
E K+ E +FVVVM+TK K SS + ++ PA+ A ++PP + P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 118 ---------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV-SSV 155
T AP + PE +P +P+ P SS
Sbjct: 121 PVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEE----KTDSPQETVSPSSTECSLPTDSSR 176
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 PSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 233
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
+ GQA P QT + P P P + A + G
Sbjct: 234 ----------SDREGQAVAEPPQTLSSTPTQPLPAAAGAAA------TTTTPSTPSTGGN 277
Query: 276 TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQEL 335
LDFL+N QFQ +R ++Q NP +L +LQ++
Sbjct: 278 PLDFLQNQP----------------------------QFQQMRQIIQQNPSLLPALLQQI 309
Query: 336 GKQNPHLMRLIQEHQTDFLRLINEPV-------------EGGEGNVLGQLASAMPQAVTV 382
G++NP L++ I +HQ F++++N+PV GG + + S + V
Sbjct: 310 GRENPSLLQQISQHQEQFIQMLNDPVPESGGQGGGGGGGGGGGRGIAAEAGSGHMNYIQV 369
Query: 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
TP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 370 TPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 415
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 210/464 (45%), Gaps = 148/464 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVK LKG FEI+V PED V DVKKNIETV G YPA++Q+LIH+GKVLKD TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N V+E S + V+ K K +S+G ST APA+ +A P ST
Sbjct: 61 ANNVSEKSVIGVI--KKKPASTGTST---APASLTALVHAAHPYST-------------- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AA P PA AASN S E+ +QQIL
Sbjct: 102 ------------AAETPVTPTEPA---------------WDAASNGNYESISESNIQQIL 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL AY++ +A+EY+Y GIP ++ + + Q
Sbjct: 135 EMVRGAWSREAVAYALCLAYDDLNKALEYIYFGIPVKS-------------EDHYTTEEQ 181
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
Q+PA DL +LD LR++ + +
Sbjct: 182 TQEPAEA-----------DL-------------EWSLDSLRHTPEFEHL----------- 206
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI--- 357
R +VQ++P +L L L KQNP RLIQ+++ DFLRL+
Sbjct: 207 -----------------RPLVQSDPSLLMDFLLMLKKQNPPFFRLIQDNKADFLRLLLEQ 249
Query: 358 -NEPVEGGE-GNVLG-------------------------------QLASAMPQAVTV-T 383
EP GG+ GN +G Q+ + V V T
Sbjct: 250 PQEPNNGGDSGNQVGDSEETQVAQLPKELQADQTNEPNNGGGDGGNQVGESKEAKVEVAT 309
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
PE+ E I+RLEA+GF+R +FACN+N ++AAN+LL + HE
Sbjct: 310 PEDYELIKRLEALGFERGDAAVAYFACNRNLQVAANHLLGYKHE 353
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 220/436 (50%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 220/436 (50%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 223/447 (49%), Gaps = 70/447 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ + V +K+ IE +G D +P + Q LI+ GK+L D T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E K+ E +FVVVM+TK K +++ + T + + T +S P + + PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 119 ------VAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVS--------SVSDVYGQAA 163
+ ESAP A PA P PA +P S S S+++ A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD------ 231
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
R S G +PP Q + A S A S+ G L+FLRN
Sbjct: 232 -RESQG--MADPP-----QAASTAASPSSAVAAAAAATTTTTTTTTSSTGGHPLEFLRNQ 283
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
QFQ +R ++Q NP +L +LQ++G++NP L+
Sbjct: 284 P----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLL 315
Query: 344 RLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEA 395
+ I +HQ F++++NEPV+ G G + + S + VTP+E+EAIERL+A
Sbjct: 316 QQISQHQEHFIQMLNEPVQESGQGSGGSGSGGGVVEAGSRHMNYIQVTPQEKEAIERLKA 375
Query: 396 MGFDRALVLEVFFACNKNEELAANYLL 422
+GF LV++ +FAC KNE LAAN+LL
Sbjct: 376 LGFPEGLVIQAYFACEKNENLAANFLL 402
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 220/436 (50%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 70 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 126
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 127 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 178
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 179 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 225
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 226 QPATEA-----------------------AGENPLEFLRDQP------------------ 244
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 245 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 294
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 295 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 353
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 354 NLAANFLLS--QNFDD 367
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 211/429 (49%), Gaps = 87/429 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK-AAA 59
Query: 83 GASTVS----------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVP 126
GA+ S AP A P P + AP AP
Sbjct: 60 GATQQSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAP----E 115
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
E P P P A +P+ + +S S+++ A S LV G + E V +I+ MG
Sbjct: 116 EEKPAEKTPEPPAAISPSSTESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG--- 172
Query: 187 WDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP Q P AS G +Q+
Sbjct: 173 YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEPSQAASTGA--------SQSSTV 224
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFW 304
A T +P S+ G L+FLRN
Sbjct: 225 ATSVAT--------------IPMTTSSLGGHPLEFLRNQP-------------------- 250
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-VE- 362
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NEP VE
Sbjct: 251 --------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPAVES 302
Query: 363 ------GGEGNVLGQLASA---MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+G +G +A A + VTP+E+EAIERL+A+GF LV++ +FAC KN
Sbjct: 303 RQGLSGSDDGASIGGVAEAGNGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKN 362
Query: 414 EELAANYLL 422
E LAAN+LL
Sbjct: 363 ENLAANFLL 371
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 220/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA + AG L+FLR+
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQP------------------ 238
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 289 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 347
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 348 NLAANFLLS--QNFDD 361
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 220/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA + AG L+FLR+
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQP------------------ 238
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 289 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 347
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 348 NLAANFLLS--QNFDD 361
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 220/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 82 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 138
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 139 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 190
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 191 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 237
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA + AG L+FLR+
Sbjct: 238 QPA------------------------TEAGENPLEFLRDQP------------------ 255
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 256 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 305
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 306 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 364
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 365 NLAANFLLS--QNFDD 378
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 219/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA + G L+FLR+
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQP------------------ 238
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 289 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 347
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL FED
Sbjct: 348 NLAANFLLS--QNFED 361
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 154/443 (34%), Positives = 225/443 (50%), Gaps = 101/443 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
++QPA + AG L+FLR+
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQP----------- 238
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++
Sbjct: 239 -----------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQ 281
Query: 356 LINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVF 407
++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +
Sbjct: 282 MLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAY 340
Query: 408 FACNKNEELAANYLLDHMHEFED 430
FAC KNE LAAN+LL F+D
Sbjct: 341 FACEKNENLAANFLLS--QNFDD 361
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 219/436 (50%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 153/451 (33%), Positives = 222/451 (49%), Gaps = 117/451 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK K +G T+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKGK---AGQGTL-------------APPEIS----------PTAAPE 98
Query: 123 QSVP---ESAPPPAAPAPAPAPAPAPAPAPAPVSS------------VSDVYGQAASNLV 167
S P SAP + P+PA +P+ AP +S S AAS LV
Sbjct: 99 PSAPFQLTSAPGMSHPSPATRDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG +DRE V+ ALRA+YNNP RAVEYL +GIP S
Sbjct: 159 TGSEYETMLTEIMSMG---YDRERVVAALRASYNNPHRAVEYLLTGIP----------GS 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
+ G+ ++QPA + AG L+FLR+
Sbjct: 206 PEPEHGSIQESQASEQPA------------------------TEAGENPLEFLRDQP--- 238
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
QFQ++R ++Q NP +L +LQ+LG++NP L++ I
Sbjct: 239 -------------------------QFQSMRQVIQQNPALLPALLQQLGQENPQLLQQIS 273
Query: 348 EHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFD 399
HQ F++++NEP V EG V G + PQ + VTP+E+EAIERL+A+GF
Sbjct: 274 RHQEQFIQMLNEPPGELADVSDVEGEV-GAMGEDAPQMNYIQVTPQEKEAIERLKALGFP 332
Query: 400 RALVLEVFFACNKNEELAANYLLDHMHEFED 430
+LV++ +FAC KNE LAAN+LL F+D
Sbjct: 333 ESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 206/434 (47%), Gaps = 108/434 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I++ V +K+ IE +G D YPA Q LI+ GK+L D T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E F+VVM+TK K+ PA A ++ S P T QT T
Sbjct: 60 EYKIDEKKFIVVMVTKPKL----------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSN 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA V+S + +GQA S L+ G +++ I+
Sbjct: 110 EP------------------------PASENVNSGAS-FGQAESALLMGDEYNQSLRNIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + +E V RALRA++NNP+RAVEYL +GIP + V + GG+
Sbjct: 145 DMG---YPKEQVERALRASFNNPDRAVEYLLNGIP--SDVDDTESSDVGGEE-------N 192
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
P P T G +PL
Sbjct: 193 TLNPLTPD-TCGNEEDPL------------------------------------------ 209
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
++ R QFQ +R ++QANPQ+L +LQ++G+ NP L+++I ++Q F+R++NEP
Sbjct: 210 -----AFLRSQPQFQQMRQVIQANPQLLNAVLQQIGQTNPALLQIISQNQDAFVRMLNEP 264
Query: 361 VEG----------GEGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
G G V G AS + P + VTP+++EAIERL+A+GF LVLE +F
Sbjct: 265 GTGSGATPAPPAAGGNPVSGGAASNVFPPSVIQVTPQDKEAIERLKALGFPEHLVLEAYF 324
Query: 409 ACNKNEELAANYLL 422
AC+KNE LAAN+LL
Sbjct: 325 ACDKNENLAANFLL 338
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 154/443 (34%), Positives = 224/443 (50%), Gaps = 100/443 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFLPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
++QPA A AG L+FLR+
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQP----------- 239
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++
Sbjct: 240 -----------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQ 282
Query: 356 LINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVF 407
++NEP + E V G + PQ + VTP+E+EAIERL+A+GF +LV++ +
Sbjct: 283 MLNEPPGELADISDVEAEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAY 341
Query: 408 FACNKNEELAANYLLDHMHEFED 430
FAC KNE LAAN+LL F+D
Sbjct: 342 FACEKNENLAANFLLS--QNFDD 362
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 214/432 (49%), Gaps = 84/432 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVP-------------- 126
A+T +APA+ TSS T Q T APT P P
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPASASA 121
Query: 127 -ESAPPPAAPAPAP-APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
+ P PA P A +P + + SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+SG G P L+FLRN
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQP--------------- 262
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 263 -------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 309
Query: 360 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 310 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 369
Query: 411 NKNEELAANYLL 422
KNE LAAN+LL
Sbjct: 370 EKNENLAANFLL 381
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 229/439 (52%), Gaps = 69/439 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
P + P S P APA PVSS S +++ +A S L G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSAL--GQSYENMV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 164 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 220
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQVSMMFYLFAS 295
A A PA S P++ P S+A GA L+FLRN
Sbjct: 221 ASAPA--PAISTGLSSPSSTA--------PAQPSSASGANPLEFLRNQP----------- 259
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QF +R ++Q NP +L +LQ++G++NP L++ I HQ F++
Sbjct: 260 -----------------QFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQ 302
Query: 356 LINEPVEGGEGNVLGQLASAMPQA----VTVTPEEREAIERLEAMGFDRALVLEVFFACN 411
++NEPV+ + + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 303 MLNEPVQEAGQGGGAGGVAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 362
Query: 412 KNEELAANYLLDHMHEFED 430
KNE LAAN+LL F+D
Sbjct: 363 KNENLAANFLLQ--QNFDD 379
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 148/439 (33%), Positives = 209/439 (47%), Gaps = 95/439 (21%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQ-------------------TTSSAPPTSTQPTTTSQTPAPTVAPPQ 123
+ + APA Q + AP + PT S TPA T A +
Sbjct: 58 --AVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSE 115
Query: 124 SVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQ 178
P SA PA PA AP + S+ S+++ A S LV G + E V +
Sbjct: 116 PAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 175
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 234
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 176 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 232
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
A +SG G P L+FLRN
Sbjct: 233 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQP---------- 261
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+
Sbjct: 262 ------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFI 303
Query: 355 RLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 405
+++NEPV+ + + S + VTP+E+EAIERL+A+GF LV++
Sbjct: 304 QMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQ 363
Query: 406 VFFACNKNEELAANYLLDH 424
+FAC KNE LAAN+LL
Sbjct: 364 AYFACEKNENLAANFLLQQ 382
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 218/436 (50%), Gaps = 86/436 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-----------------VAPPQSV 125
ST S A Q+ ++ +S+ + +Q P P+ A + +
Sbjct: 154 --STPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPI 211
Query: 126 PESAPPPAAPAPAPAPAP---APAPAPAPV--SSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P PA P AP +P + + + SS S+++ A S LV G + E V +I+
Sbjct: 212 PTSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIM 271
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPP 236
MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 272 SMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAAQSSAV 328
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
A A A T+ +P L+FLRN
Sbjct: 329 AAAAATTTATTTTTTTSGGHP-------------------LEFLRNQP------------ 357
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+++
Sbjct: 358 ----------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 401
Query: 357 INEPV--------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
+NEPV GG + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 402 LNEPVQESGGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 461
Query: 409 ACNKNEELAANYLLDH 424
AC KNE LAAN+LL
Sbjct: 462 ACEKNENLAANFLLQQ 477
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 219/436 (50%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAGED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ E V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEAEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 222/438 (50%), Gaps = 89/438 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++PE+ V +K+ IE +G D +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + SGA AP T++S P S+ T T A + P
Sbjct: 65 KIDEKNFVVVMVTKNK-AGSGA----PAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPA 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
E PP +P + + P+ D AAS LV GS E + +I+ M
Sbjct: 120 APSGEEKPPEEPVTVSPQESIVSSIPPSGSMGRED---DAASTLVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GI
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGI---------------------------- 205
Query: 243 QPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
P +P P GP + P + Q +P G L+FLR+
Sbjct: 206 -PGSPEPERGPIQESQPQE---QPVPE-----GENPLEFLRDQP---------------- 240
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP
Sbjct: 241 ------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEP 288
Query: 361 VE--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
+ GE +G+ A M + VTP+E+EAIERL+A+GF +LV++ +FAC K
Sbjct: 289 LGEMADIADIEGEMGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEK 347
Query: 413 NEELAANYLLDHMHEFED 430
NE LAAN+LL F+D
Sbjct: 348 NENLAANFLLS--QNFDD 363
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 225/437 (51%), Gaps = 88/437 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-P 121
++ E +FVVVM+TK+K +S G S A +S+A P S+ TT+ PA ++ P
Sbjct: 82 RIDEKNFVVVMVTKAK-NSPGTSVPPEA-------SSTAAPESS--TTSPSAPASGMSHP 131
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
P ++ E P P +P P+ SS + AAS LV GS E + +I+
Sbjct: 132 PPTIREDKSPSEESVPTTSPESVSGSVPSSGSSGRE--EDAASTLVTGSEYETMLTEIMS 189
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 190 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 236
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
+QPA A AG L+FLR+
Sbjct: 237 EQPATEA-----------------------AGENPLEFLRDQP----------------- 256
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 257 -----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPP 305
Query: 361 -----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KN
Sbjct: 306 GELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKN 364
Query: 414 EELAANYLLDHMHEFED 430
E LAAN+LL F+D
Sbjct: 365 ENLAANFLLS--QNFDD 379
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 143/423 (33%), Positives = 202/423 (47%), Gaps = 92/423 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSPV---- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP+ AP SS + G S+LV G N E V++++
Sbjct: 108 ----------TEANEAPSITTAP---------SSATSTLGFGESSLVTGENFERVVKELM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 149 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 195
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
++ P P T P G ++GS L ASL
Sbjct: 196 ESVSPEGPGDTDTP----------GSESLGSEDPIAAL----------------ASLP-- 227
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ +R +VQANP++L ++Q++G N L RLIQE++ FL IN
Sbjct: 228 -------------QFQQMRALVQANPELLPQLIQQIGNDNADLFRLIQENEQAFLEFINT 274
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
PV G + S +T+T EER A++RL+A+GF LV++ ++AC KNE+ AAN
Sbjct: 275 PVTG-----TTRPGSQRQTVLTMTAEERAAVDRLKALGFPEELVIQAYYACEKNEDAAAN 329
Query: 420 YLL 422
+LL
Sbjct: 330 FLL 332
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 219/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QP+ + AG L+FLR+
Sbjct: 221 QPS------------------------TEAGENPLEFLRDQP------------------ 238
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 289 ELVDISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 347
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 348 NLAANFLLS--QNFDD 361
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 218/436 (50%), Gaps = 87/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA + G L+FLR+
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQP------------------ 238
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 289 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 347
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 348 NLAANFLLS--QNFDD 361
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 154/443 (34%), Positives = 218/443 (49%), Gaps = 84/443 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ + + S + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACN 411
AIER+ + LVL ACN
Sbjct: 369 AIERVSLSKTLKKLVLGWAHACN 391
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 222/444 (50%), Gaps = 103/444 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ + A+ PT+ T+T+ PAP
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGTSAPLEAS------------PTAASETSTTFLPAPASGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ P +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP-----------------GSP 206
Query: 236 -PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
P + Q+ S + P + AG L+FLR+
Sbjct: 207 EPEHSSVQE-------SQVSEQP-----------ATEAGENPLEFLRDQP---------- 238
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F+
Sbjct: 239 ------------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFI 280
Query: 355 RLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEV 406
+++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++
Sbjct: 281 QMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQA 339
Query: 407 FFACNKNEELAANYLLDHMHEFED 430
+FAC KNE LAAN+LL F+D
Sbjct: 340 YFACEKNENLAANFLLS--QNFDD 361
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 210/451 (46%), Gaps = 105/451 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FE 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
+PP + Q A PA +AG L FLR
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQP--------- 241
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
QFQ +R ++Q NPQ+L P+LQ++G+ NP L++LI ++Q F
Sbjct: 242 -------------------QFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAF 282
Query: 354 LRLINEPVEGGE-GNVLGQLASAMP-------------------QAVTVTPEEREAIERL 393
+R++NEPV G+ SA P + ++P+++EAIERL
Sbjct: 283 VRMLNEPVGAASGGSTPASAISATPPVAPGGLGAGAGAGVPGGPGVIQISPQDKEAIERL 342
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 343 KSLGFPEDLVVQAYFACEKNENLAANFLLSQ 373
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 224/456 (49%), Gaps = 96/456 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSS-----SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E K+ E +FVVVM+ K KV+ SGA+T + + ++A S P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNP------- 113
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P PE P P+ APA P + +++V +++ +A S LV G + E
Sbjct: 114 -----PEGGKPEDKPAEERPSNTSAPASTPTSSSGLLANV-NMFEEATSALVTGQSYENM 167
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQ 231
V +++ MG ++RE V+ +LRA++NNP+RAVEYL +GIP + PV GG
Sbjct: 168 VTEMMLMG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGG- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQVS 287
PA +G P + GS A A T L FL N
Sbjct: 224 --------------TPALNTGSMTTP--------ASTGSLASAATGANPLGFLVNQP--- 258
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
QF +R ++Q NP +L +LQ++G++NP L++ I
Sbjct: 259 -------------------------QFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 293
Query: 348 EHQTDFLRLINEP-------------VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLE 394
HQ F++++NEP G V G+ S M + VTP+E+EAIERL+
Sbjct: 294 SHQEQFIQMLNEPAQEGGQGGGGVGGGGGVGVGVGGEAGSGM-NYIQVTPQEKEAIERLK 352
Query: 395 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 353 ALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 386
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 209/432 (48%), Gaps = 86/432 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FE 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
+PP + Q A PA +AG L FLR
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQP--------- 241
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
QFQ +R ++Q NPQ+L P+LQ++G+ NP L++LI ++Q F
Sbjct: 242 -------------------QFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAF 282
Query: 354 LRLINEP-VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
+R++NEP GG G G P + ++P+++EAIERL+++GF LV++ +FAC K
Sbjct: 283 VRMLNEPVAPGGLGAGAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEK 342
Query: 413 NEELAANYLLDH 424
NE LAAN+LL
Sbjct: 343 NENLAANFLLSQ 354
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 222/466 (47%), Gaps = 92/466 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TT+ + T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 121 PPQSVPESAPP-PAAPAPAPAPAPAPAP---APAPVS----------------SVSDVYG 160
S P + PP PAA PAP +P A P+ S S+++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q P AS G A A T+ S+ G
Sbjct: 238 QGMTDPPQAASTGASPSAVAAAAAAAVTTTTTTTT-----------------TSSTGGHP 280
Query: 277 LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELG 336
L+FLRN Q FQ +R ++Q NP +L +LQ++G
Sbjct: 281 LEFLRNQPQ----------------------------FQQMRQIIQQNPSLLPALLQQIG 312
Query: 337 KQNPHLMRLIQEHQTDFLRLINEPVEGG--------------------EGNVLGQLASAM 376
++NP L++ I +HQ F++++NEPV+ G V + S
Sbjct: 313 RENPQLLQQISQHQEHFIQMLNEPVQESGQGGGGSGGGGGGGGGGGGGGGGVAAEAGSRH 372
Query: 377 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 373 MNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 418
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 209/437 (47%), Gaps = 91/437 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D T + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + APA++ ++ A P T P
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLT-----------P 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S E P A P P P P S AAS LV GS E + +I+ M
Sbjct: 114 SSPKEER--PTADNPTSLPPPETVTGSVPSSGSIGREDDAASTLVTGSEYETMLTEIMSM 171
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G +++E V+ ALRA++NNP RAVEYL GI
Sbjct: 172 G---YEQEQVVAALRASFNNPHRAVEYLLMGI---------------------------- 200
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
P +P P GP Q G L+FLR+
Sbjct: 201 -PGSPEPEGGPIQE-----SQSNEQAAVEGGENPLEFLRDQP------------------ 236
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NPHL++ I HQ F++++NEP
Sbjct: 237 ----------QFQNMRQVIQQNPALLPALLQQLGQENPHLLQQISLHQEQFIQMLNEPSG 286
Query: 361 -------VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+E GE +G + M + VTP+E+EAIERL+A+GF +LV++ +FAC KN
Sbjct: 287 ELGDMSDIE-GEIGAIGDEPTQM-SYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKN 344
Query: 414 EELAANYLLDHMHEFED 430
E LAAN+LL F+D
Sbjct: 345 ENLAANFLLS--QNFDD 359
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 143/429 (33%), Positives = 213/429 (49%), Gaps = 51/429 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ VKTL+ F+++V D + VK+ I+ QG + +QQ LI GK+L D +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K+K + + +S +++ + ++ + P T P A T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S PP A PA ++ + S LV GS LE+ V+ ++
Sbjct: 121 SNIASPASEPP------------ASTPAAPTETTTTATPADTFSQLVTGSQLESVVENMM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R RALRA++NNP+RAVEYL++GIPE + +A Q Q +
Sbjct: 169 SMG---FERAQCERALRASFNNPDRAVEYLFNGIPEHI----LNEMNAAQQ------QPE 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
QQ + PNAN +A A F Q
Sbjct: 216 VQQDTNTQSPTTPNAN--------------DANASMNLFAAAQQHAQQQQQQQQQEQNQN 261
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+ FR FQ +R +VQ NP +LQP+LQ +G+ NP L+R I FL+ E
Sbjct: 262 LNASLANFRNTPHFQQIRQLVQTNPALLQPLLQSIGQSNPELIRAINADPNAFLQAFLEG 321
Query: 361 VEGGEGNVLGQLASAMPQAVT--VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
EG EG +G P+ T VTPEER+AI+RL A+GFD+A+ E +FAC+KNEELAA
Sbjct: 322 AEGEEG-AMG------PETTTIQVTPEERDAIDRLAALGFDKAVAAEAYFACDKNEELAA 374
Query: 419 NYLLDHMHE 427
NYL +H ++
Sbjct: 375 NYLFEHGYD 383
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 151/443 (34%), Positives = 225/443 (50%), Gaps = 95/443 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ E V +K+ IE +G D +P + Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM++K+K S G S + P+ +SS+ +S P +
Sbjct: 61 EYKIDEKNFVVVMVSKTK--SPGTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPAAIP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---AASNLVAGSNLEATVQ 177
P PPA +PA +P +DV G+ A+S LV G +A +
Sbjct: 119 FTDECPRDD-PPATVSPASSP-----------DGGTDVVGEGEDASSTLVTGQEYDAMLT 166
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
I+ MG ++R+ V+ AL+A+YNNP RAVEYL +GIP PV Q NP
Sbjct: 167 NIMSMG---YERDKVVAALKASYNNPHRAVEYLLNGIP----TVPV-------QETNPAP 212
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
AQ P PT G N L+FLR+
Sbjct: 213 ---AQLPTDTQPTEGENP---------------------LEFLRSQP------------- 235
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ++R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++
Sbjct: 236 ---------------QFQSMRQVIQQNPSLLPALLQQLGQENPELLQQISQHQELFIQML 280
Query: 358 NEPVEGGEGNV--------LGQLAS-AMPQA-VTVTPEEREAIERLEAMGFDRALVLEVF 407
N PV GEG + LG + A P + + VT +E+EAIERL+A+GF ALV++ +
Sbjct: 281 NAPVGEGEGELGEGGEFADLGAIGDEAAPGSFIQVTQQEKEAIERLKALGFSEALVVQAY 340
Query: 408 FACNKNEELAANYLLDHMHEFED 430
FAC KNE LAAN+LL+ FED
Sbjct: 341 FACEKNENLAANFLLN--QNFED 361
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 133/213 (62%), Gaps = 29/213 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
++MGGGSWD++ V RALRAAYNNPERAVEYLYS
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 224/437 (51%), Gaps = 88/437 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +SSG S A + A +S++ P + + S TP PTV
Sbjct: 65 RIDEKNFVVVMVTKAK-NSSGTSVPPEASSTAAPESSTSFPLAP-ASGMSHTP-PTVRED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P A+P P+ S S AAS LV GS E + +I+ M
Sbjct: 122 RSPSEESVPTASPESVSGSVPS--------SGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
Q+ TS P AG L+FLR+
Sbjct: 214 QESQVSEQTS---TEP--------------AGENPLEFLRDQP----------------- 239
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 -----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPP 288
Query: 361 -----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KN
Sbjct: 289 GELADISDIEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKN 347
Query: 414 EELAANYLLDHMHEFED 430
E LAAN+LL F+D
Sbjct: 348 ENLAANFLLS--QNFDD 362
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 219/442 (49%), Gaps = 98/442 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++ ++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S S P A PT+ ++TS +PAP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPG----TSVPP--------EASPTAAPESSTSFSPAPASGMS 112
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP A +P+ P +P VS G AAS LV GS E +
Sbjct: 113 HS-----PPTAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
++QPA A AG L+FLR+
Sbjct: 215 ESQVSEQPATEA-----------------------AGENPLEFLRDQP------------ 239
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F+++
Sbjct: 240 ----------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQM 283
Query: 357 INEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFF 408
+NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +F
Sbjct: 284 LNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYF 342
Query: 409 ACNKNEELAANYLLDHMHEFED 430
AC KNE LAAN+LL F+D
Sbjct: 343 ACEKNENLAANFLLS--QNFDD 362
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 156/446 (34%), Positives = 216/446 (48%), Gaps = 74/446 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F++E+ P D V K+ IE +G + YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVS--SSG---ASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E + E FVV+M+TK K SSG AS V AAP + T + A S T + P
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGAT-KGP 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
+S + PP A A AP + S A S LV G + +
Sbjct: 119 EAAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGIALAESALVMGEDYQRM 178
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY-----SGIPEQTAVPPVARASAGG 230
V QI++MG +D+ V RALRA++NNP+RAVEYL G E PP A S G
Sbjct: 179 VSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQSPGR 235
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
+A PP A P T G +GS L FL
Sbjct: 236 EAAAPPG-------ALPLSTEG---------------LGSGGAEDPLAFL---------- 263
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
R QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q
Sbjct: 264 ------------------RFQPQFQQMRQVIQQNPQLLNAVLQQIGQSNPQLLQLISQNQ 305
Query: 351 TDFLRLINEPVEGGEGNVL------GQLASAMPQAVT---VTPEEREAIERLEAMGFDRA 401
F+R++NEP G+ G L S P V VTP+++EAIERL+A+GF
Sbjct: 306 EAFVRMLNEPSPPPGGSGGRTPPAAGALGSGAPLEVNYGQVTPQDKEAIERLKALGFPEY 365
Query: 402 LVLEVFFACNKNEELAANYLLDHMHE 427
LV++ +FAC+KNE LAAN+LL ++
Sbjct: 366 LVIQAYFACDKNENLAANFLLSQNYD 391
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 220/436 (50%), Gaps = 84/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QP+ + AG L+FLR+
Sbjct: 224 QPS------------------------TEAGENPLEFLRDQP------------------ 241
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 242 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 291
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 292 ELVDISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 350
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 351 NLAANFLLS--QNFDD 364
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 206/441 (46%), Gaps = 95/441 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FE 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
+PP + Q A PA +AG L FLR
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQP--------- 241
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
QFQ +R ++Q NPQ+L P+LQ++G+ NP L++LI ++Q F
Sbjct: 242 -------------------QFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAF 282
Query: 354 LRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 403
+R++NEP G P + ++P+++EAIERL+++GF LV
Sbjct: 283 VRMLNEPASAISATPPVAPGGLGAGAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLV 342
Query: 404 LEVFFACNKNEELAANYLLDH 424
++ +FAC KNE LAAN+LL
Sbjct: 343 VQAYFACEKNENLAANFLLSQ 363
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 210/444 (47%), Gaps = 108/444 (24%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 282
Query: 83 GASTVSAAPANQAQTT--------------------------SSAPPTSTQP--TTTSQT 114
+ + APA Q+ ++ PTS P TT S
Sbjct: 283 --AVTTPAPATPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASSE 340
Query: 115 PAPTVAPPQSVPESAP---PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
PAP A Q P P P AA +P + + SS S+++ A S LV G +
Sbjct: 341 PAPASATQQEKPTEKPTETPVAA-------SPTSTDSTSGDSSRSNLFEDATSALVTGQS 393
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARAS 227
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS
Sbjct: 394 YENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAAS 450
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
G T +A +++G L+FLRN
Sbjct: 451 TG--------------------TPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQP--- 487
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
QFQ +R ++Q NP +L +LQ++G++NP L++ I
Sbjct: 488 -------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 522
Query: 348 EHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGF 398
+HQ F++++NEPV+ + + S + VTP+E+EAIERL+A+GF
Sbjct: 523 QHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGF 582
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 583 PEGLVIQAYFACEKNENLAANFLL 606
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 200/424 (47%), Gaps = 109/424 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM VS GA + P T SS P + SQ
Sbjct: 61 EYKIDERNFVVVM-----VSKVGAGNQTHRP-----TVSSRPLAFCSSSDGSQGL----- 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+S LV G+ EA + +I+
Sbjct: 106 ----------------------------------------DASSALVTGAEYEAMLTEII 125
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP PV ++ QA PA
Sbjct: 126 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPVQESNPPAQA---PAPLP 175
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ PA+PA P A P G L FLRN
Sbjct: 176 TESPASPAEGCFP-ACP---------------GENPLAFLRNQP---------------- 203
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QF +R +Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP
Sbjct: 204 ------------QFLHMRQAIQQNPNLLSALLQQLGQENPQLLQQINQHQERFIQMLNEP 251
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
V G + + VTP+E+EAIER +A+GF ALV++ +FAC KNE LAAN+
Sbjct: 252 VGEGGELGAAGEEGSSVNYIQVTPQEKEAIERFKALGFPEALVIQAYFACEKNENLAANF 311
Query: 421 LLDH 424
LL+
Sbjct: 312 LLNQ 315
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 220/451 (48%), Gaps = 116/451 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G ST+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKAK---AGQSTL-------------APPEVS----------PTAAPE 98
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG------------QAASNLV 167
S P P + P PA +P+ A +S V G AAS LV
Sbjct: 99 PSTPFQLSPASGMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG ++RE VI ALRA+YNNP RAVEYL +GIP +
Sbjct: 159 TGSEYETMLMEIMSMG---YERERVIAALRASYNNPHRAVEYLLTGIP----------GN 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
+ G+ ++QPA A AG L+FLR+
Sbjct: 206 PEPEHGSIQESQVSEQPATEA-----------------------AGENPLEFLRDQP--- 239
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
QFQ +R ++Q NP +L +LQ+LG++NP L++ I
Sbjct: 240 -------------------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 274
Query: 348 EHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFD 399
HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF
Sbjct: 275 RHQEQFIQMLNEPPGELADISDVEGEV-GAIGEDAPQMNYIQVTPQEKEAIERLKALGFP 333
Query: 400 RALVLEVFFACNKNEELAANYLLDHMHEFED 430
+LV++ +FAC KNE LAAN+LL F+D
Sbjct: 334 ESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 216/436 (49%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ +P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKAGPGTSAPPETSPTAAPESSTSFPPA---PASGMSHPPPTAKED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTMSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + + ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHSSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A G L+FLR+
Sbjct: 221 QPATEA-----------------------VGDNPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 214/463 (46%), Gaps = 140/463 (30%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
S + G+ +QPA A AG
Sbjct: 204 ----------GSPEPEHGSVQESQAPEQPATEA-----------------------AGEN 230
Query: 276 TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQEL 335
L+FLR+ QFQ +R ++Q NP +L +LQ+L
Sbjct: 231 PLEFLRDQP----------------------------QFQNMRQVIQQNPALLPALLQQL 262
Query: 336 GKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEER 387
G++NP L++ I HQ F++++NEP + EG V G L PQ + VTP+E+
Sbjct: 263 GQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GALGEEAPQMNYIQVTPQEK 321
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 322 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 229/463 (49%), Gaps = 94/463 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPP-----------PAAPAPAPA--------PAPAPAPAPAPV 152
P V P SV P +APP P + PAPA A A + A +
Sbjct: 121 P-VEPAASVEPIDPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+ + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN-----ANPLDLFPQGLPN 267
GIP ++ PP Q+ P P S P G +
Sbjct: 237 GIPAESEQPP-------------------QEVVRPTPVSNPTPPAPQRAQPPPAAAGAES 277
Query: 268 MGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQI 327
G+ A A L+FLR+ QFQ +R ++Q NP +
Sbjct: 278 GGAQASANPLEFLRHQP----------------------------QFQQMRQIIQQNPSL 309
Query: 328 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 387
L +LQ+LG+ NP L++ I +HQ F++++N A+ + VTP+E+
Sbjct: 310 LPALLQQLGRDNPQLLQQITQHQERFVQMLN-------EPEAEAPAAPQTNYIQVTPQEK 362
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 363 EAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 403
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 215/436 (49%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K ++ A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGISAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +A+
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQRAE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 210/424 (49%), Gaps = 85/424 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ AP N P +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSAS---APGN--------PAGEGRPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P S+ ++ G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPT-----------VTTTQSTTTNTLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG +++ VIRA+RA +NNP+RA EYL SG IP V + P+Q
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIV-------------DQPSQ 200
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
+ + +P P D G + GS L L QQ
Sbjct: 201 REGSESVSPEA-------PGDADTPGSESAGSEDPIAALASLPQFQQ------------- 240
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
+R +VQANP++L ++Q++G N L RLIQE++ FL +N
Sbjct: 241 ------------------MRALVQANPELLPQLIQQIGNDNADLFRLIQENEQAFLEFLN 282
Query: 359 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
PV G + A +T+T EER A++RL+A+GF LV++ ++AC KNE+ AA
Sbjct: 283 TPVTG-----TTRPAGQRQTILTMTAEERAAVDRLKALGFPEELVIQAYYACEKNEDAAA 337
Query: 419 NYLL 422
N+LL
Sbjct: 338 NFLL 341
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 219/442 (49%), Gaps = 98/442 (22%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P PA ++ P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFP----------LAPASGMSHP 114
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
P PA +P+ P +P VS G AAS LV GS E +
Sbjct: 115 -------PSPAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEITSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
++QP PT NP L+FLR+
Sbjct: 215 ESQVSEQP----PTEAAGENP-------------------LEFLRDQP------------ 239
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F+++
Sbjct: 240 ----------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQM 283
Query: 357 INEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFF 408
+NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +F
Sbjct: 284 LNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYF 342
Query: 409 ACNKNEELAANYLLDHMHEFED 430
AC KNE LAAN+LL F+D
Sbjct: 343 ACEKNENLAANFLLS--QNFDD 362
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 215/431 (49%), Gaps = 68/431 (15%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ K L+ F + +V P+ V +VK+ I+ QG Y +Q LI+ G++L D T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
EE + E F+V M VS APA++ +T + +TT TP T
Sbjct: 58 EEYDIKEKDFIVCM-------------VSRAPASKVKTEQKT--EEKKQSTTESTPLNT- 101
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++ P PAP P A A + + + G S+LV G+ A + +
Sbjct: 102 --------TSTSPKTPAPESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNM 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE +A A
Sbjct: 152 VEMG---YERSQVELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNA 208
Query: 240 QAQQ-PAAPAPTSGPNANPLDLFPQGLPNMG--SNAGAGTLDFLRNSQQVSMMFYLFASL 296
A AAPA ++ P A P +LF Q + +GA D L
Sbjct: 209 TAASGNAAPANSTQP-AAPGNLFEQAAAHAQGEEESGASGEDPL---------------- 251
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
+ R L QFQ LR +VQ NPQ+L+ +LQ++G+ NP L ++I ++ FL+L
Sbjct: 252 ---------GFLRELPQFQQLRQIVQQNPQMLEGILQQIGESNPALAQIISQNPEAFLQL 302
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
+ E V+G G L Q + +TPEE ++IERL +GFDR +V++ + AC+KNEEL
Sbjct: 303 LAEGVDGE-----GVLPPGTIQ-IEITPEENQSIERLCQLGFDRNIVIQAYLACDKNEEL 356
Query: 417 AANYLLDHMHE 427
AANYL +H HE
Sbjct: 357 AANYLFEHGHE 367
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 227/441 (51%), Gaps = 61/441 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E++FVVVM++K K + + + + +T S + QP++++ P T A
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQPSSSATAPTTTSA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + A + +S S + QA S LV G++ E TV ++
Sbjct: 120 PSGTTGTES----------TDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMV 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQ----A 232
MG + R V+RAL+A+YNNP RA+EYL P E+ A P + AGGQ
Sbjct: 170 GMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLT 226
Query: 233 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFY 291
+PP Q+PA + S P +A P PQG G +AG G Q S +
Sbjct: 227 SSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQG----GLSAGGG--------QSASNVLQ 272
Query: 292 LFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351
+ L QFQALR VQ NP +L +LQE+G+ NP L++LI ++Q
Sbjct: 273 GLSQLP---------------QFQALRAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQ 317
Query: 352 DFLRLINEPVEG-GEGNVL--GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
+F+ L+N+P + G G L G + ++ VT EEREAI+RL+A+GF V++ +
Sbjct: 318 EFVDLLNQPPQPIGSGQELPPGTV------SIQVTQEEREAIDRLKALGFPEGEVIQAYL 371
Query: 409 ACNKNEELAANYLLDHMHEFE 429
AC+KNE LAAN LL + E
Sbjct: 372 ACDKNETLAANLLLSSADDPE 392
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/183 (54%), Positives = 123/183 (67%), Gaps = 29/183 (15%)
Query: 248 APTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYS 306
AP+SG PN+ PL+LFPQ AG G+LDFL N+QQ
Sbjct: 18 APSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQ--------------------- 56
Query: 307 YFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 366
FQALR+MVQANPQIL+PMLQELGKQNP L+R IQEH +FL+LINEPV+G +G
Sbjct: 57 -------FQALRSMVQANPQILRPMLQELGKQNPQLLRSIQEHDQEFLQLINEPVDGSDG 109
Query: 367 NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426
++ +P V+VTPEE+E IERLEAMGFDRALV+E F AC++NEELAANYLL+
Sbjct: 110 DMFDLADQEIPHTVSVTPEEQEVIERLEAMGFDRALVIEAFLACDRNEELAANYLLEQAG 169
Query: 427 EFE 429
++E
Sbjct: 170 DYE 172
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/437 (33%), Positives = 213/437 (48%), Gaps = 89/437 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
Q+ AP + AG L+FLR+
Sbjct: 214 QESQAPE------------------QPATEAGENPLEFLRDQP----------------- 238
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 239 -----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPP 287
Query: 361 -----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KN
Sbjct: 288 GELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKN 346
Query: 414 EELAANYLLDHMHEFED 430
E LAAN+LL F+D
Sbjct: 347 ENLAANFLLS--QNFDD 361
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/437 (33%), Positives = 213/437 (48%), Gaps = 89/437 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 82 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 133
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 134 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 190
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 191 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 230
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
Q+ AP + AG L+FLR+
Sbjct: 231 QESQAPE------------------QPATEAGENPLEFLRDQP----------------- 255
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 256 -----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPP 304
Query: 361 -----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 413
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KN
Sbjct: 305 GELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKN 363
Query: 414 EELAANYLLDHMHEFED 430
E LAAN+LL F+D
Sbjct: 364 ENLAANFLLS--QNFDD 378
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 213/436 (48%), Gaps = 86/436 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNE 348
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 349 NLAANFLLS--QNFDD 362
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 206/416 (49%), Gaps = 86/416 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 61 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAREDKSPSEES--------APTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA A
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPATEA-------------- 202
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQ 322
AG L+FLR+ QFQ +R ++Q
Sbjct: 203 ---------AGENPLEFLRDQP----------------------------QFQNMRQVIQ 225
Query: 323 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 376
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 226 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 284
Query: 377 PQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 285 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 338
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 213/458 (46%), Gaps = 94/458 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ K LK F IE D +S VK I+T +G + S LI+ GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K+K T A ++ + S P S+ P T P A
Sbjct: 62 SYNIDEKGFIVCMVSKAK-------TAPKASSSSSAAAPSTPVKSSTPVQTPSAPIANAA 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP + P P PAP A S + S+L GS E+ + Q+
Sbjct: 115 SSSTVPAAVP----------ETPTPAPQVAATSQPTTAAFNDPSSLAMGSARESAILQMT 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG + R V A+RAA+NNP+RAVEYL +GIPE Q PP + A PP Q
Sbjct: 165 EMG---FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRA------PPTQ 215
Query: 239 TQA-----------QQPAAPAPTSGPNANPLDLF---------PQGLPNMGSNAGA---- 274
QPAA A + P++LF +G P G A
Sbjct: 216 PTTGATAAPAATTESQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPL 275
Query: 275 --------GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQ 326
LDFLRN+ QFQ LR ++Q +PQ
Sbjct: 276 AALAGGGGANLDFLRNNP----------------------------QFQQLRQVIQEHPQ 307
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
+L+P+LQ++G+ NP L +LI + FLRL+ E ++ E A+ VT EE
Sbjct: 308 MLEPILQQVGQANPQLAQLISTNPEGFLRLLGEGIDEEELAGAAPGGGL---AIHVTEEE 364
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
R+AIERL +GF+R +V++ +FAC+KNEE+AAN+L ++
Sbjct: 365 RDAIERLCQLGFERDVVIQAYFACDKNEEMAANFLFEN 402
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 206/416 (49%), Gaps = 86/416 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 61 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA T G NP
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----TEGAGENP----- 207
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQ 322
L+FLR+ QFQ +R ++Q
Sbjct: 208 --------------LEFLRDQP----------------------------QFQNMRQVIQ 225
Query: 323 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 376
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 226 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 284
Query: 377 PQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 285 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 338
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 206/416 (49%), Gaps = 87/416 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 185
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 186 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAREDKSPSEES--------APTTS 234
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 235 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 291
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 292 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 324
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQ 322
+ AG L+FLR+ QFQ +R ++Q
Sbjct: 325 -------TEAGENPLEFLRDQP----------------------------QFQNMRQVIQ 349
Query: 323 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 376
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 350 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 408
Query: 377 PQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 409 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 462
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/423 (34%), Positives = 208/423 (49%), Gaps = 101/423 (23%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 207
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA---PAPAP 139
SA P A PT+ ++TS PAPT S PPPAA +P+
Sbjct: 208 ----TSAPP--------EASPTAAPESSTSFLPAPTSG------MSHPPPAAREDKSPSE 249
Query: 140 APAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 195
AP +P S S AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 250 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 306
Query: 196 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 255
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 307 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 346
Query: 256 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQ 315
+ AG L+FLR+ QFQ
Sbjct: 347 --------------TEAGENPLEFLRDQP----------------------------QFQ 364
Query: 316 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVL 369
+R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V
Sbjct: 365 NMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV- 423
Query: 370 GQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 424 GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QN 481
Query: 428 FED 430
F+D
Sbjct: 482 FDD 484
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 204/416 (49%), Gaps = 87/416 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 97
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 98 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 146
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 147 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 203
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 204 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 236
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQ 322
+ G L+FLR+ QFQ +R ++Q
Sbjct: 237 -------TEGGENPLEFLRDQP----------------------------QFQNMRQVIQ 261
Query: 323 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 376
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 262 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 320
Query: 377 PQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 321 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 374
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 150/424 (35%), Positives = 211/424 (49%), Gaps = 84/424 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 277 EFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGR 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---------VTVTPEERE 388
+NP L++ I +HQ F++++NEPV+ G G + A + VTP+E+E
Sbjct: 309 ENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEPGNGPMNYIQVTPQEKE 368
Query: 389 AIER 392
AIER
Sbjct: 369 AIER 372
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 117/171 (68%), Gaps = 29/171 (16%)
Query: 260 LFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRT 319
+FPQ + G+ AGAG+LDFLRN+ Q FQALRT
Sbjct: 1 MFPQETIS-GAGAGAGSLDFLRNNPQ----------------------------FQALRT 31
Query: 320 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 379
MVQ+NPQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP A
Sbjct: 32 MVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHA 91
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
V VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 92 VNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 142
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 213/425 (50%), Gaps = 99/425 (23%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P S Q LI+ GK+L D + + K+ E +FVVVM+TK+K
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK--- 118
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
A ++AP ++ ++ A + +P+T + VA P PP AP+ P
Sbjct: 119 --AGLATSAP---SEPSAPAAANTLEPSTPTPPAPAIVAMPL-------PPPAPSEEQKP 166
Query: 142 APAPAPAPAPVSSVSDVY--------GQAASNLVAGSNLEATVQQILDMGGGSWDRETVI 193
A PA P + + AAS LV GS E + +I+ MG ++RE V+
Sbjct: 167 AEEPAAGTPPEAGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVV 223
Query: 194 RALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP 253
ALRA+YNNP RAVEYL +GIP S ++G P Q ++Q P PAP G
Sbjct: 224 AALRASYNNPHRAVEYLLTGIP----------GSPEPESG--PVQ-ESQAPEQPAPEGGE 270
Query: 254 NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQ 313
N L+FLR+ Q
Sbjct: 271 N---------------------PLEFLRDQP----------------------------Q 281
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGN 367
FQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG
Sbjct: 282 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSDVEGE 341
Query: 368 VLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 342 V-GAIGEESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS-- 398
Query: 426 HEFED 430
F+D
Sbjct: 399 QNFDD 403
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 214/441 (48%), Gaps = 86/441 (19%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+++ K S+S + ++ N + P + P+ TV
Sbjct: 58 GEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASV---------PEKKVEAPSSTV 108
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A S ++ A AP+ A + AP+ A+ L G+ V+ +
Sbjct: 109 AESTSTTQTVA-----AAAPSNPDTTATSEAPID---------ANTLAVGAQRNVAVENM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RA+RAA+NNP+RAVEYL +GIPE + R + Q+
Sbjct: 155 VEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPED--ILNRQREESAAALAAQQQQS 209
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQVSMMFYL 292
+A P + P +LF Q + N G L FLR+
Sbjct: 210 EALAPTS-------TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRS---------- 252
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
+ QFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++
Sbjct: 253 ------------------IPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEA 294
Query: 353 FLRLINEPVEGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFA 409
FL+L+ EG EG SA+P + +T EE E+I+RL +GFDR +V++ + A
Sbjct: 295 FLQLL---AEGAEGE------SALPSGGIQIQITQEESESIDRLCQLGFDRNIVIQAYLA 345
Query: 410 CNKNEELAANYLLDHMHEFED 430
C+KNEELAANYL +H HE ED
Sbjct: 346 CDKNEELAANYLFEHGHESED 366
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 215/438 (49%), Gaps = 56/438 (12%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP AS + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------ASPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A A L + A A + F S + L +C
Sbjct: 221 QPATEAGGCARAACALQMH-------SPCAFAFAVCFTWRKPSASPILQASPPAL-VCSS 272
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQ-PMLQELGKQNPH-LMRLIQEHQTDFLRLINEP 360
F + QF+ + + Q + P L PH L + I HQ F++++NEP
Sbjct: 273 FLARH----SQFKGCDDLGRGGDQGCELPCL-------PHPLPQQISRHQEQFIQMLNEP 321
Query: 361 ------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC K
Sbjct: 322 PGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEK 380
Query: 413 NEELAANYLLDHMHEFED 430
NE LAAN+LL F+D
Sbjct: 381 NENLAANFLLS--QNFDD 396
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 206/417 (49%), Gaps = 86/417 (20%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P + Q LI+ GK+L D ++E + E +FVVVM+TK+K
Sbjct: 36 EVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQ 95
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
S + +P ++++ PP PT+ P PP S + +P + A A
Sbjct: 96 STPAPPEVSPTAAPESSTPFPPA---PTSGMSHP-----PPASREDKSP---SEESATAT 144
Query: 142 APAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201
+P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 145 SPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 201
Query: 202 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
NP RAVEYL +GIP S + G+ +QPA A
Sbjct: 202 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVPEQPAVEA------------- 238
Query: 262 PQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMV 321
AG L+FLR+ QFQ +R ++
Sbjct: 239 ----------AGENPLEFLRDQP----------------------------QFQNMRQVI 260
Query: 322 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASA 375
Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 261 QQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEE 319
Query: 376 MPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 320 APQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 374
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 216/452 (47%), Gaps = 80/452 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G + + + Q LI+ GK+L D T L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ + SA+ + + SSA + + VA
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E + A P P P S +D+ +A S LV GS+ + V +++
Sbjct: 121 PADKLEEK-------ESSTAEPPPPPPPARSSESSTDLLSEAVSTLVTGSSYDTMVNEMM 173
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQT 239
MG ++RE V+ ALRA+YNNP+RAVEYL SGIP Q + S G P +++
Sbjct: 174 LMG---YEREQVVAALRASYNNPDRAVEYLLSGIPGQD------QGSRTGPDSTPAVSES 224
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
A A + ++P S G L FLRN
Sbjct: 225 PAAPAGGTAAPTSTESSP------------SAGGGNPLGFLRNQP--------------- 257
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QF +R ++Q N +L +LQE+G++NP L++ I HQ F++++NE
Sbjct: 258 -------------QFHVMRQLIQQNAALLPALLQEIGRENPELLQEISNHQEQFIQMLNE 304
Query: 360 P---------------------VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGF 398
P G G + + VTP+E+EAIERL+A+GF
Sbjct: 305 PNPDPVPGGGGGGGGGGGGGGGARGAGGTGADTSGESQMSYIQVTPQEKEAIERLKALGF 364
Query: 399 DRALVLEVFFACNKNEELAANYLLDHMHEFED 430
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 365 PEGLVIQAYFACEKNENLAANFLL--QQNFDD 394
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 224/450 (49%), Gaps = 86/450 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSK---------VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ 113
++ E +FVVVM+TK VS + S ++ P S A PT+T ++TS
Sbjct: 65 RIDEKNFVVVMVTKVGVLMPAPFFWVSQAKTSPGTSVP-------SEASPTATPESSTSF 117
Query: 114 TPAPTVA---PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
AP PP + E P AP +P P+ S + AAS LV GS
Sbjct: 118 PSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGRE--EDAASTLVTGS 175
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL + E P GG
Sbjct: 176 EYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEP-------GG 225
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQVSM 288
+ P + + + P +PA G+ G G L+FLR+
Sbjct: 226 ERWGGPGRAERRPPVSPARAEYAG--------------GAAVGTGENPLEFLRDQP---- 267
Query: 289 MFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 348
QFQ +R ++Q NP +L +LQ+LG++NP L++ I
Sbjct: 268 ------------------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISR 303
Query: 349 HQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDR 400
HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF
Sbjct: 304 HQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPE 362
Query: 401 ALVLEVFFACNKNEELAANYLLDHMHEFED 430
+LV++ +FAC KNE LAAN+LL F+D
Sbjct: 363 SLVIQAYFACEKNENLAANFLLS--QNFDD 390
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 213/442 (48%), Gaps = 46/442 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P ++++K I+ QG + Q +I GK+L D +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA--PT 118
+ +V E F V+ML K K A TV A T+++A P+ST + TPA P
Sbjct: 58 DIEVKEKDFFVIMLMKPKT----APTVPAP-----STSAAAVPSSTSAPVQTSTPAAPPA 108
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P + PES P A + PA AP G + GS L+ T+ +
Sbjct: 109 TSTPSANPESTPATTTEPQAAVDSSTPAVAP----------GTQDPGFLTGSGLQTTIDE 158
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAVPPVARASAGGQAGNPPA 237
I++ G + RE V++A+RAA+NNP+RAVEYL +GIP A+PP A AG
Sbjct: 159 IVN--GMGFPREEVVKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATAT 216
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
A PAP + P +LF ++ + + S +
Sbjct: 217 APTPGANAVPAPVA-PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSRV 275
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
R Q LR +VQ NPQ+LQP +Q+LG+ NP L+ + + + +
Sbjct: 276 L-------ESLRNNPQMVQLRQLVQTNPQLLQPFMQQLGQSNPALLAQLSANPELLMGFL 328
Query: 358 NEPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
+E EGG LG Q V VTPEE+EAI+RL MGF+R L ++ +F
Sbjct: 329 SEGADQAGDFGMDEGGFPPGLGGGDGTGAQYVQVTPEEQEAIDRLVGMGFERQLAIQAYF 388
Query: 409 ACNKNEELAANYLLDHMHEFED 430
AC+KNEE+AANYL++ H FED
Sbjct: 389 ACDKNEEMAANYLVE--HGFED 408
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 218/443 (49%), Gaps = 80/443 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK FEI+ +P + V VK+ I ++G +V Q LI+ GK+LKD T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+V M++K K SSS SAAP S P+T S+ A T A
Sbjct: 58 SYKVEEKGFIVYMVSKPKTSSS-----SAAP-------------SQGPSTPSRAAASTPA 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA AP P+PA A S+ +D S L+ G E V Q+
Sbjct: 100 APPAPAPATSAPAQAAPPATPSPAATGASQSGSAFND-----PSALMTGRENENAVAQME 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ + RA+RAA+ NP+RAVEYL SGIP+ + A A
Sbjct: 155 SMG---FARDDINRAMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPT 211
Query: 241 AQQPAAPAP-TSGPNANPLDLFPQ----GLPNMGSNAGAG-----TLDFLRNSQQVSMMF 290
Q P+ + T+ P++LF G + G +G LDFLR++
Sbjct: 212 PQAPSGESGLTTAGGDEPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPH----- 266
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
FQ LR +VQ NPQ+L+P+LQ+L NP + LI +++
Sbjct: 267 -----------------------FQQLRQLVQQNPQMLEPILQQLASGNPQIAALIGQNE 303
Query: 351 TDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVF 407
FL+L++E E G A+P + VT EER+AIERL +GF R V++ +
Sbjct: 304 EQFLQLLSEEDEEG----------ALPPGTHQIHVTEEERDAIERLCRLGFSRDSVIQAY 353
Query: 408 FACNKNEELAANYLLDHMHEFED 430
FAC+KNEELAANYL ++ + ED
Sbjct: 354 FACDKNEELAANYLFENPDDPED 376
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 218/446 (48%), Gaps = 79/446 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ ++E V +K+ IE+ G + YPASQQ LI+ G +L D T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVM+ K+ V+++ A A +T ++ T + T + + T A
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEA----GKTITNESTTEKKKEDTPASKSTTTA 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + PA A A A A S ++ QA +NLV G N VQ I+
Sbjct: 116 SSTSSPSKSSSEQSQQPAAAQETASGGAAASQSQIA----QAEANLVMGENYNTMVQNIM 171
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA----VPPVARASAGGQAGNPP 236
+MG +DR++V+RAL A++NNPERAVEYL +GIPE P +GG GN
Sbjct: 172 EMG---YDRDSVVRALNASFNNPERAVEYLITGIPEMALQDRPAPVGGNEQSGGGGGNIG 228
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
A A + SG N D P L FLR Q
Sbjct: 229 AALDRSSNLASSGESGGN----DESP--------------LAFLRRQAQ----------- 259
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
FQ +R ++Q NP++L +LQ++G+ NP L++LI E+Q F+ +
Sbjct: 260 -----------------FQQMRNVIQQNPEMLNAVLQQIGQANPALLQLISENQEAFVNM 302
Query: 357 INEPVEGGE-----------GNVLGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVL 404
+NE +G + GN G L ++P+ T ++REAIERL+A+GF LV+
Sbjct: 303 LNESEDGRQAPSGGNDDDDRGNFGGLLDVGSVPE---FTQQDREAIERLKALGFPDELVV 359
Query: 405 EVFFACNKNEELAANYLLDHMHEFED 430
+ + AC KNE LAAN+LL F+D
Sbjct: 360 QAYIACEKNENLAANFLLSQT--FDD 383
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 128/247 (51%), Gaps = 63/247 (25%)
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
V+ ++ YG ASN V GSNLE T+QQI+DMGGGSWDR+TV ALRAA NNPE V+YLY
Sbjct: 62 VNVTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVDYLY 121
Query: 212 SGIPEQTAV------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL 265
SGIPE + P+ + + G A A A N++PL++FP+ +
Sbjct: 122 SGIPEVVEIFMSIGPYPINQTTKIGGA------------TARAVFGVHNSSPLNMFPKEI 169
Query: 266 PNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANP 325
G AG G LDF RN+
Sbjct: 170 I-CGVGAGIGLLDFHRNN------------------------------------------ 186
Query: 326 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 385
LQP+L ELGKQN L+RLI EH +FL L NEPVEG EG++ Q MP ++ VTP
Sbjct: 187 --LQPVLXELGKQNLSLLRLISEHHVEFLXLTNEPVEGSEGDIFDQPEQDMPHSINVTPA 244
Query: 386 EREAIER 392
E+ AI+R
Sbjct: 245 EQHAIKR 251
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 200/427 (46%), Gaps = 108/427 (25%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTS-- 112
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP---TVAPPQSVPESAPPPAAPAPAP 139
P+S P TS T AP T PP + PP AP
Sbjct: 113 --------------------PSSAVPPETSPTAAPESSTTFPPAPASGMSHPPPAPREDK 152
Query: 140 APAPAPAPAPAPVSSVSDVYG--------QAASNLVAGSNLEATVQQILDMGGGSWDRET 191
+P+ PA +P S V AAS LV GS E + +I+ MG ++RE
Sbjct: 153 SPSEESIPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERER 209
Query: 192 VIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTS 251
V+ ALRA+YNNP RAVEYL +GIP S + G+ ++QP A
Sbjct: 210 VVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPTTEA--- 256
Query: 252 GPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLL 311
AG L+FLR+
Sbjct: 257 --------------------AGENPLEFLRDQP--------------------------- 269
Query: 312 FQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGE 365
QFQ +R ++Q NP +L +LQ+LG++ L + I HQ F++++NEP + E
Sbjct: 270 -QFQNMRQVIQQNPALLPALLQQLGQETLSLPQQISRHQEQFIQMLNEPPGELADISDVE 328
Query: 366 GNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
G V G + PQ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 329 GEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLS 387
Query: 424 HMHEFED 430
F+D
Sbjct: 388 --QNFDD 392
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 150/272 (55%), Gaps = 48/272 (17%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ + +V G LEATV I+ MG ++RE V++ALRAA+NNP+RAVEYL +GIPEQ P
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGA-GTLDF 279
A + PA A Q ++ L+LFP+G+P+M G AG G LDF
Sbjct: 62 RPAAQAQ-------PAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
LR + Q FQA+R MVQ NPQILQPML EL +QN
Sbjct: 115 LRENPQ----------------------------FQAIRAMVQGNPQILQPMLAELQRQN 146
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--------VTVTPEEREAIE 391
P L LI +Q +FL L+NEP+ +++ +P+ + +T EERE ++
Sbjct: 147 PQLYHLINANQEEFLALLNEPLPENIQDLMSDFGEGVPELEGQGEGMQIELTQEERETVD 206
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
RL +GF + +E F AC+KNE+LAANYLL+
Sbjct: 207 RLAGLGFPVEICIEAFLACDKNEQLAANYLLN 238
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 128/218 (58%), Gaps = 43/218 (19%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+++V V AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YL
Sbjct: 97 PLNTVDHV----ASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYL 152
Query: 211 YSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
YSGIP + AVP V + + T A P + PN PL LFPQ N
Sbjct: 153 YSGIPVTAEVAVPVVPQGA---------NSTDATPPGVTGLSGIPNTAPLSLFPQWASNA 203
Query: 269 GSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQIL 328
G AG G+LDFLRN+Q QFQALR MV NPQIL
Sbjct: 204 GGAAGGGSLDFLRNNQ----------------------------QFQALREMVHTNPQIL 235
Query: 329 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 366
QPMLQELG+ +P L+RLIQE+ +F L NE + G+G
Sbjct: 236 QPMLQELGRVDPQLLRLIQENSDEFFGLPNENFDAGDG 273
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 203/421 (48%), Gaps = 84/421 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 289
Query: 361 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC K +
Sbjct: 290 ELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKKK 348
Query: 415 E 415
+
Sbjct: 349 K 349
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 195/427 (45%), Gaps = 101/427 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VK L F IE+ + V D+K+ I ++G+ +PA Q LI QG+++ D ++
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ FVV+M++K PA AQ A T + A V
Sbjct: 62 TYDLKSVKFVVIMVSK--------------PATGAQ--PGAASTEQPAAPAAAAEAKPVE 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ P+ A P A P+ + A S LV G + V+ I
Sbjct: 106 SPEEKPKEAGTPTATRPSTTTPSTDSSAGN------------ESTLVVGEQYKQMVESIT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + ++ V RALRA+YNNP+RAVEYL +G PP + A NP A Q
Sbjct: 154 EMG---YPQDQVERALRASYNNPDRAVEYLVTGF------PPEEEEAR--AAENPRAPRQ 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
P G+ G L FLRN Q
Sbjct: 203 -------------------------PGAGTQ---GDLSFLRNQPQ--------------- 219
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
FQ +R ++ NP +L ++Q+LG NP L+RLI ++Q DF+RL+NE
Sbjct: 220 -------------FQQMRNAIRDNPALLDTIIQQLGSNNPDLLRLITQNQDDFMRLLNEE 266
Query: 361 VEGGEGNV--LGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+ EG + LG+ A A V VTP++REAIERL+A+GF LV+E +FAC+KNE+
Sbjct: 267 DDAAEGALPELGEGAPAGGPLVIEAHVTPQDREAIERLKALGFPEHLVVEAYFACDKNED 326
Query: 416 LAANYLL 422
LA N+LL
Sbjct: 327 LAVNFLL 333
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 201/443 (45%), Gaps = 122/443 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+ L +F I ++P V D+K+ IE +G D Y Q LI++GK+LKD L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPTV 119
E + E+ F+V+M++K SG + V+ + N A Q +++ + P
Sbjct: 60 EYNIDEDKFIVIMVSK---PDSGTTEVANSGDNSATQPSATPAAAPAPAAPAAPAPVAPA 116
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ S ESA L+ G E VQ I
Sbjct: 117 SNLSSEAESA------------------------------------LLMGEEYENMVQNI 140
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V +ALRA+YNNP+RAVEYL +GIP A G+
Sbjct: 141 VDMG---YPRDQVEQALRASYNNPDRAVEYLINGIP------------AMGE-------- 177
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q AAP+ + G+ S+A + L FLR+ Q
Sbjct: 178 --DQEAAPSMS-------------GIDERQSDA-SDPLAFLRSQPQ-------------- 207
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
FQ ++ +VQ NPQ+L +LQ+LG+ NP L+ LI ++Q F+RL+NE
Sbjct: 208 --------------FQQMKQVVQQNPQLLNAVLQQLGQTNPALLNLISQNQESFVRLLNE 253
Query: 360 PVEG----GEGNV--------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 407
P G GN G + TP++++AIERL+A+GF LV++ +
Sbjct: 254 PSAGAAPAATGNAPPAPVVAQGGGGTPPQGTTIQFTPQDKDAIERLKALGFPEHLVVQAY 313
Query: 408 FACNKNEELAANYLLDHMHEFED 430
FAC KNE LAAN+LL F+D
Sbjct: 314 FACEKNENLAANFLLS--QNFDD 334
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 208/429 (48%), Gaps = 95/429 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K + S + ++ ++ P ++ T+ QT +
Sbjct: 59 DVGIKEGERLVVLLSKGASQKAAESQQNKQNNTSNESNTNTDPAASATTSNIQTQSGNSD 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AS L+ G+ LE T+ I+
Sbjct: 119 PS------------------------------------IDSRASALLTGTELEETITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------- 176
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ P AP PT N P++ N NAG + L + Q + L + L
Sbjct: 177 -ENPVAPNPT---NITPVN------SNASLNAGLTPSEELSSEQLPGNLESLRTNPL--- 223
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
FQ LR++VQ +P+IL +L +G+ NP +++LI E+Q +F+R++
Sbjct: 224 -------------FQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM--- 267
Query: 361 VEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
E + + +G+ + M + +TP+E E++ERL+A+GF R V+E + C KNEELAAN
Sbjct: 268 -ERTDSDEVGETSQFPMQTTIQLTPQEAESVERLQALGFPRNAVIEAYLICEKNEELAAN 326
Query: 420 YLLDHMHEF 428
YLL++ +F
Sbjct: 327 YLLENSADF 335
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 164 bits (415), Expect = 9e-38, Method: Composition-based stats.
Identities = 136/433 (31%), Positives = 204/433 (47%), Gaps = 96/433 (22%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ K LK F I+ V P + VK+ I+ VQG D+ Q LI+ GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+ K K Q P+ ++
Sbjct: 1097 ESYDIKEKDFIVCMVQKPK----------------------------------QVPSASI 1122
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+V + P A AP + P + VSS S+ + S LV G + ++ +
Sbjct: 1123 VAESTVSTNQSDPKASAPETSLPSVPGTS---VSSSSETFNDPNS-LVVGLLCDTAIKNM 1178
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE + + ++S+ Q
Sbjct: 1179 MEMG---YERTQVENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQIV 1235
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ-------------GLPNMGSNAGAGTLDFLRNSQQV 286
Q+ + P T + N +L Q G MGSN A +L FLRN+
Sbjct: 1236 QSTPTSTPTSTPSRSENLFELAAQVSQQGRERLNTSSGNSLMGSN-NAESLAFLRNNP-- 1292
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
QF LR +VQ PQ+L+ +LQ+LG+ N L LI
Sbjct: 1293 --------------------------QFLMLRRLVQTQPQMLESVLQQLGQGNLQLATLI 1326
Query: 347 QEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVL 404
++ FL+L++E +E G+G +AMP V +T EER+AIERLEA+GF +V+
Sbjct: 1327 NQNSDAFLQLLSEGME-GDG------TAAMPNIVQLQLTEEERQAIERLEALGFSHGVVV 1379
Query: 405 EVFFACNKNEELA 417
+ +FAC+KNEE++
Sbjct: 1380 QAYFACDKNEEVS 1392
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 201/429 (46%), Gaps = 35/429 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VK+L G +F I+V+P D V VK+ I+ QG +PA Q LI+ GK+L D +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
E ++ E F+VVM++K K + +A ++ + A +T + S TPA P
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGESALSATPAKPKA 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + S P AA A + PAP+ P ++ + ++G+ LE V I
Sbjct: 118 ESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGSFLSGAELETAVSSI 177
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG + +E V RA+R ++NNP+RAVEYL +G+P++TA P P
Sbjct: 178 IEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSRTTGVPATPATP---- 230
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+PAP + P PN G +G L F + + S LL
Sbjct: 231 ------SPAPVTSMQETPTGAGAGRAPNAGQ---SGNL-FEQAAAMQSGTNRASEGLLGE 280
Query: 300 CDVFWYSYFRL-----LFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
D L L Q LRT+++ NP LQP++Q L + NP L + L
Sbjct: 281 EDAQGRQILDLGNPQVLSQ---LRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEGVL 337
Query: 355 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
R++ GEG + G+ + +P + E+R +E++ AMG +E +F C +N
Sbjct: 338 RML-----AGEG-LEGEDSFEVPSLQQLADEDRTQVEQIVAMGIPERKAIESYFMCGRNL 391
Query: 415 ELAANYLLD 423
E+A Y +
Sbjct: 392 EMAVQYYFE 400
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 146/453 (32%), Positives = 212/453 (46%), Gaps = 111/453 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F +E +P + VSDVK+ I +G + ASQQ LI+ GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT--TSQTPAPT 118
+ E F+V M+TK K + + +S A + ++ P + + TS T P
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVP- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A P+PA A PAP P+ + L G+ A + +
Sbjct: 117 --------------ATPSPAGASIPAPQATPS----------NETTGLAMGAERSAQIAE 152
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ--TAVPPVARASAGGQAGNPP 236
+ MG ++R + A+RAA+ N ERA+EYL +GIPE+ P A A QA +PP
Sbjct: 153 MESMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPP 209
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------------------- 275
A +G +P+DLF Q N G+ GA
Sbjct: 210 A-------------AGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGL 255
Query: 276 -TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQE 334
LDFLRN+ Q + R +VQ PQ+L+P+LQ+
Sbjct: 256 GNLDFLRNNPQFQQL----------------------------RQVVQQQPQMLEPILQQ 287
Query: 335 LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIE 391
+G NP L LI +H FL+L++E + + +P QA+ VTPEER+AIE
Sbjct: 288 VGAGNPQLATLISQHPEQFLQLLSENADDD---------APLPPGAQAIEVTPEERDAIE 338
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
RL +GF+R ++ +FAC+KNEELAAN+L +
Sbjct: 339 RLCRLGFNREQAIQAYFACDKNEELAANFLFEQ 371
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 205/464 (44%), Gaps = 96/464 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVA------------- 224
++ G + RE V +A+RAA+NNP+RAVEYL +GIP PPV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVTLPTNAPSTVNPSA 212
Query: 225 -------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+ LRN+ Q+ LR +VQ NP +LQP LQ+LG+
Sbjct: 267 EALRNNPQMIQ----------------------------LRQLVQQNPNLLQPFLQQLGQ 298
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEER 387
NP+L+ + + T + + E EG + + Q V V+ EER
Sbjct: 299 SNPNLLTQLTSNPTLLMSFLAEGAEGLDDDSSLPPGMMGGAGAGGPEDQTQYVQVSQEER 358
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH-MHEFED 430
+AIERL +GF+R LV++ +FAC+KNEE+AANYL++H +FE+
Sbjct: 359 DAIERLVGLGFERQLVVQAYFACDKNEEMAANYLIEHGFDDFEE 402
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/169 (61%), Positives = 117/169 (69%), Gaps = 10/169 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D +S VKKNIETVQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+KSK +S ST S AP +A TS+A PTST P + S A
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSAA-PTSTPPVSVSPQAPAATA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
P + + P APAP + SDVYGQAASNLVAG
Sbjct: 120 APPASVAAPSPAPAPAPISSATATEG---------SDVYGQAASNLVAG 159
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 149/272 (54%), Gaps = 58/272 (21%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV+G+ LEA V QI+ MG ++RE V+ A+RAA+NNP+RAVEYL +GIPE +
Sbjct: 129 SGLVSGAELEAAVTQIMTMG---FEREQVMNAMRAAFNNPDRAVEYLLTGIPETS----- 180
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGAG-TLDFLR 281
QA A A P A A G N L+LFP+G+P+M G +G G LDFLR
Sbjct: 181 -------QAPPAAAAPAADAPDASAALGG---NALNLFPEGIPDMAGDRSGDGQMLDFLR 230
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
++ QFQA+R MVQ P ILQPML EL +QNP
Sbjct: 231 DNP----------------------------QFQAIRAMVQGQPHILQPMLAELQRQNPQ 262
Query: 342 LMRLIQEHQTDFLRLINEPV---------EGGEGNVLGQLASAMPQA-VTVTPEEREAIE 391
L LI +Q +FL L+NEP+ EG V +L A + ++ EERE I+
Sbjct: 263 LYHLINNNQEEFLALLNEPLPENIRDLMAEGFGDGVAPELQGDDDGAQIELSQEERETID 322
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
RL +GF + +E + AC+KNE+LAANYLL+
Sbjct: 323 RLAGLGFPLEICVEAYLACDKNEQLAANYLLN 354
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 205/464 (44%), Gaps = 96/464 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVA------------- 224
++ G + RE V +A+RAA+NNP+RAVEYL +GIP P PV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVTLPTNAPSTVNPSA 212
Query: 225 -------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+ LRN+ Q+ LR +VQ NP +LQP LQ+LG+
Sbjct: 267 EALRNNPQMIQ----------------------------LRQLVQQNPNLLQPFLQQLGQ 298
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEER 387
NP+L+ + + T + + E EG + + Q V V+ EER
Sbjct: 299 SNPNLLTQLTSNPTLLMSFLAEGAEGLDDDPSLPPGMMGGAGAGGPEDQTQYVQVSQEER 358
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH-MHEFED 430
+AIERL +GF+R LV++ +FAC+KNEE+AANYL++H +FE+
Sbjct: 359 DAIERLVGLGFERQLVVQAYFACDKNEEMAANYLIEHGFDDFEE 402
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 211/429 (49%), Gaps = 95/429 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 80 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 119 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 164 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------- 197
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ P AP T N P++ N NAG + + L + Q + L + L
Sbjct: 198 -ENPVAPNHT---NITPVN------SNASLNAGLTSSEDLSSEQLPGNLESLRTNPL--- 244
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
FQ LR++VQ +P+IL +L +G+ NP +++LI E+Q +F+R++
Sbjct: 245 -------------FQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM--- 288
Query: 361 VEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
E + + +G+ + M + +TP+E E++ERL+A+GF R V+E + C KNEELAAN
Sbjct: 289 -ERTDSDEVGETSQFPMQTTIQLTPQEAESVERLQALGFPRNAVIEAYLICEKNEELAAN 347
Query: 420 YLLDHMHEF 428
YLL++ +F
Sbjct: 348 YLLENSADF 356
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 218/482 (45%), Gaps = 114/482 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++KK I +G++ P +Q LI+ G +L D +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLP-EKQKLIYAGVILVDDRKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVMLT+ SS +ST ++ A+ S T+ +PT T+ +PA A
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAEKPSEK-KTNPEPTPTAPSPAAVSA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP S A + +P +P + +D +A S+L+ G TV ++
Sbjct: 119 P---VPASVASSGASG-TTSDSPNTETTVSPTAPSTD-QTRAESSLLMGEEYNRTVSSMV 173
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V RA+ A++NNPERAVEYL +GIP + + Q
Sbjct: 174 EMG---YPREQVERAMAASFNNPERAVEYLINGIPAE--------------------EDQ 210
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
P S PN D P +G T D
Sbjct: 211 LFNDTDPTSQSNPNPRVADASSINAP-----SGRSTAD---------------------- 243
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+ + R QF +R+++ NPQ+L +LQ++G+ NP L++LI E+Q FL ++N+P
Sbjct: 244 ---PFEFLRSQPQFLQMRSLIYQNPQLLDAVLQQIGQTNPALLQLISENQDAFLNMLNQP 300
Query: 361 VEG---------GEG------NVLGQLASAMPQAVT------------------------ 381
+EG EG V Q ++A Q T
Sbjct: 301 LEGESSARGTARSEGLASGLLEVAAQRSAAGAQETTSAARASVPGSPSATEGGASERETA 360
Query: 382 -------------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
+ P++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F
Sbjct: 361 EQQQLAEGVATIRLNPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSF 418
Query: 429 ED 430
+D
Sbjct: 419 DD 420
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 212/441 (48%), Gaps = 90/441 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ +F++EV+ KV +VK+ I +G Y + Q LIH GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K++E F+VVM++K K ++ A V+ AP A + P + T S P
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVP----- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV P A VY A SNL +
Sbjct: 113 PADSVDTPVNPETLTTTTALATGA-------------VYENAVSNL-------------M 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQ-AGNPPAQ 238
+MG + R+ V A+R A+NNP+RA EYL T +P VAR A +
Sbjct: 147 EMG---FPRDQVTHAMRTAFNNPDRAAEYLM------TGIPDSVAREFASTAPVLSDTTT 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGL-----PNMGSNA----GAG---TLDFLRNSQQV 286
T + A P + ++LF G+ A GAG TL FLRNS Q
Sbjct: 198 TPSSTAAPATPAAPAATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQ- 256
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
FQ LR +V + PQ+LQP+LQ++G+ NP L++LI
Sbjct: 257 ---------------------------FQQLRQLVHSQPQLLQPLLQQIGQTNPELLQLI 289
Query: 347 QEHQTDFLRLINEPVEGGEGNVL----GQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 402
++Q FL+++NE E G GN+ +AM Q +TVT EE EAI RL A+GFDR L
Sbjct: 290 SQNQGQFLQMLNEGSEEG-GNIASAEGADDTAAMGQQITVTTEENEAILRLAALGFDRGL 348
Query: 403 VLEVFFACNKNEELAANYLLD 423
LE +FAC+KNEELAANYL D
Sbjct: 349 ALEAYFACDKNEELAANYLFD 369
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 200/461 (43%), Gaps = 115/461 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTT 58
MK+ +KTL FEIE+ K + ++ ++G A L+ H+G+VL+D T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E ++ E+ FVVVM K+K + + + APAN T++ P T
Sbjct: 61 VSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A VP S+P LV G+ LE +++
Sbjct: 121 TA---EVPVSSP----------------------------------GLVVGAELEKAIEE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R+ + ALRAA+NNP+RAVEYL +GIPE V A +A A
Sbjct: 144 LQAMG---FPRDQCVAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAAP 200
Query: 239 TQAQQPAAPAPTS-------------------GPNANPLDLFPQGLP------------N 267
A T+ + PL+LFPQG+P
Sbjct: 201 GADAAAANAVRTAEGATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAEE 260
Query: 268 MGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQI 327
TL FLR++ Q FQA+R MVQ NP I
Sbjct: 261 EAQEGEVNTLAFLRDNPQ----------------------------FQAIRAMVQGNPSI 292
Query: 328 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-----GGEGNVLGQLASAMPQAVTV 382
LQPML EL +QNP L LI +Q +FL+L+NEP + GEG + + + +
Sbjct: 293 LQPMLGELQRQNPQLYHLINSNQEEFLQLLNEPSDFEAQGMGEGEM---------EQIEL 343
Query: 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
+ EE EA ERL A+GF +E + AC+KNEE+AANYL +
Sbjct: 344 SKEENEACERLMALGFTMEQCVEAYIACDKNEEMAANYLFE 384
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 211/429 (49%), Gaps = 95/429 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 59 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 98 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------- 176
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ P AP T N P++ N NAG + + L + Q + L + L
Sbjct: 177 -ENPVAPNHT---NITPVN------SNASLNAGLTSSEDLSSEQLPGNLESLRTNPL--- 223
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
FQ LR++VQ +P+IL +L +G+ NP +++LI E+Q +F+R++
Sbjct: 224 -------------FQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM--- 267
Query: 361 VEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
E + + +G+ + M + +TP+E E++ERL+A+GF R V+E + C KNEELAAN
Sbjct: 268 -ERTDSDEVGETSQFPMQTTIQLTPQEAESVERLQALGFPRNAVIEAYLICEKNEELAAN 326
Query: 420 YLLDHMHEF 428
YLL++ +F
Sbjct: 327 YLLENSADF 335
>gi|413954954|gb|AFW87603.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 104
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREA 389
MLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREA
Sbjct: 1 MLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREA 60
Query: 390 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
I+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 61 IQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 101
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 94/113 (83%), Gaps = 2/113 (1%)
Query: 320 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMP 377
MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMP 60
Query: 378 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 61 HSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 113
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 182/385 (47%), Gaps = 87/385 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P +A + G +P A A +
Sbjct: 231 GDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTTTT 270
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
+G L+FLRN QFQ +R ++Q NP +L +
Sbjct: 271 SGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPAL 302
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRL 356
LQ++G++NP L++ I +HQ F R
Sbjct: 303 LQQIGRENPQLLQQISQHQEHFFRC 327
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 206/451 (45%), Gaps = 87/451 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K IE++P + V K+ + V+G +V Q ++ GKVL+D T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K ++ PT P ++ TPAP
Sbjct: 58 STKIKADDQVIFMISK---------------------VAAKKPT---PAASTPTPAPAAQ 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P Q +SAP + PAPAP+ A P P AS GS E + I
Sbjct: 94 PTQPTAQSAPVQPSTRTVPAPAPSSQSAQPTPSQQPEQAGDFDASTFATGSAREKAIANI 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI-------------PEQTAVPPVARA 226
++MG ++R V +ALRAA+NNP+RAVEYL +GI TAV
Sbjct: 154 MEMG---YERPQVEQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVEESGEQ 210
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 285
+ G G A QP+AP+ T A DLF G N G+G+ S
Sbjct: 211 TEGSNTG-----ATATQPSAPSGTEEHSTAESGDLFAAAAAAAGGNPGSGS------SPG 259
Query: 286 VSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 345
S S + + R +V+ NP++L+P+L++L +Q P L L
Sbjct: 260 ASHRTGGAPSGGGLDQI---------------REIVRTNPEMLEPLLEQLSQQYPQLNGL 304
Query: 346 IQEHQTDFLRLI----NEPVEGGEGNVLGQLASAMPQA-------VTVTPEEREAIERLE 394
IQ++ +F+ +I NE GEG LG PQA V +T E++ AI RL
Sbjct: 305 IQQNPEEFINMILNGVNEDELSGEG--LG--TEVAPQAGEDGTVEVPITEEDQAAINRLV 360
Query: 395 AMGFDRALVLEVFFACNKNEELAANYLL-DH 424
+GF+ L ++V+FAC+KNEELAAN L DH
Sbjct: 361 ELGFESNLAIQVYFACDKNEELAANILFNDH 391
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 163/340 (47%), Gaps = 75/340 (22%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLEF 206
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
LRN QFQ +R ++Q NP +L +LQ++G++N
Sbjct: 207 LRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGREN 238
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGG---------------EGNVLGQLASAMPQAVTVTP 384
P L++ I +HQ F++++NEPV+ G + + S + VTP
Sbjct: 239 PQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTP 298
Query: 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 299 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 338
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 164/341 (48%), Gaps = 76/341 (22%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P +A + G +P A A + +G L+F
Sbjct: 167 VDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTTTTSGGHPLEF 206
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
LRN QFQ +R ++Q NP +L +LQ++G++N
Sbjct: 207 LRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGREN 238
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGG----------------EGNVLGQLASAMPQAVTVT 383
P L++ I +HQ F++++NEPV+ G + + S + VT
Sbjct: 239 PQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVT 298
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 299 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 339
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 163/340 (47%), Gaps = 75/340 (22%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 40 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 99
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 100 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 156
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 157 VDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLEF 196
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
LRN QFQ +R ++Q NP +L +LQ++G++N
Sbjct: 197 LRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGREN 228
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGG---------------EGNVLGQLASAMPQAVTVTP 384
P L++ I +HQ F++++NEPV+ G + + S + VTP
Sbjct: 229 PQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTP 288
Query: 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 289 QEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 328
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 199/428 (46%), Gaps = 90/428 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+T++ T EIEV+ V +K+ IE AS+Q LI G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+++K GA ++ +Q + ++ T P TT+
Sbjct: 59 DIGIKEGERLVVLVSK------GAIQQKSSEISQTKNIGNSTSAQTTPVTTN-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + Y +AS L+ G+ LE T+ I+
Sbjct: 105 --------------------------TGVIPNNCDQNTYESSASALITGTELETTINNIV 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R VI A+RAA+NNP+RAVEYL SGIP P GQ +
Sbjct: 139 NMG---FERNQVIAAMRAAFNNPDRAVEYLTSGIP-----LPGIIIQGQGQGQGQSEVSL 190
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+Q P + N + N + G LD LR +
Sbjct: 191 SQAATTPINPEMSDINQIS------TNASGDTVTGALDSLRTN----------------- 227
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+F Q LR +VQ +P+IL +L +G+ NP +++LI E+Q +F+RL+
Sbjct: 228 PIF-----------QQLRMVVQQDPRILPELLARVGQTNPEILQLITENQEEFIRLM--- 273
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
E + + +G++ A +V +T +E EA+ERL+ +GF R LE F C KNEELAANY
Sbjct: 274 -ERTDSDDIGEINGAT--SVYLTQQEAEAVERLQGLGFPRNAALEAFLICEKNEELAANY 330
Query: 421 LLDHMHEF 428
L+++ +F
Sbjct: 331 LIENSADF 338
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 139/499 (27%), Positives = 217/499 (43%), Gaps = 134/499 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++K+ I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 ENKVAENSFVVVMLTKS-------KVSSSGASTVSAAPA-NQAQTTS-----------SA 101
KV E F+VVMLT+ +++ VS+ A QA+ T+ S
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG- 160
P + +++S+ A T E A +PAPA + + V ++
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGSTGAGSPAPASTTGSTTDYSSIDLVGELANT 179
Query: 161 ----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+A SNL+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPQ 236
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
+ + +A N + PA A A+P
Sbjct: 237 EENLFTPGDDEESSRASNIHQGAASDLPAESA------ADP------------------- 271
Query: 277 LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELG 336
+FLR+ Q F +R+++ NP +L +LQ++G
Sbjct: 272 FEFLRSQPQ----------------------------FLQMRSLIYQNPHLLHAVLQQIG 303
Query: 337 KQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVLGQ----------LASAMPQAVT-- 381
+ NP L++LI E+Q FL ++N+P+E LG+ L S+ QA T
Sbjct: 304 QTNPALLQLISENQDAFLNMLNQPLEDEVATNAQRLGRTQSNSSRTENLTSSASQAATTE 363
Query: 382 --------------------------------------VTPEEREAIERLEAMGFDRALV 403
+TP++++AIERL+A+GF ALV
Sbjct: 364 GQRSAAGSENQPISVALEGDGTVSAERNVPTESLATIRLTPQDQDAIERLKALGFPEALV 423
Query: 404 LEVFFACNKNEELAANYLL 422
L+ +FAC K+EELAAN+LL
Sbjct: 424 LQAYFACEKDEELAANFLL 442
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 203/469 (43%), Gaps = 117/469 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE + E V ++KK I V+GS+ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SS+ S + A Q + + P ++ T+ S T +
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNTQPLPSEITSNSDTFCGSTN 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A + +VS + +A SNL+ G TVQ ++
Sbjct: 120 QPIII-----------SATNETKQRNDLVGELENVS-LQSRAESNLLMGDEYTQTVQSLI 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPPAQT 239
+MG + RE V RA+ A++NNPERAVEYL +G+P E + V S NP
Sbjct: 168 EMG---YPREQVERAMSASFNNPERAVEYLINGLPAEDENIFHVDEEST-----NPSLVQ 219
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q + T + D F +FLR+ Q F SL++
Sbjct: 220 SGPQNISALSTGHSTGSSSDPF----------------EFLRSQPQ----FLQMRSLIY- 258
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
NP +L +LQ++G+ NP L++LI E+Q FL ++N+
Sbjct: 259 -----------------------QNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQ 295
Query: 360 PVEGGEGNVLGQLASAMPQAVT-------------------------------------- 381
P+E G A A+P+ T
Sbjct: 296 PIENDSG-----AADAVPRTSTNRRRRVFSSELEGAVAAHRLGTNELRENQTGGNDEPFE 350
Query: 382 --------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ +E+EAIERL+A+GF ALVL+ +FAC KNEELAAN+LL
Sbjct: 351 HPGVATIRLNSQEQEAIERLKALGFPEALVLQAYFACEKNEELAANFLL 399
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 194/431 (45%), Gaps = 116/431 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVV+M+ + K V A PA S+ P++ Q +Q T
Sbjct: 61 EVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIPAAAQV---TTV 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV +++ PAAP + P E T Q I+
Sbjct: 106 TPASVTDNS--PAAPQNSDGLTPEQ---------------------------EETAQAIV 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 137 AMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------QES 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A+ G LDFLR
Sbjct: 180 AEHEE-----------------------GERGQGLGLDFLRQ------------------ 198
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
L QF+ LR +VQ+NP +L ++Q++ + NP LM IQ +Q +F+ L+N
Sbjct: 199 ----------LPQFEQLRELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNG 248
Query: 361 VEGGEGNVLGQLA-SAMPQ---AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
G G G+++ SA Q A+ VT ER+AI RL++MGF LV+E +FAC+KNE+L
Sbjct: 249 SVGSGGGGGGRVSPSAGEQRQVAIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDL 308
Query: 417 AANYLLDHMHE 427
AANY+L M E
Sbjct: 309 AANYILARMDE 319
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 184/384 (47%), Gaps = 84/384 (21%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPAPA---PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEA 174
+ PAPA A PA PA PV SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 177
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
Q+ A +SG G P L+FLRN Q
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQ---- 212
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
FQ +R ++Q NP +L +LQ++G++NP L++ I +H
Sbjct: 213 ------------------------FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQH 248
Query: 350 QTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 400
Q F++++NEPV+ + + S + VTP+E+EAIERL+A+GF
Sbjct: 249 QEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPE 308
Query: 401 ALVLEVFFACNKNEELAANYLLDH 424
LV++ +FAC KNE LAAN+LL
Sbjct: 309 GLVIQAYFACEKNENLAANFLLQQ 332
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 134/475 (28%), Positives = 204/475 (42%), Gaps = 120/475 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QTPAP 117
V + F+VVMLT+ SS+ NQ S ST + S +
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSN---------PNQLSVKESDKLISTDDSKDSMPGEEANH 110
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ +P E + P+ P A A + S +A SNL+ G TV
Sbjct: 111 SNSPCTKNTEESVLPSETTPLSTDNLIGDLAQASLQS------RAESNLLMGEEYNQTVL 164
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+++MG + RE V RA+ A+YNNPERAVEYL +GIPE+ + ++ NP
Sbjct: 165 SMVEMG---YPREEVERAMAASYNNPERAVEYLINGIPEEEGTID----NGVNESTNPSV 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
Q + + P + D F +FLR
Sbjct: 218 IASGPQTVSASSVERPAESNSDPF----------------EFLRRQP------------- 248
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++
Sbjct: 249 ---------------QFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNML 293
Query: 358 NEPVE------------------GGEGNVLGQLASAMPQA-------------------- 379
N+P+E +GNV +S + A
Sbjct: 294 NQPIERESESSTTVPGVSSAGTHSTQGNVSNLFSSDLGAASAQRSTAGTSAAQQSGSSAE 353
Query: 380 ------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ + ++++AIERL+A+GF ALVL+ +FAC KNEELAAN+LL
Sbjct: 354 HEDLEQPLGASTIRLNRQDQDAIERLKALGFPEALVLQAYFACEKNEELAANFLL 408
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 183/430 (42%), Gaps = 119/430 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K P A
Sbjct: 83 EVMIDPSKFVVVMIARKK--------------------------------------PIGA 104
Query: 121 PPQSVPE--SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P +S P+ + PA AP P+ + D+ + E T Q
Sbjct: 105 PVESTPQPSNLQIPAGAQVTTAPVSVADSGPSTPQNPDDLTPEQ----------EETAQA 154
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 155 IVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------Q 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
A+ G A LDFLR
Sbjct: 198 ESAEHEE-----------------------GERAQGLGLDFLRQ---------------- 218
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
L QF+ LR +VQ+NP IL ++Q++ + NP LM IQ +Q +F+ L+N
Sbjct: 219 ------------LPQFEQLRELVQSNPAILPQIIQQIAQSNPALMEAIQNNQEEFVNLLN 266
Query: 359 EPVEGGEGNVLGQLASAMPQ-AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
G + A Q A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LA
Sbjct: 267 NGSVSSGGGGVAPSAGEQRQVAIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLA 326
Query: 418 ANYLLDHMHE 427
ANY+L M E
Sbjct: 327 ANYILARMDE 336
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 221/490 (45%), Gaps = 134/490 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQV 286
G + N Q P AP P S P + LP S+ +FLR+
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQP-- 260
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
QF +R+++ NP +L +LQ++G+ NP L++LI
Sbjct: 261 --------------------------QFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLI 294
Query: 347 QEHQTDFLRLINEPVEG-------------------------------GEGNVLGQLASA 375
E+Q FL ++N+P+EG EG V Q +SA
Sbjct: 295 SENQDAFLNMLNQPIEGESASGNNTQRSTPPRIQSFPTRTESLPSSATEEGPVANQRSSA 354
Query: 376 MPQA-----------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
A + + ++++AIERL+A+GF ALVL+ +FAC K
Sbjct: 355 GGIAADQLQRRDVADREVTEQSAGIATIRLNAQDQDAIERLKALGFPEALVLQAYFACEK 414
Query: 413 NEELAANYLL 422
+EELAAN+LL
Sbjct: 415 DEELAANFLL 424
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 221/490 (45%), Gaps = 134/490 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQV 286
G + N Q P AP P S P + LP S+ +FLR+
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQP-- 260
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
QF +R+++ NP +L +LQ++G+ NP L++LI
Sbjct: 261 --------------------------QFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLI 294
Query: 347 QEHQTDFLRLINEPVEG-------------------------------GEGNVLGQLASA 375
E+Q FL ++N+P+EG EG V Q +SA
Sbjct: 295 SENQDAFLNMLNQPIEGESASGNNTQRSTPPRIQSFPTRTESLPSSATEEGPVANQRSSA 354
Query: 376 MPQA-----------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
A + + ++++AIERL+A+GF ALVL+ +FAC K
Sbjct: 355 GGIAADQLQRPDVADREVTEQSAGIATIRLNAQDQDAIERLKALGFPEALVLQAYFACEK 414
Query: 413 NEELAANYLL 422
+EELAAN+LL
Sbjct: 415 DEELAANFLL 424
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 184/384 (47%), Gaps = 84/384 (21%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEA 174
+ PAPA A PA PA PV SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGV 177
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
Q+ A +SG G P L+FLRN Q
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQ---- 212
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
FQ +R ++Q NP +L +LQ++G++NP L++ I +H
Sbjct: 213 ------------------------FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQH 248
Query: 350 QTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 400
Q F++++NEPV+ + + S + VTP+E+EAIERL+A+GF
Sbjct: 249 QEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPE 308
Query: 401 ALVLEVFFACNKNEELAANYLLDH 424
LV++ +FAC KNE LAAN+LL
Sbjct: 309 GLVIQAYFACEKNENLAANFLLQQ 332
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 92/113 (81%), Gaps = 2/113 (1%)
Query: 320 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMP 377
MVQANPQILQPMLQELGKQNP L+RLI E+Q +FLRLINE G + LGQLA P
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDALGQLAGGYP 60
Query: 378 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
Q+V VTPEEREAIERLE MGF RALV+E F AC+KNE+LAANYLL++ +E++D
Sbjct: 61 QSVNVTPEEREAIERLEGMGFSRALVIEAFLACDKNEQLAANYLLENANEYDD 113
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 223/446 (50%), Gaps = 84/446 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++ A+ S++ A + P T + P +
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVN-------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
APP PA P+PA + + ++ +D S L+ G+ + + Q+L
Sbjct: 110 --------APPLQTPA-TPSPAGGASSGASSGATFND-----PSALLMGNQGQEAITQML 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAAY NP+RA+EYL +GIP++ P SA PA T+
Sbjct: 156 AMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPDE---PEREAPSAPAAGSARPAATE 209
Query: 241 A-------------QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
+Q AA A G + G + S G+L+FLRN+
Sbjct: 210 GASESQVQESLNLFEQAAAQASGGGSGRSRGAGAGAGAGSGESAGSLGSLEFLRNNPH-- 267
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
FQ LR +VQ PQ+L+P+LQ++G NP L +LI
Sbjct: 268 --------------------------FQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIG 301
Query: 348 EHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVL 404
++Q FL+L++E V+ + +P Q+++VT EER+AIERL +GF R V+
Sbjct: 302 QNQEQFLQLLSEDVDD---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVI 352
Query: 405 EVFFACNKNEELAANYLLDHMHEFED 430
+ +FAC+KNEELAAN+L D E ED
Sbjct: 353 QAYFACDKNEELAANFLFDQPDENED 378
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 200/426 (46%), Gaps = 89/426 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K L+ F++E+ + V +K+ ++ +GS+ Y A Q LI+ GK+L D T +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + FVVVM+ SK + + +T + A+ A TS + ST +T PA
Sbjct: 60 DCNIDSKKFVVVMV--SKATGAVTATSATNTASAASATSVSDTKSTPSVSTPMIPADN-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S+P + P P+P A P ++ASN E T+Q I+
Sbjct: 116 --SSIPIAQPRVVEQLPSPVETRASEP-------------ESASN----DETERTIQNIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAGNPPA 237
DMG ++R V ALRA++NNP+RAVEYL +GIP++ P R+ +G+
Sbjct: 157 DMG---YERPQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTISPNRSVLSEDSGDLSG 213
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+Q P + P L FLRN
Sbjct: 214 SSQ-------VPATDP-----------------------LAFLRNQP------------- 230
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
FQ +RT+VQ NP++L +LQ++G+ NP L+++I +Q F+R++
Sbjct: 231 ---------------TFQQMRTVVQQNPELLNSVLQQIGQTNPALLQMISNNQEAFVRML 275
Query: 358 NEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
NEP EG A V V+ +++EAI+RL+A+GF V++ +FAC KNE +
Sbjct: 276 NEPNEGAAAAPAAASRGPADGFEVPVSTQDKEAIDRLKALGFPEHQVVQAYFACEKNENM 335
Query: 417 AANYLL 422
AAN LL
Sbjct: 336 AANLLL 341
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 204/433 (47%), Gaps = 60/433 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+ PP A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGM------PPEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+TQ P + D P G
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLG--------------------------------- 252
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
R F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++
Sbjct: 253 ---------ALRHHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEML 303
Query: 358 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
GE G A P + +T EE EA++RLE++GF R +E + AC++NEE+A
Sbjct: 304 QSDQGEGETGAAGTGGFAAPGIIQMTAEEMEALQRLESLGFSRHQAVEAYLACDRNEEMA 363
Query: 418 ANYLLDHMHEFED 430
ANYL +++++ D
Sbjct: 364 ANYLFENLNDLGD 376
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 87/102 (85%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS+ P
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVP 102
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 158/331 (47%), Gaps = 70/331 (21%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P SA PA PA AP + S+ S+++ A S L
Sbjct: 53 SITPASTTASSEPAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LEFLRN 208
Query: 283 SQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHL 342
QFQ +R ++Q NP +L +LQ++G++NP L
Sbjct: 209 QP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQL 240
Query: 343 MRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERL 393
++ I +HQ F++++NEPV+ + + S + VTP+E+EAIERL
Sbjct: 241 LQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERL 300
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 301 KALGFPEGLVIQAYFACEKNENLAANFLLQQ 331
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 212/462 (45%), Gaps = 117/462 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 58 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 117 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 153 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 209
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 210 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 254
Query: 274 AG--TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
G LDFLRN+ FQ LR +VQ PQ+L+P+
Sbjct: 255 EGLPNLDFLRNNPH----------------------------FQQLRQLVQQQPQMLEPI 286
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEERE 388
LQ++ NP + +LI +++ FL+L++E +G A+P + VT EER+
Sbjct: 287 LQQVAAGNPQIAQLIGQNEEQFLQLLSEEGDG-----------ALPPGTHQIHVTEEERD 335
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 336 AIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 377
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 204/435 (46%), Gaps = 87/435 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK-KNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M V ++ K + ++V+P D V +K KN E G D Y Q +I+ GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E++F++ M++K KV ++ A+ +AAP A + P T+ +V
Sbjct: 57 ESLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSR-----SV 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A P + P P A S+ D+ ++ A + + + +
Sbjct: 112 ATPGA-------PTNSGNVVGNTETPTTGGADASTTGDIGAESGPAASATAAVTTAINNM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V A+RAAYNNPERAVEYL +GIP+
Sbjct: 165 VDMG---YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVI-------------------- 201
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA----GAGTLDFLRNSQQVSMMFYLFAS 295
++ P S + DLF + + G A LDFLR++
Sbjct: 202 -GEEADDDVPESNTDT---DLFAEAVAQQGQGASVAPNTSALDFLRDNP----------- 246
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
QF +R MVQ P +L+P++Q+L NP L LI ++ FL
Sbjct: 247 -----------------QFIEMRRMVQQQPHLLEPLIQQLAASNPQLAALITQNSEAFLH 289
Query: 356 LINEPVEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNK 412
L+ E +E + + +P+ T VTPEE +AIERL A+GF+R LV++ +FAC+K
Sbjct: 290 LLGEGLE--------EGSGGVPEGTTEIQVTPEESDAIERLAALGFERNLVIQAYFACDK 341
Query: 413 NEELAANYLLDHMHE 427
NEE+ ANYLL+H ++
Sbjct: 342 NEEVTANYLLEHGYD 356
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 211/459 (45%), Gaps = 87/459 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ + + P + Q LI+ G++L D L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 ENKVAENSFVV--VMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E FVV VM+TK K S+ A+T +APA+ TSS T Q T A
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYG 160
T P P S + PAPA A A PA PV SS S+++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQ 217
A S LV G E V +I MG ++ E VI A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P AS G + A A A +SG + L
Sbjct: 238 VVVDPHQAASTGVPQSSTLAAVAATTTATTTTSSGXHP---------------------L 276
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FL N Q FQ +R ++Q N +L +LQ +G
Sbjct: 277 EFLWNQPQ----------------------------FQQMRQIIQQNTSLLPALLQXIGG 308
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---------VTVTPEERE 388
+NP L++ I +H+ F++++NEPV +G G + A + VTP+E+E
Sbjct: 309 ENPQLLQQISQHKEHFIQMLNEPVXEADGRGGGGGGGSGGIAEPGNGPMNYIQVTPQEKE 368
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
AIER G LV++ +FAC KN+ LAA++LL +
Sbjct: 369 AIER---XGIPEGLVIQAYFACEKNKNLAADFLLQQTFD 404
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 209/442 (47%), Gaps = 82/442 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P D +S VK+ I +G D A+ Q LI+ GK+L+D T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E FVV M +S P + ++++ +++ P TPA +
Sbjct: 58 DYKIEEKGFVVCM-------------ISNKPKAASSSSAAGSSSASTPVKAPSTPAQSSV 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP SAP A + + + A P P +V G+ I+
Sbjct: 105 PPTP---SAPAQAVTGSSTSTSAAVPETPTPAGAV-------------GTTFNDPEDAIV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA----GGQAGNPP 236
+M G ++R + RA+RAA+ NP+RAV+YL +GIPE A++S A +
Sbjct: 149 NMMGMGFERSEIERAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAA 208
Query: 237 AQTQAQQPAAPAPTSGPNANP--LDLFPQ---------GLPNMGSNAGA---GTLDFLRN 282
A PA SG A P ++LF G + G + GA G LDFLRN
Sbjct: 209 RPAAATAPATGGSASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRN 268
Query: 283 SQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHL 342
+ Q + R +VQ PQ+L+P+LQ++G NP L
Sbjct: 269 NPQFQQL----------------------------RQVVQQQPQMLEPILQQVGMGNPQL 300
Query: 343 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 402
I + FLRL++E +G L ++ ++VTPEE +AIERL +GFDR +
Sbjct: 301 AATISSNPEAFLRLLSEDPADEDGGALPPGSNH----ISVTPEESDAIERLCRLGFDRDM 356
Query: 403 VLEVFFACNKNEELAANYLLDH 424
V++ +FAC+KNEELAAN+L +
Sbjct: 357 VIQAYFACDKNEELAANFLFEQ 378
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 211/462 (45%), Gaps = 117/462 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
V VK LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 83 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 141
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 142 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 177
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 178 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 234
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 235 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 279
Query: 274 AG--TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
G LDFLRN+ FQ LR +VQ PQ+L+P+
Sbjct: 280 EGLPNLDFLRNNPH----------------------------FQQLRQLVQQQPQMLEPI 311
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEERE 388
LQ++ NP + +LI +++ FL+L++E +G A+P + VT EER+
Sbjct: 312 LQQVAAGNPQIAQLIGQNEEQFLQLLSEEGDG-----------ALPPGTHQIHVTEEERD 360
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 361 AIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 402
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 132/472 (27%), Positives = 201/472 (42%), Gaps = 114/472 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +GS+ Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ S + NQ S TST S+ P
Sbjct: 60 SYNVDEKKFIVVMLTRDS---------SYSNRNQLSVKESDKLTSTDD---SRHSMPCEE 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S S + P P+ + + + +A SNL+ G TV ++
Sbjct: 108 ANHSNSPSCRNTDDSVLSRETRPLPSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMV 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 EMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNGLNESTNPSLIPS 220
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
Q A+ T P +++ + +FLR+ Q
Sbjct: 221 GPQTASATSTERP----------------ADSNSDPFEFLRSQPQ--------------- 249
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
F +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P
Sbjct: 250 -------------FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQP 296
Query: 361 VEGG-----------------------------EGNVLGQLASAMPQA------------ 379
+E EG Q ++A A
Sbjct: 297 IERESESVATVPHVSNARTPSTLDNVSLFSPDLEGATSAQRSTAGTSAAQQIGSAADNED 356
Query: 380 ---------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 357 LEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 408
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 194/432 (44%), Gaps = 82/432 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KT + F+I++ PE+ V +K+ IE+ +G D +P Q LI+ G++LKD T L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E V+ SK ++ VS++P A T ++ P S + TS PA
Sbjct: 61 EYNIEEKDSVL-----SKPATD--FLVSSSPGTPASTPAAVTPASRR---TSSEPA---- 106
Query: 121 PPQSVPESAPPPAAPAPAP-APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PE PP A AP A P A +S S++ A L G + + V +I
Sbjct: 107 -----PEQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEI 161
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG +++ VI ALRA++N+P RAVEYL +GIP VA G PP+
Sbjct: 162 MSMG---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLPRAASMGAPPSPA 218
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
A + A S P PL+ +R +
Sbjct: 219 SA---TSTAMASSPEGTPLEF------LQNQLQFQQLRQTIRQNP--------------- 254
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
S +L Q LR P +LQ LI ++Q F+++++E
Sbjct: 255 ------SLLPMLLQQLGLR-----GPHLLQ---------------LISQYQEHFIQMLHE 288
Query: 360 PVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
PV G Q V VTP+EREAIERL+A+GF LV++ +FAC
Sbjct: 289 PVPEAGGQSGVGGAGDAGTAQAGHGQANYVRVTPQEREAIERLKALGFPEGLVIQAYFAC 348
Query: 411 NKNEELAANYLL 422
KNE LAAN+LL
Sbjct: 349 EKNETLAANFLL 360
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 145/444 (32%), Positives = 215/444 (48%), Gaps = 90/444 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ P+PA A S S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPS-TPSPAAAGTSQAQGSAFNDPSALLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A + ++
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQSAAPES- 209
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQVSMM 289
AP++G + P++LF G G +L+FLRN+
Sbjct: 210 -------APSAGDD-EPVNLFEAAAQAGGQEGGGRGARAAGGAELPSLEFLRNNPH---- 257
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
FQ LR +VQ PQ+L+P+LQ++ NP + +LI ++
Sbjct: 258 ------------------------FQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQN 293
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEV 406
+ FL+L++E + E A+P T VT EER+AIERL +GF R LV++
Sbjct: 294 EEQFLQLLSEEPDDDE---------ALPPGTTQIHVTEEERDAIERLCRLGFSRDLVIQA 344
Query: 407 FFACNKNEELAANYLLDHMHEFED 430
+FAC+KNEELAANYL ++ + ED
Sbjct: 345 YFACDKNEELAANYLFENPDDPED 368
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 198/442 (44%), Gaps = 124/442 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-----------DKVSDVKKNIETVQGSDVYPASQQMLIHQ 49
M + KT+ FEIE+ P K+ +VK I +G YP Q LI+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT 109
GKVL D T+EE + + FVV+M+ + K V A PA S+ P++ Q
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIP 108
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+Q T P SV +++ PAAP S +SD G
Sbjct: 109 AAAQV---TTVTPASVTDNS--PAAPQN---------------SGISD--GLTPEQ---- 142
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + G
Sbjct: 143 ---EETAQAIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------G 188
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
G Q A+ G LDFLR
Sbjct: 189 GH------QESAEHEE-----------------------GERGQGLGLDFLRQ------- 212
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
L QF+ LR +VQ+NP +L ++Q++ + NP LM IQ +
Sbjct: 213 ---------------------LPQFEQLRELVQSNPALLPQIIQQIAQSNPALMEAIQNN 251
Query: 350 QTDFLRLINEPVEGGEGNVLGQLA-SAMPQ---AVTVTPEEREAIERLEAMGFDRALVLE 405
Q +F+ L+N G G G+++ SA Q A+ VT ER+AI RL++MGF LV+E
Sbjct: 252 QEEFVNLLNNGSVGSGGGGGGRVSPSAGEQRQVAIHVTEAERDAINRLKSMGFPEQLVIE 311
Query: 406 VFFACNKNEELAANYLLDHMHE 427
+FAC+KNE+LAANY+L M E
Sbjct: 312 AYFACDKNEDLAANYILARMDE 333
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 218/461 (47%), Gaps = 90/461 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPPPAAPAPAPAPAPAPAPAPAPV-----------------SS 154
P V P SV P +APP A+ P A PAPV +S
Sbjct: 121 P-VEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEAS 178
Query: 155 VSD---VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
++D + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 179 LTDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLL 235
Query: 212 SGIPEQTAVPP--VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
+GIP ++ PP V R + P Q PAA S G
Sbjct: 236 TGIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAES----------------GG 279
Query: 270 SNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQ 329
+ A A L+FLR+ Q M + + R NPQ+LQ
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALQQQLGR-------------DNPQLLQ 326
Query: 330 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA 389
+ Q HQ F++++N A+ + VTP+E+EA
Sbjct: 327 QITQ---------------HQERFVQMLN-------EPEAEAPAAPQTNYIQVTPQEKEA 364
Query: 390 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
IERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 365 IERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 403
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 155/331 (46%), Gaps = 70/331 (21%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P S PA P P + S+ S+++ A S L
Sbjct: 53 SVTPASTTASSEPAPASVTKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPTASTGAPQSSVAAAAATTTATTTTASSG-----------GHP----------LEFLRN 208
Query: 283 SQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHL 342
QFQ +R ++Q NP +L +LQ++G++NP L
Sbjct: 209 QP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQL 240
Query: 343 MRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERL 393
++ I +HQ F++++NEPV+ + + S + VTP+E+EAIERL
Sbjct: 241 LQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERL 300
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 301 KALGFPEGLVIQAYFACEKNENLAANFLLQQ 331
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 157/326 (48%), Gaps = 79/326 (24%)
Query: 126 PESAPPPAAPAPAPAPA---PAPAPAPAPVSSV-------------SDVYGQAASNLVAG 169
P SA + PAP A P PA PV++ S+++ A S LV G
Sbjct: 132 PASATASSEPAPVSATKQENPVEQPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTG 191
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 192 QSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP-------------- 234
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
G+ +Q P P T+GP ++ +++G L+FLRN
Sbjct: 235 ---GDRESQAVVDPP--PVATTGPPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQP--- 286
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
QFQ +R ++Q NP +L +LQ++G++NP L++ I
Sbjct: 287 -------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 321
Query: 348 EHQTDFLRLINEPVEGG-----------EGNVLGQLASAMPQAVTVTPEEREAIERLEAM 396
+HQ F++++NEPV+ + + S + VTP+E+EAIERL+A+
Sbjct: 322 QHQEHFIQMLNEPVQEAGGQGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKAL 381
Query: 397 GFDRALVLEVFFACNKNEELAANYLL 422
GF LV++ +FAC KNE LAAN+LL
Sbjct: 382 GFPEGLVIQAYFACEKNENLAANFLL 407
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 209/434 (48%), Gaps = 57/434 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F++E++P V D+K +E V+G D +PA+ Q LI+ G++L D +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++E +FVVVM+TK K + STV + PA +AP +QP +
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPA-------TAP---SQPAEKPKEEKKEET 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + + P +A A A A ++S A S L+ G+ E V +++
Sbjct: 111 KEEKIDDKPPTESASASTETAAGTTTTASTSLASTLS---AAESTLLTGAAYENVVAELM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RALRAA+NNP+RAV+YL SGIPE + + + PA +
Sbjct: 168 NMG---YERDPVVRALRAAFNNPDRAVDYLLSGIPE-SVLAEAEAPAPAAAEQPEPAAAR 223
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ PA PA T G P P + +G L S++ + F
Sbjct: 224 TESPATPA-TGGSTTTIAATTPATTPATTAASGTSPLG--GQSEEDPLAF---------- 270
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
R QFQ +R ++Q NP +L +LQ+LG+ NP L++LI +HQ F++++N P
Sbjct: 271 -------LREQPQFQQMRQIIQQNPSLLPALLQQLGQSNPQLLQLINQHQEQFIQMLNNP 323
Query: 361 VEGGEGNVLGQLASAMPQA-----------------VTVTPEEREAIERLEAMGFDRA-- 401
V G + + G + VTP+E+EAIER+ A + +
Sbjct: 324 VGGEQQSGGGGGGGGSGGGAPTSGGQVGTGPGGTSYIQVTPQEKEAIERVLAKMYSKCNS 383
Query: 402 -LVLEVFFACNKNE 414
+ E+ C+ +E
Sbjct: 384 DIRYELMKKCHVDE 397
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 201/437 (45%), Gaps = 91/437 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KTL+ F++E+ ++ V +K+ IE +G D YP LI+ GK+L D L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E SFVV+M+ K K + + A + Q +++P STQ ++T+Q
Sbjct: 61 EYNIDEKSFVVIMVAKPKPAPA-AVAPAPVTTTIPQAATASP--STQASSTAQE------ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVY-GQAASNLVAGSNLEATVQQI 179
S PE+ P A A A A P +S Y +A S L G+ E V +I
Sbjct: 112 --DSKPEAKPDEAKSTSTETAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEI 169
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R+ V+RAL+A++NNP+RAVEYL +GIP+ +P GGQ
Sbjct: 170 MNMG---FERDQVVRALQASFNNPDRAVEYLTTGIPD---LPSERVGDQGGQDEGEEETA 223
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+L+FLR Q M + +
Sbjct: 224 AEG-------------------------------VSSLEFLRTQPQFITMRRMVQQNPGV 252
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
S M Q+NP +LQ LI HQ +F+R++NE
Sbjct: 253 LPQLLQS-------------MGQSNPSLLQ---------------LISSHQDEFIRMLNE 284
Query: 360 PV---------EGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVF 407
P EGG+ +V G+ A P V+ +TP E+EAIERL+ +GF LV++ +
Sbjct: 285 PDDGPQPAAGGEGGQQSVPGE--GAPPPGVSYIQITPVEKEAIERLKQLGFPEPLVIQAY 342
Query: 408 FACNKNEELAANYLLDH 424
FAC KNE LAAN+LL+
Sbjct: 343 FACEKNENLAANFLLNQ 359
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 126/436 (28%), Positives = 194/436 (44%), Gaps = 97/436 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ +D V K+ + + + DV SQ ++ GKVL D +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K + + PPT+ +S++
Sbjct: 58 SYKIKEGDSIIYMISKAK---------------KPVVPVAEPPTAATTGDSSES------ 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A P AP P+ A APVS +A S GS EAT+Q I+
Sbjct: 97 -------AASEPVAPTPS-------ATTVAPVSE------EAGSAFAQGSEREATIQNIM 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG +DR+ V +ALRAA+NNP RAVEYL +GIPE Q V P A A+
Sbjct: 137 EMG---YDRDQVEQALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVAAE 193
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
T TS N N LF ++AG G S V +
Sbjct: 194 TTQDDKDHDHDTSDRNVN---LFEAAAAANNASAGEGDA-----SDPVGEL--------- 236
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL---- 354
Q Q LR +Q NP+++ +L+++ + NPH+ +LIQ+ F+
Sbjct: 237 ----------DDAAQLQLLREAIQTNPELIHELLEQISRSNPHIAQLIQQDPEGFINQFF 286
Query: 355 --------RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEV 406
+ +E +E GE + + ++ E++ AI RL +GFDR LV++V
Sbjct: 287 GAGAEEGFEIDDEAMEEGEDAGV---------RIEISEEDQSAINRLCELGFDRNLVIQV 337
Query: 407 FFACNKNEELAANYLL 422
+ AC+KNEE+AA+ L
Sbjct: 338 YMACDKNEEVAADILF 353
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 197/436 (45%), Gaps = 119/436 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLK E+EV V D+ K +E + + A+ Q LIH GK+LK L
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVEELLPN--MQANSQKLIHAGKILKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E ++V+ S T SA PA ++SA T + T ++
Sbjct: 59 DYPDIKEGDKIIVI--------SSKKTESAKPAEPKLDSTSAVATPPKVETATENS---- 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q++P +A P + +P+ S LV GS L+ + +I
Sbjct: 107 ---QNLPRTATPNVSQESHQSPS---------------------SRLVMGSELDQNINRI 142
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+MG +DR +V RA+ AA+NNPERAVE+L +G +P V + G Q N PA+
Sbjct: 143 CEMG---FDRASVERAMAAAFNNPERAVEFLSTG-----NIPSVNLENPGTQ--NTPAE- 191
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
QA+ AG D R Q M
Sbjct: 192 QAE------------------------------NAGGEDVFRMLQSHPM----------- 210
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN- 358
F+ +R VQ++PQ+LQ +L+ +G+ NP L++ I + Q +F+ LIN
Sbjct: 211 --------------FEQIRQAVQSDPQLLQQILENIGQTNPELLQTIIQRQDEFMDLINS 256
Query: 359 ----EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+P E N P V++T E E+IERLE +GF R V+E + AC+KNE
Sbjct: 257 GAEVDPYSNPETN---------PNIVSLTQVEMESIERLEGLGFSRPAVIEAYLACDKNE 307
Query: 415 ELAANYLLDHMHEFED 430
ELAANYLL++ H+F D
Sbjct: 308 ELAANYLLENSHDFTD 323
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 150/309 (48%), Gaps = 79/309 (25%)
Query: 143 PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDR 189
PA PA PV SS S+++ A S LV G + E V +I+ MG ++R
Sbjct: 76 PAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YER 132
Query: 190 ETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQTQAQQP 244
E VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 133 EQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTA 192
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFW 304
+SG G P L+FLRN Q
Sbjct: 193 TTTTTSSG-----------GHP----------LEFLRNQPQ------------------- 212
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 364
FQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 213 ---------FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 263
Query: 365 ---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 264 GGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 323
Query: 416 LAANYLLDH 424
LAAN+LL
Sbjct: 324 LAANFLLQQ 332
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 208/455 (45%), Gaps = 117/455 (25%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K SSS A T S AP+ ++ +S P P ++ A S
Sbjct: 126 GFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPPATPSPAA 184
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+ P SD S L++GS EA + + MG +
Sbjct: 185 ATQP------------------------SDAAFNDPSALLSGSQGEAVISHMESMG---F 217
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--------------------PPVARAS 227
R+ + RA+RAA+ NP RA+EYL +GIPE PP A A
Sbjct: 218 PRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAASA- 276
Query: 228 AGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAGAG--TLD 278
GN PA T ++P AA A T GP+ GS AG G LD
Sbjct: 277 ----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAGEGLPNLD 322
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
FLRN+ FQ LR +VQ PQ+L+P+LQ++
Sbjct: 323 FLRNNPH----------------------------FQQLRQLVQQQPQMLEPILQQVAAG 354
Query: 339 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEA 395
NP + +LI +++ FL+L++E +G A+P + VT EER+AIERL
Sbjct: 355 NPQIAQLIGQNEEQFLQLLSEEGDG-----------ALPPGTHQIHVTEEERDAIERLCR 403
Query: 396 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 404 LGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 438
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 218/446 (48%), Gaps = 92/446 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V SQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +S+ A T S AP T ++ ++ P A
Sbjct: 58 TYNIEEKGFIVCMVSKPKATSAAA------------TPSQAPSTPSRAVASTPAAPPAPA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P APA A P V S L++G+ EA V Q+
Sbjct: 106 PSAATSTPAVPATPSPAAPAQPSADTP----------VAFNDPSALLSGAQSEAVVAQME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQAGNPP 236
MG + R + RA+RAA+ NP+RA+EYL +GIPE + + + G A +PP
Sbjct: 156 SMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASPP 212
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG---------------TLDFLR 281
A + + P+ T G P++LF + G+ GAG L+FLR
Sbjct: 213 APSAPSGESVPSSTGGDE--PVNLF-EAAAQAGTGEGAGRGARAGVEGAGEALPNLEFLR 269
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
N+ FQ LR +VQ PQ+L+P+LQ++ NP
Sbjct: 270 NNPH----------------------------FQQLRQLVQQQPQMLEPILQQVAAGNPQ 301
Query: 342 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGF 398
+ +LI +++ FL+L++E +G A+P A++VT EER+AIERL +GF
Sbjct: 302 IAQLIGQNEEQFLQLLSEEDDG-----------ALPPGTHAISVTEEERDAIERLCRLGF 350
Query: 399 DRALVLEVFFACNKNEELAANYLLDH 424
R LV++ +FAC+KNEELAANYL ++
Sbjct: 351 SRDLVIQAYFACDKNEELAANYLFEN 376
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 203/447 (45%), Gaps = 102/447 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPAPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ+ A A A A P S L+ G E + Q+
Sbjct: 106 NPQTTDAPATTSPAAPAAAGGATFNDP----------------SALLMGPQGEQVIAQME 149
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 150 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 197
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNMGSNAGA--GTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 198 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNL 255
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
DFLRN+ FQ LR +VQ PQ+L+P+LQ++G
Sbjct: 256 DFLRNNP----------------------------HFQQLRQLVQQQPQMLEPILQQVGA 287
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 397
NP L +LI ++Q FL+L++E +E QL Q +TVT EER+AIERL +G
Sbjct: 288 GNPQLAQLIGQNQDQFLQLLSEDIEDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLG 341
Query: 398 FDRALVLEVFFACNKNEELAANYLLDH 424
F R V++ +FAC+KNEELAAN+L +
Sbjct: 342 FPRDSVIQAYFACDKNEELAANFLFEQ 368
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 205/446 (45%), Gaps = 91/446 (20%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K + S ++ VS+ + +++ P + + T T P + P
Sbjct: 505 GFIVCMVSKPKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPAAPV 564
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
AP P S L+ G E V Q+ MG +
Sbjct: 565 VAPVAGGSTTFNDP----------------------SALLMGPQGEQVVAQMESMG---F 599
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QTAVPPVARA 226
R + RA+RAAY NP+RA+EYL +GIPE TA PP A
Sbjct: 600 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAPPTT-A 658
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL--PNMGSNAGAGTLDFLRNSQ 284
+ G + AQ A AP G QGL P G N G LDFLR++
Sbjct: 659 AVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGN--LGNLDFLRSNP 713
Query: 285 QVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMR 344
FQ LR +VQ PQ+L+P+LQ++G NP L +
Sbjct: 714 ----------------------------HFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQ 745
Query: 345 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 404
LI ++Q FL+L++E ++ QL Q +TVT EER+AIERL +GF R V+
Sbjct: 746 LIGQNQDQFLQLLSEDIDDD-----AQLPPGAHQ-ITVTEEERDAIERLCRLGFPRDSVI 799
Query: 405 EVFFACNKNEELAANYLLDHMHEFED 430
+ +FAC+KNEELAAN+L + E +D
Sbjct: 800 QAYFACDKNEELAANFLFEQPDEGDD 825
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 194/441 (43%), Gaps = 110/441 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + +++ + ASQ ++ GKVL+D T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ EN V+ M++K K +++ + A
Sbjct: 58 NFKIKENDQVIFMISKPKKAAAAPEPAAKEQA---------------------------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+PA A AP PA PA S + AS +GS E +Q I+
Sbjct: 90 -------------SPAGAAAPVAEPA-QPAQEGSSATPAAFDASTFASGSVRETAIQNIM 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R V +AL AA+NNP+RAVEYL SGIP++TA PP A Q+G P QT+
Sbjct: 136 AMG---FERPQVEQALTAAFNNPDRAVEYLLSGIPQRTAEPP-----AAAQSGEP--QTE 185
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
QPAA + PN + L + G +A QQ F
Sbjct: 186 -DQPAAEDTNASPNPDNLFEAAAAAGSQGQDA----------DQQQEGDF---------- 224
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+LR ++Q P++ + +LQ+L NP L ++Q + F+R I +
Sbjct: 225 -------------MGSLREILQQQPEMAEAVLQQLAASNPQLAEIVQSNPEAFMRYITD- 270
Query: 361 VEGGEGNVLGQLASAMPQ----------------AVTVTPEEREAIERLEAMGFDRALVL 404
G+ N L Q P+ + +T EE EAI RL +GF+R LV+
Sbjct: 271 ---GDQNALAQALGVPPEYMEGVEGEGELPEGATRIQITQEENEAINRLCELGFERDLVI 327
Query: 405 EVFFACNKNEELAANYLL-DH 424
+V+FAC+KNEE+ AN L DH
Sbjct: 328 QVYFACDKNEEMTANLLFSDH 348
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 207/474 (43%), Gaps = 121/474 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
V E F+VVMLT+ SSS + + +++ +T + + + + S +P T
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTR 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S+ S P + A A + S +A SNL+ G TV +
Sbjct: 119 NSEESILLSETTPISTDNLIGEL-----AQASLQS------RAESNLLMGDEYNQTVLSM 167
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPPAQ 238
++MG + RE V RA+ A+YNNPERAVEYL +GIP E+ + S +
Sbjct: 168 VEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTIDNDVNESTNPNGPQTGSA 224
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
+ ++P S N++P +FLR+ Q
Sbjct: 225 SSVERP------SESNSDP-------------------FEFLRSQPQ------------- 246
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
F +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N
Sbjct: 247 ---------------FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLN 291
Query: 359 EPVEGGE------------------GNVLGQLASAMPQA--------------------- 379
+P+E NV +S + A
Sbjct: 292 QPIERESESSATVPRVSSARTHSTLANVNNLFSSDLEAASAERSTVATSAAQQSGSAAEN 351
Query: 380 -----------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ + ++++AIERL+A+GF ALVL+ +FAC KNEELAAN+LL
Sbjct: 352 EDLEQPLGVSTIRLNRQDQDAIERLKALGFPEALVLQAYFACEKNEELAANFLL 405
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 202/455 (44%), Gaps = 82/455 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V +D + DVKK I P +Q LI G +LKD +
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + EN V+VM K SS T+ T ++ + V
Sbjct: 59 D-ILKENDIVIVMACKKIFSS------------------------TKNNQTKESSSKDVI 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S PP A + AP ++S A S LV G L+ T+ I
Sbjct: 94 KSNEKASSLPPNCDQNNATSNAPEEGTENRSLNS-------AESALVTGEKLKETIDNIC 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS--AGGQAGNP-PA 237
MG ++RETV +A+ A+NNP RA++YL +G PE++ V + + G NP A
Sbjct: 147 AMG---FERETVKKAMMMAFNNPNRAIDYLTNGFPEESQVNEINAINTITGMNEMNPLNA 203
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQ----GLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
+ T+ N N + LPN+ +N + NS Q
Sbjct: 204 MPDVNETNETNETNETNDNSYEREDNENAPSLPNLLNNYNS----LADNSGQ-------- 251
Query: 294 ASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353
S+ D F S F F LR + +NPQ + +L+ +G+ +P + I+E+Q +F
Sbjct: 252 -SVADTPDQFRSSPF-----FNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEF 305
Query: 354 LRLI-------------NEPVEGGEGNVLGQLASAMPQA----VTVTP---EEREAIERL 393
+R I N+ +EG E G L P + +TP E E+I++L
Sbjct: 306 IRAIQNYGNNDHVGSSENDLMEGEEFADPGNLNITDPNNENFQIPITPLNENEMESIKKL 365
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
E++GF + L LE F AC+KNEE+AANYL ++M+++
Sbjct: 366 ESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 400
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 142/289 (49%), Gaps = 70/289 (24%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 8 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 64
Query: 213 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
GIP Q V P PP P +PA +
Sbjct: 65 GIPGDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATT 104
Query: 269 GSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQIL 328
+ +G L+FLRN QFQ +R ++Q NP +L
Sbjct: 105 TTTSGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLL 136
Query: 329 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------------EGNVLGQLA 373
+LQ++G++NP L++ I +HQ F++++NEPV+ G + +
Sbjct: 137 PALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAG 196
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 197 SGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 245
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 203/462 (43%), Gaps = 93/462 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD----V 56
MKV V+TL+ EI V ED + DVKK IE P +Q LI G +LKD V
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 57 TTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L+EN + V+VM K SS T + ++SSA ++ T
Sbjct: 59 DVLKENDI-----VIVMACKKIFSSKNNQT-------KESSSSSANVLKSKEKT------ 100
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P PA AP A S A S LV G L+ T+
Sbjct: 101 ------------------PLPANDDQKNAAPTAAEEGGQSKNLNNAESALVTGEKLKETI 142
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAG 233
I MG ++RE V +A+ A+NNP RA++YL +G P++ V ++ + + G
Sbjct: 143 DNICAMG---FEREAVRKAMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEMG 199
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQ-------GLPNMGSNAGAGTLDFLRNSQQV 286
A + T+ N + + + LPN+ +N A N +Q
Sbjct: 200 AANAANAMRDVNETNETNETNETNDNSYEREDNESAPNLPNLLNNYSA----LADNPRQ- 254
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
S+ D F S F F LR + +NPQ + +L+ +G+ +P + I
Sbjct: 255 --------SVPDSTDQFRSSPF-----FNILRDVALSNPQRIPEILEMIGRTDPSFLEFI 301
Query: 347 QEHQTDFLRLI-----NEPVEGGEGNVLG--QLASAMPQAVT----------VTP---EE 386
+E+Q +F+R I N+ E +++ A Q +T +TP E
Sbjct: 302 RENQGEFIRAIQNYGTNDHTANTENDLMAGDAFADQGNQNITDPNNENFNIPITPLNENE 361
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
E+I++LE++GF + L LE F AC+KNEE+AANYL ++M+++
Sbjct: 362 MESIKKLESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 403
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 213/444 (47%), Gaps = 90/444 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ A + + ++ L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPSTPSPAAAGAAQAQGSAFNDPSA-LLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A ++
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQTAAPES- 209
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQVSMM 289
AP++G + P++LF G GA +L+FLRN+
Sbjct: 210 -------APSAGDD-EPVNLFEAAAQAGGQEGGARGARAAGGAELPSLEFLRNNPH---- 257
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
FQ LR +VQ PQ+L+P+LQ++ NP + +LI ++
Sbjct: 258 ------------------------FQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQN 293
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEV 406
+ FL+L++E + E A+P T VT EER+AIERL +GF R LV++
Sbjct: 294 EEQFLQLLSEEPDDDE---------ALPPGTTQIHVTEEERDAIERLCRLGFSRDLVIQA 344
Query: 407 FFACNKNEELAANYLLDHMHEFED 430
+FAC+KNEELAANYL ++ + ED
Sbjct: 345 YFACDKNEELAANYLFENPDDPED 368
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 203/447 (45%), Gaps = 98/447 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATSTPAAPAPAPAAAGGATFNDP------------SALLMGPQGEQVIAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 154 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 201
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 202 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNL 259
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
DFLRN+ FQ LR +VQ PQ+L+P+LQ++G
Sbjct: 260 DFLRNNPH----------------------------FQQLRQLVQQQPQMLEPILQQVGA 291
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 397
NP L +LI ++Q FL+L++E +E QL Q +TVT EER+AIERL +G
Sbjct: 292 GNPQLAQLIGQNQDQFLQLLSEDIEDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLG 345
Query: 398 FDRALVLEVFFACNKNEELAANYLLDH 424
F R V++ +FAC+KNEELAAN+L +
Sbjct: 346 FPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 202/448 (45%), Gaps = 100/448 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F+V M+TK P T+T T+SQ P+ PT
Sbjct: 58 SYNIEEKGFIVCMVTK-------------------------PKTTTPAATSSQAPSTPTP 92
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + AP PA ++ S L+ G E + Q+
Sbjct: 93 AVASTPAAPAPASNPQPTDAPATTTPAAPAPAPAAAGGATFNDPSALLMGPQGEQVIAQM 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 153 ESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATT 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGT 276
PAAPA T G ++LF QGL G G
Sbjct: 201 APSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGN 258
Query: 277 LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELG 336
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G
Sbjct: 259 LDFLRNNPH----------------------------FQQLRQLVQQQPQMLEPILQQVG 290
Query: 337 KQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM 396
NP L +LI ++Q FL+L++E +E QL Q +TVT EER+AIERL +
Sbjct: 291 AGNPQLAQLIGQNQDQFLQLLSEDIEDD-----AQLPPGTHQ-ITVTEEERDAIERLCRL 344
Query: 397 GFDRALVLEVFFACNKNEELAANYLLDH 424
GF R V++ +FAC+KNEELAAN+L +
Sbjct: 345 GFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 191/433 (44%), Gaps = 98/433 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IEV DKV +K+ I +GS+ +P Q LI+ GK+L D L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 ENKVA-ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + +FVVVM K KV + S ++ Q S+ + QP++T
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVESTVSMETVQPSST-------- 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + A A + S G ++ + GS L++++ ++
Sbjct: 112 ------------PLLTSTASASETTSVSTTSTAVSSQPDIG---TSFLTGSALDSSINEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ +G + RE V+RAL+ ++ N +RA EYL SG VP + + P
Sbjct: 157 MSLG---FSREQVLRALQRSFQNADRAAEYLLSG-----NVPELVE--------DAPGDI 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQVSMMFYLFASLLF 298
+ A PA + GA G L+FLR+ Q MM
Sbjct: 201 DEESEALPA----------------------DVGAEGDLNFLRDFPQFRMM--------- 229
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
R+ VQ +P L +LQE+G+ NP L++LI ++Q F+ L+N
Sbjct: 230 -------------------RSQVQRHPDTLPQLLQEIGRSNPQLLQLISQNQEAFIALLN 270
Query: 359 EPVEG------GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
EP G E G + + VT EE+ AI+R+ MGF+ A V++ FFAC K
Sbjct: 271 EPETGESSAPVSEDAFGGDAGAGGGFQIHVTTEEKAAIDRIVGMGFNEAEVIQAFFACEK 330
Query: 413 NEELAANYLLDHM 425
NE+LA +LL +
Sbjct: 331 NEQLAIEFLLSSI 343
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 186/426 (43%), Gaps = 141/426 (33%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
G+P P Q+ AP + AG
Sbjct: 204 -----------------GSPEPEHGSVQESQAPE------------------QPATEAGE 228
Query: 275 GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQE 334
L+FLR+ QFQ +R ++Q NP +L +LQ+
Sbjct: 229 NPLEFLRDQP----------------------------QFQNMRQVIQQNPALLPALLQQ 260
Query: 335 LGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEE 386
LG++NP L++ I HQ F++++NEP + EG V G L PQ + VTP+E
Sbjct: 261 LGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GALGEEAPQMNYIQVTPQE 319
Query: 387 REAIER 392
+EAIER
Sbjct: 320 KEAIER 325
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 136/489 (27%), Positives = 210/489 (42%), Gaps = 134/489 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSK------------------ 100
Query: 121 PPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSS--------VSDVYGQAASNLVAGSN 171
QS+P E A +P+ + P+SS + + +A SNL+ G
Sbjct: 101 --QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDE 158
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP + + +
Sbjct: 159 YNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNE 211
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFY 291
+ NP + P+ P P S +A + + + +FLR+ Q
Sbjct: 212 STNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEFLRSQPQ------ 249
Query: 292 LFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351
F +R+++ NP +L +LQ++G+ NP L++LI E+Q
Sbjct: 250 ----------------------FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQD 287
Query: 352 DFLRL----INEPVEGG-------------------------EGNVLGQLASAMPQA--- 379
FL + I+ E G E Q ++A A
Sbjct: 288 AFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQ 347
Query: 380 ------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 421
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+L
Sbjct: 348 SGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFL 407
Query: 422 LDHMHEFED 430
L FED
Sbjct: 408 LS--SSFED 414
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 142/283 (50%), Gaps = 67/283 (23%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-PLDLFPQGLPNMGS 270
Q V P PPA T T P ++ +
Sbjct: 200 GDRESQAVVDP------------PPAAT----------TGAPQSSVAAAAATTTATTTTT 237
Query: 271 NAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQP 330
++G L+FLRN QFQ +R ++Q NP +L
Sbjct: 238 SSGGHPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPA 269
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEPV---------EGGEGNVLGQLASAMPQAVT 381
+LQ++G++NP L++ I +HQ F++++NEPV GG + + S +
Sbjct: 270 LLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQ 329
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 330 VTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 372
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 146/462 (31%), Positives = 210/462 (45%), Gaps = 116/462 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSRAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--------QT-AVPPVARASA 228
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE QT A P + A
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAPNSPTPA 203
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA---------------- 272
GG AG A QA P+SG + P++LF
Sbjct: 204 GGNAG---ATAQAN------PSSGGD-EPMNLFEAAAAAQNRGGAGGARSGGTGGAGGGA 253
Query: 273 -GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
A +LDFLRN+ Q + R +VQ PQ+L+P+
Sbjct: 254 LNANSLDFLRNNPQFQQL----------------------------RQVVQQQPQMLEPI 285
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEERE 388
LQ++G NP L ++I + FL+L+ E + + +P QA++VT EERE
Sbjct: 286 LQQVGAGNPQLAQMIASNPEQFLQLLAEDADED---------APLPPGAQAISVTEEERE 336
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
AIERL +GF+R LV++ +FAC+KNEELAAN+L D + +D
Sbjct: 337 AIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 378
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 209/506 (41%), Gaps = 154/506 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I+ PE V ++K I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVML++ SG S+ + A + Q P + +TT P +
Sbjct: 60 SYKVDEKKFIVVMLSRD---ISGTSSNTNADGQRKQ-----PNEQMEGSTTGIDKKPVLQ 111
Query: 121 PPQSVP--------------------ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160
+ E + + + AP P PA S D+ G
Sbjct: 112 NANASSAEKGIINNNNRSNDVLGVEIERSGSSSQTQISTAP---EVPIPATDYSSIDLVG 168
Query: 161 Q---------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
+ A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL
Sbjct: 169 ELANASLQSRAESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLI 225
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
+GIP Q + P PN GLP +
Sbjct: 226 NGIP------------------------QDENLFNPGDEEEPNRVETSHRQGGLP---AE 258
Query: 272 AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPM 331
+ A +FLR+ QF +R+++ NP +L +
Sbjct: 259 SAADPFEFLRSQP----------------------------QFLQMRSLIYQNPHLLHAV 290
Query: 332 LQELGKQNPHLMRLIQEHQTDFLRLINEPVE----------------------------- 362
LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 291 LQQIGQTNPALLQLISENQDAFLNMLNQPLDEEAADNAQRAGRTQSSSPRRTESTPTTNP 350
Query: 363 ------GGEGNVLGQLASAMPQA--------------------VTVTPEEREAIERLEAM 396
GG +V G ++ A + +TP++++AIERL+A+
Sbjct: 351 SEESNAGGHRSVAGSDNPSIAIAPEGDDSVATGRNIQAENLATIRLTPQDQDAIERLKAL 410
Query: 397 GFDRALVLEVFFACNKNEELAANYLL 422
GF ALVL+ +FAC K+EELAAN+LL
Sbjct: 411 GFPEALVLQAYFACEKDEELAANFLL 436
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 207/481 (43%), Gaps = 132/481 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSK------------------ 100
Query: 121 PPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSS--------VSDVYGQAASNLVAGSN 171
QS+P E A +P+ + P+SS + + +A SNL+ G
Sbjct: 101 --QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDE 158
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP + + +
Sbjct: 159 YNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNE 211
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFY 291
+ NP + P+ P P S +A + + + +FLR+ Q
Sbjct: 212 STNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEFLRSQPQ------ 249
Query: 292 LFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351
F +R+++ NP +L +LQ++G+ NP L++LI E+Q
Sbjct: 250 ----------------------FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQD 287
Query: 352 DFLRL----INEPVEGG-------------------------EGNVLGQLASAMPQA--- 379
FL + I+ E G E Q ++A A
Sbjct: 288 AFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQ 347
Query: 380 ------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 421
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+L
Sbjct: 348 SGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFL 407
Query: 422 L 422
L
Sbjct: 408 L 408
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 189/428 (44%), Gaps = 125/428 (29%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLL------------------- 270
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 271 -----------------------------QLKALGFPESLVIQAYFACEKNENLAANFLL 301
Query: 423 DHMHEFED 430
FED
Sbjct: 302 S--QNFED 307
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 157/281 (55%), Gaps = 34/281 (12%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS + +AAS LV GS+ EA V I++MG + RE V+RALRA++NNP RAVEYL +
Sbjct: 121 SSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRASFNNPNRAVEYLMT 177
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN--MGS 270
GIP+ A P + A+ A + A+ + PA P L MG
Sbjct: 178 GIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEGAGEGGISLPSNLLGALMGQ 237
Query: 271 NAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQP 330
GAG + + R QF ++ MVQ NPQ+L P
Sbjct: 238 QGGAGG---------------------------HFEWLRQHPQFNQIKAMVQRNPQLLGP 270
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--VTVTPEERE 388
+LQ+LG+ NP ++++I +HQ +F+ L+NEP++GG G G A P + + VT EE+E
Sbjct: 271 LLQQLGQLNPQILQMIGQHQAEFMALLNEPIQGGAGGAPGGPGGAPPGSNYIQVTQEEKE 330
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
AI+RL+A+GF+R +V+E FFAC+K+E++ ANYL DH HE E
Sbjct: 331 AIDRLQALGFERHVVIEAFFACDKDEQVTANYLFDHGHELE 371
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 141/465 (30%), Positives = 207/465 (44%), Gaps = 122/465 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSKAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A+ A+
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPE-SALQEQAQ------------ 190
Query: 238 QTQAQQPAAPAPTSGPNA------------NPLDLFPQGLPNMGSNA------------- 272
QTQA+ P +P P G P++LF
Sbjct: 191 QTQARAPNSPTPAGGNTGATAQANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAG 250
Query: 273 ----GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQIL 328
A +LDFLRN+ Q + R +VQ PQ+L
Sbjct: 251 AGALNANSLDFLRNNPQFQQL----------------------------RQVVQQQPQML 282
Query: 329 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPE 385
+P+LQ++G NP L ++I + FL+L+ E + + +P QA++VT E
Sbjct: 283 EPILQQVGAGNPQLAQMIASNPEQFLQLLAEDADED---------APLPPGAQAISVTEE 333
Query: 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EREAIERL +GF+R LV++ +FAC+KNEELAAN+L D + +D
Sbjct: 334 EREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 378
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 189/428 (44%), Gaps = 125/428 (29%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLL------------------- 270
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 271 -----------------------------QLKALGFPESLVIQAYFACEKNENLAANFLL 301
Query: 423 DHMHEFED 430
F+D
Sbjct: 302 S--QNFDD 307
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 189/428 (44%), Gaps = 125/428 (29%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLL------------------- 270
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 271 -----------------------------QLKALGFPESLVIQAYFACEKNENLAANFLL 301
Query: 423 DHMHEFED 430
F+D
Sbjct: 302 S--QNFDD 307
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 205/445 (46%), Gaps = 102/445 (22%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTS----------------SAPPTSTQPTTTSQTPA 116
++ + + +++ A + A A Q+ + +AP TST+ TPA
Sbjct: 73 LVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPATSTR-----ATPA 127
Query: 117 P-TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P + SVP ++ A P P P+P P A A SS + QAA L+ E
Sbjct: 128 PASSTCAMSVPATS-TRATPRLPPCPSPTPDDAIAGPSSRAQPSEQAARALLTRPASEQM 186
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARASAGG 230
V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S G
Sbjct: 187 VAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSSGAG 243
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
++ + +A + AA TSG +PLD+ LRN
Sbjct: 244 RS----SAVEADEGAA---TSGSGGHPLDV-------------------LRN-------- 269
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
L +F+ LR ++Q P +L +LQ L Q+P L ++++Q
Sbjct: 270 --------------------LPEFEELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQ 309
Query: 351 TDFLRLIN--------------EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM 396
+ ++ E V+ E + + VTP+E+ AIERL+A+
Sbjct: 310 EYLVHMLTTEEEEDGSEGGGGGEGVDNAE---TAETVREDDSYIEVTPQEQAAIERLKAL 366
Query: 397 GFDRALVLEVFFACNKNEELAANYL 421
GF LV++ +FAC KNE LAA+ L
Sbjct: 367 GFPEGLVIQAYFACEKNEILAASLL 391
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 189/428 (44%), Gaps = 125/428 (29%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAGED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLL------------------- 270
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 271 -----------------------------QLKALGFPESLVIQAYFACEKNENLAANFLL 301
Query: 423 DHMHEFED 430
F+D
Sbjct: 302 S--QNFDD 307
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 132/274 (48%), Gaps = 74/274 (27%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E V +I+ MG + R+ V+ ALRA++NNP RAVEYL +GIP Q
Sbjct: 159 EQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIPANVLET---------QT 206
Query: 233 GNPPAQTQAQQPAAP---------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
P TQ++ A P NPL PQG G L FLR S
Sbjct: 207 AETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------GPLGFLR-S 255
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
Q V F +R +VQ+NP+ L PMLQ+LG+ NP L+
Sbjct: 256 QAV---------------------------FSQMRQIVQSNPEALAPMLQQLGQNNPQLL 288
Query: 344 RLIQEHQTDFLRLINEPVEGGEGNV---------------LGQLASAMPQAVTVTPEERE 388
LI+ HQ++F+ L+NEP+ G+ + ++VT EE+E
Sbjct: 289 ELIRNHQSEFMELMNEPITEGQPRIAPYQQQQQQQQPSRQSPGGPGLGSLGISVTQEEKE 348
Query: 389 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
AI+RL+A+GFD LV++ +FAC+KNE LAAN+LL
Sbjct: 349 AIDRLKALGFDEGLVVQAYFACDKNENLAANFLL 382
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 200/444 (45%), Gaps = 80/444 (18%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA--------------- 107
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 185
SA P APA A P P S+ V + V G+ T+++I++MG
Sbjct: 108 --SADAPTAPA-----AEELQPQEEPNSNTEQVESVSTPGFVVGTQRNETIERIMEMG-- 158
Query: 186 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQP 244
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+QP
Sbjct: 159 -YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEQQQQAVAPTEQPPTTATTAEQP 216
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFW 304
A DLF Q G N +G L + + + L + D+
Sbjct: 217 AED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGLTVEDLL- 262
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEH 349
+LR +V NP+ L P+L+ + + P L+ + ++
Sbjct: 263 -----------SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDN 311
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRA 401
D + ++ VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R
Sbjct: 312 MQDVMEGADDMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERD 371
Query: 402 LVLEVFFACNKNEELAANYLL-DH 424
LV++V+FAC+KNEE AAN L DH
Sbjct: 372 LVIQVYFACDKNEEAAANILFSDH 395
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 208/442 (47%), Gaps = 41/442 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K ++++P + + DVK + + + SQ +I+ GKVL+D T+E
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP--TTTSQTPAPT 118
E ++ E ++ M++K K STV+ A + A P TT S + P
Sbjct: 59 ECQLKEGDQIIFMISKKK------STVTKVTEPPAAAAAQAQAPGANPEITTASNSATPG 112
Query: 119 V---APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV-YGQAASNLVAGSNLEA 174
+ A PE P A A A A AP ++ + +++ V G+
Sbjct: 113 LIETAAASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNE 172
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
TV++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE + QA
Sbjct: 173 TVERIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPTQA-- 227
Query: 235 PPAQTQAQQPAAPAPTSGPNANPL------DLFPQ---GLPNMGSNA---GAGTLDFLRN 282
Q A + +A A +G +A+ DLF Q G N GS G T +
Sbjct: 228 -SPQNIANEGSATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAGSAVGGSTGEGTPG 286
Query: 283 SQQVSMMFYLFASLLFICD--VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNP 340
S +++ L D L ++ LR + +NPQ ML E N
Sbjct: 287 SIGLTIQDLLSLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQTFISMLLEAVGDNL 346
Query: 341 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 400
+ + + D INE G+ + +G+ ASA P + +TPE+ +AI RL +GF+R
Sbjct: 347 QSLEGLGDIGGDLGE-INE----GDNDTMGE-ASAAPPTIQLTPEDEQAISRLCELGFER 400
Query: 401 ALVLEVFFACNKNEELAANYLL 422
+LV++V+FAC+KNEE+AAN L
Sbjct: 401 SLVIQVYFACDKNEEIAANMLF 422
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 188/428 (43%), Gaps = 125/428 (29%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLL------------------- 270
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 271 -----------------------------QLKALGFPESLVIQAYFACEKNENLAANFLL 301
Query: 423 DHMHEFED 430
F+D
Sbjct: 302 S--QNFDD 307
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 213/457 (46%), Gaps = 99/457 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA----PANQAQTTSSAPPTSTQPTTTSQTPA 116
+ E F+V M++K K + S ++ S+ PA A +T +AP + PTT+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTPAPVAASTPTAPAPRSNPTTSDAPAT 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P+ A P + P P S L+ G E +
Sbjct: 118 PSPAAPAAAPAVGGAATFNDP--------------------------SALLMGPQGEQVI 151
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
Q+ MG + R + RA+RAA+ NP+RA+EYL +G +P ++A A PP
Sbjct: 152 AQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNG------IPETSQAEQREAAPAPP 202
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQ----GLPNMGS-------------------NAG 273
A T AAPA + ++LF G P G+
Sbjct: 203 ATTAPTGGAAPAAAATEGDEHVNLFEAAAQAGTPQAGATGRGARAAGQGLAAAAEGQGGS 262
Query: 274 AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQ 333
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ
Sbjct: 263 LGNLDFLRNNPH----------------------------FQQLRQLVQQQPQMLEPILQ 294
Query: 334 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
++G NP L +LI ++Q FL+L++E ++ QL Q +TVT EER+AIERL
Sbjct: 295 QVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-----AQLPPGTHQ-ITVTEEERDAIERL 348
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 349 CRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 385
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 199/444 (44%), Gaps = 80/444 (18%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA--------------- 107
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 185
SA P APA A P P S+ + V G+ T+++I++MG
Sbjct: 108 --SADAPTAPA-----AEELQPQEEPSSNTEQAESVSTPGFVVGTQRNETIERIMEMG-- 158
Query: 186 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQP 244
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+QP
Sbjct: 159 -YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEPQQQAVAPTEQPPTTATTAEQP 216
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFW 304
A DLF Q G N +G L + + + L + D+
Sbjct: 217 AED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGLTVEDLL- 262
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEH 349
+LR +V NP+ L P+L+ + + P L+ + ++
Sbjct: 263 -----------SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDN 311
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRA 401
D + ++ VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R
Sbjct: 312 MQDVMEGADDMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERD 371
Query: 402 LVLEVFFACNKNEELAANYLL-DH 424
LV++V+FAC+KNEE AAN L DH
Sbjct: 372 LVIQVYFACDKNEEAAANILFSDH 395
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 202/443 (45%), Gaps = 78/443 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K + ++++ + VK+ + D SQ LI GKVLKD ++E
Sbjct: 2 VSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT--SSAPPTSTQPTTTSQTPAPT 118
+ + V+ M++ K +++ T S+AP Q++ T S P TSTQP T
Sbjct: 59 SCNFKDGNEVIFMVSAKKATATKV-TESSAPKAQSEETPSESTPATSTQPETNQNETTE- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
PA + AP + D + V GS AT+++
Sbjct: 117 --------------------PATNSSSENTEAPNAGTDDGF-------VVGSERNATIER 149
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I++MG ++R V RALRAA+NNP+RAVEYL GIPE T P Q G +
Sbjct: 150 IMEMG---YERAEVERALRAAFNNPDRAVEYLLMGIPE-TLRP---------QEGQTSQE 196
Query: 239 TQAQQPAAPAPTSGPNANP---LDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
+A ++ NA P DLF Q + + + A T + S S
Sbjct: 197 HEADVDMNEEESTEGNAEPPAEDDLFAQAARDSATPSAAQTAGGTTSESAGSATGGPPGS 256
Query: 296 L-LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
+ L + D+ ALR +V NP+ L P+L+ L + P L I + F+
Sbjct: 257 IGLTMEDLL------------ALRQVVSGNPEALAPLLENLSNRYPQLREQIMANPEVFV 304
Query: 355 RLINEPV----EG---------GEGN-VLGQLASAMPQA-VTVTPEEREAIERLEAMGFD 399
++ E V +G GEG+ V G A A +T++PE+ +AI RL +GF+
Sbjct: 305 SMLLEAVGDNLQGAMDFEAIAEGEGDTVEGADGFAEENAPITLSPEDEQAISRLCELGFE 364
Query: 400 RALVLEVFFACNKNEELAANYLL 422
R LV++V+FAC+KNEE+AAN L
Sbjct: 365 RTLVIQVYFACDKNEEIAANMLF 387
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 197/460 (42%), Gaps = 116/460 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K IE+ + +S K+ I + D ASQ LI+ GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E V+ M++K+K + T S ++ P +Q T +++T
Sbjct: 58 GCNLKEGDQVIFMISKTKKKADVKVTES----------TTEPQDESQATASAET------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A A APA A + + G ++ V GS TV +I+
Sbjct: 102 ------------SAVANAPAEATTTGTRTGTTAVTQE-EGTTDASFVTGSQRNETVNRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V RALRAA+NNP+RAVEYL GIPE + P+Q Q
Sbjct: 149 EMG---YDREQVERALRAAFNNPDRAVEYLLMGIPE----------------ASEPSQQQ 189
Query: 241 AQQPAAPAPTSGPNANPL--------------DLFPQGLPNMG-----SNAGAGTLDFLR 281
A+ A +G NAN +LF Q N G S AG G
Sbjct: 190 AE---AVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAGLG------ 240
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
+++ + + LR +V P+ L P+ + L + PH
Sbjct: 241 -GEEMGTIGLTMEDIT------------------QLRDVVSGRPEALMPLFESLSTRYPH 281
Query: 342 LMRLIQEHQTDFLRLINEPV-----------------EGGEGNVLGQLASAMPQAVTVTP 384
L + + F+ L+ E V EG G+ GQ A P VT++
Sbjct: 282 LRETMLQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPN-VTISA 340
Query: 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
E+ EAI RL +GF+R LV++++FAC+KNEE+AAN L ++
Sbjct: 341 EDEEAINRLCELGFERTLVVQIYFACDKNEEIAANMLFNN 380
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 183/434 (42%), Gaps = 130/434 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLK E++V+ V V + IE + + PA Q LIH GK+LK ++
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKREMQIK 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ +K
Sbjct: 59 DYPDIKDGDKVIVIASKV------------------------------------------ 76
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
V SAP P A P P AP S VY +S L+ G L+ V +I
Sbjct: 77 -----VESSAPQPVAKVEEKTPESTPVQQEAPEKS-EPVYDNPSSKLLIGQELQDNVNRI 130
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+MG ++R V RA+ AA+NNPERAVE+L +G IPE
Sbjct: 131 CEMG---FERAMVERAMAAAFNNPERAVEFLSTGHIPE---------------------- 165
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLF 298
P A +D LP+M + D R ++ V M
Sbjct: 166 --------------PEAMGMD-----LPSMEHSG-----DMPRTNEDVIQMLQ------- 194
Query: 299 ICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 358
+ F L Q +VQ++PQ+LQ +L +G+ NP L++ I EHQ +F+ LI+
Sbjct: 195 -----SHPMFEQLRQ------VVQSDPQMLQQLLDNIGRNNPELLQSIIEHQDEFMDLIS 243
Query: 359 EPVEGGEGNVLGQ--------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
G E G P +++T E E+++RLEA+GF R V+E F AC
Sbjct: 244 ---SGAEVEPFGMPLERPDSVNDENNPNIISLTESEMESVQRLEALGFPRPAVIEAFLAC 300
Query: 411 NKNEELAANYLLDH 424
+KNE+LAANYLL+H
Sbjct: 301 DKNEQLAANYLLEH 314
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 190/427 (44%), Gaps = 90/427 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK ++V P D + K+ + TV+ SD AS+ ++ GKVL+D +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV EN V++ + S P N S++ TT + AP +A
Sbjct: 58 AFKVKEND-VIIFMLPSVFKKE-------EPKNLENRIDKTSTESSKTTTIA---APGIA 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P PV++ AS G++ E ++ I+
Sbjct: 107 VP--------------------------PVPVNTSGSFN---ASTFAVGNDRENAIRNIM 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DR V ALRAA+NNP+RAVEYL +G+P P SA + P +
Sbjct: 138 EMG---YDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPIAGSRSAPNDGRSQPVSST 194
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ TS A DLF + A +G N+Q+ +M
Sbjct: 195 GVES-----TSTETAPGTDLFE-----AAAVASSGQQQ-RENTQRDDLM----------- 232
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+ ++Q NP++++P LQ++ NP L LIQ++ +F+R +
Sbjct: 233 ---------------QIGELIQNNPEMVEPFLQQIASSNPQLAELIQQNPEEFMRAL--- 274
Query: 361 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
+EG G G+L Q + V PEE AI RL +GFDR LV++V+FAC+KNEE+ A+
Sbjct: 275 MEGDNGE--GELEDEGVQ-IQVAPEEEAAINRLCELGFDRNLVVQVYFACDKNEEMTADL 331
Query: 421 LL-DHMH 426
L +H+
Sbjct: 332 LFSEHID 338
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 214/477 (44%), Gaps = 124/477 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P +K+ VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M +K K AAP+ A+ ++ A P ST + A + +
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAPSKPAEPSTPAKPVSTPAAPAAPQAAQSTS 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +P PA+ A P S L G A + +
Sbjct: 108 ASQPPATPSPAPASTAATSESGNFNDP----------------SALALGEQRTAAIAGME 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQAGNPPA 237
MG + R+ + RA+RAA+ NP+RAVEYL +GIP +Q P A P
Sbjct: 152 AMG---FARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEERPAAASPR--------PT 200
Query: 238 QTQAQQPAAPA----PTSGPNAN-PLDLFPQGLPNMGSNAGAG----------------- 275
Q QQP APA T+ P+ + P++LF Q AGA
Sbjct: 201 SNQGQQPVAPATIATETAAPSGDEPVNLFEQAAQAGRGGAGARGAAGTGAGAGAGAGSLA 260
Query: 276 -------------------TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQA 316
L+FLR++ Q +
Sbjct: 261 AALGGGQGGGQGGGQAGAANLEFLRSNPQFQQL--------------------------- 293
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 376
R +VQ PQ+L+P+LQ++ NP L ++I ++ F++L+ E G+ +V A+
Sbjct: 294 -RQVVQQQPQMLEPILQQVAAGNPQLAQIITQNPEQFMQLL---AEDGDDDV------AL 343
Query: 377 P---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
P Q ++VT EEREAIERL +GF+R +V++ +FAC+KNEELAAN+L D E E+
Sbjct: 344 PPGAQQISVTEEEREAIERLCRLGFERDMVIQAYFACDKNEELAANFLFDQPDEPEE 400
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 202/445 (45%), Gaps = 71/445 (15%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + +T + PP + + TT P +
Sbjct: 64 DGDQVVFMVSQKKST---------------KTKVTEPPIAPESATT---------PGREN 99
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS--NLVAGSNLEATVQQILDMG 183
A P + APA P + + ++AS V G+ T+++I++MG
Sbjct: 100 STEASPSTDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG 159
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE P + +A A T A+Q
Sbjct: 160 ---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQ 216
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVF 303
P+ A T+ A DLF Q G NA +G L + + + L + D+
Sbjct: 217 PSTAATTAEQPAED-DLFAQAA--QGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLL 273
Query: 304 WYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQE 348
+LR +V NP+ L P+L+ + + P L+ + +
Sbjct: 274 ------------SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGD 321
Query: 349 HQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDR 400
+ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R
Sbjct: 322 NMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFER 381
Query: 401 ALVLEVFFACNKNEELAANYLL-DH 424
LV++V+FAC+KNEE AAN L DH
Sbjct: 382 DLVIQVYFACDKNEEAAANILFSDH 406
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 200/466 (42%), Gaps = 107/466 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K F I++ P V +K+ IE QG D +P + Q L++ G+VL D L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++ E+ V V++ + + +++ A + A A Q+ + ++ P A
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATATAGQSHPATAASAGAGAPARGPALP-AA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP----------------------------APAPV 152
P S A PAPA A A A A
Sbjct: 120 PATST------RATPAPASVSASGTASAQPAPAGAPQAAGQQAGPPGSPSPTPDDAIAGP 173
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS + QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 174 SSRAQPSEQAARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLM 230
Query: 213 GIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 267
G+P A PP A +S G ++ A + A TSG +P
Sbjct: 231 GLPGDRASAAEVEPPQAGSSGAG-------RSSAVEADAGTATSGSGGHP---------- 273
Query: 268 MGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQI 327
LDFL N +FQ LR ++Q +P +
Sbjct: 274 ---------LDFLLNHP----------------------------EFQQLRQIIQHDPSL 296
Query: 328 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--------NVLG--QLASAMP 377
L +LQ + +NP L+ ++Q R++ PVE G + +G + A A
Sbjct: 297 LPEVLQGIRPRNPQLLAQFSQYQGYLSRMLTAPVEEAGGERRGGEGVDSVGTAEAARADG 356
Query: 378 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
+ +TP E AIERL+A+GF LV+E +FAC KNEE AAN+LL+
Sbjct: 357 SYIKITPRELAAIERLKALGFPEGLVVEAYFACEKNEEWAANFLLE 402
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 200/446 (44%), Gaps = 80/446 (17%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ + + + + AP A TT+ ST+P +TS T APT A +
Sbjct: 64 DGDQVVFMISQKRSTKTKVTEPPIAPETAA-TTNPVRDDSTEPASTS-TDAPT-AETSTA 120
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS-NLVAGSNLEATVQQILDMGG 184
E + P PA G A++ V G+ T+++I++MG
Sbjct: 121 AEGSQPQEEQTSTTEPA-----------------GSASTPGFVVGTQRNETIERIMEMG- 162
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA--Q 242
+ RE V RALRAA+NNP+RAVEYL GIPE P +P Q A +
Sbjct: 163 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLRQP------------DPQQQAVAANE 208
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A T+ A DLF Q G N +G L + ++ + + L + D+
Sbjct: 209 QPATAATTTEQPAED-DLFAQAA--QGGNTSSGALGSVGSAADAAQGGPPGSIGLTVEDL 265
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
+LR +V NP+ L P+L+ + + P L I + F+ ++ E V
Sbjct: 266 L------------SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVG 313
Query: 363 GGEGNVL-----------------------GQLASAMPQAVTVTPEEREAIERLEAMGFD 399
+V+ GQ V TPE+ +AI RL +GF+
Sbjct: 314 DNMQDVMEGADEMVEGEEVEVAGESSTAGPGQSEGESSFQVDYTPEDDQAISRLCELGFE 373
Query: 400 RALVLEVFFACNKNEELAANYLL-DH 424
R LV++V+FAC+KNEE AAN L DH
Sbjct: 374 RDLVIQVYFACDKNEEAAANILFSDH 399
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 169/390 (43%), Gaps = 141/390 (36%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG FEI+V ED V+DVKKNIETV G A++QMLIH+GKVL+D TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N+V+E S + VM K + + S+ S P QA A P+ST T
Sbjct: 58 ANEVSEKSIIAVMKRKHASTVTSTSSASLKPQVQA-----AHPSSTASNMTY-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+S+ ES +QQIL
Sbjct: 105 --ESISESG----------------------------------------------IQQIL 116
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL A N+ ++AVEYLY G+PEQ+ P +T+
Sbjct: 117 EMVSGTWSREAVAYALYFASNDLDKAVEYLYFGLPEQS---------------EDPHKTE 161
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
Q P + +A +LD LRN+
Sbjct: 162 GTQEHTQEPEASQDA----------------IQEWSLDALRNTP---------------- 189
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI--- 357
+F+ +R +VQ++P L+ +L+ + + NP L++ I +++ DFLRL+
Sbjct: 190 ------------EFEYVRPLVQSDPSFLEEILEVIEEHNPQLVQFILDNKADFLRLVLDQ 237
Query: 358 --------------NEPVEGGE-GNVLGQL 372
NEP GGE GN +G+
Sbjct: 238 PQEHQDDDVLHFQSNEPNNGGESGNQVGKF 267
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 189/428 (44%), Gaps = 122/428 (28%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QP+ A AG L+FLR+
Sbjct: 224 QPSTEA-----------------------AGENPLEFLRDQP------------------ 242
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 243 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLL------------------- 273
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 274 -----------------------------QLKALGFPESLVIQAYFACEKNENLAANFLL 304
Query: 423 DHMHEFED 430
F+D
Sbjct: 305 S--QNFDD 310
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 186/409 (45%), Gaps = 78/409 (19%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
+ + + L + D+ +LR +V NP+ L+P+L+ + +
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLL------------SLRQVVSGNPEALRPLLENISARY 287
Query: 340 PH---------------LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA---- 379
P L+ + ++ D + ++ VEG + V G+ A+A + Q
Sbjct: 288 PQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEG 347
Query: 380 ---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 424
V TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 348 SFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 160/359 (44%), Gaps = 99/359 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F IE +P D V+ VK I+ Q +PA QQ LIH GK+LKD T L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + EN F+VVM++K+K S + TS+ P T+T T T P P+ +
Sbjct: 58 EYNIKENDFIVVMVSKAKGS---------------RPTSALPSTATAQTPTVPPPVPSTS 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S S P + + P A + S+ +AA+ V Q+
Sbjct: 103 AVSSSETSTPLSVSSSTRPTTEGTMASGSSGTSTTPSSTAEAAN-----------VGQLC 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + E V L+AA+ NP+RAVEYL +GIPE P
Sbjct: 152 DMG---FPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLVNP------------------- 189
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
AA APT+G AG+L+ LRN
Sbjct: 190 --TSAAAAPTTG------------------GPSAGSLEQLRNHP---------------- 213
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QF + R +V+ NP L +LQ++G QNP L+RLI E+Q+ FL+++NE
Sbjct: 214 ------------QFASFREVVRTNPAALPALLQQIGGQNPELLRLIHENQSQFLQMLNE 260
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
+ ++ EE A++RL MGF+R+ + + AC KNE LAAN L+D M+E
Sbjct: 351 IMLSEEEAAAVDRLCDMGFERSEAAQAYLACEKNEALAANLLMDSMNE 398
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 146/275 (53%), Gaps = 50/275 (18%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
+ G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P E+ A P
Sbjct: 110 ITGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQ 166
Query: 223 VARASAGGQ----AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGAGTL 277
+ AGGQ +PP Q+PA + S P +A P PQG G +AG G
Sbjct: 167 PRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQG----GLSAGGG-- 218
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
Q S + + L QFQALR VQ NP +L +LQE+G+
Sbjct: 219 ------QSASNVLQGLSQLP---------------QFQALRAAVQQNPGLLPSLLQEIGQ 257
Query: 338 QNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVL--GQLASAMPQAVTVTPEEREAIERLE 394
NP L++LI ++Q +F+ L+N+P + G G L G + ++ VT EEREAI+RL+
Sbjct: 258 HNPELLQLINQNQQEFVDLLNQPPQPIGSGQELPPGTV------SIQVTQEEREAIDRLK 311
Query: 395 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
A+GF V++ + AC+KNE LAAN LL + E
Sbjct: 312 ALGFPEGEVIQAYLACDKNETLAANLLLSSADDPE 346
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ + E++FVVVM++K
Sbjct: 60 DYSIQESNFVVVMVSK 75
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 185/409 (45%), Gaps = 78/409 (19%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
+ + + L + D+ +LR +V NP+ L P+L+ + +
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLL------------SLRQVVSGNPEALAPLLENISARY 287
Query: 340 PH---------------LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA---- 379
P L+ + ++ D + ++ VEG + V G+ A+A + Q
Sbjct: 288 PQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEG 347
Query: 380 ---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 424
V TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 348 SFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 185/409 (45%), Gaps = 78/409 (19%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTEGTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
+ + + L + D+ +LR +V NP+ L P+L+ + +
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLL------------SLRQVVSGNPEALAPLLENISARY 287
Query: 340 PH---------------LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA---- 379
P L+ + ++ D + ++ VEG + V G+ A+A + Q
Sbjct: 288 PQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEG 347
Query: 380 ---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 424
V TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 348 SFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 141/438 (32%), Positives = 205/438 (46%), Gaps = 81/438 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ GK+L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+++ +FVVVM TK K +++ +A ++APP +
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG--------TTAPPALDPGPDPCRRHRLRPP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP PE+ P P P + SS +++ +A SNLV G + E+ V +I+
Sbjct: 113 PPPPRPENRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RAVEYL TA P A A+ A PA T
Sbjct: 173 LMG---YEREQVVAALRASFNNPDRAVEYLL------TAAGPAAEATPASSAPAAPAGT- 222
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+PA G NP L FLRN
Sbjct: 223 ----GSPAGAEG--VNP-------------------LSFLRNQP---------------- 241
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL------ 354
QFQ +R ++Q N +L +LQE+G++NP L+R+ +T
Sbjct: 242 ------------QFQQMRQLIQQNAALLPTLLQEIGRENPELLRVTLAARTQRCSASTSA 289
Query: 355 -RLINEPVEGGEGNVLGQLASAMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
LI + G A P + + VT +E+EAIERL+ +GF LV++ FFAC K
Sbjct: 290 PHLIFXXXGATAAGMAGGTAGENPMRYIQVTAQEKEAIERLKELGFPEGLVIQAFFACEK 349
Query: 413 NEELAANYLLDHMHEFED 430
NE LAAN+LL F+D
Sbjct: 350 NENLAANFLLQ--QNFDD 365
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 114/198 (57%), Gaps = 25/198 (12%)
Query: 77 SKVSSSGASTVSAA--PANQAQTTS--SAP--PTSTQPTTTSQTPAPTVAPPQSVPESAP 130
+K SSSGAST +AA PA Q +AP P ++ T +Q P T +
Sbjct: 1 AKASSSGASTATAAKVPATPGQVCGHPAAPVVPATSVARTPTQAPVATAETAPPSAQPQ- 59
Query: 131 PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A A S +DVY QAASNLV+G+NLE +QQILDMGGG+W+R+
Sbjct: 60 -------------AAPAATLAASGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERD 106
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PPAQTQAQQPAA 246
TV+RALRAAYNNPERA++YLYSGIP PPVA A AGGQ N PAQ P
Sbjct: 107 TVVRALRAAYNNPERAIDYLYSGIPVNVETPPVAGAPAGGQQTNQQAPSPAQPAVASPVQ 166
Query: 247 PAPTSG-PNANPLDLFPQ 263
P+ S P+ANPL LFPQ
Sbjct: 167 PSAASARPDANPLILFPQ 184
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 199/441 (45%), Gaps = 78/441 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL F +E V D+K ++ + V P QQ LI+ G+VL + L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM K+ S++ V+A +T + T P+ ++T T
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAA-----IKTAKPSEQTRASPSAAAETIKKTEE 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ-AASNLVAGSNL------- 172
P + PPPAA A A A A P++ ++ N++ +
Sbjct: 115 PKRQEKAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAAS 174
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-QTAVPPVARASAGGQ 231
E+ VQ+I+ MG D V RAL A++NNP+RA+EYL GIP+ A+PP+
Sbjct: 175 ESLVQEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPL-------- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLD-----LFPQGLPNMGSNAGAGTLDFLRNSQQV 286
PT P+ NP+ G G L+FLR
Sbjct: 224 -----------------PTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDP-- 264
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
+F +R +++ P++L +L +G+ NP L+ +I
Sbjct: 265 --------------------------RFIQMRRVIRQRPELLSSVLARIGETNPVLLSII 298
Query: 347 QEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEV 406
+EHQ DF+ ++NEP + G + A Q +++T EE AIERL A+GF R +VL+
Sbjct: 299 REHQDDFVAMLNEPEDEGSEEAPSEGHEA--QEISLTEEESNAIERLVALGFPRQIVLQA 356
Query: 407 FFACNKNEELAANYLLDHMHE 427
+ AC +NEE A++L HM +
Sbjct: 357 YIACERNEEQTADFLCRHMED 377
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 140/269 (52%), Gaps = 71/269 (26%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------- 56
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQV 286
+A PP Q +++ P P P NPL+ FLR Q
Sbjct: 57 -GSPEAERPPVQ-ESRAPEQPQVEGQPGENPLE-------------------FLREQPQ- 94
Query: 287 SMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346
FQ +R ++Q NP +L +LQ+LG++NP L++ I
Sbjct: 95 ---------------------------FQNMRQVIQQNPALLPALLQQLGQENPQLLQQI 127
Query: 347 QEHQTDFLRLINEPVEGGEGNV---LGQLASAMPQA--VTVTPEEREAIERLEAMGFDRA 401
+HQ F++++NEP+ G G++ +G + PQ + VTP+E+EAIERL+A+GF +
Sbjct: 128 SQHQEQFIQMLNEPL-GELGDLEGEMGAIGDESPQMNYIQVTPQEKEAIERLKALGFPES 186
Query: 402 LVLEVFFACNKNEELAANYLLDHMHEFED 430
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 187 LVIQAYFACEKNENLAANFLLS--QNFDD 213
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 130/269 (48%), Gaps = 70/269 (26%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASA 228
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------ 51
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSM 288
PP P +PA + + +G L+FLRN
Sbjct: 52 ------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEFLRNQP---- 93
Query: 289 MFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 348
QFQ +R ++Q NP +L +LQ++G++NP L++ I +
Sbjct: 94 ------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQ 129
Query: 349 HQTDFLRLINEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERL 393
HQ F++++NEPV+ G + + S + VTP+E+EAIERL
Sbjct: 130 HQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERL 189
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLL 422
+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 190 KALGFPEGLVIQAYFACEKNENLAANFLL 218
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 178/406 (43%), Gaps = 61/406 (15%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A + + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN---------------ETSTSGNSGTSNT 112
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ S S + +G EA++Q I++MG ++R V ALRA++NNP RA
Sbjct: 113 SGVSGSGSGSGAVTSGGGDFASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRA 169
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
VEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 170 VEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAA 225
Query: 267 NMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQ 326
+QQ A+ + RLL RT +Q NP+
Sbjct: 226 ---------------AAQQGESGAGSGAAGGAD--QGDDAQLRLL------RTALQTNPE 262
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLI---NEPVEGGEGNVLGQLASAMPQ----A 379
++QP+L++L NP + LIQ+ F+R E +E + A
Sbjct: 263 LIQPLLEQLAASNPQVATLIQQDPEAFVRTFLGEGEDIEFDDAEGELAAGEGGLGAGEVA 322
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
+ ++ ++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L M
Sbjct: 323 IQLSEQDESAIGRLCELGFDRNLVIQVYIACDKNEEVAADILFRDM 368
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 173/371 (46%), Gaps = 64/371 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE++ +KV +K+ I +G D Y A Q LI+ GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E++FVV+M+TK+K + + A PA Q + A + + + TP T
Sbjct: 60 EYKIQESNFVVIMVTKAKPKAPEKAP-EAKPAEQPTPSQPAATPAAASSEPAATPTET-- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA---PAPAPAPVSSVSDVYGQ--------AASNLVAG 169
P + P +PAPA A + +PA V+ + A S LV G
Sbjct: 117 -----PAAVDQPMSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTG 171
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++ A
Sbjct: 172 ESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEPVPEAPVAAPPA 228
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
P A Q AP + S AG L FLR++ Q M
Sbjct: 229 AGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLHFLRSTPQFETM 275
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
R +VQ+NP +L LQE+ + NP L ++I E+
Sbjct: 276 ----------------------------RRLVQSNPGLLSNFLQEIRQANPRLFQMINEN 307
Query: 350 QTDFLRLINEP 360
Q F++++N+P
Sbjct: 308 QERFVQMLNDP 318
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 88/464 (18%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT 57
M++ KTL + ++ + P+ V ++K+ + + PA Q LI G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 58 -TLEENKVAENSFVVVMLTK-SKVSSSGASTVSAAPAN-----QAQTTSSAPPTSTQPTT 110
L + + ++ F+VVM + + S ++VS+A A QA S A ++T +
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTASVSSADAQLKTPLQAGLASEATDSATIASE 120
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
S+ P +PP SV +A + PA + A + P + G A+S L G
Sbjct: 121 ASRG-IPADSPPASV-------SAKSSGATPAESGALSQTPQVEGTTTSGIASSGLAVGD 172
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P T
Sbjct: 173 EYSLYMNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANT------------ 217
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
++ P +A++P Q LP A AG R ++ V
Sbjct: 218 ESLTEPLNDEARRPEH----------------QTLP-----AQAGMDQTSRPAEAVHPEL 256
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
S L I R L F LR +Q +P +Q +L EL + NP L+ +IQ +Q
Sbjct: 257 QQSRSELDI--------IRRLPHFALLRRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQ 308
Query: 351 TDFLRLINEPVEGGE-GNVLGQLASAMPQ---------------------AVTVTPEERE 388
DF+ ++NEPV E G + QL + Q + V+ EE E
Sbjct: 309 ADFINMLNEPVTDEEAGREMRQLRELVAQQGRGNMYAGADAPSMEPTNAIRIEVSQEEAE 368
Query: 389 AIERLEA----MGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
+ +LE MG R L+V+ +C++N ELAA +L+D++ ++
Sbjct: 369 QLRQLEQMMEPMGVSRDTCLQVWLSCDRNTELAAMHLMDNLEDY 412
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 131/261 (50%), Gaps = 66/261 (25%)
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGG 230
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 2 VTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAP 58
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMF 290
Q+ A +SG G P L+FLRN Q
Sbjct: 59 QSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQ----- 92
Query: 291 YLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 350
FQ +R ++Q NP +L +LQ++G++NP L++ I +HQ
Sbjct: 93 -----------------------FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQ 129
Query: 351 TDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 401
F++++NEPV+ + + S + VTP+E+EAIERL+A+GF
Sbjct: 130 EHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 189
Query: 402 LVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 190 LVIQAYFACEKNENLAANFLL 210
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 177/406 (43%), Gaps = 61/406 (15%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A + + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN---------------ETSTSGNSGTSNT 112
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ S S + G EA++Q I++MG ++R V ALRA++NNP RA
Sbjct: 113 SGVSGSGSGSGAVTSGGGDFALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRA 169
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
VEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 170 VEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAA 225
Query: 267 NMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQ 326
+QQ A+ + RLL RT +Q NP+
Sbjct: 226 ---------------AAQQGESGAGSGAAGGAD--QGDDAQLRLL------RTALQTNPE 262
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLI---NEPVEGGEGNVLGQLASAMPQ----A 379
++QP+L++L NP + LIQ+ F+R E +E + A
Sbjct: 263 LIQPLLEQLAASNPQVATLIQQDPEAFVRTFLGEGEDIEFDDAEGELAAGEGGLGAGEVA 322
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
+ ++ ++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L M
Sbjct: 323 IQLSEQDESAIGRLCELGFDRNLVIQVYIACDKNEEVAADILFRDM 368
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 189/447 (42%), Gaps = 104/447 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
++V K K ++V E + V DVK+ + + D A Q LI GKVL+D
Sbjct: 2 VQVVFKDFKKNKETLDVDLEHESVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAKPF 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + EN V++M++K K + PA +
Sbjct: 59 AETGLKENDHVIMMVSKKK----------SVPAKE------------------------- 83
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P PE+ P PA V V + + V G TV++I
Sbjct: 84 --PVKEPETEPVATTETPAATTTEPAPAGAGSV-----VADNSTPDFVTGQQRNETVERI 136
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RALRAA+NNP+RAVEYL +GIP A A P QT
Sbjct: 137 MEMG---YERAQVERALRAAFNNPDRAVEYLITGIP------------AAQPAEQPAEQT 181
Query: 240 --QAQQPAAPAPTSGPNA-NPLDLFPQGLPNMGSNAGA----GTLDFLRNSQQVSMMFYL 292
QAQ A+P + P + DLF Q L N G +AGA GT + S+
Sbjct: 182 PEQAQSSASPEHSEPPEQPHEDDLFAQALGNNGQSAGAEGTPGTPGTASAAPPGSIG--- 238
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
L + D+ ALR +V NP+ L P+L+ L + P L I +
Sbjct: 239 ----LTVEDLM------------ALREVVSGNPEALAPLLENLSNRYPQLREQIMANPEV 282
Query: 353 FLRLI-----------------NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEA 395
F+ ++ +E + GE G +S Q V ++ + +A+ERL
Sbjct: 283 FVSMLLEVVGENLTHMDEFTAESEAAQSGEAPGAGGPSSESAQIVQLSEHDEQAVERLCE 342
Query: 396 MGFDRALVLEVFFACNKNEELAANYLL 422
+GF+R LV++V+FAC KNEE+ AN L
Sbjct: 343 LGFERTLVIQVYFACEKNEEITANMLF 369
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 190/441 (43%), Gaps = 113/441 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLIHQGKVLKDVT 57
M++ VKTL+ F++E +P V D K IE SD VY A Q LI+QGK+L+D
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+EE ++ E F+V+M+TK KV +S T S TPA
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKPEPTPAAPAAAAS---------TESSTPAE 111
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ + + + P A A AP +NL+A E+ V+
Sbjct: 112 STSSTDATTTPSQPVATEAAAPV-------------------NPHVANLMAMGFPESQVK 152
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
Q AL AA+NNPERAVEYL +GIPE+ +A+ + +A A
Sbjct: 153 Q----------------ALSAAFNNPERAVEYLMNGIPEEL----LAQMTTTPEAAAASA 192
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
T A AAP T+ S + TL+ +RN
Sbjct: 193 GTTADASAAPTVTA-----------------PSRSVGSTLEQIRNEP------------- 222
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ +RT+++ NPQ+L +Q+L +NP I +Q +F+ +I
Sbjct: 223 ---------------QFQQIRTLIRNNPQLLSQFIQQLQIENPEAFAAISANQQEFINMI 267
Query: 358 NEPVEG----------------GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 401
NEP E G+G + Q + +T E+R +IERL+ +GF
Sbjct: 268 NEPGEAQPAGDDSAEAAAPATPGDGPRVRQTEDGRVM-LEITAEDRASIERLKELGFPEQ 326
Query: 402 LVLEVFFACNKNEELAANYLL 422
VL+ FFAC+KNE AAN+LL
Sbjct: 327 AVLQAFFACDKNENDAANFLL 347
>gi|195604818|gb|ACG24239.1| hypothetical protein [Zea mays]
Length = 98
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 343 MRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 400
M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI RLE MGFDR
Sbjct: 1 MQLIQENQAEFMRLISEPLEGDEENEMMLDQMADA-TETIAVTPEENEAILRLEGMGFDR 59
Query: 401 ALVLEVFFACNKNEELAANYLLDHMHEFED 430
ALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 60 ALVLEVFFACNKNEQLAANYLLDHMHEFDN 89
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 172/393 (43%), Gaps = 77/393 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V D+KK I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKS-KVSSSGAST-----VSAAPANQAQTTSSAP------------ 102
KV E F+VVMLT+ V+ SG+ T V++A Q T++ P
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ- 161
PTS T +S+ E P + A A A A S D+ G+
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVE---PASTAAVAGAARATDVDVTASDYSSIDLVGEL 176
Query: 162 --------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +G
Sbjct: 177 ANASLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITG 233
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP++ ++ Q Q S ++ +++
Sbjct: 234 IPQEESLFNAGHDDEDVARAGSLLQQQVGGGGDGGSAS---------------DLQTDSS 278
Query: 274 AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQ 333
A +FLR+ QF +R+++ NP +L +LQ
Sbjct: 279 ADPFEFLRSQP----------------------------QFLQMRSLIYQNPHLLHAVLQ 310
Query: 334 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 366
++G+ NP L++LI E+Q FL ++N+P+EG G
Sbjct: 311 QIGQTNPALLQLISENQDAFLNMLNQPLEGEVG 343
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 37/43 (86%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ +TP++++AIERL+A+GF LVL+ +FAC K+EELAAN+LL
Sbjct: 422 IRLTPQDQDAIERLKALGFPETLVLQAYFACEKDEELAANFLL 464
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 124/450 (27%), Positives = 184/450 (40%), Gaps = 109/450 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K I+V+ D V K+ + + + ASQ ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K SA P+S QP +
Sbjct: 58 SLKIKEGDAIIFMISKTK--------------------KSATPSSEQPQASK-------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + +P PA A + A A + ++ Q G E ++ I+
Sbjct: 90 PEKESSKESEDKGSPTPA---AEEESGAGASGAQAGSIFAQ-------GDERENNIRNIM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
+MG ++R V ALRAA+NNP RAVEYL +GIPE P P AS+GG P +
Sbjct: 140 EMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQAPQPNYSASSGG--AQPAVEA 194
Query: 240 QAQQPAAPAPTSGPNANPLDLF-------PQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
++ G N LF Q +A G D L Q+ +
Sbjct: 195 ESTHNEDEENEHGEN-----LFEAAAAAAAQEGGAGDQDAAEGAGDDLNEENQMRL---- 245
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
LR +Q NP+++QP+L++L NP + LIQ+
Sbjct: 246 ------------------------LRAALQTNPELIQPLLEQLAASNPQVAALIQQDPEG 281
Query: 353 FLRLINEPVEGGEGNVLG---------------QLASAMPQAVTV--TPEEREAIERLEA 395
F+R G G L P V + T ++ AI RL
Sbjct: 282 FIRSF-----LGSGEDLDFEFEEGEGDAEGGESGGQGEQPGTVRIELTEQDESAINRLCE 336
Query: 396 MGFDRALVLEVFFACNKNEELAANYLLDHM 425
+GFDR LV++V+ AC+KNEE+AA+ L M
Sbjct: 337 LGFDRNLVIQVYMACDKNEEVAADILFRDM 366
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/437 (27%), Positives = 192/437 (43%), Gaps = 80/437 (18%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
+K L+ F +E++ V +K+ +E +G D YPA Q LI+ GK+ +D TTLE +
Sbjct: 6 LKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESYNI 64
Query: 65 AENSFVVVMLTK-----SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ F+V+M+TK V S + V + ++ +S +T S A
Sbjct: 65 DDKKFLVIMVTKPKAPPPPVGPSDPTIVETEETPAEEPAATTESSSQSTSTPSTESAAAA 124
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ + + + A PA AP SV G A S LV G V+ I
Sbjct: 125 GTNTTTTTTTTSSSQSSAASNTQSTPATQAAPGGSV----GSAESLLVMGEEFNRMVENI 180
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RALRA++NNP AV+YL GIP P Q
Sbjct: 181 MEMG---YERSQVERALRASFNNPYTAVQYLVDGIPPNLEEP-------AAQPAQGGDGG 230
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
+Q A + P+ +P L+FLR+ Q
Sbjct: 231 GEEQVVAEG-EADPDEDP-------------------LNFLRSQPQ-------------- 256
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
F+ +R M+++NP +L ++++G+ NP L+++IQ++Q F+R+
Sbjct: 257 --------------FEQMRQMIRSNPSLLDAFIRQIGQTNPQLLQVIQQNQEAFVRMTER 302
Query: 360 PVEGGEGN-----------VLGQLASAMPQAVTVTPEEREAIERLEAMG-FDRALVLEVF 407
+ G A+ A+ V+P++R+AIERL+A+G F +V++ +
Sbjct: 303 RGQFWRWKHSGGSGNQGGDGSGGRAAPGQNAILVSPQDRDAIERLKALGNFPEDVVIQAY 362
Query: 408 FACNKNEELAANYLLDH 424
FAC KNE LAA +L
Sbjct: 363 FACEKNENLAAEFLFSQ 379
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 190/443 (42%), Gaps = 130/443 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-----YPASQQM-LIHQGKVLK 54
MKV VK++ G +FE+E+ V D+KK I V+ DV +S+ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D +QT SS P +
Sbjct: 61 D---------------------------------------SQTISSLGP---------KI 72
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
+ PP+ V + P PA V+S G + ++ G +LEA
Sbjct: 73 SFFVMMPPEGVTLKKVEVSKPQDQPA-----------VTS-----GLQNNTILMGEDLEA 116
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+V++I MG + V RALR A+NNP+RAVE LY+G + A+ Q
Sbjct: 117 SVREICGMG---FAESEVRRALRLAFNNPDRAVEILYNGASDD------AQQMQNEQPAE 167
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
Q Q P AP+ S P +D L S AGAG Q+ M+
Sbjct: 168 QQQQQQGASPEAPSHGSMPLRFNMD----ALAVNASEAGAG-------GNQLEML----- 211
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
R QF +R VQ+ P +L +L ++G+ NP L+ I ++Q +F+
Sbjct: 212 --------------RRDPQFAFVRHCVQSQPSLLPELLLQIGRVNPSLLATINQNQAEFV 257
Query: 355 RLINEPVEGGEGNVLGQLASAMPQ-----AVTVTPEEREAIERLEA----MGFDRALVLE 405
R++NEP G N PQ + +T EE + +ERLE MG DR VLE
Sbjct: 258 RIVNEP---GMQN---------PQEPSQHTIQLTREELDQVERLEQLVVPMGLDRQAVLE 305
Query: 406 VFFACNKNEELAANYLLDHMHEF 428
+ AC+K+E+LAANYLL+++ +
Sbjct: 306 AWLACDKDEQLAANYLLNNLEDI 328
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 165/358 (46%), Gaps = 75/358 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDV 302
QPA A AG L+FLR+
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQP------------------ 239
Query: 303 FWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 240 ----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 190/434 (43%), Gaps = 69/434 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K +E++ + D K + +++ D+ Q LI GKVLKD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +N V++M++K K + S A+ V+ P Q + P Q + Q P+ T A
Sbjct: 58 SCGLKDNDQVIMMISKKKATPS-ATKVTEPP----QQSEEQP---VQEPSQEQEPSGTTA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + +AP A P P V GS TV++I+
Sbjct: 110 EPAPIAPAAPVAAEPESTSTPG-----------------------FVTGSERNETVERIM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V RALRAA+NNP+RAVEYL GIPE PP + + Q Q
Sbjct: 147 EMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQQPPPPQQESQSAETQQQQQQQ 203
Query: 241 AQQPAAPAP---TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+ P ++ DLF Q G+G N+ + LL
Sbjct: 204 QESERQNQPEAESTNEQYEGEDLFAQAAQGTRDTTGSGA---DSNASAPGSIGLTMEDLL 260
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
ALR +V NP+ L P+L+ L + P L I + F+ ++
Sbjct: 261 ------------------ALRQVVSGNPEALAPLLESLSTRYPQLREQIMANPEVFISML 302
Query: 358 NEPVEGGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFAC 410
+ V G N + + + A + +T ++ +AI RL +GF+R LV++V+FAC
Sbjct: 303 LDAV-GDNLNAMENITEPVENAEPTEAPSLDLTEDDEQAISRLCELGFERTLVIQVYFAC 361
Query: 411 NKNEELAANYLLDH 424
+KNEE+AAN L +
Sbjct: 362 DKNEEIAANMLFND 375
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 193/435 (44%), Gaps = 112/435 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQADSLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L++ + + + V+V+ +K+ S Q +S P ++T PT+
Sbjct: 56 LLKDYSDIKDGDKVIVISSKTSDPSKN------------QDPNSQPSSTTTPTS------ 97
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-VYGQAASNLVAGSNLEAT 175
PPQ PP P P+ + VS+ Y +S V GS LE +
Sbjct: 98 ---KPPQ------PPTQDDTPN---------QPSSGNVVSEQTYENVSSKFVMGSELEQS 139
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I +MG ++R V RA+ AA+NNP+RAVE+L + GN
Sbjct: 140 INRICEMG---FERPLVERAMAAAFNNPDRAVEFLST--------------------GNI 176
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFAS 295
PA ++ PN N +L G AG L L++
Sbjct: 177 PA------------SNMPNINAQNL---ATAEHGDPAGDDVLQMLQS------------- 208
Query: 296 LLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 355
+ F L Q V+++P +LQ ML+ LG+ NP L++ I + Q +F+
Sbjct: 209 ---------HPMFEQLIQ------AVRSDPNLLQQMLENLGQTNPELLQAIIQRQDEFVE 253
Query: 356 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
L++ P +T+TP E E+I+RLE +GF R V+E + AC+KNEE
Sbjct: 254 LLSSSARAAATADQYSTTENNPNIITLTPVEMESIQRLEGLGFSRPAVIEAYLACDKNEE 313
Query: 416 LAANYLLDHMHEFED 430
LAANYLL++ ++F++
Sbjct: 314 LAANYLLENFNDFQE 328
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 142/271 (52%), Gaps = 26/271 (9%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G A + + MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 135 SALAMGEQRAAAIAGMEAMG---FARDQIDAAMRAAFFNPDRAVEYLLNGIPESARQEQR 191
Query: 224 ARASAGGQAGNPPAQTQAQQPA--APAPTSGPNAN--PLDLFPQGLPNMGSNAGAGTLDF 279
A A++ PA TQ QQPA A A T+ A+ P++LF G G
Sbjct: 192 AAAAS-----PQPAPTQGQQPADTAGAETTQQQASDEPVNLFEAAAQAGGGGRGGAGG-- 244
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
++ + + + R QFQ LRT+VQ PQ+L+P+LQ + N
Sbjct: 245 RGAGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQLRTVVQQQPQMLEPILQSVAAGN 304
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAM 396
P L ++I +H F++L+ E + G+ A+P Q ++VT EER+AIERL +
Sbjct: 305 PQLAQIITQHPEQFMQLLAE--DAGDD-------VAIPPGAQEISVTAEERDAIERLCRL 355
Query: 397 GFDRALVLEVFFACNKNEELAANYLLDHMHE 427
GFDR LV++ +FAC+KNEELAAN+L D E
Sbjct: 356 GFDRDLVVQAYFACDKNEELAANFLFDQPDE 386
>gi|6688552|emb|CAB65692.1| Rad23 Protein [Solanum lycopersicum var. cerasiforme]
Length = 65
Score = 122 bits (307), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 63/65 (96%)
Query: 366 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
GNVLGQ A A+PQAVTVTPEEREAIERLEAMGFDRALVLEV+FACNKNEELAANYLLDH+
Sbjct: 1 GNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHL 60
Query: 426 HEFED 430
HEF++
Sbjct: 61 HEFDE 65
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 26/219 (11%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A SSAPP ++ PT ++ A + A P
Sbjct: 65 RIDEKNFVVVMVTKAK----------------AGQGSSAPPEAS-PTAAPESSATSPAAP 107
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP +P+ AP +P VS G AAS LV GS E +
Sbjct: 108 ASGMSHPPPATREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 140/304 (46%), Gaps = 102/304 (33%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 79 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 129
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
S + G+ +QPA A AG L+FLR
Sbjct: 130 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 162
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
+ Q FQ +R ++Q NP +L +LQ+LG++NP
Sbjct: 163 DQPQ----------------------------FQNMRQVIQQNPALLPALLQQLGQENPQ 194
Query: 342 LMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIER- 392
L++ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIER
Sbjct: 195 LLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERV 253
Query: 393 --------------------------LEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426
L+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 254 RSLAKEPLMVGSPMLPSFLPLPIFPQLKALGFPESLVIQAYFACEKNENLAANFLLS--Q 311
Query: 427 EFED 430
F+D
Sbjct: 312 NFDD 315
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 14/213 (6%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
G ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 119/440 (27%), Positives = 191/440 (43%), Gaps = 80/440 (18%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + +T + PP + + TT P +
Sbjct: 64 DGDQVVFMVSQKKST---------------KTKVTEPPIAPESATT---------PGREN 99
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS--NLVAGSNLEATVQQILDMG 183
A P + APA P + + ++AS V G+ T+++I++MG
Sbjct: 100 STEASPSTDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG 159
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE P + +A A T A+Q
Sbjct: 160 ---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQ 216
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVF 303
PA DLF Q G NA +G L + + + L + D+
Sbjct: 217 PAED-----------DLFAQAA--QGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLL 263
Query: 304 WYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQE 348
+LR +V NP+ L P+L+ + + P L+ + +
Sbjct: 264 ------------SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGD 311
Query: 349 HQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDR 400
+ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R
Sbjct: 312 NMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFER 371
Query: 401 ALVLEVFFACNKNEELAANY 420
LV++V+FAC+K + Y
Sbjct: 372 DLVIQVYFACDKKRRSCSKY 391
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 191/426 (44%), Gaps = 93/426 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K LK ++ V+P D V K+ + + DV P SQ ++ GKVL+D T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKVAAAR--DVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E KV E ++ M+++ K + + V+A A++A + S P TSTQ
Sbjct: 58 EFKVKEGDSIIFMISQKKSPAPAPAPVAAPAASEAVSAPSEPETSTQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+A AA A PA S SD + A +Q ++
Sbjct: 105 ----TPETASSTAANASTPA-------------SSSD-FASGQDREAA-------IQNMM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R + RALRAA+NNP RAVEYL +GIPE A +A PP Q
Sbjct: 140 EMG---YERPQIERALRAAFNNPHRAVEYLITGIPE-----------ALTRAEQPP---Q 182
Query: 241 AQ-QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
AQ +PAA A + + + NM A A D +Q+ +
Sbjct: 183 AQEEPAAHAEAQTEHEDESNQEANVHENMFDVAEAAAGDEPVPAQEDRLAL--------- 233
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
LR +Q+ P+++Q +LQE+ NP +LI++ F+ +
Sbjct: 234 -----------------LRAAIQSEPELVQSVLQEIAASNPQAAQLIEQDPEAFISTL-- 274
Query: 360 PVEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
G+ + G + V ++ + AI RL +GFDR +V++V+ AC++NEE+
Sbjct: 275 ---LGQHDDAGYEIEEEEEGVVRVQLSESDESAIRRLCELGFDRDMVVQVYLACDRNEEV 331
Query: 417 AANYLL 422
AA+ L
Sbjct: 332 AADILF 337
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 137/283 (48%), Gaps = 52/283 (18%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 135
Query: 226 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 285
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 136 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 182
Query: 286 VSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH---- 341
+ + L + D+ +LR +V NP+ L P+L+ + + P
Sbjct: 183 AAQGGPPGSIGLTVEDLL------------SLRQVVSGNPEALAPLLENISARYPQLREH 230
Query: 342 -----------LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTV 382
L+ + ++ D + ++ VEG + V G+ A+A + Q V
Sbjct: 231 IMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDY 290
Query: 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 424
TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 291 TPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 333
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 132/261 (50%), Gaps = 75/261 (28%)
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQE 50
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
++QPA A AG L+FLR+
Sbjct: 51 SQVSEQPATEA-----------------------AGENPLEFLRDQP------------- 74
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++
Sbjct: 75 ---------------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQML 119
Query: 358 NEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFA 409
NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FA
Sbjct: 120 NEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFA 178
Query: 410 CNKNEELAANYLLDHMHEFED 430
C KNE LAAN+LL F+D
Sbjct: 179 CEKNENLAANFLLS--QNFDD 197
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 184/444 (41%), Gaps = 68/444 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ + + K I + + D+ Q LI+ GK+LK+ T+
Sbjct: 2 VSLIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATIL 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + +N ++ M++K K + ASTV P S TT +T A
Sbjct: 59 NSGLKDNDHIIFMISKKKKKTEPASTVKVTE-----------PASV--TTNVETQAE--G 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + P PA + A A S+ A V G+ T+Q+I+
Sbjct: 104 TPNSDPSANATPEVPAATTSNAAAGDDTETTTSA-------ADPGFVVGTERNETIQRIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ------TAVPPVARASAGGQAGN 234
+MG + RE V ALRAA+NNP+RAVEYL GIPE + + G + N
Sbjct: 157 EMG---YQREEVEAALRAAFNNPDRAVEYLLMGIPEHLQHQQPQQLQQTTIQTEGATSAN 213
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
+ A A + N D P G + G D L Q VS
Sbjct: 214 MELPAEDDLFAQAARGNQANQQSTDDTPPG------SIGLTMEDLLALRQVVSGNPEALP 267
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
LL L ++ LR + ANP++ ML E N L +
Sbjct: 268 PLLE----------NLTTRYPQLREQIMANPEVFVSMLLEAVGDN--LQHSLGNDLDGIS 315
Query: 355 RLINEPVEGGEGNVLGQLASAM-------PQA---------VTVTPEEREAIERLEAMGF 398
L P G V + SA+ P A +++T ++ +AI RL +GF
Sbjct: 316 ELDQHPTANTNGEVTAEHDSAIVTETNEAPAAGEQPSNNYNISLTEQDEQAIGRLCELGF 375
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
+R+LV++V+FAC+KNEE+AAN L
Sbjct: 376 ERSLVVQVYFACDKNEEIAANMLF 399
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 74/97 (76%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
EQ A ASA QA + PA QA PTSG
Sbjct: 218 EQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 184/438 (42%), Gaps = 97/438 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ V KK + + D SQ LI+ GKVL+D ++E
Sbjct: 2 VSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSIE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + V+ M++K K STV+ T+PT + + AP VA
Sbjct: 59 GCGLKDGDQVIFMISKKK------STVTQV---------------TEPTESKEVAAPEVA 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V ES A APA + PV++ +D V GS V +I+
Sbjct: 98 ASAPVAESTET----ATEAAPAHSTTEGQQPVTASND------PGFVVGSQRNEAVDRIM 147
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RALRAA+NNP+RAVEYL GIP+ +
Sbjct: 148 EMG---YEREEVERALRAAFNNPDRAVEYLLMGIPDHLQQQQQQPQVT----------QE 194
Query: 241 AQQPAAP----APTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFA 294
AQ+P + A T+G + N DLF Q N NA G+ Q +
Sbjct: 195 AQEPTSGSTEVAQTAGEQGDINEDDLFAQAAQN---NATDGSTGASAAGSQPGSIGLTME 251
Query: 295 SLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 354
LL ALR +V NP+ L P+L+ L + P L I + F+
Sbjct: 252 DLL------------------ALRQIVAGNPEALGPLLENLSTRYPQLREQILSNPEVFV 293
Query: 355 RLINEPVEGGEGNVLGQLASAMPQA--------------------VTVTPEEREAIERLE 394
++ E V G+ N+ G + S +++T + +AI RL
Sbjct: 294 SMLLEAV--GD-NLQGSMDSEFDNLGLTEGAEGDEGEESELAQPPISLTEADEQAISRLC 350
Query: 395 AMGFDRALVLEVFFACNK 412
+GF+R+LV++V+FAC+K
Sbjct: 351 ELGFERSLVVQVYFACDK 368
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 186/442 (42%), Gaps = 64/442 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K ++++ V D KK I + + SQ LI+ GKVL++ +T+
Sbjct: 2 VSITFKDFKKEKIPLDLEGSVTVLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTIG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + V+ M++K K S+G A P + ++ + Q TVA
Sbjct: 59 DCGLKDGDQVIFMISKKK--STGTKVTEATPVAASTAADASATSVAAVAEPEQ---QTVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ + A P AP V SD V GS V++I+
Sbjct: 114 SEQATESNGNEEA---PQQEEAPQQGGQQEQVQVQSD------EGFVVGSQRNEAVERIM 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V RA+RAA+NNP+RAVEYL GIPE + +
Sbjct: 165 EMG---YERDEVNRAMRAAFNNPDRAVEYLLMGIPEHLQQQEQQQEQQ------QEQHVE 215
Query: 241 AQQPAAPAPTSGP---NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+ + A T+ + +DLF Q G ++ A + LL
Sbjct: 216 STEVATTEETNDNEDVDNGEVDLFTQAAQGNGDSSAAPRGAAGAAGGPPGSIGLTMEDLL 275
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
ALR +V NP+ L P+L+ L + P L I + F+ ++
Sbjct: 276 ------------------ALRQVVAGNPEALAPLLENLSIRYPQLREQILANPEVFVSML 317
Query: 358 NEPVEGGEGNVLGQL--------------ASAMPQA---VTVTPEEREAIERLEAMGFDR 400
E V V+G+ ASA Q V ++ E+ +AI RL +GF+R
Sbjct: 318 LEAVGDNLQGVMGEEFEGLAGGELGGNDDASAAGQEQHIVQLSEEDEQAISRLCELGFER 377
Query: 401 ALVLEVFFACNKNEELAANYLL 422
LV++V+FAC+KNEE+AAN L
Sbjct: 378 NLVIQVYFACDKNEEIAANILF 399
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 182/427 (42%), Gaps = 81/427 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + + QGK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + S+ + A T + + + SQ A
Sbjct: 36 SYNIEEKGFVVCMVNKPKPTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAV--- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P P +D + S L GS + +
Sbjct: 93 -----------PATPTP---------------QRSADAGSEEPSGLAMGSQRTEAIANME 126
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R + A+RAA+NNP+RAVEYL +GIP+ R + P A
Sbjct: 127 AMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPDNI------RQEQQQREAAPAAHAA 177
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
A A G ++LF + G+NA G+ + A+
Sbjct: 178 QPSQPAAAAPQGGEEGGVNLFDLAAQHGGTNARGGS------GGNEAAAAAAAAAAGQGG 231
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
D+ + R QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E
Sbjct: 232 DLGNLDFLRHNAQFQQLRQIVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEY 291
Query: 361 VEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
+ +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELA
Sbjct: 292 ADDD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELA 342
Query: 418 ANYLLDH 424
AN+L D
Sbjct: 343 ANFLFDQ 349
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 30/216 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+IE + D V+D+K+ I+ QG V Q LI+ GKVL D ++E
Sbjct: 1 MKITVKTLQQKVFQIEAEGTDTVADLKQKIQETQGHGV---DSQKLIYSGKVLPDSKSIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ +A ++ S+APP + P S PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAA-----TAGASSSTPAASTAPPAAAAPAAESSIPAPV-- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS-SVSDVYGQAASNLVAGSNLEATVQQI 179
AP AAP P AP PA A APV+ S+ D + + G L+ TVQ +
Sbjct: 111 --------APSTAAPQPPNAPILTPAQA-APVAPSLGDGF-------LTGEALQGTVQNM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++MG ++RE V+RALRA++NNPERAVEYL++GIP
Sbjct: 155 IEMG---FEREQVMRALRASFNNPERAVEYLFNGIP 187
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + A+ + T + +TTS P P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTA---------AEEDHTNTETKEESSTTSSVPEPSSN 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV ++ P + A + A A GQA S L+ G N V I+
Sbjct: 109 P--SVQGASNPVSTAQEQSAASTATECAG----------GQAESALLMGENYNTMVNNIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLVTGIPAQ 190
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 30/151 (19%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-- 363
++ R+ QFQ +R ++Q NPQ+L MLQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMREVIQQNPQLLNAMLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 364 --------------------GEGNVLGQLASAM-------PQAVTVTPEEREAIERLEAM 396
G GN G +A A + +TP+++EAIERL+A+
Sbjct: 275 GTGGRTTPVSASTVAPTSAPGGGNS-GPVAGARRGGPFVETSIIEITPQDKEAIERLKAL 333
Query: 397 GFDRALVLEVFFACNKNEELAANYLLDHMHE 427
GF LV++ +FAC KNE LAAN+LL +H+
Sbjct: 334 GFPEHLVVQAYFACEKNENLAANFLLSQIHD 364
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKV-SSSGASTVSA 89
+NKV+E+ F+VVML+KSKV S+G S+ A
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQA 90
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 41/245 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
E + E F+VVM+TK K ++ ++ + + N+ ++TSSA +TQP++ P
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSA---TTQPSSN-----P 109
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
TV Q ++A + P PA GQA S L+ G + V
Sbjct: 110 TV---QETLQAASNVQEQSAVPTPAA----------------GQAESALLMGEDYNTMVN 150
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQA 232
I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+
Sbjct: 151 NIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQS 207
Query: 233 GNPPA 237
+P A
Sbjct: 208 QDPLA 212
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 84/146 (57%), Gaps = 29/146 (19%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--- 362
++ R+ QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE
Sbjct: 212 AFLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPAT 271
Query: 363 GGEGNVL--------------------------GQLASAMPQAVTVTPEEREAIERLEAM 396
G VL G A + +TP++R+AIERL+A+
Sbjct: 272 GAGARVLPTSGGGVASATAAAAAGGAVNGGAGTGAAAGVGSGTIQITPQDRDAIERLKAL 331
Query: 397 GFDRALVLEVFFACNKNEELAANYLL 422
GF LV++ +FAC KNE LAAN+LL
Sbjct: 332 GFPEHLVVQAYFACEKNENLAANFLL 357
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 120/242 (49%), Gaps = 34/242 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G PA QQ LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K S++ ++ ++ +T ST + +P PTV
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTS------DEQRTEGDNKEESTSSSVAQPSPNPTV- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +A A PA GQA S L+ G + V+ I+
Sbjct: 111 --QDTSRAASTVQEQIAAAVPAAG--------------CGQAESALLMGEDYNTMVKNIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQAGNP 235
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+ +P
Sbjct: 155 DMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP 211
Query: 236 PA 237
A
Sbjct: 212 LA 213
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 22/141 (15%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--- 362
++ R+ QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE
Sbjct: 213 AFLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPTA 272
Query: 363 GGEGNVL-------------------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 403
G VL A+ + +TP++R+AIERL+A+GF LV
Sbjct: 273 GAGARVLPAGGVASAAASGGLTGSAGTGAAAGAGGLIQITPQDRDAIERLKALGFPEHLV 332
Query: 404 LEVFFACNKNEELAANYLLDH 424
++ +FAC KNE LAAN+LL
Sbjct: 333 VQAYFACEKNENLAANFLLSQ 353
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 139/281 (49%), Gaps = 51/281 (18%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQT 218
G ++S+ V G L+A + +++MG ++ + V+RALRA+YNNP+RAV+YL SG IPE
Sbjct: 130 GLSSSSFVTGPALQAAISSMVEMG---FEHDQVVRALRASYNNPDRAVDYLMSGNIPEVE 186
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPT----------SGPNANPLDLFPQGLPNM 268
P A A A P AAP+ T SG + +LF +
Sbjct: 187 GPAPAATAPPTQTAPTIPTPA-----AAPSQTPAAPAAQPAPSGSAGSAENLFATVARDR 241
Query: 269 GSNAGAG--TLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQ 326
G++A A +L+ L NS Q Q LR MVQ NP
Sbjct: 242 GTSAPANVPSLEALGNSPQ----------------------------LQRLRQMVQQNPA 273
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
++ P+LQ++ NP L +LI +H + V GGEG L + +T +E
Sbjct: 274 LIGPLLQQVAAHNPALAQLINQHPEAVYEWLG--VGGGEGEDDDDLMGPQTMRIDLTQQE 331
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
EA++RLE +GFDR +VL+ + C+KNEELAANYL + E
Sbjct: 332 AEAVQRLEQLGFDRQVVLQAYLLCDKNEELAANYLFEQGEE 372
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ +KT++ F +E + + V DVK+ IE S +P QQ +I+ GK+L+D T++
Sbjct: 2 VKITLKTVQNKLFTVEAEEAETVGDVKRKIEE---SQTFPVEQQKIIYSGKILQDDTSIG 58
Query: 61 ENKVAENSFVVVMLTKSK 78
K+ E F+VVM++K K
Sbjct: 59 SLKIKEKDFLVVMVSKPK 76
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/458 (24%), Positives = 191/458 (41%), Gaps = 123/458 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
MK+ V+TL+ T EI V D + D+KK IE V+P +Q LI G +L
Sbjct: 1 MKIKVRTLQNTEEEINVDNNDTILDLKKKIEN-----VFPEMACDKQKLIFSGNIL---- 51
Query: 58 TLEENK----VAENSFVVVMLTKSKV------SSSGASTVSAAPA--NQAQTTSSAPPTS 105
++E+K + EN V+VM+T+ + S+ A+ ++++ + N+ + S
Sbjct: 52 -IDEDKAVDILKENDIVIVMVTRKIITNKKNNSTKNANELASSDSLKNKDEKNSDDKNND 110
Query: 106 -TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS 164
T+ T T ++ P+S+
Sbjct: 111 KTKNTDTENKGNENISNPESI--------------------------------------- 131
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
L+ G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G Q +
Sbjct: 132 -LLTGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGF--QDIIDDGH 185
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
S + P + + N N LD M N+ + LRNS
Sbjct: 186 DISEMKDSSENP--NDRDENYSNLSNLLMNYNLLD--ENERQEMSVNSES-----LRNS- 235
Query: 285 QVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMR 344
+F + +R +NPQ + +L+ +G+ +P L+
Sbjct: 236 ---------------------PFFNI------IRDAALSNPQRIPEILEMIGRSDPSLLE 268
Query: 345 LIQEHQTDFLRLINEPVEGGEGNVLGQL------ASAMPQA--------VTVTPEEREAI 390
I+E+Q +FL + + +G N L A Q ++ E E++
Sbjct: 269 YIRENQNEFLNAL-QNYDGDNNNAENDLIPNYEYADETNQNNDNFNIPITSLNESEMESV 327
Query: 391 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
+LE++GF + + LE F AC+KNEE+AANYL ++M+++
Sbjct: 328 RKLESLGFPKHVALEAFIACDKNEEMAANYLFENMNDY 365
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 142/291 (48%), Gaps = 67/291 (23%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 136 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 192
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA--NPLDLF-----------PQGLPNMGS 270
+A A PA A AP + P+ P++LF P G GS
Sbjct: 193 QQAQARAPTSPTPAGNTG---ATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGS 249
Query: 271 NAG--------AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQ 322
G A +LDFLRN+ Q + R +VQ
Sbjct: 250 APGATGGGALNANSLDFLRNNPQFQQL----------------------------RQVVQ 281
Query: 323 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QA 379
PQ+L+P+LQ++G NP L ++I ++ FL+L+ E + + +P QA
Sbjct: 282 QQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAEDADED---------APLPPGAQA 332
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
++VT +EREAIERL +GF+R LV++ +FAC+KNEELAAN+L D + +D
Sbjct: 333 ISVTEDEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFDQPDDADD 383
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 28/214 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ PA + +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSASAPGNPAGEG-----------RPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P S+ ++ G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPT-----------VTTTQSTTTNTLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+ MG +++ VIRA+RA +NNP+RA EYL SG
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSG 187
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 86 GQ------AEASAVVQALSVPAAVQA------FPTSG 110
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 74/100 (74%), Gaps = 12/100 (12%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+
Sbjct: 5 STEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYT 64
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
G+P Q A ASA QA + PA QA PTSG
Sbjct: 65 GLPGQ------AEASAVVQALSVPAAVQA------FPTSG 92
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IET +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ + TTS+ + T + TP+P +AP P P P PA
Sbjct: 102 PMPSPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPAPTVAPKEEKPA 161
Query: 143 PAPAPAPAPVS-------------------SVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P AP +S S S+++ A S LV G + E V +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYL 210
++RE VI ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 132/232 (56%), Gaps = 16/232 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ ++ AP AQ + S TST ++ APT A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGS---TSTAAPPSNPPAAPTPA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE A + A A P SS + A+S LV G+ EA + +I+
Sbjct: 118 AVPIPPEEAKQEQS-------AEATEPQQPASSSGGNQGLDASSALVTGAEYEAMLTEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPVARASAG 229
MG ++RE V+ ALRA++NNP RAVEYL +GIP Q + PPV ++G
Sbjct: 171 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPVQPPTSG 219
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 218 GQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 195/465 (41%), Gaps = 102/465 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K A+T S P +++P+ Q+ A T
Sbjct: 60 GCKLKDGDQVIFMISKKK----------------AETRVSEPEPASEPSGGPQSEASTGL 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+ P A A P A V S ++ V GS TV++I+
Sbjct: 104 ------ETVTTPGVSA-----AVDPESTGAAVGS--------GASFVTGSARSQTVERIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAG-GQAGNPPA 237
+MG +DR V ALRAA+NNP+RAVEYL +GIPE Q + AR SA +G P
Sbjct: 145 EMG---YDRAQVEMALRAAFNNPDRAVEYLLTGIPEHLQNSSAFSARQSASVAASGVPET 201
Query: 238 QTQAQQPAA---------PAPTSGPNANPLDLFPQGLPNMGSN-----AGAGTLDFLRNS 283
AQ + + + + DLF Q N T ++S
Sbjct: 202 GATAQTGTETETGTGTGTASEVNDEHVHEDDLFAQAAAVGSENPTTGADATTTGTVSQDS 261
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
+ + F L+ LR ++ +P+ L P+L+ L ++ P L
Sbjct: 262 SPLQTIGLTFEDLV------------------QLRGVINGDPEALPPLLESLSERYPELR 303
Query: 344 RLIQEHQTDFLRLINEPVEG----------------------GEGNVLG----QLASAMP 377
I + F+ ++ + V G G+G+ A A
Sbjct: 304 EQIMSNPEMFISMLLQAVGGALPSEALDDASAYQADSEAIAEGDGSTASANQDTAADAQN 363
Query: 378 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ ++++ E+ IERL +GF+R LV++++ AC+KNEE+ AN L
Sbjct: 364 ELLSLSEEDLTTIERLCELGFERDLVIQIYVACDKNEEVTANMLF 408
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 40/217 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D + A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK KVS S ++ S A ++ +T S A
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGD-----------------A 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P++VP P P A V++ N + + LEAT+Q I+
Sbjct: 103 KPKTVP--------------PEEVVKPTTAETERVTE-----TPNTTSDAELEATIQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG +DR V +ALRA++NN ERAVEYL +GIPE+
Sbjct: 144 DMG---YDRPQVEQALRASFNNRERAVEYLITGIPEE 177
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 14/135 (10%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--- 362
++ R QFQ +R ++Q NP +L +LQ++G+ NP L+++I +HQ F+R++NEPV
Sbjct: 194 AFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA 253
Query: 363 ---GGEGNVLG----QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+ NV QL S + V+ +++EAIERL+A+GF +V++ +FAC KNE
Sbjct: 254 AGVASDENVADIQQPQLGSQ--NVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNEN 311
Query: 416 LAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 312 LAANFLLS--QNFDD 324
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 85/117 (72%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP +GG
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPGDGGL 274
Query: 366 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
G +G + + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 275 GAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 331
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 84/128 (65%), Gaps = 11/128 (8%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--- 362
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPANVTP 274
Query: 363 --------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
GG G +G + + VTP+++EAIERL+A+GF LV++ +FAC KNE
Sbjct: 275 PTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNE 334
Query: 415 ELAANYLL 422
LAAN+LL
Sbjct: 335 NLAANFLL 342
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 24/139 (17%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP GG
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP--GGR 272
Query: 366 GNVLGQLASAMPQA----------------------VTVTPEEREAIERLEAMGFDRALV 403
+ P A + VTP+++EAIERL+A+GF LV
Sbjct: 273 TTPVSAANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLV 332
Query: 404 LEVFFACNKNEELAANYLL 422
++ +FAC KNE LAAN+LL
Sbjct: 333 VQAYFACEKNENLAANFLL 351
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 27/144 (18%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-- 363
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 364 ---------GEGNV----------------LGQLASAMPQAVTVTPEEREAIERLEAMGF 398
NV +G + + VTP+++EAIERL+A+GF
Sbjct: 275 GTGGRTTPVSAANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGF 334
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 335 PEHLVVQAYFACEKNENLAANFLL 358
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 135/283 (47%), Gaps = 66/283 (23%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPP------V 223
E + I +M ++R + A+RAAYNNPERAVEYL +GIP +Q A
Sbjct: 177 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAP 236
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--------- 274
A A A A P A AQ + A G + P++LF +G++AG
Sbjct: 237 AAAPAAAPAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGA 295
Query: 275 -------GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQI 327
G LDFLRN+ Q FQ +R +VQ PQ+
Sbjct: 296 GAEAAGLGNLDFLRNNAQ----------------------------FQQMRQLVQEQPQM 327
Query: 328 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 387
L+P+LQ+LG NP L ++I ++ FL N+LG+ + VT EER
Sbjct: 328 LEPILQQLGAGNPQLAQMIAQNSDQFL------------NLLGEGGEGGSVGIAVTEEER 375
Query: 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+AIERL +GF + ++ +FAC+K+EELAAN+L D E +D
Sbjct: 376 DAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPEEDD 418
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + ++ VK I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
K+ E FVV ++ K K ++
Sbjct: 58 SYKIEEKGFVVCVVNKPKTTA 78
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 124/440 (28%), Positives = 195/440 (44%), Gaps = 72/440 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K + ++ + V D K + + + SQ LI+ GKVL+D TLE
Sbjct: 2 INITFKDFKKEKIPLALESTNTVLDAKTQLAQNKSCE---ESQIKLIYSGKVLQDAKTLE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + V+ M++K K +++ + ++ A TT++ T+T +
Sbjct: 59 DCGLKDGDQVIFMISKKKSTTTKVTEAPSSTTATAPTTTTNSATNTPAEVS--------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PAA + PA PA A +S + ++ V GS + TV++I+
Sbjct: 110 -----------PAAASETPAQLPATTEAAPATTSSGETSSAGSAGFVVGSQRDQTVERIM 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V ALRAA+NNP+RAVEYL GIPE ARA+A Q P+ TQ
Sbjct: 159 EMG---YEREQVESALRAAFNNPDRAVEYLLMGIPENLQ----ARAAA-PQETAAPSITQ 210
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ P DLF Q GSN G T + + LL
Sbjct: 211 DVTTTTASTEDAPAEE--DLFAQAA--QGSNTGPNTEGESEHHGPPGSIGLTVQDLL--- 263
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+LR ++ NP+ L +L+ L + P+L + + F+ ++ E
Sbjct: 264 ---------------SLRQVISGNPEALTSLLESLSVRYPNLREQMMNNPQAFISMLLEA 308
Query: 361 VEGG------------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 402
V G+ A +P V +TPE+ +AI RL +GF+R+L
Sbjct: 309 VGDNLQGLEGLEGLGEEGHIEEGELEEGEEAHPIPH-VELTPEDEQAISRLCELGFERSL 367
Query: 403 VLEVFFACNKNEELAANYLL 422
V++V+FAC KNEE+AAN L
Sbjct: 368 VIQVYFACEKNEEVAANMLF 387
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 131/280 (46%), Gaps = 51/280 (18%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ----TAVP 221
V GS + TVQ+I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEHLQQTQQPQ 191
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
+ Q P ++ + P A+ DLF Q + G G D R
Sbjct: 192 QQQQQQQQQQQQPEPQAQESHETQQPQEHEEQQASSDDLFAQAAASAGGEEGG---DSAR 248
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
+ + LL +LR +V NP+ L P+L+ L + P
Sbjct: 249 APGTIGLT---MEDLL------------------SLRQVVTGNPEALPPLLESLSTRYPE 287
Query: 342 LMRLIQEHQTDFLRLINEPVEGG--EGNVLG-----------------QLASAMPQAVTV 382
L I + F+ ++ E V G EG + G + A PQ + +
Sbjct: 288 LREQIMTNPEMFISMLLEAVGGSLPEGIMEGDAGMEAGAEGALAGADVEGAEQAPQ-LEI 346
Query: 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+P+++EAI RL +GF+R LV++V+FAC+KNEE+AAN L
Sbjct: 347 SPQDQEAISRLCELGFERTLVVQVYFACDKNEEIAANMLF 386
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 161/360 (44%), Gaps = 84/360 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
Q+ AP + AG L+FLR+
Sbjct: 214 QESQAPE------------------QPATEAGENPLEFLRDQP----------------- 238
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM------RLIQEHQTDFLR 355
QFQ +R ++Q NP +L +LQ+LG++NP L+ R +++ + FLR
Sbjct: 239 -----------QFQNMRQVIQQNPALLPALLQQLGQENPQLLQVRPRVRELRQPPSQFLR 287
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 109/215 (50%), Gaps = 37/215 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D Y A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S + AS+ S A + S+ S +T +TP P
Sbjct: 60 TYNIDEKKFIVIMVTKPKPSETQASSTSTPEAGEC-AASTVVGDSKDKSTAEETPQP--- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PE PAAP + A + E+TVQ I+
Sbjct: 116 PTAAEPERTAEPAAPV-----------------------------ISAELDFESTVQSIM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 147 DMG---YNRQQVEQALRASFSNRERAVEYLITGIP 178
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 17/136 (12%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---- 361
S+ R QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 197 SFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPPA 256
Query: 362 ------EGGEGNVLGQLASAMPQAVT-VTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
+ G N + Q PQ+V V+P++REAIERL+A+GF +V++ +FAC KNE
Sbjct: 257 TGAVIQDSGVDNPIPQ----QPQSVVQVSPQDREAIERLKALGFPEHMVVQAYFACEKNE 312
Query: 415 ELAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 313 NLAANFLLS--QNFDD 326
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 176/396 (44%), Gaps = 60/396 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+ PP A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGM------PPEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLL 297
+TQ P + D P G
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLG--------------------------------- 252
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
R F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++
Sbjct: 253 ---------ALRHHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEML 303
Query: 358 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
GE G A P + +T EE EA++R+
Sbjct: 304 QSDQGEGETGAAGTGGFAAPGIIQMTAEEMEALQRV 339
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 127/271 (46%), Gaps = 54/271 (19%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQN 339
LRN+ Q FQ +R +VQ PQ+L+P+LQ+LG N
Sbjct: 268 LRNNAQ----------------------------FQQMRQLVQEQPQMLEPILQQLGAGN 299
Query: 340 PHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFD 399
P L ++I ++ FL N+LG+ + VT EER+AIERL +GF
Sbjct: 300 PQLAQMIAQNSDQFL------------NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFP 347
Query: 400 RALVLEVFFACNKNEELAANYLLDHMHEFED 430
+ ++ +FAC+K+EELAAN+L D E +D
Sbjct: 348 QDQAIQAYFACDKDEELAANFLFDQGPEEDD 378
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 129/274 (47%), Gaps = 60/274 (21%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA----------------GT 276
P A QA PAA N DL Q +G++AG G
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ----LGNSAGGRGARGAEGAGAEAAGLGN 264
Query: 277 LDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELG 336
LDFLRN+ Q FQ +R +VQ PQ+L+P+LQ+LG
Sbjct: 265 LDFLRNNAQ----------------------------FQQMRQLVQEQPQMLEPILQQLG 296
Query: 337 KQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM 396
NP L ++I ++ FL N+LG+ + VT EER+AIERL +
Sbjct: 297 AGNPQLAQMIAQNSDQFL------------NLLGEGGEGGSVGIAVTEEERDAIERLTRL 344
Query: 397 GFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
GF + ++ +FAC+K+EELAAN+L D E +D
Sbjct: 345 GFPQDQAIQAYFACDKDEELAANFLFDQGPEEDD 378
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 85/135 (62%), Gaps = 15/135 (11%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---- 361
++ R QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 125 AFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPPA 184
Query: 362 ------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415
+ G N + Q P V V+P++REAIERL+A+GF +V++ +FAC KNE
Sbjct: 185 PGAAVEDSGAENPMPQ---PPPSVVQVSPQDREAIERLKALGFPEHMVIQAYFACEKNEN 241
Query: 416 LAANYLLDHMHEFED 430
LAAN+LL F+D
Sbjct: 242 LAANFLLS--QNFDD 254
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 37/143 (25%)
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPP 132
M+TK K S + AS+ S A + S+ S + ++ +TP P A + PE P
Sbjct: 1 MVTKPKPSETQASSTSTPEAGEC-AASTVVGDSKEKSSAEETPKPPTA---AEPERTSEP 56
Query: 133 AAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 192
AP + A + E+TVQ I+DMG ++R+ V
Sbjct: 57 VAP------------------------------VSAELDFESTVQSIMDMG---YNRQQV 83
Query: 193 IRALRAAYNNPERAVEYLYSGIP 215
+ALRA+++N ERAVEYL +GIP
Sbjct: 84 EQALRASFSNRERAVEYLITGIP 106
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 22/216 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V D+K+ I+ QG + Q LI+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG---HALESQKLIYSGKVLPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTV-SAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
++ E F+V+M++K K + S A V S AP A ++AP Q T+++ AP
Sbjct: 58 SCEIKEKDFLVLMVSKPKPAPSNAPPVTSGAPVAAAPPAAAAPAPVPQATSSATALAPAP 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A PQ PA AP AP PA + + G L++TV +
Sbjct: 118 AAPQPPNAPILTPAQAAPIEGAAPVPA---------------GDGSFLTGEALQSTVNNM 162
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++MG ++RE V+RALRA++NNPERAVEYL++GIP
Sbjct: 163 IEMG---FEREQVMRALRASFNNPERAVEYLFNGIP 195
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q Q LR ++Q NPQ+ QP++QEL QNP L +++ ++ +L++ + GEG+ G +
Sbjct: 279 QIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGAL-AGEGDEGGDI 337
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
Q V VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 338 PPGA-QVVHVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 387
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAEXALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 27/144 (18%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 366 GNVLGQL---------------------------ASAMPQAVTVTPEEREAIERLEAMGF 398
G + + VTP+++EAIERL+A+GF
Sbjct: 275 GTGGRTTPVSASTVTPATAPGGISGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGF 334
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 335 PEHLVVQAYFACEKNENLAANFLL 358
>gi|242079217|ref|XP_002444377.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
gi|241940727|gb|EES13872.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
Length = 137
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 336 GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLE 394
G+QN + +LIQE+Q +FLR+IN+P E ++ Q A M + + V PEE EAI+RLE
Sbjct: 45 GEQNLQITQLIQENQAEFLRVINDPAGRAEESLPDQFGGAGMHRTIAVKPEENEAIQRLE 104
Query: 395 AMGFDRALVLEVFFACNKNEELAANYLLDHM 425
M FDR LVLEVFFACNK+E LAANYLLDHM
Sbjct: 105 QMTFDRDLVLEVFFACNKDEHLAANYLLDHM 135
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IE +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 27/144 (18%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 366 GNVLGQL---------------------------ASAMPQAVTVTPEEREAIERLEAMGF 398
G + + VTP+++EAIERL+A+GF
Sbjct: 275 GTGGRTTPVSASTVTPATAPGGISGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGF 334
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 335 PEHLVVQAYFACEKNENLAANFLL 358
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 82/116 (70%), Gaps = 7/116 (6%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN----- 367
QF +R ++++NP +L +LQ LG+ NP L++ I +HQ +F+ ++NEPVEG G
Sbjct: 193 QFNNMRQLIRSNPTLLSALLQNLGQSNPQLLQHINDHQQEFIEMLNEPVEGEGGAAGSGP 252
Query: 368 -VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
V+ QL + + VTP+E+EAIERL+A+GFD LV++ +FAC+KNE LAAN+LL
Sbjct: 253 PVMEQLPTGQ-NVIPVTPQEKEAIERLKALGFDEGLVIQAYFACDKNENLAANFLL 307
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V KTL+ F+IE++ V +K+ +E +G + +PA+ LI+ GK+L+D L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM+TK
Sbjct: 61 QYKIDEKNFVVVMVTK 76
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
V G+ E V ++ MG ++R+ V+ ALRA++NNP+RAVEYL +G+P
Sbjct: 133 VTGTAYETMVTSMMSMG---FERDQVVAALRASFNNPDRAVEYLLTGLP 178
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 134/290 (46%), Gaps = 104/290 (35%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+A + V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL
Sbjct: 54 SAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL---------- 100
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
T++Q PA +G N L+FLR
Sbjct: 101 -----------------TESQVSEQPATEAGDN---------------------PLEFLR 122
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPH 341
+ Q FQ +R ++Q NP +L +LQ+LG++NP
Sbjct: 123 DQPQ----------------------------FQNMRQVIQQNPALLPALLQQLGQENPQ 154
Query: 342 LMRLIQEHQTDFLRLINEP-----------VEGGEGNVLGQLASAMPQAVTVTPEEREAI 390
L++ I HQ F++++NEP VE GE +G+ A M + VTP+E+EAI
Sbjct: 155 LLQQISRHQEQFIQMLNEPPGELADISDVDVE-GEVGAIGEEAPQM-NYIQVTPQEKEAI 212
Query: 391 ER----------LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
ER L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 213 ERGRGPAGRAPSLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 260
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +G +T + TS +VA
Sbjct: 58 EYNIDEKKFIVVMVTKLK-TGNGHTTTEEEHTTNTDNKEESSTTS------------SVA 104
Query: 121 PPQSVP--ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S P + A P + A A V GQA S L+ G + V
Sbjct: 105 QPSSNPTVQGASNPTNTVQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNN 155
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 156 IVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 191
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 27/144 (18%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-- 363
++ R+ QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 216 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 275
Query: 364 ---------GEGNV----------------LGQLASAMPQAVTVTPEEREAIERLEAMGF 398
NV +G + + VTP+++EAIERL+A+GF
Sbjct: 276 GTGGRTTPVSAANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGF 335
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 336 PEHLVVQAYFACEKNENLAANFLL 359
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 107/215 (49%), Gaps = 40/215 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ P++ V +K IE +G D Y A Q LI+ GK+L D L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S NQ +++SAP +T S V
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSD-----------NQQASSTSAPEAGESASTESGDGKSKVV 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P P PA P A P PV+S + E+TVQ I+
Sbjct: 109 EEK-----------PKPQPAAEPERASEP-PVTS-------------NEPDFESTVQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
DMG ++R+ V +ALRA++NN ERAVEYL +GIP
Sbjct: 144 DMG---YNRQQVEQALRASFNNRERAVEYLITGIP 175
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 85/131 (64%), Gaps = 9/131 (6%)
Query: 307 YFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 366
+ R QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 195 FLRDQPQFQQMRAVIQQNPNLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPSAA 254
Query: 367 NVLGQLA---SAMPQ----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
+ + A + +PQ + V+P+++EAIERL+A+GF +V++ +FAC KNE LAAN
Sbjct: 255 GAVAEEAVPDNPVPQQPQNVIQVSPQDKEAIERLKALGFPEHMVIQAYFACEKNENLAAN 314
Query: 420 YLLDHMHEFED 430
+LL F+D
Sbjct: 315 FLLS--QNFDD 323
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 151/362 (41%), Gaps = 107/362 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI + V+DVK IE + A LIH GKVLKD ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+VVM+TK+K P + +P T TP P
Sbjct: 59 SAGIKENDFLVVMVTKAK-----------------------KPVAAKPAATP-TPVPAAT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PP AA A PAP A PA + DV +A +NL + EA V+
Sbjct: 95 P-------GPPVAAAASIETPAPTAAATPAAPTRADDVSAEAVANLTSMGFPEAEVK--- 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
LRAA+ NP+ AVE+L +GIPE VA A+A A N A T
Sbjct: 145 -------------HCLRAAHGNPDIAVEFLTNGIPE-----GVAEAAA---AMNTSAVTS 183
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+ + SG L LRN Q
Sbjct: 184 PSASSESSSGSGQ----------------------PLQALRNHPQ--------------- 206
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
++ R L Q +NPQ+LQ +L ++G+Q P L++ I +Q FL+++NEP
Sbjct: 207 ----FNDLRRLVQ---------SNPQMLQQVLTQIGQQQPQLLQEINANQALFLQIMNEP 253
Query: 361 VE 362
VE
Sbjct: 254 VE 255
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 378 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
Q + +T EE A++RL MGFDR+ + F AC+KNE LAAN L+D M
Sbjct: 357 QVLRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSM 404
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 128/279 (45%), Gaps = 68/279 (24%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L GS + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 104 SGLAMGSERAEAIANMEAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESIQQEQQ 160
Query: 224 AR------------ASAGGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 270
+ A G G+ AQ+ APA P A QG
Sbjct: 161 QQRANPPQAAPAAAAPTGDDDGSVNLFDLAAQRRGAPASGGSPAAATAAAAAQG------ 214
Query: 271 NAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQP 330
G LDFLR++ Q + R +VQ PQ+L+P
Sbjct: 215 --DLGNLDFLRHNAQFQQL----------------------------RQVVQQQPQMLEP 244
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP-----QAVTVTPE 385
+LQ+LG NP L +LI + FL+L+ E + +P QA++VT E
Sbjct: 245 ILQQLGAGNPQLAQLIASNPDQFLQLLGEDAD-----------DDVPLPPGAQAISVTEE 293
Query: 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
ER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 294 ERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 332
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 8/118 (6%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GG 364
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 58 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGGQGGGGS 117
Query: 365 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 118 GSGGVAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 175
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 100/212 (47%), Gaps = 43/212 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG +F+++V P + V +VKK IE QG ++P +QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV EN F VVML+K+ ++ + N + Q + +
Sbjct: 61 DNKVLENEFFVVMLSKT------SNILKQGLCNLSMRAFFCVKYLNQHSGIGKG------ 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A ++ A + + D+ G
Sbjct: 109 -------TAHFQSSRNVCCFNLVAGINLESKAQEILDIGG-------------------- 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
G +D TV+ ALRAA NN ERA+EYL S
Sbjct: 142 --GSWDFD--TVVHALRAASNNVERALEYLSS 169
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 106/428 (24%), Positives = 166/428 (38%), Gaps = 133/428 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-YPASQQMLIHQGKVLKDVTTL 59
MK+ ++TL +E+K +DK + + V+ ++ P LI+ G++++D +
Sbjct: 1 MKLTIRTLDQKTISLELK-DDKQNVLHLKQRLVELPEISQPVDSLQLIYSGRIMQDDRPI 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E+ F+V+M KS + PP T Q
Sbjct: 60 SEYNIMEDRFIVLMTKKS-------------------VNAVEPPKKN--TEAEQK----- 93
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
ES P + PA P P+ AP Q++
Sbjct: 94 -------ESQQPKSGNTEQLRPAEPPRPSVAPDE-----------------------QRV 123
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
D+ +D V ALRA++N+PERA+EYL +GIP T VP V + QT
Sbjct: 124 RDLVLMGYDEPDVRAALRASFNHPERAIEYLITGIP--THVPAVNQT-----------QT 170
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFI 299
Q AA A G A L
Sbjct: 171 QTNANAADANLIGETAERL----------------------------------------- 189
Query: 300 CDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
+Y F +R +++ NP++L+ +L L + +P I+ +Q +F+ ++N
Sbjct: 190 ------NYLATDPHFAHVRDLIRQNPELLELVLTHLRESDPAAFEAIRNNQEEFISMLNA 243
Query: 360 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
P MP ++ EE A+ERL A+GFDR +V+ V+ AC+KNEELAA+
Sbjct: 244 P---------------MPMTASLNTEEEAAVERLMALGFDRDVVVPVYLACDKNEELAAD 288
Query: 420 YLLDHMHE 427
L E
Sbjct: 289 ILFRQTDE 296
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 10/127 (7%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQ 371
F LR++VQ NP +LQP LQ+LG NP L+ LI+ +Q F+ + E + GEG +L Q
Sbjct: 277 FGQLRSLVQQNPALLQPFLQQLGASNPELLSLIERNQQAFVEYLQEGLGEGEGLDALLDQ 336
Query: 372 LASAMP--------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
Q + VT EER AI+RL AMGFD + ++ + AC++NEELAAN LL+
Sbjct: 337 FGDDGDDEGGMGGGQYIQVTEEERAAIQRLVAMGFDEQMAIQAYIACDRNEELAANMLLE 396
Query: 424 HMHEFED 430
+ +F+D
Sbjct: 397 NGFDFDD 403
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 23/214 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ KTL+ F IE +P + V+D+KK I+ QG +PA Q +I GK+L D T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E E F VVM+ K K + + A+ SAAP+ A + + + + P
Sbjct: 59 EANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S +A PAPA A PA A++ ++GS LE ++ +++
Sbjct: 119 AAPSSAPAATEAETPAPA-------ANQPA----------DEATSFISGSALETSISEMV 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + RE V RA+RA++NNP RAVEYL +GI
Sbjct: 162 AMG---FPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 104 bits (259), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V ++ VS VK+ IE QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKVAEN F+VVMLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++ F TLKGTHF ++V P D V+DVK NIE QG DVYP +Q+MLIHQGKVLKD TTLE
Sbjct: 45 LRGFEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLE 103
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E++ VV+ML+K
Sbjct: 104 ENKVVEDNSVVIMLSK 119
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQ 371
FQ LR ++Q++PQ+LQ +L+ +G+ +P L++ I EHQ +F+ ++N + + G
Sbjct: 199 FQQLRQVIQSDPQVLQRLLENIGETDPELLQKIIEHQDEFMEMLNSSDDMNGFPS----- 253
Query: 372 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
A P V +T E +++ERLE +GF RA V+E F AC+KNEELAANYLL++ ++F
Sbjct: 254 -ADDGPNFVHLTEAEIQSVERLEGLGFSRAAVIEAFLACDKNEELAANYLLENANDF 309
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 113/214 (52%), Gaps = 21/214 (9%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK--V 79
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 62
Query: 80 SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAP 139
+ + +T + PA TSS P Q + AP P P S + PAPA
Sbjct: 63 TPAPTTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPAS 122
Query: 140 A---PAPAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDMG 183
A PA PA PV++ S+++ A S LV G + E V +I+ MG
Sbjct: 123 ATKQEKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 182
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
++RE VI ALRA++NNP+RAVEYL I +
Sbjct: 183 ---YEREQVIAALRASFNNPDRAVEYLLMQISQH 213
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 341 HLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIE 391
+L+ I +HQ F++++NEPV+ G + + S + VTP+E+EAIE
Sbjct: 205 YLLMQISQHQEHFIQMLNEPVQEAGGQGGGGGSGSGGIAEAGSGHMNYIQVTPQEKEAIE 264
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLL 422
RL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 265 RLKALGFPEGLVIQAYFACEKNENLAANFLL 295
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 7/128 (5%)
Query: 307 YFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-----V 361
+ R L QF+ LR +VQ+NP IL ++Q++ + NP LMR IQ +Q F+ L+N P
Sbjct: 204 FLRQLPQFEQLRELVQSNPAILPQIIQQIAQSNPALMRAIQSNQEQFVNLLNAPSTEGGG 263
Query: 362 EGGEGNVLGQLASAMPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
+GG A A P+ A+ VT ER+AI RL+AMGF LV+E +FAC+KNE+LA N
Sbjct: 264 QGGAAPGGAPQAHAQPRGIAIEVTAAERDAINRLKAMGFPEQLVIEAYFACDKNEDLAVN 323
Query: 420 YLLDHMHE 427
Y+L M E
Sbjct: 324 YILARMDE 331
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KT+ F +EV P + ++K I +G YP Q LI+ GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ F+VVM+ + K A+ + PA A +A ST+ T
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPATPAVEEGAASVPSTEAVT---------- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A + A A P E TVQ I+
Sbjct: 111 -------AAPTGTAQPAPQQASAAAPDALTP-------------------EQEETVQAIV 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG + R+ VIRALRAA+ N +RAVEYL + IP++
Sbjct: 145 AMG---YPRDRVIRALRAAFFNGDRAVEYLCTEIPDE 178
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 350 DNEVSEDGFLVVMLSKIWISN 370
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 28/145 (19%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
++ RL QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE
Sbjct: 226 AFLRLQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPAA 285
Query: 366 GNVLGQLASAMPQA----------------------------VTVTPEEREAIERLEAMG 397
G L ++ + +TP++R+AIERL+A+G
Sbjct: 286 GTGARVLPASGGGVAPATAAAVGGAVNGGAGTGAAAGVGSGLIQITPQDRDAIERLKALG 345
Query: 398 FDRALVLEVFFACNKNEELAANYLL 422
F LV++ +FAC KNE LAAN+LL
Sbjct: 346 FPEHLVVQAYFACEKNENLAANFLL 370
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 40/242 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ V+ G F IE+ V D+K+ IE +G +PA Q LI+ GK+L D L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVS--AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM+TK K ++ ++ A + ++TSSA +TQP++ T
Sbjct: 75 NIDEKKFIVVMVTKPKAGATPKTSEEQRAEGDKKEESTSSA---TTQPSSNLNIQDTT-- 129
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A + ++ + GQA S L+ G + V I+
Sbjct: 130 ----------------------RAASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNIM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQAGNP 235
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+ +P
Sbjct: 168 DMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQSQDP 224
Query: 236 PA 237
A
Sbjct: 225 LA 226
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 332 DNEVSEDGFLVVMLSKIWISN 352
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 631 DNEVSEDGFLVVMLSKIWISN 651
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 12/122 (9%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------VE 362
QFQ +R +VQANP++L ++Q++G N L+RLIQE++ FL +N P +E
Sbjct: 26 QFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPEGIE 85
Query: 363 GGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
E G + P+ + T+T EER AIERL+A+GF LV++ ++AC KNE+ AAN+
Sbjct: 86 SSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQAYYACEKNEDAAANF 145
Query: 421 LL 422
LL
Sbjct: 146 LL 147
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 99/197 (50%), Gaps = 66/197 (33%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
N+V+ + ATVQQ++DMG + + V ALRAA+NNPERAVEYL +GIPEQ A P
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAAP--- 198
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
AQT P+SG +A GS+ A +L+ LRN
Sbjct: 199 ------------AQT-------AVPSSGASA-------------GSDDVANSLEALRNHP 226
Query: 285 QVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMR 344
Q F ALR +VQ+NP L +LQ++G Q+P L+R
Sbjct: 227 Q----------------------------FDALRQLVQSNPAALPAVLQQIGAQSPELLR 258
Query: 345 LIQEHQTDFLRLINEPV 361
LI ++Q F++++NEP+
Sbjct: 259 LIHQNQDRFVQMLNEPI 275
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
+ ++ EE A++RL MGF+R V++ + AC+KNE LAAN+L+D F
Sbjct: 381 IMLSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDNF 429
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 27/144 (18%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
++ RL QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEP E
Sbjct: 211 AFLRLQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQETFVRMLNEPAEPTT 270
Query: 366 GNVLGQLASAMPQA---------------------------VTVTPEEREAIERLEAMGF 398
G L S + +TP++REAIERL+A+GF
Sbjct: 271 GTGARVLPSGGGVGPAAAATAGGAVNGGPGAGAATGVGSGLIQITPQDREAIERLKALGF 330
Query: 399 DRALVLEVFFACNKNEELAANYLL 422
LV++ +FAC KNE LAAN+LL
Sbjct: 331 PEHLVVQAYFACEKNENLAANFLL 354
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 114/242 (47%), Gaps = 36/242 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K T + P TS + T + +
Sbjct: 58 EYNIDEKKFIVVMVTKPK-------------------TGATPKTSEEQRTEGDKKEESTS 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S P A + A AP + ++ S L+ G + V I+
Sbjct: 99 SATTQPSSNPNVQDTTRAASNVQEQPVAAAPAAGQAE------SALLMGEDYNTMVNNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQAGNP 235
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+ +P
Sbjct: 153 DMG---YEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDPPEDPPEAQEQLQDQSQDP 209
Query: 236 PA 237
A
Sbjct: 210 LA 211
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 33/238 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ D VS K+ + + D P SQ L++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K + + A S A A + S+ T +P ++ PTV
Sbjct: 58 ECKLKEGASIIFMISKAKETPTPAPVSSTPAAEAAASASTGDSTKVEPAGST----PTV- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PAAP A AP S S GS E T+Q I+
Sbjct: 113 -----------PAAPTSGAATNIEGESAPTETSE---------STFALGSERETTIQNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+MG ++R V ALRAA+NNP RAVEYL SGIPE P PVA A+ G +G P
Sbjct: 153 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRPSAPVASAATGSGSGAAP 207
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 19/128 (14%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG-- 370
Q Q LR +Q+NP+++QP+L++L NP + LIQ+ F+R G G LG
Sbjct: 276 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPETFIRTFL----GAGGEDLGFE 331
Query: 371 ----------QLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
A P+ + ++ +++ AI RL +GF+R LV++V+ AC+KNEE+A
Sbjct: 332 IEGEEGAVGEGGEGADPEGTVRIQLSEQDQNAINRLCELGFERDLVIQVYLACDKNEEVA 391
Query: 418 ANYLLDHM 425
A+ L M
Sbjct: 392 ADILFRDM 399
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 608 DNEVSEDGFLVVMLSKIWISN 628
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K K IEV+ D VS K + Q D +SQ L++ GKVL+D TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K T + P SS P +T+ T ++ T T
Sbjct: 58 ECKLKEGASIIFMISKAK------ETPTPVPG------SSVP--ATEATASASTGDSTKV 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P APAPA A A A SS + S GS E T+Q I+
Sbjct: 104 EP-----AGSTPTAPAPASETATNAEGATASTSSTGPAE-TSESTFALGSERETTIQNIM 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+MG ++R V ALRAA+NNP RAVEYL SGIPE P
Sbjct: 158 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRP 195
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 19/128 (14%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG-- 370
Q Q LR +Q+NP+++QP+L++L NP + LIQ+ F+R G G LG
Sbjct: 279 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPETFIRTFL----GAGGEDLGFE 334
Query: 371 ----------QLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
A P+ + ++ +++ AI RL +GF+R LV++V+ AC+KNEE+A
Sbjct: 335 IEGEEGVVGEGGEGADPEGTVRIQLSEQDQNAINRLCELGFERDLVIQVYLACDKNEEVA 394
Query: 418 ANYLLDHM 425
A+ L M
Sbjct: 395 ADILFRDM 402
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G + +P + Q LI+ GK+L D
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILND----- 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ A + LT + ++ A + PA T S P T+T P +T +P
Sbjct: 56 DTATAAPAPASPPLTYTPIARQNAPVLPTVPAPAVPT--SEPTTTTAPKEEEKTDSP--- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+ P + P+ + P+ ++ A S LV G + E V +I+
Sbjct: 111 -----PETMSPSSTECSVPSDSSRPS-----------LFVDATSALVTGQSYENMVTEIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE VI ALRA++NNP+RAVEYL GIP GQA P QT
Sbjct: 155 SMG---YEREQVIAALRASFNNPDRAVEYLLVGIP----------GDREGQAVADPPQTL 201
Query: 241 AQQPAAP 247
A P P
Sbjct: 202 ASTPTQP 208
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 237 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 285
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 137/287 (47%), Gaps = 57/287 (19%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+VSDVKK IE +G++ + AS Q LIH GKV++D TL++ KV + F+VVM
Sbjct: 136 QVSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAV------ 188
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTVAPPQ--SVPESAPPPAAPAPA 138
+ P+ + + P + +P + Q+ PA TVA Q +VP S P AA
Sbjct: 189 -------SKPSKEPTASVEKLPEAAKPVQSEQSIPANTVASVQETTVPRSDVPAAA---- 237
Query: 139 PAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRA 198
P S+ + S LV G+ E + +I+ MG ++R VIRA+RA
Sbjct: 238 -----------GPESATGE------SALVTGAEYERAISEIVGMG---FERSMVIRAMRA 277
Query: 199 AYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAG-NPPA--QTQAQQPAAPAPTSGPN 254
++NNP+RAVEYL SG IP V AGG+ + P + ++ P++ P S
Sbjct: 278 SFNNPDRAVEYLLSGNIPNAV----VREQPAGGRERVDTPGDEHSASESPSSEDPISALA 333
Query: 255 ANP--------LDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLF 293
+ P + P+ LP + GA + LR Q+ F F
Sbjct: 334 SLPQFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEF 380
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 15/116 (12%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------VE 362
QFQ +R +VQANP++L ++Q++G N L+RLIQE++ FL +N P +E
Sbjct: 337 QFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPEGIE 396
Query: 363 GGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEV---FFACNKN 413
E G + P+ + T+T EER AIERL+A+GF LV++V F N+N
Sbjct: 397 SSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQVNEGIFVLNRN 452
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +SDVK+ I +G +V SQQ LI+ GK+L+D T+E
Sbjct: 45 MKLTFKDLKQQKFVIEAEPSELISDVKEKITKEKGWEV---SQQKLIYSGKILQDANTVE 101
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M+TK K +++ AS S AP P+T + A +
Sbjct: 102 SYKIEEKGFIVCMITKPKPAAATASVASKAP----------------PSTPAAPVAASTP 145
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P A PA PA A A +SS G A S L G++ A + Q+
Sbjct: 146 APPPAPAQASAPAQAVPATPSPAGSGAAAAAISSTP---GGATSGLSMGTDRAAQIAQME 202
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R + A+RAA+ N ERA+EYL +GIPE
Sbjct: 203 NMG---FERTQIDAAMRAAFYNSERAIEYLINGIPE 235
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 190/461 (41%), Gaps = 164/461 (35%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ + LK F I+ +P + + +K+ I +G D A+QQ LI+ G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA 95
K+L++ T+E + E FVV M++K K
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------------- 100
Query: 96 QTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSS- 154
T AP T P+ PPA PAPA PA APAP ++
Sbjct: 101 --TQPAPSTPAGPSQ--------------------PPATPAPAQTSTPAAPSAPAPATND 138
Query: 155 -------VSDVYGQAA-----SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
S G AA S L+ GS EA VQ++ MG + R + RA+RAA+ +
Sbjct: 139 PSAPPATPSPAGGDAAAFNNPSTLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFH 195
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA-------PTSGPNA 255
P+RA+EYL +GIP+ T P AR +QP+APA P++ P A
Sbjct: 196 PDRAIEYLLNGIPD-TPEQPAAR----------------EQPSAPAQSNVPVPPSNQPAA 238
Query: 256 N-----PLDLFPQGLPNMGSNAGAGT------------------LDFLRNSQQVSMMFYL 292
N P++LF GT LDFLRN+
Sbjct: 239 NAEPDEPINLFEAAAQAAQGGGARGTRTAGASLGGAAGGEGLSNLDFLRNNPH------- 291
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
FQ LR +VQ P +L+P+LQ+LG NP L +LI ++Q
Sbjct: 292 ---------------------FQQLRQLVQQQPGMLEPILQQLGAGNPQLAQLIGQNQEQ 330
Query: 353 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
FL+L++E +E QL ++VT EER+AIER+
Sbjct: 331 FLQLLSEDIEDD-----TQLPPGT-HTISVTEEERDAIERV 365
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++ +P D V D+K I Q +P QQ +I+ GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT-TTSQTPAPTV 119
K+ E F+VVM++K K AAPA A T+ +A P +P +TS + P+
Sbjct: 58 ACKIKEKDFLVVMVSKPK----------AAPA--ATTSKTATPEPAKPVASTSSSAVPSE 105
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P A A A ++ + +G S G+ L+ V+ +
Sbjct: 106 P-------AVVPAPAEPVAAPAPVPAATEQPAAAAAAPAWGD-QSAFFTGAALQGAVENM 157
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++MG ++R V+RAL+AAYNNP+RAVEYL SGIP+
Sbjct: 158 MEMG---FERAQVMRALKAAYNNPDRAVEYLMSGIPD 191
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 197/476 (41%), Gaps = 90/476 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K + S + + + + T +A P ++S T
Sbjct: 60 ACKLKDGDQVIFMISKKKTGTL-MSPAATTTSTETKVTEAAAPGIRAVESSSDKAKKTAG 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +A +A A A A P S+ D V GS T+++I+
Sbjct: 119 APEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPD------HGFVTGSQRNETIERIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R V ALRAA+NNP+RAVEYL GIPE P S G A
Sbjct: 173 EMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAPQPAGS-----GVVAASQS 224
Query: 241 AQQPAAPAPT---------------SGPNANPLDLFPQ-GLPNMGSNAG------AGTLD 278
+A APT G +A+ +LF Q G AG GTL
Sbjct: 225 MDTSSAIAPTVESATAGVTTATTHTGGASAHEDNLFAQAAAAESGDTAGVTEASATGTLS 284
Query: 279 FLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ 338
S + + F L+ LR ++ +P+ L P+L+ L +
Sbjct: 285 --HGSSPLQTIGLTFEDLM------------------QLRGVINGDPEALPPLLESLSDR 324
Query: 339 NPHLMRLIQEHQTDFLRLINEPV-------------------EGGEGNVLGQ-------- 371
P + I + F+ ++ + V EG +GN
Sbjct: 325 YPEVREQIMGNPEMFISMLLQAVGGAIPSDSLDDAMSFRTEGEGEDGNTHANSEANPDGA 384
Query: 372 ---LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
++ A + +T ++ AI+RL +GFDR LV++V+ AC+KNE++ A+ L ++
Sbjct: 385 VVSVSEAAQDRLQLTSDDITAIDRLCELGFDRDLVVQVYVACDKNEDITADMLFNN 440
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 129/256 (50%), Gaps = 35/256 (13%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NP+RAVEYL +GIPE Q+
Sbjct: 144 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPDRAVEYLLNGIPEHLQ-----------QS 192
Query: 233 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFY 291
+ P Q A+ A N N DL Q G+ +G+G +
Sbjct: 193 ASAPRQAAQTAAASSAGADDDSNVNLFDLAAQAGRGSGARSGSGADVGTGAAAAAGQ--- 249
Query: 292 LFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351
D+ + R QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++
Sbjct: 250 ---------DLGNLEWLRANAQFQQLRQVVQQQPQMLEPILQQLGASNPQLAQLIAQNPD 300
Query: 352 DFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFF 408
FL L++E GG+ + + +P ++VT EER+AIERL +GF + ++ +F
Sbjct: 301 QFLSLLSES--GGDDD------APLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYF 352
Query: 409 ACNKNEELAANYLLDH 424
AC+KNEELAAN+L D
Sbjct: 353 ACDKNEELAANFLFDQ 368
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 53/210 (25%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +++ +A SNLV G++ +A V +++ MG ++RE V+ ALRA++NNP+RAVEYL +
Sbjct: 76 STNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAVEYLLT 132
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP-NMGSN 271
GIP G+ P A A P P SG ++ P+ LP N GS+
Sbjct: 133 GIP--------------GRDPGPAAGLDAVVP----PVSGVHSAPIGGI--SLPANTGSS 172
Query: 272 -AGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQP 330
+G L FLR+ QF +R ++Q N +L
Sbjct: 173 PSGGNPLSFLRSQP----------------------------QFHVMRQLIQQNAALLPA 204
Query: 331 MLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+LQE+G++NP L++ I HQ F++++NEP
Sbjct: 205 LLQEIGRENPELLQEISSHQEQFIQMLNEP 234
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 27/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P D ++ VK+ + +G D ASQQ LI+ GKVL D T+E
Sbjct: 1 MKLSFRDLKQQKFTIEAEPTDTIAQVKEKVAAEKGWD---ASQQKLIYSGKVLADANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M++K K ++S S A + T ++
Sbjct: 58 SYKIEEKGFIVCMISKPKAAASKPKEPSTPAATSSSTPAAPAAPPASAPAAPSE------ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ P PA + AP+ +D S + G+ E+T++++
Sbjct: 112 ----------QPSTPTPAQSATAAPSTDTTGAGGFND-----PSAFLMGNRNESTIREME 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG G R + RALRAAY NP+RA+EYL SGIPE
Sbjct: 157 SMGFG---RPEIERALRAAYFNPDRAIEYLLSGIPE 189
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 35/219 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + S ++ S+ A + + S
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPVTPS--------------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPA-PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP A A + PA P+PA + ++ +D S L+ G+ + + Q+
Sbjct: 103 --------APSRANAAASETPATPSPAGGASSGATFND-----PSALLMGNQGQEAITQM 149
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
L MG + R + RA+RAAY NP+RA+EYL +GIPE++
Sbjct: 150 LAMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPEES 185
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 95/190 (50%), Gaps = 39/190 (20%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
+K+ IE +G D YPA Q LI+ GK+L D T L E K+ E F+VVM+TK K+
Sbjct: 4 LKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKL------ 56
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
PA A ++ S P T QT T P
Sbjct: 57 ----PPATHAGSSDSTPTPGTGDGGEKQTSDTTSNEP----------------------- 89
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
PA V+S + +GQA S L+ G +++ I+DMG + +E V RALRA++NNP+R
Sbjct: 90 -PASENVNSGAS-FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDR 144
Query: 206 AVEYLYSGIP 215
AVEYL +GIP
Sbjct: 145 AVEYLLNGIP 154
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 181/435 (41%), Gaps = 100/435 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K++ G E EV P+ KV D+KK +E S+ P S + L + +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLE----SEYTPQSLR-LCYNNRVLEDPMTME 55
Query: 61 ENKVAENSFVVVMLTKSKV----SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
+ + E++ +V + K V S SG +APA P
Sbjct: 56 QLGIGEDTVIVYVGKKQSVQQLASKSGGCASPSAPAE-------------GPAKGELNEN 102
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P VA SVP P P+ A APA P+ PAPA + SV A
Sbjct: 103 PGVAGASSVPVDVPAPSPSAQAPATTQQPSGPAPASLRSVD----------------PAL 146
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQA 232
+ I+ MG DRE V ALRAAY N +RAVE+L +GIP +Q +ASA G+A
Sbjct: 147 IDSIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRA 204
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
P A G P + +G GT LR +
Sbjct: 205 AVPSA--------------------------GTPPSDAGSG-GTQSDLRRA--------- 228
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
+++ I D R+++Q NPQ + +L + P + L Q+ +
Sbjct: 229 LSAIPHIDD---------------FRSLLQNNPQAFSALAGQLLENFPQVGELAQQDPEE 273
Query: 353 FLRLI--NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG---FDRALVLEVF 407
F R + + + ++ + + A + E+R A+ RL +G + E +
Sbjct: 274 FARFMMAGSVPDNADQTLVTAGETEVDDAQPLGEEDRAAVNRLVLLGEGAWGEREATEAY 333
Query: 408 FACNKNEELAANYLL 422
C + E+ AA++LL
Sbjct: 334 RMCGRREDAAAHFLL 348
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 10/121 (8%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
QFQ LR ++ NP ++QP++Q+L NP +L+ ++ L + GEG+ G
Sbjct: 249 QFQQLRQVIAQNPALVQPLIQQLAGANPQFAQLLAQNPEALLTALGL----GEGDFEGD- 303
Query: 373 ASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
A+P + +TPEE+EAI+RLEA+GF R V+E +FAC+KNEELAANYL D FE
Sbjct: 304 EGALPPGTHVINITPEEQEAIQRLEALGFPRQAVIEAYFACDKNEELAANYLFD--SGFE 361
Query: 430 D 430
D
Sbjct: 362 D 362
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V+D+K+ I QG + Q +I+ GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQG---HAVESQKIIYSGKILPDTKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ A++ S + + P T P+ P
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P AP PA P AP PA A D Q+ N++
Sbjct: 118 QPPNAPLLAPAPATPVAAPQPAQERALGDLSSFVTGDALQQSIQNMI------------- 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG ++R+ V+RALRA++NNP+RAVEYL++GIP
Sbjct: 165 EMG---FERDQVMRALRASFNNPDRAVEYLFNGIP 196
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPE 385
I + L+E+ KQNP L ++I+ + F+ ++N+ E E N L Q + Q + VT
Sbjct: 74 ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNK--ESFERDNELAQPEEDLLQ-LQVTAV 130
Query: 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426
+ EAI RLEAMGF+R +VLEVF ACNKNE+LAAN+LLDH+H
Sbjct: 131 DDEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 29/222 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTLK F+IE+ E+ V +K+ I +G+D +P + Q LI+ GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ + F+V M+TK K S + +A T++ QPT P VA
Sbjct: 61 EYKIEDGKFIVAMVTKPK--SVSPPAPTPPEPTEAAVTTTTSTQEEQPTN-----QPAVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + +PA A + +P VS QA S LV G V I+
Sbjct: 114 ------------STTSSSPAEEQASSASPLNVS-------QAESTLVTGEAYNELVTSIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
MG ++RE V+ AL A++ NP+RAVEYL SG PP
Sbjct: 155 AMG---FERERVVAALNASFCNPDRAVEYLMSGTTNVGTAPP 193
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 20/124 (16%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-----------PV 361
+ Q + +Q NP +LQP LQ++ + NP L ++ H +F+ + P
Sbjct: 221 EIQVMAQQIQQNPHLLQPYLQQIEQSNPSLFNMVSSHPEEFVSFLTTLRRGTSQTQPPPA 280
Query: 362 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 421
G G V V VT E++ IE+L+++GF + ++ + AC+KN ++AAN+L
Sbjct: 281 SAGAGGV---------SYVRVTAGEQQDIEQLKSLGFSESECVQAYMACDKNLDMAANFL 331
Query: 422 LDHM 425
L +
Sbjct: 332 LSDI 335
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 24/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V+D+KK I+ QG + Q LI+ GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K V+ PA A T++S TS+ + PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPK-------NVTNLPA--ASTSTSIAATSSPAPVPAPAPAPQPV 108
Query: 121 PPQSVPESAPPPAAPAPAP---APAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
SAP PA P PA A P AP + +D +++ + G L++T+
Sbjct: 109 SEPPSVPSAPSPAPQPPNAPILTPAQAQPIAAPTTEQAFND-----SNSFLTGEALQSTI 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
Q +++MG ++R+ V+RALRA++NNP+RAVEYL++
Sbjct: 164 QNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 134/275 (48%), Gaps = 28/275 (10%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE----QTA 219
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP A
Sbjct: 146 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 202
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP----NANPLDLFPQGLPNMGSNAG-- 273
P A S A P +PAA S P + +LF M + G
Sbjct: 203 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPPASAGGSADNLFAAAEAAMNRDRGVP 262
Query: 274 -AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
A L + + + D Q A+R MVQ NP ++QP+L
Sbjct: 263 AAAGAPGLPGAPGLPGAGAGMPGGMGGGD-----------QLSAIRQMVQQNPAMIQPLL 311
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 392
Q++ ++P L +LI ++ L+ G+ + M V +T EE A+ER
Sbjct: 312 QQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVM--RVNLTQEEAAAVER 369
Query: 393 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
LEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 370 LEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 404
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 132/269 (49%), Gaps = 34/269 (12%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L GS E Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 139 SALTMGSAAEGAAAQMEAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDN-----I 190
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
+ + PA T A APA SG + +LF G G + +
Sbjct: 191 QEQQQQQRQASEPASTGA----APAAPSGGDEPHFNLFEAAAQAGGEGGGRSRG--VAGA 244
Query: 284 QQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLM 343
+ SL F+ R FQ LR +VQ P +L+P+LQ++ NP +
Sbjct: 245 GAGTAGGEALGSLEFL---------RSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIA 295
Query: 344 RLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDR 400
+I ++ FL+L+ L A+P QA++VT EER+AIERL +GF R
Sbjct: 296 SIIGQNSDQFLQLLG--------EELEDEEGALPPGAQAISVTEEERDAIERLCRLGFPR 347
Query: 401 ALVLEVFFACNKNEELAANYLLDHMHEFE 429
V++ +FAC+KNEELAAN+L D E E
Sbjct: 348 DSVIQAYFACDKNEELAANFLFDQPEEDE 376
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 134/275 (48%), Gaps = 28/275 (10%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE----QTA 219
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP A
Sbjct: 144 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 200
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP----NANPLDLFPQGLPNMGSNAG-- 273
P A S A P +PAA S P + +LF M + G
Sbjct: 201 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPPASAGGSADNLFAAAEAAMNRDRGVP 260
Query: 274 -AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPML 332
A L + + + D Q A+R MVQ NP ++QP+L
Sbjct: 261 AAAGAPGLPGAPGLPGAGAGMPGGMGGGD-----------QLSAIRQMVQQNPAMIQPLL 309
Query: 333 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 392
Q++ ++P L +LI ++ L+ G+ + M V +T EE A+ER
Sbjct: 310 QQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVM--RVNLTQEEAAAVER 367
Query: 393 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
LEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 368 LEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 402
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 124/270 (45%), Gaps = 79/270 (29%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARAS 227
E V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S
Sbjct: 312 EQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSS 368
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
G++ + +A + AA TSG +PLD+ LRN
Sbjct: 369 GAGRS----SAVEADEGAA---TSGSGGHPLDV-------------------LRN----- 397
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
L +F+ LR ++Q P +L +LQ L Q+P L ++
Sbjct: 398 -----------------------LPEFEELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLR 434
Query: 348 EHQTDFLRLIN--------------EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393
++Q + ++ E V+ E + + VTP+E+ AIERL
Sbjct: 435 QYQEYLVHMLTTEEEEDGSEGGGGGEGVDNAE---TAETVREDDSYIEVTPQEQAAIERL 491
Query: 394 EAMGFDRALVLEVFFACNKNEELAANYLLD 423
+A+GF LV++ +FAC KNE LAA+ L D
Sbjct: 492 KALGFPEGLVIQAYFACEKNEILAASLLSD 521
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 133 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 192
Query: 73 MLTK 76
++ +
Sbjct: 193 LVAR 196
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 307 YFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 366
+ R QFQ LR +VQ NPQ+L+P+LQ++G NP L LI +H FL+L++E +G
Sbjct: 198 FLRNNAQFQQLRQVVQQNPQMLEPILQQVGAGNPQLAALIGQHPEQFLQLLSE-----DG 252
Query: 367 NVLGQL-ASAMPQAVTVTPEEREAIERLEA----MGFDRALVLEVFFACNKNEELAANYL 421
+ L A ++VT ER AIER+ + GF R ++ +FAC+KNEELAAN+L
Sbjct: 253 DNDAPLPPGAQATQISVTEPERAAIERVSSPDITFGFPRDQAIQAYFACDKNEELAANFL 312
Query: 422 LDH 424
D
Sbjct: 313 FDQ 315
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 149 PAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVE 208
P P + + +S L G+ A + ++ MG ++R + A+RAA+ N ERA+E
Sbjct: 55 PTPAGTGASAPSGNSSGLAMGAERAAQIAEMESMG---FERSQIDLAMRAAFFNSERAIE 111
Query: 209 YLYSGIPE 216
YL +GIPE
Sbjct: 112 YLLTGIPE 119
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++ GE G
Sbjct: 251 FNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSGQGTGEAGAPGTGF 310
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
A + +TP+E EA++RLEA+GF R +E + AC++NEE+AANYL +++++ D
Sbjct: 311 GA-GGIIQMTPDEMEALQRLEALGFSRHQAVEAYLACDRNEEMAANYLFENLNDLGD 366
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ ++TL E++V PE+ + ++K+ +E Q PA +Q L+H GK+L D ++
Sbjct: 1 MRLRIRTLSNEEAELDVGPEETIFNLKEKVE--QKWPHMPAVRQKLVHAGKILADSQKVK 58
Query: 61 EN-KVAENSFVVVMLTKS 77
E + EN +VVM+TK+
Sbjct: 59 ECPSLKENDRLVVMVTKA 76
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 27/136 (19%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRL---------------IQEHQTDFLRLIN 358
F+ +R +V++NPQ L +L +G+ +P L+++ I E+Q +F++L++
Sbjct: 199 FEQMRAIVRSNPQTLPQILSLIGQSDPSLLQVSLTIITYLIYYPYIAITENQEEFIQLLS 258
Query: 359 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER------LEAMGFDRALVLEVFFACNK 412
EPV G G+ + Q++T+TPEE E+I R LE +GF R +E F AC+K
Sbjct: 259 EPVLGTSGDFID------AQSITLTPEEMESINRVSDTIYLEGLGFSRPAAVEAFLACDK 312
Query: 413 NEELAANYLLDHMHEF 428
NEE+AANYLL+++ ++
Sbjct: 313 NEEMAANYLLENIADY 328
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 88/213 (41%), Gaps = 62/213 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTT 58
MK+ TLK +EV P D V + I GS + AS+ LIH GK+LK
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILKMEQK 56
Query: 59 LEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + + + + ++V+ +K Q++ ++ A PT PAP
Sbjct: 57 ISDYSDIKDGDKIIVLFSK-----------------QSEASTIANPT----------PAP 89
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T P A A P P P P + L+ G LE +
Sbjct: 90 T-----------STPIADANTSPPKPIPTTDP--------------NALLMGEELEKAIN 124
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
I++MG +D E+V A+ AA+NNP RA+E L
Sbjct: 125 GIVEMG---FDVESVKAAMSAAFNNPNRAIELL 154
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ +P + V+D+KK IE G +P + Q LI+ G+VL D T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+ V++ + + + A A T+++ + PA ++
Sbjct: 58 SCNIKEKGFL-VLMVAKPKAEPKPAAAATPAAAAAATSAAPSNPPAAAPAAAPAPATSIP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA A AP P S + + A V G++L+ VQ ++
Sbjct: 117 AAAPPQPPNAPILTPAQA-------APVSTPAQSARAINDENA--FVTGADLQTAVQNMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG ++RE +RALRA+YNNPERAVEYL++GIP
Sbjct: 168 EMG---FEREQAMRALRASYNNPERAVEYLFNGIP 199
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 9/114 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN---EPVEGGEGNVL 369
Q Q LR ++Q NP ++QP+L +L + NP L L +H + I + +EGG G++
Sbjct: 302 QIQHLRQLLQQNPALIQPVLHQLAQSNPELAELFTQHPEAIAQAIGLTPDDLEGG-GDI- 359
Query: 370 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
+ VT EE+ AI+RL+ +GF RA +E +FAC+K+E +AANYL D
Sbjct: 360 ----PEGAHVIHVTEEEQAAIQRLQDLGFSRAAAIEAYFACDKDEAMAANYLFD 409
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum CBS
127.97]
Length = 255
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 156 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGTQSISVT 206
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 207 EEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 253
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 280 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGAQSISVT 330
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 331 EEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 377
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 93.6 bits (231), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 281 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGAQSISVT 331
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 332 EEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 378
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 163/395 (41%), Gaps = 110/395 (27%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTK------------SKVSSSGAS-----------------TVSAAPANQAQTTSSAPP 103
++ + + +++G S + AAPA + SAP
Sbjct: 73 LVARPEAATTAAPATATATATAGQSHPATAALAGAGAPARGPALPAAPATSTR-AKSAPA 131
Query: 104 TSTQPTTTSQTPAPTVAPPQSVP------------ESAPPPAAPAPAPAPAPAPAPAPAP 151
TST+ + + + + + A PP AP+P P A A P+
Sbjct: 132 TSTRAKSAPASVSASSTASAQPAPAGAPASPQAAGQQAGPPGAPSPTPDDAIA---GPSS 188
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
+ S+ QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 189 RAQPSE---QAARALLTRPASEQMVAEIVSMG---YEREHVLAALRASFNNPHRAVEYLL 242
Query: 212 SGIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
G+P A PP A +S G++ A A A TSG +PL
Sbjct: 243 MGLPGDRASAAEVEPPQAGSSGAGRSSAVVAD-------AGATTSGSGGHPL-------- 287
Query: 267 NMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQ 326
DV W + +FQ LR ++Q P
Sbjct: 288 ----------------------------------DVLWNAP-----EFQLLRQILQYFPS 308
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361
+L +LQ + Q+P L R +++Q + ++ P+
Sbjct: 309 LLPGVLQRICPQDPLLRRQFRQYQDYLVHMLTAPM 343
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ++G NP L +LI ++Q FL+L++E ++ + +P Q+++VT
Sbjct: 278 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD---------ETQLPPGAQSISVT 328
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 329 EEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDEGED 375
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q Q LR +VQ+NP ++QP++Q+L QNP L + ++ ++ E G + G
Sbjct: 303 QIQQLRELVQSNPGLIQPLVQQLAAQNPELAQAFMQNPFALANILGVDDEEGLAGMEG-- 360
Query: 373 ASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
+P V VTPEER AIERLE +GF R +E +FAC+KNEELAANYL +
Sbjct: 361 GGDLPPGAHVVQVTPEERAAIERLEGLGFPRQAAIEAYFACDKNEELAANYLFE 414
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ G+ L ATVQ I++MG ++RE V RALRA+YNNPERAVEYL++GIP
Sbjct: 144 FLTGAALNATVQNIMEMG---FEREQVQRALRASYNNPERAVEYLFNGIP 190
>gi|326427438|gb|EGD73008.1| hypothetical protein PTSG_04717 [Salpingoeca sp. ATCC 50818]
Length = 127
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 18/121 (14%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
F LR +V NP L +LQ L NP L++LI ++Q DF LIN P
Sbjct: 18 FNQLRRLVHQNPAHLPSLLQHLASSNPDLVQLINDNQEDFYHLINAPS-----------V 66
Query: 374 SAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426
+AMPQ + ++PE+ EAIERL A GFDRA + +FAC+K+E AAN+L +H +
Sbjct: 67 AAMPQGPPPGAQGLQLSPEDAEAIERLVAFGFDRATAAQAYFACDKDENAAANWLFEHGN 126
Query: 427 E 427
E
Sbjct: 127 E 127
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q Q LR +V+ NP ++QP++Q+L QNP + + + + L+L+ EG E
Sbjct: 290 QIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLLGA-GEGDEEGGPEGE 348
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
Q ++VT EEREAI RLEA+GF R VLE +FAC+KNEELAANYL + F+D
Sbjct: 349 VPPGAQVISVTVEEREAIARLEALGFPRHAVLEAYFACDKNEELAANYLFE--GHFDD 404
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 18/95 (18%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 145 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP-------- 193
Query: 224 ARASAGGQAGNPPAQTQAQQ--PAAPAPTSGPNAN 256
A +A PP + Q PAAP S P +N
Sbjct: 194 --AHLEAEAAGPPRTSSTTQSNPAAP---SAPQSN 223
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 266 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGAQSISVT 316
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E E+
Sbjct: 317 EEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENEE 363
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 46/215 (21%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
+V +KTL+ F++ V+ D ++ +K+ IE QG + + Q LI GK+L D T+E
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAP 121
++ E F+VVM++K K QP T + A P
Sbjct: 60 LQIKEKDFLVVMVSKPK---------------------------PQPATPKKDEAKVEQP 92
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
Q +S P P PA + P+ Q +NL GS LE V +++
Sbjct: 93 AQ---KSEQPEQPEQPQQTQQPASSSTPS----------QPGNNLAMGSELETAVSNMVE 139
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG +DR V++A+RA++NNPERAVEYL +GIP+
Sbjct: 140 MG---FDRAQVMKAMRASFNNPERAVEYLMTGIPQ 171
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q L Q NP +LQ ++QE+ + NP L +L+ ++ L L++ EG EG+ Q
Sbjct: 225 QLAELVQAAQENPALLQSLIQEIAQSNPTLAQLLAQNPQALLDLLSG--EGAEGDF--QD 280
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
Q + +T E+ EA+ RLEA+GF R + + AC NEELAANYL + +
Sbjct: 281 EDGPGQVIHLTEEQAEAVARLEALGFSREMSAQALLACEGNEELAANYLFEQQEDL 336
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q Q LR +V+ NP ++QP++Q+L QNP + + + + L+L+ EG G+
Sbjct: 295 QIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLLGAGEGDEEGGPEGE- 353
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
Q ++VT EEREAI RLEA+GF R VLE +FAC+KNEELAANYL + F+D
Sbjct: 354 VPPGAQVISVTVEEREAIARLEALGFPRHAVLEAYFACDKNEELAANYLFE--GHFDD 409
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 147 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP 195
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 43/216 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV D V K+ + + + +V SQ ++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K +S + PA + TS+ +T+ T S TPA
Sbjct: 58 SFKIKEGDSIIFMISKAKKASP-----APGPAKAEEKTSTDASATTESTNASSTPAAASG 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ S P A G + EAT+Q I+
Sbjct: 113 ASTNQQGSEPGSA--------------------------------FAQGDDREATIQNIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R + ALRAA+NNP RAVEYL +GIPE
Sbjct: 141 EMG---YERPQIEEALRAAFNNPHRAVEYLLTGIPE 173
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 20/128 (15%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG-- 370
Q + LRT +Q NP+++QP+L++L NP + LIQ+ F+R G G+ +G
Sbjct: 251 QMRLLRTALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIRSF-----LGSGDDMGFD 305
Query: 371 -----------QLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
P+ V + T ++ AI RL +GFDR LV++V+ AC+KNEE+A
Sbjct: 306 FEEGEGEGVEGAGQGNEPETVRIALTEQDESAINRLCELGFDRNLVIQVYMACDKNEEVA 365
Query: 418 ANYLLDHM 425
A+ L M
Sbjct: 366 ADILFRDM 373
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGGEGNVL 369
Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ D L + +E +GGE
Sbjct: 224 QLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGGE---- 278
Query: 370 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL + E E
Sbjct: 279 -DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEIAEEDE 337
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 4/51 (7%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
V G+ L+ + +++MG ++R+ V++ALRA+YNNP+RAVEYL SG IPE
Sbjct: 89 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 136
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----------- 49
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 50 -GKVLKDVTTLEENKVAENSFVVVMLTK 76
GK+LKD T+ + K+ E F+VVM++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGGEGNVL 369
Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ D L + +E +GGE
Sbjct: 233 QLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGGE---- 287
Query: 370 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL + E E
Sbjct: 288 -DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEIAEEDE 346
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 4/51 (7%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
V G+ L+ + +++MG ++R+ V++ALRA+YNNP+RAVEYL SG IPE
Sbjct: 98 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 145
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTKSK 78
K+LKD T+ + K+ E F+VVM++K K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 12/106 (11%)
Query: 325 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVT 381
P +L+P+LQ++G+ NP L +LI +H FL L++E + + +P Q V+
Sbjct: 284 PHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSEDHDDD---------TPLPPGAQVVS 334
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
+T EE EAI+RL +GF+R LV++ +FAC+KNEELAAN+L D E
Sbjct: 335 ITEEESEAIDRLCRLGFERDLVVQAYFACDKNEELAANFLFDQPEE 380
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q Q LR + +PQ+ QP++Q+L QNP + +++ ++ +L+ G L +
Sbjct: 270 QIQQLRQQLADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQLL--------GVELDEE 321
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
V+VT EER+AIERLEA+GF R VLE +FAC+KNEELAANYL +
Sbjct: 322 VPPGAHVVSVTAEERDAIERLEALGFPRQAVLEAYFACDKNEELAANYLFE 372
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV+ D V K+ + + + ASQ L++ GKVL D TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-SSAPPTSTQPTTTSQTPAPTV 119
E K+ E ++ M++K+K S+ S+ P QA T P + +QP +
Sbjct: 58 EYKIKEGVSIIFMISKAK------SSQSSTPQPQAAATPEQKPASESQPKQETSQLGNAA 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + + A APA S GS EAT+Q I
Sbjct: 112 ATSAAAAAAPASDEAVTEAPA-----------------------STFAVGSEREATIQNI 148
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 149 MEMG---YDRPQVENALRAAFNNPHRAVEYLITGIPE 182
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI----------NEPVE 362
Q Q LRT +Q NP+++QP+L++L NP + LIQ+ F+R E
Sbjct: 255 QMQLLRTALQTNPELIQPLLEQLAATNPQIASLIQQDPEAFIRTFLGGGSDDFGFEIEGE 314
Query: 363 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
G + GQ + +T ++ AI RL +GF+R LV++V+ AC+KNEE+AA+ L
Sbjct: 315 GEDATQGGQEGQGETIRIALTEADQNAINRLCELGFERDLVIQVYLACDKNEEVAADILF 374
Query: 423 DHM 425
M
Sbjct: 375 RDM 377
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 164/410 (40%), Gaps = 95/410 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++ P QA+T SS PTS T+P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 111 TSQTPAPT-VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ AP + P+ E PPP+ AP+ A ++G +
Sbjct: 116 SGAGGAPGGITEPRQGAE--PPPSEEAPSQGLA---------------LHGVDPT----- 153
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
V I+ MG DRE V ALRAAY NP+RAVE+L T +P
Sbjct: 154 -----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLC------TGIPSDVLQRMN 200
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
A NP A ++ TS +R
Sbjct: 201 EPAINPSASSERMSSLTDRLTS---------------------------HMRQDD----- 228
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
D Y+ + QF +R++VQANP+ L ++Q+L +P ++ LIQ+
Sbjct: 229 ----------SDSALYNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQD 278
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV--TPEEREAIERLEAMG 397
FLR++ P + G P +V++ EER AI+RL +G
Sbjct: 279 LEGFLRIMGNPGQTEFTTSTGGGGDVPPDSVSIPLREEERVAIQRLVELG 328
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 67/255 (26%)
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+ +L + G +DRE I ALRAA+ NP+RAVE+L +G+P+ A
Sbjct: 131 ENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLPDDAA----------------- 173
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
P GP Q + N+ + G L+ L N Q++
Sbjct: 174 ---------DQEPDLGP--------EQNIDNVDED-GNDDLNMLANMPQLA--------- 206
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
+R ++Q NP++L +LQ+L NP L++ IQ +Q F+ L
Sbjct: 207 -------------------EIRALIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDL 247
Query: 357 INEPVEGGEGNVLGQLASAMPQ--AVTVTPEEREAIERLEAMGFD--RALVLEVFFACNK 412
+N +G P+ + ++PEE AIER++A+ + A+V+E +FAC+K
Sbjct: 248 LNGGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKAIVVNAPEAVVVEAYFACDK 307
Query: 413 NEELAANYLLDHMHE 427
NEE A N++ ++ E
Sbjct: 308 NEEAAINFIFSNLDE 322
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ + +++VK + + +G D P Q+ LI+ GK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSA 89
E + FVVVML+K KV+ S+ A
Sbjct: 62 EVGFDSSKFVVVMLSKRKVTEVAPSSTVA 90
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 11/101 (10%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI ++ FL L++E +G E + + +P QA++VT
Sbjct: 300 MLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--DGDEDD------APLPPGAQAISVT 351
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 352 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 392
>gi|224587227|gb|ACN58624.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 102
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%), Gaps = 10/104 (9%)
Query: 334 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQA-----VTVTPEE 386
+LG++NP L++ I ++Q F++++NEP G G+V +G L +A+ + + VTP+E
Sbjct: 1 QLGRENPQLLQQISQYQELFIQMLNEPA-GEVGDVPEVGDLGAAVEEGAPVNYIQVTPQE 59
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+ FED
Sbjct: 60 KEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQG--FED 101
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI + FL L+ E V+ +P QA++VT
Sbjct: 292 MLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDDD---------VPLPPGAQAISVT 342
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D + +D
Sbjct: 343 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQPEDDDD 389
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
+L+P+LQ+LG NP L +LI + FL L+ E E G QA++VT EE
Sbjct: 965 MLEPILQQLGAGNPQLAQLIASNPDAFLHLLGEDAEDDVPLPPGA------QAISVTEEE 1018
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
R+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 1019 RDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFD 1055
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 12/125 (9%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
+ R QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 132 DFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL----------- 180
Query: 366 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D
Sbjct: 181 -NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQG 239
Query: 426 HEFED 430
E +D
Sbjct: 240 PEEDD 244
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 12/107 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI + FL L+ E V+ +P QA++VT
Sbjct: 292 MLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDDD---------VPLPPGAQAISVT 342
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D + +D
Sbjct: 343 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQPEDDDD 389
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 111/255 (43%), Gaps = 65/255 (25%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E V ++++MG +DR V ALR A+ NP+RA EYL +G+P + A P A+
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMPAEEA--PSMDAT----- 168
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
P PA G P +L + S +++L
Sbjct: 169 -----------PDEPAGGEGEAVVPQEL-----------------------SEDSPLYFL 194
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
++ F+ Q + L VQ P +L MLQ++ NP L+ LI E+Q D
Sbjct: 195 ASNPSFL-------------QLRQL---VQEQPHLLPSMLQQIAASNPDLVSLINENQED 238
Query: 353 FLRLINEPVEG-----GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 407
F L+N E + V +T EE A+ERL +GFDR L L+ +
Sbjct: 239 FYILLNAEDENGGAPMPGAGGAAGAGGSGFPGVQLTQEEMAAVERLSQLGFDRNLALQAY 298
Query: 408 FACNKNEELAANYLL 422
AC K+E +AAN+LL
Sbjct: 299 IACEKDENMAANWLL 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+K F++++ + + +VK IE +G D YP +I+QGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 ENKVAENSFVVVM 73
E F+VVM
Sbjct: 60 SANFQEKDFLVVM 72
>gi|408389579|gb|EKJ69020.1| hypothetical protein FPSE_10799 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 12/103 (11%)
Query: 325 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVT 381
PQ+L+P+LQ+LG NP L LI + FL+L+ E + +P QA++
Sbjct: 12 PQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYADDD---------VPLPPGAQAIS 62
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 63 VTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQ 105
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 12/101 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI + FL+L+ E V+ +P QA+ VT
Sbjct: 291 MLEPILQQLGAGNPQLAQLIANNPDQFLQLLGEEVDDD---------VPLPPGAQAIQVT 341
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 342 EEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQ 382
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
QF LR +Q NPQ++ +LQ+ + NP L+R I E+ +FLRL + + N +
Sbjct: 22 QFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQDQQGAPQPNQV--- 78
Query: 373 ASAMPQAVTVTPEEREAIERL-EAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
A+ VTPEER AIERL + G D+ V+E +FAC+KNEEL A+YL + E
Sbjct: 79 ------AIQVTPEERAAIERLIQLTGMDKHEVIEAYFACDKNEELTASYLFERADE 128
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 162/410 (39%), Gaps = 95/410 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++AP Q +T SS PTS T P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSAPPPQTKTNSSFEPTSVGRGQWEGAITDPAT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
S +S + PPP+ AP S +A
Sbjct: 116 -SGAGGAPGGIAESRQGAEPPPSEAAP--------------------------SQGLALH 148
Query: 171 NLEAT-VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
++ T V I+ MG DRE V ALRAAY NP+RAVE+L T +P
Sbjct: 149 GIDPTLVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLC------TGIPSDVLQRMN 200
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
A NP A ++ TS +R S +
Sbjct: 201 EPAINPSASSERMSSLTDRLTS---------------------------HMRQDDSDSAL 233
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
Y+ + QF +R++VQANP+ L ++Q+L +P ++ LIQ+
Sbjct: 234 ---------------YNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQD 278
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV--TPEEREAIERLEAMG 397
FLR++ P + G P +V++ EER A++RL +G
Sbjct: 279 LEGFLRIMGNPGQTEFTTSTGGGVDVPPDSVSIPLREEERVAVQRLVELG 328
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 12/101 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI + FL+L+ E E +P QA++VT
Sbjct: 296 MLEPILQQLGAGNPQLAQLIASNPDAFLQLLGEDAEDD---------VPLPPGAQAISVT 346
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 347 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 387
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 102/218 (46%), Gaps = 44/218 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+S VK+ I +G D P SQ+ LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQTPAPT 118
+ E FVV M+ K K +++ A+ S+ PP Q +T
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVASTPVVPPAPVQTST-------- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A PPA P P + A P S L GS +
Sbjct: 110 ---------QAAPPATPTPNRS-AGTP------------------SGLAMGSERAEAIAN 141
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 142 MEAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPE 176
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 127/281 (45%), Gaps = 83/281 (29%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--- 220
S L G+ EA V + MG + R + A+RAA+ NP+RAVEYL +GIP+
Sbjct: 112 SALTMGNEREAAVANMESMG---FARADIDAAMRAAFFNPDRAVEYLLTGIPDSARQEQA 168
Query: 221 -------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA- 272
P +AGG G A AP+ G P++LF G A
Sbjct: 169 QAAQANAPSSPTPAAGGNTG-----------ATAAPSGGDE--PINLFEAARGGSGGAAR 215
Query: 273 ----------------GAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQA 316
A +L+FLRN+ Q +
Sbjct: 216 SGATGAAAGAGGATALNANSLEFLRNNPQFQQL--------------------------- 248
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 376
R +VQ PQ+L+P+LQ++G NP L ++I + FL+L+ E + + +
Sbjct: 249 -RQVVQQQPQMLEPILQQVGAGNPQLAQMIAANPEQFLQLLAEDADDD---------APL 298
Query: 377 P---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 414
P QA++VT +EREAIERL +GF+R +V++ +FAC+KNE
Sbjct: 299 PPGTQAISVTEDEREAIERLCRLGFERDIVIQAYFACDKNE 339
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + ++K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPAN 93
+ E F+V M++K+ + + + +SA N
Sbjct: 58 SYSIEEKGFIVCMVSKTPAAPAAPAPLSAVSQN 90
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 28/226 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL+ F ++V+PE V +K+ I G +P + Q LI+ GKVL D ++
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F+V+M++K+K + + +++ +A+ + A + P +T++ A PT
Sbjct: 58 DCNFKEKDFLVLMVSKAKAAPAASTSAAASSSTSAPAAPAQPAQPPAASTSNAMDATPTT 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A P PA A A AP S S + GS LE +Q +
Sbjct: 118 T------------TASNPQPASESTTAAAAAPGSDTS---------FLTGSALETAIQGL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
+DMG ++R V RA+RA++NNP+RA +YL++GIP P AR
Sbjct: 157 MDMG---FERPQVERAMRASFNNPDRAADYLFNGIPPGLLPTPAAR 199
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 376
+R MV+ NP +LQ ++Q + NP L+ I + L+L+ + EG +
Sbjct: 298 MRQMVRENPALLQELIQTIVANNPALLERINNNPEALLQLLAGGDD--EGEGDEGAGAGG 355
Query: 377 PQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 423
P + +T EE I+ L+ G R E + AC KN ELAAN+L +
Sbjct: 356 PMTIELTQEEMNDIQTLQDWTGASRDKAAEAYLACGKNVELAANFLFE 403
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 304 WYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 363
W S R F +R M++ NP++L+ +L L + +P I++HQ +FL +IN G
Sbjct: 192 WMSDPR----FARVRDMLRQNPELLEVVLSRLAETDPSAFEAIRDHQDEFLSMINGSSAG 247
Query: 364 --GEGNVLGQ---LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 418
GEG+ L + + +A +T+T EE A+ERL ++GF R L ++ + AC+KNEELAA
Sbjct: 248 SVGEGSDLSEDSEMDAASRHQITLTSEEAAAVERLVSLGFHRDLAVQAYLACDKNEELAA 307
Query: 419 NYLL 422
+ L
Sbjct: 308 DILF 311
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 46/234 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL ++E+ V +K+ + ++ + P Q LI+ G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+AE+ F+V+M G A PA A + PPT P T
Sbjct: 60 DYKIAEDKFIVLM---------GKKMPPAKPAGTA-AEENVPPT----------PPLTAG 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P ++ PP +S + A ++ Q++
Sbjct: 100 PSETRTHEIPP-----------------------LSPAPALVMAPPPAPPSMTPNEQRVR 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
D+ + + V ALRA++N+PERA+EYL SGIP+ P A A+A G A N
Sbjct: 137 DLMAMGYGEQEVRAALRASFNHPERAIEYLISGIPQNAPQP--ANATASGPAPN 188
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IEV+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEVEPTDLISAVKQKISEERGWD---PKLQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP----TTTSQTPA 116
K+ E FVV ++ K K + + A+ S+ + A + P T++S+
Sbjct: 58 SYKIEEKGFVVCVVNKPKAAPASAAAASSNAPPATPAAAPAATPAAPPAPAQTSSSEPAV 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P PQ E AP A P +S+ G A +A N+EA
Sbjct: 118 PATPTPQRAGE------------APGGANFNDPNMLST-----GAARDEAIA--NMEA-- 156
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPVARASA 228
MG ++R + A+RAAY NP+RAVEYL +GIPE Q PP ARA+
Sbjct: 157 -----MG---FERTQIDAAMRAAYFNPDRAVEYLLNGIPENLRQATQPPAARAAG 203
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLG 370
QF LR +VQ NP LQ +L ++G+Q P L++ I +Q +FL+++NEP+ + V
Sbjct: 224 QFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEPMISAMPQEQVQQ 283
Query: 371 QLASAM-PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 421
+ AM Q + ++ EE A++RL MGFDR+ + + AC+KNE LAAN L
Sbjct: 284 YMNMAMQAQVLRLSEEEMAAVDRLTEMGFDRSEAAQAYLACDKNEALAANLL 335
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLKG F +EV+ E V++VK I+T + PAS LIH GKVLKD +E
Sbjct: 1 MNLTVKTLKGGKFTVEVEAEKTVAEVKVAIQTNKD---LPASSMKLIHSGKVLKDEDKIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ N F+VVM+ +KVSS
Sbjct: 58 SCNIKPNDFLVVMI--AKVSS 76
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 28/216 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +S+VK I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + + +S+ + AP+ A T++ P P +S T V
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSSSTTNTAV- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P+PA A P+ P+ + L G+ A + ++
Sbjct: 117 -----------PATPSPAGASVPSVQATPS----------NETTGLAMGAERSAQIAEME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+ N ERA+EYL +GIPE
Sbjct: 156 AMG---FERSQIDLAMRAAFFNSERAIEYLLTGIPE 188
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
+L+P+LQ++G NP L +LI ++Q FL+L++E ++ QL A++VT EE
Sbjct: 273 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDD-----AQLPPG-AHAISVTEEE 326
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
R+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 327 RDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQ 364
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
+L+P+LQ++G NP L +LI ++Q FL+L++E ++ QL A++VT EE
Sbjct: 273 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDD-----AQLPPG-AHAISVTEEE 326
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
R+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 327 RDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQ 364
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 128/315 (40%), Gaps = 101/315 (32%)
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
+ +A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP +
Sbjct: 74 LQSRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAE 130
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+ ++ NP + P+ P P S +A + + +
Sbjct: 131 EGT----FYNRLNESTNP-----SLIPSGPQPASATSA-----------ERSTESNSDPF 170
Query: 278 DFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGK 337
+FLR+ QF +R+++ NP +L +LQ++G+
Sbjct: 171 EFLRSQP----------------------------QFLQMRSLIYQNPHLLHAVLQQIGQ 202
Query: 338 QNPHLMRLIQEHQTDFLRLINEPV--EGGEG------------NVLGQLASAMPQAVTVT 383
NP L++LI E+Q FL ++N+P+ E G + L + P T
Sbjct: 203 TNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVAT 262
Query: 384 PEEREA----------------------------IERLEAMGFDRALVL--------EVF 407
+R A + R + +R L + +
Sbjct: 263 SAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAY 322
Query: 408 FACNKNEELAANYLL 422
FAC KNEE AAN+LL
Sbjct: 323 FACEKNEEQAANFLL 337
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 12/101 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L LI + FL+L+ E + + +P QA++VT
Sbjct: 287 MLEPILQQLGAGNPQLAELIATNPDQFLQLLGEYADDD---------TPLPPGAQAISVT 337
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 338 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 378
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 12/106 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI + FL+L+ E + +P QA++VT
Sbjct: 267 MLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDADDD---------VPLPPGAQAISVT 317
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D + E
Sbjct: 318 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQPEDDE 363
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++G + A A A ++ A S Q P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVPS---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + A A ++ +D S L GS EA + Q+
Sbjct: 113 ---------------TPTPASSGATTAATGEAAAFND-----PSALAMGSQGEAVISQME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R + RA+RAA+ NP+RAV+YL +GIPE
Sbjct: 153 AMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPE 185
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 6/104 (5%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
+L+P+LQ++G NP L +LI ++Q FL+L+ E + G EG + + VT EE
Sbjct: 274 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAEDL-GDEGEL-----PPGAHEIRVTEEE 327
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
R+AIERL +GF R V++ +FAC+KNEELAAN+L + E ED
Sbjct: 328 RDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFEQPDEGED 371
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 6/111 (5%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
QFQ + ++ NP +LQP++Q+L + NP + RL+Q++ FL+L+ E G L
Sbjct: 207 QFQHIAQAIRQNPALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGGQTLP-- 264
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
P A+ VTPEE+ I+ + +MGFD+ LE + C+KN+ELA NYL +
Sbjct: 265 ----PNAIQVTPEEKADIDDIISMGFDKNDALEAYITCDKNKELAINYLFE 311
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 43/220 (19%)
Query: 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTT 58
MK+ +KTLKGT F ++ ++ V+++K+ I T + + L+H+GK L +D T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L E + +N FV++M + K A A ++ TTS+A T+T PTT P P
Sbjct: 58 LGELGIKDNDFVILMFFQKKAEKEDAP--QQAQSDTTSTTSAASTTATNPTTV---PKPA 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
V+ P + ++ S+L+ G LEA +++
Sbjct: 113 VSQPATTQQTGSQGTG-----------------------------SDLLQGPELEAKIKE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ 217
I MG ++R V++AL+AAY NPERAV+YL SG IP++
Sbjct: 144 IESMG---FERPKVLQALKAAYYNPERAVDYLLSGNIPKE 180
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 12/101 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L LI + FL+L+ E + +P QA++VT
Sbjct: 288 MLEPILQQLGAGNPQLAELIASNPDQFLQLLGEDADDD---------VPLPPGAQAISVT 338
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 339 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 379
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K
Sbjct: 61 EVMIDPSKFVVVMIARKK------------------------------------------ 78
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVA-GSNLEATVQQI 179
P AP + P P+ PA A A SV+D N S E T Q I
Sbjct: 79 -----PIGAPVESTPQPSNLQIPAGAQATTAPVSVADSGPSTPQNPDGLTSEQEETAQAI 133
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+
Sbjct: 134 VAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEE 168
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 386
+L+P+LQ++G NP L +LI ++Q FL+L++E ++ QL A++VT EE
Sbjct: 320 MLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDD-----AQLPPG-AHAISVTEEE 373
Query: 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
R+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 374 RDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFEQ 411
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 72/107 (67%), Gaps = 14/107 (13%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT---VT 383
+L+P+LQ++G+ NP + +LI +++ FL+L++E + +A+P T VT
Sbjct: 273 MLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD-----------AALPPGTTQIHVT 321
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + +D
Sbjct: 322 EEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDDGDD 368
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 72/107 (67%), Gaps = 14/107 (13%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT---VT 383
+L+P+LQ++G+ NP + +LI +++ FL+L++E + +A+P T VT
Sbjct: 282 MLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD-----------AALPPGTTQIHVT 330
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + +D
Sbjct: 331 EEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDDGDD 377
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q LR +VQ NP ++QP++Q+L + NP + + I +H ++L+ + +G+
Sbjct: 267 QIAQLRELVQQNPALVQPLVQQLAQSNPAIAQAIIQHPEAIMQLLGVDGDDFDGDDDMNP 326
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+ VT EE+ AI+RLEAMGF R V+E +FAC+KNEELAANYL D+ E +D
Sbjct: 327 PPGT-HVMHVTEEEQAAIQRLEAMGFPRQKVIEAYFACDKNEELAANYLFDNGFEDDD 383
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G+ L+ TV + +MG + RE V+RALRA++NNP+RAVEYL +GIP
Sbjct: 133 SSFVTGNVLQETVNNMTEMG---FPREQVLRALRASFNNPDRAVEYLMNGIP 181
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 12/103 (11%)
Query: 325 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVT 381
P +L+P+LQ++ NP L ++I ++ F++L+ E + +V A+P Q +
Sbjct: 290 PAMLEPILQQVAAGNPQLAQMITQNPEQFMQLL---AEDADDDV------ALPPGAQQIA 340
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
VT EEREAIERL +GF+R L ++ +FAC+KNEELAAN+L D
Sbjct: 341 VTEEEREAIERLCRLGFERDLAIQAYFACDKNEELAANFLFDQ 383
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 12/101 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI + FL L+ E + +P QA++VT
Sbjct: 300 MLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD---------VPLPPGAQAISVT 350
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 351 EEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 391
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 11/107 (10%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NP L +LI ++ FL L++E GG+ + + +P ++VT
Sbjct: 290 MLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--SGGDDD------APLPPGAHQISVT 341
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
EER+AIERL +GF + ++ +FAC+KNEELAAN+L D + ED
Sbjct: 342 EEERDAIERLTRLGFTQDQAIQAYFACDKNEELAANFLFDQPDDDED 388
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 16/103 (15%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP-----QAVT 381
+L+P+LQ+LG NP L +LI + FL L+ E + +P QA++
Sbjct: 283 MLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESAD-----------DDVPLPPGAQAIS 331
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 332 VTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 374
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 45/227 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG +P Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + E F+VVM++K K A+ V +APA
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAADKPVESAPA------------------------- 92
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD---VYGQAASNLVAGSNLEA 174
E A A APA + +P+S ++ G + + + G LE+
Sbjct: 93 --------AEEANKDDATAPAANTTATQSTTTSPISDSTEGQTTTGGDSGSFLTGGPLES 144
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ +++MG + RE V RA+RAA+NNP+RAVEYL +GIPE A P
Sbjct: 145 AMSSMMEMG---FQREQVQRAMRAAFNNPDRAVEYLMTGIPEHLANP 188
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 324 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 383
NP LQP++Q + + NP L + L L+ GG G + +P ++
Sbjct: 323 NPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAAGGAGEEM-----ELPTLAELS 377
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
++R ++E++ AMG A +E +F C KN E+A Y ++ +FED
Sbjct: 378 EQDRTSVEQIVAMGIPEAKAIESYFMCGKNVEMAVQYYFENPQDFED 424
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 16/108 (14%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP-----QAVT 381
+L+P+LQ+LG NP L +LI + FL L+ E + +P QA++
Sbjct: 277 MLEPILQQLGAGNPQLAQLIAANPEQFLGLLGEDAD-----------DDVPLPPGAQAIS 325
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D + E
Sbjct: 326 VTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQPDDDE 373
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F +E++ V ++K IE QG D +PAS Q LI+ GK+L D L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E SFVVVM+TK + A P T ++ + VA
Sbjct: 60 SYNIDEKSFVVVMVTKRLQTEEKKEE----------KKEEAKPQETAAAASASASSAPVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ ++A A PA S + + A S LV G + V +++
Sbjct: 110 MEEGTTKAAEEKKTEEKAAEPAAETKTQEESSSGLQ-AFHSAESTLVTGEEYQNMVTELM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYL 210
+G + R+ VIRA++A+YNNP RA EYL
Sbjct: 169 SLG---FPRDKVIRAMQASYNNPNRAAEYL 195
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ + PEER+AIERL+ +GF LV++ +FAC+KNE LAAN+LL
Sbjct: 422 IELMPEERDAIERLKGLGFPEELVIQAYFACDKNENLAANFLL 464
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL GIP+
Sbjct: 209 FHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYLVVGIPD 263
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
QFQ LR + ++P +L LQ LG+ NP L+++I + Q +F+ LIN+
Sbjct: 304 QFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALINQ 350
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 25/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + +SDVK IE +G + A+QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPTELISDVKAKIEKEKG---WEAAQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M++K K + + A + +T++ P P VA
Sbjct: 58 SYKIEEKGFIVCMVSKPKPAPA------------AAAPKEPATPAPAASTSTPVPPPVVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P+ P+PA A A +D S L G+ V +
Sbjct: 106 SNSGT--NTGIPSTPSPAGAGVSATPAPAPAQPQFND-----PSALTIGAQRAEAVANLE 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R ++ A+RAA+ NP+RAVEYL +GIPE
Sbjct: 159 SMG---FERASIDAAMRAAFFNPDRAVEYLLNGIPE 191
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 163/410 (39%), Gaps = 95/410 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ + VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQP-T 109
E V EN+ ++ K + A ++ P Q +T SS PTS T+P T
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ + + + PQ E PPP+ AP+ A ++G +
Sbjct: 116 SGAGGASGGITEPQQGAE--PPPSEAAPSQGLA---------------LHGVDPT----- 153
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
V I+ MG DRE V ALRAAY NP+RAVE+L T +P
Sbjct: 154 -----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLC------TGIPSDVLQRMN 200
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMM 289
A NP A ++ TS +R
Sbjct: 201 EPAINPSASSERMSSLTDRLTS---------------------------HMRQDD----- 228
Query: 290 FYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 349
D Y+ + QF +R++VQANP+ L ++Q+L +P ++ LIQ+
Sbjct: 229 ----------SDSALYNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQD 278
Query: 350 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV--TPEEREAIERLEAMG 397
FLR++ P + G P +V++ EER AI+RL +G
Sbjct: 279 LEGFLRIMGNPGQTEFTTSTGGGGDVPPDSVSIPLREEERVAIQRLVELG 328
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 18/220 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + E+ + V D+K +I + + P S Q LI+ GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIP-SWQTLIYSGKILEDKNTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K++E F+V+M+ K + +T + +++ ++ S T++QP T+ P T
Sbjct: 58 SYKISEQGFIVMMIKKPR---EAPATATTTSPSESTSSPSNSTTTSQPANTTSAPVTTPN 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P + P + P P+ +P+ +S +D V G+ LE T++ I+
Sbjct: 115 PTPARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTD--------FVTGTELENTIKNIV 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219
DMG + RE VIRALR YNN +RAVE L SG IPE A
Sbjct: 167 DMG---FQREQVIRALRLGYNNADRAVELLLSGSIPENAA 203
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 11/116 (9%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL---- 369
F LR + +P I+ +LQ+L + NP L+R I E DF+R+ G G V
Sbjct: 236 FPMLRQAIAQDPNIIPTLLQQLAQSNPELVRQISERPNDFIRIFQGEEGGNGGGVGGSQP 295
Query: 370 GQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 424
GQ + VT EE +AIERL+ + G ++ +V+E +FAC+KNEELAA+YL +
Sbjct: 296 GQF------TIQVTREENDAIERLQQLTGLEKQVVIEAYFACDKNEELAASYLFER 345
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q A+R MVQ NP ++QP+LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 280 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 339
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 340 GPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 392
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++ K
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSRPK 65
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 114/250 (45%), Gaps = 63/250 (25%)
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT 250
+VI AL NN E AVEYL +A A + Q A+ PAA P
Sbjct: 77 SVIVALEICSNNREAAVEYLMD--------------NAADMAVDLLEQQSAETPAASVPG 122
Query: 251 SGPNANPLDLFPQGL--PNMGSNAGAGT----LDFLRNSQQVSMMFYLFASLLFICDVFW 304
G + GL P+M AG L FLR + VF+
Sbjct: 123 IGVS---------GLQAPDMAVAAGGARNERPLAFLRGNP-----------------VFF 156
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-- 362
++ ++Q +P +L ++Q + NP+LMR+I E+Q +FL +INE E
Sbjct: 157 -----------EMKRLLQEDPSLLPYLMQRIQYSNPNLMRIISENQEEFLAMINENSELA 205
Query: 363 --GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
E L +A+AM ++TP + +AI+RL+A+G+ LV++ + AC ++E AA +
Sbjct: 206 PDNREAQELESIAAAMVN--SLTPSDMDAIDRLKALGYPEHLVIQAYIACERDEYKAAEF 263
Query: 421 LLDHMHEFED 430
L+ E ED
Sbjct: 264 LVSQNLEDED 273
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ I + G YP +Q LI+ GKV++D L
Sbjct: 1 MKITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQ-AYPVERQWLIYLGKVMEDSHPL 59
Query: 60 EENKVAENSFVV 71
+ + + FV+
Sbjct: 60 SQYNLDDKKFVM 71
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q A+R MVQ NP ++QP+LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 276 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 335
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 336 GPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++ K
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSRPK 65
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 125/286 (43%), Gaps = 62/286 (21%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG----I 214
Y S L+ G L+ + I MG ++RE V +A+ AYNNP A++YL +G I
Sbjct: 1 YSNPESILLTGDKLKEAIDNICAMG---FERELVQKAMVLAYNNPNVAIDYLTNGFQDII 57
Query: 215 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
E + + S NP + + + N N LD +M N+ A
Sbjct: 58 DEGHDISDIKDPSE-----NPNDRDENYSNLSNLLM---NYNLLD--ENERQDMSVNSEA 107
Query: 275 GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQE 334
LRNS F +R +NPQ + +L+
Sbjct: 108 -----LRNSPF----------------------------FNIIRDAALSNPQRIPEILEM 134
Query: 335 LGKQNPHLMRLIQEHQTDFLR-LINEPVEGGEGNVL---GQLASAMPQAV--------TV 382
+G+ +P L+ I+E+Q +FL L N + N L + A Q ++
Sbjct: 135 IGRSDPSLLEYIRENQNEFLNALQNYDTDNNAENDLIPNYEYADEANQNTDNFNIPIASL 194
Query: 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
E E++ +LE++GF + + LE F AC+KNEE+AANYL ++M+++
Sbjct: 195 NESEMESVRKLESLGFPKHVALEAFIACDKNEEMAANYLFENMNDY 240
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q R V NP +LQPM+Q++ + NP+L + ++++ L+L+ G
Sbjct: 287 QLGQFRNTVMQNPALLQPMIQQIAQSNPNLAQYLEQNPEALLQLLGAIGGEGGLEEGEGG 346
Query: 373 ASAMPQAVTV---TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
+P TV TPEER AIERLEA+GF R V+E +FAC+KNEE+AANYL + + FE
Sbjct: 347 EGGIPPGATVLQVTPEERAAIERLEALGFPRQQVVEAYFACDKNEEMAANYLFE--NGFE 404
Query: 430 D 430
D
Sbjct: 405 D 405
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 42/52 (80%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ ++G L+A++Q +++MG ++R V+RA++A++NNP+RAVEYL +GIP
Sbjct: 142 TSFLSGDALQASIQNMIEMG---FERAQVMRAMKASFNNPDRAVEYLMNGIP 190
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 12/101 (11%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ+LG NPHL +LI ++ FL+L++E G + +P Q ++VT
Sbjct: 288 MLEPILQQLGAGNPHLAQLIAQNPEQFLQLLSES---------GDDDAPLPHGAQQISVT 338
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
EER+AIERL +GF + ++ +FAC+KNEELAAN+L D
Sbjct: 339 EEERDAIERLVRLGFTQDQAIQAYFACDKNEELAANFLFDQ 379
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus anophagefferens]
Length = 371
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-------- 364
QF LR +QANP LQ +L +G+ +P L+ LI +Q +FL+++NEP+ G
Sbjct: 208 QFDDLRRTIQANPGALQQVLAGIGRDSPELLALIHANQAEFLQMMNEPLLGAISGGGGMG 267
Query: 365 -EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
G V +T EE +A+ RL+ +GF R ++ + AC+KNE LAAN L D
Sbjct: 268 GGGRGPPGGGGGAGNVVRLTREEADAVGRLQELGFSRDDAVQAYLACDKNESLAANLLFD 327
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V VKTL+G F++E PE + VK IE Q A+ LIH GKVLKD TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 ENKVAENSFVVVMLTKSK 78
+ V E SF+V M+TK K
Sbjct: 59 DKGVTEQSFLVCMVTKPK 76
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F++E +P D + VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
K+ E F+V M +K K APP+ P T +++ A T
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APPSKPADPATPAKSVASTP 95
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
APP + + A A+ APA + A V++ +D S L G A + +
Sbjct: 96 APPAAPAQFATSAASQAPATPSPAPASTASGDVATFND-----PSALAMGEQRAAAIANM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 151 EAMG---FPRDQIDAAMRAAFFNPDRAVEYLLNGIPE 184
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------INEPVEGG 364
Q Q LR +Q+NP+++QP+L++L NP + LIQ+ F+R + +EG
Sbjct: 214 QMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPEAFIRTFLGAGGEDLGFEIEGD 273
Query: 365 E-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
E G G+ + ++ +++ AI RL +GF+R LV++V+ AC+KNEE+AA+ L
Sbjct: 274 ESGFTGGEAGEEGTVRIQLSEQDQSAINRLCELGFERDLVIQVYLACDKNEEVAADILFR 333
Query: 424 HM 425
M
Sbjct: 334 DM 335
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-- 221
S G+ EAT+Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE P
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 222 PVA 224
PVA
Sbjct: 138 PVA 140
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 34/216 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K LK F I+ +P + + +K IE+ +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MRLTFKDLKQAKFTIDAEPSETIGTLKSKIESEKG---WETSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
K+ E F+V M +K K APPT +P T PAP
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APPTKPAEPAT----PAPKS 91
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+VP +AP +AP+ P P+PAPA + S L G A + +
Sbjct: 92 VSTPAVP-AAPAQSAPSNTSQPPATPSPAPASAAGSEGTSWNDPSALALGEQRSAAIANM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG + R+ + A+RAA+ NP+RAVEYL +GIP
Sbjct: 151 ESMG---FPRDQIDLAMRAAFFNPDRAVEYLLNGIP 183
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 17/126 (13%)
Query: 316 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE------------PVEG 363
+LR ++Q P++ + +LQ++ NP L +IQ + F+R I P E
Sbjct: 294 SLRELLQQRPEMAEIVLQQMAXSNPQLAEVIQRNPEAFMRYITSGDQDALAESLGIPKEY 353
Query: 364 GEGNVLGQLASAMPQA----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
EG+ A +A + VTPEE AI RL +GFDR+LV++V+FAC+KNEE+AAN
Sbjct: 354 LEGSGXVDDAEDGEEANVPRIEVTPEENAAINRLCELGFDRSLVIQVYFACDKNEEMAAN 413
Query: 420 YLL-DH 424
L DH
Sbjct: 414 LLFSDH 419
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K K F IEV+P D + K+ + Q D P Q ++ GK+LKD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V + ++ M +K + S P +AQ S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRKQKS-----KPEPKPEAQAXXGXAEXSS-------------- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+A ++ PA A SS S G + VQ I+
Sbjct: 99 ------ENAAVESSSTSNXXSXPAQIXAENQESSTG-AXEFTESTFAIGRARQTAVQNIM 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++RE V RAL AA+NNP+RAVEYL +GIPE
Sbjct: 152 GMG---FEREQVERALTAAFNNPDRAVEYLLNGIPE 184
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 31/152 (20%)
Query: 308 FRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL-------RLINEP 360
FR F A+R M +NPQ L +LQ +G+ +P + I+++QT+FL IN+
Sbjct: 235 FRNSTFFNAIRDMALSNPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAALQNYGNNINDH 294
Query: 361 VEGGEGNV-----------------LGQLASAMPQA----VTVTP---EEREAIERLEAM 396
E + N+ +GQ + P + +TP E E+I++LE++
Sbjct: 295 EEHSDDNLDNADDENAIQNDSFLQDVGQQVLSDPNNENINIPITPLNENEMESIKKLESL 354
Query: 397 GFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
GF + + LE F AC+KNEE+AANYL ++M++F
Sbjct: 355 GFPKHVALEAFIACDKNEEMAANYLFENMNDF 386
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V P+D + D+KK +E V P+ +Q LI GK+LKD
Sbjct: 1 MKIKVRTLQNNEEEINVDPDDSILDLKKKVEVVLAD--MPSDKQKLIFSGKILKD----- 53
Query: 61 ENK----VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E+K + +N V+VM+T+ ++ + N+ + + +
Sbjct: 54 EDKATDILKDNDTVIVMVTRRIINKNN----QKEDINKESLSKIENNNNNNNNKSDDNIN 109
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
T + + E+ ++ + + A S L+ G L+ ++
Sbjct: 110 VTTSNTEEQKENKENKNDNTN---------------DNIYNSFNNAESMLLTGDKLKESI 154
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
I MG +++E V +A+ AYNNP RA++YL +G P
Sbjct: 155 DNICAMG---FEKEQVKKAMILAYNNPNRAIDYLTNGFP 190
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 16/99 (16%)
Query: 339 NPHLMRLIQEHQTDFLRLIN-------EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 391
+P L++ I + Q +F+ L+N +P E N P +++TP E E+IE
Sbjct: 237 HPELLQTIIQRQDEFMELLNSGAGAEADPYSNTEHN---------PNIISLTPVEMESIE 287
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
RLE +GF R V+E + AC+KNEELAANYLL++ H+F++
Sbjct: 288 RLEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFQE 326
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 51/219 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L++ + + + V+V+ +S+TP
Sbjct: 56 LLKDYSDIKDGDKVIVI-------------------------------------SSKTPD 78
Query: 117 PTVA-PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEA 174
P+ P S P S P + AP P+P P+ +VS Y +S LV GS LE
Sbjct: 79 PSKHQDPNSQPSSTTTPTSKAPQPSPLDNSPHQPSSGHNVSQQTYETVSSKLVMGSELEQ 138
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G
Sbjct: 139 SINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTG 174
>gi|238582807|ref|XP_002390045.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
gi|215452995|gb|EEB90975.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
Length = 151
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q Q LR + +P+ Q ++Q+L Q P L++ ++ F+RL++ + +
Sbjct: 40 QIQQLREHIAQHPESAQALIQQLAAQYPQLIQTFAQNPDAFIRLLDLDPQS--------M 91
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
A ++VT EER AIERLEA GF R VLE + AC+K+E +AANYL +H +E +D
Sbjct: 92 APQGSHVISVTEEERAAIERLEAFGFPRHKVLEAYLACDKDETMAANYLFEHGYEDDD 149
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 15/128 (11%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------INEPVEGG 364
Q Q LR +Q+NP+++QP+L++L NP + +I E F+R + +EG
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIRTFLGAGGEDLGFDIEGE 291
Query: 365 EGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
+ ++LG A + ++ ++ AI RL +GFDR LV++V+ AC+KNEE+A
Sbjct: 292 DADMLGGADGDGEGADAPGTVRIPISEQDENAINRLCELGFDRNLVIQVYLACDKNEEVA 351
Query: 418 ANYLLDHM 425
A+ L M
Sbjct: 352 ADILFRDM 359
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
S GS EAT+ I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPE 110
>gi|440791110|gb|ELR12364.1| UBA/TSN domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN----- 367
QFQ +R+++Q P + +L +LG NP L LI ++Q +FL +N+ EGG+G+
Sbjct: 188 QFQRIRSLLQTRPDLFAALLTQLGGSNPQLHELISQNQAEFLEWLNDE-EGGDGDGSDIA 246
Query: 368 -VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
V A ++ + +I RL +GF R +V + + AC KNEE+AANYL ++
Sbjct: 247 VVQTGGGGGGGAAAQLSQRDESSITRLMELGFGRDVVRQAYLACGKNEEMAANYLFEN 304
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
F LR + NP I+ +LQ+L + NP L+R IQE+ +F+RL G
Sbjct: 233 HFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG-------- 284
Query: 373 ASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 423
+ + VT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 285 GNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 336
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 13/213 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++ F+ +M+ K + + + S P +T+ T P +
Sbjct: 58 SYNITDSGFIXMMIKKPREAPATTPAPSTTPHLNYISTNHHHYCRTNPN-------HXLT 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P PA + S S Q +S+ G+ LEAT++ I
Sbjct: 111 NNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFATGTELEATIKNIT 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
DMG + R+ V+RALR +NN ERA+EYL SG
Sbjct: 171 DMG---FARDQVLRALRLTFNNAERAIEYLVSG 200
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
F LR V +P+ L P+LQ+LG+ NP L+++I +HQ FL ++ E + E + + L
Sbjct: 250 FGMLRAAVAQDPRALVPLLQQLGRTNPELVQVINQHQQAFLAMLTEAGDDDEDDAMAALL 309
Query: 374 SAMPQAVT-------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426
++P++ AI RL A+GFDR LE + AC++NEE+AAN+L ++M
Sbjct: 310 GGAGGGGEGGGMVVELSPDDEAAIGRLAALGFDRNACLEAYLACDRNEEMAANFLAENMF 369
Query: 427 E 427
+
Sbjct: 370 D 370
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q A + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFNVEAEDSMTIGALKDKVQETQPDCTREAMK--LVYKGKVLDDATTVG 58
Query: 61 ENKVAENSFVVVML 74
+N+V E F+VV +
Sbjct: 59 DNQVTEQGFIVVFI 72
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 7/114 (6%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV----- 368
F ++ ++Q +P +L +LQ++ NP LMR+I E+Q +FL LINE E G +
Sbjct: 228 FLEMKRLLQEDPSLLPHLLQKIQSSNPDLMRIISENQVEFLSLINEGTEEPTGRMGVPRE 287
Query: 369 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
L A+AM ++T + + +AI+RL+A+GF LV++ + AC +NE AA++L+
Sbjct: 288 LETTAAAMVDSLTQS--DMDAIDRLKALGFPEHLVIQAYIACERNEYQAADFLV 339
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F+IEV E D V +K+ D YP +Q LI+ GK+++D L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + FVVVM N+ TT+ A P ++ T +
Sbjct: 60 SHYSLDDKKFVVVM-------------------NKKPTTAPAEPAASSSATAPAESKSST 100
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A ES A A A +++ VQ+I
Sbjct: 101 AK----SESGAQSEATAAASKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQRI 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
+MG + E AL NNP+RAVEYL S I
Sbjct: 157 TEMG---YSLEEARIALEICDNNPDRAVEYLLSEI 188
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
F LR + NP I+ +LQ+L + NP L+R IQE+ +F+RL G
Sbjct: 234 HFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG-------- 285
Query: 373 ASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 423
+ + VT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 286 GNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K ++V+ D V K+ + +G D +SQ L++ GKVL+D LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E + ++ M+ K+K T + P ++ T S++ +T+++ + + +
Sbjct: 58 SYKLKEGASIIFMINKTK------KTPTPVPETKSTTESTSQEQVQAQGSTNESTSSSTS 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
+ +A AA A + P QA SN GS EA++Q
Sbjct: 112 STTTTTAAAAAAAAGAASTGTTTTSEQQPE----------QAVSNESTFAVGSEREASIQ 161
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 162 NIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPE 197
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 24/134 (17%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLG 370
Q Q LR +Q+NP+++QP+L++L NP + LI + F+R+ + G G GN LG
Sbjct: 300 QMQLLRAALQSNPELIQPLLEQLAASNPQIASLISQDPEAFVRMF---LSGAPGSGNDLG 356
Query: 371 -------------------QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 411
+ + ++ ++ AI RL +GF+R +V++V+ AC+
Sbjct: 357 FEFEDEGAGGAGGATTGGDEEEEEGTIRIQLSEQDNNAINRLCELGFERDIVIQVYLACD 416
Query: 412 KNEELAANYLLDHM 425
KNEE+AA+ L M
Sbjct: 417 KNEEVAADILFRDM 430
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGG--EGNV 368
Q +R M+Q NP++L +LQ+L NP L++ IQ +Q F+ ++N P GG EGN
Sbjct: 204 QLGEIRNMIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILNGSAPPAGGVEEGN- 262
Query: 369 LGQLASAMPQAVTVTPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMH 426
Q + ++PEE EAI R++++ + ALV+E +FAC+KNEE A N++ +
Sbjct: 263 -AQARQPRRHVIHLSPEEAEAIARIKSIVSNAPEALVVEAYFACDKNEEAAINFIFSSLD 321
Query: 427 E 427
E
Sbjct: 322 E 322
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 47/216 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ E +++VK + + +G D P Q+ LI+ GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + FVVVML K KV T+ +P +T+ + AP V
Sbjct: 62 EVGFDSSKFVVVMLAKKKV------------------------TAAEPASTATSSAPVV- 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+AP A + A APA ++ S E TV I
Sbjct: 97 -----QENAPSTPAAPAPASIADPVPAAPAAAEQLT-------------SQQEDTVSAIT 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG +DRE I ALRAA+ N +RAVE+L +GIPE
Sbjct: 139 GMG---YDREQTIAALRAAFWNADRAVEFLLTGIPE 171
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 36/216 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ P V D K + T + + SQ LI+ GKVL+D L+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNLQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+ + + V+ M++K K ++ A+ + A A+ + + SA TT ++T A A
Sbjct: 59 ESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSA-------TTNTETQAAGSA 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P AP P + V G TV +I+
Sbjct: 112 AETTATAPAQPSTTQAPVSTP-----------------------DFVVGQQRNETVDRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+MG ++R+ V RALRAA+NNP+RAVEYL GIPE
Sbjct: 149 EMG---YERDQVERALRAAFNNPDRAVEYLLMGIPE 181
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ- 371
QFQ + ++ NP +LQP++ +L + NP L L+Q++ FL+L+ + GGE +
Sbjct: 215 QFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQAT-GGEQCIFFDN 273
Query: 372 -------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
A+ VTPEE+ I+ + ++GFD+ LE + +C+KN+ELA NYL D
Sbjct: 274 VILIFFFFVEVSRNAIQVTPEEKADIDEIVSLGFDKNDALEAYISCDKNKELAINYLFD 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
AS++V G+ LEA + I MG ++R VI+AL+AAYNNPERAVEYL SG
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSG 169
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 82/246 (33%)
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
Q++ D+ ++ + V ALRA++N+PERA+EYL +GI P
Sbjct: 111 QRVRDLILMGYEEQDVRAALRASFNHPERAIEYLITGI---------------------P 149
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASL 296
Q QQ A GS+ GA S+ + YL
Sbjct: 150 NQADQQQTTA----------------------GSHDGAEV------SEAAERLNYLATDP 181
Query: 297 LFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 356
+F +R +V+ NP++L+ +L L + +P I+ +Q +F+ +
Sbjct: 182 ----------------RFAHVRDLVRQNPELLELVLSHLRETDPAAFATIRNNQEEFVNM 225
Query: 357 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 416
+N+P A ++ ++ A+ERL A+GF+R +V+ V+ AC+KNEEL
Sbjct: 226 LNQPT-----------------AADLSSDDEAAVERLMALGFERDVVVPVYLACDKNEEL 268
Query: 417 AANYLL 422
A+ L
Sbjct: 269 TADLLF 274
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE +P D +S VK+ + G D PA Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M++K K + S++ ++ T P +Q A
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + AP + ++ + QA +N+ A
Sbjct: 118 APATPSPN-------------RTSGAPNDSSALAMGEQRAQAIANMEA------------ 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARA 226
MG ++R + A+RAA+ NPERAVEYL +GIPE QTA V A
Sbjct: 153 -MG---FERSQIDAAMRAAFFNPERAVEYLLTGIPENVQQQTAAQRVGHA 198
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 118/279 (42%), Gaps = 94/279 (33%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV----PPVARASA 228
E ++ I+++G DRE + LRAA + +RA YL++GIPE + V P RA
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPEDSVVQEPAPQEPRAEE 163
Query: 229 -GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVS 287
GG+A A+ +AQ+ LD L N
Sbjct: 164 QGGEAPAVDAEAEAQEHE------------------------------DLDILAN----- 188
Query: 288 MMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347
L Q + +R +VQ NP+ L P+LQ++ NP L+R IQ
Sbjct: 189 -----------------------LPQLEEIRQLVQQNPENLAPILQQIAAHNPRLVRTIQ 225
Query: 348 EHQTDFLRLINEPVEGGEGNVLGQLASAMP------------------QAVTVTPEEREA 389
+Q +F+ ++N G GQ +P + V + E+ +A
Sbjct: 226 NNQQEFMDMLN----GA-----GQYDQNLPGAGAGAAGAAAGGQGGRRRVVHLNQEQLDA 276
Query: 390 IERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 427
I R++A+ A V+E +FAC+++EE A N++ + M E
Sbjct: 277 INRIKAIVNASEATVVEAYFACDQDEEAAINFIFNTMDE 315
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 52/214 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G F+IEV+P + V ++K+ IE + + +QQ L+ +G +L++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+ K Q P Q
Sbjct: 58 ELGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A P APAP N+V GS +A +Q ++
Sbjct: 105 ---------------------AFKPVVAPAP------------QNMVTGSEYDAAIQNLI 131
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + E A++AAYNNP+RA+EYL +GI
Sbjct: 132 QMGFAKSECEA---AMKAAYNNPDRAIEYLLNGI 162
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
Q LR NP+ + +L +L + NP L + IQ++ ++LI +GGE
Sbjct: 185 LQQLREQFIQNPEAILQLLPQLQQTNPQLYQQIQQNPEALVQLILGGHQGGED------- 237
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
+T EE + + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 238 ---EIETEITQEEEQQLNQLIMMGFTKEDALEGFLACDKNVETAASYLFE 284
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 315 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 374
Q LR +V NP +LQ ++Q+L + NP L + + L+++ G EG LG
Sbjct: 285 QQLRELVAQNPALLQGLIQQLAENNPELANQLANNPEMLLQVL--AAAGAEG--LGDDDE 340
Query: 375 A-MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+P Q V +T EE ++++RLE +GF R VLE + AC+KNEELAANYL ++
Sbjct: 341 GPLPPGAQVVQLTQEEMQSVQRLEQLGFSRQAVLEAYLACDKNEELAANYLFEN 394
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G L+ ++ +++MG ++RE V+RALRA++NNP+RAVEYL++GIP
Sbjct: 145 SSFVTGDALQQSINGMIEMG---FEREQVMRALRASFNNPDRAVEYLFNGIP 193
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 16/112 (14%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
F LR +Q NP ++ +LQ+ + NP L+R I E+ +FLRL EP +
Sbjct: 22 FPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQEFLRLFQEPQQV---------- 71
Query: 374 SAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 424
A+ V+ EEREAIERL + G ++A V+E +FAC+K+E+L A+YL +
Sbjct: 72 -----AIQVSQEEREAIERLILLTGLEKAEVVEAYFACDKDEQLTASYLFER 118
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 63/226 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ T EI V D +SD+KK IE V P +Q LI G +L +
Sbjct: 1 MKIKVRTLQNTEEEINVDSNDTISDLKKKIENVFPE--MPCDKQKLIFSGNIL-----MN 53
Query: 61 ENKVA----ENSFVVVMLTKSKVSSSGASTV--------SAAPANQAQTTSSAPPTS-TQ 107
E+KV EN V+VM+T+ ++S ++ S + N+ + S T+
Sbjct: 54 EHKVVDILKENDIVIVMVTRKIITSKKNNSTKNANELASSDSLKNKDEKNSDDKNNDKTK 113
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLV 167
T T + ++ P+S+ L+
Sbjct: 114 NTDTENKESENISNPESI----------------------------------------LL 133
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G
Sbjct: 134 TGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNG 176
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 13/128 (10%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEPVEGG--EGNVL- 369
F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL L N + E +++
Sbjct: 238 FNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDTDNNNSENDLIP 297
Query: 370 --------GQLASAMPQAVTVTPE-EREAIERLEAMGFDRALVLEVFFACNKNEELAANY 420
Q +T E E E++ +LE++GF + + LE F AC+KNEE+AANY
Sbjct: 298 NYEYTDETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAANY 357
Query: 421 LLDHMHEF 428
L ++M+++
Sbjct: 358 LFENMNDY 365
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 61 ENKVAENSFVVVMLTKSKV------SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
+ V +N +V+ K K+ ++ T AAP + A +S+ PP + P T+ +
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMSAPALTTTS 115
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
PA + AP + P AA PA AP +S ++ YG A NL+
Sbjct: 116 PATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYG-VAPNLI------- 167
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ MG DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 168 --DEVASMG--FEDRSQIALALRAAFMNVERAVEYLFEGIP 204
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
FQ ++ NP +LQP++Q+L + NP + + + + +++ + +
Sbjct: 312 FQNTLGAIRENPALLQPLIQQLAQSNPAIAQQLTSNPELLYQILGGLGGDDQDDDGDGEG 371
Query: 374 SAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
+P + +T EE EAI RLEA+GF R L +E +F C+KNEELAANYL +++
Sbjct: 372 GGIPPGAHVINITQEEAEAIARLEALGFPRQLAIEAYFTCDKNEELAANYLFENV 426
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIEVKP D KNIETV G+ YPA+QQ+LIH+GK L+D T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 E 61
E
Sbjct: 56 E 56
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M+ K K + S+
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S A + P+ A G ++A N+EA
Sbjct: 118 XXXXAPRSTGGGDAASNDPSMA----------------MGAQRQEVIA--NMEA------ 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 154 -MG---FERSQIDAAMRAAFYNPDRAVEYLLNGIPE 185
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
++ DVK NIE +Q D YP QQ+LIH GKVLKD TTL +N+V+E+ F+VVML+K S
Sbjct: 76 EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRS 135
Query: 82 SGA 84
G
Sbjct: 136 MGG 138
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 74.7 bits (182), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 14/110 (12%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
+F +R +++ NP++L+ +L L + +P I+ +Q +F+ ++NEP ++ G L
Sbjct: 187 RFAHVRDLIRQNPELLELVLTHLRESDPAAFEAIRSNQEEFISMLNEPT----AHLTGSL 242
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ EE A+ERL A+GFDR +VL ++ AC+KNEEL A+ L
Sbjct: 243 SH----------EEEAAVERLMALGFDRDVVLPIYLACDKNEELTADILF 282
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 67/216 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-YPASQQMLIHQGKVLKDVTTL 59
MK+ ++TL +E++ +DK ++ VQ ++ P LI+ G++++D L
Sbjct: 1 MKLSIRTLDQKTISLELQ-DDKQKVIQLKQRLVQLPEITQPVESLQLIYGGRIMQDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E+ F+V+M +S AN V
Sbjct: 60 ADYNIKEDRFIVLMTKRS--------------AN-------------------------V 80
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P+S P P PA P P+ P E V+ +
Sbjct: 81 QEPESEPRQEHHPEQIV-QPAEPPRPSVTPD----------------------EQRVRDL 117
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ MG ++ + V AL A++N+PERA+EYL +GIP
Sbjct: 118 MLMG---YEEQDVRAALSASFNHPERAIEYLITGIP 150
>gi|158430391|pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
gi|158430393|pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
gi|158430397|pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 24/133 (18%)
Query: 316 ALRTMVQANPQILQPMLQELGKQNPHL---------------MRLIQEHQTDFLRLINEP 360
+LR +V NP+ L P+L+ + + P L + + ++ D + ++
Sbjct: 37 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 96
Query: 361 VEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 412
VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+FAC+K
Sbjct: 97 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 156
Query: 413 NEELAANYLL-DH 424
NEE AAN L DH
Sbjct: 157 NEEAAANILFSDH 169
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA 84
E K+ E +FVVVM+TK K S+ A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPA 84
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KTL+ T F+IE+ P V +K+ IE +G D YPA Q LI+ GK+L DV+ L
Sbjct: 1 MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIEKEKGVD-YPAVGQKLIYAGKILDDVSVLS 59
Query: 61 ENKVAENSFVVVMLTKSKVS 80
E+ + E F+V+M+TK K S
Sbjct: 60 EHGIDEKKFIVIMVTKPKAS 79
>gi|380476277|emb|CCF44800.1| hypothetical protein CH063_14080, partial [Colletotrichum
higginsianum]
Length = 94
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 334 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAI 390
+LG NP L +LI + FL+L+ E V+ +P QA+ VT EER+AI
Sbjct: 1 QLGAGNPQLAQLIANNPDQFLQLLGEEVDDD---------VPLPPGAQAIQVTEEERDAI 51
Query: 391 ERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
ERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 52 ERLCRLGFDRDAAIQAYFACDKNEELAANFLF 83
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F ++ + D VS VK+ IE +Q +P +QQ LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIEGLQN---FPVAQQKLIHAGKVLKDDSTLA 57
Query: 61 ENKVAENSFVVVMLT 75
E V EN F+VVM+T
Sbjct: 58 EYNVKENDFLVVMVT 72
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361
QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+
Sbjct: 236 QFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 284
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ +T EE A++RL MGF+R V++ + AC+KNE LAAN+L+
Sbjct: 387 IMLTEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLM 429
>gi|349604998|gb|AEQ00385.1| UV excision repair protein RAD23-like protein B-like protein,
partial [Equus caballus]
Length = 94
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 346 IQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIERLEAM 396
I +HQ F++++NEPV+ G + + S + VTP+E+EAIERL+A+
Sbjct: 2 ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKAL 61
Query: 397 GFDRALVLEVFFACNKNEELAANYLL 422
GF LV++ +FAC KNE LAAN+LL
Sbjct: 62 GFPEGLVIQAYFACEKNENLAANFLL 87
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
+F LR M+ NP L+ +L ++ NP + ++ H +F+ L+N + + + Q
Sbjct: 198 RFAQLREMILQNPDQLEAILGQMSGSNPEVFEGLRNHHGEFVDLLNYDLSLSDDDEFPQQ 257
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
A + Q +T E A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 258 ADS-AQQTPLTAAEAAAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 311
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 49/219 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL +E+ V +KK + ++ G S Q LI+ G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDELPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+AE+ F+V+M K KV + P +T S+A T T T + T A + A
Sbjct: 60 EYKIAEDKFLVLM-GKQKVQQVTKVELEKKP---KETASAA--TGTGSTPSGDTGAESYA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S+ P E VQ+++
Sbjct: 114 TGGGNPTSSVAPN---------------------------------------EEMVQRLM 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
MG ++ V AL A++N+PE A+EYL + IP + A
Sbjct: 135 GMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSEAA 170
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 11/108 (10%)
Query: 325 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVT 381
P +L+P+LQ++ NP + +I ++ FL+L+ L A+P QA++
Sbjct: 280 PHMLEPILQQVAAGNPQIASIIGQNSDQFLQLLG--------EELEDEEGALPPGAQAIS 331
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429
VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E E
Sbjct: 332 VTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFDQPDEDE 379
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 71/117 (60%), Gaps = 11/117 (9%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-- 371
F+ +R +++ +P +L +++ + NP L+ +I E+Q +FL LINE G G GQ
Sbjct: 269 FEDMRRILRDDPSMLPYLMRRMQASNPDLLNIIAEYQDEFLALINEGSNAG-GQPAGQPM 327
Query: 372 ------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+A+AM ++TP + +AIERL+A+G+ LV++ + AC ++E AA +L+
Sbjct: 328 SRELESIAAAMVN--SLTPSDMDAIERLKALGYPEHLVIQAYIACERDEYDAAMFLV 382
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ + G YP +Q LI+ GK+++D L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 EENKVAENSFVVVMLTK---------SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
+ K+ + F+VVM K K S G A + + T ++++P+T
Sbjct: 60 SQYKLDDKKFIVVMSKKPPADEPAPEQKESGDGKPADKDTAAGRVEGTGEPATSASKPST 119
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 58/168 (34%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---------- 362
QF +LR +VQ+NP LQ +L ++G+Q P L++ I +Q +FL ++NEPV
Sbjct: 311 QFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGGGADA 370
Query: 363 ------------------------GGEGNVLGQLASAMP--------------------- 377
G G+ G +A+
Sbjct: 371 GGADAGHDGADDGRRRRAAPGHRAGHRGHAAGATRTALTDGRRGHGAGGMPPGMMGGGGE 430
Query: 378 ---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
Q + ++ EE A+ RL MGFDR + + AC+KNE LAAN L+
Sbjct: 431 GGPQVLRLSEEEMAAVNRLTEMGFDRTEAAQAYLACDKNEALAANLLM 478
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 50/124 (40%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNI-----------ETVQGSDV----------- 38
+ + VKTLKG F IEV P + V++VK I E V G+ +
Sbjct: 2 INLTVKTLKGGKFTIEVDPSNSVAEVKAVIRGGGDHAHDPEEVVAGNFLNSSWRSSNSKI 61
Query: 39 ----------------------------YPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70
PA+ LIH GKVLKD +E + N F+
Sbjct: 62 QTGLNSEMRLAPTRSHALLFRQENTKSELPAAGMKLIHSGKVLKDDEKIESCNIKPNDFL 121
Query: 71 VVML 74
VVM+
Sbjct: 122 VVMI 125
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPVPAAVQA 54
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPIPAAVQA 54
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K PT +++ A A
Sbjct: 58 SYNIEEKGFVVCMVNKPK-----------------------------PTKPAESSAAPPA 88
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P A A A PA P P S +D + S L GS + +
Sbjct: 89 TPAAPPTRTPAAPAAPAQSASQQAAVPATPTPQRS-ADAGSEEPSGLAMGSQRTEAIANM 147
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 148 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPD 181
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPP 103
++ E +FVVVM+TK+K S + A+P ++++S PP
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPP 122
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 84/266 (31%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ + L++G + ++Q++ MG + RE + A++AA+NNP+RAVEYL +GIP
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P A ++G Q Q PAA P G PN
Sbjct: 181 PPAPVASG----------QGQPPAAQQPV-------------GQPN-------------- 203
Query: 282 NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQ--- 338
Q Q LR + Q NPQ + +L +L +Q
Sbjct: 204 -------------------------------QIQQLRQLYQQNPQAVLQLLPQLLQQIQQ 232
Query: 339 -NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 397
NP L + ++ L+++ GQ P ++ +T +E + IE + +G
Sbjct: 233 TNPELHAQVSQNPEMLLQMLMG---------AGQQQGPPPGSIQLTQQEFKDIETIMQLG 283
Query: 398 FDRALVLEVFFACNKNEELAANYLLD 423
F + LE + AC+KN E+A NYL +
Sbjct: 284 FTKQDSLEGYIACDKNVEMAINYLFE 309
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 41/155 (26%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN------EPVEGGEGN 367
+ LR +VQ +P +L ++ E+ + NP++ RLIQE+Q F++L+N EP++
Sbjct: 359 IKQLRLVVQRDPTMLHDVIMEIERANPNITRLIQENQEAFVQLLNERVDQNEPMKQEVQK 418
Query: 368 VLGQLASAMPQA--------------------------------VTVTPEEREAIER--- 392
Q Q + +T EER+A++R
Sbjct: 419 QQQQPQQQQQQQQQQPQQQRRRQQQQQQHQQQEQSTSSGTRIFRIHLTAEERDAVDRCQA 478
Query: 393 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
L AMGF + V+E +FAC+KNE LAAN+LL + E
Sbjct: 479 LVAMGFSESQVIEAYFACDKNEALAANFLLQSLEE 513
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 14/225 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++V +K L+ F +E++P + D+K+ IE+ QG + + Q +I GKVL D T+
Sbjct: 31 VRVTLKNLQQKTFTLELEPSQTILDLKQKIESDQG---HAVALQKIIFSGKVLADDKTIG 87
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F +V++ +S+ + + A+ ++SAP + P T + A
Sbjct: 88 DCNIKEKDF-MVLMVNKPKASAAPAVANLPAASAPAASASAPAPTATPATATPASAAAPE 146
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ P A A A A + AP +S + + G+ LEA++ +++
Sbjct: 147 PTAAASTASAPATPAATASADATTASAETAPAASDD------PTAFLTGARLEASIAEMV 200
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVA 224
MG + RE RA+RA+YNNP RAVEYL +GIP E PP A
Sbjct: 201 SMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRA 242
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ P+ V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQ 94
+ K+ E +FVVVM++K+K S++ AST S+ NQ
Sbjct: 61 DYKIDEKNFVVVMVSKAK-STTAASTPSSEAPNQ 93
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
Q +R+M+Q NP++L +LQ+L NP L++ IQ +Q F+ ++N G G Q
Sbjct: 205 QLAEIRSMIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILN-----GAGQNAPQG 259
Query: 373 ASAMP------------QAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAAN 419
+ ++PEE AIER++A+ A+V+E +FAC+KNEE A N
Sbjct: 260 GGGAGAGAAAGERGPRRHVIHLSPEEAAAIERIKAIVNAPEAMVVEAYFACDKNEEAAIN 319
Query: 420 YLLDHMHE 427
++ + E
Sbjct: 320 FIFSSLDE 327
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +TL +F +E+ + +++VKK + T +G D P Q+ LI+ GK+L D T + +
Sbjct: 5 VAFRTLTQINFSLELNEDQTIAEVKKLVATEKGDDYAPELQK-LIYNGKILDDATKVADV 63
Query: 63 KVAENSFVVVMLTKSKVSSS 82
+ FVVVMLTK K + +
Sbjct: 64 GFDSSKFVVVMLTKKKAAET 83
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 69.7 bits (169), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 133 AAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 192
+AP+ A P A + YG+A SNL+AGS LE T+QQI D+G R+ V
Sbjct: 36 SAPSKKAIRPKARHPQGAASRMLLGTYGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIV 93
Query: 193 IRALRAAYNNPERAVEYLY 211
IRAL AAYNNPER VEYLY
Sbjct: 94 IRALSAAYNNPERTVEYLY 112
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 37/196 (18%)
Query: 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
++ +P D V +K IE G +P + Q +I+ GK+L D T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 75 TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA 134
+K K P A T+S+ P + + + T +
Sbjct: 58 SKPK------------PTPAATTSSTPAPATPVAAPPTSESSSTTTTAPPPAAAPVSSTE 105
Query: 135 PAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIR 194
PA A +G +S ++GS L+ T+ +++MG + ++ V+R
Sbjct: 106 PAQQRA------------------FGDTSS-FLSGSALQDTINNMVEMG---FPKDQVLR 143
Query: 195 ALRAAYNNPERAVEYL 210
ALRA++NNP+RAVEYL
Sbjct: 144 ALRASFNNPDRAVEYL 159
>gi|167375270|ref|XP_001739824.1| UV excision repair protein rad23 [Entamoeba dispar SAW760]
gi|165896371|gb|EDR23800.1| UV excision repair protein rad23, putative [Entamoeba dispar
SAW760]
Length = 315
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 320 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG----EGNVLGQLASA 375
+ + PQI++P LQ + +NP L +L++ + +I E + Q +
Sbjct: 205 LCREQPQIIEPFLQHIESENPQLAQLMRNNPGMVYDIIKGQTNNNRVPSESQPIPQQPNH 264
Query: 376 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
P ++PE+ AI+RL A+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 265 APSQPQLSPEDNAAIDRLCALGFGRSQCLQAYIACDKNEQLAANFLLD 312
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 48/216 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LKD T
Sbjct: 1 MKIIVKTIQGVLNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + E +V+++ KS V + + V+ P N T P +TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPAPKPAPVT-QPENHP--TEPVPQVTTQPITTNQ----- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P+ PV D++ V E +
Sbjct: 110 ----------------------------PSTQPV----DIFQPQQRQQVNVEPTEENINH 137
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
+++MG + R+ I+ALR + NN A ++L SG+
Sbjct: 138 LVEMG---FLRDDAIKALRKSQNNTAIAADFLISGV 170
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 114/280 (40%), Gaps = 80/280 (28%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
+ TVQQ L+MG +DR + ++A++ + A E+L SGIPE V + + + G
Sbjct: 153 DETVQQFLEMG---YDRNDIDECMKASFYDRATAAEFLISGIPEN--VKQMMQENGGN-- 205
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYL 292
P P PQG GS A A N Q S+
Sbjct: 206 -------------LPTP------------PQG----GSLASA----LAGNQQGFSLR--- 229
Query: 293 FASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 352
D+F S Q LR ++ NP +L+ L + + +P L ++IQ + +
Sbjct: 230 --------DLFTLSP-----QLNNLRNAIRQNPTLLREFLTHVSQVSPELYQIIQSNPRE 276
Query: 353 FLRLINEPVEGG---------------------EGNVLGQLASAMPQAVTVTPEEREAIE 391
FL +INE G L Q A P + ++ ++ I
Sbjct: 277 FLEIINETGPVTGTTGTQPQTTPTTTTGGEHPPSGEELQQ--QAPPGTIFISQDDERKIN 334
Query: 392 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE-FED 430
L +GF + ++ + AC+KN+E+AAN L ++ FED
Sbjct: 335 ELVGLGFTKNEAIQAYLACDKNQEMAANLLFENRDRGFED 374
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 46/174 (26%)
Query: 43 QQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
Q LI+ GKVL+D +L+E+ + + V+ M++ + + Q+ ++
Sbjct: 41 QIKLIYSGKVLQDSKSLQESGLKDGDQVIFMIS--------KKKSTTTTVTEPQSKETSA 92
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQA 162
P S P S+TPA A Q S P
Sbjct: 93 PVSQSPAPQSETPA---AETQQEASSTTDPG----------------------------- 120
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
V G+ V++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 121 ---FVVGAQRNEAVERIMEMG---YEREQVDRALRAAFNNPDRAVEYLLMGIPE 168
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 126/278 (45%), Gaps = 54/278 (19%)
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-ATVQQILD 181
Q+V E AP + + APA A AP P P + + + S++ A ++ A + I
Sbjct: 18 QNVKE-APHVSEGSEAPATASAPTPGEQPSAETAAAAPRTGSSVAATQGVDPALIDSIAA 76
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG DR+ + ALRAAY NP+RAVE+L++GIP V R A Q P T
Sbjct: 77 MG--FEDRDQIALALRAAYMNPDRAVEFLFTGIPSH-----VQRELAESQLRAVPGNTSV 129
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICD 301
+ G +A PQ S G T LF +L+ +
Sbjct: 130 --------SGGVDAT----HPQ------SGRGGDTES-------------LFNALMAVP- 157
Query: 302 VFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEP 360
Q + +R++V++NPQ L ++Q+L ++ P + +L+Q+ +F+R ++ +
Sbjct: 158 -----------QMEEIRSIVRSNPQALGTVIQQLQERFPQIAQLVQQDPEEFMRFMVGDA 206
Query: 361 VEGGEGNVLGQLASAMPQAV-TVTPEEREAIERLEAMG 397
V V A+ +A+ + EER A+ RL +G
Sbjct: 207 VTADTEAVSDGGAALASEAIPPLREEERAAVNRLVVLG 244
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 145/368 (39%), Gaps = 86/368 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +K + G E EV E V D+KK +E D Y + + +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + +V + K + + +T A ++ SA S Q S +
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTMSTATDVATKPSEGSARVSASSQSGQVNVESVPQSTATE 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQSV + PP+A + P ++ G + A + ++
Sbjct: 116 VPQSVAHN--PPSASSTETNP------------------------MLRGVD-PALIDTVV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG DR V ALRAAY N +RAVE+L SGIP + P
Sbjct: 149 SMG--FEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVE-----------RDLGPVFHDD 195
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFIC 300
+Q P P+S A P + G+G+ L +L+ +
Sbjct: 196 SQHGMFPIPSSMAPAAPTE-------------GSGS--------------ALEQALMAVP 228
Query: 301 DVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+F+ +R +V+ANPQ + +Q+L P + RL+Q++ +F ++
Sbjct: 229 ------------RFEEIREIVRANPQAIASAVQQLQLHYPDIARLVQQNPQEFATIMLR- 275
Query: 361 VEGGEGNV 368
G G+V
Sbjct: 276 -HGAAGHV 282
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 12/96 (12%)
Query: 327 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 383
+L+P+LQ L NP L +I + FL L++E G + +P ++VT
Sbjct: 275 MLEPILQTLSASNPQLAHVIATNPDQFLELLSET---------GDDDAPLPPGAHQISVT 325
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 419
EER+AIERL +GF + ++ +FAC+KNEELAAN
Sbjct: 326 EEERDAIERLVRLGFTQDQAIQAYFACDKNEELAAN 361
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus
siliculosus]
Length = 466
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ VKT+KG F+IEV+ V +VK IE +PA+Q LIH G++LKD TL
Sbjct: 2 VKLTVKTIKGKKFQIEVEQTQTVREVKGVIEEQNAE--FPAAQLKLIHSGQILKDECTLA 59
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E F+V M+TK
Sbjct: 60 EYKIKEEEFLVCMVTK 75
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 308 FRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361
FR QF L+ +VQ +P L +LQ +G+Q+P+L+ I E+Q DF+ L+NEP+
Sbjct: 181 FRGHPQFNELKRLVQRDPTQLSSILQMIGRQSPNLLARIHENQGDFIALMNEPI 234
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
+ ++ EE A+ RL +GF+R + + AC+KNE LAAN+LL+ M
Sbjct: 342 IRLSEEEGAAVARLTELGFERTDAAQAYLACDKNEALAANFLLNDM 387
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
V+Q+ +MG + + V ALRAA NP+ AVE+L +GIP+
Sbjct: 119 VRQLTEMG---FPEDQVTAALRAAMGNPDVAVEFLMTGIPD 156
>gi|195609762|gb|ACG26711.1| hypothetical protein [Zea mays]
Length = 38
Score = 67.0 bits (162), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 396 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 1 MGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 35
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 376
+R M+ NP+++ ++ L + +P + Q +Q + + +I+ GG ++
Sbjct: 184 MREMINQNPELIHRLMNRLAETDPATFEVFQRNQEELMNMIS----GGASRTPNEIEHL- 238
Query: 377 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+T+T EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 239 --QITLTAEETAAVGRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEEDRD 290
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 95/242 (39%), Gaps = 71/242 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ +V +K+ + + PA LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEV-AMPAENLQLIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E ++AE+ +V+M K KV S +P VA
Sbjct: 60 EYRIAEDKIIVLM-GKKKVDKS-------------------------------SPEEKVA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PP A P P+ AP +D + V ++
Sbjct: 88 PT--------PPLAAGPNVLRTEDVVPSLAP----NDQW----------------VSDLM 119
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG G E V ALRA++N+PERA+EYL +GIP++ S G A P QT
Sbjct: 120 SMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEV-------VSEQGLAAIPSVQTS 169
Query: 241 AQ 242
Q
Sbjct: 170 DQ 171
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--VEGGEGNVLG 370
+F +R M+ NP L+ +L ++ NP + ++ H +F+ L+N V +
Sbjct: 198 RFAQVREMILQNPDQLEAILGQMSGSNPEVFEALRNHHGEFVDLLNYDLSVLSDDDEFPQ 257
Query: 371 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
Q SA Q +T E A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 258 QADSA--QQTPLTAAEAAAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 312
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 88/219 (40%), Gaps = 49/219 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL +E+ V +KK + ++ G S Q LI+ G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDGLPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+AE+ F +VM+ K KV + P A T T+ T A T A
Sbjct: 60 EYKIAEDKF-LVMMGKQKVQQVTKVELEKKPKETASAA-----TGAGSATSGDTGAETYA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S+ P E VQ+++
Sbjct: 114 TGGGNPTSSVAPN---------------------------------------EEMVQRLM 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
MG ++ V AL A++N+PE A+EYL + IP + A
Sbjct: 135 GMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSEAA 170
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + +V ++ V+++K + +Q + AS Q LI+ GKVL++ L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+V M+ K K +T ++ P + QP TT
Sbjct: 58 TYNITENGFLVCMVKKPK----------------EETVATTAP-AVQPATT--------- 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA P PAP P + S S+ + G EA + ++
Sbjct: 92 -----PVAPTSAPSTTPASTSTPTNTPAPTPSPASSTSPSGGNSSFIVGPEYEAAITNLM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+M G +RE VIRALRA++NN ERA + L SG
Sbjct: 147 EMSGA--NREMVIRALRASFNNAERAADILLSG 177
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
QFQ + +++ NPQ++ P+LQEL + NP L +L+Q + FL I + + +
Sbjct: 204 QFQQIVQVIRQNPQLILPILQELSQTNPQLAQLLQSNPQAFLSYILQQEDQQD------- 256
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+ A+ + +E +E + +GFD+ LE + AC+K +ELA NYL D
Sbjct: 257 DNDESNAIQLNNQESNDVEEIIMLGFDKNDALEAYIACDKQKELAINYLFDQ 308
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 88/215 (40%), Gaps = 50/215 (23%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK-DVTT 58
MK+ +KTLKG FEI + E +S +K I +G + L+H+GK L D
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+E + EN F+++M+ T Q Q PA
Sbjct: 59 CQELGIKENDFLIMMVF----------------------------TKKQGQIPKQQPAEI 90
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
Q+ PP A P P +S Q+ N S E V+
Sbjct: 91 QNEQQT---QINPPVQSDSAQNHLQKP---PCQISQ-----QQSTEN----SEFEQKVKD 135
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
I MG +++ +I+AL+AA+NN ERA+EYL +G
Sbjct: 136 IEAMG---FEKSKIIQALQAAFNNQERAIEYLLNG 167
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 104/225 (46%), Gaps = 27/225 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP----------TT 110
+ + +N +V+ K K+ A + +A SSAP +S P TT
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPESSAPASSATPPPAMSTPVLATT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
+ T A V PP +A A A APA AP +SV++ YG A NL
Sbjct: 116 SPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYG-VAPNL---- 170
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ ++ M G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 171 -----IDEVASM--GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
ES P A AP+ + AP+ A + S Q S L + VQQ++++GGG
Sbjct: 316 ESGQPGTASAPSGSAAPSTGQAVVGDAEGSSFMNQLQSGLELTAEDRTAVQQLVELGGGM 375
Query: 187 WDRETVIRALRAAYNNPERAVEYLY--SGIP 215
WD ++ + A N E A L+ G+P
Sbjct: 376 WDEQSAVLVYLATQRNQEVAASVLFEHGGVP 406
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA- 224
+ G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE A PP A
Sbjct: 158 FLTGGALESAMQSMMEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLANPPAAP 214
Query: 225 ------RASAGGQ 231
ASAG Q
Sbjct: 215 QPSSTGAASAGEQ 227
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 324 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 383
NP LQP++Q + + NP L + H + + G+ + +P ++
Sbjct: 334 NPAALQPLVQAIAQSNPQLAEAMN-HDPQGVLALLAGGAAAGGDEM-----ELPTLAELS 387
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
++R +E++ AMG + +E +F C KN E+A Y ++ +FED
Sbjct: 388 DDDRAGVEQIVAMGIPESKAIESYFMCGKNVEMAVQYYFENPQDFED 434
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 38/244 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL F IE + D V +K+ I D Y A LI GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +SF+VV+ +G++ +AAP+N + S+ T T T T AP
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNPSGAASAQTRTPTVATPTPAPAAPQQQ 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PAPA PA + S ++ + E ++++
Sbjct: 121 PTR---------------PAPASGTTPAASQDS------------FLSAESREKALRELT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG---GQAGNPPA 237
DMG +DR ALRA++ + ERA EYL +G +P ++ SA G +G P+
Sbjct: 154 DMG---FDRAQAELALRASFYHVERAAEYLITG-----NIPNISEPSAANPEGGSGQTPS 205
Query: 238 QTQA 241
+++
Sbjct: 206 GSES 209
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 52/215 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G FE+EV+P D V ++K+ IE V+ + +QQ L+ +G +L D T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQ---FEIAQQKLLRKGTLLVDDQTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K A Q P +
Sbjct: 58 DLGIQEKDFLVVMVNVKKGPPQQQPVQQQAQQPPQQPQPVQPQQPIE------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P P + + + S+ Y QA NL+
Sbjct: 105 -------------------VPKPLNNPTTSNMVTGSE-YDQAIQNLIQ------------ 132
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG + E A++AA+NN RA+EYL +G+P
Sbjct: 133 -MGFAKSECEA---AMKAAFNNQNRAIEYLLNGLP 163
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
Q LR NPQ + +Q+L + NP L + IQ++ ++L+ +G EG+
Sbjct: 184 LQLLREQFMQNPQAVLQSIQQLQQTNPQLYQQIQQNPETLIQLLMGAGQG-EGDE----- 237
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424
+T EE + + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 238 ----IETEITQEEEQQLNQLMMMGFSKEDALEGFLACDKNVETAASYLFEK 284
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLAS 374
+R M+ NP+++ ++ L + +P + +Q DFL +I+ GG N +G L
Sbjct: 184 MREMLNQNPELMHRLMDRLAETDPATYEALGRNQ-DFLNMIS----GGARRTNEVGHLE- 237
Query: 375 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+T+T EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 238 -----ITLTAEEAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 66/220 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLKDVTTL 59
MK+ ++ L + +E+ +V +K+ + V A++ + LI+ G++++D L
Sbjct: 1 MKLSIRMLDQSSITLEMDESQEVRALKQRLGN--SPKVAMAAENLQLIYNGRIMEDAMPL 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E ++AE+ +V+M K + S P+ Q V
Sbjct: 59 SEYRIAEDKIIVLMGKKKVIES---------------------PSEEQ-----------V 86
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP PP A P AP+ AP +D + V +
Sbjct: 87 APT--------PPLAAGPTVLRTEDVAPSLAP----NDQW----------------VNDL 118
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+ MG G E V ALRA++N+PERA+EYL +GIP++ A
Sbjct: 119 MSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA 155
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLAS 374
+R M+ NP+++ ++ L + +P + +Q DFL +I+ GG N +G L
Sbjct: 184 MREMLNQNPELMHRLMDRLAETDPATFEALGSNQ-DFLNMIS----GGARRTNEVGHLE- 237
Query: 375 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+T+T EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 238 -----ITLTAEEAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 66/220 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLKDVTTL 59
MK+ ++ L +E+ +V +K+ + + +V A++ + LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMDESQEVRALKQRLG--KSPEVAMAAENLQLIYNGRIMEDAMPL 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E ++AE+ +V+M K + S PP + APT
Sbjct: 59 SEYRIAEDKIIVLMGKKRVIES--------------------PP--------EEQVAPT- 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP A P AP+ AP +D + V +
Sbjct: 90 -----------PPLAAGPTVLRTEDVAPSLAP----NDQW----------------VNDL 118
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+ MG G E V ALRA++N+PERA+EYL +GIP++ A
Sbjct: 119 MSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA 155
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 372
+F R ++ +P+ L+ +L+ +G+ +P + E + G N
Sbjct: 181 RFIQFRDAIRDHPEALEGLLRRIGESDPETL---------------EAIRNGIQNGFEDD 225
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
+ V++TPEE A+ERL ++GF R +VL+V+ AC+KNEELAA+ L E
Sbjct: 226 GGSESIQVSLTPEELAAVERLISLGFQREMVLQVYLACDKNEELAADILFRESEE 280
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 63/215 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L F +E+ V +KK++ + + A Q LI+ G++++D L
Sbjct: 1 MKLLIRSLDQKSFNVEMNVSQSVLALKKHLAGIPEISL-SAEQLQLIYAGRIMEDTQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + ++VM+ K+K P + + PT
Sbjct: 60 EYNIQDGK-IIVMMGKNK------------------------PVQVETPVKEELVPPT-- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + S P P+ AP E V++++
Sbjct: 93 PPLTAQSSQQEPRRPSQAPN--------------------------------EDRVRELV 120
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG ++ E V ALRA++N+PERA+EYL +G+P
Sbjct: 121 SMG---YEEEEVRAALRASFNHPERAIEYLINGLP 152
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 96/224 (42%), Gaps = 48/224 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VK++K FE+E V +K+ I + SD Q LI G++LKD LE
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN F+VVM G ++ PA + T+S + + +TPA +
Sbjct: 61 SLNFKENDFLVVM--------GGKRPAASKPAADKKDTAS--------SKSEETPASS-- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + + AP+ P +S E ++ +
Sbjct: 103 -------STTEPKPASTTTSSSTPAAPSSGPAAS------------------EESLNTLT 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
MG +DR RAL AA+ N ERAVEYL +GIP T+ P A
Sbjct: 138 AMG---FDRAQAERALSAAFGNIERAVEYLQNGIP--TSAQPAA 176
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+LV G+ L+ +VQ +++MG ++RE V+RAL+A++NNP+RAVEYL++GIP
Sbjct: 128 DLVTGAALQTSVQNMIEMG---FEREQVLRALKASFNNPDRAVEYLFNGIP 175
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSA 89
+ E F+V M++K K + S ++ VS+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAGVSS 86
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ V G L TV+ +++MG ++RE V+RALRA+YNNP+RAVEYL++GIP
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIP 183
>gi|402580657|gb|EJW74606.1| hypothetical protein WUBG_14486, partial [Wuchereria bancrofti]
Length = 80
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 379 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427
A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 30 AIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 78
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I++ PE+ V + + IE+ +G D +P + Q LI+ GK+L D T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILND-DTVKEY 113
Query: 63 KVAENSFVVVMLTKSKVSSSGA 84
K+ E +FVV M+TK K ++ A
Sbjct: 114 KIDEKNFVVFMVTKPKAVTTPA 135
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 100/251 (39%), Gaps = 75/251 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK + D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V +N F+V+ K K+ ++ P+ + Q T +AP S AP A
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPKP-----ASMPSAEPQKTEAAPEFS----------APLSA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP--------------------------------- 147
+APPPA P A
Sbjct: 101 -------TAPPPAMPTSASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTP 153
Query: 148 ---APAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPE 204
+ PV+S + +YG A NL + ++ M G DR + ALRAA+ N +
Sbjct: 154 PAGSAIPVASAASIYG-VAPNL---------IDEVAAM--GFEDRNQIALALRAAFMNVD 201
Query: 205 RAVEYLYSGIP 215
RAVEYL+ GIP
Sbjct: 202 RAVEYLFDGIP 212
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 9/75 (12%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
+ + + G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE PP
Sbjct: 170 SGSFLTGGALESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLVNPP 226
Query: 223 ------VARASAGGQ 231
AR S+ GQ
Sbjct: 227 AAAAEAAARTSSEGQ 241
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 324 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 383
NP LQP++ + + NP L + H + + ++ +P +
Sbjct: 348 NPAALQPLVHAIAQSNPQLAEAMN-HDPQGVLALLAGGAAAADDI------DLPTLAELD 400
Query: 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+R +++++ AMG A +E +F C KN E+A Y ++ +F+D
Sbjct: 401 EPDRASVQQIVAMGIPEAKAIECYFMCGKNVEMAVQYYFENPQDFDD 447
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
F +R + +PQ Q + +L + P L LIQ++ F+ LI G+ N
Sbjct: 224 FALIRQRILQDPQFYQQFMSQLQQTQPQLFALIQQNPAAFMNLI----LAGDPNAGLAGM 279
Query: 374 SAMPQ----------------AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
+ ++ VT +E EAI RL ++GF + E +FAC+KNEELA
Sbjct: 280 AGAGAGAGHAHGGAGGANPPGSIRVTQDEMEAINRLTSLGFPKHKAAEAYFACDKNEELA 339
Query: 418 ANYLLDHMHEFED 430
ANYL + E E+
Sbjct: 340 ANYLFETGFEDEE 352
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 189 RETVIRALRAAYNNPERAVEYLYSGI 214
R+ I ALRAA+NNP+RA EYL SG+
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGV 172
>gi|109126538|ref|XP_001116344.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Macaca
mulatta]
Length = 53
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 37/43 (86%)
Query: 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 4 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 46
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 62.8 bits (151), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65
Query: 61 ENKVAENSFVVVMLTKSK 78
+ ++ E +FVVVM+TK+K
Sbjct: 66 DYRIDEKNFVVVMVTKTK 83
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 23/122 (18%)
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----------NEPVEGGE 365
+R M++ NP+++Q +++ L + +P +Q Q F+ ++ + P EG
Sbjct: 184 MREMIRENPELMQLIMERLAETDPAAFEAVQHDQEGFMSMLSGAAGSAGGASHNPDEGEH 243
Query: 366 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425
V ++ EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L
Sbjct: 244 FQV------------ALSAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLFRES 291
Query: 426 HE 427
E
Sbjct: 292 EE 293
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 64/219 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ + V +K+ + ++ + P + Q LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNETEDVRTLKQRLSSLSEVALPPENVQ-LIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E ++AE +V+M G V P P V+
Sbjct: 60 EYRIAEGRIIVLM---------GKKKVDERP-----------------------PVEQVS 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP +P A P DV ASN E V++++
Sbjct: 88 PP------SPLAAGPI---------------AMRTQDVTPSIASN-------EQLVRELM 119
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
MG G D V ALRA++N+PERA+EYL +GIP++ +
Sbjct: 120 SMGYGEQD---VRSALRASFNHPERAIEYLINGIPQEAS 155
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTK 76
++ E +FVVVM+TK
Sbjct: 65 RIDEKNFVVVMVTK 78
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
S+ + G+ L++++Q +++MG + R+ V+RA+RA+YNNP+RAVEYL +GIPE
Sbjct: 136 SSFLTGNALQSSIQNMVEMG---FPRDQVLRAMRASYNNPDRAVEYLMTGIPEH 186
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVK L G H +EV+P D++ DVK+ I+ +G P +Q LI GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 61 ENKVAENSFVVVM 73
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 317 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-------L 369
+R M++ NP+++Q +L+ L +P + Q + ++ V G G+
Sbjct: 182 VREMIRENPELMQLILERLADTDPAAFEDVHRDQEGLMTMLA-GVAGSVGDANHNHNPDE 240
Query: 370 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422
G+L V +T EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L+
Sbjct: 241 GELLQ-----VALTAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLI 288
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 83/222 (37%), Gaps = 72/222 (32%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK---NIETVQGSDVYPASQQMLIHQGKVLKDVT 57
MK+ ++ L +E+ V +K+ N+ V PA LI+ G++++D
Sbjct: 1 MKLSIRMLDQHTITLEMNESQDVKTLKQILGNLPEVS----LPAENVQLIYSGRIMEDAM 56
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
L E +AE +V+M K + S P PT
Sbjct: 57 PLSEYNIAEGRIIVLMGKK-------------------KADVSLPEEQVSPT-------- 89
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+P +A P P+ AP E V
Sbjct: 90 -------IPLAAEPMRTQDVTPSMAPN----------------------------EQWVC 114
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
++ MG G + V ALRA++N+PERA+EYL +GIP++ +
Sbjct: 115 DLMSMGYGEQE---VRSALRASFNHPERAIEYLINGIPQEAS 153
>gi|123504409|ref|XP_001328742.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121911689|gb|EAY16519.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 310
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 155/424 (36%), Gaps = 122/424 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + G E+EV + ++DVKK I V+ + + + L+ + K LK +TL+
Sbjct: 1 MKIICQIFSGDKLELEVTEDQDINDVKKQISEVKNAKI---EEIKLLFKSKFLKSPSTLK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + ENS ++VM+ K A P N+ T T+P ++ P
Sbjct: 58 ECGITENSKLIVMVPNKK---------PAPPINKT--------TETKPAEENKAP----- 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ PE P AP P S + + E ++Q+
Sbjct: 96 ---NQPEETKKIIQPEIAPLPT-----------------VDKKSKIELPPDFEDKIKQLQ 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+G ++ RALR A N E A L S G+ P +
Sbjct: 136 QLG---YEYSECSRALRVAGFNTEIAANILLS--------------------GSIPDEID 172
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG---TLDFLRNSQQVSMMFYLFASLL 297
+ A PT G + N G A T + ++ ++ +L
Sbjct: 173 YEL-AGDLPTDGDDEN------------GEEEDASLHITPEIKKHYEEHPEKIQELIDML 219
Query: 298 FICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 357
+ D +Y + + NP +L L +LG + DF +L
Sbjct: 220 LLSDPAYY-------------FLAKNNPMLL---LTQLG---------FDVSKFDFSKL- 253
Query: 358 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417
G ++ +L + T EE++ ++RLE G+D VL+ F ACNK+E+L
Sbjct: 254 ------GPKSMYQELLDKL------TDEEKQVVKRLEEKGYDSMEVLQTFEACNKDEKLT 301
Query: 418 ANYL 421
L
Sbjct: 302 EECL 305
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus
fumigatus Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus
fumigatus A1163]
Length = 376
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA 92
+ E F+V M++K K SS A+T S AP+
Sbjct: 58 TYNIEEKGFIVCMVSKPKAPSS-AATPSQAPS 88
>gi|67466741|ref|XP_649512.1| RAD23 protein [Entamoeba histolytica HM-1:IMSS]
gi|56465972|gb|EAL44126.1| RAD23 protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707323|gb|EMD47005.1| RAD23 protein, putative [Entamoeba histolytica KU27]
Length = 314
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 320 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ- 378
+ + PQI++ +Q + +NP +LI+ + +I + + V + PQ
Sbjct: 204 LCREQPQIIESFIQHVESENPSAAQLIRNNPGMIYDIIKS--QTNDNRVPSEPQHTQPQP 261
Query: 379 -----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
++PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 262 NHAPSQPQLSPEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 311
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 54/219 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LKD
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP---PTSTQPTTTSQTP 115
L + E +V+++ KS V AP Q +T S+ P PT TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPP-----KLAPVTQPETHSTEPIQQPT-TQPITTNQ-- 109
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P+ PV D++ V E
Sbjct: 110 -------------------------------PSTQPV----DIFQSQQRQTVNVEPTEEN 134
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
+ +++MG + R+ I+ALR + NN A ++L SG+
Sbjct: 135 INHLVEMG---FLRDDAIKALRKSQNNTAIAADFLISGV 170
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 6/58 (10%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPE 129
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 6/58 (10%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPE 129
>gi|389583319|dbj|GAB66054.1| DNA repair protein RAD23, partial [Plasmodium cynomolgi strain B]
Length = 117
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Query: 380 VTVTP---EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428
+ +TP E E+I++LE++GF + L LE F AC+KNEE+AANYL ++M+++
Sbjct: 30 IPITPLNENEMESIKKLESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 81
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|12084372|pdb|1F4I|A Chain A, Solution Structure Of The Hhr23a Uba(2) Mutant P333e,
Deficient In Binding The Hiv-1 Accessory Protein Vpr
Length = 45
Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+E+EAIERL+A+GF+ +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 1 QEKEAIERLKALGFEESLVIQAYFACEKNENLAANFLLS--QNFDD 44
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 34/161 (21%)
Query: 53 LKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
++D +L++ KV ++ FVVVM +VS P + A+ S TS T
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM------------SVSKLPRDIAKEAS----TSVLSNLTD 44
Query: 113 QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNL 172
E P P+ +P + A P S+ ++ S+LV G +
Sbjct: 45 --------------EGKPMPSEKSPNVDVIESVNVATTP-STATNTLSFLKSSLVLGEDF 89
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
E+ VQ+++ MG +++ VI+A+RA +NNP+RA EYL SG
Sbjct: 90 ESVVQELVSMG---FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSA 89
F+V M++K K + S ++ VS+
Sbjct: 505 GFIVCMVSKPKPAPSTSAGVSS 526
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
A+ LV + E + Q+++ G ++R+ V+RALRAA+NNP+RA EYL++GIP
Sbjct: 76 GANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHV 129
>gi|343470186|emb|CCD17040.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 230
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 40/209 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L G E EV P+ KV D+K+ +E + Y + + VL+D+ T+
Sbjct: 56 MKIILRSLTGKEHEQEVTPDTKVQDIKRVLE-----EEYAPESLRICYNNSVLEDLETMG 110
Query: 61 ENKVAENSFVVVMLTKSK-----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
V + S V+V + K + V+ + T+S A Q Q + P + +
Sbjct: 111 NLGVGDKS-VLVFVGKKRTIQKLVAKAIEDTLSLASVGQTQEQN----VKEAPHVSEGSE 165
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-A 174
APT A S P + P+A APAP + S++ A ++ A
Sbjct: 166 APTTA---SAPTAGEQPSAETAAPAP-------------------RTGSSVAATQGVDPA 203
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNP 203
+ I M G DR+ + ALRAAY NP
Sbjct: 204 LIDSIAAM--GFEDRDQIALALRAAYMNP 230
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFV 70
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|407042326|gb|EKE41271.1| RAD23 protein, putative [Entamoeba nuttalli P19]
Length = 317
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 320 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----NEPVEGGEGNVLGQ--L 372
+ + PQI++ +Q + +NP +LI+ + +I + V G Q
Sbjct: 207 LCREQPQIIESFIQHVESENPSAAQLIRNNPGMIYDIIKSQTNDNRVPSGPQPTQPQPNH 266
Query: 373 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
A A PQ ++PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 267 APAQPQ---LSPEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 314
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 45/216 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K+ I QG D+ S LI++ ++LKD
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKEMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + E +V+++ KS V + V+ + + T+TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPPKPAPVAQPETHSTEPIQQPTTTTTQPITTNQ----- 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P+ PV D++ V E +
Sbjct: 113 ----------------------------PSIQPV----DIFQSQQRQTVNVEPTEENINH 140
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
+++MG + R+ I+ALR + NN A ++L SG+
Sbjct: 141 LVEMG---FLRDNAIKALRKSQNNTAIAADFLISGV 173
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 AENSFVVVML 74
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 67 DYSIQKDSTLHLVL 80
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 143 DYSIQKDSTLHLVL 156
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 219 DYSIQKDSTLHLVL 232
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 295 DYSIQKDSTLHLVL 308
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 371 DYSIQKDSTLHLVL 384
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 447 DYSIQKDSTLHLVL 460
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 523 DYSIQKDSTLHLVL 536
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 599 DYSIQKDSTLHLVL 612
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 675 DYSIQKDSTLHLVL 688
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEG---IPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 751 DYSIQKDSTLHLVL 764
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 382
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|7245807|pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C-Terminal Uba
Domain Of The Human Homologue Of Rad23a (Hhr23a)
Length = 47
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 46
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G E++V+PED++S +K+ IE ++G P +QQ L+ GK L+D T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 ENKV 64
ENK+
Sbjct: 58 ENKI 61
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 60/210 (28%)
Query: 195 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 254
ALRAAY NP+RAVE+L +GIP Q N PA P+ +S
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDVM-----------QRMNEPA-------INPSASSERM 152
Query: 255 ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQF 314
++ D + S++ L+ +L+ I QF
Sbjct: 153 SSLTDRLTSHMRQDDSDSA------------------LYNALMQIP------------QF 182
Query: 315 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-------GGEGN 367
+R++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P + GG N
Sbjct: 183 GEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSAGGGDN 242
Query: 368 VLGQLASAMPQAVTVTPEEREAIERLEAMG 397
V S + + EER AI+RL +G
Sbjct: 243 VPHDSVS-----IPLREEERVAIQRLVELG 267
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 39/50 (78%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 362
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 14 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63
>gi|443893900|dbj|GAC71356.1| small Nuclear ribonucleoprotein splicing factor [Pseudozyma
antarctica T-34]
Length = 176
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
F + +VQ NP LQP++Q + + NP L + L L+ G +
Sbjct: 66 FLVVMQLVQQNPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAGGAGEEM----- 120
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 430
+P ++ E+R +E++ AMG +E FF C KN E+A Y ++ +F+D
Sbjct: 121 -ELPTLAELSDEDRAGVEQIVAMGIPEDKAIESFFMCGKNVEMAVQYYFENPQDFDD 176
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K+ I+ QG + Q +I GK+L D T+
Sbjct: 1 MKLLIKSLAGGNFHLDAELSDTIGAIKQKIQAEQG---HKPEWQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVM 73
+ + E F+VVM
Sbjct: 58 DCNIKEKDFLVVM 70
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 38/49 (77%)
Query: 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 12 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60
>gi|294886021|ref|XP_002771518.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239875222|gb|EER03334.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEANFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
G + ++G+ + VQ +++MG + +E V+RA+RA++NNP+RAV+YL +GIP
Sbjct: 136 GFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVVRAMRASFNNPDRAVDYLMNGIP 188
>gi|294901159|ref|XP_002777264.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239884795|gb|EER09080.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEASFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|254568464|ref|XP_002491342.1| hypothetical protein [Komagataella pastoris GS115]
gi|238031139|emb|CAY69062.1| hypothetical protein PAS_chr2-1_0892 [Komagataella pastoris GS115]
Length = 383
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 5 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
KV S + L KS + G S S A AN + +TS+ +T
Sbjct: 62 FYKV--QSGHTIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNT 104
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 373
Q LR + Q NP++L L++L NP + LI+ FL + + + L +
Sbjct: 220 LQFLRQLHQ-NPELLPIYLKDLADNNPAVAPLIRNDPASFLVSLGVNPSEFDLSSLKHKS 278
Query: 374 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 421
T EE++AI RLE +GFD V++VF AC+++E L + L
Sbjct: 279 EFETLMEKFTEEEQKAIHRLEKLGFDTTDVIQVFEACDRDENLTKSCL 326
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V ++T+ G ++ V+P ++++K + + ++V P + LI+ K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTIAELK--VLVSEKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS---APPTSTQPTTTSQTPAP 117
E+ + +++ + SK A Q Q SS P P + AP
Sbjct: 58 ESNIQPGQAIIMHVQSSK------------NAKQPQKKSSEKRKSPKKESPIKVQEAAAP 105
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
AP Q E+ P P + AP P +A LV N A VQ
Sbjct: 106 --APTQPKEEATQKPEQPGHSMV-----APLPE---------LEAKHQLVDPPNFNALVQ 149
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPE 216
+ +MG D ALRAA NP+RA E+L + IPE
Sbjct: 150 TLTEMGFSEGD---AAHALRAAVYNPDRAAEFLLTNYIPE 186
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 305 YSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 359
S+ R L QFQ +R VQ +P+ L +LQE+G+ NP L++LI ++Q F+ L+NE
Sbjct: 6 LSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL FE + + + DV+ + Q PA + +LIH+GKVL D TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 61 ENKVAENSFVVVM 73
V E SF+V+M
Sbjct: 58 AAGVTEASFIVMM 70
>gi|440297658|gb|ELP90315.1| UV excision repair protein rad23, putative [Entamoeba invadens IP1]
Length = 330
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 423
++ E+ AI+RL +GF +A ++ + AC+KNE LAAN+LLD
Sbjct: 286 LSAEDNAAIDRLTGLGFSKAQAIQAYVACDKNENLAANFLLD 327
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ VKT++GT E EV+ + +K+ I Q D S L+ + ++LKD T T+
Sbjct: 1 MKINVKTVQGTSSEYEVQDATTIGQLKEMIHEKQNIDAASIS---LVLKSRMLKDDTQTI 57
Query: 60 EENKVAENSFVVVMLTKS 77
+ + EN FV++++ K+
Sbjct: 58 QAVGIKENDFVIMVVRKN 75
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 16/58 (27%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
Y Q VQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP+
Sbjct: 103 YEQT-------------VQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPD 144
>gi|328352143|emb|CCA38542.1| mitochondrial intermediate peptidase [Komagataella pastoris CBS
7435]
Length = 1191
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 813 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 869
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQ----- 113
KV + L KS + G S S A AN + +TS+ A TS+ P+ +
Sbjct: 870 FYKVQSGH--TIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNTSSAPSNIAAGQGAF 926
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAP 147
P + + P P+A P P P
Sbjct: 927 NPLAGLTGARYAGMDVPMPSASMFGPDGGMGPMP 960
>gi|390367531|ref|XP_783007.3| PREDICTED: ubiquilin-1-like [Strongylocentrotus purpuratus]
Length = 607
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VKT K IE+ P+ + ++K I + V Q LI GK+LKD TL+
Sbjct: 16 ISVVVKTPKDKE-TIEINPDSTIKELKDEISKKFSTTV---EQLCLIFAGKILKDNDTLK 71
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS----AAPAN 93
+N + +N VV ++ +SK +G ST + A+PAN
Sbjct: 72 QNNIKDN-MVVHLVIRSKKDQAGTSTATTSSPASPAN 107
>gi|448524417|ref|XP_003868982.1| ubiquitin-like polyubiquitin-binding protein [Candida orthopsilosis
Co 90-125]
gi|380353322|emb|CCG26078.1| ubiquitin-like polyubiquitin-binding protein [Candida
orthopsilosis]
Length = 359
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +EI K+S++K E + PAS Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEITFNSSIKISELK---ELIAEKSSIPASSQRLIYSGKVLKDTETAE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
K+ +NS + ++ + + + A++ S+ AQT SS P++
Sbjct: 61 SYKI-QNSHTIHLVKSANAAPTPATSESSTTQTAAQTPSSNIPSN 104
>gi|222064069|emb|CAQ86697.1| putative ubiquitin family protein (UBA/TS-N domain containing
protein) [Histomonas meleagridis]
Length = 257
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 20/130 (15%)
Query: 98 TSSAPPTSTQPT--TTSQTPAPTVA-----PPQSVPESAPPPAAPAPAPAPAPAPAPA-- 148
TS + T+PT T + P P A P P+ PP PAP PAP
Sbjct: 7 TSGSKEFGTRPTQNTPEEAPKPQEALPAHEEPAPKPQEEAPPVHEEPAPKQQEDPAPQVQ 66
Query: 149 -PAPVSSVSDVYGQ----AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNP 203
P P SV+ Q + S+ ++ S+L V QI+DMG D E +ALR +NN
Sbjct: 67 QPTPTISVTQPQHQTSHTSGSDALSFSDL---VDQIVDMGFSKADAE---KALRKNHNNV 120
Query: 204 ERAVEYLYSG 213
RA+EYL SG
Sbjct: 121 TRAIEYLLSG 130
>gi|428168829|gb|EKX37769.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
Length = 187
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
+ + + S + ++L + + + G P + +SSAP
Sbjct: 58 DYNIQKESTLHLVL-RLRGGAEGREKRQTKPVEKFTISSSAP 98
>gi|294872216|ref|XP_002766209.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
gi|239866868|gb|EEQ98926.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|294886433|ref|XP_002771708.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
gi|239875444|gb|EER03524.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
Length = 348
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|378755317|gb|EHY65344.1| hypothetical protein NERG_01790 [Nematocida sp. 1 ERTm2]
Length = 306
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
MK+ VKT KG + +EV+ PE V +K+ I E Q P S+ LIH GK+LKD
Sbjct: 1 MKINVKTSKGEVYSVEVEGPESTVLALKEKISEQAQA----PVSKIRLIHVGKLLKDQEP 56
Query: 59 LEENKVAENSFV--VVMLTKSKVSSSGASTVSAAPANQAQTTSSAP---PTSTQPTTTSQ 113
L+ K+ ++S V VV ++ K SS+ + + APA + S P +S+ P T
Sbjct: 57 LKTYKLEDDSMVHLVVPSSEKKASSTPSPAQAEAPAGEEAHASEVPRSRASSSAPNMTMP 116
Query: 114 TPAPTVAPPQ 123
P PQ
Sbjct: 117 NGWPGQMDPQ 126
>gi|425772801|gb|EKV11188.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum PHI26]
gi|425782032|gb|EKV19963.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum Pd1]
Length = 770
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 606 MQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 662
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 663 DYNIQKESTLHLVL 676
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
KV VK+ I +G +V Q LI+ GK+L+D T+E + E F+V M++K K S
Sbjct: 6 KVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPS 62
Query: 82 SGASTVSAAPA 92
S A+T S AP+
Sbjct: 63 S-AATPSQAPS 72
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 23/105 (21%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 365
+ R QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 6 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPP---- 61
Query: 366 GNVLGQLAS-------------AMPQA--VTVTPEEREAIERLEA 395
G+LA PQ + VTP+E+EAIER+
Sbjct: 62 ----GELADISDVEGEGGAIGEEAPQMNYIQVTPQEKEAIERVRG 102
>gi|255074919|ref|XP_002501134.1| predicted protein [Micromonas sp. RCC299]
gi|226516397|gb|ACO62392.1| predicted protein [Micromonas sp. RCC299]
Length = 308
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ VK G+ + V+ V ++K +E +D P++QQ LI++G VLKD TLE
Sbjct: 6 IHVKATSGSKITVSVELSTTVGELKTTLEAADKADT-PSAQQRLIYKGHVLKDEKTLESY 64
Query: 63 KVAENSFV 70
V E+ +
Sbjct: 65 GVGEDHVI 72
>gi|326469376|gb|EGD93385.1| deubiquitination-protection protein dph1 [Trichophyton tonsurans
CBS 112818]
Length = 476
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|326483042|gb|EGE07052.1| deubiquitination-protection protein dph1 [Trichophyton equinum
CBS 127.97]
Length = 478
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q D + + + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQ-PDCHRDAMK-LVYKGKVLDDGTTVG 58
Query: 61 ENKVAENSFVVVML 74
+N++ E F+VV +
Sbjct: 59 DNQITEQGFIVVFV 72
>gi|119473613|ref|XP_001258682.1| hypothetical protein NFIA_001330 [Neosartorya fischeri NRRL 181]
gi|119406835|gb|EAW16785.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 434
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D T L E F +T ++ ++ T +A+ T SA T S
Sbjct: 249 DGTILIERNDENERFYGRKVTVKEIMAAHVRTENASVRMLTHTLHSAQGDKQFDQTPSGV 308
Query: 115 PAPTVAPPQSV-PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
PT P + PE A APA P + + + +L N E
Sbjct: 309 AVPTGPSPSDIAPEDLANSNLMAHGALAAPAQTATETPAT-----FNDRSVHLDGVQNEE 363
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
A V Q+ MG + R + RA+RAA NP+RAVEYL +G P+
Sbjct: 364 AVVAQMESMG---FARIDIDRAMRAASFNPDRAVEYLLNGFPD 403
>gi|401419818|ref|XP_003874398.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490634|emb|CBZ25896.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 317
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKP-EDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV V++ KK I ET++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGNQHTVEVPDFSITVAEFKKQIAETLE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + + V+ + +SK S++ ST +A+ A +S+P + QP+TT+
Sbjct: 57 LSAIGMEDGN--VIHVVRSKKSAAVPSTTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|308463692|ref|XP_003094118.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
gi|308248530|gb|EFO92482.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
Length = 518
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KVFVK+ +E+E+ P+ VSD+K + + Q +I+ GK+LKD TL
Sbjct: 8 IKVFVKS-PTQKYEVEIAPDATVSDLKDKVLVL--VPTANKEQICIIYTGKILKDEETLS 64
Query: 61 ENKVAENSFVVVML 74
NK+ + V +++
Sbjct: 65 HNKIGDGHTVHLVI 78
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 178 GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|154345506|ref|XP_001568690.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066032|emb|CAM43817.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 317
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-KVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV + V++ K I ET+ PA +Q +I +GKVLKD
Sbjct: 1 MTVTIKLANGNQHTVEVADFNITVAEFKNQIAETL----AIPAEEQRIILRGKVLKDEGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTS---SAPPT-STQPTTTSQT 114
L + + + + V+ +K V+++ A+ VS+ P TS +P T +TQP T
Sbjct: 57 LSAIGMEDGNVIHVVRSKKSVATAPATNVSSTPGTSDTVTSLNTQSPATVATQPALPQAT 116
Query: 115 PAPTVA 120
P A
Sbjct: 117 ANPYAA 122
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 178 GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|149239781|ref|XP_001525766.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146449889|gb|EDK44145.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 382
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ FE+ P+ V ++K+ I T + PA+ Q LI+ GKVLKD T+E
Sbjct: 4 ITITIKSSGDQKFEVTFDPKITVLELKELIATKSST---PAASQRLIYSGKVLKDDQTVE 60
Query: 61 ENKVAENSFVVVML 74
KV +NS V ++
Sbjct: 61 SYKV-QNSHTVHLV 73
>gi|401410066|ref|XP_003884481.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
gi|325118899|emb|CBZ54451.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
Length = 405
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K GT F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGTQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDDDLIST 61
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT----PAP 117
+ V + + ++ + + V++S + +A + AQ + A T+ TS+T A
Sbjct: 62 HDVQDGHIIHLVKSAAAVAASSNTAPAAGATSAAQPSPDASGTNGSLGGTSRTASSLAAR 121
Query: 118 TVAPPQSVPESAPPPAAPAPAP 139
T + S ESAPP + P P
Sbjct: 122 TASTNASPAESAPPLSNPTADP 143
>gi|354548233|emb|CCE44970.1| hypothetical protein CPAR2_407730 [Candida parapsilosis]
Length = 364
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +E+ P K+S++K E V PA Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEVTFNPSIKISELK---ELVAEKSSIPAPSQRLIYSGKVLKDTETAE 60
Query: 61 ENKV 64
K+
Sbjct: 61 SYKI 64
>gi|341892156|gb|EGT48091.1| hypothetical protein CAEBREN_08871 [Caenorhabditis brenneri]
Length = 684
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 76 KSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP-QSVPESA-PPPA 133
K V+++ AS V PAN A T+ AP T+ P TT PAP PP + P SA PPA
Sbjct: 162 KPPVTTTPASAVKP-PANPAPNTTPAPNTTPAPNTT---PAPATKPPVTTTPASAVKPPA 217
Query: 134 APAPAPAPAPAPAPAPA 150
PAP PAP PAPA
Sbjct: 218 TPAPNTTPAPNTTPAPA 234
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 306 SYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360
+ R QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 13 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 67
>gi|157876560|ref|XP_001686626.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
gi|68129701|emb|CAJ09007.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
Length = 317
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 16/117 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKP-EDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G+ +EV V++ KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEVPDFSITVAEFKKQIAEALE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST---QPTTTS 112
L + + + + V+ +K V+ ++ S+ T +++ PTS+ QP+TT+
Sbjct: 57 LSAIGMEDGNVIHVVRSKKNVAVPSSTNASS-------TLAASDPTSSPNVQPSTTT 106
>gi|238883910|gb|EEQ47548.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 339
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +EI P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEITFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV ++ + + +V E+KV +K E + + + Q LI+ GK+L++ L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ EN F+V M+ K K S
Sbjct: 58 TYNITENGFIVCMVKKPKEES 78
>gi|68477671|ref|XP_717148.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
gi|68477834|ref|XP_717069.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438766|gb|EAK98092.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438848|gb|EAK98173.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
Length = 339
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +E+ P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEVTFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|146103390|ref|XP_001469550.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
gi|134073920|emb|CAM72659.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
Length = 317
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS--DVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVT 57
M V +K G+ +EV P+ V+ + KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSVTVAEFKKQIAEMLE----IPASEQRIIMRGKVLKDDA 55
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QT 114
L + + S V+ + +SK S + AS+ +A+ A +S+P + QP+TT+
Sbjct: 56 VLSAIGMEDGS--VIHVVRSKKSGAAASSTNASSTLAASDPTSSP--NVQPSTTTPAQPV 111
Query: 115 PAPTVAPP 122
PA T A P
Sbjct: 112 PAQTAANP 119
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,803,161,556
Number of Sequences: 23463169
Number of extensions: 324256920
Number of successful extensions: 8231843
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31445
Number of HSP's successfully gapped in prelim test: 58960
Number of HSP's that attempted gapping in prelim test: 5548767
Number of HSP's gapped (non-prelim): 1351534
length of query: 430
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 285
effective length of database: 8,957,035,862
effective search space: 2552755220670
effective search space used: 2552755220670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)