Query 014120
Match_columns 430
No_of_seqs 431 out of 2200
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.5 2.7E-14 5.9E-19 158.9 10.8 63 28-93 85-150 (968)
2 PLN00113 leucine-rich repeat r 99.5 7.5E-14 1.6E-18 155.4 9.7 59 35-94 139-199 (968)
3 PLN03210 Resistant to P. syrin 99.4 3.6E-12 7.8E-17 143.4 12.4 90 24-116 600-692 (1153)
4 KOG4194 Membrane glycoprotein 99.3 6.5E-13 1.4E-17 131.4 -0.5 160 18-182 83-253 (873)
5 PLN03210 Resistant to P. syrin 99.3 3.9E-11 8.4E-16 135.1 13.4 205 18-225 616-834 (1153)
6 KOG4194 Membrane glycoprotein 99.0 5.1E-11 1.1E-15 118.2 1.4 211 12-226 172-426 (873)
7 KOG4341 F-box protein containi 98.8 2.2E-10 4.8E-15 109.7 -2.2 275 37-339 139-439 (483)
8 PRK15387 E3 ubiquitin-protein 98.8 1.1E-08 2.3E-13 108.8 7.9 193 9-226 199-392 (788)
9 KOG2120 SCF ubiquitin ligase, 98.8 2.6E-10 5.5E-15 104.9 -4.7 198 6-206 154-374 (419)
10 cd00116 LRR_RI Leucine-rich re 98.7 2E-08 4.4E-13 97.3 6.5 60 35-94 22-92 (319)
11 KOG0444 Cytoskeletal regulator 98.7 6.8E-10 1.5E-14 111.1 -4.6 75 18-94 108-184 (1255)
12 KOG0618 Serine/threonine phosp 98.7 3.4E-09 7.3E-14 110.6 0.0 85 118-205 210-297 (1081)
13 KOG0444 Cytoskeletal regulator 98.6 4.6E-10 1E-14 112.3 -7.4 55 16-70 129-185 (1255)
14 KOG2120 SCF ubiquitin ligase, 98.6 4.6E-09 9.9E-14 96.8 -1.4 172 35-207 158-350 (419)
15 cd00116 LRR_RI Leucine-rich re 98.5 2.6E-08 5.6E-13 96.5 1.2 214 11-226 23-288 (319)
16 KOG3207 Beta-tubulin folding c 98.5 1.4E-08 2.9E-13 98.2 -1.1 191 34-225 119-335 (505)
17 KOG0617 Ras suppressor protein 98.5 2.1E-09 4.5E-14 91.6 -6.1 154 25-183 23-182 (264)
18 PRK15387 E3 ubiquitin-protein 98.5 3.7E-07 8.1E-12 97.3 8.2 91 11-116 222-313 (788)
19 KOG4341 F-box protein containi 98.4 1.6E-08 3.4E-13 97.3 -2.8 271 31-332 159-459 (483)
20 PRK15370 E3 ubiquitin-protein 98.4 5.2E-07 1.1E-11 96.4 7.2 195 10-225 177-376 (754)
21 PF14580 LRR_9: Leucine-rich r 98.4 2.1E-07 4.6E-12 81.7 2.7 130 31-183 14-149 (175)
22 KOG0618 Serine/threonine phosp 98.3 6.5E-08 1.4E-12 101.2 -3.3 48 23-70 274-322 (1081)
23 PRK15370 E3 ubiquitin-protein 98.2 2.9E-06 6.3E-11 90.8 8.7 44 23-70 209-253 (754)
24 KOG3207 Beta-tubulin folding c 98.2 1.8E-07 4E-12 90.5 -0.4 150 35-203 171-334 (505)
25 KOG0472 Leucine-rich repeat pr 98.1 2.9E-08 6.2E-13 95.0 -8.9 187 16-210 71-289 (565)
26 KOG0617 Ras suppressor protein 98.0 7.3E-08 1.6E-12 82.2 -6.7 137 20-161 40-185 (264)
27 KOG1259 Nischarin, modulator o 98.0 1E-06 2.2E-11 81.6 -1.1 128 56-185 282-410 (490)
28 KOG1909 Ran GTPase-activating 98.0 2.2E-06 4.8E-11 81.0 0.9 81 145-226 181-280 (382)
29 PF14580 LRR_9: Leucine-rich r 97.9 9.5E-06 2.1E-10 71.3 4.3 100 15-116 21-124 (175)
30 KOG0472 Leucine-rich repeat pr 97.8 1.1E-07 2.4E-12 91.1 -10.7 154 23-183 147-306 (565)
31 KOG1947 Leucine rich repeat pr 97.8 3.8E-06 8.3E-11 86.0 -0.5 61 56-116 241-306 (482)
32 PF13855 LRR_8: Leucine rich r 97.7 1.9E-05 4.1E-10 56.7 1.3 56 37-93 2-59 (61)
33 PF08387 FBD: FBD; InterPro: 97.6 5.5E-06 1.2E-10 57.1 -1.8 41 365-406 7-47 (51)
34 KOG3665 ZYG-1-like serine/thre 97.6 2.9E-05 6.3E-10 82.5 2.5 146 35-183 121-284 (699)
35 KOG4237 Extracellular matrix p 97.5 2.9E-05 6.2E-10 74.7 0.9 190 19-212 73-338 (498)
36 PF13855 LRR_8: Leucine rich r 97.5 0.00016 3.5E-09 51.8 4.5 56 13-70 3-61 (61)
37 KOG4237 Extracellular matrix p 97.4 1.7E-05 3.6E-10 76.3 -1.7 63 36-99 67-131 (498)
38 KOG1909 Ran GTPase-activating 97.4 8.6E-05 1.9E-09 70.4 2.3 204 2-205 47-308 (382)
39 KOG1859 Leucine-rich repeat pr 97.3 1.9E-05 4.1E-10 81.3 -3.8 154 29-184 102-289 (1096)
40 KOG4658 Apoptotic ATPase [Sign 97.3 5.4E-05 1.2E-09 82.6 -0.7 86 25-112 559-649 (889)
41 COG4886 Leucine-rich repeat (L 97.1 0.00026 5.6E-09 70.9 2.5 168 31-205 111-287 (394)
42 COG4886 Leucine-rich repeat (L 97.1 0.00043 9.3E-09 69.3 3.6 180 40-227 97-288 (394)
43 KOG2982 Uncharacterized conser 97.1 0.00023 5E-09 66.3 1.4 179 11-190 71-265 (418)
44 KOG1947 Leucine rich repeat pr 97.0 0.00017 3.6E-09 73.8 0.1 128 59-187 162-308 (482)
45 PRK15386 type III secretion pr 96.9 0.0021 4.5E-08 63.7 6.7 68 35-113 51-120 (426)
46 PLN03150 hypothetical protein; 96.9 0.0011 2.5E-08 70.3 5.2 84 59-163 419-504 (623)
47 KOG1259 Nischarin, modulator o 96.8 0.00032 6.8E-09 65.4 0.1 121 36-162 284-412 (490)
48 PF12799 LRR_4: Leucine Rich r 96.7 0.0012 2.6E-08 43.8 2.6 34 37-70 2-36 (44)
49 PLN03150 hypothetical protein; 96.7 0.0017 3.6E-08 69.0 4.6 78 38-116 420-501 (623)
50 KOG2982 Uncharacterized conser 96.7 0.00095 2.1E-08 62.3 2.1 63 32-94 41-108 (418)
51 KOG4658 Apoptotic ATPase [Sign 96.6 0.00041 8.8E-09 75.8 -0.5 110 23-136 533-651 (889)
52 KOG3665 ZYG-1-like serine/thre 96.6 0.0019 4E-08 69.0 4.1 58 126-184 172-230 (699)
53 PF12799 LRR_4: Leucine Rich r 96.3 0.0035 7.6E-08 41.6 2.5 35 58-94 1-35 (44)
54 KOG0532 Leucine-rich repeat (L 96.2 0.00022 4.7E-09 71.8 -5.4 89 24-116 86-177 (722)
55 KOG2739 Leucine-rich acidic nu 96.1 0.0016 3.5E-08 59.7 0.4 106 11-116 18-127 (260)
56 KOG1644 U2-associated snRNP A' 95.9 0.018 3.8E-07 51.1 5.6 90 25-116 28-124 (233)
57 KOG2739 Leucine-rich acidic nu 95.9 0.0026 5.6E-08 58.4 0.5 35 81-115 41-75 (260)
58 smart00579 FBD domain in FBox 95.7 0.001 2.2E-08 49.3 -2.3 38 368-406 1-38 (72)
59 KOG0531 Protein phosphatase 1, 95.5 0.0015 3.3E-08 65.9 -2.7 82 32-116 91-173 (414)
60 KOG0532 Leucine-rich repeat (L 94.7 0.0093 2E-07 60.5 0.3 157 23-184 108-270 (722)
61 PRK15386 type III secretion pr 94.7 0.1 2.2E-06 51.9 7.6 135 55-205 49-187 (426)
62 KOG2123 Uncharacterized conser 94.5 0.0023 5E-08 59.3 -4.1 54 57-114 18-72 (388)
63 KOG1644 U2-associated snRNP A' 94.4 0.068 1.5E-06 47.5 4.8 75 18-94 47-124 (233)
64 KOG0531 Protein phosphatase 1, 94.1 0.015 3.4E-07 58.6 0.3 100 81-184 93-196 (414)
65 COG5238 RNA1 Ran GTPase-activa 94.0 0.061 1.3E-06 50.0 3.9 57 149-205 185-252 (388)
66 KOG2123 Uncharacterized conser 94.0 0.0078 1.7E-07 55.9 -1.9 77 106-184 20-98 (388)
67 COG5238 RNA1 Ran GTPase-activa 93.4 0.074 1.6E-06 49.4 3.4 39 146-184 211-252 (388)
68 PF13306 LRR_5: Leucine rich r 93.3 0.07 1.5E-06 43.9 2.9 84 28-113 3-89 (129)
69 KOG1859 Leucine-rich repeat pr 92.9 0.0043 9.3E-08 64.5 -5.9 103 54-162 183-292 (1096)
70 PF07723 LRR_2: Leucine Rich R 92.6 0.16 3.4E-06 29.4 2.8 25 59-83 1-26 (26)
71 KOG3864 Uncharacterized conser 91.5 0.04 8.7E-07 48.9 -0.9 90 24-113 89-184 (221)
72 KOG4579 Leucine-rich repeat (L 90.1 0.048 1E-06 45.6 -1.6 75 19-95 33-112 (177)
73 PF13516 LRR_6: Leucine Rich r 88.3 0.29 6.2E-06 27.5 1.3 22 57-78 1-22 (24)
74 PF13306 LRR_5: Leucine rich r 86.7 0.48 1E-05 38.8 2.3 60 52-113 6-66 (129)
75 PF07723 LRR_2: Leucine Rich R 85.7 0.54 1.2E-05 27.2 1.5 25 150-174 1-26 (26)
76 KOG3864 Uncharacterized conser 83.7 0.36 7.9E-06 43.0 0.2 43 146-188 122-165 (221)
77 smart00367 LRR_CC Leucine-rich 83.2 1.1 2.5E-05 25.6 2.1 22 57-78 1-23 (26)
78 PF13504 LRR_7: Leucine rich r 82.7 0.74 1.6E-05 23.6 1.1 12 59-70 2-13 (17)
79 KOG4579 Leucine-rich repeat (L 80.5 0.24 5.2E-06 41.5 -2.0 59 12-70 52-112 (177)
80 smart00368 LRR_RI Leucine rich 79.7 1.5 3.2E-05 25.7 1.8 22 58-79 2-23 (28)
81 PF08387 FBD: FBD; InterPro: 76.1 5.2 0.00011 27.2 3.9 39 293-333 12-50 (51)
82 PF00560 LRR_1: Leucine Rich R 74.5 1.9 4.1E-05 23.6 1.2 10 38-47 2-11 (22)
83 smart00370 LRR Leucine-rich re 57.2 6.7 0.00014 22.2 1.2 14 57-70 1-14 (26)
84 smart00369 LRR_TYP Leucine-ric 57.2 6.7 0.00014 22.2 1.2 14 57-70 1-14 (26)
85 KOG3763 mRNA export factor TAP 56.6 12 0.00026 38.6 3.6 32 150-181 271-308 (585)
86 smart00579 FBD domain in FBox 48.2 27 0.00058 25.3 3.5 40 295-336 5-44 (72)
87 PF05952 ComX: Bacillus compet 38.2 7 0.00015 27.3 -0.9 23 391-413 4-26 (57)
88 smart00365 LRR_SD22 Leucine-ri 35.8 24 0.00051 20.4 1.2 14 57-70 1-14 (26)
89 KOG3763 mRNA export factor TAP 24.0 81 0.0017 32.8 3.4 59 35-95 217-282 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.53 E-value=2.7e-14 Score=158.91 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCccccCCCCccEEEEcCccCCC--CC-CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 28 LPQIVFYLKSIYVLDFEFCKLEP--PR-STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 28 LP~~l~~~~~L~~L~Ls~~~~~~--~~-~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
+|..+..+++|++|+|+++.+.. |. .+.++++|++|+|++|.+++.. + ...+++|++|++++|
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n 150 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNN 150 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCC
Confidence 34455556666666666655432 22 2335566666666665543211 1 123445555555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=7.5e-14 Score=155.41 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=27.7
Q ss_pred CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
+++|++|+|++|.+.. |..+.++++|++|+|++|.++.. ++..+.++++|++|++++|.
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCC
Confidence 4455555555544321 33445555555555555544321 12334445555555555543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=3.6e-12 Score=143.40 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=41.0
Q ss_pred ccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-- 100 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~-- 100 (430)
....+|..+ ..++|+.|+++++.+.. +..+..+++|+.|+|+++.... .++ -++.+++|+.|+|++|..+..+.
T Consensus 600 ~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 600 PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchh
Confidence 345555443 45566666666554332 3334455555555555543210 011 13345555555555554433322
Q ss_pred cCCCCCcCEEEcCCCc
Q 014120 101 LLGLNKLKEIKLDSNR 116 (430)
Q Consensus 101 l~~~~~L~~L~l~~c~ 116 (430)
+..+++|+.|++++|.
T Consensus 677 i~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCE 692 (1153)
T ss_pred hhccCCCCEEeCCCCC
Confidence 2233444444444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.26 E-value=6.5e-13 Score=131.38 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=98.9
Q ss_pred EEecCCccccCC-ccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
|+++++....+- ..+.++++|+.+++..+.+.. |....-..+|+.|+|.+|.|+.-. ...++.+|.||.|||+.+..
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchh
Confidence 555555555553 346678999999999887765 433344556999999999874322 23355678899999887532
Q ss_pred --CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~ 167 (430)
++.-.+..-.++++|+++++. +..+.. ...+|.+|.++.+.+. ..-.|.+++.|+.|+|..|.| ..++
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~--It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i--rive 237 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNR--ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI--RIVE 237 (873)
T ss_pred hcccCCCCCCCCCceEEeecccc--ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce--eeeh
Confidence 222223323578888887764 333321 2346777777762222 134566778888888877776 3332
Q ss_pred H-HhcCCCccceeccc
Q 014120 168 N-QISELPFLEYLALH 182 (430)
Q Consensus 168 ~-l~~~~p~Le~L~L~ 182 (430)
- -+.++|+|+.|.+.
T Consensus 238 ~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQ 253 (873)
T ss_pred hhhhcCchhhhhhhhh
Confidence 2 35667777777765
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=3.9e-11 Score=135.14 Aligned_cols=205 Identities=19% Similarity=0.138 Sum_probs=119.6
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l 96 (430)
|++..+....+|..+..+++|+.|+|+++. +...+.+..+++|++|+|++|.... .++..+.++++|+.|++++|..+
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCc
Confidence 344445677788888888999999998864 3332357778999999999885422 24556778889999999999887
Q ss_pred CccccC-CCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCC---h--HHH-HH
Q 014120 97 KSLQLL-GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSIT---D--KWL-YN 168 (430)
Q Consensus 97 ~~l~l~-~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~---~--~~l-~~ 168 (430)
+.+... ++++|+.|++++|. .+..+.-..++|+.|++++..+. .+.. ..+++|+.|.+.++... + ..+ +.
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCcccccccc-ccccccccccccccchhhccccccccchh
Confidence 776543 46889999999887 56555434567888887762211 1111 13444555544432210 0 000 01
Q ss_pred HhcCCCccceecccccccccccccc---ccccceEeccccccccccc--ccCCCcceEEecc
Q 014120 169 QISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE--LDTPNLSIFKCFN 225 (430)
Q Consensus 169 l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~ 225 (430)
....+++|+.|++++|+.+..+|.. .++|+.|++++|..++.+. +..++|+++.+.|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 1122345555555555544444432 3445555555555444432 2334455555444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=5.1e-11 Score=118.20 Aligned_cols=211 Identities=21% Similarity=0.210 Sum_probs=105.4
Q ss_pred CceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 12 NVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
++....|++.++.+..+-.. |-++.+|..|+|+.+.+.. +..|.++|+|+.|+|..|.+.... .--+.+++.|+.|
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNL 250 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhh
Confidence 34444455555667777544 4446788888888876554 356777888888888888763211 1124566667766
Q ss_pred EeeeCC--CCCccccCCCCCcCEEEcCCCc----------------------CCceEeEee----ccceeEEEeecCCCC
Q 014120 89 NINNCP--GLKSLQLLGLNKLKEIKLDSNR----------------------CGLERVYIN----GVNVHSVDIKVYLEP 140 (430)
Q Consensus 89 ~L~~c~--~l~~l~l~~~~~L~~L~l~~c~----------------------~~l~~l~i~----~p~L~~L~l~~~~~~ 140 (430)
.|..+. .|++-.+.++.++++|++..+. ..++.+.++ ++.|+.|+++.+.+.
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 665543 2333333344444444444332 023333332 455555555542211
Q ss_pred --ceeccCCCCcCceEEccCCCCChHHHHH-HhcCCCccceecccccccccccc------ccccccceEecccccccccc
Q 014120 141 --CEVNVSSCKNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSIN------ISSPRLKELVFERCEELVEF 211 (430)
Q Consensus 141 --~~~~~~~l~~L~~L~L~~~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~------~~~~~L~~L~l~~c~~L~~~ 211 (430)
.+..|..++.|+.|+|+.|.+ +.+.+ .+.++.+|+.|++.+..--..+. -..++|+.|.+.+. +++.+
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi--~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I 407 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSI--DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSI 407 (873)
T ss_pred cCChhHHHHHHHhhhhcccccch--HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeec
Confidence 123344445555555555555 33332 34445556666654332111110 01455555555554 44443
Q ss_pred c----ccCCCcceEEecce
Q 014120 212 E----LDTPNLSIFKCFNY 226 (430)
Q Consensus 212 ~----i~~p~L~~~~~~~~ 226 (430)
. ...+.|+.+.+.++
T Consensus 408 ~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chhhhccCcccceecCCCC
Confidence 3 23355555555444
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=2.2e-10 Score=109.75 Aligned_cols=275 Identities=13% Similarity=0.127 Sum_probs=153.4
Q ss_pred CccEEEEcCccCCC--C--CCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCcccc----CCCCCc
Q 014120 37 SIYVLDFEFCKLEP--P--RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQL----LGLNKL 107 (430)
Q Consensus 37 ~L~~L~Ls~~~~~~--~--~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l----~~~~~L 107 (430)
-|+.|.+.||.-.. + ....++|+++.|.+.+|. +|+..+..+...|+.|++|++..|..++...+ .+|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47888888875433 1 344678999999998885 48888888888999999999999988776544 378999
Q ss_pred CEEEcCCCcCCce-----EeEeeccceeEEEeec-CCCCc---eeccCCCCcCceEEccCC-CCChHHHHHHhcCCCccc
Q 014120 108 KEIKLDSNRCGLE-----RVYINGVNVHSVDIKV-YLEPC---EVNVSSCKNLTHLRLDGL-SITDKWLYNQISELPFLE 177 (430)
Q Consensus 108 ~~L~l~~c~~~l~-----~l~i~~p~L~~L~l~~-~~~~~---~~~~~~l~~L~~L~L~~~-~i~~~~l~~l~~~~p~Le 177 (430)
+++++++|. .+. .+.-++..++.+...| ...+. ...-..+.-+..+++..+ .++|..+..+-.+|..|+
T Consensus 219 ~~lNlSwc~-qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCP-QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCc-hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999987 332 2222333444443333 11110 000123334444554443 455655555556666777
Q ss_pred eeccccccccccccc-----cccccceEecccccccccccccCCCcceEEecceeeEEeccccccceeEEEeeecCCchH
Q 014120 178 YLALHYCMKLRSINI-----SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNE 252 (430)
Q Consensus 178 ~L~L~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~ 252 (430)
.|+.++|..+....+ ..++|+.+.+..|.++++..+.. ..-+...|.+.++.- . +. .
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--------------l~rn~~~Le~l~~e~--~-~~-~ 359 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM--------------LGRNCPHLERLDLEE--C-GL-I 359 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh--------------hhcCChhhhhhcccc--c-ce-e
Confidence 777766665533222 25666666666665554433211 001112222222200 0 00 0
Q ss_pred HHHHHHHHHhhCCCCceEeeeEeeccceecCccccccc--CCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCcee
Q 014120 253 WYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREIL--CPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETL 330 (430)
Q Consensus 253 ~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~--~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L 330 (430)
.-..+..+-.+...++.|++..|+.... +..+... ..-.-.+..+++...| ...+..-.-|..||+||.+
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD---~gi~~l~~~~c~~~~l~~lEL~n~p-----~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITD---EGIRHLSSSSCSLEGLEVLELDNCP-----LITDATLEHLSICRNLERI 431 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhh---hhhhhhhhccccccccceeeecCCC-----CchHHHHHHHhhCccccee
Confidence 0013344445667788888876654321 1111111 1123556667777765 3445555667999999996
Q ss_pred eEecCchhh
Q 014120 331 SIEWPNINF 339 (430)
Q Consensus 331 ~i~~~~~~~ 339 (430)
++ ++++..
T Consensus 432 ~l-~~~q~v 439 (483)
T KOG4341|consen 432 EL-IDCQDV 439 (483)
T ss_pred ee-echhhh
Confidence 66 244433
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=1.1e-08 Score=108.84 Aligned_cols=193 Identities=17% Similarity=0.066 Sum_probs=117.4
Q ss_pred HhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 9 FASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 9 ~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
...+-..| +++.+....+|+.+. .+|+.|.++++.+.. |. ..++|++|+|++|.++. ++. ..++|+.
T Consensus 199 l~~~~~~L--dLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~ 266 (788)
T PRK15387 199 LNNGNAVL--NVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE 266 (788)
T ss_pred hcCCCcEE--EcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence 33444444 455556778998775 489999999987664 32 36899999999998853 222 2468999
Q ss_pred EEeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH
Q 014120 88 ININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 88 L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~ 167 (430)
|++++|. ++.+.- ...+|+.|++++|. +..+....++|+.|+++++.+..... -..+|+.|.+.+|.++ .++
T Consensus 267 L~Ls~N~-L~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~--~LP 338 (788)
T PRK15387 267 LSIFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLT--SLP 338 (788)
T ss_pred eeccCCc-hhhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC--CcccccccccccCccc--ccc
Confidence 9998874 333322 13578888888764 44443345778888887732220001 1235777788887773 333
Q ss_pred HHhcCCCccceeccccccccccccccccccceEecccccccccccccCCCcceEEecce
Q 014120 168 NQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNY 226 (430)
Q Consensus 168 ~l~~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~ 226 (430)
.+ .+.|+.|++++ +.+..+|...++|+.|+++++ .++.+.-...+|..+.+.++
T Consensus 339 ~l---p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N 392 (788)
T PRK15387 339 TL---PSGLQELSVSD-NQLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGN 392 (788)
T ss_pred cc---ccccceEecCC-CccCCCCCCCcccceehhhcc-ccccCcccccccceEEecCC
Confidence 22 13678888865 345556655667777777765 45544322234555544443
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-10 Score=104.92 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=124.0
Q ss_pred HHHHhCCceEEEEEecCCccccCCcccc-CCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcC
Q 014120 6 SYAFASNVKELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG 81 (430)
Q Consensus 6 ~~a~~~~v~~L~L~~~~~~~~~LP~~l~-~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~ 81 (430)
...+++||..+.+--..-.--.+.+.+. .-..|++|+|+.-.+.. ..-+..|.+|+.|.|.++.++|.. ..-+..
T Consensus 154 ~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAk 232 (419)
T KOG2120|consen 154 GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAK 232 (419)
T ss_pred HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhc
Confidence 4456788877766322111111111111 12459999999854433 134567899999999999997764 444556
Q ss_pred CCCccEEEeeeCCCCCccc----cCCCCCcCEEEcCCCcCCceEe-E----eeccceeEEEeec--CCCC-c--eeccCC
Q 014120 82 CPLIEYININNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLERV-Y----INGVNVHSVDIKV--YLEP-C--EVNVSS 147 (430)
Q Consensus 82 ~p~Le~L~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~~l-~----i~~p~L~~L~l~~--~~~~-~--~~~~~~ 147 (430)
-.+|+.|+|+.|+++++.. +++|..|..|++++|. -..+. . --.++|..|+++| .... . ..-...
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 6789999999999987643 4578999999999997 33222 1 1246777777777 1111 0 111256
Q ss_pred CCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccccc---ccc-cccccceEeccccc
Q 014120 148 CKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRS---INI-SSPRLKELVFERCE 206 (430)
Q Consensus 148 l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l~~---l~~-~~~~L~~L~l~~c~ 206 (430)
|++|..|+|+.+. ++++.+. .+-.++.|++|+++.|..+.. +.. +.|+|.+|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 7888888887664 4443333 344678888888888876521 111 35677777777763
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=2e-08 Score=97.26 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCC--hHH---HHHHhcCCCCccEEEeeeCC
Q 014120 35 LKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVD--DEV---IRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~--~~~---l~~l~~~~p~Le~L~L~~c~ 94 (430)
..+|+.|+++++.+.. +......++|++|+++++.+. ... +...+..+++|+.|++++|.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3446666666655422 122334555666666655543 111 22233445566666666554
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.69 E-value=6.8e-10 Score=111.13 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=37.7
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
||++.+.....|..+-..+++-+|+||++.+.. | ..+.+++.|-.|+||+|.+. .++.-+..+.+|+.|.|++++
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCCh
Confidence 444445555555555555666666666654433 2 33455555555555555441 122233334455555555543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.68 E-value=3.4e-09 Score=110.59 Aligned_cols=85 Identities=16% Similarity=0.027 Sum_probs=48.2
Q ss_pred CceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc---c
Q 014120 118 GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---S 194 (430)
Q Consensus 118 ~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~ 194 (430)
.+..+.+..|+++.+...............-.+|++++++.+.+ ..+++.+..|++|+.+...... +..++.. .
T Consensus 210 ~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~ 286 (1081)
T KOG0618|consen 210 QLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGACANLEALNANHNR-LVALPLRISRI 286 (1081)
T ss_pred ccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhcccceEecccchh-HHhhHHHHhhh
Confidence 34455555566666555441111011112235788999999988 5677888899999999886432 2333322 2
Q ss_pred cccceEecccc
Q 014120 195 PRLKELVFERC 205 (430)
Q Consensus 195 ~~L~~L~l~~c 205 (430)
.+|+.|.+..|
T Consensus 287 ~~L~~l~~~~n 297 (1081)
T KOG0618|consen 287 TSLVSLSAAYN 297 (1081)
T ss_pred hhHHHHHhhhh
Confidence 34444544444
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.64 E-value=4.6e-10 Score=112.27 Aligned_cols=55 Identities=27% Similarity=0.367 Sum_probs=42.3
Q ss_pred EEEEecCCccccCCccccC-CCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120 16 LKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 16 L~L~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~ 70 (430)
++|+++.+.+-++|.++|- +..|-.|+||++.+.. |+....+..|++|+|++|.+
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 6777877788888877654 7778888888887765 56777788888888888765
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.6e-09 Score=96.79 Aligned_cols=172 Identities=16% Similarity=0.264 Sum_probs=97.3
Q ss_pred CCCccEEEEcCccCCCC---CCCCCC-CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcC
Q 014120 35 LKSIYVLDFEFCKLEPP---RSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLK 108 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~---~~~~~l-~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~ 108 (430)
-+.+.++.+.......| ..+.-+ +.|+.|||++..++...+..+++.|..|+.|+|.+..-=..+ .++.-.+|.
T Consensus 158 ~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 158 SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence 35567777776555554 222223 369999999999999999999999999999999986431111 233447899
Q ss_pred EEEcCCCcCCceEeEe-----eccceeEEEeec-CCC-C-ceeccCCC-CcCceEEccCCC--CChHHHHHHhcCCCccc
Q 014120 109 EIKLDSNRCGLERVYI-----NGVNVHSVDIKV-YLE-P-CEVNVSSC-KNLTHLRLDGLS--ITDKWLYNQISELPFLE 177 (430)
Q Consensus 109 ~L~l~~c~~~l~~l~i-----~~p~L~~L~l~~-~~~-~-~~~~~~~l-~~L~~L~L~~~~--i~~~~l~~l~~~~p~Le 177 (430)
.|+++.|. ++.+... +|..|..|+++- ... + ....+... ++|+.|+|+|+. +.+..+..+...||.|.
T Consensus 238 ~lnlsm~s-G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 238 RLNLSMCS-GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred eecccccc-ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 99999987 6654322 244444444432 110 0 00111111 345555555442 22234444555566666
Q ss_pred eecccccccccccc----ccccccceEecccccc
Q 014120 178 YLALHYCMKLRSIN----ISSPRLKELVFERCEE 207 (430)
Q Consensus 178 ~L~L~~c~~l~~l~----~~~~~L~~L~l~~c~~ 207 (430)
.||+++|..++.-- .-.+.|++|.++.|..
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 66665555443210 0134555555555543
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.52 E-value=2.6e-08 Score=96.50 Aligned_cols=214 Identities=17% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCceEEEEEecCC---ccccCCccccCCCCccEEEEcCccCC--C------CCCCCCCCCCCEEEEeeecCCh---HHHH
Q 014120 11 SNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLE--P------PRSTVTLFSLRKLCLSFVHVDD---EVIR 76 (430)
Q Consensus 11 ~~v~~L~L~~~~~---~~~~LP~~l~~~~~L~~L~Ls~~~~~--~------~~~~~~l~~L~~L~Ls~~~~~~---~~l~ 76 (430)
.+++++.+.-..- ....++..+...+++++|+++++... . +..+..+++|+.|++++|.+.. ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3466666655431 23456767777888999999887654 1 1245568899999999998853 2333
Q ss_pred HHhcCCCCccEEEeeeCCCC----Ccc--ccCCC-CCcCEEEcCCCc-C--CceEe---EeeccceeEEEeecCCCC---
Q 014120 77 DMVAGCPLIEYININNCPGL----KSL--QLLGL-NKLKEIKLDSNR-C--GLERV---YINGVNVHSVDIKVYLEP--- 140 (430)
Q Consensus 77 ~l~~~~p~Le~L~L~~c~~l----~~l--~l~~~-~~L~~L~l~~c~-~--~l~~l---~i~~p~L~~L~l~~~~~~--- 140 (430)
.+... ++|++|++++|..- ..+ .+..+ ++|+.|++++|. . ....+ ...+++|++|++++....
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44444 67999999988532 111 23345 789999999886 1 01111 112467888888773221
Q ss_pred ---ceeccCCCCcCceEEccCCCCChHH---HHHHhcCCCccceeccccccccc----cccc----cccccceEeccccc
Q 014120 141 ---CEVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLR----SINI----SSPRLKELVFERCE 206 (430)
Q Consensus 141 ---~~~~~~~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~~l~----~l~~----~~~~L~~L~l~~c~ 206 (430)
....+..+++|+.|++++|.+++.. +...+..++.|+.|++++|.--. .+.. ..++|++|++++|
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n- 260 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN- 260 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-
Confidence 0112345679999999999987643 44567788999999999875321 1111 1368999999998
Q ss_pred ccccc--------cccCCCcceEEecce
Q 014120 207 ELVEF--------ELDTPNLSIFKCFNY 226 (430)
Q Consensus 207 ~L~~~--------~i~~p~L~~~~~~~~ 226 (430)
.+++. .-..++++++.+.++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 55411 122356676666554
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.4e-08 Score=98.18 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=129.3
Q ss_pred CCCCccEEEEcCccCCCC---CCCCCCCCCCEEEEeeecC-ChHHHHHHhcCCCCccEEEeeeCCCC---CccccCCCCC
Q 014120 34 YLKSIYVLDFEFCKLEPP---RSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGL---KSLQLLGLNK 106 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~~---~~~~~l~~L~~L~Ls~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l---~~l~l~~~~~ 106 (430)
+.++|+...|.++....+ .....||+++.|+|++|-+ .+..+..++..+|+||.|+|+.+... .......+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 467888888988776553 2567899999999999988 67888899999999999999987531 1111123689
Q ss_pred cCEEEcCCCcC---CceEeEeeccceeEEEeecCC-CC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120 107 LKEIKLDSNRC---GLERVYINGVNVHSVDIKVYL-EP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL 181 (430)
Q Consensus 107 L~~L~l~~c~~---~l~~l~i~~p~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L 181 (430)
|+.|.+++|.- .+..+...+|+|+.|.+.++. +. ......-+..|+.|+|++|++-+...-.....+|.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999961 122233458999999888732 11 12223345689999999998854333346778999999999
Q ss_pred cccc--ccccccc-------cccccceEecccccccc---ccc--ccCCCcceEEecc
Q 014120 182 HYCM--KLRSINI-------SSPRLKELVFERCEELV---EFE--LDTPNLSIFKCFN 225 (430)
Q Consensus 182 ~~c~--~l~~l~~-------~~~~L~~L~l~~c~~L~---~~~--i~~p~L~~~~~~~ 225 (430)
+.|. .+...++ ..++|++|++..+ ++. ++. ...+++..+.+.+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence 8654 2222222 2578999988876 332 222 2335555555433
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.50 E-value=2.1e-09 Score=91.58 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=94.7
Q ss_pred cccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC-ccccC
Q 014120 25 IYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK-SLQLL 102 (430)
Q Consensus 25 ~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~-~l~l~ 102 (430)
...+| .+|.+.+++.|.||++.+.. |..+..+.+|+.|++++|++.+ ++..++.+|.|+.|+++-++... .-.+.
T Consensus 23 f~~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred Hhhcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccC
Confidence 44555 77899999999999987654 5677889999999999997754 46678888999999887653211 11234
Q ss_pred CCCCcCEEEcCCCc---CCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120 103 GLNKLKEIKLDSNR---CGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178 (430)
Q Consensus 103 ~~~~L~~L~l~~c~---~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~ 178 (430)
.+|.|..|+++.+. ..+..-.+.+..|+.|.++..... .+.+++++++|+.|.+..|++ -.++.-++.+..|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHH
Confidence 45777888877654 111111122333444444431111 234555666666666666655 445555555566666
Q ss_pred ecccc
Q 014120 179 LALHY 183 (430)
Q Consensus 179 L~L~~ 183 (430)
|.|.+
T Consensus 178 lhiqg 182 (264)
T KOG0617|consen 178 LHIQG 182 (264)
T ss_pred Hhccc
Confidence 66654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.46 E-value=3.7e-07 Score=97.26 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~ 89 (430)
.+++.|.+. .+....+|.. +++|++|++++|.+.. |. ..++|+.|+|++|.++. ++.+ .++|+.|+
T Consensus 222 ~~L~~L~L~--~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~--Lp~l---p~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIP--DNNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPAL---PSGLCKLW 288 (788)
T ss_pred cCCCEEEcc--CCcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchhh--hhhc---hhhcCEEE
Confidence 355665544 4567778853 5889999999987654 32 24688888888887642 2322 24566677
Q ss_pred eeeCCCCCccccCCCCCcCEEEcCCCc
Q 014120 90 INNCPGLKSLQLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~ 116 (430)
+++|. ++.+.. ..++|+.|++++|.
T Consensus 289 Ls~N~-Lt~LP~-~p~~L~~LdLS~N~ 313 (788)
T PRK15387 289 IFGNQ-LTSLPV-LPPGLQELSVSDNQ 313 (788)
T ss_pred CcCCc-cccccc-cccccceeECCCCc
Confidence 76653 333321 13566666666653
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=1.6e-08 Score=97.27 Aligned_cols=271 Identities=15% Similarity=0.189 Sum_probs=162.5
Q ss_pred cccCCCCccEEEEcCccCCCC----CCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCc----ccc
Q 014120 31 IVFYLKSIYVLDFEFCKLEPP----RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKS----LQL 101 (430)
Q Consensus 31 ~l~~~~~L~~L~Ls~~~~~~~----~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~----l~l 101 (430)
..-.|+++++|.+.+|..... .....+++|+.|+|..|. +|+..+..+..+||+|++|++++|+.++. -..
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 344599999999999874431 233679999999999975 59998998999999999999999987665 234
Q ss_pred CCCCCcCEEEcCCCcCCceE-----eEeeccceeEEEeec-CCCCceec----cCCCCcCceEEccCC-CCChHHHHHHh
Q 014120 102 LGLNKLKEIKLDSNRCGLER-----VYINGVNVHSVDIKV-YLEPCEVN----VSSCKNLTHLRLDGL-SITDKWLYNQI 170 (430)
Q Consensus 102 ~~~~~L~~L~l~~c~~~l~~-----l~i~~p~L~~L~l~~-~~~~~~~~----~~~l~~L~~L~L~~~-~i~~~~l~~l~ 170 (430)
.|+..++.+-..+|. ..+. +.-.++.+..+++.. ..+. ..+ -.+|..|+.|..+++ .+++..+..+.
T Consensus 239 rG~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred ccchhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhcccc-chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 577777777777776 2211 111233333333222 1111 111 135677888888765 56667778888
Q ss_pred cCCCccceeccccccccccccc-----cccccceEecccccccccc-----cccCCCcceEEecceeeEEecccccccee
Q 014120 171 SELPFLEYLALHYCMKLRSINI-----SSPRLKELVFERCEELVEF-----ELDTPNLSIFKCFNYVESFSSNALALSQT 240 (430)
Q Consensus 171 ~~~p~Le~L~L~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~~-----~i~~p~L~~~~~~~~~~~~~~~~~sL~~v 240 (430)
.++++|+.|.+..|+.+..... ..+.|+.+++..|...++- ....|.++.+......
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce------------- 383 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE------------- 383 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh-------------
Confidence 8888899998888886643322 3577888888877544322 2333444443332110
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHH
Q 014120 241 LLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCL 320 (430)
Q Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~L 320 (430)
.. .+.+. ..+...-.+...++.+.|.-+........+. .. .-++|+++.+..+.+ -+.+.+..+
T Consensus 384 -~i----tD~gi--~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---l~--~c~~Leri~l~~~q~----vtk~~i~~~ 447 (483)
T KOG4341|consen 384 -LI----TDEGI--RHLSSSSCSLEGLEVLELDNCPLITDATLEH---LS--ICRNLERIELIDCQD----VTKEAISRF 447 (483)
T ss_pred -hh----hhhhh--hhhhhccccccccceeeecCCCCchHHHHHH---Hh--hCcccceeeeechhh----hhhhhhHHH
Confidence 00 00000 0112222233455555665555432222111 11 235889888877641 123344677
Q ss_pred HhcCCCCceeeE
Q 014120 321 LWITPHAETLSI 332 (430)
Q Consensus 321 L~~cP~Le~L~i 332 (430)
-..+||+++.-.
T Consensus 448 ~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 448 ATHLPNIKVHAY 459 (483)
T ss_pred HhhCccceehhh
Confidence 899999987665
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.39 E-value=5.2e-07 Score=96.45 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=104.6
Q ss_pred hCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 10 ~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
..+..++. +.......+|..+ .++|+.|+|+++.+.. |..+ +++|++|++++|.++. ++..+ .++|+.|
T Consensus 177 ~~~~~~L~--L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L 246 (754)
T PRK15370 177 KNNKTELR--LKILGLTTIPACI--PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEM 246 (754)
T ss_pred ccCceEEE--eCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEE
Confidence 34454444 4444567778655 3578999999887654 3322 3689999999887752 22212 2468888
Q ss_pred EeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEee-ccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH
Q 014120 89 NINNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYIN-GVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL 166 (430)
Q Consensus 89 ~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~-~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l 166 (430)
+|++|. ++.+...-..+|+.|++++|. +..+.-. .++|+.|++++.... .+..+. ++|+.|++++|.++ .+
T Consensus 247 ~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt--~L 319 (754)
T PRK15370 247 ELSINR-ITELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT--AL 319 (754)
T ss_pred ECcCCc-cCcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc--cC
Confidence 888875 333322212567788887543 3333211 346777777763222 111111 35666677766663 22
Q ss_pred HHHhcCCCccceecccccccccccccc-ccccceEeccccccccccccc-CCCcceEEecc
Q 014120 167 YNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFELD-TPNLSIFKCFN 225 (430)
Q Consensus 167 ~~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~i~-~p~L~~~~~~~ 225 (430)
+..+ .++|+.|++++|. +..++.. +++|+.|++++| +++.+.-. .++|..+...+
T Consensus 320 P~~l--~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~ 376 (754)
T PRK15370 320 PETL--PPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSR 376 (754)
T ss_pred Cccc--cccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCC
Confidence 2211 2466666665543 3334332 346666666666 44433211 13444444443
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=2.1e-07 Score=81.68 Aligned_cols=130 Identities=22% Similarity=0.187 Sum_probs=44.0
Q ss_pred cccCCCCccEEEEcCccCCCCCCCC-CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--c-CCCCC
Q 014120 31 IVFYLKSIYVLDFEFCKLEPPRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--L-LGLNK 106 (430)
Q Consensus 31 ~l~~~~~L~~L~Ls~~~~~~~~~~~-~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l-~~~~~ 106 (430)
.+.++.+++.|+|.|+.+.....++ .+.+|+.|+|++|.++.- . -+..++.|+.|+++++.- +.+. + ..+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--E-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--c-CccChhhhhhcccCCCCC-CccccchHHhCCc
Confidence 3445667788888887665533444 577888888888877431 1 244567777777777542 2221 1 23566
Q ss_pred cCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh-HHH-HHHhcCCCccceecccc
Q 014120 107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-KWL-YNQISELPFLEYLALHY 183 (430)
Q Consensus 107 L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~l-~~l~~~~p~Le~L~L~~ 183 (430)
|++|.++++. +.+ ...-..++.+++|+.|+|.+|.+++ ... ...+..+|+|+.||-..
T Consensus 90 L~~L~L~~N~--I~~-----------------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNK--ISD-----------------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS-----S-----------------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCc--CCC-----------------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 6666666543 110 0011345678899999999998876 222 33667788888888653
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.26 E-value=6.5e-08 Score=101.22 Aligned_cols=48 Identities=29% Similarity=0.291 Sum_probs=31.6
Q ss_pred CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~ 70 (430)
+....+|..++...+|+.|....|.+.. |.....+.+|++|+|..|.+
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 3456666666666666666666665543 34455688888888888876
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.24 E-value=2.9e-06 Score=90.83 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=19.6
Q ss_pred CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~ 70 (430)
+....+|..++ .+|+.|++++|.+.. |..+ .++|+.|+|++|.+
T Consensus 209 N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L 253 (754)
T PRK15370 209 NELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRI 253 (754)
T ss_pred CCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCcc
Confidence 34445554433 355555555544332 2111 23455555555544
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.8e-07 Score=90.51 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCccEEEEcCccCCCC---CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--cCCCCCcCE
Q 014120 35 LKSIYVLDFEFCKLEPP---RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKE 109 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~---~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l~~~~~L~~ 109 (430)
+++|+.|+|+.+.+..| ..-..+++|+.|.|+.|.+++..+..+...||+|+.|.|.++.++..-. ..-+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 45666666666554432 1123466677777777777666666666677777777776664321111 111245555
Q ss_pred EEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH-----HhcCCCccceeccccc
Q 014120 110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN-----QISELPFLEYLALHYC 184 (430)
Q Consensus 110 L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~-----l~~~~p~Le~L~L~~c 184 (430)
|+++++. .+. .+..-..+.++.|..|+++.+.+++-.+++ --..+|.|+.|++...
T Consensus 251 LdLs~N~-li~------------------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 251 LDLSNNN-LID------------------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ccccCCc-ccc------------------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 5555543 110 000122345667777777777765422222 2456788888887654
Q ss_pred cc--cccccc--cccccceEecc
Q 014120 185 MK--LRSINI--SSPRLKELVFE 203 (430)
Q Consensus 185 ~~--l~~l~~--~~~~L~~L~l~ 203 (430)
+. +.++.. ..++|+.|.+.
T Consensus 312 ~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 312 NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccchhhccchhhhhhcc
Confidence 33 222222 13555555544
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.10 E-value=2.9e-08 Score=95.01 Aligned_cols=187 Identities=21% Similarity=0.207 Sum_probs=110.2
Q ss_pred EEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 16 L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
.+++...+....+|+.++....++.|+.+++.+.. |...+++++|+.|+.++|.+.. +..-++.|-.|+.++..++.
T Consensus 71 ~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred eEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccc
Confidence 34566667788888888888888888888877544 6777888888888888886522 22334555566666665543
Q ss_pred CC------------CccccC------------CCCCcCEEEcCCCcCCceEeEee---ccceeEEEeecCCCCceeccCC
Q 014120 95 GL------------KSLQLL------------GLNKLKEIKLDSNRCGLERVYIN---GVNVHSVDIKVYLEPCEVNVSS 147 (430)
Q Consensus 95 ~l------------~~l~l~------------~~~~L~~L~l~~c~~~l~~l~i~---~p~L~~L~l~~~~~~~~~~~~~ 147 (430)
.. ..+.+. ...+|++++...+ .++.+.-. ..+|+.|++....+.+-..|++
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g 226 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLPEFPG 226 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCCCCCc
Confidence 21 011110 1234555544332 22222211 2333333444422222337778
Q ss_pred CCcCceEEccCCCCChHHHHH-HhcCCCccceecccccccccccccc---ccccceEeccccccccc
Q 014120 148 CKNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVE 210 (430)
Q Consensus 148 l~~L~~L~L~~~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~ 210 (430)
|..|+.+++..|.| +.++. ...+++++..||+.+ ++++.+|.. ..+|.+|++++. .++.
T Consensus 227 cs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~ 289 (565)
T KOG0472|consen 227 CSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISS 289 (565)
T ss_pred cHHHHHHHhcccHH--HhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-cccc
Confidence 88888888888877 66665 455788888888854 345555543 355666777665 3443
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.04 E-value=7.3e-08 Score=82.24 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=93.5
Q ss_pred ecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120 20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS 98 (430)
Q Consensus 20 ~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~ 98 (430)
++.+....+|+.+-.+++|++|+++++.+.. |..+++++.||.|++..|.+.. ++.-++.+|.||.|||+++.. .+
T Consensus 40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl-~e 116 (264)
T KOG0617|consen 40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNL-NE 116 (264)
T ss_pred cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhcccccc-cc
Confidence 3446788889999999999999999988765 7788999999999999886632 355678899999999998642 21
Q ss_pred ccc----CCCCCcCEEEcCCCcCCceEeEe---eccceeEEEeec-CCCCceeccCCCCcCceEEccCCCC
Q 014120 99 LQL----LGLNKLKEIKLDSNRCGLERVYI---NGVNVHSVDIKV-YLEPCEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 99 l~l----~~~~~L~~L~l~~c~~~l~~l~i---~~p~L~~L~l~~-~~~~~~~~~~~l~~L~~L~L~~~~i 161 (430)
-.+ ..+..|+.|.++.+. ++-+.- ..++|+-|.+.. .....+-.++.+..|+.|++.+|++
T Consensus 117 ~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 111 112344444454433 211111 145666666655 2333346678888999999999998
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=1e-06 Score=81.62 Aligned_cols=128 Identities=20% Similarity=0.128 Sum_probs=88.2
Q ss_pred CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEe
Q 014120 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDI 134 (430)
Q Consensus 56 ~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l 134 (430)
.+..|++++|++|.++. +.....-.|.++.|+++++.....-++..+++|++|+++++. ..+.......-++++|.+
T Consensus 282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 46789999999998743 233445569999999999876655566667999999999864 111111223567788888
Q ss_pred ecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120 135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (430)
Q Consensus 135 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~ 185 (430)
+++.+..-.++.++-+|..|++++|+|.+-.-...++++|.||.+.+.+.+
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 774333234456667888899999998432223467889999988886544
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=2.2e-06 Score=80.97 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=40.4
Q ss_pred cCCCCcCceEEccCCCCChH---HHHHHhcCCCccceecccccccc--cccc-----ccccccceEeccccccccc----
Q 014120 145 VSSCKNLTHLRLDGLSITDK---WLYNQISELPFLEYLALHYCMKL--RSIN-----ISSPRLKELVFERCEELVE---- 210 (430)
Q Consensus 145 ~~~l~~L~~L~L~~~~i~~~---~l~~l~~~~p~Le~L~L~~c~~l--~~l~-----~~~~~L~~L~l~~c~~L~~---- 210 (430)
+..++.|+.+.+..|.|... .+..-+..||+|+.|+|.++.-- .+.. .+.++|+.|++++| .++.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~ 259 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAI 259 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHH
Confidence 44556666666666665432 22334556677777776543210 0110 11345666677666 3331
Q ss_pred -----ccccCCCcceEEecce
Q 014120 211 -----FELDTPNLSIFKCFNY 226 (430)
Q Consensus 211 -----~~i~~p~L~~~~~~~~ 226 (430)
+.-.+|+|+.+.+.|+
T Consensus 260 a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHHHhccCCCCceeccCcc
Confidence 1122566666665444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.93 E-value=9.5e-06 Score=71.26 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=38.1
Q ss_pred EEEEEecCCccccCCcccc-CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 15 ELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 15 ~L~L~~~~~~~~~LP~~l~-~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
.-.|++.++.+..+. .+. .+.+|+.|+|++|.+..-..+..+++|++|++++|.++.-. ..+...+|+|++|+++++
T Consensus 21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence 334455555566664 454 47899999999998776567888999999999999985431 223356899999999987
Q ss_pred CC--CCcc-ccCCCCCcCEEEcCCCc
Q 014120 94 PG--LKSL-QLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 94 ~~--l~~l-~l~~~~~L~~L~l~~c~ 116 (430)
.- +..+ .+..+++|+.|++.+++
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCChHHhHHHHcCCCcceeeccCCc
Confidence 52 3332 34567888888888765
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.81 E-value=1.1e-07 Score=91.14 Aligned_cols=154 Identities=21% Similarity=0.246 Sum_probs=74.1
Q ss_pred CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcccc
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL 101 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l 101 (430)
+.+..+|+.++++.++..|++.++.+.. |+...++..|+.|+..+|.+ +.++.-++++..|+.|++..++...-..+
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef 224 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEF 224 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCC
Confidence 4566666666666666666666654332 33334466666666665543 22344455555666666665543222234
Q ss_pred CCCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120 102 LGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176 (430)
Q Consensus 102 ~~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L 176 (430)
.||..|+++.+..+. ++.+ .-+.+++..|++...... .+.++--+++|.+|++++|.| ..++..++++ +|
T Consensus 225 ~gcs~L~Elh~g~N~--i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ--IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL-HL 299 (565)
T ss_pred CccHHHHHHHhcccH--HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc--ccCCcccccc-ee
Confidence 455555555555432 1111 112344444444441111 123334445555555555555 3344444444 44
Q ss_pred ceecccc
Q 014120 177 EYLALHY 183 (430)
Q Consensus 177 e~L~L~~ 183 (430)
+.|.+.+
T Consensus 300 ~~L~leG 306 (565)
T KOG0472|consen 300 KFLALEG 306 (565)
T ss_pred eehhhcC
Confidence 4444443
No 31
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=3.8e-06 Score=85.97 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCcccc----CCCCCcCEEEcCCCc
Q 014120 56 TLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQL----LGLNKLKEIKLDSNR 116 (430)
Q Consensus 56 ~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~ 116 (430)
.+++|+.|+++++. +++.++..+...||+|+.|.+.+|..++...+ .+|+.|++|+++.|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 45555555555555555555555544333221 234555555555554
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.65 E-value=1.9e-05 Score=56.67 Aligned_cols=56 Identities=27% Similarity=0.330 Sum_probs=24.3
Q ss_pred CccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 37 SIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 37 ~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
+|++|++++|.+.. +..|.++++|++|++++|.++.-. +..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 34555555543322 234445555555555555442110 123444444555544443
No 33
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=97.62 E-value=5.5e-06 Score=57.08 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCCccccccccceeeeeeeeccccccceeeeeecCchhhHHH
Q 014120 365 LPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKI 406 (430)
Q Consensus 365 ~~~~c~~~~Lk~v~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (430)
.+++|+.++||.|+++++.+... ++++++|+++|+++||++
T Consensus 7 ~~p~Cl~s~Lk~v~~~~f~g~~~-e~~f~~yil~na~~Lk~m 47 (51)
T PF08387_consen 7 SVPECLLSHLKFVEIKGFRGEEN-ELEFAKYILENAPVLKKM 47 (51)
T ss_pred CCccchhheeEEEEEEeeeCcHH-HHHHHHHHHhhhhhhcEE
Confidence 57999999999999999988888 699999999999999985
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2.9e-05 Score=82.46 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=90.6
Q ss_pred CCCccEEEEcCccCCC---C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCE
Q 014120 35 LKSIYVLDFEFCKLEP---P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKE 109 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~---~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~ 109 (430)
-++|++|+++|..... | ....-||+|++|.+++..+....+..+..++|+|+.||++++. ++.+ .++.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHH
Confidence 3578888888854222 2 2234589999999998888666678888899999999999853 3322 2333445555
Q ss_pred EEcCCCcCCceE---e--EeeccceeEEEeec-CCC--C----ce-eccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120 110 IKLDSNRCGLER---V--YINGVNVHSVDIKV-YLE--P----CE-VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176 (430)
Q Consensus 110 L~l~~c~~~l~~---l--~i~~p~L~~L~l~~-~~~--~----~~-~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L 176 (430)
|.+.+-. +.. + -+...+|+.|+++. ... + .- .....+|+|+.|+.+++.++++.++.++..-|+|
T Consensus 200 L~mrnLe--~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLE--FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCC--CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 4444321 111 0 11346677777766 111 1 00 1123478888888888888777777777777777
Q ss_pred ceecccc
Q 014120 177 EYLALHY 183 (430)
Q Consensus 177 e~L~L~~ 183 (430)
+.+..-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 7776543
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.52 E-value=2.9e-05 Score=74.72 Aligned_cols=190 Identities=19% Similarity=0.190 Sum_probs=101.9
Q ss_pred EecCCccccCCccccC-CCCccEEEEcCccCC--CCCCCCCCCCCCEEEEee-ecCChHHHHHHh---------------
Q 014120 19 DVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSF-VHVDDEVIRDMV--------------- 79 (430)
Q Consensus 19 ~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~--~~~~~~~l~~L~~L~Ls~-~~~~~~~l~~l~--------------- 79 (430)
.+..+.+..+|+..|+ .++|++|+|+++.+. .|..|.++++|.+|.+.+ |.|++-. ...+
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHhhhHHHHHHHhcChhh
Confidence 3333678888887666 889999999987643 467888888888888777 6665421 1222
Q ss_pred ---------cCCCCccEEEeeeCCC--CCccccCCCCCcCEEEcCCCc----CCceEe-------Ee--e---c------
Q 014120 80 ---------AGCPLIEYININNCPG--LKSLQLLGLNKLKEIKLDSNR----CGLERV-------YI--N---G------ 126 (430)
Q Consensus 80 ---------~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~----~~l~~l-------~i--~---~------ 126 (430)
..+++|..|.+..+.. +..-.+.+...++++.+..+. ..+++. .+ + +
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 2334444444433211 111112223344444332221 011111 00 0 0
Q ss_pred --------------cceeEE--EeecCCCC----ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccc
Q 014120 127 --------------VNVHSV--DIKVYLEP----CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK 186 (430)
Q Consensus 127 --------------p~L~~L--~l~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~ 186 (430)
..++.+ .+.+...+ ....|.++++|++|+|++|.+++ .-+..+.+...+++|.+...+
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~- 309 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNK- 309 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcch-
Confidence 011111 11111111 12347889999999999999943 223366778888999886533
Q ss_pred ccccc----ccccccceEeccccccccccc
Q 014120 187 LRSIN----ISSPRLKELVFERCEELVEFE 212 (430)
Q Consensus 187 l~~l~----~~~~~L~~L~l~~c~~L~~~~ 212 (430)
++.+. ....+|+.|++.+. +++.+.
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred HHHHHHHhhhccccceeeeecCC-eeEEEe
Confidence 22221 12467888888887 666443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.50 E-value=0.00016 Score=51.77 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=44.5
Q ss_pred ceEEEEEecCCccccCCccccC-CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecC
Q 014120 13 VKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 13 v~~L~L~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~ 70 (430)
++.++ +..+....+|+..|. +++|++|+++++.+.. +..|.++++|++|++++|.+
T Consensus 3 L~~L~--l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLD--LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEE--ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEE--CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 44455 445678889976554 9999999999987654 57889999999999999864
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.44 E-value=1.7e-05 Score=76.28 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=47.2
Q ss_pred CCccEEEEcCccC--CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc
Q 014120 36 KSIYVLDFEFCKL--EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL 99 (430)
Q Consensus 36 ~~L~~L~Ls~~~~--~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l 99 (430)
.+-+.++|..+.+ .++..|+.+++||+|+|++|.|+..+ +..+.+++.|-.|-+.++..++++
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhh
Confidence 3456777777654 44688999999999999999986543 556778888888888776665554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.38 E-value=8.6e-05 Score=70.43 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=130.6
Q ss_pred hhHHHHHHhCCceEEEEEecC----Cccc-------cCCccccCCCCccEEEEcCccCCC--C----CCCCCCCCCCEEE
Q 014120 2 NRCLSYAFASNVKELKLDVGC----CRIY-------NLPQIVFYLKSIYVLDFEFCKLEP--P----RSTVTLFSLRKLC 64 (430)
Q Consensus 2 ~~wi~~a~~~~v~~L~L~~~~----~~~~-------~LP~~l~~~~~L~~L~Ls~~~~~~--~----~~~~~l~~L~~L~ 64 (430)
.+||..+.++.-+.-..++++ .... .|.+.+..++.|++|+||.+.+.+ + ..+.++.+|+.|.
T Consensus 47 a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~ 126 (382)
T KOG1909|consen 47 ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY 126 (382)
T ss_pred HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh
Confidence 368888877655444455543 1222 333445567899999999987655 2 2345789999999
Q ss_pred EeeecCChHH------------HHHHhcCCCCccEEEeeeCCC----CCc--cccCCCCCcCEEEcCCCcCCceEe----
Q 014120 65 LSFVHVDDEV------------IRDMVAGCPLIEYININNCPG----LKS--LQLLGLNKLKEIKLDSNRCGLERV---- 122 (430)
Q Consensus 65 Ls~~~~~~~~------------l~~l~~~~p~Le~L~L~~c~~----l~~--l~l~~~~~L~~L~l~~c~~~l~~l---- 122 (430)
|.+|.+...+ ....+..-|.|+.+....+.. -+. ..+..++.|+.+.+..+.-..+.+
T Consensus 127 L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ 206 (382)
T KOG1909|consen 127 LNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA 206 (382)
T ss_pred hhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence 9999874322 112344667899998887653 111 123345788888887764111112
Q ss_pred --EeeccceeEEEeecCCCC------ceeccCCCCcCceEEccCCCCChH----HHHHHhcCCCccceecccccccccc-
Q 014120 123 --YINGVNVHSVDIKVYLEP------CEVNVSSCKNLTHLRLDGLSITDK----WLYNQISELPFLEYLALHYCMKLRS- 189 (430)
Q Consensus 123 --~i~~p~L~~L~l~~~~~~------~~~~~~~l~~L~~L~L~~~~i~~~----~l~~l~~~~p~Le~L~L~~c~~l~~- 189 (430)
--.+|+|+.|++..+... ....++.+++|+.|++++|.+.+. .+..+-...|.|+.|.+.+|..-..
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 113799999998773222 122356788999999999988662 2334556689999999987753211
Q ss_pred ---ccc---cccccceEecccc
Q 014120 190 ---INI---SSPRLKELVFERC 205 (430)
Q Consensus 190 ---l~~---~~~~L~~L~l~~c 205 (430)
+.. .-+.|..|++++|
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcc
Confidence 111 2578999999998
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.26 E-value=1.9e-05 Score=81.30 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=94.0
Q ss_pred CccccCCCCccEEEEcCccCCCCCCCC---------------------------------CCCCCCEEEEeeecCChHHH
Q 014120 29 PQIVFYLKSIYVLDFEFCKLEPPRSTV---------------------------------TLFSLRKLCLSFVHVDDEVI 75 (430)
Q Consensus 29 P~~l~~~~~L~~L~Ls~~~~~~~~~~~---------------------------------~l~~L~~L~Ls~~~~~~~~l 75 (430)
|-.+|..++|++|.|.+|.+....++. .+-.|.+.+.++|.+. .+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hH
Confidence 777888899999999987654311110 1224555555555441 11
Q ss_pred HHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceE
Q 014120 76 RDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHL 154 (430)
Q Consensus 76 ~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L 154 (430)
...+.-+|.||.|+|++|..-+.-.+..|++|++||++.+. ..+..+....-.|+.|.+.++-...-.++.++++|+.|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence 12233457889999998765444466678999999998754 33444443334588888877333223456778888888
Q ss_pred EccCCCCChHHHHHHhcCCCccceeccccc
Q 014120 155 RLDGLSITDKWLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 155 ~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c 184 (430)
++++|-+.+-.--..+..+..|..|.+.++
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 888887755222222334556677777654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.26 E-value=5.4e-05 Score=82.56 Aligned_cols=86 Identities=24% Similarity=0.305 Sum_probs=46.3
Q ss_pred cccCCccccC-CCCccEEEEcCccC--CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-c
Q 014120 25 IYNLPQIVFY-LKSIYVLDFEFCKL--EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-Q 100 (430)
Q Consensus 25 ~~~LP~~l~~-~~~L~~L~Ls~~~~--~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~ 100 (430)
...++..+|. ++.|++|+|++|.- ..|..++++-+||+|+|+++.+. .++.-+.++..|.+|++.....+... .
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccc
Confidence 3445544444 66677777776532 22555666667777777766554 23445555556666666655443332 1
Q ss_pred c-CCCCCcCEEEc
Q 014120 101 L-LGLNKLKEIKL 112 (430)
Q Consensus 101 l-~~~~~L~~L~l 112 (430)
+ ..+.+|++|.+
T Consensus 637 i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 637 ILLELQSLRVLRL 649 (889)
T ss_pred hhhhcccccEEEe
Confidence 1 12355555554
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.11 E-value=0.00026 Score=70.93 Aligned_cols=168 Identities=21% Similarity=0.235 Sum_probs=80.5
Q ss_pred cccCCCCccEEEEcCccCCC-CCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccC-CCCCc
Q 014120 31 IVFYLKSIYVLDFEFCKLEP-PRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL-GLNKL 107 (430)
Q Consensus 31 ~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~-~~~~L 107 (430)
.+...+.++.|.+.++.+.. +.....+. +|+.|++++|.+... +.-+..+|+|+.|++++|..-...... ..+.|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 33344556666666654333 22223332 666666666654321 223455666666666665432111111 34556
Q ss_pred CEEEcCCCcCCceEeEe--ecc-ceeEEEeecC-CCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccc
Q 014120 108 KEIKLDSNRCGLERVYI--NGV-NVHSVDIKVY-LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHY 183 (430)
Q Consensus 108 ~~L~l~~c~~~l~~l~i--~~p-~L~~L~l~~~-~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~ 183 (430)
+.|+++++. +..+.. ..+ .|+++.+++. .......+..+.++..+.+.++.+ ..+...+..++.++.|++++
T Consensus 189 ~~L~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~--~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 189 NNLDLSGNK--ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hheeccCCc--cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee--eeccchhccccccceecccc
Confidence 666665542 333322 122 2555555552 122223445556666666666665 23345556666677777754
Q ss_pred ccccccccc--cccccceEecccc
Q 014120 184 CMKLRSINI--SSPRLKELVFERC 205 (430)
Q Consensus 184 c~~l~~l~~--~~~~L~~L~l~~c 205 (430)
+. +..++. ...+++.|++++.
T Consensus 265 n~-i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 265 NQ-ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred cc-ccccccccccCccCEEeccCc
Confidence 33 222221 1345666666554
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.06 E-value=0.00043 Score=69.33 Aligned_cols=180 Identities=20% Similarity=0.176 Sum_probs=104.7
Q ss_pred EEEEcCccC-CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCC-CCccEEEeeeCCCCCcc--ccCCCCCcCEEEcCCC
Q 014120 40 VLDFEFCKL-EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC-PLIEYININNCPGLKSL--QLLGLNKLKEIKLDSN 115 (430)
Q Consensus 40 ~L~Ls~~~~-~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~-p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c 115 (430)
.++++++.. ........++.++.|++.++.+++ ++...... ++|+.|+++++. ++.+ .+..++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 466666654 323344556788888888887754 23344444 378888888854 3333 5666788888888876
Q ss_pred cCCceEeEe---eccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccc--c
Q 014120 116 RCGLERVYI---NGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLR--S 189 (430)
Q Consensus 116 ~~~l~~l~i---~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~--~ 189 (430)
. +.++.. ..++|+.|.+++..+. .+........|+++.+++|.+ ......+.++..+..+.+.+.+... .
T Consensus 174 ~--l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 174 D--LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred h--hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccc
Confidence 4 333322 5678888888873332 112223445588888888853 2333445566666666654333222 1
Q ss_pred ccccccccceEeccccccccccc--ccCCCcceEEeccee
Q 014120 190 INISSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYV 227 (430)
Q Consensus 190 l~~~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~ 227 (430)
.....++++.|+++++ .++++. ....+++.+.+.|..
T Consensus 250 ~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 250 SIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred hhccccccceeccccc-cccccccccccCccCEEeccCcc
Confidence 1222455788887776 555554 233555566555543
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00023 Score=66.28 Aligned_cols=179 Identities=17% Similarity=0.095 Sum_probs=105.4
Q ss_pred CCceEEEEEecC-CccccCCccccCCCCccEEEEcCccCCCC-CCC-CCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGC-CRIYNLPQIVFYLKSIYVLDFEFCKLEPP-RST-VTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~-~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~-~~~-~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..|++++|..+. .....+-..+-+++.|+.|+|+.+.+..+ ... ..+.+|++|.|.+..+++......+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 467777664432 12223333344577889999988877653 111 345688899998888888877888888899999
Q ss_pred EEeeeCCC----CCccccCC-CCCcCEEEcCCCcCCce-----EeEeeccceeEEEeecC---CCCceeccCCCCcCceE
Q 014120 88 ININNCPG----LKSLQLLG-LNKLKEIKLDSNRCGLE-----RVYINGVNVHSVDIKVY---LEPCEVNVSSCKNLTHL 154 (430)
Q Consensus 88 L~L~~c~~----l~~l~l~~-~~~L~~L~l~~c~~~l~-----~l~i~~p~L~~L~l~~~---~~~~~~~~~~l~~L~~L 154 (430)
|+++.++. +..-.... .+.++++....|. ... .+.--.|++..+-+... .......+..+|.+-.|
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~-~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL-EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcH-HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 88887632 11111111 1456666666664 111 11112566665555431 11112334556677788
Q ss_pred EccCCCCChHHHHHHhcCCCccceeccccccccccc
Q 014120 155 RLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI 190 (430)
Q Consensus 155 ~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l 190 (430)
+|+.++|.+-.--..+.++|.|..|.++..+-...+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 888888843222234667888888888776654443
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=0.00017 Score=73.81 Aligned_cols=128 Identities=24% Similarity=0.372 Sum_probs=57.7
Q ss_pred CCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeCCCCCccc----cCCCCCcCEEEcCCCcCCce-------EeEee
Q 014120 59 SLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLE-------RVYIN 125 (430)
Q Consensus 59 ~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~-------~l~i~ 125 (430)
.++.+.+..+. ........+...+|+|+.|.+..|..+.... ...++.|+.|+++.|..... .+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (482)
T KOG1947|consen 162 NLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI 241 (482)
T ss_pred HHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh
Confidence 44444444332 2334444445556666666666665544311 22356666666654210000 00111
Q ss_pred ccceeEEEeecCC-CCceec----cCCCCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccc
Q 014120 126 GVNVHSVDIKVYL-EPCEVN----VSSCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKL 187 (430)
Q Consensus 126 ~p~L~~L~l~~~~-~~~~~~----~~~l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l 187 (430)
+++|+.+++++.. +. ... ...|++|+.|.+.++. +++..+..+...||.|++|+++.|..+
T Consensus 242 ~~~L~~l~l~~~~~is-d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVT-DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccC-chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2333333332210 11 011 1225566666655554 555566666666666666666655543
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.90 E-value=0.0021 Score=63.71 Aligned_cols=68 Identities=15% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCCccEEEEcCccCCC-CCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEc
Q 014120 35 LKSIYVLDFEFCKLEP-PRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL 112 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~-~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l 112 (430)
+.+++.|++++|.+.. | .+| +|++|.+++|.-- ..++..+ .++|++|++++|..+..+. +.|++|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCcccccccc----cccceEEe
Confidence 5666666666664433 2 233 4666666655320 0011111 1356666666665444321 34555555
Q ss_pred C
Q 014120 113 D 113 (430)
Q Consensus 113 ~ 113 (430)
.
T Consensus 120 ~ 120 (426)
T PRK15386 120 K 120 (426)
T ss_pred C
Confidence 4
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.89 E-value=0.0011 Score=70.30 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=50.1
Q ss_pred CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeec
Q 014120 59 SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKV 136 (430)
Q Consensus 59 ~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~ 136 (430)
.++.|+|++|.+++. ++..+..+++|+.|+|++|..-..+ .+..+++|+.|++++|. ++|
T Consensus 419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-----------------lsg 480 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-----------------FNG 480 (623)
T ss_pred EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-----------------CCC
Confidence 367788887776433 3455677788888888776432122 23445666666666553 001
Q ss_pred CCCCceeccCCCCcCceEEccCCCCCh
Q 014120 137 YLEPCEVNVSSCKNLTHLRLDGLSITD 163 (430)
Q Consensus 137 ~~~~~~~~~~~l~~L~~L~L~~~~i~~ 163 (430)
.. +..++++++|+.|+|++|.++.
T Consensus 481 -~i--P~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 481 -SI--PESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred -CC--chHHhcCCCCCEEECcCCcccc
Confidence 12 2456667777888887777653
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.81 E-value=0.00032 Score=65.45 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=79.6
Q ss_pred CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCccccCCCCCcCEEEc
Q 014120 36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSLQLLGLNKLKEIKL 112 (430)
Q Consensus 36 ~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l 112 (430)
+.|+.++||++.+.. .....-.|.+|.|++++|.+..- .+ +..+++|..|||+++.. +...+.. +.++++|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K-LGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGNLLAECVGWHLK-LGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hh-hhhcccceEeecccchhHhhhhhHhh-hcCEeeeeh
Confidence 668889999976554 24455678999999999987432 22 55678999999998642 2222222 467777777
Q ss_pred CCCcCCceEeE-e-eccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCC
Q 014120 113 DSNRCGLERVY-I-NGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 113 ~~c~~~l~~l~-i-~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
..+. ++++. + ..-+|+.|++.++.+. .-..++++|+|+.+.|.+|.+.
T Consensus 360 a~N~--iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNK--IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhh--HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7653 22221 0 1235677777774333 1235789999999999999874
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.75 E-value=0.0012 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=14.0
Q ss_pred CccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120 37 SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 37 ~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~ 70 (430)
+|++|+++++.+.. |..+.+|++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 34444444444333 22244444444444444443
No 49
>PLN03150 hypothetical protein; Provisional
Probab=96.69 E-value=0.0017 Score=69.02 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=53.4
Q ss_pred ccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc--cccCCCCCcCEEEcC
Q 014120 38 IYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS--LQLLGLNKLKEIKLD 113 (430)
Q Consensus 38 L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--l~l~~~~~L~~L~l~ 113 (430)
++.|+|+++.+.. |..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|..-.. ..+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6777887776543 45667788888888888877543 455577788888888887753221 234566788888887
Q ss_pred CCc
Q 014120 114 SNR 116 (430)
Q Consensus 114 ~c~ 116 (430)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 764
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00095 Score=62.31 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=45.1
Q ss_pred ccCCCCccEEEEcCccCCCCCC----CCCCCCCCEEEEeeecC-ChHHHHHHhcCCCCccEEEeeeCC
Q 014120 32 VFYLKSIYVLDFEFCKLEPPRS----TVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 32 l~~~~~L~~L~Ls~~~~~~~~~----~~~l~~L~~L~Ls~~~~-~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
+++..-+..|.+.+|.+..... -...+.++.|+|.+|.+ .++.+..++.++|.|+.|+|+.+.
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 3344444556666666554211 23578899999999998 678888889999999999998764
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.63 E-value=0.00041 Score=75.83 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=75.4
Q ss_pred CccccCCccccCCCCccEEEEcCcc--CC-CC-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCK--LE-PP-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS 98 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~--~~-~~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~ 98 (430)
+....++... .+++|++|-+.++. +. .+ ..|..+|.|++|||++|.- ...++..++.+-+|++|++++. .++.
T Consensus 533 ~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t-~I~~ 609 (889)
T KOG4658|consen 533 NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT-GISH 609 (889)
T ss_pred cchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC-Cccc
Confidence 3456666443 45689999998874 22 22 4578899999999998743 2336777888889999999985 3443
Q ss_pred c--ccCCCCCcCEEEcCCCcCCceEe---EeeccceeEEEeec
Q 014120 99 L--QLLGLNKLKEIKLDSNRCGLERV---YINGVNVHSVDIKV 136 (430)
Q Consensus 99 l--~l~~~~~L~~L~l~~c~~~l~~l---~i~~p~L~~L~l~~ 136 (430)
+ .+..+.+|.+|++.... .+..+ ....++|++|.+..
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTG-RLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cchHHHHHHhhheecccccc-ccccccchhhhcccccEEEeec
Confidence 3 23456788888887665 33333 22368888888766
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.60 E-value=0.0019 Score=68.96 Aligned_cols=58 Identities=24% Similarity=0.163 Sum_probs=32.6
Q ss_pred ccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh-HHHHHHhcCCCccceeccccc
Q 014120 126 GVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-KWLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 126 ~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~l~~l~~~~p~Le~L~L~~c 184 (430)
.|+|..|+++|..+..-.++++++||+.|.+.+..+.. ..+..++ ++.+|+.||++.-
T Consensus 172 FpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRD 230 (699)
T ss_pred cCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccc
Confidence 45555555555333222445666777777777666644 3344443 4677777777643
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.27 E-value=0.0035 Score=41.58 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=27.7
Q ss_pred CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 58 ~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
++|++|++++|.+++ ++..+++|++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 579999999999875 45568899999999999974
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.17 E-value=0.00022 Score=71.83 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=40.0
Q ss_pred ccccCCccccCCCCccEEEEcCccCC-CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--c
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLE-PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--Q 100 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~-~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~ 100 (430)
+...+|..+..+..|..+.|..+.+. .|....++..|..|+|+.|+++- ++.-+..|| |+.|-+++++. +.+ .
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl-~~lp~~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKL-TSLPEE 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCcc-ccCCcc
Confidence 33444444333444444444442221 13344556666666666665421 122233344 55555555432 211 2
Q ss_pred cCCCCCcCEEEcCCCc
Q 014120 101 LLGLNKLKEIKLDSNR 116 (430)
Q Consensus 101 l~~~~~L~~L~l~~c~ 116 (430)
+...++|.+|+.+.|.
T Consensus 162 ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNE 177 (722)
T ss_pred cccchhHHHhhhhhhh
Confidence 2234566666666554
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.0016 Score=59.73 Aligned_cols=106 Identities=22% Similarity=0.140 Sum_probs=71.5
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecC-ChHHHHHHhcCCCCccEEE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~-~~~~l~~l~~~~p~Le~L~ 89 (430)
..++++.+|..-...-.++...-....|+.|.+.++.+..-..+-.+|+||+|.++.|.. ....+..++..||+|++|+
T Consensus 18 ~~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 18 EQVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 345666666432223335544445678888888888777666788899999999999943 2233566677889999999
Q ss_pred eeeCCC--CCcc-ccCCCCCcCEEEcCCCc
Q 014120 90 INNCPG--LKSL-QLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 90 L~~c~~--l~~l-~l~~~~~L~~L~l~~c~ 116 (430)
++++.. +..+ .+..+.+|..|++.+|.
T Consensus 98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 98 LSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred ecCCccccccccchhhhhcchhhhhcccCC
Confidence 999753 2222 22334667777777776
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.87 E-value=0.018 Score=51.12 Aligned_cols=90 Identities=21% Similarity=0.147 Sum_probs=61.5
Q ss_pred cccCCccccC----CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCc
Q 014120 25 IYNLPQIVFY----LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKS 98 (430)
Q Consensus 25 ~~~LP~~l~~----~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~ 98 (430)
.+.+|.. ++ ..+...++|+.+.+.....+..+++|.+|.|.+|.++.-+ +.+-...|+|..|.|.+++. +.+
T Consensus 28 ~lkip~i-enlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 28 GLKIPVI-ENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred cccccch-hhccccccccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhh
Confidence 4666632 33 3456778888887665557888999999999999985432 33445678899999998753 222
Q ss_pred c-ccCCCCCcCEEEcCCCc
Q 014120 99 L-QLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 99 l-~l~~~~~L~~L~l~~c~ 116 (430)
+ .+..||+|+.|.+-++.
T Consensus 106 l~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cchhccCCccceeeecCCc
Confidence 2 34567777777776654
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0026 Score=58.41 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCC
Q 014120 81 GCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSN 115 (430)
Q Consensus 81 ~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c 115 (430)
....|+.|++.++...+..++..+++|++|.++.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 33455555555554433334445577777777765
No 58
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=95.70 E-value=0.001 Score=49.34 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=33.6
Q ss_pred ccccccccceeeeeeeeccccccceeeeeecCchhhHHH
Q 014120 368 SCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKI 406 (430)
Q Consensus 368 ~c~~~~Lk~v~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (430)
+|+.++||.|+|.++.+ ...++++++|+++|+++||++
T Consensus 1 ~cl~~~Lk~v~i~~f~g-~~~e~~~~~~il~~a~~Lk~~ 38 (72)
T smart00579 1 ECLLSSLEVLEIKGYRG-TEEEKELVKYFLENAPCLKKL 38 (72)
T ss_pred CcchheEEEEEEEeccC-cHHHHHHHHHHHhcchhheEE
Confidence 48899999999999855 555799999999999999987
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.52 E-value=0.0015 Score=65.94 Aligned_cols=82 Identities=27% Similarity=0.257 Sum_probs=45.3
Q ss_pred ccCCCCccEEEEcCccCCCCCC-CCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEE
Q 014120 32 VFYLKSIYVLDFEFCKLEPPRS-TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEI 110 (430)
Q Consensus 32 l~~~~~L~~L~Ls~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L 110 (430)
+..+++|..|++.++.+..... ...+++|+.|+|++|.++.- .-+..++.|+.|++++|..-..-.+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc---cchhhccchhhheeccCcchhccCCccchhhhcc
Confidence 4455667777777766555334 56677777777777766331 1133445577777766543222222234566666
Q ss_pred EcCCCc
Q 014120 111 KLDSNR 116 (430)
Q Consensus 111 ~l~~c~ 116 (430)
++..+.
T Consensus 168 ~l~~n~ 173 (414)
T KOG0531|consen 168 DLSYNR 173 (414)
T ss_pred cCCcch
Confidence 665543
No 60
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.73 E-value=0.0093 Score=60.46 Aligned_cols=157 Identities=17% Similarity=0.234 Sum_probs=86.1
Q ss_pred CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-c
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-Q 100 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~ 100 (430)
+..-.+|..+.++..|+.|+|+.+.+.. |..+..|| |+.|-+++|.++.. +.-+...+.|..|+.+.|....-. .
T Consensus 108 n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsq 184 (722)
T KOG0532|consen 108 NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQ 184 (722)
T ss_pred ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHH
Confidence 4456677777778888888888776544 33444444 77888887776321 223445566777777776432111 1
Q ss_pred cCCCCCcCEEEcCCCcCCceEe--EeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhc-CCCcc
Q 014120 101 LLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQIS-ELPFL 176 (430)
Q Consensus 101 l~~~~~L~~L~l~~c~~~l~~l--~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~-~~p~L 176 (430)
+.++.+|+.|.+..+. +..+ +...-.|..|+++.+.+. .++.|.+++.|++|.|.+|.+..-..+-... ...-.
T Consensus 185 l~~l~slr~l~vrRn~--l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNH--LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred hhhHHHHHHHHHhhhh--hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence 2233444444444432 1111 011224555666552222 3578888889999999988875422222222 23334
Q ss_pred ceeccccc
Q 014120 177 EYLALHYC 184 (430)
Q Consensus 177 e~L~L~~c 184 (430)
+.|++..|
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 66666655
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.73 E-value=0.1 Score=51.92 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=85.1
Q ss_pred CCCCCCCEEEEeeecCChHHHHHHhcCCC-CccEEEeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEE
Q 014120 55 VTLFSLRKLCLSFVHVDDEVIRDMVAGCP-LIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVD 133 (430)
Q Consensus 55 ~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p-~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~ 133 (430)
..+.+++.|++++|.++. ++ .+| +|++|.+++|..++.+.-.-.++|++|.++.|. .+..+ .++|+.|.
T Consensus 49 ~~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEE
Confidence 357889999999986533 22 233 699999999988776542223689999999886 45433 34677777
Q ss_pred eecCCCCceeccCCC-CcCceEEccCCCC-ChHHHHHHhcCC-CccceeccccccccccccccccccceEecccc
Q 014120 134 IKVYLEPCEVNVSSC-KNLTHLRLDGLSI-TDKWLYNQISEL-PFLEYLALHYCMKLRSINISSPRLKELVFERC 205 (430)
Q Consensus 134 l~~~~~~~~~~~~~l-~~L~~L~L~~~~i-~~~~l~~l~~~~-p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c 205 (430)
+.+... ..+..+ ++|+.|.+.+++. ....++. .+ ++|+.|++++|..+......+.+|+.|.++.+
T Consensus 119 L~~n~~---~~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSAT---DSIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred eCCCCC---cccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 765221 123334 4677887754331 1011111 12 57999999998866422234578999998765
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.0023 Score=59.26 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEcCC
Q 014120 57 LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDS 114 (430)
Q Consensus 57 l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l~~ 114 (430)
+.+.++|+.++|.++|.. +...+|.||.|.|+-+.. +.+ .+..|.+|+.|.+..
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHh
Confidence 455667777777666543 445667777777765432 111 233455555555544
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.38 E-value=0.068 Score=47.51 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=53.7
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCCh-HHHHHHhcCCCCccEEEeeeCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDD-EVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~-~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
+|++++....++ .+-.++.|..|.|+++.+.. |.-..-+|+|+.|.|.+|++.. +.+.. +..||.|++|.+-++.
T Consensus 47 iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 47 IDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred ecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 566666555555 44467899999999976543 3333568999999999998732 22333 4579999999998865
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.10 E-value=0.015 Score=58.61 Aligned_cols=100 Identities=22% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCCCccEEEeeeCCCCCccc-cCCCCCcCEEEcCCCcCCceEeE-e-eccceeEEEeecCCCCceeccCCCCcCceEEcc
Q 014120 81 GCPLIEYININNCPGLKSLQ-LLGLNKLKEIKLDSNRCGLERVY-I-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLD 157 (430)
Q Consensus 81 ~~p~Le~L~L~~c~~l~~l~-l~~~~~L~~L~l~~c~~~l~~l~-i-~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~ 157 (430)
.+.+|+.|++.++..-+... +..+++|++|+++.+. +..+. + .++.|+.|++.++.+.....+..+++|+.++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--ITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc--cccccchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 34455555555443222222 3334555555555432 22111 1 123355556555333323345557788888888
Q ss_pred CCCCChHHHHHH-hcCCCccceeccccc
Q 014120 158 GLSITDKWLYNQ-ISELPFLEYLALHYC 184 (430)
Q Consensus 158 ~~~i~~~~l~~l-~~~~p~Le~L~L~~c 184 (430)
+|.++ .++.. ...++.++.+.+.+.
T Consensus 171 ~n~i~--~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 171 YNRIV--DIENDELSELISLEELDLGGN 196 (414)
T ss_pred cchhh--hhhhhhhhhccchHHHhccCC
Confidence 88873 33332 456777777777643
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.03 E-value=0.061 Score=49.96 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=35.3
Q ss_pred CcCceEEccCCCCChHHHHHH----hcCCCccceeccccccc--ccc--c---cccccccceEecccc
Q 014120 149 KNLTHLRLDGLSITDKWLYNQ----ISELPFLEYLALHYCMK--LRS--I---NISSPRLKELVFERC 205 (430)
Q Consensus 149 ~~L~~L~L~~~~i~~~~l~~l----~~~~p~Le~L~L~~c~~--l~~--l---~~~~~~L~~L~l~~c 205 (430)
.+|+.+.+..|.|....+..+ +..+.+|+.|++....- ..+ + -..-+.|+.|.+.+|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 578888888888866544432 34577888888875431 111 1 112345788888888
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.0078 Score=55.88 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=52.5
Q ss_pred CcCEEEcCCCcCCceEeEe--eccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccc
Q 014120 106 KLKEIKLDSNRCGLERVYI--NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHY 183 (430)
Q Consensus 106 ~L~~L~l~~c~~~l~~l~i--~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~ 183 (430)
+.++|+..+| ++.++.+ .+|.|+.|.|+-+.+..-..+..|++|+.|+|..|.|.+-.--.-+.++|+|+.|-|..
T Consensus 20 ~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCC--CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3444445444 4555543 36778888777644443456788999999999999995522233567999999999974
Q ss_pred c
Q 014120 184 C 184 (430)
Q Consensus 184 c 184 (430)
+
T Consensus 98 N 98 (388)
T KOG2123|consen 98 N 98 (388)
T ss_pred C
Confidence 3
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.41 E-value=0.074 Score=49.41 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=20.8
Q ss_pred CCCCcCceEEccCCCCCh---HHHHHHhcCCCccceeccccc
Q 014120 146 SSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 146 ~~l~~L~~L~L~~~~i~~---~~l~~l~~~~p~Le~L~L~~c 184 (430)
..+.+|+.|+|..|.++- ..+......++.|+.|.+..|
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 345566666666665543 222334455556666666555
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.33 E-value=0.07 Score=43.88 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=40.8
Q ss_pred CCcccc-CCCCccEEEEcC-ccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCC
Q 014120 28 LPQIVF-YLKSIYVLDFEF-CKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGL 104 (430)
Q Consensus 28 LP~~l~-~~~~L~~L~Ls~-~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~ 104 (430)
+|...| +|++|+.+.+.. +.......|.++++|+.+.+..+ +..-. ...+.+|+.|+.+.+... ..+..-.+..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIG-DNAFSNCKSLESITFPNNLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccc-eeeeeccccccccccccccccccccccccc
Confidence 444444 467888888875 22223356788888888888764 31110 234667777888888541 12233334445
Q ss_pred CCcCEEEcC
Q 014120 105 NKLKEIKLD 113 (430)
Q Consensus 105 ~~L~~L~l~ 113 (430)
++|+.+.+.
T Consensus 81 ~~l~~i~~~ 89 (129)
T PF13306_consen 81 TNLKNIDIP 89 (129)
T ss_dssp TTECEEEET
T ss_pred ccccccccC
Confidence 666666654
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.89 E-value=0.0043 Score=64.53 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC--CCCccccCCCCCcCEEEcCCCcCCceEe-Ee-eccce
Q 014120 54 TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP--GLKSLQLLGLNKLKEIKLDSNRCGLERV-YI-NGVNV 129 (430)
Q Consensus 54 ~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~--~l~~l~l~~~~~L~~L~l~~c~~~l~~l-~i-~~p~L 129 (430)
+.-++.|+.|+|++|++++-. .+..||.|.+|||++|. .+..+...+|. |..|.+.++. +..+ .+ ...+|
T Consensus 183 Lqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~--l~tL~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA--LTTLRGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeecccH--HHhhhhHHhhhhh
Confidence 345788999999999886542 45678899999998874 24455555665 8888887764 2211 11 13455
Q ss_pred eEEEeecCCCC--ce-eccCCCCcCceEEccCCCCC
Q 014120 130 HSVDIKVYLEP--CE-VNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 130 ~~L~l~~~~~~--~~-~~~~~l~~L~~L~L~~~~i~ 162 (430)
+.|+++.+.+. .. .-+..+..|+.|.|.||.+.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66666552221 01 11244567788888888763
No 70
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=92.56 E-value=0.16 Score=29.41 Aligned_cols=25 Identities=36% Similarity=0.777 Sum_probs=21.3
Q ss_pred CCCEEEEeeecC-ChHHHHHHhcCCC
Q 014120 59 SLRKLCLSFVHV-DDEVIRDMVAGCP 83 (430)
Q Consensus 59 ~L~~L~Ls~~~~-~~~~l~~l~~~~p 83 (430)
+||+|+|..+.+ .+..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999988 4457899999997
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=0.04 Score=48.90 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=63.4
Q ss_pred ccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ 100 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~ 100 (430)
..+.+|.....--.++.++-+++.+-. -..+.++++++.|.+.+|. +.+..+..+-.-.|+|+.|+|++|+.+++-.
T Consensus 89 g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 89 GYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred ceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 345777554444457888888764332 2467788899999999985 4777788877778999999999999887755
Q ss_pred cC---CCCCcCEEEcC
Q 014120 101 LL---GLNKLKEIKLD 113 (430)
Q Consensus 101 l~---~~~~L~~L~l~ 113 (430)
+. .+++|+.|.+.
T Consensus 169 L~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHHHHhhhhHHHHhc
Confidence 43 23556655554
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.05 E-value=0.048 Score=45.55 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=50.7
Q ss_pred EecCCccccCCccccC---CCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 19 DVGCCRIYNLPQIVFY---LKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 19 ~~~~~~~~~LP~~l~~---~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
+++.+....+|+.+.. ...|+..+|+++.+.. | .....+|-++.|+|++|.+++- +.-+..+|.|+.|+++.+
T Consensus 33 dLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv--PeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 33 DLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV--PEELAAMPALRSLNLRFN 110 (177)
T ss_pred ccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc--hHHHhhhHHhhhcccccC
Confidence 4444444445555444 4556777888887653 4 3345678899999999988654 334778889999999987
Q ss_pred CC
Q 014120 94 PG 95 (430)
Q Consensus 94 ~~ 95 (430)
+.
T Consensus 111 ~l 112 (177)
T KOG4579|consen 111 PL 112 (177)
T ss_pred cc
Confidence 65
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.33 E-value=0.29 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCCCCEEEEeeecCChHHHHHH
Q 014120 57 LFSLRKLCLSFVHVDDEVIRDM 78 (430)
Q Consensus 57 l~~L~~L~Ls~~~~~~~~l~~l 78 (430)
+++|++|+|++|.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4788999999998877766554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.65 E-value=0.48 Score=38.77 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=26.3
Q ss_pred CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCcCEEEcC
Q 014120 52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEIKLD 113 (430)
Q Consensus 52 ~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L~~L~l~ 113 (430)
..|.++++|+.+.+... +..- -...+.+|+.|+.+.+... ..+..-.+.++++++.+.+.
T Consensus 6 ~~F~~~~~l~~i~~~~~-~~~I-~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT-IKKI-GENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTT-TT--EEEETST---EE--TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEET
T ss_pred HHHhCCCCCCEEEECCC-eeEe-Chhhcccccccccccccccccccceeeeeccccccccccc
Confidence 45667778888877642 2110 0223567777777777642 12223334445556655554
No 75
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=85.65 E-value=0.54 Score=27.17 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=20.6
Q ss_pred cCceEEccCCCCChH-HHHHHhcCCC
Q 014120 150 NLTHLRLDGLSITDK-WLYNQISELP 174 (430)
Q Consensus 150 ~L~~L~L~~~~i~~~-~l~~l~~~~p 174 (430)
+||+|+|..+.+.++ .+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 488999999888664 6888999887
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.73 E-value=0.36 Score=42.99 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=21.6
Q ss_pred CCCCcCceEEccCCCC-ChHHHHHHhcCCCccceeccccccccc
Q 014120 146 SSCKNLTHLRLDGLSI-TDKWLYNQISELPFLEYLALHYCMKLR 188 (430)
Q Consensus 146 ~~l~~L~~L~L~~~~i-~~~~l~~l~~~~p~Le~L~L~~c~~l~ 188 (430)
.+++.++.|.+.+|.- .|..+..+-.-.|+|+.|+|++|+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3444555555555533 223344444445566666666665553
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.16 E-value=1.1 Score=25.60 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=13.6
Q ss_pred CCCCCEEEEeeec-CChHHHHHH
Q 014120 57 LFSLRKLCLSFVH-VDDEVIRDM 78 (430)
Q Consensus 57 l~~L~~L~Ls~~~-~~~~~l~~l 78 (430)
+++|+.|+|++|. +++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 3566777777764 566665554
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.72 E-value=0.74 Score=23.60 Aligned_cols=12 Identities=42% Similarity=0.384 Sum_probs=5.0
Q ss_pred CCCEEEEeeecC
Q 014120 59 SLRKLCLSFVHV 70 (430)
Q Consensus 59 ~L~~L~Ls~~~~ 70 (430)
+|+.|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555543
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.45 E-value=0.24 Score=41.51 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=30.9
Q ss_pred CceEEEEEecCCccccCCccccC-CCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120 12 NVKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~ 70 (430)
+.+...++++++..-.+|+.+.. .+.++.|+|+++.+.. |..+..+|.||.|+++.|.+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 33333455555555555555433 3355666666655433 44455566666666666655
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.69 E-value=1.5 Score=25.72 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCCCEEEEeeecCChHHHHHHh
Q 014120 58 FSLRKLCLSFVHVDDEVIRDMV 79 (430)
Q Consensus 58 ~~L~~L~Ls~~~~~~~~l~~l~ 79 (430)
++|++|+|++|.+.+++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5789999999999877665544
No 81
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=76.09 E-value=5.2 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred CCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 293 ~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
...+|+.+++..+. +...+ .+++..+|+++|.||+++|.
T Consensus 12 l~s~Lk~v~~~~f~-g~~~e-~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 12 LLSHLKFVEIKGFR-GEENE-LEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hhheeEEEEEEeee-CcHHH-HHHHHHHHhhhhhhcEEEEE
Confidence 34688889998775 33333 36778999999999999984
No 82
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=74.51 E-value=1.9 Score=23.59 Aligned_cols=10 Identities=20% Similarity=0.125 Sum_probs=4.5
Q ss_pred ccEEEEcCcc
Q 014120 38 IYVLDFEFCK 47 (430)
Q Consensus 38 L~~L~Ls~~~ 47 (430)
|++|+|++|.
T Consensus 2 L~~Ldls~n~ 11 (22)
T PF00560_consen 2 LEYLDLSGNN 11 (22)
T ss_dssp ESEEEETSSE
T ss_pred ccEEECCCCc
Confidence 4444444443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=57.18 E-value=6.7 Score=22.17 Aligned_cols=14 Identities=43% Similarity=0.375 Sum_probs=10.1
Q ss_pred CCCCCEEEEeeecC
Q 014120 57 LFSLRKLCLSFVHV 70 (430)
Q Consensus 57 l~~L~~L~Ls~~~~ 70 (430)
+++|++|+|++|.+
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00370 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 46777777777765
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=57.18 E-value=6.7 Score=22.17 Aligned_cols=14 Identities=43% Similarity=0.375 Sum_probs=10.1
Q ss_pred CCCCCEEEEeeecC
Q 014120 57 LFSLRKLCLSFVHV 70 (430)
Q Consensus 57 l~~L~~L~Ls~~~~ 70 (430)
+++|++|+|++|.+
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00369 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 46777777777765
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.63 E-value=12 Score=38.56 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=20.7
Q ss_pred cCceEEccCCCCCh------HHHHHHhcCCCccceecc
Q 014120 150 NLTHLRLDGLSITD------KWLYNQISELPFLEYLAL 181 (430)
Q Consensus 150 ~L~~L~L~~~~i~~------~~l~~l~~~~p~Le~L~L 181 (430)
-|++|-+.||.++. +-+..+-..||.|..||=
T Consensus 271 ~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred CHHHeeecCCccccchhhhHHHHHHHHHhcchheeecC
Confidence 47788888887754 223334456888877763
No 86
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=48.23 E-value=27 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=29.9
Q ss_pred CCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEecCc
Q 014120 295 TYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPN 336 (430)
Q Consensus 295 ~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~~~~ 336 (430)
.+|+.+.+..+. +.... .+++..+|+++|.||.+.|....
T Consensus 5 ~~Lk~v~i~~f~-g~~~e-~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYR-GTEEE-KELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEecc-CcHHH-HHHHHHHHhcchhheEEEEEeec
Confidence 568888888875 33333 35678999999999999996543
No 87
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=38.20 E-value=7 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=18.1
Q ss_pred ceeeeeecCchhhHHHHHHHHHH
Q 014120 391 NRESFSSEDGDIMEKINDLWKSL 413 (430)
Q Consensus 391 ~~~~~~~~~~~~l~~~~~~~~~~ 413 (430)
+++.|+++|.++++||..-=.||
T Consensus 4 ~iV~YLv~nPevl~kl~~g~asL 26 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEGEASL 26 (57)
T ss_pred HHHHHHHHChHHHHHHHcCCeeE
Confidence 57899999999999997643333
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=35.79 E-value=24 Score=20.36 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=9.0
Q ss_pred CCCCCEEEEeeecC
Q 014120 57 LFSLRKLCLSFVHV 70 (430)
Q Consensus 57 l~~L~~L~Ls~~~~ 70 (430)
+++|+.|+|+.|.+
T Consensus 1 L~~L~~L~L~~NkI 14 (26)
T smart00365 1 LTNLEELDLSQNKI 14 (26)
T ss_pred CCccCEEECCCCcc
Confidence 35667777777655
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.97 E-value=81 Score=32.78 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCCccEEEEcCccCCCC----CCCCCCCCCCEEEEeee--cC-ChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 35 LKSIYVLDFEFCKLEPP----RSTVTLFSLRKLCLSFV--HV-DDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~----~~~~~l~~L~~L~Ls~~--~~-~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
.+.+..+.|+++.+..- ......|+|+.|+|++| .+ ++..+.. + +..-||+|-+.+++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~-k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-L-KGLPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-h-cCCCHHHeeecCCcc
Confidence 34556666666554331 12234677777777777 23 2222221 1 234467777777654
Done!