Query 014118
Match_columns 430
No_of_seqs 339 out of 1468
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:48:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 8.5E-77 2.9E-81 604.1 31.3 354 1-429 8-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 1.1E-38 3.9E-43 291.3 10.5 127 273-427 21-171 (171)
3 1pve_A HHR23B, UV excision rep 99.8 4.1E-21 1.4E-25 151.7 5.1 62 274-363 3-64 (72)
4 2f4m_B UV excision repair prot 99.8 2.4E-20 8.1E-25 143.1 7.6 49 313-361 12-60 (61)
5 3m62_B UV excision repair prot 99.8 3.8E-19 1.3E-23 150.6 7.9 77 1-80 2-78 (106)
6 1uel_A HHR23B, UV excision rep 99.8 4.8E-18 1.6E-22 140.6 12.0 78 1-81 1-81 (95)
7 4fbj_B NEDD8; effector-HOST ta 99.8 2.9E-18 9.8E-23 140.1 9.8 79 1-82 1-79 (88)
8 3phx_B Ubiquitin-like protein 99.8 3.5E-18 1.2E-22 135.9 9.8 74 1-77 5-78 (79)
9 4dwf_A HLA-B-associated transc 99.7 3.4E-18 1.2E-22 139.3 9.3 75 1-79 6-80 (90)
10 2wyq_A HHR23A, UV excision rep 99.7 8E-18 2.7E-22 135.2 9.7 76 1-79 6-84 (85)
11 3v6c_B Ubiquitin; structural g 99.7 9.9E-18 3.4E-22 137.3 9.4 74 1-77 18-91 (91)
12 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.5E-17 5.1E-22 136.9 10.4 78 1-81 2-79 (96)
13 4a20_A Ubiquitin-like protein 99.7 6.1E-18 2.1E-22 141.8 8.1 74 1-77 20-97 (98)
14 2kk8_A Uncharacterized protein 99.7 8.9E-18 3E-22 136.5 8.8 72 1-75 11-83 (84)
15 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.2E-17 7.7E-22 139.2 11.3 76 1-80 18-93 (106)
16 2lxa_A Ubiquitin-like protein 99.7 6.4E-18 2.2E-22 138.7 7.1 73 1-76 2-78 (87)
17 3plu_A Ubiquitin-like modifier 99.7 1.5E-17 5E-22 138.0 8.7 70 1-73 22-91 (93)
18 1ndd_A NEDD8, protein (ubiquit 99.7 3.5E-17 1.2E-21 127.9 10.2 75 1-78 1-75 (76)
19 4hcn_B Polyubiquitin, ubiquiti 99.7 2.9E-17 1E-21 136.7 10.0 75 1-78 23-97 (98)
20 3dbh_I NEDD8; cell cycle, acti 99.7 2E-17 6.8E-22 133.6 8.8 75 1-78 13-87 (88)
21 2faz_A Ubiquitin-like containi 99.7 3.3E-17 1.1E-21 129.7 9.1 73 1-76 3-77 (78)
22 3a9j_A Ubiquitin; protein comp 99.7 6.4E-17 2.2E-21 126.4 10.5 75 1-78 1-75 (76)
23 1wy8_A NP95-like ring finger p 99.7 8E-17 2.7E-21 130.8 11.2 77 1-80 8-86 (89)
24 1ttn_A DC-UBP, dendritic cell- 99.7 3.5E-17 1.2E-21 138.3 9.3 76 1-79 24-99 (106)
25 3n3k_B Ubiquitin; hydrolase, p 99.7 3.7E-17 1.3E-21 131.0 8.8 76 1-79 4-79 (85)
26 1wgd_A Homocysteine-responsive 99.7 5.9E-17 2E-21 133.3 10.3 77 1-80 8-90 (93)
27 2dzi_A Ubiquitin-like protein 99.7 5.4E-17 1.8E-21 128.9 9.4 73 1-76 8-80 (81)
28 1uh6_A Ubiquitin-like 5; beta- 99.7 2.4E-17 8.2E-22 138.7 7.5 71 1-74 29-99 (100)
29 2hj8_A Interferon-induced 17 k 99.7 4.3E-17 1.5E-21 132.9 8.9 76 1-79 5-80 (88)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.7 6.2E-17 2.1E-21 129.5 9.6 76 1-79 4-79 (85)
31 4eew_A Large proline-rich prot 99.7 4.8E-17 1.7E-21 132.0 8.9 71 1-75 18-88 (88)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 8.9E-17 3E-21 129.8 10.4 76 1-79 8-83 (87)
33 2uyz_B Small ubiquitin-related 99.7 4.5E-17 1.5E-21 129.4 8.2 75 1-78 4-78 (79)
34 1sif_A Ubiquitin; hydrophobic 99.7 8.9E-17 3.1E-21 131.2 9.6 76 1-79 10-85 (88)
35 2kan_A Uncharacterized protein 99.7 1.2E-16 4.2E-21 132.4 10.2 76 1-80 16-92 (94)
36 1wia_A Hypothetical ubiquitin- 99.7 1.4E-16 4.8E-21 131.4 9.9 74 1-80 8-82 (95)
37 1wyw_B Ubiquitin-like protein 99.7 1.1E-16 3.8E-21 133.1 8.6 75 1-78 22-96 (97)
38 2bwf_A Ubiquitin-like protein 99.7 2E-16 6.9E-21 124.4 9.7 71 1-75 5-75 (77)
39 1v2y_A 3300001G02RIK protein; 99.7 8.4E-17 2.9E-21 136.6 7.8 76 1-79 8-99 (105)
40 1wx8_A Riken cDNA 4931431F19; 99.7 1.1E-16 3.7E-21 132.2 7.9 76 1-80 18-93 (96)
41 1v5o_A 1700011N24RIK protein; 99.7 2.3E-16 7.8E-21 132.3 10.1 77 1-80 8-89 (102)
42 1yx5_B Ubiquitin; proteasome, 99.7 3E-16 1E-20 130.1 10.5 76 1-79 1-76 (98)
43 1wju_A NEDD8 ultimate buster-1 99.7 2.1E-16 7.3E-21 132.9 9.6 73 2-78 17-93 (100)
44 3vdz_A Ubiquitin-40S ribosomal 99.7 2.3E-16 7.9E-21 134.5 9.7 75 1-78 36-110 (111)
45 1ify_A HHR23A, UV excision rep 99.7 8.1E-17 2.8E-21 118.6 5.5 49 165-216 1-49 (49)
46 3b1l_X E3 ubiquitin-protein li 99.5 8.1E-18 2.8E-22 132.5 0.0 75 1-78 1-75 (76)
47 1dv0_A DNA repair protein HHR2 99.7 1.9E-17 6.5E-22 121.0 1.9 47 383-429 1-47 (47)
48 2klc_A Ubiquilin-1; ubiquitin- 99.7 3.6E-16 1.2E-20 131.1 9.9 74 1-78 26-99 (101)
49 1yqb_A Ubiquilin 3; structural 99.7 2.6E-16 9.1E-21 131.8 9.0 75 1-79 23-97 (100)
50 1j8c_A Ubiquitin-like protein 99.6 3.4E-16 1.2E-20 136.5 9.9 76 1-80 33-108 (125)
51 2l7r_A Ubiquitin-like protein 99.6 4.4E-16 1.5E-20 128.5 9.2 73 1-78 20-92 (93)
52 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.2E-15 4.2E-20 131.6 11.6 77 1-77 17-100 (116)
53 3l0w_B Monoubiquitinated proli 99.6 1.1E-15 3.8E-20 139.7 11.7 77 1-80 1-77 (169)
54 1wgg_A Ubiquitin carboxyl-term 99.6 5.3E-16 1.8E-20 129.1 8.4 72 1-77 8-80 (96)
55 1x1m_A Ubiquitin-like protein 99.6 9.4E-16 3.2E-20 129.8 9.8 74 1-77 13-101 (107)
56 2ojr_A Ubiquitin; lanthide-bin 99.6 1.8E-15 6E-20 128.8 10.6 75 1-78 36-110 (111)
57 2gow_A HCG-1 protein, ubiquiti 99.6 1.1E-15 3.9E-20 133.4 9.6 77 1-77 18-101 (125)
58 1wxv_A BAG-family molecular ch 99.6 2.5E-15 8.5E-20 123.2 10.1 73 1-77 8-86 (92)
59 1se9_A Ubiquitin family; ubiqu 99.6 1.5E-15 5.2E-20 132.6 9.1 79 1-79 17-106 (126)
60 3rt3_B Ubiquitin-like protein 99.6 1.7E-15 6E-20 135.5 9.7 76 1-79 82-157 (159)
61 2kdb_A Homocysteine-responsive 99.6 8.6E-16 2.9E-20 128.9 7.2 71 1-73 24-99 (99)
62 1v5t_A 8430435I17RIK protein; 99.6 2.3E-15 7.8E-20 123.5 9.5 72 1-76 8-83 (90)
63 3m63_B Ubiquitin domain-contai 99.6 5E-16 1.7E-20 130.4 5.6 72 1-76 29-100 (101)
64 2kdi_A Ubiquitin, vacuolar pro 99.6 3.6E-15 1.2E-19 127.8 10.5 76 1-79 10-85 (114)
65 2fnj_B Transcription elongatio 99.6 1.3E-15 4.6E-20 131.6 7.8 72 1-75 1-80 (118)
66 1we6_A Splicing factor, putati 99.6 2E-15 6.7E-20 128.4 8.7 76 1-79 28-107 (111)
67 4ajy_B Transcription elongatio 99.6 2.1E-15 7.1E-20 130.2 7.9 74 1-77 1-82 (118)
68 3u30_A Ubiquitin, linear DI-ub 99.6 4.2E-15 1.4E-19 135.1 10.1 75 1-78 21-95 (172)
69 2kd0_A LRR repeats and ubiquit 99.6 5.5E-15 1.9E-19 120.1 9.5 70 3-75 14-83 (85)
70 1v86_A DNA segment, CHR 7, way 99.6 2.3E-15 7.8E-20 124.9 7.3 71 1-76 18-88 (95)
71 3q3f_A Ribonuclease/ubiquitin 99.6 3.6E-15 1.2E-19 138.8 9.1 77 1-80 106-182 (189)
72 3rt3_B Ubiquitin-like protein 99.6 5.7E-15 1.9E-19 132.1 9.9 73 1-76 3-77 (159)
73 4dbg_A Ranbp-type and C3HC4-ty 99.6 1E-14 3.5E-19 123.6 9.4 73 1-76 25-100 (105)
74 3u5e_m 60S ribosomal protein L 99.6 3.1E-16 1.1E-20 136.8 0.0 77 1-80 1-77 (128)
75 2daf_A FLJ35834 protein; hypot 99.6 1.1E-14 3.7E-19 125.4 9.5 74 2-78 17-91 (118)
76 3b08_A Polyubiquitin-C, ubiqui 99.5 2.1E-14 7.1E-19 126.4 10.5 74 1-77 1-74 (152)
77 3b08_A Polyubiquitin-C, ubiqui 99.5 2.4E-14 8.1E-19 126.0 10.0 75 1-78 77-151 (152)
78 1we7_A SF3A1 protein; structur 99.5 2.6E-14 8.9E-19 122.3 9.8 77 1-80 26-112 (115)
79 3u30_A Ubiquitin, linear DI-ub 99.5 1.5E-14 5E-19 131.5 8.3 75 1-78 97-171 (172)
80 3u5c_f 40S ribosomal protein S 99.5 1.2E-15 4.2E-20 137.4 1.0 77 1-80 1-77 (152)
81 2dzj_A Synaptic glycoprotein S 99.5 1.9E-14 6.6E-19 118.0 6.4 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 7.2E-14 2.4E-18 117.5 7.1 71 1-75 9-81 (100)
83 3ai5_A Yeast enhanced green fl 99.4 1.9E-13 6.5E-18 135.7 9.2 74 1-77 234-307 (307)
84 4b6w_A Tubulin-specific chaper 99.4 1.7E-13 5.7E-18 112.0 6.0 73 2-77 4-85 (86)
85 2kjr_A CG11242; UBL, ubiquitin 99.4 9.3E-13 3.2E-17 109.6 9.2 70 1-73 16-93 (95)
86 1wf9_A NPL4 family protein; be 99.4 4.9E-13 1.7E-17 113.2 7.6 71 1-75 8-94 (107)
87 2xzm_9 RPS31E; ribosome, trans 99.4 7.3E-14 2.5E-18 129.8 0.3 72 1-80 1-72 (189)
88 2kj6_A Tubulin folding cofacto 99.4 1.7E-12 5.9E-17 108.4 8.6 71 2-75 16-95 (97)
89 1v6e_A Cytoskeleton-associated 99.3 2E-12 6.8E-17 106.9 8.4 72 1-75 8-87 (95)
90 2kzr_A Ubiquitin thioesterase 99.3 2.5E-12 8.4E-17 104.4 7.3 71 1-75 1-77 (86)
91 2lbc_A Ubiquitin carboxyl-term 99.3 5.9E-12 2E-16 109.7 10.1 39 388-426 80-118 (126)
92 1vej_A Riken cDNA 4931431F19; 99.3 3.8E-12 1.3E-16 101.3 7.2 46 169-217 26-72 (74)
93 2g3q_A Protein YBL047C; endocy 99.3 3E-12 1E-16 91.4 5.8 40 172-214 4-43 (43)
94 1vg5_A RSGI RUH-014, rhomboid 99.3 4.6E-12 1.6E-16 100.6 6.2 43 170-215 27-69 (73)
95 3shq_A UBLCP1; phosphatase, hy 99.3 4.5E-12 1.5E-16 126.7 7.1 71 1-75 6-79 (320)
96 2bwb_A Ubiquitin-like protein 99.3 5.2E-12 1.8E-16 91.7 5.3 41 170-213 5-46 (46)
97 2io1_B Small ubiquitin-related 99.2 1.1E-11 3.7E-16 102.9 7.7 76 1-79 8-83 (94)
98 1t0y_A Tubulin folding cofacto 99.2 1.7E-11 5.9E-16 106.0 9.1 74 1-77 7-88 (122)
99 2knz_A Ubiquilin-4; cytoplasm, 99.2 1.1E-11 3.7E-16 92.6 5.7 43 170-215 9-52 (53)
100 1wm3_A Ubiquitin-like protein 99.2 6E-11 2.1E-15 93.3 9.2 71 1-74 2-72 (72)
101 1veg_A NEDD8 ultimate buster-1 99.2 1.9E-11 6.6E-16 99.1 6.2 44 172-218 29-75 (83)
102 2jy5_A Ubiquilin-1; UBA, alter 99.2 2.9E-11 9.9E-16 89.9 6.2 41 170-213 10-51 (52)
103 2io0_B Small ubiquitin-related 99.2 8.7E-11 3E-15 97.0 9.5 76 1-79 6-81 (91)
104 1wji_A Tudor domain containing 99.2 3E-11 1E-15 93.3 6.1 42 172-216 9-50 (63)
105 3a4r_A Nfatc2-interacting prot 99.1 1.8E-10 6.3E-15 92.3 9.9 70 1-73 8-78 (79)
106 1wr1_B Ubiquitin-like protein 99.1 4.7E-11 1.6E-15 90.8 5.2 41 170-213 15-56 (58)
107 1wz0_A Ubiquitin-like protein 99.1 1.9E-10 6.6E-15 97.2 9.1 76 1-79 25-100 (104)
108 2dna_A Unnamed protein product 99.1 7E-11 2.4E-15 92.1 5.8 45 170-217 17-62 (67)
109 2d07_B Ubiquitin-like protein 99.1 1.8E-10 6.1E-15 95.3 8.6 74 1-77 18-91 (93)
110 2dak_A Ubiquitin carboxyl-term 99.1 4.2E-11 1.4E-15 92.4 4.4 43 172-217 9-51 (63)
111 4ae4_A Ubiquitin-associated pr 99.1 6.2E-10 2.1E-14 96.2 12.2 40 385-424 75-114 (118)
112 2g3q_A Protein YBL047C; endocy 99.1 1.6E-10 5.5E-15 82.3 5.3 38 387-424 5-42 (43)
113 1wiv_A UBP14, ubiquitin-specif 99.1 1.5E-10 5E-15 92.0 5.4 40 172-214 29-68 (73)
114 1z96_A DNA-damage, UBA-domain 99.0 1.8E-10 6E-15 80.5 5.0 39 170-211 2-40 (40)
115 2k8h_A Small ubiquitin protein 99.0 3.7E-10 1.3E-14 96.4 7.8 75 1-78 27-101 (110)
116 2crn_A Ubash3A protein; compac 99.0 1.2E-10 4.2E-15 90.2 4.2 44 171-217 8-52 (64)
117 2dag_A Ubiquitin carboxyl-term 99.0 2.8E-10 9.7E-15 90.6 5.9 43 172-217 9-52 (74)
118 2eke_C Ubiquitin-like protein 99.0 6.1E-10 2.1E-14 94.5 7.9 73 1-77 32-104 (106)
119 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 2.5E-10 8.4E-15 88.4 4.3 42 173-217 10-52 (64)
120 2ekk_A UBA domain from E3 ubiq 99.0 3.2E-10 1.1E-14 82.4 4.5 38 172-213 9-46 (47)
121 2cpw_A CBL-interacting protein 99.0 2.8E-10 9.4E-15 88.2 4.3 40 173-215 20-60 (64)
122 1wjn_A Tubulin-folding protein 99.0 1.3E-09 4.6E-14 90.1 8.2 72 2-76 11-93 (97)
123 1wji_A Tudor domain containing 98.9 8.5E-10 2.9E-14 85.2 5.3 43 386-428 9-51 (63)
124 1wgn_A UBAP1, ubiquitin associ 98.9 8.1E-10 2.8E-14 84.0 4.9 43 167-213 15-57 (63)
125 2dai_A Ubadc1, ubiquitin assoc 98.9 1.2E-09 4E-14 88.8 5.7 43 172-217 29-71 (83)
126 1vek_A UBP14, ubiquitin-specif 98.9 1.6E-09 5.6E-14 88.2 5.6 43 172-217 29-72 (84)
127 2dah_A Ubiquilin-3; UBA domain 98.8 3.2E-09 1.1E-13 79.5 5.5 41 171-214 8-49 (54)
128 2dkl_A Trinucleotide repeat co 98.8 4E-09 1.4E-13 86.0 6.1 44 386-429 21-64 (85)
129 2lbc_A Ubiquitin carboxyl-term 98.8 3.7E-09 1.3E-13 91.9 5.9 41 172-215 78-118 (126)
130 1z96_A DNA-damage, UBA-domain 98.8 4.3E-09 1.5E-13 73.3 5.0 39 384-422 2-40 (40)
131 2cpw_A CBL-interacting protein 98.8 3.4E-09 1.2E-13 82.0 4.8 42 388-429 21-63 (64)
132 1vg5_A RSGI RUH-014, rhomboid 98.8 3.4E-09 1.2E-13 84.1 4.8 47 380-426 23-69 (73)
133 2dag_A Ubiquitin carboxyl-term 98.8 4.4E-09 1.5E-13 83.7 5.2 44 386-429 9-53 (74)
134 2cwb_A Chimera of immunoglobul 98.8 5.8E-09 2E-13 88.6 6.0 42 171-215 65-107 (108)
135 2dai_A Ubadc1, ubiquitin assoc 98.8 4.7E-09 1.6E-13 85.3 5.2 44 386-429 29-72 (83)
136 1whc_A RSGI RUH-027, UBA/UBX 3 98.8 2.9E-09 9.9E-14 82.4 3.7 42 388-429 11-53 (64)
137 1ify_A HHR23A, UV excision rep 98.8 9.1E-09 3.1E-13 75.4 5.3 42 383-424 5-46 (49)
138 1wgn_A UBAP1, ubiquitin associ 98.7 9E-09 3.1E-13 78.3 5.1 47 380-426 13-59 (63)
139 2crn_A Ubash3A protein; compac 98.7 5.7E-09 1.9E-13 80.8 3.4 41 388-428 11-52 (64)
140 1wiv_A UBP14, ubiquitin-specif 98.7 1.1E-08 3.8E-13 81.1 5.1 47 382-428 25-71 (73)
141 2dkl_A Trinucleotide repeat co 98.7 1.4E-08 4.7E-13 82.9 5.5 38 173-213 22-59 (85)
142 2dak_A Ubiquitin carboxyl-term 98.7 6.3E-09 2.2E-13 80.1 3.1 43 386-428 9-51 (63)
143 2ooa_A E3 ubiquitin-protein li 98.7 1.9E-08 6.3E-13 74.0 5.2 37 388-424 13-49 (52)
144 2ekk_A UBA domain from E3 ubiq 98.7 1.5E-08 5.2E-13 73.5 4.1 39 386-425 9-47 (47)
145 3kyd_D Small ubiquitin-related 98.7 9.1E-08 3.1E-12 82.2 9.5 73 1-76 41-113 (115)
146 1vek_A UBP14, ubiquitin-specif 98.7 1.9E-08 6.6E-13 81.8 5.0 44 386-429 29-73 (84)
147 1dv0_A DNA repair protein HHR2 98.7 5.3E-09 1.8E-13 76.1 1.4 41 171-214 3-43 (47)
148 2jy5_A Ubiquilin-1; UBA, alter 98.6 3.8E-08 1.3E-12 73.0 5.4 39 387-425 13-52 (52)
149 2d9s_A CBL E3 ubiquitin protei 98.6 4.2E-08 1.4E-12 72.5 5.0 38 388-425 11-48 (53)
150 2knz_A Ubiquilin-4; cytoplasm, 98.6 5.8E-08 2E-12 72.3 5.6 39 387-425 12-51 (53)
151 2ooa_A E3 ubiquitin-protein li 98.6 6.4E-08 2.2E-12 71.2 5.2 38 172-212 11-48 (52)
152 1veg_A NEDD8 ultimate buster-1 98.5 1.1E-07 3.6E-12 77.2 5.7 42 386-427 29-70 (83)
153 2d9s_A CBL E3 ubiquitin protei 98.5 1.2E-07 4.2E-12 70.0 5.3 38 172-212 9-46 (53)
154 4ae4_A Ubiquitin-associated pr 98.5 9.8E-08 3.3E-12 82.4 4.8 40 171-213 75-114 (118)
155 2oo9_A E3 ubiquitin-protein li 98.4 3.3E-07 1.1E-11 65.5 5.5 41 169-212 1-41 (46)
156 3pge_A SUMO-modified prolifera 98.4 7.1E-07 2.4E-11 83.5 9.3 76 1-80 30-105 (200)
157 2juj_A E3 ubiquitin-protein li 98.4 3E-07 1E-11 68.1 5.0 40 385-424 6-45 (56)
158 2bwb_A Ubiquitin-like protein 98.4 4.2E-07 1.4E-11 65.8 5.3 37 388-424 9-46 (46)
159 2pjh_A Protein NPL4, nuclear p 98.4 2.5E-07 8.4E-12 74.3 4.5 69 1-73 5-78 (80)
160 3tix_A Ubiquitin-like protein 98.4 5.1E-07 1.8E-11 83.8 6.8 75 1-79 58-132 (207)
161 2juj_A E3 ubiquitin-protein li 98.3 6.8E-07 2.3E-11 66.2 4.9 39 172-213 7-45 (56)
162 1vej_A Riken cDNA 4931431F19; 98.3 7.8E-07 2.7E-11 70.6 5.7 41 387-427 30-71 (74)
163 1wr1_B Ubiquitin-like protein 98.3 7.4E-07 2.5E-11 67.6 5.2 39 387-425 18-57 (58)
164 2dah_A Ubiquilin-3; UBA domain 98.3 1.1E-06 3.6E-11 65.7 5.4 40 387-426 10-50 (54)
165 2oo9_A E3 ubiquitin-protein li 98.3 1.1E-06 3.9E-11 62.7 5.2 38 387-424 5-42 (46)
166 3k9o_A Ubiquitin-conjugating e 98.2 1.1E-06 3.7E-11 82.1 5.2 43 167-212 158-200 (201)
167 3k9o_A Ubiquitin-conjugating e 98.1 1.9E-06 6.5E-11 80.4 5.7 75 338-424 127-201 (201)
168 3goe_A DNA repair protein RAD6 98.1 1.3E-05 4.6E-10 63.9 9.2 70 2-74 11-81 (82)
169 1wj7_A Hypothetical protein (R 98.1 3.8E-06 1.3E-10 70.6 6.1 44 170-216 37-81 (104)
170 2dna_A Unnamed protein product 98.1 4.8E-06 1.6E-10 64.8 5.7 41 387-427 20-61 (67)
171 3v7o_A Minor nucleoprotein VP3 98.0 6.3E-07 2.2E-11 84.2 0.2 75 1-79 22-96 (227)
172 2jxx_A Nfatc2-interacting prot 98.0 2.9E-05 9.9E-10 64.6 9.1 70 1-73 26-96 (97)
173 2cp8_A NEXT to BRCA1 gene 1 pr 97.9 1.2E-05 4.1E-10 59.9 4.4 41 170-213 7-48 (54)
174 3e46_A Ubiquitin-conjugating e 97.9 1.4E-05 4.8E-10 77.3 6.0 91 314-424 163-253 (253)
175 2cwb_A Chimera of immunoglobul 97.8 1.7E-05 5.7E-10 67.3 5.3 39 387-425 67-106 (108)
176 2qsf_X RAD23, UV excision repa 97.8 1.5E-05 5.2E-10 72.7 4.8 41 170-213 128-168 (171)
177 1wj7_A Hypothetical protein (R 97.8 3.8E-05 1.3E-09 64.5 6.4 43 385-427 38-81 (104)
178 4efo_A Serine/threonine-protei 97.7 0.00011 3.7E-09 60.8 8.3 69 3-74 15-87 (94)
179 3uf8_A Ubiquitin-like protein 97.7 7.4E-05 2.5E-09 70.0 7.8 74 2-79 23-96 (209)
180 2l76_A Nfatc2-interacting prot 97.6 0.00025 8.4E-09 58.7 8.8 72 1-76 22-93 (95)
181 1oqy_A HHR23A, UV excision rep 97.6 2.8E-05 9.6E-10 79.0 3.9 42 386-427 168-209 (368)
182 2bps_A YUKD protein; ubiquitin 97.6 0.00012 4.2E-09 59.0 6.1 70 2-72 6-80 (81)
183 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00019 6.4E-09 62.6 6.7 68 2-72 13-119 (128)
184 3ix6_A TS, tsase, thymidylate 97.5 1.7E-05 5.8E-10 80.2 0.0 75 1-79 22-96 (360)
185 2cos_A Serine/threonine protei 97.5 0.00014 4.8E-09 53.8 4.9 38 171-211 8-46 (54)
186 2al3_A TUG long isoform; TUG U 97.4 0.00053 1.8E-08 56.2 8.2 73 1-76 10-82 (90)
187 4da1_A Protein phosphatase 1K, 97.2 5E-05 1.7E-09 77.1 0.0 74 2-79 32-105 (389)
188 3e46_A Ubiquitin-conjugating e 97.2 0.00035 1.2E-08 67.5 5.4 43 167-212 210-252 (253)
189 2cp8_A NEXT to BRCA1 gene 1 pr 97.1 0.00047 1.6E-08 51.3 3.9 39 389-427 12-51 (54)
190 3qx1_A FAS-associated factor 1 97.0 0.0027 9.2E-08 50.7 8.2 68 2-73 9-81 (84)
191 3ihp_A Ubiquitin carboxyl-term 96.7 0.0024 8E-08 71.3 8.0 40 388-427 722-761 (854)
192 2dzk_A UBX domain-containing p 96.7 0.013 4.3E-07 49.4 10.7 70 2-74 15-89 (109)
193 2pwq_A Ubiquitin conjugating e 96.1 0.0013 4.4E-08 62.1 0.7 74 338-424 142-215 (216)
194 1wj4_A KIAA0794 protein; UBX d 96.0 0.016 5.6E-07 49.9 7.3 68 2-73 45-117 (124)
195 1wgl_A TOLL-interacting protei 96.0 0.0069 2.3E-07 45.8 4.3 39 172-213 9-49 (59)
196 1otr_A Protein CUE2; protein-p 95.5 0.019 6.4E-07 41.9 4.8 39 172-213 4-44 (49)
197 1wgl_A TOLL-interacting protei 95.4 0.019 6.7E-07 43.3 4.9 40 388-427 11-52 (59)
198 2cr5_A Reproduction 8; UBX dom 95.4 0.1 3.6E-06 43.6 9.8 68 2-73 25-96 (109)
199 2dhy_A CUE domain-containing p 95.3 0.031 1.1E-06 43.3 5.8 43 168-213 14-58 (67)
200 2pwq_A Ubiquitin conjugating e 95.3 0.003 1E-07 59.6 0.0 41 171-214 176-216 (216)
201 1s3s_G P47 protein; AAA ATPase 95.3 0.06 2.1E-06 46.4 8.2 66 2-69 54-122 (127)
202 2di0_A Activating signal coint 95.0 0.062 2.1E-06 42.1 6.8 50 167-219 8-60 (71)
203 1tte_A Ubiquitin-conjugating e 95.0 0.02 6.9E-07 53.8 4.7 77 337-415 121-198 (215)
204 3ihp_A Ubiquitin carboxyl-term 94.8 0.021 7.2E-07 63.7 5.1 41 170-213 718-758 (854)
205 2daj_A KIAA0977 protein, COBL- 94.7 0.11 3.8E-06 42.0 7.6 70 2-77 12-84 (91)
206 2l32_A Small archaeal modifier 94.3 0.12 4.3E-06 40.3 7.0 60 1-73 1-60 (74)
207 2cp9_A EF-TS, EF-TSMT, elongat 93.8 0.088 3E-06 40.4 5.1 36 173-211 10-46 (64)
208 4e71_A Plexin-B2, MM1; transme 93.4 0.37 1.3E-05 40.8 8.8 64 10-74 23-109 (111)
209 1ryj_A Unknown; beta/alpha pro 93.0 0.48 1.6E-05 36.2 8.2 61 1-74 5-65 (70)
210 2r2o_A Plexin-B1; effector dom 92.3 0.41 1.4E-05 41.9 7.7 65 11-76 41-129 (138)
211 4a3p_A Ubiquitin carboxyl-term 92.2 0.52 1.8E-05 43.9 8.9 61 13-76 142-209 (217)
212 2dam_A ETEA protein; KIAA0887, 92.1 0.32 1.1E-05 37.4 6.1 46 380-425 12-59 (67)
213 3jyu_A Ubiquitin carboxyl-term 92.0 0.74 2.5E-05 43.3 9.9 62 13-77 154-222 (231)
214 1vjk_A Molybdopterin convertin 91.5 1.1 3.8E-05 36.2 9.1 68 1-73 10-92 (98)
215 2dal_A Protein KIAA0794; FAS a 91.4 0.38 1.3E-05 36.3 5.8 47 379-425 8-55 (62)
216 3rpf_C Molybdopterin convertin 90.7 0.67 2.3E-05 35.6 6.7 65 1-73 1-68 (74)
217 2dhy_A CUE domain-containing p 90.5 0.37 1.3E-05 37.2 4.9 38 387-424 19-58 (67)
218 2cos_A Serine/threonine protei 89.8 0.28 9.7E-06 36.2 3.5 40 386-425 9-49 (54)
219 3ivf_A Talin-1; FERM domain, c 89.7 0.91 3.1E-05 45.1 8.6 72 2-74 5-83 (371)
220 1v92_A NSFL1 cofactor P47; 3-h 89.4 0.61 2.1E-05 32.5 5.0 40 386-425 5-45 (46)
221 3h6n_A Plexin-D1; structural g 89.0 1.7 5.8E-05 37.6 8.4 65 10-75 16-104 (127)
222 4e74_A Plexin-A4; RBD, structu 88.3 1.2 4.2E-05 37.9 7.1 64 12-76 28-115 (117)
223 4fp9_B Mterf domain-containing 86.5 3.3 0.00011 41.1 10.2 96 313-425 91-195 (335)
224 4dbg_B Ring finger protein 31; 86.5 0.51 1.8E-05 42.3 3.8 39 171-211 101-139 (162)
225 3po0_A Small archaeal modifier 86.0 4.6 0.00016 31.6 9.0 56 11-73 18-83 (89)
226 1otr_A Protein CUE2; protein-p 85.6 0.96 3.3E-05 32.8 4.2 39 387-425 5-45 (49)
227 2juo_A GA-binding protein alph 85.0 2.3 7.9E-05 34.2 6.5 60 14-76 6-65 (89)
228 1q02_A Sequestosome 1; helical 84.4 0.67 2.3E-05 34.0 2.9 38 171-211 9-48 (52)
229 1ip9_A BEM1 protein; ubiquitin 83.4 1.9 6.4E-05 34.8 5.4 64 3-72 13-82 (85)
230 1wgk_A Riken cDNA 2900073H19 p 82.3 1.6 5.5E-05 36.8 4.9 70 1-75 12-104 (114)
231 1oey_A P67-PHOX, neutrophil cy 81.1 2.3 8E-05 34.0 5.2 45 1-50 6-50 (83)
232 1ufz_A Hypothetical protein BA 81.1 3.1 0.00011 33.3 5.8 44 381-424 25-75 (83)
233 1tyg_B YJBS; alpha beta barrel 81.0 2.7 9.1E-05 33.8 5.5 57 8-74 25-82 (87)
234 3dwg_C 9.5 kDa culture filtrat 80.6 4.1 0.00014 32.2 6.6 72 1-74 1-88 (93)
235 1ef1_A Moesin; membrane, FERM 78.5 7.3 0.00025 37.0 8.8 73 1-77 2-80 (294)
236 2cp9_A EF-TS, EF-TSMT, elongat 78.2 3 0.0001 31.8 4.7 41 381-424 7-48 (64)
237 2kmm_A Guanosine-3',5'-BIS(dip 77.6 4.1 0.00014 30.4 5.4 62 1-74 1-62 (73)
238 1f0z_A THis protein; ubiquitin 77.3 2.7 9.4E-05 31.4 4.3 61 1-74 1-61 (66)
239 1h4r_A Merlin; FERM, neurofibr 77.1 8.2 0.00028 37.1 8.8 73 1-77 23-100 (314)
240 2kl0_A Putative thiamin biosyn 75.9 3.3 0.00011 32.0 4.5 60 1-74 1-60 (73)
241 2k5p_A THis protein, thiamine- 75.7 2.9 0.0001 32.7 4.2 61 1-74 1-64 (78)
242 1tte_A Ubiquitin-conjugating e 75.1 1.8 6.2E-05 40.4 3.4 24 173-199 170-193 (215)
243 2k9x_A Tburm1, uncharacterized 75.0 0.96 3.3E-05 38.0 1.3 69 1-74 5-97 (110)
244 2lnm_A Protein TIC 40, chlorop 74.5 3.5 0.00012 30.8 4.2 34 309-347 18-51 (62)
245 3hm6_X Plexin-B1; structural g 74.4 7.7 0.00026 41.7 8.2 64 12-76 275-362 (644)
246 1ufz_A Hypothetical protein BA 73.9 6.6 0.00023 31.4 5.8 42 172-213 34-75 (83)
247 1p3q_Q VPS9P, vacuolar protein 73.7 1.5 5E-05 32.5 1.8 39 385-423 11-51 (54)
248 1ixs_A Holliday junction DNA h 73.3 3.1 0.0001 31.3 3.6 28 169-199 14-41 (62)
249 1vd2_A Protein kinase C, IOTA 73.2 9.8 0.00033 30.7 6.8 46 3-51 7-54 (89)
250 3ig3_A Plxna3 protein; plexin 73.1 11 0.00037 40.5 8.9 65 11-76 247-335 (627)
251 2dzl_A Protein FAM100B; UBA-li 73.0 6.8 0.00023 29.8 5.5 41 385-425 16-57 (66)
252 3m66_A Mterf3, mterf domain-co 72.0 16 0.00056 34.2 9.3 36 173-211 6-49 (270)
253 2l52_A Methanosarcina acetivor 71.9 15 0.00051 29.6 7.8 67 1-73 4-93 (99)
254 2qjl_A URM1, ubiquitin-related 71.4 6 0.00021 31.9 5.3 35 1-35 2-46 (99)
255 1aip_C EF-TS, elongation facto 71.4 4.5 0.00015 37.4 4.9 37 173-212 4-41 (196)
256 1tr8_A Conserved protein (MTH1 71.2 4.3 0.00015 33.7 4.3 36 173-211 66-102 (102)
257 3onh_A Ubiquitin-activating en 70.8 10 0.00034 32.7 6.7 51 20-74 19-78 (127)
258 3kuz_A Plexin-C1; structural g 69.8 15 0.00051 31.6 7.5 60 11-73 39-124 (126)
259 1xb2_B EF-TS, elongation facto 69.8 4.6 0.00016 39.4 4.9 37 173-212 5-42 (291)
260 4dbg_B Ring finger protein 31; 69.3 5.2 0.00018 35.8 4.7 40 383-422 99-139 (162)
261 1p3q_Q VPS9P, vacuolar protein 69.0 1.9 6.5E-05 31.9 1.5 39 170-211 10-50 (54)
262 3ivf_A Talin-1; FERM domain, c 68.5 16 0.00053 36.1 8.7 72 1-74 86-166 (371)
263 1pve_A HHR23B, UV excision rep 68.1 2.4 8E-05 33.2 2.0 28 317-349 33-61 (72)
264 2di0_A Activating signal coint 67.9 8.9 0.0003 29.8 5.2 38 388-425 15-54 (71)
265 1v92_A NSFL1 cofactor P47; 3-h 67.3 11 0.00038 25.8 5.2 38 172-212 5-43 (46)
266 2i1j_A Moesin; FERM, coiled-co 67.0 14 0.00047 39.3 8.3 74 1-78 5-84 (575)
267 2llw_A Heat shock protein STI1 66.8 4.4 0.00015 31.4 3.3 33 310-347 27-59 (71)
268 1wgr_A Growth factor receptor- 66.7 18 0.00063 29.7 7.3 70 3-74 12-91 (100)
269 3qij_A Protein 4.1; cytoskelet 66.6 18 0.00061 34.7 8.4 70 1-73 18-93 (296)
270 2q5w_D Molybdopterin convertin 66.2 11 0.00038 28.4 5.6 54 11-73 16-71 (77)
271 1fm0_D Molybdopterin convertin 65.8 23 0.0008 26.7 7.4 56 12-73 18-75 (81)
272 2f4m_B UV excision repair prot 65.6 2.9 9.9E-05 31.6 2.0 54 275-348 2-58 (61)
273 2qho_B E3 ubiquitin-protein li 65.4 6.8 0.00023 28.3 3.7 35 390-424 13-49 (53)
274 4eut_A Serine/threonine-protei 62.7 26 0.00088 34.2 8.9 51 11-64 322-374 (396)
275 3mva_O Transcription terminati 59.9 8.3 0.00028 37.8 4.7 37 172-211 19-59 (343)
276 2dal_A Protein KIAA0794; FAS a 58.3 14 0.00047 27.6 4.6 40 171-213 14-54 (62)
277 2cu3_A Unknown function protei 58.1 11 0.00039 27.7 4.1 56 8-74 4-59 (64)
278 2llv_A Heat shock protein STI1 57.1 7.2 0.00025 29.9 2.9 37 307-348 27-64 (71)
279 1q02_A Sequestosome 1; helical 57.0 11 0.00038 27.5 3.6 38 385-422 9-48 (52)
280 4g3o_A E3 ubiquitin-protein li 55.4 24 0.00081 26.4 5.3 43 167-213 12-56 (58)
281 1y8x_B Ubiquitin-activating en 53.5 11 0.00038 30.9 3.7 59 12-73 6-82 (98)
282 2kvr_A Ubiquitin carboxyl-term 53.2 10 0.00035 32.5 3.6 32 13-47 58-89 (130)
283 2ns5_A Partitioning-defective 51.7 68 0.0023 25.6 7.9 71 1-73 3-80 (85)
284 3e21_A HFAF1, FAS-associated f 51.6 15 0.00052 25.9 3.6 35 387-421 6-42 (45)
285 3qa8_A MGC80376 protein; kinas 51.5 16 0.00055 39.6 5.6 51 9-62 320-371 (676)
286 2kmc_A Fermitin family homolog 48.2 1.1E+02 0.0039 25.1 9.6 73 2-75 21-99 (102)
287 2g1e_A Hypothetical protein TA 48.2 51 0.0018 25.2 6.8 58 15-73 19-84 (90)
288 1ixs_A Holliday junction DNA h 47.4 21 0.00072 26.6 4.1 26 385-410 16-41 (62)
289 2inc_C TOUB protein; DIIRON, 4 47.3 77 0.0026 25.2 7.5 61 13-74 15-81 (83)
290 1tr8_A Conserved protein (MTH1 45.9 26 0.00089 28.9 4.8 38 381-421 63-101 (102)
291 1b4u_A LIGA, LIGB, protocatech 44.3 42 0.0014 29.3 6.0 48 328-400 37-89 (139)
292 1wgy_A RAP guanine nucleotide 44.1 74 0.0025 26.3 7.3 68 5-75 14-86 (104)
293 3ge3_C Toluene-4-monooxygenase 44.0 93 0.0032 24.8 7.4 61 13-74 17-82 (84)
294 1rws_A Hypothetical protein PF 43.7 7.9 0.00027 29.8 1.2 48 14-73 24-71 (77)
295 4gdk_A Ubiquitin-like protein 42.1 94 0.0032 24.8 7.5 59 14-75 23-85 (91)
296 2ylm_A Ubiquitin carboxyl-term 41.3 67 0.0023 33.6 8.3 68 2-72 341-418 (530)
297 2eel_A Cell death activator CI 40.8 1.4E+02 0.0049 24.0 9.4 50 21-76 28-79 (91)
298 3w1s_C Ubiquitin-like protein 40.5 1.1E+02 0.0036 24.6 7.5 57 14-75 26-85 (91)
299 3m66_A Mterf3, mterf domain-co 39.8 51 0.0017 30.7 6.5 33 378-410 138-172 (270)
300 3hvz_A Uncharacterized protein 38.5 70 0.0024 24.8 6.0 63 2-76 7-69 (78)
301 2dam_A ETEA protein; KIAA0887, 36.8 78 0.0027 23.8 5.9 43 170-213 16-58 (67)
302 2ekf_A Ancient ubiquitous prot 36.1 67 0.0023 24.1 5.2 40 170-213 11-52 (61)
303 3e7l_A Transcriptional regulat 35.8 42 0.0014 24.4 4.1 41 165-215 5-45 (63)
304 2dzl_A Protein FAM100B; UBA-li 35.1 68 0.0023 24.1 5.3 37 174-213 19-56 (66)
305 2hj1_A Hypothetical protein; s 34.9 50 0.0017 26.8 4.8 59 11-74 26-84 (97)
306 3h9d_A ATG8, microtubule-assoc 34.4 1.3E+02 0.0043 25.3 7.4 59 15-76 52-114 (119)
307 3m95_A Autophagy related prote 34.3 1.1E+02 0.0039 25.9 7.1 59 15-76 57-119 (125)
308 2ejs_A Autocrine motility fact 34.0 86 0.0029 23.3 5.5 40 170-213 11-52 (58)
309 3rui_B Autophagy-related prote 34.0 1.6E+02 0.0054 24.7 7.9 59 15-76 51-113 (118)
310 3au4_A Myosin-X; protein-prote 33.6 69 0.0024 33.3 6.9 58 1-61 217-280 (555)
311 1q1o_A Cell division control p 33.4 48 0.0016 27.2 4.4 26 10-35 22-47 (98)
312 2c7h_A RBBP6, retinoblastoma-b 33.3 67 0.0023 25.7 5.2 33 3-35 9-43 (86)
313 1eo6_A GATE-16, golgi-associat 31.9 1.6E+02 0.0055 24.4 7.6 59 15-76 49-111 (117)
314 2r2q_A Gamma-aminobutyric acid 31.6 1.4E+02 0.0049 24.4 7.2 57 15-74 48-108 (110)
315 2zjd_A Microtubule-associated 31.2 1.2E+02 0.0042 25.8 6.9 58 15-75 57-119 (130)
316 2kna_A Baculoviral IAP repeat- 30.2 53 0.0018 26.9 4.3 36 175-213 30-72 (104)
317 1zoq_C CREB-binding protein, i 29.2 31 0.001 24.5 2.2 26 313-338 18-43 (47)
318 3u52_E Phenol hydroxylase comp 29.2 1.5E+02 0.0051 25.1 6.8 61 13-73 40-107 (119)
319 2qho_B E3 ubiquitin-protein li 28.2 1.3E+02 0.0043 21.7 5.2 38 173-213 10-49 (53)
320 2lnm_A Protein TIC 40, chlorop 27.7 26 0.0009 25.9 1.8 42 304-351 4-45 (62)
321 1ltl_A DNA replication initiat 27.1 50 0.0017 31.4 4.1 48 313-360 27-76 (279)
322 1f2r_I Inhibitor of caspase-ac 26.8 85 0.0029 25.8 4.8 49 21-75 37-89 (100)
323 1vdl_A Ubiquitin carboxyl-term 26.3 2.3E+02 0.008 22.1 7.7 41 172-213 24-64 (80)
324 1vsq_C Mannose-specific phosph 25.9 58 0.002 28.9 4.0 53 346-398 85-141 (165)
325 3eye_A PTS system N-acetylgala 25.6 58 0.002 29.0 4.0 53 345-398 86-143 (168)
326 3cz6_A DNA-binding protein RAP 25.6 63 0.0022 28.9 4.1 45 170-217 61-112 (168)
327 3q8g_A CRAL-TRIO domain-contai 25.2 93 0.0032 30.0 5.7 44 379-422 32-83 (320)
328 2dhz_A RAP guanine nucleotide 24.3 1.5E+02 0.0052 25.0 6.1 64 8-74 17-91 (120)
329 4gmv_A RAS-associated and plec 24.2 2.4E+02 0.0083 27.0 8.4 69 3-73 34-112 (281)
330 1ble_A Fructose permease; phos 23.7 59 0.002 28.8 3.6 53 346-398 83-139 (163)
331 3hk0_A Growth factor receptor- 23.2 1.4E+02 0.0049 28.2 6.4 57 3-62 11-74 (256)
332 3e21_A HFAF1, FAS-associated f 23.2 1.1E+02 0.0038 21.4 4.2 35 171-208 4-40 (45)
333 3e7l_A Transcriptional regulat 22.9 42 0.0014 24.4 2.1 24 398-421 19-42 (63)
334 3pvl_A Myosin VIIA isoform 1; 22.5 1.5E+02 0.005 31.9 7.1 46 1-48 264-309 (655)
335 3myf_A Sensor protein; HPT, hi 22.3 52 0.0018 27.2 2.8 45 313-357 7-56 (119)
336 2lva_A Ubiquitin carboxyl-term 27.6 19 0.00065 30.9 0.0 36 389-424 21-58 (129)
337 1v8c_A MOAD related protein; r 21.9 2.1E+02 0.0072 25.1 6.9 56 14-73 17-81 (168)
338 1g2h_A Transcriptional regulat 21.8 37 0.0013 24.6 1.6 26 187-215 21-46 (61)
339 1umq_A Photosynthetic apparatu 21.8 44 0.0015 26.2 2.1 23 399-421 42-64 (81)
340 2ztd_A Holliday junction ATP-d 21.7 50 0.0017 30.6 2.8 25 172-199 164-188 (212)
341 3r8s_T 50S ribosomal protein L 21.6 1.6E+02 0.0053 23.7 5.4 41 10-53 27-68 (93)
342 3p3v_A PTS system, N-acetylgal 21.3 83 0.0028 27.8 4.1 53 345-398 83-141 (163)
343 3lxf_A Ferredoxin; iron, iron- 21.0 95 0.0032 24.9 4.1 27 2-28 2-28 (104)
344 2l9b_A MRNA 3'-END-processing 21.0 83 0.0028 26.3 3.7 30 313-346 57-86 (109)
345 1nrz_A PTS system, sorbose-spe 20.8 62 0.0021 28.7 3.1 52 346-398 82-138 (164)
346 2ylm_A Ubiquitin carboxyl-term 20.8 81 0.0028 33.0 4.5 69 3-74 133-216 (530)
347 2zc2_A DNAD-like replication p 20.8 96 0.0033 23.4 3.9 31 381-411 17-48 (78)
348 1vdl_A Ubiquitin carboxyl-term 20.4 1.5E+02 0.005 23.2 4.7 37 389-425 27-65 (80)
349 1umq_A Photosynthetic apparatu 20.3 55 0.0019 25.6 2.4 27 187-215 41-67 (81)
350 4a6q_A Histone deacetylase com 20.2 3E+02 0.01 23.9 7.3 63 13-77 56-140 (143)
351 3iqt_A Signal transduction his 20.2 33 0.0011 28.8 1.1 36 313-348 16-51 (123)
352 1cuk_A RUVA protein; DNA repai 20.1 75 0.0026 29.0 3.6 25 172-199 160-184 (203)
353 1wz3_A Autophagy 12B, ATG12B, 20.1 1.7E+02 0.0059 23.5 5.4 57 14-75 31-90 (96)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=8.5e-77 Score=604.10 Aligned_cols=354 Identities=37% Similarity=0.634 Sum_probs=248.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|++|.|+|++++||.+||++|+.+.++..+++++|||||+||+|+|+++|++|||+++++|++|+.|.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999533222999999999999999999999999999999997777776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 014118 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (430)
Q Consensus 81 ~~~~s~~~~~p~~~~~~~ssap~~t~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 160 (430)
+....++...+.+.++ ++.++. + .+.+.++.++. ++.. ++++.+++.++.+|..++.+.+..+....++
T Consensus 88 ~~~~~~~~~~~~~~~~--~~~~~~----~--~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 156 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPE--SSTSFP----P--APTSGMSHPPP--AARE-DKSPSEESAPTTSPESVSGSVPSSGSSGREE 156 (368)
T ss_dssp SCCCCCSSCCCCCSSS--CCCSCC----C--SSSCCCCCCCS--SSSC-CCCCSCSCCCCSSTTCSCCCSCSCCCSCCCC
T ss_pred CCCCCCcccCCCCCcc--ccCCCC----C--CCCCCCCCCCc--cccc-cCCccccCCCCCCCCcccccccccccccccc
Confidence 3321111111111000 000000 0 00000000000 0000 0000000000011111111111112223456
Q ss_pred ccccccccCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCCCCCCccccccCCCCCCCCCCccc
Q 014118 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (430)
Q Consensus 161 ~a~s~l~~g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (430)
.+.|+||+|+++|++|++||+|| |+|++|++|||++|||||||||||++|||+..+...+ . ..+.
T Consensus 157 ~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----~----~~~~---- 221 (368)
T 1oqy_A 157 DAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----S----VQES---- 221 (368)
T ss_dssp CCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----C----CCCC----
T ss_pred cccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----C----cccc----
Confidence 67899999999999999999999 9999999999999999999999999999987442210 0 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCchHHhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 014118 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTM 320 (430)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~Lr~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lR~~ 320 (430)
...+.. ..++.+.++|+|||++| ||++||++
T Consensus 222 -----~~~~~~----------------~~~~~~~~~l~~Lr~~p----------------------------qf~~lR~~ 252 (368)
T 1oqy_A 222 -----QVSEQP----------------ATEAAGENPLEFLRDQP----------------------------QFQNMRQV 252 (368)
T ss_dssp -----CSSCCC----------------CSSCCSCCTTHHHHHSH----------------------------HHHHHHHS
T ss_pred -----cccccc----------------CccccccchHHHHhcCh----------------------------HHHHHHHH
Confidence 000000 01223467899999999 99999999
Q ss_pred HHhCccchhHHHHHHhhhCHHHHHHHHHcHHHHHHHhcCCCCCC-CCC----ccccc--ccCCCcccccChHHHHHHHHH
Q 014118 321 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGN----VLGQL--ASAMPQAVTVTPEEREAIERL 393 (430)
Q Consensus 321 vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~~Fl~~l~~~~~~~-~g~----~~~~~--~~~~~~~i~lt~ee~~aI~rL 393 (430)
||+||++|++|||+|+++||+|+++|++||++||+||++++++. ++. +.+.. ......+|+||+||+++|+||
T Consensus 253 vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL 332 (368)
T 1oqy_A 253 IQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERL 332 (368)
T ss_dssp TTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHH
T ss_pred HHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999986531 110 00000 012235889999999999999
Q ss_pred HHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCCC
Q 014118 394 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429 (430)
Q Consensus 394 ~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~~ 429 (430)
++|||+|++|++||++||||+++|+||||++++|+|
T Consensus 333 ~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d~~ 368 (368)
T 1oqy_A 333 KALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 368 (368)
T ss_dssp HHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCCCC
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCcCC
Confidence 999999999999999999999999999999987764
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=1.1e-38 Score=291.28 Aligned_cols=127 Identities=34% Similarity=0.594 Sum_probs=99.8
Q ss_pred CCCchHHhh-hhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHHcHH
Q 014118 273 GAGTLDFLR-NSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351 (430)
Q Consensus 273 ~~~~l~~Lr-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~ 351 (430)
.+++|++|| ++| ||++||++||+||++|++|||||+++||+|+++|++||+
T Consensus 21 ~~~~l~~L~~~~P----------------------------qf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe 72 (171)
T 2qsf_X 21 QGGPPGSIGLTVE----------------------------DLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 72 (171)
T ss_dssp -------CCCCHH----------------------------HHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHH
T ss_pred ccCCHHHHHhcCH----------------------------HHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHH
Confidence 456799999 999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCC------------CCCcc---ccc--------ccCCCcccccChHHHHHHHHHHHcCCChhHHHHHHH
Q 014118 352 DFLRLINEPVEGG------------EGNVL---GQL--------ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 408 (430)
Q Consensus 352 ~Fl~~l~~~~~~~------------~g~~~---~~~--------~~~~~~~i~lt~ee~~aI~rL~~lGF~r~~viqAy~ 408 (430)
+||+|||+++.+. +|... +.. ....+.+|++|+||+++|+||++|||+|++||+||+
T Consensus 73 ~Fl~mLnep~~~~~~~m~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ 152 (171)
T 2qsf_X 73 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYF 152 (171)
T ss_dssp HHHHHHHHCCC-------------------------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHhCcccchhhhhcccccccccccccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999886531 01000 000 011124789999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcCCC
Q 014118 409 ACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 409 aCdkNe~~Aan~L~~~~~d 427 (430)
+|||||++|+||||++++|
T Consensus 153 ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 153 ACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp HTTTCHHHHHHHHTTC---
T ss_pred HcCCCHHHHHHHHHhccCC
Confidence 9999999999999998765
No 3
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.82 E-value=4.1e-21 Score=151.72 Aligned_cols=62 Identities=44% Similarity=0.880 Sum_probs=58.8
Q ss_pred CCchHHhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHHcHHHH
Q 014118 274 AGTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 353 (430)
Q Consensus 274 ~~~l~~Lr~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~~F 353 (430)
.++|+|||++| +|++||++||+||++|++|||+|+++||+|+++|++|||+|
T Consensus 3 ~~~l~~Lr~~P----------------------------qf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~F 54 (72)
T 1pve_A 3 HMPLEFLRNQP----------------------------QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHF 54 (72)
T ss_dssp TCTTGGGTTCT----------------------------TTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHH
T ss_pred CchHHHHHcCh----------------------------HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHH
Confidence 35689999999 99999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCC
Q 014118 354 LRLINEPVEG 363 (430)
Q Consensus 354 l~~l~~~~~~ 363 (430)
++||++++++
T Consensus 55 l~ll~e~~~~ 64 (72)
T 1pve_A 55 IQMLNEPVQE 64 (72)
T ss_dssp HHHHHSCSCC
T ss_pred HHHHcCCccC
Confidence 9999998764
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.81 E-value=2.4e-20 Score=143.15 Aligned_cols=49 Identities=45% Similarity=0.957 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHHcHHHHHHHhcCCC
Q 014118 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 361 (430)
Q Consensus 313 ~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~~Fl~~l~~~~ 361 (430)
+|++||++||+||++|+++||+|+++||+|+++|++|||+|++||++++
T Consensus 12 qf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 12 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 9999999999999999999999999999999999999999999999874
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.8e-19 Score=150.56 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.8e-18 Score=140.63 Aligned_cols=78 Identities=45% Similarity=0.705 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~---~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+||+++|+.+.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||+++++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 014118 78 KVSS 81 (430)
Q Consensus 78 k~~~ 81 (430)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=2.9e-18 Score=140.06 Aligned_cols=79 Identities=34% Similarity=0.503 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999988765
Q ss_pred CC
Q 014118 81 SS 82 (430)
Q Consensus 81 ~~ 82 (430)
..
T Consensus 78 ~~ 79 (88)
T 4fbj_B 78 GL 79 (88)
T ss_dssp --
T ss_pred CC
Confidence 43
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=135.89 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 9
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=3.4e-18 Score=139.34 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+| ++++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.73 E-value=8e-18 Score=135.24 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~---~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+||+++|+.+.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||+++++|||+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999999876
Q ss_pred CC
Q 014118 78 KV 79 (430)
Q Consensus 78 k~ 79 (430)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=9.9e-18 Score=137.29 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998754
No 12
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=1.5e-17 Score=136.93 Aligned_cols=78 Identities=36% Similarity=0.584 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.|+|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
Q ss_pred C
Q 014118 81 S 81 (430)
Q Consensus 81 ~ 81 (430)
.
T Consensus 79 ~ 79 (96)
T 3k9o_B 79 D 79 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 13
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.72 E-value=6.1e-18 Score=141.83 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCcHHHHHHHH-HHHhCCCCCCCCCcEEEeCCeecCCcCchhhccc-CCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~I--eV~~s~TV~dLK~kI-~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI-~e~stI~vmv~k 76 (430)
|+|+||+++|++|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+++|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 014118 77 S 77 (430)
Q Consensus 77 ~ 77 (430)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=8.9e-18 Score=136.52 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCee-cCCcCchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKi-L~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+||. |+|+++|++|||+++++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 15
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.2e-17 Score=139.23 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+.+|+ +.|+|++++||.+||++|+.+.| +++++|||+|+||+|+|+++|++|+|+++++|||+++++..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999998886 79999999999999999999999 999999999999999999999999999999999999876544
No 16
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.4e-18 Score=138.74 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHH-HHHhCCCCCCCCCcEEEeCCeecCCcCchhhccc-CCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~--~s~TV~dLK~kI-~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI-~e~stI~vmv~k 76 (430)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .++++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999875
No 17
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.71 E-value=1.5e-17 Score=138.02 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
|+|+||++.|+++.|+|++++||++||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999986
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=3.5e-17 Score=127.88 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+.+|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 19
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=136.65 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.71 E-value=2e-17 Score=133.56 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.3e-17 Score=129.70 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~-~Ie-V~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+||+++|+++ .++ |++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||+++++|||+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 899 9999999999999999999 99999999999999999999999999999999999875
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=6.4e-17 Score=126.40 Aligned_cols=75 Identities=37% Similarity=0.601 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 23
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=8e-17 Score=130.78 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=72.7
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~g-k~~~I-eV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++| +++.| +|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 59999999999999999999 9999999999999999999999999999999999998776
Q ss_pred CC
Q 014118 79 VS 80 (430)
Q Consensus 79 ~~ 80 (430)
..
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 24
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.5e-17 Score=138.26 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.++|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|||+++++|||++++++.
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987654
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.7e-17 Score=131.01 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.++|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987754
No 26
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.9e-17 Score=133.33 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.3
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCCCcEEEeCCeecCCcCchhhc--ccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk--~~~IeV~~s~TV~dLK~kI~~~~--g~~~ip~~~QkLIy~GKiL~Dd~tLsdy--gI~e~stI~vmv 74 (430)
|+|+||+.+++ .+.|+|++++||.+||++|+... + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999988 67788889999999999999998 7 999999999999999999999999 999999999998
Q ss_pred ecCCCC
Q 014118 75 TKSKVS 80 (430)
Q Consensus 75 ~k~k~~ 80 (430)
+.+..+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876643
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.4e-17 Score=128.89 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 28
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.4e-17 Score=138.71 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+||+++|+++.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999863
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=132.92 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.2e-17 Score=129.48 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.++|++++||.+||++|++..+ +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987654
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=131.95 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=8.9e-17 Score=129.80 Aligned_cols=76 Identities=29% Similarity=0.446 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987654
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.69 E-value=4.5e-17 Score=129.43 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+.+|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=8.9e-17 Score=131.17 Aligned_cols=76 Identities=33% Similarity=0.582 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999887653
No 35
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-16 Score=132.40 Aligned_cols=76 Identities=30% Similarity=0.370 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCc-CchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd-~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||++++ ++.++|++++||.+||++|+.+.| +|+++|||+|+||+|+|+ ++|++|+|+++++|+|+++.++.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987764
Q ss_pred C
Q 014118 80 S 80 (430)
Q Consensus 80 ~ 80 (430)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.4e-16 Score=131.42 Aligned_cols=74 Identities=28% Similarity=0.320 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCc-CchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd-~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+.+.++|++++||.+||++|+... +++|||||+||+|+|+ ++|++|+|+++++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999997663 7899999999999999 99999999999999999887654
Q ss_pred C
Q 014118 80 S 80 (430)
Q Consensus 80 ~ 80 (430)
+
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.67 E-value=1.1e-16 Score=133.12 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++|+++.|+|.+++||.+||++|+.+.| +|+++|||||+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 38
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.67 E-value=2e-16 Score=124.37 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|+|+||+ +|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999864
No 39
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=8.4e-17 Score=136.56 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------------CCcEEEeCCeecC-CcCchhhccc
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~---------------~~QkLIy~GKiL~-Dd~tLsdygI 64 (430)
|+|+||+++|++|.|+|++++||.+||++|+.+.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 5699999999
Q ss_pred CCCcEEEEEEecCCC
Q 014118 65 AENSFVVVMLTKSKV 79 (430)
Q Consensus 65 ~e~stI~vmv~k~k~ 79 (430)
+++++|||+.+.+..
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999988765
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.1e-16 Score=132.23 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+. |+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 78999998 89999999999999999999999999 999999999999999999999999999999999998876543
No 41
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.3e-16 Score=132.35 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=70.5
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCc-CchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~g----k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd-~tLsdygI~e~stI~vmv~ 75 (430)
|+|+||+..+ ++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+ ++|++|+|+++++|||+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999988 7999999999999999987
Q ss_pred cCCCC
Q 014118 76 KSKVS 80 (430)
Q Consensus 76 k~k~~ 80 (430)
.+..+
T Consensus 85 ~~gg~ 89 (102)
T 1v5o_A 85 DNVGL 89 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.66 E-value=3e-16 Score=130.11 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=132.89 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=65.6
Q ss_pred EEEEEeCC----CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 2 kI~VKtl~----gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
.|.|+..+ ++++.|+|++++||.+||++|+++.| +|+++|||||+||+|+|++||++|+|+++++|+|| +.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl-~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL-ELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE-CCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE-EEC
Confidence 46777776 77899999999999999999999999 99999999999999999999999999999999555 444
Q ss_pred C
Q 014118 78 K 78 (430)
Q Consensus 78 k 78 (430)
+
T Consensus 93 g 93 (100)
T 1wju_A 93 Q 93 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.66 E-value=2.3e-16 Score=134.48 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 45
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.65 E-value=8.1e-17 Score=118.62 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.3
Q ss_pred ccccCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 014118 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (430)
Q Consensus 165 ~l~~g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP~ 216 (430)
+|++|+++++.|++||+|| |+|++|++|||+++||+|||+|||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 46
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=8.1e-18 Score=132.45 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|+|+|+||.|+|+++|++|||+++++|||+++.++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 47
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.65 E-value=1.9e-17 Score=120.99 Aligned_cols=47 Identities=53% Similarity=0.905 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCCC
Q 014118 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429 (430)
Q Consensus 383 t~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~~ 429 (430)
|+||.++|+||++|||+|..||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 68899999999999999999999999999999999999999987753
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=131.14 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+. |+.+.++|++++||.+||++|+...| +|+++|||+|+||+|+|+++|++|||+++++|+|+++++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.6e-16 Score=131.79 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+.+|+ +.++|++++||.+||++|+...| +|+++|||+|+||+|+|+++|++|||+++++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999987654
No 50
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.4e-16 Score=136.47 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+. |+.+.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999999876543
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=128.52 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+ |+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7999998 89999999999999999999999999 9999999999999999999999999999999999988754
No 52
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.2e-15 Score=131.58 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=65.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCcEEEeCCeecCCcCchhhcccCCCc--EEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~---~i--p~~~QkLIy~GKiL~Dd~tLsdygI~e~s--tI~vm 73 (430)
|+|+||+++|+++.|+|++++||.+||++|+...+++ .+ ++++|||||+||+|+|+++|++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999943321 13 69999999999999999999999998774 56666
Q ss_pred EecC
Q 014118 74 LTKS 77 (430)
Q Consensus 74 v~k~ 77 (430)
++..
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 6543
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.63 E-value=1.1e-15 Score=139.68 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
No 54
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=5.3e-16 Score=129.10 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~-~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+|| +.|+.| .|+|++++||.+||++|++.+| +|+++|||+|+||+|+|+ +|++|+|+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999987644
No 55
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=9.4e-16 Score=129.76 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCcHHHHHHHHHHHh--CCCCCCCCC-cEEEeCCeecCCcCchhhcccC
Q 014118 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (430)
Q Consensus 1 MkI~VKtl~g---k~~~IeV~--------~-s~TV~dLK~kI~~~~--g~~~ip~~~-QkLIy~GKiL~Dd~tLsdygI~ 65 (430)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+... | +|+++ |||||+||+|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 88999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCcEEEEEEecC
Q 014118 66 ENSFVVVMLTKS 77 (430)
Q Consensus 66 e~stI~vmv~k~ 77 (430)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=128.79 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=133.37 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCcEEEeCCeecCCcCchhhcccCCCc--EEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~---~i--p~~~QkLIy~GKiL~Dd~tLsdygI~e~s--tI~vm 73 (430)
|+|+||+++|+++.|+|++++||.+||++|+...+.+ .+ ++++|||||+||+|+|+++|++|+|++++ +|||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 6899999999999999999999999999999843211 15 48999999999999999999999999877 56666
Q ss_pred EecC
Q 014118 74 LTKS 77 (430)
Q Consensus 74 v~k~ 77 (430)
++.+
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 6554
No 58
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.5e-15 Score=123.20 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCC-cCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s-----~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~D-d~tLsdygI~e~stI~vmv 74 (430)
|+|+||+ .|+.+.|+|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|+++++|||+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999985 999999999999999 99999999999999998 6689999999999999987
Q ss_pred ecC
Q 014118 75 TKS 77 (430)
Q Consensus 75 ~k~ 77 (430)
++.
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 59
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=1.5e-15 Score=132.64 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhC--CCCCCC--CCcEEEeCCeecCCcCchhhcccCCC------cE
Q 014118 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQG--SDVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (430)
Q Consensus 1 MkI~VKtl~gk~~-~IeV~~s~TV~dLK~kI~~~~g--~~~ip~--~~QkLIy~GKiL~Dd~tLsdygI~e~------st 69 (430)
|+|+||+++|+.+ .+++++++||.+||++|+...+ ++.+|+ ++|||||+||+|+|++||++|+|.++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 6999999999999999976543 122775 79999999999999999999999998 57
Q ss_pred EEEEEecCCC
Q 014118 70 VVVMLTKSKV 79 (430)
Q Consensus 70 I~vmv~k~k~ 79 (430)
+||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888877654
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.60 E-value=1.7e-15 Score=135.49 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999998764
No 61
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=8.6e-16 Score=128.93 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.2
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh-CCCCCCCCCcEEEeCCeecCCcCchhhc--ccCCCcEEEEE
Q 014118 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk--~~~IeV~~s~TV~dLK~kI~~~~-g~~~ip~~~QkLIy~GKiL~Dd~tLsdy--gI~e~stI~vm 73 (430)
|+|+||+++|+ .+.|+|++++||.+||++|+.+. |. +|+++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999874 51 456999999999999999999999 99999999984
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=2.3e-15 Score=123.48 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE---eCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~I-eV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI---y~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+||. .|++|.| +|++++||.+||++|++++| +|+++|||+ |+||+|+|+.+|++|+|+++++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999998653
No 63
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5e-16 Score=130.43 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+||+ .|+.+.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 889999999999999999999999999 99999999999999999999999999999999998764
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.6e-15 Score=127.82 Aligned_cols=76 Identities=33% Similarity=0.522 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
.+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987754
No 65
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.60 E-value=1.3e-15 Score=131.57 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.4
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccC-------CCcEEEE
Q 014118 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (430)
Q Consensus 1 MkI~VKtl~gk-~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~-------e~stI~v 72 (430)
|.++|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ .+++|||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77778777776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 014118 73 MLT 75 (430)
Q Consensus 73 mv~ 75 (430)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=2e-15 Score=128.42 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=72.2
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl---~gk~~~IeV~~-s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+||+. +|+.+.++|++ ++||.+||++|+...| +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 014118 77 SKV 79 (430)
Q Consensus 77 ~k~ 79 (430)
++.
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 67
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.58 E-value=2.1e-15 Score=130.18 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=69.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCC-------CcEEEE
Q 014118 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (430)
Q Consensus 1 MkI~VKtl~gk-~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e-------~stI~v 72 (430)
|-|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|||
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 77888877776 688999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEecC
Q 014118 73 MLTKS 77 (430)
Q Consensus 73 mv~k~ 77 (430)
++|..
T Consensus 78 vlr~~ 82 (118)
T 4ajy_B 78 AFRAD 82 (118)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99863
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=135.10 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++|+++.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999987643
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=5.5e-15 Score=120.06 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEe
Q 014118 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 3 I~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
+++++++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||+++++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567778999999999999999999999999999 9999999999999999999999999999999999864
No 70
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=2.3e-15 Score=124.89 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+|| +.+++|.|+|++++||.+||++|+..+| +|+++|||+|+||+| |+.+|++|+|+++++||||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678998 6789999999999999999999999999 999999999999999 5569999999999999998654
No 71
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.57 E-value=3.6e-15 Score=138.76 Aligned_cols=77 Identities=35% Similarity=0.543 Sum_probs=73.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|||+|+||+|+|+++|++|+|+++++|||+++.++..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877643
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.57 E-value=5.7e-15 Score=132.15 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE-e-CCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI-y-~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+ | +||.|+|+++|++|+|+++++|+|+++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 89999999999999999999999999999999999 999999999 9 8999999999999999999999999873
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=1e-14 Score=123.65 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=68.5
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhccc-CCCcEEEEEEec
Q 014118 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~g--k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI-~e~stI~vmv~k 76 (430)
|+|+|++..+ .++.|+|++++||.+||++|++++| +|+++|||||+||.|+|+++|++||| ++|++|||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999974 6899999999999999999999999 99999999999999999999999999 599999999854
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.55 E-value=3.1e-16 Score=136.81 Aligned_cols=77 Identities=35% Similarity=0.540 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.|+|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|||+++++|+|+++.++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877643
No 75
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=125.35 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=67.9
Q ss_pred EEEEE-eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 2 kI~VK-tl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
.|+|+ ...++.+.++++++.||++||++|+.+.+ +|+++|+|||+||+|+|+.||++|||+++.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45665 55688999999999999999999999999 9999999999999999999999999999999999988644
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=2.1e-14 Score=126.41 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||+++++|+|+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998643
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.53 E-value=2.4e-14 Score=126.03 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998764
No 78
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.53 E-value=2.6e-14 Score=122.27 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=70.2
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEE
Q 014118 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (430)
Q Consensus 1 MkI~VKtl----------~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI 70 (430)
++|+|+.. +|+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 014118 71 VVMLTKSKVS 80 (430)
Q Consensus 71 ~vmv~k~k~~ 80 (430)
||+++.++..
T Consensus 103 ~lv~rl~GGk 112 (115)
T 1we7_A 103 HLALKERSGP 112 (115)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999877643
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=131.48 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999998764
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.52 E-value=1.2e-15 Score=137.37 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|++|+|+.+|++|+|+++++|+|+++.++..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877654
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=117.99 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCCCCCCcEEEeC--CeecCCcCchhhcccCCCcEEEE
Q 014118 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 1 MkI~VKtl~gk~~--~I-eV~~s~TV~dLK~kI~~~-~g~~~ip~~~QkLIy~--GKiL~Dd~tLsdygI~e~stI~v 72 (430)
|+|+||+++|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999876
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=7.2e-14 Score=117.51 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeecCCcCchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy--~GKiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|.+++++++|+++.|+|++++||.+||++|++++| +|+++|||+| .|+ |+|+++|++|+|+.+++|||+..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56777889999999999999999999999999999 9999999996 566 99999999999999999999764
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.43 E-value=1.9e-13 Score=135.74 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||+|+|+++|++|+|+++++|+|++|.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.41 E-value=1.7e-13 Score=112.04 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=64.1
Q ss_pred EEEEE--eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe-------CCeecCCcCchhhcccCCCcEEEE
Q 014118 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 2 kI~VK--tl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy-------~GKiL~Dd~tLsdygI~e~stI~v 72 (430)
+|.|. ..+.+.+++.+++++||.+||++|+.++| +|+++||||| .||.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 45554 33566789999999999999999999999 9999999997 489999999999999999999999
Q ss_pred EEecC
Q 014118 73 MLTKS 77 (430)
Q Consensus 73 mv~k~ 77 (430)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97643
No 85
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.39 E-value=9.3e-13 Score=109.56 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.5
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC--Ce---ec-CCcCchhhcccCCCcEEEE
Q 014118 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 1 MkI~VKtl~g--k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~--GK---iL-~Dd~tLsdygI~e~stI~v 72 (430)
++|+|++..+ +.++++|++++||.+||++|+..+| +|+++|||+|. || .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 4678887655 4789999999999999999999999 99999999998 55 34 8999999999999999998
Q ss_pred E
Q 014118 73 M 73 (430)
Q Consensus 73 m 73 (430)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=4.9e-13 Score=113.16 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-----------e----cCCcCchhhccc
Q 014118 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~-~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GK-----------i----L~Dd~tLsdygI 64 (430)
|+|+||+.+|+. .|+|+ +++||.+||++|+.++| +|+++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 4 589999999999
Q ss_pred CCCcEEEEEEe
Q 014118 65 AENSFVVVMLT 75 (430)
Q Consensus 65 ~e~stI~vmv~ 75 (430)
++|++|||...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998764
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.35 E-value=7.3e-14 Score=129.75 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|||||+|++|+|+.+|+ ++++|||+++.++..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 89999999999999999999999999999999999 9999999999999999999999 889999999876543
No 88
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=1.7e-12 Score=108.41 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=62.6
Q ss_pred EEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe---e----cCCcCchhhcccCCCcEEEE
Q 014118 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK---V----LKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 2 kI~VKtl~g--k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GK---i----L~Dd~tLsdygI~e~stI~v 72 (430)
+|+|++... +.++++|++++||.+||++|+.++| +|+++|||+|.|| . ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 577776443 5789999999999999999999999 9999999999884 3 58999999999999999999
Q ss_pred EEe
Q 014118 73 MLT 75 (430)
Q Consensus 73 mv~ 75 (430)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 854
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=2e-12 Score=106.92 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=63.4
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCcCchhhcccCCCcEEEE
Q 014118 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 1 MkI~VKtl~gk-~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G---Ki----L~Dd~tLsdygI~e~stI~v 72 (430)
++|+|+..... .++++|++++||.+||++|+..+| +|+++|||+|.| |. |+|+++|++|||+++++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 46788876553 688999999999999999999999 999999999987 54 58999999999999999999
Q ss_pred EEe
Q 014118 73 MLT 75 (430)
Q Consensus 73 mv~ 75 (430)
+-.
T Consensus 85 ~d~ 87 (95)
T 1v6e_A 85 IDH 87 (95)
T ss_dssp BCC
T ss_pred EEC
Confidence 854
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.32 E-value=2.5e-12 Score=104.39 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.6
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC--CeecC---CcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~Ie-V~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~--GKiL~---Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+||+.+|+. .++ +++++||.+||.+|+++.| +++++|+|+|+ +|.|+ |+++|++|||++|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999964 477 9999999999999999999 99999999997 48874 68899999999999998864
Q ss_pred e
Q 014118 75 T 75 (430)
Q Consensus 75 ~ 75 (430)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.32 E-value=5.9e-12 Score=109.68 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCC
Q 014118 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~ 426 (430)
++|++|++|||+|+.|++|+.+|++|++.|++|||++..
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 569999999999999999999999999999999999876
No 92
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.30 E-value=3.8e-12 Score=101.26 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 014118 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (430)
Q Consensus 169 g~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~GIP~~ 217 (430)
.+.|++.|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 356899999999999 9 899999999999999999999999998864
No 93
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.30 E-value=3e-12 Score=91.36 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GI 214 (430)
.++.|++|++|| |+|++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 478999999999 9999999999999999999999999986
No 94
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.27 E-value=4.6e-12 Score=100.61 Aligned_cols=43 Identities=37% Similarity=0.424 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
..+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 27 ~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 45799999999999 99999999999999999999999999944
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=4.5e-12 Score=126.71 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE---eCCeecCCcCchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI---y~GKiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|||++|++|+||.+
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 578999 6899999999999999999999999999 999999999 8999999999999999999999999964
No 96
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.26 E-value=5.2e-12 Score=91.71 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35899999999999 9 68889999999999999999999986
No 97
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=1.1e-11 Score=102.89 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++++||+|.|+.|.++.|+++|++.++++|+|+++..+.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999999987664
No 98
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.25 E-value=1.7e-11 Score=106.00 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCcCchhhcccCCCcEEEE
Q 014118 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 1 MkI~VKtl~gk-~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G---Ki----L~Dd~tLsdygI~e~stI~v 72 (430)
|+|+|++..+. .++++|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46788876553 688999999999999999999999 999999999987 43 48999999999999999999
Q ss_pred EEecC
Q 014118 73 MLTKS 77 (430)
Q Consensus 73 mv~k~ 77 (430)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 87543
No 99
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=92.57 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
+.|+..|++|++|| | +|+.+++||++++||++||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45899999999999 9 9999999999999999999999999965
No 100
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.20 E-value=6e-11 Score=93.34 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+|++.+|+.+.+.|.+++++..||+.++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 899999999999999999999999999999999873
No 101
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.19 E-value=1.9e-11 Score=99.12 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQT 218 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~--G-IP~~~ 218 (430)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 488999999999 99999999999999999999999999 7 77654
No 102
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.18 E-value=2.9e-11 Score=89.92 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
..|+..|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46899999999999 9 99999999999999999999999986
No 103
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=8.7e-11 Score=96.97 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+||+.+|+.+.+.|.+++++..||+.++++.| ++++++||+|.|+.|.++.|.++|++.++++|.|++...+.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57899999999999999999999999999999999 89999999999999999999999999999999999887653
No 104
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.17 E-value=3e-11 Score=93.29 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP~ 216 (430)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 588999999999 999999999999999999999999999543
No 105
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.15 E-value=1.8e-10 Score=92.33 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk-~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
|+|+|++.+|+ .+.+.|.+++++..||+.++++.| ++++++||+|.|+.|.++.|.++|++.++++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67999999996 899999999999999999999999 89999999999999999999999999999999986
No 106
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.13 E-value=4.7e-11 Score=90.75 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56899999999999 9 79999999999999999999999998
No 107
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.11 E-value=1.9e-10 Score=97.19 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+|++.+|+.+.+.|..++++..||..++++.| ++++.+||+|.|+.|.++.|.++|++.++++|+|++...+.
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57999999999999999999999999999999999 89999999999999999999999999999999999876654
No 108
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.11 E-value=7e-11 Score=92.10 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 014118 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~GIP~~ 217 (430)
..|+..|++|++|| | +|+.+++||++++||++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 45889999999999 9 777889999999999999999999998864
No 109
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.11 E-value=1.8e-10 Score=95.29 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| ++++.+||+|.|+.|.++.|.++|++.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57899999999999999999999999999999999 899999999999999999999999999999999998764
No 110
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=92.40 Aligned_cols=43 Identities=40% Similarity=0.677 Sum_probs=40.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP~~ 217 (430)
.++.|++||+|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 588999999999 9999999999999999999999999997753
No 111
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.11 E-value=6.2e-10 Score=96.16 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 385 ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
++.+.|.+|++|||++.+|.+|...|+.|.+.|+.|||..
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3556799999999999999999999999999999999975
No 112
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.06 E-value=1.6e-10 Score=82.31 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 387 ~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
.++|++|++|||+|+.|++|+.+|++|.+.|++|||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999985
No 113
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.05 E-value=1.5e-10 Score=92.00 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GI 214 (430)
.++.|++|++|| |+|++|++|||+++||++||||||+++.
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 478999999999 9999999999999999999999999984
No 114
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.05 E-value=1.8e-10 Score=80.46 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 014118 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~ 211 (430)
+++++.|++||+|| |+|+++++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35788999999999 9999999999999999999999995
No 115
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.04 E-value=3.7e-10 Score=96.42 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k 78 (430)
|+|+|++.+|+.+.+.|..++++..||+.++++.| ++++++||+|.|+.|.++.|.++|++.++++|+|++...+
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999987654
No 116
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.04 E-value=1.2e-10 Score=90.18 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=40.3
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 014118 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV~~ALrAafn-NpdRAVEyL~~GIP~~ 217 (430)
..+..|++|++|| |+|+.|++||++++| |+++|++||+.++++.
T Consensus 8 ~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 8 SSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 3567899999999 999999999999999 9999999999998753
No 117
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.8e-10 Score=90.56 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafn-NpdRAVEyL~~GIP~~ 217 (430)
.++.|++||+|| |+|++|++|||+++| |+++|+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 118
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.01 E-value=6.1e-10 Score=94.47 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
|+|+|++ +|+.+.+.|..++++..||+.++++.| ++++.+||+|.|+.|.++.|.++|++.++++|.|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5789999 999999999999999999999999999 889999999999999999999999999999999998764
No 119
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.99 E-value=2.5e-10 Score=88.42 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhc-CChHHHHHHHHhCCCCC
Q 014118 173 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 217 (430)
Q Consensus 173 e~~V~~i~eMG~~~f~reqV~~ALrAaf-nNpdRAVEyL~~GIP~~ 217 (430)
++.|++||+|| |+|++|++|||+++ +|+++|++||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 46899999999 99999999999994 89999999999998754
No 120
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=82.36 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+++.|++|++|| |+|++|++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 588999999999 9999999999999 6999999999864
No 121
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=2.8e-10 Score=88.17 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCC
Q 014118 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 215 (430)
Q Consensus 173 e~~V~~i~eMG~~~f~reqV~~ALrAafn-NpdRAVEyL~~GIP 215 (430)
+..|++||+|| |+|++|++|||+++| |+++|+|||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 56899999999 999999999999999 99999999998854
No 122
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=1.3e-09 Score=90.08 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=62.2
Q ss_pred EEEEEe---CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC------ee-c-CCcCchhhcccCCCcEE
Q 014118 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (430)
Q Consensus 2 kI~VKt---l~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G------Ki-L-~Dd~tLsdygI~e~stI 70 (430)
+|+|++ .+++.+.+.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|.++|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 567775 4677899999999999999999999999 999999999873 22 5 67889999999999999
Q ss_pred EEEEec
Q 014118 71 VVMLTK 76 (430)
Q Consensus 71 ~vmv~k 76 (430)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998743
No 123
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=8.5e-10 Score=85.18 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~ 428 (430)
+.++|++|++|||+|+.|++||.+|++|.+.|++|||++..+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4578999999999999999999999999999999999986543
No 124
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=8.1e-10 Score=83.97 Aligned_cols=43 Identities=28% Similarity=0.579 Sum_probs=38.6
Q ss_pred ccCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 167 ~~g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+++++ ++.|..|++|| |.++|+++||++..||+|||+|||++-
T Consensus 15 ls~se-~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 15 LSPSE-RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp CCHHH-HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hCcch-HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 33444 77899999999 999999999999999999999999975
No 125
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=88.82 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP~~ 217 (430)
.++.|++||+|| |+|++|++|||+++||+++|+|||++++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 588999999999 9999999999999999999999999997643
No 126
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.88 E-value=1.6e-09 Score=88.18 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHhCCCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafn-NpdRAVEyL~~GIP~~ 217 (430)
.+..|++||+|| |+|++|++||++++| |+++|++||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999998753
No 127
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.84 E-value=3.2e-09 Score=79.49 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.0
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCC
Q 014118 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~GI 214 (430)
.|+..|++|++|| | +++.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4789999999999 9 555689999999999999999999873
No 128
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.83 E-value=4e-09 Score=86.05 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~~ 429 (430)
+.++|++|++|||+|+.|++|+.+|++|.+.|++|||++..|.|
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 46789999999999999999999999999999999999988876
No 129
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.82 E-value=3.7e-09 Score=91.93 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
.+..|++|++|| |+|++|++|||+++||++||+|||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 588999999999 99999999999999999999999999987
No 130
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.81 E-value=4.3e-09 Score=73.29 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHh
Q 014118 384 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 422 (430)
Q Consensus 384 ~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~ 422 (430)
++..++|++|++|||+++.|++|+.+|++|.+.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 455678999999999999999999999999999999997
No 131
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.81 E-value=3.4e-09 Score=81.98 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHcCC-CHHHHHHHHhhcCCCCC
Q 014118 388 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 429 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aCdk-Ne~~Aan~L~~~~~d~~ 429 (430)
++|++|++|||+|+.|++|+.+|+. |.|.|++|||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5799999999999999999999996 99999999999887754
No 132
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.80 E-value=3.4e-09 Score=84.06 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=43.0
Q ss_pred cccChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCC
Q 014118 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426 (430)
Q Consensus 380 i~lt~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~ 426 (430)
.+.+++..++|++|++|||+|+.|++|+.+|++|.+.|++|||++..
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 46777888899999999999999999999999999999999998643
No 133
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.4e-09 Score=83.65 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCC-CHHHHHHHHhhcCCCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 429 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdk-Ne~~Aan~L~~~~~d~~ 429 (430)
+.++|++|++|||+|+.|++|+++|+. |.|.|++|||++..|.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 456799999999999999999999995 89999999999877654
No 134
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.79 E-value=5.8e-09 Score=88.55 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
.+++.|++|++|| | +|+++++||+++++|++||||||++|.+
T Consensus 65 ~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 4789999999999 9 7899999999999999999999999854
No 135
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=4.7e-09 Score=85.28 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 429 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~~ 429 (430)
+.++|++|++|||+|+.|++|+++|++|.+.|++|||++..|.+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 55779999999999999999999999999999999999877643
No 136
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.79 E-value=2.9e-09 Score=82.39 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHc-CCCHHHHHHHHhhcCCCCC
Q 014118 388 EAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 429 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aC-dkNe~~Aan~L~~~~~d~~ 429 (430)
++|++|++|||+|..|++|+++| ++|.+.|++|||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999 7999999999999877644
No 137
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.75 E-value=9.1e-09 Score=75.44 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 383 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 383 t~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
.++..++|++|++|||+|+.|+.|+.+|++|.+.|++|||++
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 355678899999999999999999999999999999999986
No 138
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.74 E-value=9e-09 Score=78.25 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=44.6
Q ss_pred cccChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCC
Q 014118 380 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 426 (430)
Q Consensus 380 i~lt~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~ 426 (430)
.-|++.|.++|+.|++|||++++|+.|.-+|+.|.|.|++|||+|+.
T Consensus 13 ~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 13 QMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 45999999999999999999999999999999999999999999864
No 139
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.71 E-value=5.7e-09 Score=80.77 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHcCC-CHHHHHHHHhhcCCCC
Q 014118 388 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEF 428 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aCdk-Ne~~Aan~L~~~~~d~ 428 (430)
++|++|++|||+|+.|++|+++|++ |+|.|.||||++..|.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 4699999999999999999999975 9999999999998764
No 140
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.71 E-value=1.1e-08 Score=81.11 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCC
Q 014118 382 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428 (430)
Q Consensus 382 lt~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~ 428 (430)
.++.+.++|++|++|||+|+.|++|+.+|++|.+.|++|||++..|.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 34456678999999999999999999999999999999999987654
No 141
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.70 E-value=1.4e-08 Score=82.88 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 173 e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
++.|++|++|| |+|++|++||++.++|+++|+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 88999999999 999999999999999999999999986
No 142
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.3e-09 Score=80.11 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 428 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d~ 428 (430)
+.+.|++|++|||+|+.|++|+.+|++|.+.|++|||++..|.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 4567999999999999999999999999999999999986553
No 143
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.69 E-value=1.9e-08 Score=74.02 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
+.|++|++|||+|+.||+|...|+.|.|+|+|+|+|-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 6799999999999999999999999999999999984
No 144
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.5e-08 Score=73.46 Aligned_cols=39 Identities=31% Similarity=0.572 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
+.+.|++|++|||+++.|++|+.+|+ |.|.|++|||+++
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 34679999999999999999999996 9999999999874
No 145
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.66 E-value=9.1e-08 Score=82.18 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|+|+|++.+|+.+.+.|..++++..|++..+++.| ++...+||+|.|+.|.++.|.+++++.++++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46888888899899999999999999999999999 89999999999999999999999999999999999754
No 146
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.66 E-value=1.9e-08 Score=81.83 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHc-CCCHHHHHHHHhhcCCCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 429 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aC-dkNe~~Aan~L~~~~~d~~ 429 (430)
+.++|++|++|||+|..|++|+++| ++|.+.|++|||++..|.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 5578999999999999999996655 6899999999999877643
No 147
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.65 E-value=5.3e-09 Score=76.11 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.5
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 014118 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GI 214 (430)
+.++.|++|++|| |+|.+|++||.+..+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999874
No 148
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.63 E-value=3.8e-08 Score=73.03 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 387 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 387 ~~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
.+.|++|++||| +|+.+++|+.+|++|.+.|++|||+++
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 367999999999 999999999999999999999999863
No 149
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.60 E-value=4.2e-08 Score=72.49 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
+.|++|++|||+|+.||+|.-.|+.|.|+|+|+|++..
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44999999999999999999999999999999999853
No 150
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.59 E-value=5.8e-08 Score=72.27 Aligned_cols=39 Identities=28% Similarity=0.472 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 387 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 387 ~~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
.+.|++|++||| +|+.+++|+.+|++|.+.|++|||++.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 456999999999 999999999999999999999999864
No 151
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.57 E-value=6.4e-08 Score=71.17 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
.+..|++||+|| |+|++|++||+.+.||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367999999999 99999999999999999999999873
No 152
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.52 E-value=1.1e-07 Score=77.20 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
..+.|++|++|||+|+.|++|+.+|+.|.+.|++|||++..+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 346799999999999999999999999999999999997653
No 153
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=1.2e-07 Score=70.01 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
.|..|..||+|| |+|++|++||+.+.||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356799999999 99999999999999999999999974
No 154
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.48 E-value=9.8e-08 Score=82.36 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=37.7
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
++.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 75 ~~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3567899999999 999999999999999999999999987
No 155
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.42 E-value=3.3e-07 Score=65.47 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 169 g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
|+.+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999873
No 156
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.42 E-value=7.1e-07 Score=83.53 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~~ 80 (430)
|+|+|+ .+|+.+.+.|..++++..||+..+++.| ++..++||+|.|+.|.++.|.+++++.++++|.|+....+..
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467887 4888999999999999999999999999 999999999999999999999999999999999999876654
No 157
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.40 E-value=3e-07 Score=68.10 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 385 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 385 ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
.=.+.|.+|++|||+|+.|++|...|+.|.|+|.|+|+|-
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3346799999999999999999999999999999999974
No 158
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.38 E-value=4.2e-07 Score=65.76 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=34.1
Q ss_pred HHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 388 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 388 ~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
+.|++|++||| +|+.+++|+.+|+.|.+.|++|||++
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 56999999999 58889999999999999999999974
No 159
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.37 E-value=2.5e-07 Score=74.34 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=58.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCee---c--CCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKi---L--~Dd~tLsdygI~e~stI~vm 73 (430)
|.|.||+.+| .+.|+|++++||.+||++|.+..+ ++.+.|.|.++-.. | .++.+|+++||+.|++|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6789998777 678999999999999999999999 88888877655443 3 47889999999999999874
No 160
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.1e-07 Score=83.75 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+|+ .+|+.+.+.|..++++..|++..+++.| ++...+||+|.|+.|.++.|.+++++.++++|.|++...+.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 467776 4888999999999999999999999999 89999999999999999999999999999999999877654
No 161
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.30 E-value=6.8e-07 Score=66.22 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=36.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
.|..|..||+|| |+|+.|++||+.+-||.+-|-..|+.=
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 578999999999 999999999999999999999999854
No 162
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.30 E-value=7.8e-07 Score=70.64 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 387 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 387 ~~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
.+.|++|++||| +|+.+++|+.+|+.|.+.|++|||++...
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 456999999999 79999999999999999999999987543
No 163
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.29 E-value=7.4e-07 Score=67.57 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 387 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 387 ~~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
.+.|++|++||| +|+.+++|+.+|+.|.+.|++|||++.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 457999999999 688999999999999999999999864
No 164
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.27 E-value=1.1e-06 Score=65.75 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHcCCCHHHHHHHHhhcCC
Q 014118 387 REAIERLEAMGFD-RALVLEVFFACNKNEELAANYLLDHMH 426 (430)
Q Consensus 387 ~~aI~rL~~lGF~-r~~viqAy~aCdkNe~~Aan~L~~~~~ 426 (430)
.+.|++|++|||+ ++.+++|+.+|+.|.+.|++|||++..
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4569999999995 456799999999999999999998754
No 165
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=62.75 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 387 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 387 ~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
..+|.+|+.+||+|+.|++|..-|..|.|+|.|.|++.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 35799999999999999999999999999999999975
No 166
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.20 E-value=1.1e-06 Score=82.07 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.1
Q ss_pred ccCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 167 ~~g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
..+..+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34667899999999999 99999999999999999999999985
No 167
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.15 E-value=1.9e-06 Score=80.42 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=58.2
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCCcccccccCCCcccccChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHH
Q 014118 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417 (430)
Q Consensus 338 ~nP~l~~lI~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~lt~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~A 417 (430)
-|++..++...|.+.|.+...+-... -+.. -...++-.+.|++|++|||+|+.|++|+..|++|++.|
T Consensus 127 ~n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~~----~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A 194 (201)
T 3k9o_A 127 QDAVVANQYKQNPEMFKQTARLWAHV--------YAGA----PVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA 194 (201)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHCC----CCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHH--------hccc----ccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 47889999999999999886543211 0000 01133446789999999999999999999999999999
Q ss_pred HHHHhhc
Q 014118 418 ANYLLDH 424 (430)
Q Consensus 418 an~L~~~ 424 (430)
.++||++
T Consensus 195 ~e~L~~~ 201 (201)
T 3k9o_A 195 TELLLSN 201 (201)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 168
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.12 E-value=1.3e-05 Score=63.95 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=64.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~-~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
.+.+|+.+...+.+.|.++.+|.+|-+.-+.+.| ++.+ .++|.|.|..|..+.++.+|.+.+++.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567777777899999999999999999999999 9999 99999999999999999999999999999985
No 169
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.10 E-value=3.8e-06 Score=70.57 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 014118 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (430)
Q Consensus 170 ~~~e~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP~ 216 (430)
.++++.|+.||+| | |++++|+.||.-+.++.++|++||+.|.|+
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3568999999999 9 999999999999999999999999999884
No 170
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.07 E-value=4.8e-06 Score=64.80 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 387 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 387 ~~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
...|++|++||| +|+.+++|..+|+.|.+.|++|||++..+
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 457999999998 56677999999999999999999998654
No 171
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.04 E-value=6.3e-07 Score=84.21 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
|+|+| +.+|+.+.+.|..++++..||+..+++.| +++..+|++|.|+.|.++.|.+++++++|++|.|+....+.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 56777 66888889999999999999999999999 89999999999999999999999999999999999876654
No 172
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.98 E-value=2.9e-05 Score=64.64 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk-~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
++|+|+.-+|+ .+.+.|..++++..|....+++.| ++....|++|.|..|..+.|..++++.++++|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777784 788999999999999999999999 88999999999999999999999999999999886
No 173
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.87 E-value=1.2e-05 Score=59.94 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f-~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+.|...+.+|.+|| | +++..++||+...+|.++||+.|+.+
T Consensus 7 e~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 7 GQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp TTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 55788999999999 9 99999999999999999999999975
No 174
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.86 E-value=1.4e-05 Score=77.31 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCCcccccccCCCcccccChHHHHHHHHH
Q 014118 314 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 393 (430)
Q Consensus 314 f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~lt~ee~~aI~rL 393 (430)
+..|+.++. +|..-. --|++.+++...|.+.|.+...+-... -+.. . ...++-.+.|++|
T Consensus 163 L~sI~~ll~-~pnp~~-------Pln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~~---~-~~~~~~~~~v~~l 222 (253)
T 3e46_A 163 LLSLQALLA-AAEPDD-------PQDAVVANQYKQNPEMFKQTARLWAHV--------YAGA---P-VSSPEYTKKIENL 222 (253)
T ss_dssp HHHHHHHHH-SCCTTS-------CSCHHHHHHHHHCHHHHHHHHHHHHHH--------HHCC---S-CCCHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCC-------hhhHHHHHHHHHCHHHHHHHHHHHHHH--------hccc---c-cCcchHHHHHHHH
Confidence 445555553 454322 347889999999999999887543211 0000 0 1134556789999
Q ss_pred HHcCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 394 EAMGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 394 ~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
++|||+|+.|++|+-.|++|++.|.++||++
T Consensus 223 ~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 223 CAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999974
No 175
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=97.84 E-value=1.7e-05 Score=67.32 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 387 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 387 ~~aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
.+.|++|++||| +|+.+++|+.+|+.|.+.|++|||++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 467999999999 678999999999999999999999864
No 176
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.80 E-value=1.5e-05 Score=72.72 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=38.3
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
++.++.|++|++|| |+|+.|++|+.++.+|.+.|++||+.+
T Consensus 128 pee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44678999999999 999999999999999999999999976
No 177
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.78 E-value=3.8e-05 Score=64.55 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHc-CCChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 385 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 385 ee~~aI~rL~~l-GF~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
+-.+.|++|++| ||+++.|+.|+..|++|.+.|+++||+...|
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 335679999999 9999999999999999999999999987643
No 178
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.72 E-value=0.00011 Score=60.85 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeec--CCcCchhhccc-CCCcEEEEEE
Q 014118 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL--KDVTTLEENKV-AENSFVVVML 74 (430)
Q Consensus 3 I~VKtl-~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL--~Dd~tLsdygI-~e~stI~vmv 74 (430)
|+|=.+ +++.+++.|.+++||..||++|++++| +++++|+|||.||.| +..+.-..|-- .+..-|+|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 445444 456789999999999999999999999 999999999999876 44555555533 3345555554
No 179
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.69 E-value=7.4e-05 Score=70.05 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=67.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
+|+|++ +++.+.+.|..++++..||+..+++.| ++.+++|++|.|+.+.+++|-.++.+.++++|.++..+.+.
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 577776 777888999999999999999999999 99999999999999999999999999999999999776553
No 180
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.61 E-value=0.00025 Score=58.73 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=66.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
++|+|+. +|..+.+.|..++....|.+..+.+.| +.++..|++|.|..+.++.|-.++++.++++|-+++.+
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 4678884 788889999999999999999999999 88999999999999999999999999999999999864
No 181
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.61 E-value=2.8e-05 Score=78.98 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
..++|.+|++|||+|+.|+.|..+|++|.+.|++|||++..|
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 456799999999999999999999999999999999987554
No 182
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.55 E-value=0.00012 Score=58.96 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=59.4
Q ss_pred EEEEEe--CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCcEEEeCCeecCCcCchhhcccCCCcEEEE
Q 014118 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 2 kI~VKt--l~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~---~~QkLIy~GKiL~Dd~tLsdygI~e~stI~v 72 (430)
+|+|.. ..++.|.+.++...||+.|++.+.+.++-+ .+. ...|+.-+|.+|.+++.|.+|+|++|+.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566764 578999999999999999999999998843 221 2458889999999999999999999999876
No 183
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.47 E-value=0.00019 Score=62.61 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=56.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------------------------------------Cc
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~-------------------------------------~Q 44 (430)
.|+|+.++|...++.|+.+.||.+++..|+.+.| ++.. ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3899999999999999999999999999999999 5533 44
Q ss_pred EEEe--CCeecCCcCchhhcccCCCcEEEE
Q 014118 45 MLIH--QGKVLKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 45 kLIy--~GKiL~Dd~tLsdygI~e~stI~v 72 (430)
||-. .+.-|+++++|.++||.++++|.|
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 4422 236688899999999999999655
No 184
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.47 E-value=1.7e-05 Score=80.17 Aligned_cols=75 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
++|+|++ +|+.+.+.|..++++..|++..+++.| ++.+.+|++|.|+.|.++.|.+++++++|++|.|+....+.
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 3567776 677788999999999999999999999 89999999999999999999999999999999999875543
No 185
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.46 E-value=0.00014 Score=53.82 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=35.1
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHH
Q 014118 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLY 211 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV~~ALrAafn-NpdRAVEyL~ 211 (430)
...++++.|++|| |+++-|++||+.+-| ..+-|+|||.
T Consensus 8 vn~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 8 VNRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CCHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3468999999999 999999999999988 7999999996
No 186
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.41 E-value=0.00053 Score=56.22 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
|.|+|-..+++.+.|.|.++.++.++-+..++++| +.+++-.|.|++|.|+-+..+.-.||.+|..|.++.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 67999999999999999999999999999999999 88889999999999988999999999999999998544
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.21 E-value=5e-05 Score=77.08 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEecCCC
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k~k~ 79 (430)
.|+|++ +++...+.|..++++..||+..+++.| ++..+++++|.|+.|.++.|.++++++++++|.++....+.
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 466666 677778999999999999999999999 99999999999999999999999999999999999876653
No 188
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.17 E-value=0.00035 Score=67.49 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=40.2
Q ss_pred ccCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 167 ~~g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
+.+.+|++.|++|++|| |+|++|+.||+....|.++|+|||+.
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34668999999999999 99999999999999999999999985
No 189
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.05 E-value=0.00047 Score=51.31 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=35.6
Q ss_pred HHHHHHHcCC-ChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 389 AIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 389 aI~rL~~lGF-~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
.+++|.+||| +++.-++|...|+.|.+.|++.|++....
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 4889999999 99999999999999999999999976543
No 190
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.99 E-value=0.0027 Score=50.73 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=57.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC---CcCchhhcccCCCcEEEEE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GKiL~---Dd~tLsdygI~e~stI~vm 73 (430)
+|.||..+|+.+.-.+..++||.+|...|.. .+ ++....+|+ |-.|.|. .+++|.++|+....+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 6889999999888888999999999999987 56 567788887 5578883 4789999999988888764
No 191
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.0024 Score=71.34 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 388 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 388 ~aI~rL~~lGF~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
+.|..|.+|||++..+++|+.+|+.|.+.|++|||++..|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 4488899999999999999999999999999999997654
No 192
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.73 E-value=0.013 Score=49.38 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=58.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC--C-cCchhhcccCCCcEEEEEE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVML 74 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GKiL~--D-d~tLsdygI~e~stI~vmv 74 (430)
+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|+++|+....+|+|..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 6899999999999999999999999999999877 555677776 5688886 3 6899999999887776654
No 193
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.07 E-value=0.0013 Score=62.10 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=19.4
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCCcccccccCCCcccccChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHHHH
Q 014118 338 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 417 (430)
Q Consensus 338 ~nP~l~~lI~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~lt~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~~A 417 (430)
-|++..++..+|.+.|.+...+-...-.. . ... .+-.+.|+||++|||+++.++.|+-.|++|++.|
T Consensus 142 ln~eaa~~~~~d~~~f~~~ar~~t~~ya~--------~--~~~---~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~ 208 (216)
T 2pwq_A 142 QDAEVAKMYKENHALFVKTASVWTKTFAT--------G--PKE---EPREVIIKKITEMGFSEDQAKNALIKANWNETLA 208 (216)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHHSC--------C--C---------------------------------------
T ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHhcC--------C--Ccc---cchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHH
Confidence 47888999999999999876543210000 0 000 1224679999999999999999999999999999
Q ss_pred HHHHhhc
Q 014118 418 ANYLLDH 424 (430)
Q Consensus 418 an~L~~~ 424 (430)
++.||+.
T Consensus 209 ~~~l~~~ 215 (216)
T 2pwq_A 209 LNTLLEN 215 (216)
T ss_dssp -------
T ss_pred HHHHhcC
Confidence 9999964
No 194
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.98 E-value=0.016 Score=49.89 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=57.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeec--CC-cCchhhcccCCCcEEEEE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVM 73 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GKiL--~D-d~tLsdygI~e~stI~vm 73 (430)
+|.||..+|+.+.-.+..++||.+|...|... + ++....+|+ |-.|.| .| +++|.++|+.....|+|.
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 68999999998888999999999999999876 6 666778887 568888 34 789999999988777765
No 195
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.98 E-value=0.0069 Score=45.82 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=37.0
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 172 ~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
.|+.|..|.+| . ++++.|+..|++..||.|+|++.|+.-
T Consensus 9 ~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 58999999999 7 899999999999999999999999976
No 196
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.48 E-value=0.019 Score=41.86 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=36.3
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 172 ~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
-+..|+.|+|| . -++++|+++|+++.+|.|||+..|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 5 699999999999999999999999987
No 197
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.44 E-value=0.019 Score=43.30 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=35.0
Q ss_pred HHHHHHHHc--CCChhHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 014118 388 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMHE 427 (430)
Q Consensus 388 ~aI~rL~~l--GF~r~~viqAy~aCdkNe~~Aan~L~~~~~d 427 (430)
++|+.|++| ++++..+..+|.+|+.|.+.|.|.||+-.++
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 458889999 6789999999999999999999999986544
No 198
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.37 E-value=0.1 Score=43.60 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=56.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC--CcCchhhcccCCCcEEEEE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--DVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GKiL~--Dd~tLsdygI~e~stI~vm 73 (430)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |=.|.|. .++||+++||....+|+|-
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 68999999998888889999999999999865 4 446677886 5578886 3789999999988777664
No 199
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.33 E-value=0.031 Score=43.31 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=39.2
Q ss_pred cCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 168 AGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 168 ~g~~~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
.+.++++.|..|.+| - ++++-|+..|++.-+|.|+||+-|+.-
T Consensus 14 ~~~~~~~~v~~L~~MFP~---lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPN---MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHCSS---SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456789999999999 6 899999999999999999999999864
No 200
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.30 E-value=0.003 Score=59.58 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCC
Q 014118 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GI 214 (430)
++++.|+++++|| |+|++|++||+...-+.++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4588999999999 9999999999999999999999999884
No 201
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.26 E-value=0.06 Score=46.42 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=53.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecCC-cCchhhcccCCCcE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSF 69 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GKiL~D-d~tLsdygI~e~st 69 (430)
+|.||..+|+.+.-.+..++||.+|...|...... +......|+ |-.|.|.| ++||+++|+....+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 58999999999988999999999999999886321 445667776 56889976 68999999987433
No 202
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.04 E-value=0.062 Score=42.08 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=43.7
Q ss_pred ccCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCC
Q 014118 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219 (430)
Q Consensus 167 ~~g~~~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G-IP~~~~ 219 (430)
+.+.+.+..|.+|.++ - +....|.++|..-.+|+|+.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4667899999999998 5 679999999999889999999999999 776643
No 203
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=94.98 E-value=0.02 Score=53.82 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=51.3
Q ss_pred hhCHHHHHHHHHcHHHHHHHhcCCCCCCC-CCcccccccCCCcccccChHHHHHHHHHHHcCCChhHHHHHHHHcCCCHH
Q 014118 337 KQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 415 (430)
Q Consensus 337 ~~nP~l~~lI~~n~~~Fl~~l~~~~~~~~-g~~~~~~~~~~~~~i~lt~ee~~aI~rL~~lGF~r~~viqAy~aCdkNe~ 415 (430)
-.|++..++...|.+.|.+...+-...-. +...+.. +. -....+-..|.+.|+||++|||+++.|++|+--|+.+++
T Consensus 121 Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~-~~-~~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~ 198 (215)
T 1tte_A 121 PQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQK-GN-VEESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSL 198 (215)
T ss_dssp CSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSS-CC-CSCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSC
T ss_pred ccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccc-cc-hhhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 45788889999999999887543211000 0000000 00 012334556778999999999999999999999999874
No 204
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.021 Score=63.72 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
...++.|..|++|| |+++++++||++..||.+|||+||++.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34578999999999 999999999999999999999999986
No 205
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.69 E-value=0.11 Score=42.02 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe---CCeecCCcCchhhcccCCCcEEEEEEecC
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~GKiL~Dd~tLsdygI~e~stI~vmv~k~ 77 (430)
++.|.....++..+.|++..++.+|--.|+++.. +.++.-.|.. .+..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5677777788889999999999999999999987 8788888864 456788899999999997 66665544
No 206
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.31 E-value=0.12 Score=40.34 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
|+|+||........+++....||.+|-++ .| ++++..-+..+|+++..+. +.+|+.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 99999977555566899999999998654 56 8888888889999997665 2347888775
No 207
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.84 E-value=0.088 Score=40.39 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 014118 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (430)
Q Consensus 173 e~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~ 211 (430)
.+.|..|.++ | ....+|..||..+.+|.+.|++||-
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3689999997 8 9999999999999999999999996
No 208
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.43 E-value=0.37 Score=40.77 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=46.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe----CCeecCCc-------------CchhhcccCC
Q 014118 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (430)
Q Consensus 10 gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip------~~~QkLIy----~GKiL~Dd-------------~tLsdygI~e 66 (430)
+..+.+.|-.-+||.++|+||-...-+. .| ++++.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3457788888999999999998765332 33 35666765 25677662 3789999999
Q ss_pred CcEEEEEE
Q 014118 67 NSFVVVML 74 (430)
Q Consensus 67 ~stI~vmv 74 (430)
|.+|.++.
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 209
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.99 E-value=0.48 Score=36.21 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=45.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+|..-. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++|+.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 567776432 23456778788999998875 4 5567777889999997665 578899998873
No 210
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.29 E-value=0.41 Score=41.95 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=47.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe----CCe-ecCCc-------------CchhhcccCC
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip------~~~QkLIy----~GK-iL~Dd-------------~tLsdygI~e 66 (430)
..+.+.|-.-|||.++|+||-...-+. +| +++.-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457788888999999999999886543 44 33455655 244 47653 2899999999
Q ss_pred CcEEEEEEec
Q 014118 67 NSFVVVMLTK 76 (430)
Q Consensus 67 ~stI~vmv~k 76 (430)
|.+|.++.+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887553
No 211
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.19 E-value=0.52 Score=43.91 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=50.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEE--Ee-CC--eecCC-cCchhhcccCCCcEEEEEEec
Q 014118 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQML--IH-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~-~QkL--Iy-~G--KiL~D-d~tLsdygI~e~stI~vmv~k 76 (430)
+++.++..+||.+|+++++...+ ++.+ +.|| +| .+ ..|.| +++|.+++|.++..|+|=++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 6888 34 23 34665 679999999999999887764
No 212
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.15 E-value=0.32 Score=37.38 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=41.8
Q ss_pred cccChHHHHHHHHHHHc-C-CChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 380 VTVTPEEREAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 380 i~lt~ee~~aI~rL~~l-G-F~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
-.||.+..+.|...+++ | -+...+++..-+|+||-+.|++..|++.
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 47899999999999998 8 7888999999999999999999999863
No 213
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.03 E-value=0.74 Score=43.31 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=50.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEE--eC---CeecCC-cCchhhcccCCCcEEEEEEecC
Q 014118 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--HQ---GKVLKD-VTTLEENKVAENSFVVVMLTKS 77 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~-~QkLI--y~---GKiL~D-d~tLsdygI~e~stI~vmv~k~ 77 (430)
+++.++..+||.+|+++++...+ ++.+ +.||- |. ...|.| +.+|.+++|.++..|.|=++.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 55778999999999999999999 8887 68884 32 235665 6899999999999988877643
No 214
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.47 E-value=1.1 Score=36.25 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=48.4
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCC--CCC------CCCCcEEEeCCeecCCcCchhhcccC
Q 014118 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (430)
Q Consensus 1 MkI~VKtl~------g-k~~~IeV~~s~TV~dLK~kI~~~~g~--~~i------p~~~QkLIy~GKiL~Dd~tLsdygI~ 65 (430)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..||+.... ++-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888764 4 45678888889999999999876421 000 0234567789988763 56788
Q ss_pred CCcEEEEE
Q 014118 66 ENSFVVVM 73 (430)
Q Consensus 66 e~stI~vm 73 (430)
+|+.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998886
No 215
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.44 E-value=0.38 Score=36.27 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=41.6
Q ss_pred ccccChHHHHHHHHHHHc-CCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 379 AVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 379 ~i~lt~ee~~aI~rL~~l-GF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
...+++...+.|...+++ |-++..+++-.-+|+||-+.|++..|++.
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 346788888899999997 89999999999999999999999999764
No 216
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.69 E-value=0.67 Score=35.59 Aligned_cols=65 Identities=6% Similarity=0.187 Sum_probs=45.3
Q ss_pred CEEEEEeCCC-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKG-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~g-k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~--~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
|+|+||.+.. +.-.+++ ...||.+|++.+....+ +.. ....+..||+.+.+ .+.-+++|+.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 8899997754 1134666 56899999999976533 221 45667788888543 24568899999887
No 217
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.47 E-value=0.37 Score=37.19 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHc--CCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 387 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 387 ~~aI~rL~~l--GF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
.++++.|++| .+++..+..++.+|+.|.+.|.+-|++-
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4679999999 4568999999999999999999999963
No 218
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.76 E-value=0.28 Score=36.23 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHc-CCCHHHHHHHHhhcC
Q 014118 386 EREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHM 425 (430)
Q Consensus 386 e~~aI~rL~~lGF~r~~viqAy~aC-dkNe~~Aan~L~~~~ 425 (430)
-+.-++.|.+||||++.|..|.-.. +|..+-|..||..-.
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 3455899999999999999998765 468999999998643
No 219
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=89.74 E-value=0.91 Score=45.14 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=54.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC-CCCCCCcEEEe------CCeecCCcCchhhcccCCCcEEEEEE
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~-~ip~~~QkLIy------~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
.++|... +.+.++.++++.||.++..+|.++.... ..+.++--|.. +|+=|+++++|+.|++.+++.|....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455544 6677899999999999999998887520 12456667766 45668999999999999999887753
No 220
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=89.39 E-value=0.61 Score=32.52 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHc-CCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 386 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 386 e~~aI~rL~~l-GF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
..+.|...+++ |.++..+++-.-+|++|-+.|.+..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679998887 89999999999999999999999988764
No 221
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=88.99 E-value=1.7 Score=37.56 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe-C---Ce-ecCCc-------------CchhhcccC
Q 014118 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH-Q---GK-VLKDV-------------TTLEENKVA 65 (430)
Q Consensus 10 gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip------~~~QkLIy-~---GK-iL~Dd-------------~tLsdygI~ 65 (430)
+..+.+.|-.-+||.++|+||-...-+. +| ++++.|-| . |+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4457788888999999999998775432 44 35667766 3 33 36652 378999999
Q ss_pred CCcEEEEEEe
Q 014118 66 ENSFVVVMLT 75 (430)
Q Consensus 66 e~stI~vmv~ 75 (430)
+|.+|.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 222
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.33 E-value=1.2 Score=37.90 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=45.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe-CC---e-ecCCc-------------CchhhcccCCC
Q 014118 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH-QG---K-VLKDV-------------TTLEENKVAEN 67 (430)
Q Consensus 12 ~~~IeV~~s~TV~dLK~kI~~~~g~~~ip------~~~QkLIy-~G---K-iL~Dd-------------~tLsdygI~e~ 67 (430)
.+.+.|-.-+||..+|+||-...-+. .| ++++.|-| .| + +|.|. .||..|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 46777878999999999998765332 44 34556655 33 3 45541 37899999999
Q ss_pred cEEEEEEec
Q 014118 68 SFVVVMLTK 76 (430)
Q Consensus 68 stI~vmv~k 76 (430)
.+|.++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999987543
No 223
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=86.54 E-value=3.3 Score=41.12 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCCcccccccCCCcccccChHHHHH-HH
Q 014118 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IE 391 (430)
Q Consensus 313 ~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~lt~ee~~a-I~ 391 (430)
....+..+|..+|.+|.-=+.. |..+= +|++-|+-.... ....-...|..+.++.+.... +.
T Consensus 91 s~e~V~kiL~k~P~lL~~s~e~-----------L~~~l-~fL~~lGl~~~~-----i~~ll~~~P~lL~~s~e~i~~~v~ 153 (335)
T 4fp9_B 91 NPEPVCVVLKKSPQLLKLPIMQ-----------MRKRS-SYLQKLGLGEGK-----LKRVLYCCPEIFTMRQQDINDTVR 153 (335)
T ss_dssp CHHHHHHHHHHCGGGGGSCHHH-----------HHHHH-HHHHHTTCTTTT-----HHHHHHHCGGGGTSCHHHHHHHHH
T ss_pred CHHHHHHHHHhChhhccCCHHH-----------HHHHH-HHHHHcCCCHHH-----HHHHHHhCchhhccChHHHHHHHH
Confidence 3457777888888877633332 22222 444444332110 000001123456677776544 44
Q ss_pred HH-HHcCCChhHHHHHHHHcC-------CCHHHHHHHHhhcC
Q 014118 392 RL-EAMGFDRALVLEVFFACN-------KNEELAANYLLDHM 425 (430)
Q Consensus 392 rL-~~lGF~r~~viqAy~aCd-------kNe~~Aan~L~~~~ 425 (430)
-| ..+||+++.|..+...|= .+-+--.+||...|
T Consensus 154 ~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 154 LLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp HHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 45 478999999999988872 33444555665544
No 224
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=86.45 E-value=0.51 Score=42.26 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=33.1
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 014118 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~ 211 (430)
...+.|.+|++.| -|+|++|+.||+++-+|.++|+--|-
T Consensus 101 ~R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 101 TRRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3456788999999 44999999999999999999997663
No 225
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.98 E-value=4.6 Score=31.60 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=41.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC----------CCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP----------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip----------~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
+...+++....||.+|++.+...... +. .....+..||+.... ++-+++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56788888888999999999877531 10 023577789988865 4568889999887
No 226
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=85.57 E-value=0.96 Score=32.77 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHHHHHHc--CCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 387 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 387 ~~aI~rL~~l--GF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
.+.++.|.+| .-++..+..++.+|+.|.+.|.+.|++..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4668999999 57799999999999999999999999753
No 227
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=84.97 E-value=2.3 Score=34.24 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=52.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 14 ~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
...++-..++..||+.++.+.| +.-+.-.+...+..|+++++|.+-+|+-...|.+.+.-
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3456667789999999999999 77888899889999999999999999988888887754
No 228
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=84.39 E-value=0.67 Score=33.97 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.1
Q ss_pred chHHHHHHHHHcCCCCCCHHHH--HHHHHHhcCChHHHHHHHH
Q 014118 171 NLEATVQQILDMGGGSWDRETV--IRALRAAYNNPERAVEYLY 211 (430)
Q Consensus 171 ~~e~~V~~i~eMG~~~f~reqV--~~ALrAafnNpdRAVEyL~ 211 (430)
..++.|.+|++|| |+-+-- .+.|.+..+|-.+|++-|-
T Consensus 9 rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 9 RLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 4789999999999 976654 6999999999999999873
No 229
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=83.44 E-value=1.9 Score=34.76 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=40.9
Q ss_pred EEEEeC-CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE-eCCe----ecCCcCchhhcccCCCcEEEE
Q 014118 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGK----VLKDVTTLEENKVAENSFVVV 72 (430)
Q Consensus 3 I~VKtl-~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~GK----iL~Dd~tLsdygI~e~stI~v 72 (430)
++||.. ++-.|-|.|..+.+..+||.||..+.. + +...|+ |++. .|.++..|.. -|..++.|.|
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l 82 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISV 82 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEE
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEE
Confidence 344433 566899999999999999999999987 4 555554 4443 3333333332 2444555544
No 230
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=82.31 E-value=1.6 Score=36.76 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=43.9
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCcHHHHHHHHHHHhCCCCCCCCCcEEEe-CCe------ecCCcCch---
Q 014118 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIH-QGK------VLKDVTTL--- 59 (430)
Q Consensus 1 MkI~VKtl~------g--k~~~IeV~~---s~TV~dLK~kI~~~~g~~~ip~~~QkLIy-~GK------iL~Dd~tL--- 59 (430)
|+|+|+... | +.++|+++. ..||.+|...|.+.+. ..+.+|+. +|+ +|-++..+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678888664 3 356788873 3699999999877752 33434432 232 33344322
Q ss_pred --hhcccCCCcEEEEEEe
Q 014118 60 --EENKVAENSFVVVMLT 75 (430)
Q Consensus 60 --sdygI~e~stI~vmv~ 75 (430)
.++-+++++.|.++-.
T Consensus 87 ~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIST 104 (114)
T ss_dssp CTTTCBCCSSEEEEEEEC
T ss_pred CCcCcCCCCCCEEEEeCC
Confidence 3567999999888643
No 231
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.15 E-value=2.3 Score=34.03 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=38.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G 50 (430)
|+|+|.. .-++.|.|.++.+..+|+.+|.++.+ ++.+..+|-|+-
T Consensus 6 ~~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 3455554 36888999999999999999999999 888999999975
No 232
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=81.14 E-value=3.1 Score=33.34 Aligned_cols=44 Identities=9% Similarity=0.286 Sum_probs=37.2
Q ss_pred ccChHHHHH----HHHHHH-cC--CChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 381 TVTPEEREA----IERLEA-MG--FDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 381 ~lt~ee~~a----I~rL~~-lG--F~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
+|++.|++. ++.+.+ || .++...++|-+.||=|.+.|.|++|+.
T Consensus 25 ~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 25 QLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 589988876 444554 47 999999999999999999999999964
No 233
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=80.96 E-value=2.7 Score=33.81 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=41.1
Q ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 8 l~gk~~~IeV~~s-~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
++|+. ++++.. .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++|+.|-++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 34654 455665 8999998865 4 566777888999998543 34456789999998874
No 234
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=80.57 E-value=4.1 Score=32.24 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=44.6
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCcHHHHHHHHHHHhCC--CCC-C-------CCCcEEEeCCeecCCcCchhhccc
Q 014118 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGS--DVY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (430)
Q Consensus 1 MkI~VKtl~------gk~~~IeV~~s~TV~dLK~kI~~~~g~--~~i-p-------~~~QkLIy~GKiL~Dd~tLsdygI 64 (430)
|+|+|+... |+...++++ ..||.+|++.+..++.. ..+ . .....+..||+...+..- .++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 788888653 433346654 57999999999877531 000 0 113566678887654222 24568
Q ss_pred CCCcEEEEEE
Q 014118 65 AENSFVVVML 74 (430)
Q Consensus 65 ~e~stI~vmv 74 (430)
++|+.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998873
No 235
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=78.47 E-value=7.3 Score=36.96 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=53.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCcEEEe---CCe--ecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH---QGK--VLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~-~~QkLIy---~GK--iL~Dd~tLsdygI~e~stI~vmv 74 (430)
|.|.|..++| ++.+.|+.+.|+.+|-+.|+...| +.. +-.-|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688998888 688999999999999999999999 533 2334544 343 36778888887766666666655
Q ss_pred ecC
Q 014118 75 TKS 77 (430)
Q Consensus 75 ~k~ 77 (430)
+++
T Consensus 78 r~k 80 (294)
T 1ef1_A 78 RAK 80 (294)
T ss_dssp EES
T ss_pred EEE
Confidence 544
No 236
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=78.24 E-value=3 Score=31.79 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred ccChHHHHHHHHHHHc-CCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 381 TVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 381 ~lt~ee~~aI~rL~~l-GF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
.+|.+. |..|.+. |.+..+|.+|+..||.|.+.|..||-++
T Consensus 7 ~it~~~---Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 7 GSSKEL---LMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCCHH---HHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345444 7788775 9999999999999999999999999764
No 237
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=77.59 E-value=4.1 Score=30.44 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=41.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-+++++.|-++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788998778876 456678999999888743332 1122234688876554 4455677777764
No 238
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=77.28 E-value=2.7 Score=31.35 Aligned_cols=61 Identities=7% Similarity=0.202 Sum_probs=42.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++|+.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55554 46644 556778999998876 4 556777788999988542 23345688999988873
No 239
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.06 E-value=8.2 Score=37.09 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=53.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCcEEEe--CCe--ecCCcCchhhcccCCCcEEEEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~-~~QkLIy--~GK--iL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|.+.|..++| ++.+.|+.+.|+.+|-+.|+...| +.. +-.-|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3578888898 788999999999999999999999 542 2334444 443 277788898877666665555555
Q ss_pred cC
Q 014118 76 KS 77 (430)
Q Consensus 76 k~ 77 (430)
++
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 240
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=75.95 E-value=3.3 Score=31.96 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=43.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+|. |+.+. + ...||.+|.+. .+ ++....-+.++|+++..+ ...++-+++|+.|-++-
T Consensus 1 M~I~vN---G~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTIN---GEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEET---TEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEEC---CEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 556554 76554 4 56899998764 46 777888889999998543 45566789999998874
No 241
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=75.71 E-value=2.9 Score=32.71 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=44.2
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHHHHHhCCCCCC-CCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~--~s~TV~dLK~kI~~~~g~~~ip-~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|+|+|. |+.+. ++ ...||.+|.+.+ + ++ ....-+.++|.++..+ ...++-+++|+.|-++-
T Consensus 1 M~I~vN---Ge~~e--~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVN---GKPST--VDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEET---TEEEE--CSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEEC---CEEEE--cCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 666654 76554 45 568999987654 5 66 6777788999998544 45667789999998863
No 242
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=75.13 E-value=1.8 Score=40.39 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 014118 173 EATVQQILDMGGGSWDRETVIRALRAA 199 (430)
Q Consensus 173 e~~V~~i~eMG~~~f~reqV~~ALrAa 199 (430)
+..|+++++|| |++++|+.||+-.
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~ 193 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRL 193 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHc
Confidence 67999999999 9999999999643
No 243
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=74.99 E-value=0.96 Score=37.97 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=43.1
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCcEEE-eCC--e------ecCCcCch--
Q 014118 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLI-HQG--K------VLKDVTTL-- 59 (430)
Q Consensus 1 MkI~VKtl~------gk~~~IeV~~----s~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~G--K------iL~Dd~tL-- 59 (430)
|+|+||... |+...++++. ..||++|-..|.+... ..+-+|+ -+| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677777654 4555677763 2499999888877643 3344443 234 2 45555544
Q ss_pred ---hhcccCCCcEEEEEE
Q 014118 60 ---EENKVAENSFVVVML 74 (430)
Q Consensus 60 ---sdygI~e~stI~vmv 74 (430)
.+|-+++|+.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987754
No 244
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=74.51 E-value=3.5 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHH
Q 014118 309 RLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347 (430)
Q Consensus 309 ~~~~~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~ 347 (430)
++-|+|.+.=+-+++||..+.. -.+||.+.+.|+
T Consensus 18 m~dP~~~~~lq~i~~NP~~~~~-----~~~dP~v~~~~~ 51 (62)
T 2lnm_A 18 FQNPRVQAALMECSENPMNIMK-----YQNDKEVMDVFN 51 (62)
T ss_dssp TTSHHHHHHHHHHTTCGGGHHH-----HTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHCHHHHHH-----HHhChHHHHHHH
Confidence 3456888888889999997764 345899988875
No 245
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=74.44 E-value=7.7 Score=41.66 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=44.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe----CCe-ecCCc-------------CchhhcccCCC
Q 014118 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAEN 67 (430)
Q Consensus 12 ~~~IeV~~s~TV~dLK~kI~~~~g~~~ip------~~~QkLIy----~GK-iL~Dd-------------~tLsdygI~e~ 67 (430)
.+.+.|-.-|||.++|+||-...-+. .| ++++.|-| .|+ +|.|. .||..|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47788888999999999998654322 43 34556655 233 46653 37999999999
Q ss_pred cEEEEEEec
Q 014118 68 SFVVVMLTK 76 (430)
Q Consensus 68 stI~vmv~k 76 (430)
.+|.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 246
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=73.88 E-value=6.6 Score=31.43 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=35.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+..=+.+|-+.=|.++++.+.++|--++.+|++||+.|+++.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 344567777766689999999999999999999999999964
No 247
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=73.74 E-value=1.5 Score=32.49 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc--CCChhHHHHHHHHcCCCHHHHHHHHhh
Q 014118 385 EEREAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLD 423 (430)
Q Consensus 385 ee~~aI~rL~~l--GF~r~~viqAy~aCdkNe~~Aan~L~~ 423 (430)
|-.++|+.|++| .+|++.+.-++.+++.|.+.|.|.||+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456779999999 799999999999999999999999986
No 248
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=73.28 E-value=3.1 Score=31.35 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=24.6
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 014118 169 GSNLEATVQQILDMGGGSWDRETVIRALRAA 199 (430)
Q Consensus 169 g~~~e~~V~~i~eMG~~~f~reqV~~ALrAa 199 (430)
++..++.|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 345678999999999 9999999999876
No 249
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=73.19 E-value=9.8 Score=30.73 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=35.7
Q ss_pred EEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEeCCe
Q 014118 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGK 51 (430)
Q Consensus 3 I~VKt-l~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~-~QkLIy~GK 51 (430)
|+||. .+|..+.+.++++.+..+|.++|...++ +... ...|-|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 44443 4678889999999999999999999988 6543 467778754
No 250
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=73.11 E-value=11 Score=40.46 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe----CCe-ecCCc-------------CchhhcccCC
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip------~~~QkLIy----~GK-iL~Dd-------------~tLsdygI~e 66 (430)
..+.+.|-.-|||.++|+||-...-+. .| +++..|-| .|+ +|.|. .||.+|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788888999999999998765332 33 44556655 233 45542 3789999999
Q ss_pred CcEEEEEEec
Q 014118 67 NSFVVVMLTK 76 (430)
Q Consensus 67 ~stI~vmv~k 76 (430)
|.+|.++.+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987543
No 251
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.02 E-value=6.8 Score=29.79 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHc-CCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 385 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 385 ee~~aI~rL~~l-GF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
.|.+.|...+++ |-++..+++..-+|++|-|.|.+.+|++.
T Consensus 16 ~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 16 RHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 344679999987 89999999999999999999999999764
No 252
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=72.00 E-value=16 Score=34.19 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-------hc-CChHHHHHHHH
Q 014118 173 EATVQQILDMGGGSWDRETVIRALRA-------AY-NNPERAVEYLY 211 (430)
Q Consensus 173 e~~V~~i~eMG~~~f~reqV~~ALrA-------af-nNpdRAVEyL~ 211 (430)
..+|+.|.+|| ++..++.+..+. .. .|...-++||.
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~ 49 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLK 49 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHH
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHH
Confidence 47899999999 999999887655 22 25666778885
No 253
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.92 E-value=15 Score=29.58 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=42.3
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-----C----Cc-------EEEeCCeecCCcC
Q 014118 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA-----S----QQ-------MLIHQGKVLKDVT 57 (430)
Q Consensus 1 MkI~VKtl~------g-k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~-----~----~Q-------kLIy~GKiL~Dd~ 57 (430)
|+|+|+... | +.+.++ ..||.+|.+.+...... +.. . .. .+..||+......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~--l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPA--LKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGG--GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChh--HHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 788888765 3 234444 58999999999877421 111 1 23 5677887663221
Q ss_pred chhhcccCCCcEEEEE
Q 014118 58 TLEENKVAENSFVVVM 73 (430)
Q Consensus 58 tLsdygI~e~stI~vm 73 (430)
-.++-+++|+.|.++
T Consensus 79 -~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 -GLETLLKDSDEIGIL 93 (99)
T ss_dssp -STTSCCCTTEEEEEE
T ss_pred -CCCCCCCCCCEEEEE
Confidence 124468899998886
No 254
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.45 E-value=6 Score=31.88 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=25.9
Q ss_pred CEEEEEeCC-------C-cEEEEEeC--CCCcHHHHHHHHHHHhC
Q 014118 1 MKVFVKTLK-------G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (430)
Q Consensus 1 MkI~VKtl~-------g-k~~~IeV~--~s~TV~dLK~kI~~~~g 35 (430)
|+|+||... | +..++++. ...||.+|+..+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 578887652 2 45667776 67899999999988864
No 255
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=71.37 E-value=4.5 Score=37.39 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 173 e~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
-.+|.+|-++ | ..=-+|..||..+.+|-|.|+|||--
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4689999998 8 88899999999999999999999963
No 256
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=71.22 E-value=4.3 Score=33.67 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.1
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 014118 173 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (430)
Q Consensus 173 e~~V~~i~e-MG~~~f~reqV~~ALrAafnNpdRAVEyL~ 211 (430)
++.|.-+|+ +| -+|+++++||+.+.||.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 577988888 59 9999999999999999999999873
No 257
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=70.84 E-value=10 Score=32.73 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeec-----CC--cCchhhcccCCCcEEEEEE
Q 014118 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (430)
Q Consensus 20 s~TV~dLK~kI~~~~g~~~ip~~~QkLIy--~GKiL-----~D--d~tLsdygI~e~stI~vmv 74 (430)
..|..+|-+.|..+.| +. +...++- ..+.| +| +++|+++||+.|++|.|+=
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4699999888988888 54 3454442 33444 33 5899999999999998874
No 258
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=69.84 E-value=15 Score=31.60 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=40.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh----CCCCCCC----CCcEEEe-CC---eecCC----------c----Cchhhccc
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQ----GSDVYPA----SQQMLIH-QG---KVLKD----------V----TTLEENKV 64 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~----g~~~ip~----~~QkLIy-~G---KiL~D----------d----~tLsdygI 64 (430)
..+.+.|-.-+||.++|+||-... | +|. +++.|-| .| ++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 357788888999999999997543 4 443 3445544 12 23332 1 36788999
Q ss_pred CCCcEEEEE
Q 014118 65 AENSFVVVM 73 (430)
Q Consensus 65 ~e~stI~vm 73 (430)
.+|.+|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999775
No 259
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=69.79 E-value=4.6 Score=39.45 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=33.8
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 173 e~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
-.+|.+|-++ | +.=-+|.+||..+.+|-|.|+|||--
T Consensus 5 a~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3679999998 8 88899999999999999999999983
No 260
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=69.27 E-value=5.2 Score=35.78 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHcC-CChhHHHHHHHHcCCCHHHHHHHHh
Q 014118 383 TPEEREAIERLEAMG-FDRALVLEVFFACNKNEELAANYLL 422 (430)
Q Consensus 383 t~ee~~aI~rL~~lG-F~r~~viqAy~aCdkNe~~Aan~L~ 422 (430)
-.+-+.+++.|..+| |++++|++|..+...|.+.|...|=
T Consensus 99 i~~R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 99 VRTRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344557799999999 8999999999999999999988763
No 261
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=69.04 E-value=1.9 Score=31.85 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 014118 170 SNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (430)
Q Consensus 170 ~~~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~ 211 (430)
.+.++.|++|.+| . ++++-++..|++--+|.|-||+.|+
T Consensus 10 ~e~~~~~~~L~~MFP~---lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPD---MDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHHSTT---SCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHHccc---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3578999999999 6 8999999999999999999999987
No 262
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=68.50 E-value=16 Score=36.09 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=51.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---------eecCCcCchhhcccCCCcEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------KVLKDVTTLEENKVAENSFVV 71 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G---------KiL~Dd~tLsdygI~e~stI~ 71 (430)
+.+.|..++|....+.|+.+.|+.+|-+.|+...|- ...+..-|.+.. +-|+-+++|.+.++....+++
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 357889999999999999999999999999999983 223445665532 235556777776665555655
Q ss_pred EEE
Q 014118 72 VML 74 (430)
Q Consensus 72 vmv 74 (430)
+.+
T Consensus 164 frv 166 (371)
T 3ivf_A 164 LRR 166 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 263
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=68.14 E-value=2.4 Score=33.17 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=20.2
Q ss_pred HHHHHHhCccchhHHHHHHhhhCH-HHHHHHHHc
Q 014118 317 LRTMVQANPQILQPMLQELGKQNP-HLMRLIQEH 349 (430)
Q Consensus 317 lR~~vq~nP~lL~~~lqqi~~~nP-~l~~lI~~n 349 (430)
|.++-++||++++ +.++|| +|+++|++-
T Consensus 33 LqqL~~~NPqL~q-----~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 33 LQQIGRENPQLLQ-----QISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHHHTTCHHHHH-----HHHTTHHHHHHHHHSC
T ss_pred HHHHHhHCHHHHH-----HHHHCHHHHHHHHcCC
Confidence 4457789998776 667775 588888654
No 264
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=67.87 E-value=8.9 Score=29.80 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHc--CCChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 388 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 388 ~aI~rL~~l--GF~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
..|.++++| -+.+.-+.+....|+.|.|.++|.|||+.
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 458888888 57789999999999999999999999864
No 265
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=67.33 E-value=11 Score=25.85 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=32.9
Q ss_pred hHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHh
Q 014118 172 LEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (430)
Q Consensus 172 ~e~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~~ 212 (430)
.++.|.+.++. | -+++.++.-|.++..|.++||...+.
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56789999998 6 68999999999999999999985543
No 266
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.98 E-value=14 Score=39.30 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=54.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCcEEEeC---C--eecCCcCchhhcccCCCcEEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip-~~~QkLIy~---G--KiL~Dd~tLsdygI~e~stI~vmv 74 (430)
|.|.|..++| ++.|.|+.+.|+.+|=..|+...| +. .+..-|.|. | ..|+.+++|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 4678888888 678999999999999999999999 53 233455542 2 246778888888777666666655
Q ss_pred ecCC
Q 014118 75 TKSK 78 (430)
Q Consensus 75 ~k~k 78 (430)
+++-
T Consensus 81 Rvkf 84 (575)
T 2i1j_A 81 RAKF 84 (575)
T ss_dssp EESS
T ss_pred EEEE
Confidence 5543
No 267
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=66.83 E-value=4.4 Score=31.41 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHH
Q 014118 310 LLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 347 (430)
Q Consensus 310 ~~~~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~ 347 (430)
.-|+++++=+-+++||..+..++ .||.++..|+
T Consensus 27 ~DP~~~~~lq~~~~NP~~~~k~~-----~nP~v~~~i~ 59 (71)
T 2llw_A 27 QDPVMQSILQQAQQNPAALQEHM-----KNPEVFKKIQ 59 (71)
T ss_dssp TCTHHHHHHHHHHHCHHHHHHHH-----HSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHHHH-----hCHHHHHHHH
Confidence 33455555555666666555433 2666666654
No 268
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.74 E-value=18 Score=29.73 Aligned_cols=70 Identities=19% Similarity=0.089 Sum_probs=49.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE------eCCeecCCcCchhhc----ccCCCcEEEE
Q 014118 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEEN----KVAENSFVVV 72 (430)
Q Consensus 3 I~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI------y~GKiL~Dd~tLsdy----gI~e~stI~v 72 (430)
|+|-..+|....|.|+..+|+.++-+++..+.++. ....--|+ +--+.|+|+..|-+. .+..+..+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55666789999999999999999999999998842 22233332 234789998876555 4555566655
Q ss_pred EE
Q 014118 73 ML 74 (430)
Q Consensus 73 mv 74 (430)
.-
T Consensus 90 ~k 91 (100)
T 1wgr_A 90 RK 91 (100)
T ss_dssp CS
T ss_pred ec
Confidence 43
No 269
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=66.58 E-value=18 Score=34.72 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCcEEEeC---C--eecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip-~~~QkLIy~---G--KiL~Dd~tLsdygI~e~stI~vm 73 (430)
|.+.|..++|....+.|+...|+.+|=..|+...| +. .+..-|.|. | .-|+.++.|.+........+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN---LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT---CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 56889999999999999999999999999999999 43 233455443 2 23677788877643333344443
No 270
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=66.16 E-value=11 Score=28.37 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCc--EEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~Q--kLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
+...+++....||.+|.+.+...... .... .+..+|+....+ .-+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 34567777778999999998776431 1233 788899988753 568899998886
No 271
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=65.80 E-value=23 Score=26.72 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=37.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCC--CCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 12 HFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 12 ~~~IeV~~s~TV~dLK~kI~~~~g~--~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
.+.++ ....||.+|++.+...... ..+......+..+|+.... +.-+++|+.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45555 5677999999998754210 0011234577889998753 4468899999887
No 272
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=65.56 E-value=2.9 Score=31.57 Aligned_cols=54 Identities=28% Similarity=0.420 Sum_probs=34.4
Q ss_pred CchHHhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHH--HHHHHHHHhCccchhHHHHHHhhhCHH-HHHHHHH
Q 014118 275 GTLDFLRNSQQVSMMFYLFASLLFICDVFWYSYFRLLFQF--QALRTMVQANPQILQPMLQELGKQNPH-LMRLIQE 348 (430)
Q Consensus 275 ~~l~~Lr~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~lR~~vq~nP~lL~~~lqqi~~~nP~-l~~lI~~ 348 (430)
++++|||++||...|-.++ +..|+. .-|.++-++||++++ +.++||+ |+++|++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~v---------------q~NP~~L~~lLqql~~~nP~l~~-----~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQII---------------QQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNE 58 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHH---------------HHCGGGHHHHHHHHHHHCHHHHH-----HHHHSHHHHHHHHTS
T ss_pred chHHHHHcChHHHHHHHHH---------------HHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcc
Confidence 4689999999555443333 233332 124557789998776 6677754 8887754
No 273
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=65.44 E-value=6.8 Score=28.33 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHH--cCCChhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 390 IERLEA--MGFDRALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 390 I~rL~~--lGF~r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
|.+-.. -|=+|+..|.-+-..+-|.++|.|-|++.
T Consensus 13 i~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 13 ISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 555444 39999999999999999999999999986
No 274
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=62.67 E-value=26 Score=34.15 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC-eecCC-cCchhhccc
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKV 64 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G-KiL~D-d~tLsdygI 64 (430)
....+.+.+..|+.++|++|+..++ ++++.|.|+|.+ ++.-+ .+.-..|.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 4467888999999999999999999 999999999998 44444 445555543
No 275
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=59.92 E-value=8.3 Score=37.82 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=27.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHH----HHhcCChHHHHHHHH
Q 014118 172 LEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLY 211 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~AL----rAafnNpdRAVEyL~ 211 (430)
.+.+|+.|.++| +++++++++- ..+-.|||.-++||.
T Consensus 19 ~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~ 59 (343)
T 3mva_O 19 NEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLL 59 (343)
T ss_dssp -CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHH
Confidence 457899999999 9999887651 123357787778875
No 276
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.32 E-value=14 Score=27.55 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=34.0
Q ss_pred chHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 171 ~~e~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
..++.|.+.|++ | -+++.++.-|.++..|.++||...+..
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 346789999997 6 679999999999999999999866543
No 277
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=58.08 E-value=11 Score=27.71 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 8 l~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++|+.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4576554 4 568999998876 4 555667788999988543 23344688999998873
No 278
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=57.12 E-value=7.2 Score=29.93 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHhCccchhH-HHHHHhhhCHHHHHHHHH
Q 014118 307 YFRLLFQFQALRTMVQANPQILQP-MLQELGKQNPHLMRLIQE 348 (430)
Q Consensus 307 ~~~~~~~f~~lR~~vq~nP~lL~~-~lqqi~~~nP~l~~lI~~ 348 (430)
.++.-|+|.++=+-|++||+.+.. . .+||.+++.|..
T Consensus 27 ~~~~DP~~~~~lq~i~~NP~~i~~~~-----~~dPrv~~~l~~ 64 (71)
T 2llv_A 27 EMMKDPQLVAKLIGYKQNPQAIGQDL-----FTDPRLMTIMAT 64 (71)
T ss_dssp HHHHSCTHHHHHHHHHHSCTTHHHHT-----TTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHCHHHHHHHH-----hhCcHHHHHHHH
Confidence 344556888888889999998873 3 369999988753
No 279
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=56.98 E-value=11 Score=27.54 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCChhHH--HHHHHHcCCCHHHHHHHHh
Q 014118 385 EEREAIERLEAMGFDRALV--LEVFFACNKNEELAANYLL 422 (430)
Q Consensus 385 ee~~aI~rL~~lGF~r~~v--iqAy~aCdkNe~~Aan~L~ 422 (430)
.=.++|..+.+|||+.+-- .+...+++.|...|.+.|-
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 3457899999999997655 5888899999999988764
No 280
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=55.40 E-value=24 Score=26.37 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=38.3
Q ss_pred ccCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 167 ~~g~~~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
-.-+.++.+|+++.+| - ++++++..-|+-. +|+|.-+|=++.|
T Consensus 12 ~~~sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 12 YFQGQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 3446788999999999 6 7999999999998 9999999999988
No 281
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=53.47 E-value=11 Score=30.87 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=40.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-----------cEEEeCC-eecCC------cCchhhcccCCCcEEEEE
Q 014118 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-----------QMLIHQG-KVLKD------VTTLEENKVAENSFVVVM 73 (430)
Q Consensus 12 ~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~-----------QkLIy~G-KiL~D------d~tLsdygI~e~stI~vm 73 (430)
...|+|++++|+.+|-+.+.+.-. +.... ..|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 356899999999999999988433 22222 2333333 23432 577999999999998884
No 282
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=53.25 E-value=10 Score=32.52 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=28.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE
Q 014118 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI 47 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI 47 (430)
..+.|-.+.|+.+||..|.+..| +|+++|||-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEE
Confidence 35678889999999999999999 999999994
No 283
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=51.69 E-value=68 Score=25.61 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=44.0
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CCCCCC-cE---EEe-CCeecCCcCchhhcccCCCcEEEEE
Q 014118 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VYPASQ-QM---LIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~-~s~TV~dLK~kI~~~~g~~-~ip~~~-Qk---LIy-~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
|||+|+. .+..+.|-+. ...||.+|-++--.++-+. ...++. .. |-+ .|-+|+.+..|.+. +.++++|.-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 4556667664 4569999876655443221 011222 22 223 78899988899886 4567776644
No 284
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=51.60 E-value=15 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=30.1
Q ss_pred HHHHHHHHHc-CCCh-hHHHHHHHHcCCCHHHHHHHH
Q 014118 387 REAIERLEAM-GFDR-ALVLEVFFACNKNEELAANYL 421 (430)
Q Consensus 387 ~~aI~rL~~l-GF~r-~~viqAy~aCdkNe~~Aan~L 421 (430)
.+.|..++++ |.+. +.+++-..+|++|-+.|++-.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 3568889988 9886 999999999999999998743
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=51.49 E-value=16 Score=39.56 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=41.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-ecCCcCchhhc
Q 014118 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VLKDVTTLEEN 62 (430)
Q Consensus 9 ~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GK-iL~Dd~tLsdy 62 (430)
..+...+.+.++.|+.+||.+|+..+| ++.+.|.|++.+. .|........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567889999999999999999999 9999999998654 45555566665
No 286
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=48.23 E-value=1.1e+02 Score=25.09 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=53.1
Q ss_pred EEEEEeCCC---cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---eecCCcCchhhcccCCCcEEEEEEe
Q 014118 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 2 kI~VKtl~g---k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G---KiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
+|+|...+. ..+++.|..+.-|+-|.-+|-++.... -.-++--|-+-- -.|+-..||..|||..+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 678887553 568899999999999999988776511 123344444333 2578889999999999999988754
No 287
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=48.22 E-value=51 Score=25.22 Aligned_cols=58 Identities=10% Similarity=0.228 Sum_probs=37.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhCC--CC--C----CCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 15 IEVKPEDKVSDVKKNIETVQGS--DV--Y----PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~--~~--i----p~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
++++...||.+|.+.+...... .. + ......+..+|+..... .-.+.-+++|+.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEe
Confidence 4566668999999999877320 00 0 01345677888877522 1234468899998886
No 288
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=47.39 E-value=21 Score=26.64 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHc
Q 014118 385 EEREAIERLEAMGFDRALVLEVFFAC 410 (430)
Q Consensus 385 ee~~aI~rL~~lGF~r~~viqAy~aC 410 (430)
...++++-|..|||.+..+.+|.-.+
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34579999999999999999888776
No 289
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=47.28 E-value=77 Score=25.23 Aligned_cols=61 Identities=7% Similarity=0.077 Sum_probs=48.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCC--CC-CcEEEeCC--eecCCcCchhhcccCCCcEEEEEE
Q 014118 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--AS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~~-g~~~ip--~~-~QkLIy~G--KiL~Dd~tLsdygI~e~stI~vmv 74 (430)
.-+.|+.++|+.++-++++-.. |.. ++ +. -.+..++| +.|..+.|+.+-||+.-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4578999999999999998543 322 32 12 35677999 899999999999999999888765
No 290
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=45.92 E-value=26 Score=28.88 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.0
Q ss_pred ccChHHHHHHHHHHH-cCCChhHHHHHHHHcCCCHHHHHHHH
Q 014118 381 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 421 (430)
Q Consensus 381 ~lt~ee~~aI~rL~~-lGF~r~~viqAy~aCdkNe~~Aan~L 421 (430)
.+++|| |+.+++ .|-+|..+++|+..|+.|.=-|.-+|
T Consensus 63 ~i~~ed---i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDD---IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHH---HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 477777 555554 69999999999999999998887665
No 291
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=44.28 E-value=42 Score=29.25 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=37.5
Q ss_pred hhHHHHHHhhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCCcccccccCCCcccccChHHHHHH-----HHHHHcCCCh
Q 014118 328 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMGFDR 400 (430)
Q Consensus 328 L~~~lqqi~~~nP~l~~lI~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~i~lt~ee~~aI-----~rL~~lGF~r 400 (430)
|..++++|. .|++++...++|+.+++- .-||+||++|| .+|..+|-.-
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~~-----------------------~gLTeEEr~AV~~rD~~~L~~lGgn~ 89 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLDE-----------------------WNLTPAAKAAVLARDYNAMIDEGGNV 89 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHHT-----------------------TTCCHHHHHHHHHTCHHHHHHTTCCH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 458889997 499999999999998752 24789999995 4588888553
No 292
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.10 E-value=74 Score=26.31 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=46.2
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE---eCCee--cCCcCchhhcccCCCcEEEEEEe
Q 014118 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 5 VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI---y~GKi--L~Dd~tLsdygI~e~stI~vmv~ 75 (430)
|-..+...+++.+....|+.+|+..+..+.+ +..+.++|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4444566678889999999999999999998 555578775 67754 45543322223445667877643
No 293
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=43.98 E-value=93 Score=24.81 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=49.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCC--CCCcEEEeCCee--cCCcCchhhcccCCCcEEEEEE
Q 014118 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--ASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~~-g~~~ip--~~~QkLIy~GKi--L~Dd~tLsdygI~e~stI~vmv 74 (430)
.-+.|+..+|+.++-+++.... |.. +. +.-.|..++|.. |.++.++.+.||+.-+.|-++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999998653 322 21 236688899998 9999999999999999888764
No 294
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=43.65 E-value=7.9 Score=29.76 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 14 ~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
.+++....||.+|.+.+ + ++.....+..+|+++..+ .-|++|+.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998764 4 556677888999998765 457788877664
No 295
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=42.11 E-value=94 Score=24.83 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=41.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeec-CCcCchhhc--ccCCCcEEEEEEe
Q 014118 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (430)
Q Consensus 14 ~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GKiL-~Dd~tLsdy--gI~e~stI~vmv~ 75 (430)
.+-|+.+.||..+...|.++.+ +.+++ .-|+.+...+ ..+.+++++ +.+++.+++|.-.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4567889999999999999988 65554 4555566655 446677655 2346778887654
No 296
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=41.30 E-value=67 Score=33.57 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=45.5
Q ss_pred EEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CCCcEE--EeCCee---cCCcCchhhcccCCCcEEE
Q 014118 2 KVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVV 71 (430)
Q Consensus 2 kI~VKtl~gk--~~~IeV~~s~TV~dLK~kI~~~~g~~~ip---~~~QkL--Iy~GKi---L~Dd~tLsdygI~e~stI~ 71 (430)
+|+....+.+ .+.+-|..+.||.||-+.+.++.+ ++ ....|| +|+||+ +.++.+|+.+.=....++.
T Consensus 341 kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~r 417 (530)
T 2ylm_A 341 KCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFR 417 (530)
T ss_dssp EEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEE
T ss_pred EEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEE
Confidence 4544433322 466777889999999999998887 54 466777 589975 6778888865321144554
Q ss_pred E
Q 014118 72 V 72 (430)
Q Consensus 72 v 72 (430)
+
T Consensus 418 i 418 (530)
T 2ylm_A 418 I 418 (530)
T ss_dssp E
T ss_pred E
Confidence 4
No 297
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.77 E-value=1.4e+02 Score=24.03 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~QkLIy--~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
.+..+|+.|...+.+ ++....+|+. .|.+++|+.-+..+ . +.++.|++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL--p-~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL--G-DNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS--C-SSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC--C-CCCEEEEEcC
Confidence 379999999999998 7655666653 68888877655443 2 4455555543
No 298
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=40.48 E-value=1.1e+02 Score=24.61 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=41.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeec-CCcCchhhc--ccCCCcEEEEEEe
Q 014118 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (430)
Q Consensus 14 ~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL-~Dd~tLsdy--gI~e~stI~vmv~ 75 (430)
.+-|+.+.||..+...|.++.+ + +..-|+.+...+ ..+.+++++ +.+++.+|+|.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4568889999999999999988 5 566666677655 446777665 3346778887654
No 299
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=39.83 E-value=51 Score=30.75 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=21.1
Q ss_pred cccccChHHHH-HHHH-HHHcCCChhHHHHHHHHc
Q 014118 378 QAVTVTPEERE-AIER-LEAMGFDRALVLEVFFAC 410 (430)
Q Consensus 378 ~~i~lt~ee~~-aI~r-L~~lGF~r~~viqAy~aC 410 (430)
..+.++.|... .|+- +.++||+++++..+...|
T Consensus 138 ~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 138 RLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp GGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred cceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35556666533 3553 467888888877777766
No 300
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=38.47 E-value=70 Score=24.79 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=43.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEEec
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv~k 76 (430)
+|+|.+.+|..+ ++....|+.++=..|....++ .-.--..+|+...-+ +-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 578888899765 456788999998888766652 112234578766543 456788888887543
No 301
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.80 E-value=78 Score=23.80 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
.+.++.|++.+++-| .-+.+.++.-|..+..|.++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345778999999853 1278899999999999999999877765
No 302
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.11 E-value=67 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+..+.+|.++.+| - ++++.+..-|+-. +|.+.-+|=++.|
T Consensus 11 ~ql~~mv~~V~~mfP~---vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPH---VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHCSS---SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 4578999999999 6 7999999999877 5999999999999
No 303
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.75 E-value=42 Score=24.40 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.3
Q ss_pred ccccCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 165 ~l~~g~~~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
.++.+..+.+.+.+ |+|+-+.+||+.+.+|..+|.+.| ||.
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 34445556655543 689999999999999999999987 664
No 304
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.06 E-value=68 Score=24.11 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=32.8
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 174 ~~V~~i~eM-G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+.|.+.+++ | =+++.++.-|.++..|.++||...+..
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 789999997 7 799999999999999999999877643
No 305
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=34.88 E-value=50 Score=26.81 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=41.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCcEEEEEE
Q 014118 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 11 k~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vmv 74 (430)
+.+.+++....||.++-+...-......+.....++-.+|++.. .++-+++|+.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 45677888999999998876543221014445678888999887 444578899998863
No 306
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=34.36 E-value=1.3e+02 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCcCchhhc--cc-CCCcEEEEEEec
Q 014118 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GKiL~Dd~tLsdy--gI-~e~stI~vmv~k 76 (430)
+-|..+.||.++...|....+ +.+++ .-|+.++....-+.+++++ .- .++.+|+|..+.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 357889999999999999988 65555 5555688766677887765 22 356688887653
No 307
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=34.28 E-value=1.1e+02 Score=25.93 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=41.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCcCchhhc--ccC-CCcEEEEEEec
Q 014118 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GKiL~Dd~tLsdy--gI~-e~stI~vmv~k 76 (430)
+-|..+.||.++...|.++.. +.+++ .-|+.++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 456789999999999999988 65665 4444566555667787766 223 56788887653
No 308
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.04 E-value=86 Score=23.26 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 170 SNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 170 ~~~e~~V~~i~eM--G~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
+..+.+|+++.+| - ++++++..-|+-.- |.|.-+|=++.|
T Consensus 11 ~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 4578999999999 6 79999999998877 999999999988
No 309
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=34.02 E-value=1.6e+02 Score=24.66 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=40.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCc-EEEeCCeecCCcCchhhc--cc-CCCcEEEEEEec
Q 014118 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~~~ip~~~Q-kLIy~GKiL~Dd~tLsdy--gI-~e~stI~vmv~k 76 (430)
+-|..+.||.++...|....+ +.+++- -|+.++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447889999999999999988 655544 444466545667777765 22 356688887653
No 310
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=33.60 E-value=69 Score=33.26 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=42.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCcEEEeC--Ce--ecCCcCchhh
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQ--GK--VLKDVTTLEE 61 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~--~~QkLIy~--GK--iL~Dd~tLsd 61 (430)
|.+.|..++|....+.|+...|+.+|-..|+.+.| +.. +..-|.+. ++ .|+++..+-|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 46789999999999999999999999999999999 643 34455442 22 2555554443
No 311
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=33.38 E-value=48 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhC
Q 014118 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (430)
Q Consensus 10 gk~~~IeV~~s~TV~dLK~kI~~~~g 35 (430)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999999987
No 312
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=33.30 E-value=67 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=24.8
Q ss_pred EEEEeCCCcEE-EEEeC-CCCcHHHHHHHHHHHhC
Q 014118 3 VFVKTLKGTHF-EIEVK-PEDKVSDVKKNIETVQG 35 (430)
Q Consensus 3 I~VKtl~gk~~-~IeV~-~s~TV~dLK~kI~~~~g 35 (430)
|+.|....+.+ .|.++ ...+|.+||+.|..+.+
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 56666655544 57777 56799999999999887
No 313
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=31.93 E-value=1.6e+02 Score=24.44 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=40.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCcCchhhc--cc-CCCcEEEEEEec
Q 014118 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GKiL~Dd~tLsdy--gI-~e~stI~vmv~k 76 (430)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+++++ .. .++.+|+|....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 345668899999999999988 55554 4555566544667777766 22 347788887754
No 314
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=31.59 E-value=1.4e+02 Score=24.44 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=39.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCcCchhhc--cc-CCCcEEEEEE
Q 014118 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVML 74 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GKiL~Dd~tLsdy--gI-~e~stI~vmv 74 (430)
+-|..+.||.+|...|....+ +.+++ .-|+.++....-+.+|+++ .. .++.+|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 355668899999999999987 55554 4555566544667777776 22 3467888764
No 315
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=31.20 E-value=1.2e+02 Score=25.83 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE-eCCeec-CCcCchhhc--cc-CCCcEEEEEEe
Q 014118 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KV-AENSFVVVMLT 75 (430)
Q Consensus 15 IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~GKiL-~Dd~tLsdy--gI-~e~stI~vmv~ 75 (430)
+-|..+.||.++...|.++.+ +.+++--.+ |.++.+ .-+.+++++ .- .++.+|+|..+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457788999999999999998 666655545 766655 557777765 22 34678888654
No 316
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=30.22 E-value=53 Score=26.91 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------cCChHHHHHHHHhC
Q 014118 175 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 213 (430)
Q Consensus 175 ~V~~i~eMG~~~f~reqV~~ALrAa-------fnNpdRAVEyL~~G 213 (430)
.|++.++|| |++..|.++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 799999999 9999999999864 45555555555544
No 317
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=29.25 E-value=31 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCccchhHHHHHHhhh
Q 014118 313 QFQALRTMVQANPQILQPMLQELGKQ 338 (430)
Q Consensus 313 ~f~~lR~~vq~nP~lL~~~lqqi~~~ 338 (430)
|=+|+-.++.+||+++-.++.|-.+.
T Consensus 18 qqqqvl~ILksnPqLMAAfIkQR~~~ 43 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLMAAFIKQRTAK 43 (47)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45667777888888887777765543
No 318
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=29.18 E-value=1.5e+02 Score=25.11 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-hCC--C--CCCCCCcEEEeCCeecC--CcCchhhcccCCCcEEEEE
Q 014118 13 FEIEVKPEDKVSDVKKNIETV-QGS--D--VYPASQQMLIHQGKVLK--DVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~-~g~--~--~ip~~~QkLIy~GKiL~--Dd~tLsdygI~e~stI~vm 73 (430)
+.+-|.++.+.++|-+.+-.- .+. | .|.-++-....+|+... .+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999988776543 231 1 14455667889999984 4799999999999998875
No 319
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=28.15 E-value=1.3e+02 Score=21.74 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=32.1
Q ss_pred HHHHHHHHH--cCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 173 EATVQQILD--MGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 173 e~~V~~i~e--MG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
|..|.+.-. -| -+|+-++|-|+-..-|++.||.-|++-
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 667776554 48 999999999999999999999999863
No 320
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=27.68 E-value=26 Score=25.91 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=23.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHHcHH
Q 014118 304 WYSYFRLLFQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 351 (430)
Q Consensus 304 ~~~~~~~~~~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~n~~ 351 (430)
||+.++..|.... +-+||++.. .||+|. +||.-++-...||.
T Consensus 4 ~~~kl~~dPe~~~----~m~dP~~~~-~lq~i~-~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 4 VISKIMENPDVAM----AFQNPRVQA-ALMECS-ENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHHTTSHHHHH----HTTSHHHHH-HHHHHT-TCGGGHHHHTTCHH
T ss_pred HHHHHHcChHHHH----HcCCHHHHH-HHHHHH-HCHHHHHHHHhChH
Confidence 4555566665432 235666543 555543 56776666666665
No 321
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=27.07 E-value=50 Score=31.38 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCcc--chhHHHHHHhhhCHHHHHHHHHcHHHHHHHhcCC
Q 014118 313 QFQALRTMVQANPQ--ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 360 (430)
Q Consensus 313 ~f~~lR~~vq~nP~--lL~~~lqqi~~~nP~l~~lI~~n~~~Fl~~l~~~ 360 (430)
.-.+||++++.++. -|.-=+..|..-+|+|+..|.+||.+++.++.+.
T Consensus 27 Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a 76 (279)
T 1ltl_A 27 YKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQA 76 (279)
T ss_dssp HHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHH
Confidence 45788888844443 4444467888889999999999999999997654
No 322
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=26.77 E-value=85 Score=25.82 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CcEEE--eCCeecCCcCchhhcccCCCcEEEEEEe
Q 014118 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (430)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~--~QkLI--y~GKiL~Dd~tLsdygI~e~stI~vmv~ 75 (430)
.+..+|+.|...+.+ ++.. ..+|+ ..|.+++|+.-+..+ .++ ++.+++.
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~n-T~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--PSN-TKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--CSC-CEEEEEC
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--CCC-CEEEEEc
Confidence 379999999999998 7542 34553 479999887665543 344 4444443
No 323
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.28 E-value=2.3e+02 Score=22.11 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHhC
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAafnNpdRAVEyL~~G 213 (430)
-+..+++|-|.- |.-|-.-...||+|+.+|...||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 356889999983 23355666779999999999999999754
No 324
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=25.87 E-value=58 Score=28.86 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=32.0
Q ss_pred HHHcHHHHHHHhcCCCCCCC---CCc-ccccccCCCcccccChHHHHHHHHHHHcCC
Q 014118 346 IQEHQTDFLRLINEPVEGGE---GNV-LGQLASAMPQAVTVTPEEREAIERLEAMGF 398 (430)
Q Consensus 346 I~~n~~~Fl~~l~~~~~~~~---g~~-~~~~~~~~~~~i~lt~ee~~aI~rL~~lGF 398 (430)
|-.+|+.+++++..++.=.+ |.. .....-.....|.+++||.+++++|.+.|.
T Consensus 85 l~k~p~d~~~lve~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~lk~L~~~Gv 141 (165)
T 1vsq_C 85 LFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGI 141 (165)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEEEECCCCTTSEECSSSCEECHHHHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHcCCCCCEEEECCCcCCCCCeEEeccEeeCHHHHHHHHHHHHCCC
Confidence 45677888888755432000 100 000001122467899999999999999994
No 325
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=25.65 E-value=58 Score=29.03 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=32.7
Q ss_pred HHHHcHHHHHHHhcCCCCCCC---CCccccccc--CCCcccccChHHHHHHHHHHHcCC
Q 014118 345 LIQEHQTDFLRLINEPVEGGE---GNVLGQLAS--AMPQAVTVTPEEREAIERLEAMGF 398 (430)
Q Consensus 345 lI~~n~~~Fl~~l~~~~~~~~---g~~~~~~~~--~~~~~i~lt~ee~~aI~rL~~lGF 398 (430)
+|-.+++++++++..++.=.+ |.. ...++ .....|.|++||.+++++|.+.|.
T Consensus 86 il~k~p~d~~~lve~Gv~i~~vNvG~m-~~~~gk~~i~~~V~v~~ed~~~lk~L~~~Gv 143 (168)
T 3eye_A 86 LICRTPQTVRKLVEGGIDLKDVNVGNM-HFSEGKKQISSKVYVDDQDLTDLRFIKQRGV 143 (168)
T ss_dssp EEESSHHHHHHHHHTTCCCCEEEECCB-CCCTTCEEEETTEEECHHHHHHHHHHHHTTC
T ss_pred EEECCHHHHHHHHHcCCCCCEEEECCC-cCCCCCEEEeccEeeCHHHHHHHHHHHHCCC
Confidence 346678888888876532100 110 00000 112367899999999999999995
No 326
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=25.61 E-value=63 Score=28.94 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.6
Q ss_pred cchHHHHHHH-HHcCCCCCCH---HHHHHHHHHhcCC-hHHHHHHHHhC--CCCC
Q 014118 170 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 217 (430)
Q Consensus 170 ~~~e~~V~~i-~eMG~~~f~r---eqV~~ALrAafnN-pdRAVEyL~~G--IP~~ 217 (430)
+.-+..|+.| .+-| |.+ ++|+.||+..-.+ |..=.+||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 4457888888 6788 865 6788899999999 99888999999 6654
No 327
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=25.22 E-value=93 Score=29.99 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=36.9
Q ss_pred ccccChHHHHHHHHHHHc----C----CChhHHHHHHHHcCCCHHHHHHHHh
Q 014118 379 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 422 (430)
Q Consensus 379 ~i~lt~ee~~aI~rL~~l----G----F~r~~viqAy~aCdkNe~~Aan~L~ 422 (430)
.-.||++++++|++|.++ | .+....+.=+.||+.|.+.|...|-
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 347999999999998765 4 5667788888999999999998874
No 328
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=24.30 E-value=1.5e+02 Score=25.03 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CcEEE---eCCee--cCCcCchhhcccCCCcEEEEEE
Q 014118 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGKV--LKDVTTLEENKVAENSFVVVML 74 (430)
Q Consensus 8 l~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~------~QkLI---y~GKi--L~Dd~tLsdygI~e~stI~vmv 74 (430)
.+...+++.+....|+.+++..+..+.+ +..+ .++|+ ++|.. |+++..--.-.+.-+..|++..
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~ 91 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACT 91 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEEC
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 3445567888889999999999999988 4333 67774 67753 5544332222344456777653
No 329
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=24.21 E-value=2.4e+02 Score=26.99 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=45.7
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--e-C---CeecCCcCchhhc----ccCCCcEEEE
Q 014118 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H-Q---GKVLKDVTTLEEN----KVAENSFVVV 72 (430)
Q Consensus 3 I~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLI--y-~---GKiL~Dd~tLsdy----gI~e~stI~v 72 (430)
|.|-..+|....|.|++++|+.+|-..+..+.++ ...+.--|+ + . -+.|+|+..+-+. ....+..+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4455567888999999999999999988888773 223333332 1 1 3678888776654 3444555554
Q ss_pred E
Q 014118 73 M 73 (430)
Q Consensus 73 m 73 (430)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 330
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=23.66 E-value=59 Score=28.76 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHcHHHHHHHhcCCCCCCC---CCc-ccccccCCCcccccChHHHHHHHHHHHcCC
Q 014118 346 IQEHQTDFLRLINEPVEGGE---GNV-LGQLASAMPQAVTVTPEEREAIERLEAMGF 398 (430)
Q Consensus 346 I~~n~~~Fl~~l~~~~~~~~---g~~-~~~~~~~~~~~i~lt~ee~~aI~rL~~lGF 398 (430)
|-.+|+.+++++..++.=.+ |.. .....-.....+.+++||.+++++|.+.|.
T Consensus 83 l~k~p~d~~~lve~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~l~~L~~~Gv 139 (163)
T 1ble_A 83 LFENPSDIVSLIEAGVPIKTVNVGGMRFENHRRQITKSVSVTEQDIKAFETLSDKGV 139 (163)
T ss_dssp EESSSHHHHHHHTTTCCCCEEEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHcCCCCCEEEECCCCCCCCCeEEeccEeeCHHHHHHHHHHHHCCC
Confidence 34567788888755432000 110 000001122467899999999999999994
No 331
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=23.19 E-value=1.4e+02 Score=28.16 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.1
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC-------CeecCCcCchhhc
Q 014118 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN 62 (430)
Q Consensus 3 I~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~-------GKiL~Dd~tLsdy 62 (430)
|+|-.-+|....|.|+++.|+.+|-..+..+.+ +..+.-..++- -|.|+|+..+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 555566888899999999999999988877765 33232222222 3678887766544
No 332
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=23.17 E-value=1.1e+02 Score=21.37 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=30.0
Q ss_pred chHHHHHHHHHc-CCCCCCH-HHHHHHHHHhcCChHHHHH
Q 014118 171 NLEATVQQILDM-GGGSWDR-ETVIRALRAAYNNPERAVE 208 (430)
Q Consensus 171 ~~e~~V~~i~eM-G~~~f~r-eqV~~ALrAafnNpdRAVE 208 (430)
+.++.|.+..++ | -+- ++++.=|.++..|.+.||.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 468899999999 7 664 9999999999999999974
No 333
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=22.91 E-value=42 Score=24.39 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHcCCCHHHHHHHH
Q 014118 398 FDRALVLEVFFACNKNEELAANYL 421 (430)
Q Consensus 398 F~r~~viqAy~aCdkNe~~Aan~L 421 (430)
|.+..+.+|+-.|+.|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457889999999999999999876
No 334
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=22.51 E-value=1.5e+02 Score=31.87 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=38.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe
Q 014118 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (430)
Q Consensus 1 MkI~VKtl~gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy 48 (430)
|.+.|..++|....+.|+...|+.+|-..|+.+.|- ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999983 2345556655
No 335
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=22.34 E-value=52 Score=27.24 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHH-----HcHHHHHHHh
Q 014118 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ-----EHQTDFLRLI 357 (430)
Q Consensus 313 ~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~-----~n~~~Fl~~l 357 (430)
+.+...++...||+++..||+.+..++|+-++.|+ ++.+.+.++.
T Consensus 7 D~~~~l~~~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~a 56 (119)
T 3myf_A 7 NWDLCLTQANHKSNLALEMLKMLLDSLPETVEKIQTALGQNDQATMLSTI 56 (119)
T ss_dssp CHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66778888999999999999999999988888876 3455665554
No 336
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.56 E-value=19 Score=30.87 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHc-CCC-hhHHHHHHHHcCCCHHHHHHHHhhc
Q 014118 389 AIERLEAM-GFD-RALVLEVFFACNKNEELAANYLLDH 424 (430)
Q Consensus 389 aI~rL~~l-GF~-r~~viqAy~aCdkNe~~Aan~L~~~ 424 (430)
-+++|+++ |.. -...-+||-||+.|.+.|+.||-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 37788888 765 6677789999999999999999765
No 337
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=21.93 E-value=2.1e+02 Score=25.13 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=37.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCC---------CCCcEEEeCCeecCCcCchhhcccCCCcEEEEE
Q 014118 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (430)
Q Consensus 14 ~IeV~~s~TV~dLK~kI~~~~g~~~ip---------~~~QkLIy~GKiL~Dd~tLsdygI~e~stI~vm 73 (430)
.++++. .||.+|.+.+...+.. +. .....+..||+...... -.++-+++|+.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEE
Confidence 445665 8999999999877321 10 23456778888876532 234568999999887
No 338
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=21.80 E-value=37 Score=24.64 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 187 f~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
|+|+-+.+||+.+ +|..+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999986 664
No 339
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.78 E-value=44 Score=26.17 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHcCCCHHHHHHHH
Q 014118 399 DRALVLEVFFACNKNEELAANYL 421 (430)
Q Consensus 399 ~r~~viqAy~aCdkNe~~Aan~L 421 (430)
.+..+.+|+..|+.|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 35677899999999999999876
No 340
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=21.66 E-value=50 Score=30.60 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAa 199 (430)
.++.+.-|+.+| |.+.++.+|++..
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 468999999999 9999999999886
No 341
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.59 E-value=1.6e+02 Score=23.73 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCc-EEEeCCeec
Q 014118 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL 53 (430)
Q Consensus 10 gk~~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~Q-kLIy~GKiL 53 (430)
...+.+.|+...|=.++|+.|+..++ +.+... .+++.||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36899999999999999999999999 777776 457788754
No 342
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=21.30 E-value=83 Score=27.85 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=32.8
Q ss_pred HHHHcHHHHHHHhcCCCCCCC---CCcccccc--cCCCcccccChHHHHHHHHHHH-cCC
Q 014118 345 LIQEHQTDFLRLINEPVEGGE---GNVLGQLA--SAMPQAVTVTPEEREAIERLEA-MGF 398 (430)
Q Consensus 345 lI~~n~~~Fl~~l~~~~~~~~---g~~~~~~~--~~~~~~i~lt~ee~~aI~rL~~-lGF 398 (430)
+|-.+++++++++..++.=.+ |. ....+ -.....|.+++||.+++++|.+ .|.
T Consensus 83 il~k~p~d~~~lv~~g~~i~~vNvG~-m~~~~g~~~i~~~v~v~~ed~~~lk~L~~~~Gv 141 (163)
T 3p3v_A 83 IVVKDLQDAKLLVEGGVPITEINIGN-IHKTDDKVAITQFISLGETDKSAIRCLAHDHHV 141 (163)
T ss_dssp EEESSHHHHHHHHHTTCCCCEEEEEE-BCCCTTSEESSSSBEECHHHHHHHHHHHHTSCC
T ss_pred EEECCHHHHHHHHHcCCCCCEEEECC-CcCCCCCEEEeccEeeCHHHHHHHHHHHHhcCC
Confidence 345678888888766532100 10 00000 1123468899999999999999 895
No 343
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=21.00 E-value=95 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHH
Q 014118 2 KVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (430)
Q Consensus 2 kI~VKtl~gk~~~IeV~~s~TV~dLK~ 28 (430)
+|+|...+|+.+.|++....||.+.-.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 789999999999999999999988543
No 344
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.95 E-value=83 Score=26.30 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHH
Q 014118 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 346 (430)
Q Consensus 313 ~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI 346 (430)
-+.||++++..||+....+| ++||||.-.|
T Consensus 57 iL~qmK~~~~~nP~~a~~LL----~q~PQLAyAl 86 (109)
T 2l9b_A 57 FLQKFQEWTRAHPEDAASLL----ELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHHCHHHHHHHH----HHCHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHH----HHCchHHHHH
Confidence 35688888889988666554 4678877655
No 345
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=20.84 E-value=62 Score=28.69 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=31.8
Q ss_pred HHHcHHHHHHHhcCCCCCCCCCcccccc---c--CCCcccccChHHHHHHHHHHHcCC
Q 014118 346 IQEHQTDFLRLINEPVEGGEGNVLGQLA---S--AMPQAVTVTPEEREAIERLEAMGF 398 (430)
Q Consensus 346 I~~n~~~Fl~~l~~~~~~~~g~~~~~~~---~--~~~~~i~lt~ee~~aI~rL~~lGF 398 (430)
|-.+|+.+++++..++.=.+ -..|+.. + .....|.+++||.+++++|.+.|.
T Consensus 82 l~k~p~d~~~lve~Gv~i~~-iNvG~m~~~~gk~~i~~~v~v~~ed~~~lk~L~~~Gv 138 (164)
T 1nrz_A 82 LFTNPHDVLTMVRQGVQIAT-LNIGGMAWRPGKKQLTKAVSLDPQDIQAFRELDKLGV 138 (164)
T ss_dssp EESSHHHHHHHHTTTCCCSE-EEEEEBCCCTTCEEEETTEEECHHHHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHcCCCCCE-EEECCCcCCCCCeEEeccEeeCHHHHHHHHHHHHCCC
Confidence 45677888888855532000 0011110 0 112367899999999999999994
No 346
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=20.82 E-value=81 Score=32.96 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=51.7
Q ss_pred EEEEeCC--CcEEE----EEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC----C--eecC-CcCchhhc--ccCCC
Q 014118 3 VFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (430)
Q Consensus 3 I~VKtl~--gk~~~----IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~----G--KiL~-Dd~tLsdy--gI~e~ 67 (430)
|++|..+ .+++. +-|+.+.+|.+|-..|.+..| +|++.--.+|. + ..|+ .+.|+.++ .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666543 33332 578889999999999999999 88886655564 2 3467 57899999 99999
Q ss_pred cEEEEEE
Q 014118 68 SFVVVML 74 (430)
Q Consensus 68 stI~vmv 74 (430)
+.|++=.
T Consensus 210 dII~fQ~ 216 (530)
T 2ylm_A 210 DIIVFQK 216 (530)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9887754
No 347
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.80 E-value=96 Score=23.36 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred ccChHHHHHHHHHHH-cCCChhHHHHHHHHcC
Q 014118 381 TVTPEEREAIERLEA-MGFDRALVLEVFFACN 411 (430)
Q Consensus 381 ~lt~ee~~aI~rL~~-lGF~r~~viqAy~aCd 411 (430)
.||+-|++.|..+.. .||+.++|..|+--|-
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~ 48 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREAV 48 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 478999999988775 6999999999998883
No 348
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.38 E-value=1.5e+02 Score=23.25 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.5
Q ss_pred HHHHHHHc-CC-ChhHHHHHHHHcCCCHHHHHHHHhhcC
Q 014118 389 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDHM 425 (430)
Q Consensus 389 aI~rL~~l-GF-~r~~viqAy~aCdkNe~~Aan~L~~~~ 425 (430)
-+++|+++ |. |-...-+||-|.+.|...|+.||-+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 47888888 74 556667899999999999999998753
No 349
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.26 E-value=55 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 014118 187 WDRETVIRALRAAYNNPERAVEYLYSGIP 215 (430)
Q Consensus 187 f~reqV~~ALrAafnNpdRAVEyL~~GIP 215 (430)
|+|+-+++||+.+-+|..+|.+.| ||.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L--GIS 67 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL--NMH 67 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 678889999999999999999987 554
No 350
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=20.24 E-value=3e+02 Score=23.92 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=43.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCc----EEE-----------------eCCeec-CCcCchhhcccCCCcEE
Q 014118 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ----MLI-----------------HQGKVL-KDVTTLEENKVAENSFV 70 (430)
Q Consensus 13 ~~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~Q----kLI-----------------y~GKiL-~Dd~tLsdygI~e~stI 70 (430)
+.|-...+.|+.+|-..|.+.... .+...- ++| +.|+.- +|++||.+++..-|+.|
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 566778999999999999876442 111111 223 333333 56899999999999999
Q ss_pred EEEEecC
Q 014118 71 VVMLTKS 77 (430)
Q Consensus 71 ~vmv~k~ 77 (430)
.|.+..+
T Consensus 134 dvaI~pP 140 (143)
T 4a6q_A 134 DIAITPP 140 (143)
T ss_dssp EEEEECG
T ss_pred EEEEeCC
Confidence 9988643
No 351
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=20.16 E-value=33 Score=28.80 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCccchhHHHHHHhhhCHHHHHHHHH
Q 014118 313 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 348 (430)
Q Consensus 313 ~f~~lR~~vq~nP~lL~~~lqqi~~~nP~l~~lI~~ 348 (430)
+.+.+.++...||+++..||+.+.+++|+-++.|++
T Consensus 16 D~~~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~~ 51 (123)
T 3iqt_A 16 DWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEE 51 (123)
T ss_dssp CHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999999999999988887763
No 352
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=20.10 E-value=75 Score=29.04 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 014118 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (430)
Q Consensus 172 ~e~~V~~i~eMG~~~f~reqV~~ALrAa 199 (430)
.++.+.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 478999999999 9999999999886
No 353
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=20.07 E-value=1.7e+02 Score=23.51 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=39.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeec-CCcCchhhc--ccCCCcEEEEEEe
Q 014118 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (430)
Q Consensus 14 ~IeV~~s~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GKiL-~Dd~tLsdy--gI~e~stI~vmv~ 75 (430)
.+-|+.+.||.++...|.++.+ +. ..-|+.+...+ ..+.+++++ +.+++.+|+|.-+
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys 90 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYA 90 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4567788999999999999988 54 55554444244 457777665 3344667877654
Done!