BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014120
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 20 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 68
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 69 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 96
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 20 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 68
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 69 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 96
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 43 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 91
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 92 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 119
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 37 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 85
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 86 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 113
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 26 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 74
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 75 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 102
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 24 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 72
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 73 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 100
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 20 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 68
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 69 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 96
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 20 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 68
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 69 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 96
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 20 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 68
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 69 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 96
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 25 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 73
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 74 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 101
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 25 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 73
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 74 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 101
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 112 LDSNRCGLERVYINGVNVHSVD----IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167
D +C R G N + + IK+ L+P V LTH K ++
Sbjct: 24 FDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYI--LTHF---------KGVW 72
Query: 168 NQISELPFLEYLALHYCMKLRSINISSP 195
N ++ +PFL L + Y + RS I SP
Sbjct: 73 NIVNNIPFLRSLIMKYVLTSRSYLIDSP 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,200,388
Number of Sequences: 62578
Number of extensions: 472204
Number of successful extensions: 1306
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 20
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)