Query 014120
Match_columns 430
No_of_seqs 431 out of 2200
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 151.4 11.8 196 9-211 79-293 (328)
2 4fmz_A Internalin; leucine ric 99.6 8.1E-16 2.8E-20 149.4 10.1 205 11-226 44-253 (347)
3 4eco_A Uncharacterized protein 99.6 1.2E-15 4E-20 160.7 7.8 286 28-333 239-574 (636)
4 3rgz_A Protein brassinosteroid 99.6 9.9E-16 3.4E-20 164.8 6.4 197 28-227 92-305 (768)
5 1o6v_A Internalin A; bacterial 99.6 9.5E-15 3.2E-19 148.0 12.4 204 11-226 46-253 (466)
6 4fmz_A Internalin; leucine ric 99.6 8.7E-15 3E-19 142.1 11.5 270 11-333 66-341 (347)
7 4ecn_A Leucine-rich repeat pro 99.6 2.8E-15 9.4E-20 162.1 8.4 286 28-333 481-814 (876)
8 3rgz_A Protein brassinosteroid 99.6 2.3E-15 7.9E-20 161.9 6.7 193 33-227 197-405 (768)
9 2id5_A Lingo-1, leucine rich r 99.6 2.1E-15 7.1E-20 153.1 6.0 286 21-332 19-327 (477)
10 1o6v_A Internalin A; bacterial 99.5 4.1E-14 1.4E-18 143.3 14.5 287 11-332 68-382 (466)
11 3bz5_A Internalin-J, INLJ; leu 99.5 1.3E-14 4.5E-19 146.7 10.7 295 10-333 41-347 (457)
12 3vq2_A TLR4, TOLL-like recepto 99.5 2.6E-15 9E-20 156.8 4.5 69 25-93 92-163 (606)
13 3ogk_B Coronatine-insensitive 99.5 1.6E-14 5.4E-19 150.3 8.8 268 56-333 190-496 (592)
14 3v47_A TOLL-like receptor 5B a 99.5 3.6E-14 1.2E-18 142.8 11.0 299 12-332 31-402 (455)
15 3j0a_A TOLL-like receptor 5; m 99.5 2.5E-14 8.7E-19 155.4 10.5 205 20-226 80-372 (844)
16 3t6q_A CD180 antigen; protein- 99.5 7E-15 2.4E-19 153.6 5.1 141 20-161 40-191 (606)
17 2id5_A Lingo-1, leucine rich r 99.5 6.1E-15 2.1E-19 149.7 3.6 277 11-306 32-331 (477)
18 3t6q_A CD180 antigen; protein- 99.5 4.7E-14 1.6E-18 147.3 9.7 274 17-332 258-554 (606)
19 3o6n_A APL1; leucine-rich repe 99.5 2.7E-14 9.4E-19 141.1 7.4 202 11-227 45-259 (390)
20 2z81_A CD282 antigen, TOLL-lik 99.5 1E-14 3.5E-19 150.4 3.9 58 261-332 447-504 (549)
21 2ast_B S-phase kinase-associat 99.5 8.1E-14 2.8E-18 134.5 9.3 218 3-226 38-282 (336)
22 3oja_B Anopheles plasmodium-re 99.5 3.9E-14 1.3E-18 148.0 7.5 154 20-184 58-221 (597)
23 2p1m_B Transport inhibitor res 99.5 8.2E-14 2.8E-18 144.9 9.5 289 34-333 103-489 (594)
24 4ecn_A Leucine-rich repeat pro 99.5 6.4E-14 2.2E-18 151.4 8.7 291 24-333 436-784 (876)
25 1z7x_W Ribonuclease inhibitor; 99.5 4.2E-14 1.4E-18 142.6 6.7 317 7-333 24-406 (461)
26 4eco_A Uncharacterized protein 99.5 1.4E-14 4.8E-19 152.5 2.8 172 51-227 199-413 (636)
27 3o6n_A APL1; leucine-rich repe 99.5 8.1E-13 2.8E-17 130.4 15.3 121 11-136 69-195 (390)
28 4fcg_A Uncharacterized protein 99.4 1E-13 3.4E-18 134.0 8.4 186 35-226 80-287 (328)
29 3zyi_A Leucine-rich repeat-con 99.4 3.7E-13 1.3E-17 135.7 12.4 199 20-227 61-277 (452)
30 3j0a_A TOLL-like receptor 5; m 99.4 2.5E-13 8.5E-18 147.6 11.2 164 16-184 7-184 (844)
31 3bz5_A Internalin-J, INLJ; leu 99.4 6.5E-13 2.2E-17 134.2 13.5 178 11-205 64-243 (457)
32 1xku_A Decorin; proteoglycan, 99.4 3.7E-13 1.3E-17 129.8 10.6 272 23-333 41-327 (330)
33 2p1m_B Transport inhibitor res 99.4 1.1E-13 3.8E-18 143.9 7.2 147 34-181 154-345 (594)
34 2z80_A TOLL-like receptor 2, v 99.4 5.3E-13 1.8E-17 130.1 11.5 263 18-306 36-312 (353)
35 2z7x_B TOLL-like receptor 1, v 99.4 4.9E-13 1.7E-17 137.0 11.6 140 17-161 4-150 (520)
36 3zyj_A Leucine-rich repeat-con 99.4 5.6E-13 1.9E-17 133.9 11.0 199 18-227 48-266 (440)
37 1z7x_W Ribonuclease inhibitor; 99.4 1.9E-13 6.7E-18 137.6 7.1 191 32-226 24-266 (461)
38 3v47_A TOLL-like receptor 5B a 99.4 3.8E-14 1.3E-18 142.7 1.8 161 18-184 15-190 (455)
39 2z80_A TOLL-like receptor 2, v 99.4 1.7E-12 5.8E-17 126.4 13.3 209 11-227 52-288 (353)
40 3oja_B Anopheles plasmodium-re 99.4 1.6E-12 5.5E-17 135.8 13.9 252 11-306 75-356 (597)
41 2ft3_A Biglycan; proteoglycan, 99.4 3.8E-13 1.3E-17 129.9 8.5 256 58-333 54-328 (332)
42 1ziw_A TOLL-like receptor 3; i 99.4 1.6E-13 5.5E-18 145.3 6.2 162 18-184 9-181 (680)
43 1ozn_A Reticulon 4 receptor; N 99.4 8.6E-13 2.9E-17 124.5 10.5 202 17-226 15-235 (285)
44 3vq2_A TLR4, TOLL-like recepto 99.4 2.5E-13 8.7E-18 141.7 7.3 256 32-332 281-552 (606)
45 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-12 3.7E-17 137.1 12.0 192 11-227 40-232 (622)
46 1ziw_A TOLL-like receptor 3; i 99.4 2.1E-13 7.3E-18 144.3 6.3 282 37-332 249-591 (680)
47 2ast_B S-phase kinase-associat 99.4 4.1E-14 1.4E-18 136.6 0.5 196 5-205 64-282 (336)
48 1h6u_A Internalin H; cell adhe 99.4 4.1E-12 1.4E-16 121.5 14.0 89 24-116 52-140 (308)
49 3ogk_B Coronatine-insensitive 99.4 2.8E-13 9.5E-18 140.9 4.9 282 35-333 191-521 (592)
50 1h6u_A Internalin H; cell adhe 99.4 3.1E-12 1.1E-16 122.4 11.6 185 34-227 39-228 (308)
51 2z81_A CD282 antigen, TOLL-lik 99.4 1.3E-11 4.4E-16 127.2 17.1 33 295-333 310-342 (549)
52 1ogq_A PGIP-2, polygalacturona 99.3 1.1E-12 3.6E-17 125.9 8.1 208 12-227 51-279 (313)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.6E-13 1.6E-17 138.7 5.6 138 17-161 35-181 (562)
54 3zyi_A Leucine-rich repeat-con 99.3 2.5E-12 8.7E-17 129.6 10.7 210 11-226 75-300 (452)
55 1xku_A Decorin; proteoglycan, 99.3 7.6E-12 2.6E-16 120.5 13.5 206 12-227 53-274 (330)
56 2z66_A Variable lymphocyte rec 99.3 8E-13 2.7E-17 126.0 6.4 206 18-227 12-234 (306)
57 2z7x_B TOLL-like receptor 1, v 99.3 1.2E-11 3.9E-16 126.8 15.5 144 146-332 321-475 (520)
58 3o53_A Protein LRIM1, AGAP0063 99.3 2.6E-13 8.8E-18 130.4 2.1 183 35-227 33-225 (317)
59 1ogq_A PGIP-2, polygalacturona 99.3 1.4E-12 4.9E-17 125.0 6.8 193 11-209 76-281 (313)
60 3zyj_A Leucine-rich repeat-con 99.3 4.9E-12 1.7E-16 127.0 10.3 210 11-227 64-290 (440)
61 3oja_A Leucine-rich immune mol 99.3 1.8E-12 6.1E-17 132.1 7.0 193 25-227 19-225 (487)
62 1jl5_A Outer protein YOPM; leu 99.3 2E-11 6.9E-16 123.1 14.3 53 36-93 111-163 (454)
63 2o6q_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 117.7 10.0 182 18-226 21-215 (270)
64 1ozn_A Reticulon 4 receptor; N 99.3 3.5E-12 1.2E-16 120.3 8.0 188 11-205 32-235 (285)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.8E-11 6.3E-16 126.7 13.6 143 146-332 350-504 (562)
66 2xwt_C Thyrotropin receptor; s 99.3 8E-12 2.7E-16 114.7 9.7 191 25-224 23-234 (239)
67 2z63_A TOLL-like receptor 4, v 99.3 1.3E-12 4.5E-17 135.1 4.6 171 28-205 274-455 (570)
68 3oja_A Leucine-rich immune mol 99.2 1.7E-11 5.9E-16 124.7 10.5 201 12-226 35-247 (487)
69 2z66_A Variable lymphocyte rec 99.2 2.4E-12 8.1E-17 122.7 3.4 208 11-227 28-259 (306)
70 2z62_A TOLL-like receptor 4, v 99.2 7.9E-12 2.7E-16 117.3 6.5 203 19-227 13-235 (276)
71 2xwt_C Thyrotropin receptor; s 99.2 2E-11 7E-16 112.0 8.9 189 11-206 31-237 (239)
72 1h6t_A Internalin B; cell adhe 99.2 3.2E-11 1.1E-15 114.3 10.2 163 34-205 44-210 (291)
73 2z63_A TOLL-like receptor 4, v 99.2 1E-11 3.5E-16 128.3 7.0 224 11-243 282-526 (570)
74 1jl5_A Outer protein YOPM; leu 99.2 2.1E-11 7.3E-16 123.0 9.0 135 12-162 72-208 (454)
75 1wwl_A Monocyte differentiatio 99.2 2.2E-11 7.5E-16 116.5 8.6 176 34-226 93-284 (312)
76 2ca6_A RAN GTPase-activating p 99.2 1.6E-11 5.5E-16 121.0 7.7 93 24-116 20-133 (386)
77 3g06_A SSPH2 (leucine-rich rep 99.2 1.9E-10 6.5E-15 120.2 15.9 191 11-226 61-251 (622)
78 2ft3_A Biglycan; proteoglycan, 99.2 2.4E-11 8.2E-16 117.2 8.5 207 11-227 54-275 (332)
79 4ezg_A Putative uncharacterize 99.2 3.6E-11 1.2E-15 107.1 9.0 146 33-205 41-191 (197)
80 1wwl_A Monocyte differentiatio 99.2 9.1E-12 3.1E-16 119.2 5.3 188 10-205 94-306 (312)
81 2o6q_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 112.8 8.7 170 11-205 37-215 (270)
82 3rfs_A Internalin B, repeat mo 99.2 2.3E-11 7.9E-16 114.0 7.6 163 35-205 40-215 (272)
83 1h6t_A Internalin B; cell adhe 99.2 5E-11 1.7E-15 113.0 9.7 164 11-185 46-211 (291)
84 2z62_A TOLL-like receptor 4, v 99.2 4.5E-11 1.5E-15 112.1 9.2 164 58-227 28-211 (276)
85 3m19_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 110.5 8.0 162 18-205 19-189 (251)
86 1m9s_A Internalin B; cell inva 99.2 5.7E-11 1.9E-15 123.9 9.3 152 24-184 54-207 (605)
87 2ca6_A RAN GTPase-activating p 99.2 2.4E-11 8.2E-16 119.7 6.1 215 11-226 32-313 (386)
88 3rfs_A Internalin B, repeat mo 99.1 5.6E-11 1.9E-15 111.4 8.1 185 10-205 40-232 (272)
89 4glp_A Monocyte differentiatio 99.1 2.2E-11 7.4E-16 116.4 4.5 189 34-226 89-304 (310)
90 1p9a_G Platelet glycoprotein I 99.1 1.1E-10 3.9E-15 110.5 9.4 179 19-226 16-205 (290)
91 3o53_A Protein LRIM1, AGAP0063 99.1 2.3E-11 7.8E-16 116.7 4.4 167 36-209 99-276 (317)
92 1xeu_A Internalin C; cellular 99.1 5.9E-11 2E-15 110.8 5.7 88 23-116 29-117 (263)
93 1m9s_A Internalin B; cell inva 99.1 1.6E-10 5.3E-15 120.6 9.4 164 33-205 40-207 (605)
94 4glp_A Monocyte differentiatio 99.1 6.6E-11 2.3E-15 113.1 5.9 190 35-227 63-283 (310)
95 4ay9_X Follicle-stimulating ho 99.1 3.5E-10 1.2E-14 110.0 10.0 202 19-225 15-232 (350)
96 4ezg_A Putative uncharacterize 99.0 8.4E-10 2.9E-14 98.1 10.7 147 54-226 40-191 (197)
97 1p9a_G Platelet glycoprotein I 99.0 1.2E-10 4.2E-15 110.3 5.2 168 11-205 31-205 (290)
98 4g8a_A TOLL-like receptor 4; l 99.0 2.8E-09 9.4E-14 111.1 15.4 138 23-184 41-183 (635)
99 2o6s_A Variable lymphocyte rec 99.0 6.4E-10 2.2E-14 99.6 9.1 138 19-161 13-160 (208)
100 3goz_A Leucine-rich repeat-con 99.0 2.5E-10 8.6E-15 111.5 6.5 177 29-209 15-238 (362)
101 3e6j_A Variable lymphocyte rec 99.0 8.6E-10 2.9E-14 100.6 8.5 139 18-183 24-168 (229)
102 2v9t_B SLIT homolog 2 protein 99.0 9.2E-10 3.1E-14 99.8 8.4 142 18-183 16-161 (220)
103 2ell_A Acidic leucine-rich nuc 98.9 1.9E-09 6.6E-14 93.0 8.9 130 35-186 23-159 (168)
104 2ell_A Acidic leucine-rich nuc 98.9 9.3E-10 3.2E-14 95.1 6.6 127 12-161 25-159 (168)
105 2je0_A Acidic leucine-rich nuc 98.9 1.9E-09 6.4E-14 91.1 8.4 125 36-182 17-148 (149)
106 3m19_A Variable lymphocyte rec 98.9 2.6E-09 9E-14 98.6 9.8 149 11-184 35-189 (251)
107 2v70_A SLIT-2, SLIT homolog 2 98.9 1.4E-09 4.9E-14 98.5 7.7 144 17-184 15-163 (220)
108 1xeu_A Internalin C; cellular 98.9 5.7E-10 1.9E-14 104.1 4.6 162 35-205 18-182 (263)
109 4ay9_X Follicle-stimulating ho 98.9 5.9E-09 2E-13 101.2 11.1 194 11-211 30-239 (350)
110 3cvr_A Invasion plasmid antige 98.9 4.1E-09 1.4E-13 108.9 10.4 173 11-205 59-240 (571)
111 3goz_A Leucine-rich repeat-con 98.9 1.2E-09 4.2E-14 106.6 6.0 189 12-206 23-264 (362)
112 3cvr_A Invasion plasmid antige 98.8 7.2E-09 2.5E-13 107.1 10.4 170 36-226 59-240 (571)
113 1a9n_A U2A', U2A'; complex (nu 98.8 4.5E-09 1.5E-13 91.6 6.3 132 31-185 14-151 (176)
114 4g8a_A TOLL-like receptor 4; l 98.8 1.7E-08 6E-13 105.0 11.6 102 12-116 53-159 (635)
115 2xot_A Amphoterin-induced prot 98.8 7.8E-09 2.7E-13 100.9 7.2 139 18-162 23-176 (361)
116 2je0_A Acidic leucine-rich nuc 98.8 3.5E-09 1.2E-13 89.5 3.8 127 56-203 15-148 (149)
117 2v9t_B SLIT homolog 2 protein 98.7 2.4E-08 8.2E-13 90.4 9.1 129 11-162 32-165 (220)
118 2xot_A Amphoterin-induced prot 98.7 1.2E-08 4.2E-13 99.4 7.6 138 39-184 21-173 (361)
119 1ds9_A Outer arm dynein; leuci 98.7 3.6E-10 1.2E-14 100.6 -4.1 136 23-180 35-180 (198)
120 2v70_A SLIT-2, SLIT homolog 2 98.7 4.1E-08 1.4E-12 88.8 8.9 128 12-162 33-166 (220)
121 2o6s_A Variable lymphocyte rec 98.7 1.4E-08 4.8E-13 90.8 5.2 140 12-162 29-178 (208)
122 3e4g_A ATP synthase subunit S, 98.7 2.9E-08 1E-12 86.0 7.0 97 24-121 49-154 (176)
123 1w8a_A SLIT protein; signaling 98.7 6.2E-08 2.1E-12 85.6 8.7 121 18-162 13-139 (192)
124 2wfh_A SLIT homolog 2 protein 98.6 6.7E-08 2.3E-12 85.5 8.3 121 18-161 15-138 (193)
125 3e6j_A Variable lymphocyte rec 98.6 1.2E-07 4E-12 86.3 9.9 128 11-162 40-172 (229)
126 2o6r_A Variable lymphocyte rec 98.6 2.4E-07 8.4E-12 80.4 10.1 123 18-163 12-138 (177)
127 1dce_A Protein (RAB geranylger 98.5 5.3E-08 1.8E-12 100.7 6.0 123 37-180 442-566 (567)
128 1a9n_A U2A', U2A'; complex (nu 98.5 1.1E-07 3.9E-12 82.5 5.8 124 18-163 24-154 (176)
129 4b8c_D Glucose-repressible alc 98.5 3.4E-08 1.2E-12 105.2 2.5 107 52-163 218-330 (727)
130 3un9_A NLR family member X1; l 98.5 1.2E-08 4.2E-13 99.9 -1.7 157 35-209 71-252 (372)
131 1w8a_A SLIT protein; signaling 98.4 1.7E-07 5.8E-12 82.8 4.8 124 39-185 11-137 (192)
132 2wfh_A SLIT homolog 2 protein 98.4 7.3E-07 2.5E-11 78.8 7.8 103 11-116 31-137 (193)
133 3e4g_A ATP synthase subunit S, 98.3 2.5E-07 8.5E-12 80.2 3.9 43 57-100 60-102 (176)
134 2ra8_A Uncharacterized protein 98.3 1.8E-06 6.1E-11 84.1 10.2 56 34-91 170-227 (362)
135 3sb4_A Hypothetical leucine ri 98.3 4.4E-07 1.5E-11 87.1 5.2 71 148-224 225-305 (329)
136 1dce_A Protein (RAB geranylger 98.3 1.1E-06 3.7E-11 90.9 8.1 99 12-116 442-544 (567)
137 3g39_A Variable lymphocyte rec 98.3 1.5E-06 5.2E-11 75.0 7.7 95 18-116 14-113 (170)
138 2r9u_A Variable lymphocyte rec 98.3 1.8E-06 6E-11 75.0 7.7 96 18-116 17-116 (174)
139 3sb4_A Hypothetical leucine ri 98.3 1E-06 3.6E-11 84.5 6.6 141 35-182 100-305 (329)
140 4b8c_D Glucose-repressible alc 98.2 2.9E-07 9.8E-12 98.1 1.1 142 36-186 173-328 (727)
141 3un9_A NLR family member X1; l 98.2 2.3E-07 8E-12 90.8 -0.3 164 5-185 66-250 (372)
142 2ra8_A Uncharacterized protein 98.1 2E-06 7E-11 83.7 5.9 152 55-209 136-320 (362)
143 2o6r_A Variable lymphocyte rec 98.1 5.4E-06 1.9E-10 71.7 7.9 102 11-116 28-135 (177)
144 4fdw_A Leucine rich hypothetic 98.0 1.6E-05 5.4E-10 78.5 8.8 194 25-227 146-356 (401)
145 1ds9_A Outer arm dynein; leuci 97.9 4.2E-07 1.4E-11 80.5 -2.9 107 53-185 43-151 (198)
146 2r9u_A Variable lymphocyte rec 97.8 3.4E-05 1.2E-09 66.7 7.7 101 38-162 14-118 (174)
147 2ifg_A High affinity nerve gro 97.7 3E-05 1E-09 74.6 6.2 95 18-116 13-114 (347)
148 3g39_A Variable lymphocyte rec 97.7 2.6E-05 8.8E-10 67.2 5.1 82 11-95 30-114 (170)
149 1io0_A Tropomodulin; LRR prote 97.6 5.8E-05 2E-09 66.0 5.5 40 145-184 117-161 (185)
150 4fdw_A Leucine rich hypothetic 97.3 0.0007 2.4E-08 66.6 9.2 81 100-184 266-355 (401)
151 2ifg_A High affinity nerve gro 97.1 0.00082 2.8E-08 64.4 7.3 100 39-162 11-116 (347)
152 1io0_A Tropomodulin; LRR prote 97.1 0.00072 2.5E-08 58.9 6.0 59 146-205 90-161 (185)
153 3rw6_A Nuclear RNA export fact 96.4 0.0013 4.5E-08 60.7 2.9 84 78-181 165-258 (267)
154 3rw6_A Nuclear RNA export fact 96.2 0.0022 7.5E-08 59.3 3.0 78 34-113 168-259 (267)
155 4fs7_A Uncharacterized protein 95.7 0.014 4.7E-07 56.9 6.5 143 34-182 206-351 (394)
156 4fs7_A Uncharacterized protein 95.7 0.034 1.1E-06 54.1 9.2 145 29-182 223-374 (394)
157 4gt6_A Cell surface protein; l 95.6 0.013 4.5E-07 57.0 5.9 61 52-114 259-320 (394)
158 4gt6_A Cell surface protein; l 93.2 0.094 3.2E-06 50.9 5.5 122 32-182 261-386 (394)
159 4h09_A Hypothetical leucine ri 92.0 0.36 1.2E-05 46.3 7.9 80 31-114 212-295 (379)
160 4h09_A Hypothetical leucine ri 92.0 0.29 1E-05 46.9 7.2 82 31-114 189-272 (379)
161 1pgv_A TMD-1, tropomodulin TMD 91.5 0.37 1.3E-05 42.0 6.6 36 149-184 98-136 (197)
162 3rfe_A Platelet glycoprotein I 89.4 0.44 1.5E-05 38.4 4.9 51 18-70 13-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 87.9 0.17 5.7E-06 44.2 1.5 82 34-115 39-136 (197)
164 3rfe_A Platelet glycoprotein I 76.7 1.4 4.7E-05 35.4 2.6 56 39-95 11-67 (130)
165 2lz0_A Uncharacterized protein 32.1 47 0.0016 24.9 3.9 33 35-67 19-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=3.5e-16 Score=151.39 Aligned_cols=196 Identities=19% Similarity=0.260 Sum_probs=139.1
Q ss_pred HhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 9 FASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 9 ~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
...+++.|+|.. +....+|+.++.+++|++|+|+++.+.. |..+.++++|++|+|++|.++ .++..+.++++|++
T Consensus 79 ~~~~l~~L~L~~--n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRS--VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEES--SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCE
T ss_pred cccceeEEEccC--CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCE
Confidence 346787777655 4567999999999999999999987654 667899999999999999886 34556889999999
Q ss_pred EEeeeCCCCCcccc-----------CCCCCcCEEEcCCCcCCceEeE---eeccceeEEEeecCCCC-ceeccCCCCcCc
Q 014120 88 ININNCPGLKSLQL-----------LGLNKLKEIKLDSNRCGLERVY---INGVNVHSVDIKVYLEP-CEVNVSSCKNLT 152 (430)
Q Consensus 88 L~L~~c~~l~~l~l-----------~~~~~L~~L~l~~c~~~l~~l~---i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~ 152 (430)
|++++|..+..+.. .++++|++|++++|. +..+. -.+++|++|++++.... .+..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 99999876554432 236888888888764 22221 13567777777773222 223566777788
Q ss_pred eEEccCCCCChHHHHHHhcCCCccceecccccccccccccc---ccccceEecccccccccc
Q 014120 153 HLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEF 211 (430)
Q Consensus 153 ~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~ 211 (430)
.|++++|.+.+ .++..+.++++|+.|++++|+....++.. .++|+.|++++|..++.+
T Consensus 233 ~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 233 ELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp EEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred EEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 88887776643 33445566777888888777766665542 467777777777544443
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=8.1e-16 Score=149.42 Aligned_cols=205 Identities=14% Similarity=0.161 Sum_probs=129.7
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
..++.+++. ++....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.+++- + .+.++++|++|++
T Consensus 44 ~~L~~L~l~--~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVA--GEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECC--SSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEEC
T ss_pred ccccEEEEe--CCccccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEEC
Confidence 455555543 34456666 3667888888888888765532377888888888888877542 2 3678888888888
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCcCCceEe--EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l--~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~ 168 (430)
++|..-....+.++++|++|++++|. ....+ ...+++|++|++++........+..+++|+.|++++|.+.+ ++.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~ 194 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--ISP 194 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC--CGG
T ss_pred cCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc--ccc
Confidence 88753322235667888888888875 33222 12357788888777332212236677888888888887744 222
Q ss_pred HhcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEecce
Q 014120 169 QISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY 226 (430)
Q Consensus 169 l~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~ 226 (430)
+..++.|+.|+++++......+. ..++|+.|++++| .++.+. -..++|+.+...++
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred -ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCC
Confidence 56777888888876543221112 2567888888777 454433 23466666665544
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=1.2e-15 Score=160.74 Aligned_cols=286 Identities=12% Similarity=0.081 Sum_probs=187.5
Q ss_pred CCcccc--CCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcC------CCCccEEEeeeCCCC
Q 014120 28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAG------CPLIEYININNCPGL 96 (430)
Q Consensus 28 LP~~l~--~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~------~p~Le~L~L~~c~~l 96 (430)
+|+.+. ++++|++|+|++|.+.. |..+.++++|++|+|++|. +++..++..+.. +++|++|++++|..-
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 999999 99999999999987543 6788999999999999998 777445655555 499999999998543
Q ss_pred Ccc----ccCCCCCcCEEEcCCCcCCce-EeE--eeccceeEEEeecCCCC-ceeccCCCCc-CceEEccCCCCChHHHH
Q 014120 97 KSL----QLLGLNKLKEIKLDSNRCGLE-RVY--INGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLY 167 (430)
Q Consensus 97 ~~l----~l~~~~~L~~L~l~~c~~~l~-~l~--i~~p~L~~L~l~~~~~~-~~~~~~~l~~-L~~L~L~~~~i~~~~l~ 167 (430)
.+ .+.++++|++|++++|. +. .+. ...++|++|++++.... .+..+.++++ |+.|++++|.++ .++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~--l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp 393 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQ--LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIP 393 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCC--CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCc--CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccc
Confidence 33 35678999999999875 22 332 23578999999883222 2345778888 999999999985 455
Q ss_pred HHhcC--CCccceeccccccccccccc----------cccccceEeccccccccccc---c-cCCCcceEEeccee----
Q 014120 168 NQISE--LPFLEYLALHYCMKLRSINI----------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV---- 227 (430)
Q Consensus 168 ~l~~~--~p~Le~L~L~~c~~l~~l~~----------~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~---- 227 (430)
..+.. +++|+.|+++++.....++. ..++|+.|+++++ .++.+. + ..++|+.+...++.
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 54444 34899999987764433322 2358999999988 666554 2 25888888887665
Q ss_pred eEEeccc--------cccceeEEEeeecCCchHHHHHHHHHH--hhCCCCceEeeeEeeccceecCcccccccCCCCCCc
Q 014120 228 ESFSSNA--------LALSQTLLCFISHPVDNEWYLKFIKLL--ARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYH 297 (430)
Q Consensus 228 ~~~~~~~--------~sL~~v~l~~~~~~~~~~~~~~l~~~l--~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L 297 (430)
|...... ..++.+++.-+... .+...+ ..+.+++.|++..+.... +|..+. .+++|
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~-----~l~~L 538 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-------KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPL-----NSSTL 538 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-------BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGG-----GCSSC
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-------ccChhhhhccCCCcCEEECCCCCCCC--cChhhh-----cCCCC
Confidence 1111111 15555555321111 112223 367788888877665442 454433 24778
Q ss_pred ceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 298 KHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 298 ~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
+.|.+..+...+...+.+.++.-+..+|+|++|.+.
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 888885321000111222223345778888888884
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=9.9e-16 Score=164.79 Aligned_cols=197 Identities=17% Similarity=0.082 Sum_probs=107.1
Q ss_pred CCccccCCCCccEEEEcCccCCC--CC--CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc--cc-
Q 014120 28 LPQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS--LQ- 100 (430)
Q Consensus 28 LP~~l~~~~~L~~L~Ls~~~~~~--~~--~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--l~- 100 (430)
+|+.+..+++|++|+|++|.+.. |. .+.++++|++|+|++|.++......+..++++|++|++++|..-.. ..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 34445555555555555544331 22 4455555555555555442211111123455555555555432110 01
Q ss_pred --cCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120 101 --LLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176 (430)
Q Consensus 101 --l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L 176 (430)
+.++++|++|++++|. .+.... ..+++|++|++++.... ....++++++|++|++++|.+++ .++..+.++++|
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L 249 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTEL 249 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSC
T ss_pred hhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCC
Confidence 3455666777766654 111111 23678888888773222 11237788889999999888853 456677888999
Q ss_pred ceeccccccccccccc-cccccceEecccccccc-ccc---cc-CCCcceEEeccee
Q 014120 177 EYLALHYCMKLRSINI-SSPRLKELVFERCEELV-EFE---LD-TPNLSIFKCFNYV 227 (430)
Q Consensus 177 e~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~-~~~---i~-~p~L~~~~~~~~~ 227 (430)
+.|++++|.....++. ..++|++|++++| .++ .+. .. .++|+.+...++.
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCc
Confidence 9999887764433333 2466777777776 333 222 12 2666666665543
No 5
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=9.5e-15 Score=147.99 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=121.2
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
.+++.+++. .+....+| .+..+++|++|++++|.+.....+.++++|++|++++|.+++.. . +.++++|++|++
T Consensus 46 ~~l~~L~l~--~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQAD--RLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECC--SSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEEC
T ss_pred ccccEEecC--CCCCccCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEEC
Confidence 456666653 34456677 46678999999999987665323788999999999999885432 2 778899999999
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l 169 (430)
++|..-....+.++++|++|++++|. ..+.. ...+++|++|.+.+.... ...+.++++|+.|++++|.+++- + .
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~-~ 194 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTD-LKPLANLTTLERLDISSNKVSDI--S-V 194 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCC-CGGGTTCTTCCEEECCSSCCCCC--G-G
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccC-chhhccCCCCCEEECcCCcCCCC--h-h
Confidence 88753222236677888888888765 22211 112566666666541111 12356666677777766666431 1 2
Q ss_pred hcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEecce
Q 014120 170 ISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY 226 (430)
Q Consensus 170 ~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~ 226 (430)
+..+++|+.|++++|..-...+. ..++|+.|++++| .++.+. -..++|+.+...+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANN 253 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCC
Confidence 45566666666665542221111 1345666666555 333332 12345555554443
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=8.7e-15 Score=142.13 Aligned_cols=270 Identities=14% Similarity=0.104 Sum_probs=185.0
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
.+++++++ +++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+++. .. +..+++|+.|++
T Consensus 66 ~~L~~L~l--~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNL--NGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEEC--CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred CCccEEEc--cCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeEEEC
Confidence 45666665 4455677776 778999999999999876655688999999999999998543 22 789999999999
Q ss_pred eeCCCCCcc-ccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120 91 NNCPGLKSL-QLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (430)
Q Consensus 91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~ 168 (430)
++|..+..+ .+.++++|++|++++|. ..+.. ...+++|++|++++........+..+++|+.|++++|.+++...
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--
Confidence 999765543 35678999999999876 12222 12468999999988433322337788999999999999865222
Q ss_pred HhcCCCccceecccccccccccc-c-cccccceEeccccccccccc--ccCCCcceEEecceeeEEeccccccceeEEEe
Q 014120 169 QISELPFLEYLALHYCMKLRSIN-I-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYVESFSSNALALSQTLLCF 244 (430)
Q Consensus 169 l~~~~p~Le~L~L~~c~~l~~l~-~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~ 244 (430)
+..++.|+.|++++|..- .++ . ..++|+.|++++| .++.+. -..++|+.+...++. +.
T Consensus 217 -~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~---------l~------ 278 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ---------IS------ 278 (347)
T ss_dssp -GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC---------CC------
T ss_pred -hhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc---------cC------
Confidence 678999999999877532 222 2 3678999999998 666543 234666666655442 00
Q ss_pred eecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcC
Q 014120 245 ISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWIT 324 (430)
Q Consensus 245 ~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~c 324 (430)
+. ..+..+.+++.|++..+.... ..+..+ ..+++|+.|.+..++ +.++.+ +..+
T Consensus 279 ----~~--------~~~~~l~~L~~L~L~~n~l~~-~~~~~l-----~~l~~L~~L~L~~n~------l~~~~~--~~~l 332 (347)
T 4fmz_A 279 ----DI--------SVLNNLSQLNSLFLNNNQLGN-EDMEVI-----GGLTNLTTLFLSQNH------ITDIRP--LASL 332 (347)
T ss_dssp ----CC--------GGGGGCTTCSEEECCSSCCCG-GGHHHH-----HTCTTCSEEECCSSS------CCCCGG--GGGC
T ss_pred ----CC--------hhhcCCCCCCEEECcCCcCCC-cChhHh-----hccccCCEEEccCCc------cccccC--hhhh
Confidence 00 124566778877776665432 111111 135778888887764 222222 6788
Q ss_pred CCCceeeEe
Q 014120 325 PHAETLSIE 333 (430)
Q Consensus 325 P~Le~L~i~ 333 (430)
|+|++|.+.
T Consensus 333 ~~L~~L~l~ 341 (347)
T 4fmz_A 333 SKMDSADFA 341 (347)
T ss_dssp TTCSEESSS
T ss_pred hccceeehh
Confidence 888888873
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.8e-15 Score=162.12 Aligned_cols=286 Identities=11% Similarity=0.055 Sum_probs=186.8
Q ss_pred CCcccc--CCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhc-------CCCCccEEEeeeCCC
Q 014120 28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVA-------GCPLIEYININNCPG 95 (430)
Q Consensus 28 LP~~l~--~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~-------~~p~Le~L~L~~c~~ 95 (430)
+|+.+. ++++|++|+|++|.+.. |..+.++++|+.|+|++|. +++..++..+. .+|+|+.|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 999987 89999999999987543 6778999999999999998 77633454333 556999999999864
Q ss_pred CCcc----ccCCCCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCC-ceeccCCCCc-CceEEccCCCCChHHHH
Q 014120 96 LKSL----QLLGLNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLY 167 (430)
Q Consensus 96 l~~l----~l~~~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~-~~~~~~~l~~-L~~L~L~~~~i~~~~l~ 167 (430)
- .+ .+.++++|+.|++++|. +..+. -..++|+.|++++..+. .+..+.++++ |+.|++++|.++ .++
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~--l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNK--VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSC--CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCC--cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCc
Confidence 3 33 35678999999999875 22332 23689999999883332 2345778888 999999999985 455
Q ss_pred HHhcCCC--ccceeccccccccccccc--------cccccceEeccccccccccc---c-cCCCcceEEeccee----eE
Q 014120 168 NQISELP--FLEYLALHYCMKLRSINI--------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----ES 229 (430)
Q Consensus 168 ~l~~~~p--~Le~L~L~~c~~l~~l~~--------~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~----~~ 229 (430)
..+...+ +|+.|+++++.....++. ..++|+.|++++| .++.+. + ..++|+.+...++. |.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 5554443 499999987764332221 1347999999988 666554 2 45788888887764 21
Q ss_pred Eeccc--------cccceeEEEeeecCCchHHHHHHHHHHh--hCCCCceEeeeEeeccceecCcccccccCCCCCCcce
Q 014120 230 FSSNA--------LALSQTLLCFISHPVDNEWYLKFIKLLA--RFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKH 299 (430)
Q Consensus 230 ~~~~~--------~sL~~v~l~~~~~~~~~~~~~~l~~~l~--~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~ 299 (430)
..... +.|+.+++.-+... .+...+. ++.+++.|++..+.... +|..+. .+++|+.
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-------~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~-----~L~~L~~ 780 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-------SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPL-----NSSQLKA 780 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-------CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGG-----GCTTCCE
T ss_pred HHhccccccccccCCccEEECCCCCCc-------cchHHhhhccCCCcCEEEeCCCCCCc--cchhhh-----cCCCCCE
Confidence 11111 15555555321111 1122233 67788888877665442 444332 3477888
Q ss_pred EEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 300 VSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 300 L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
|.+..++..+...+.+.++.-+..+|+|++|.+.
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 8886532000011222224445778888888884
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.55 E-value=2.3e-15 Score=161.91 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=129.1
Q ss_pred cCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEE
Q 014120 33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK 111 (430)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~ 111 (430)
..+++|++|++++|.+.. +..+.++++|++|+|++|.+++. ++..+.++++|++|++++|..........+++|++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 567888888888877654 23478889999999999888654 3566788999999999988643333333678899999
Q ss_pred cCCCc-C-CceEe-EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccc
Q 014120 112 LDSNR-C-GLERV-YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK 186 (430)
Q Consensus 112 l~~c~-~-~l~~l-~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~ 186 (430)
+++|. . .+... .-.+++|++|++++.... .+..+.++++|++|++++|.+++..-...+.++++|+.|++++|..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 98875 1 11111 111488999998873221 2356788899999999999885332234577899999999987764
Q ss_pred ccccccc----ccccceEeccccccccc-cc--c-c--CCCcceEEeccee
Q 014120 187 LRSINIS----SPRLKELVFERCEELVE-FE--L-D--TPNLSIFKCFNYV 227 (430)
Q Consensus 187 l~~l~~~----~~~L~~L~l~~c~~L~~-~~--i-~--~p~L~~~~~~~~~ 227 (430)
...++.. .++|+.|++++| .++. +. + . .++++.+...++.
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCc
Confidence 4344432 237888888877 3331 11 1 1 3566666665554
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=2.1e-15 Score=153.10 Aligned_cols=286 Identities=16% Similarity=0.114 Sum_probs=147.7
Q ss_pred cCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120 21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS 98 (430)
Q Consensus 21 ~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~ 98 (430)
.......+|..+. +++++|+|+++.+.. +..+.++++|++|+|++|.++... +..+.++++|++|+|++|. ++.
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~ 94 (477)
T 2id5_A 19 HRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR-LKL 94 (477)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCS
T ss_pred CCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCc-CCc
Confidence 3344556665542 567777777766543 356677777777777777664321 2345677777777777764 222
Q ss_pred c---ccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120 99 L---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (430)
Q Consensus 99 l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l 169 (430)
+ .+.++++|++|++++|. +..+. -.+++|++|++++..+. ....+.++++|+.|++++|.+++ ..+..
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 171 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEA 171 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHH
T ss_pred cCcccccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhH
Confidence 2 24456777777777654 22221 13567777777663222 12346667777777777777643 12334
Q ss_pred hcCCCccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee----eE-Eecccccc
Q 014120 170 ISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV----ES-FSSNALAL 237 (430)
Q Consensus 170 ~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~----~~-~~~~~~sL 237 (430)
+.++++|+.|+++++.. ..++. ..++|+.|++++|..+..+. +..++|+++...+.. |. .......|
T Consensus 172 l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 56677777777765432 11111 24566667766664443332 333456666555443 10 01122344
Q ss_pred ceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHH
Q 014120 238 SQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLV 317 (430)
Q Consensus 238 ~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~ 317 (430)
+.+++.-+...+.. ...+.++.+++.|++..+.... +.+.. +..+++|+.|.+..+. +..+-
T Consensus 251 ~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~-~~~~~-----~~~l~~L~~L~L~~N~------l~~~~ 312 (477)
T 2id5_A 251 RFLNLSYNPISTIE------GSMLHELLRLQEIQLVGGQLAV-VEPYA-----FRGLNYLRVLNVSGNQ------LTTLE 312 (477)
T ss_dssp CEEECCSSCCCEEC------TTSCTTCTTCCEEECCSSCCSE-ECTTT-----BTTCTTCCEEECCSSC------CSCCC
T ss_pred CeeECCCCcCCccC------hhhccccccCCEEECCCCccce-ECHHH-----hcCcccCCEEECCCCc------CceeC
Confidence 44444211000000 1223455666666655443221 11111 2234566666665542 22222
Q ss_pred HHHHhcCCCCceeeE
Q 014120 318 DCLLWITPHAETLSI 332 (430)
Q Consensus 318 ~~LL~~cP~Le~L~i 332 (430)
+..+..+|+|++|.+
T Consensus 313 ~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 313 ESVFHSVGNLETLIL 327 (477)
T ss_dssp GGGBSCGGGCCEEEC
T ss_pred HhHcCCCcccCEEEc
Confidence 233456667777766
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.54 E-value=4.1e-14 Score=143.32 Aligned_cols=287 Identities=14% Similarity=0.108 Sum_probs=149.2
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
..+++|+| +++....+|+ +.++++|++|+++++.+.....+.++++|++|+|++|.+++.. . +.++++|++|++
T Consensus 68 ~~L~~L~L--s~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINF--SNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEEC--CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEE
T ss_pred cCCCEEEC--CCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEEC
Confidence 45555554 4455666665 7778888888888877655323777888888888888775431 1 677888888888
Q ss_pred eeCCCCCccc---------------------cCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCC
Q 014120 91 NNCPGLKSLQ---------------------LLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSC 148 (430)
Q Consensus 91 ~~c~~l~~l~---------------------l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l 148 (430)
++|..-..-. +.++++|+.|++++|. ..+.. ...+++|++|++++........+..+
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l 220 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGIL 220 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGC
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccccccc
Confidence 8764211112 2334555555555543 11110 01245566666555222211224455
Q ss_pred CcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEecc
Q 014120 149 KNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFN 225 (430)
Q Consensus 149 ~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~ 225 (430)
++|+.|++++|.+++- ..+..+++|+.|++++|..-...+. ..++|+.|++++| .++.+. -..++|+.+...+
T Consensus 221 ~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp TTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCC
Confidence 5666666666655431 1234566666666655442211111 2455666666665 343322 2345666666554
Q ss_pred ee--eEE-eccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEE
Q 014120 226 YV--ESF-SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSF 302 (430)
Q Consensus 226 ~~--~~~-~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l 302 (430)
.. ... ......++.+++..+...+.. . +..+.+++.|++..+.... ++ ....+++|+.|.+
T Consensus 297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~--~~------~l~~l~~L~~L~l 360 (466)
T 1o6v_A 297 NQLEDISPISNLKNLTYLTLYFNNISDIS-------P-VSSLTKLQRLFFYNNKVSD--VS------SLANLTNINWLSA 360 (466)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSCCG-------G-GGGCTTCCEEECCSSCCCC--CG------GGTTCTTCCEEEC
T ss_pred CcccCchhhcCCCCCCEEECcCCcCCCch-------h-hccCccCCEeECCCCccCC--ch------hhccCCCCCEEeC
Confidence 43 000 122334444444221111110 1 3566677766665554321 11 1224567777777
Q ss_pred EEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120 303 SVLSEILEVSLANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 303 ~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i 332 (430)
..+. +.++.+ +..+|+|+.|.+
T Consensus 361 ~~n~------l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 361 GHNQ------ISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp CSSC------CCBCGG--GTTCTTCCEEEC
T ss_pred CCCc------cCccch--hhcCCCCCEEec
Confidence 6653 222223 677888888877
No 11
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=1.3e-14 Score=146.65 Aligned_cols=295 Identities=15% Similarity=0.107 Sum_probs=175.6
Q ss_pred hCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120 10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 10 ~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~ 89 (430)
-..++.+++. ++....+| .+..+++|++|+++++.+... .+.++++|++|+|++|.+++. + +.++++|++|+
T Consensus 41 l~~L~~L~Ls--~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCH--NSSITDMT-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECC--SSCCCCCT-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred cCCCCEEEcc--CCCcccCh-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEE
Confidence 3556666654 34566677 678899999999999887663 378899999999999988653 2 67899999999
Q ss_pred eeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120 90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (430)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~ 168 (430)
+++|. ++.+.+..+++|++|+++.|. +..+.+ .+++|++|++++........+..+++|+.|++++|.+++ ++
T Consensus 113 L~~N~-l~~l~~~~l~~L~~L~l~~N~--l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~- 186 (457)
T 3bz5_A 113 CDTNK-LTKLDVSQNPLLTYLNCARNT--LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD- 186 (457)
T ss_dssp CCSSC-CSCCCCTTCTTCCEEECTTSC--CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC-
T ss_pred CCCCc-CCeecCCCCCcCCEEECCCCc--cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--ec-
Confidence 99874 455567778889999988875 333333 367788888877311123456777888888888887754 33
Q ss_pred HhcCCCccceecccccccccccccc-ccccceEecccccccccccc-cCCCcceEEeccee--eEEeccccccceeEEEe
Q 014120 169 QISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFEL-DTPNLSIFKCFNYV--ESFSSNALALSQTLLCF 244 (430)
Q Consensus 169 l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~i-~~p~L~~~~~~~~~--~~~~~~~~sL~~v~l~~ 244 (430)
+..++.|+.|+++++. +..++.. .++|+.|+++++ .++.+.+ ..++|+++...++. .......+.+..+++..
T Consensus 187 -l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred -cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCC-cccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 5677788888876554 3333332 467777777776 5555543 34666666665543 00011112222221100
Q ss_pred eecC----CchHHHHHHHHHHhhCCCCceEeeeEeeccceecCc---ccccccCCCCCCcceEEEEEEeccchhhHHHHH
Q 014120 245 ISHP----VDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPR---ELREILCPPLTYHKHVSFSVLSEILEVSLANLV 317 (430)
Q Consensus 245 ~~~~----~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~---~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~ 317 (430)
..-. ..+...+.+. ..++++++.|++..+.... .+|. .+..+.+...++|+.|.+..+. +.++
T Consensus 264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~~~L~~L~L~~N~------l~~l- 333 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQNPKLVYLYLNNTE------LTEL- 333 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTCTTCCEEECTTCC------CSCC-
T ss_pred CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc-eeccCCCcceEechhhcccCCEEECCCCc------cccc-
Confidence 0000 0000000000 1345677777766554321 2221 1222223344677777776553 3232
Q ss_pred HHHHhcCCCCceeeEe
Q 014120 318 DCLLWITPHAETLSIE 333 (430)
Q Consensus 318 ~~LL~~cP~Le~L~i~ 333 (430)
+ +..||+|++|.+.
T Consensus 334 ~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 334 D--VSHNTKLKSLSCV 347 (457)
T ss_dssp C--CTTCTTCSEEECC
T ss_pred c--cccCCcCcEEECC
Confidence 2 6788999998883
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=2.6e-15 Score=156.84 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=36.7
Q ss_pred cccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 25 IYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 25 ~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
...+ |..+.++++|++|++++|.+.. +..+.++++|++|+|++|.++...++..++++++|++|++++|
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 3344 4444455555555555554332 2345556666666666665543223444556666666666665
No 13
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=1.6e-14 Score=150.33 Aligned_cols=268 Identities=11% Similarity=0.002 Sum_probs=142.2
Q ss_pred CCCCCCEEEEeeecCC---hHHHHHHhcCCCCccEEEeeeCCCCCc-cccCCCCCcCEEEcCCCcCCce-----EeEeec
Q 014120 56 TLFSLRKLCLSFVHVD---DEVIRDMVAGCPLIEYININNCPGLKS-LQLLGLNKLKEIKLDSNRCGLE-----RVYING 126 (430)
Q Consensus 56 ~l~~L~~L~Ls~~~~~---~~~l~~l~~~~p~Le~L~L~~c~~l~~-l~l~~~~~L~~L~l~~c~~~l~-----~l~i~~ 126 (430)
++++|++|+|++|.++ ...+..++.+||+|+.|++++|..-.. -.+.++++|++|.++.+..... .....+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 3445555555544442 334444455555555555555431100 0112234555555543210000 001124
Q ss_pred cceeEEEeecC-CCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc---cccccccceEec
Q 014120 127 VNVHSVDIKVY-LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI---NISSPRLKELVF 202 (430)
Q Consensus 127 p~L~~L~l~~~-~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~~~~~~L~~L~l 202 (430)
++|+.+.+.+. ....+..+..+++|++|++++|.+++..+..++.++|+|+.|++.++-.-..+ ....++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 56666666541 11122445678899999999999887777778889999999999743221222 223578999999
Q ss_pred cc----------cccccccc-----ccCCCcceEEeccee-e---E--EeccccccceeEEEeee----cCCchHHHHHH
Q 014120 203 ER----------CEELVEFE-----LDTPNLSIFKCFNYV-E---S--FSSNALALSQTLLCFIS----HPVDNEWYLKF 257 (430)
Q Consensus 203 ~~----------c~~L~~~~-----i~~p~L~~~~~~~~~-~---~--~~~~~~sL~~v~l~~~~----~~~~~~~~~~l 257 (430)
.+ |..++... -..|+|+++.+.... . . +....+.++.+++.... ..+. .....+
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~~~~ 428 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLDNGV 428 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHHHHH
Confidence 85 76665432 235888888873322 0 0 01124457777774211 0110 001135
Q ss_pred HHHHhhCCCCceEeeeEeeccc-eecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 258 IKLLARFNLCSNVLNLQCNHEA-VLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 258 ~~~l~~l~~l~~L~L~~~~~~~-~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
..++.++.+++.|++..|.... ......+. ..+++|+.|.+..+. . . ...+..+++.||+|+.|.+.
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----~~~~~L~~L~L~~n~-l--~--~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----QYSPNVRWMLLGYVG-E--S--DEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----HSCTTCCEEEECSCC-S--S--HHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHH----HhCccceEeeccCCC-C--C--HHHHHHHHhcCcccCeeecc
Confidence 5667788889988887655311 11111111 124678888887553 1 1 11335667888888888884
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=3.6e-14 Score=142.85 Aligned_cols=299 Identities=14% Similarity=0.077 Sum_probs=159.2
Q ss_pred CceEEEEEecCCccccC-CccccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 12 NVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
++++|+|.. +....+ |..+.++++|++|+++++.+.. +..+.++++|++|+|++|.++.. .+..+.++++|++
T Consensus 31 ~l~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 107 (455)
T 3v47_A 31 HVNYVDLSL--NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEV 107 (455)
T ss_dssp TCCEEECCS--SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCE
T ss_pred ccCEEEecC--CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCE
Confidence 455555433 334444 4455566777777777665431 34566667777777776665432 1233556666666
Q ss_pred EEeeeCCCCC----ccccCCCCCcCEEEcCCCc-CCceEe--EeeccceeEEEeecCCCC--ceec--------------
Q 014120 88 ININNCPGLK----SLQLLGLNKLKEIKLDSNR-CGLERV--YINGVNVHSVDIKVYLEP--CEVN-------------- 144 (430)
Q Consensus 88 L~L~~c~~l~----~l~l~~~~~L~~L~l~~c~-~~l~~l--~i~~p~L~~L~l~~~~~~--~~~~-------------- 144 (430)
|++++|..-. .-.+.++++|++|++++|. ..+... ...+++|++|++++..+. ....
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 6666654211 1114445666666666554 111111 112455666655541111 0011
Q ss_pred --------------------cCCCCcCceEEccCCCCChHHHHHHhc--CCCccceecccccccccc---------c---
Q 014120 145 --------------------VSSCKNLTHLRLDGLSITDKWLYNQIS--ELPFLEYLALHYCMKLRS---------I--- 190 (430)
Q Consensus 145 --------------------~~~l~~L~~L~L~~~~i~~~~l~~l~~--~~p~Le~L~L~~c~~l~~---------l--- 190 (430)
+..+++|+.|++++|.+++.....+.. ..+.|+.|+++++..... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 123456777888877776533222221 236677777765532211 0
Q ss_pred c---ccccccceEeccccccccccc----ccCCCcceEEeccee-e-E---EeccccccceeEEEeeecCCchHHHHHHH
Q 014120 191 N---ISSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-E-S---FSSNALALSQTLLCFISHPVDNEWYLKFI 258 (430)
Q Consensus 191 ~---~~~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~~-~-~---~~~~~~sL~~v~l~~~~~~~~~~~~~~l~ 258 (430)
. ...++|+.|+++++ .++.+. -..++|+.+...+.. . . .......++.+++.-+...+. ..
T Consensus 268 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~ 340 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DS 340 (455)
T ss_dssp TTGGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CG
T ss_pred ccccccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------Ch
Confidence 0 01257888888887 454332 245788888877665 1 1 112344566666532111111 12
Q ss_pred HHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120 259 KLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 259 ~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i 332 (430)
..+.++.+++.|++..+.... ..+.. ...+++|++|.+..+. +.++.+..+..+|+|++|.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~-----~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRA-LGDQS-----FLGLPNLKELALDTNQ------LKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCE-ECTTT-----TTTCTTCCEEECCSSC------CSCCCTTTTTTCTTCCEEEC
T ss_pred hHhcCcccCCEEECCCCcccc-cChhh-----ccccccccEEECCCCc------cccCCHhHhccCCcccEEEc
Confidence 345778899988887765432 22322 2346889999998763 22232345688999999999
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=155.35 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=117.2
Q ss_pred ecCCccccC-CccccCCCCccEEEEcCccCCC--CC--CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 20 VGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 20 ~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~--~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
++++....+ |..+.++++|++|+|++|.+.. +. .+.++++|++|+|++|.++.......++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 333444444 6666677888888888876543 22 377888888888888877543333456788888888888763
Q ss_pred C---------------CCccccC-------------CCC------CcCEEEcCCCc-C--------------CceEeEee
Q 014120 95 G---------------LKSLQLL-------------GLN------KLKEIKLDSNR-C--------------GLERVYIN 125 (430)
Q Consensus 95 ~---------------l~~l~l~-------------~~~------~L~~L~l~~c~-~--------------~l~~l~i~ 125 (430)
. ++.+.++ .++ .|+.|++++|. . .+..+.+.
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 2 2222211 112 27777777662 0 01111111
Q ss_pred -------------------------ccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120 126 -------------------------GVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178 (430)
Q Consensus 126 -------------------------~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~ 178 (430)
.++|+.|++++.... ....+..+++|+.|+|++|.+++ ..+..+.++++|+.
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQV 318 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCE
Confidence 256777777663222 13446777888888888887743 12334567788888
Q ss_pred eccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120 179 LALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY 226 (430)
Q Consensus 179 L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~ 226 (430)
|+++++..-...+. ..++|+.|+++++ .++.+. + ..++|+.+...++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 88876542111111 2456777777766 444332 1 2456666665544
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=7e-15 Score=153.63 Aligned_cols=141 Identities=15% Similarity=0.126 Sum_probs=76.8
Q ss_pred ecCCccccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120 20 VGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG- 95 (430)
Q Consensus 20 ~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~- 95 (430)
++++....+ |..+.++++|++|+|++|.+.. |..+.++++|++|+|++|.++.. .+..+.++++|++|++++|..
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCS
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcc
Confidence 333444455 3455567777777777765432 45567777777777777766432 123456677777777776642
Q ss_pred -CCccccCCCCCcCEEEcCCCc-CCce-EeEeeccceeEEEeecCCCC--ceeccCCCCcCc--eEEccCCCC
Q 014120 96 -LKSLQLLGLNKLKEIKLDSNR-CGLE-RVYINGVNVHSVDIKVYLEP--CEVNVSSCKNLT--HLRLDGLSI 161 (430)
Q Consensus 96 -l~~l~l~~~~~L~~L~l~~c~-~~l~-~l~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~--~L~L~~~~i 161 (430)
+....+.++++|++|++++|. ..+. +....+++|++|++++..+. .+..++++++|+ .|++++|.+
T Consensus 119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 222345556677777777654 1111 11122566666666662222 122344555555 555555554
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.49 E-value=6.1e-15 Score=149.68 Aligned_cols=277 Identities=15% Similarity=0.097 Sum_probs=189.2
Q ss_pred CCceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..++.|+ ++++....++ ..+.++++|++|+|+++.+.. |..+.++++|++|+|++|.++... ...+.++++|++
T Consensus 32 ~~l~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLD--LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEE--CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCE
T ss_pred CCCcEEE--CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCE
Confidence 3555555 4445566665 467779999999999987654 578899999999999999885421 234678999999
Q ss_pred EEeeeCCCC--CccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCC
Q 014120 88 ININNCPGL--KSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGL 159 (430)
Q Consensus 88 L~L~~c~~l--~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~ 159 (430)
|+|++|..- ..-.+.++++|++|+++++. +..+. ..+++|++|++++.... ....+.++++|+.|++++|
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 999998542 22245678999999999874 33332 23689999999983332 1234788999999999999
Q ss_pred CCChHHHHHHhcCCCccceecccccccccccccc---ccccceEeccccccccccc----ccCCCcceEEeccee-eEE-
Q 014120 160 SITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-ESF- 230 (430)
Q Consensus 160 ~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~~-~~~- 230 (430)
.+.. ..+..+..+++|+.|++++|..+..++.. ..+|+.|++++| .++.+. -..++|+.+...++. ...
T Consensus 187 ~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 187 NINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred cCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccC
Confidence 8854 12235678999999999998877666543 358999999998 666554 245889999887765 111
Q ss_pred ---eccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEe
Q 014120 231 ---SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS 306 (430)
Q Consensus 231 ---~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~ 306 (430)
......++.+++.-+...+. ....+.++.+++.|++..+... .++... +..+++|+.|.+..++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~--~~~~~~----~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVV------EPYAFRGLNYLRVLNVSGNQLT--TLEESV----FHSVGNLETLILDSNP 331 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEE------CTTTBTTCTTCCEEECCSSCCS--CCCGGG----BSCGGGCCEEECCSSC
T ss_pred hhhccccccCCEEECCCCccceE------CHHHhcCcccCCEEECCCCcCc--eeCHhH----cCCCcccCEEEccCCC
Confidence 12344566666532111100 0123467788998888766543 233321 2245789999988775
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=4.7e-14 Score=147.35 Aligned_cols=274 Identities=16% Similarity=0.146 Sum_probs=162.9
Q ss_pred EEEecCCccccCCcc-ccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 17 KLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 17 ~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
.|++..+....+|+. +..+++|++|+++++.+.. |..+.++++|++|++++|.++... +..+.++++|++|++++|.
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCC
Confidence 355555566667665 5558888888888877654 566788888888888888875431 3456778888888888875
Q ss_pred CCCc---cccCCCCCcCEEEcCCCcCCceEeE------eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCCh
Q 014120 95 GLKS---LQLLGLNKLKEIKLDSNRCGLERVY------INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITD 163 (430)
Q Consensus 95 ~l~~---l~l~~~~~L~~L~l~~c~~~l~~l~------i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~ 163 (430)
.... -.+.++++|++|++++|. +..+. ..+++|++|++++.... .+..+.++++|+.|++++|.+++
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred cccccchhhhhccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 4322 235567888888888764 33332 13577788877763221 12456677788888888777643
Q ss_pred HHHHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc-------ccCCCcceEEecceeeEEecc
Q 014120 164 KWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE-------LDTPNLSIFKCFNYVESFSSN 233 (430)
Q Consensus 164 ~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~-------i~~p~L~~~~~~~~~~~~~~~ 233 (430)
...+..+.+++.|+.|++++|..-...+. ..++|+.|++++| .++... -..++|+.+...+..
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~------ 487 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD------ 487 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC------
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc------
Confidence 32233456777888888876653222221 2567778887777 443311 123455555544432
Q ss_pred ccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhH
Q 014120 234 ALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSL 313 (430)
Q Consensus 234 ~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~ 313 (430)
+.. + . ...+.++.+++.|++..+.... ..+.. +..+.+| +|.+..+. +
T Consensus 488 ---l~~----~----~--------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-----l~~l~~L-~L~L~~N~------l 535 (606)
T 3t6q_A 488 ---LSS----I----D--------QHAFTSLKMMNHVDLSHNRLTS-SSIEA-----LSHLKGI-YLNLASNH------I 535 (606)
T ss_dssp ---CCE----E----C--------TTTTTTCTTCCEEECCSSCCCG-GGGGG-----GTTCCSC-EEECCSSC------C
T ss_pred ---cCc----c----C--------hhhhccccCCCEEECCCCccCc-CChhH-----hCccccc-EEECcCCc------c
Confidence 000 0 0 1224567778877776654332 22222 2234555 56655542 2
Q ss_pred HHHHHHHHhcCCCCceeeE
Q 014120 314 ANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 314 ~~i~~~LL~~cP~Le~L~i 332 (430)
.++.+..+..+|+|++|.+
T Consensus 536 ~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINL 554 (606)
T ss_dssp CCCCGGGHHHHHTSSEEEC
T ss_pred cccCHhhcccCCCCCEEeC
Confidence 2232344566678899888
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=2.7e-14 Score=141.06 Aligned_cols=202 Identities=16% Similarity=0.197 Sum_probs=118.4
Q ss_pred CCceEEEEEecCCccccCCcccc-CCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~-~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.+++.+++.- +....+|..++ .+++|++|+++++.+.. +..+.++++|++|+|++|.++... +..+.++++|++
T Consensus 45 ~~l~~l~l~~--~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEES--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCceEEEecC--CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCCE
Confidence 3455555433 45667776644 47888888888876543 356778888888888888774321 234567888888
Q ss_pred EEeeeCCCCCccc---cCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCCceeccCCCCcCceEEccCCC
Q 014120 88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS 160 (430)
Q Consensus 88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 160 (430)
|++++|. ++.+. +.++++|++|++++|. +..+. -..++|++|++++.... ...+..+++|+.|++++|.
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEECCSSC
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCc--cCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeeccccc
Confidence 8888764 23322 3556788888888764 22221 13567777777763322 2345556677777777666
Q ss_pred CChHHHHHHhcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEeccee
Q 014120 161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYV 227 (430)
Q Consensus 161 i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~ 227 (430)
++. +...+.|+.|+++++.. ..++. ..++|+.|+++++ .++... -..|+|+.+...+..
T Consensus 198 l~~------~~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 198 LST------LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp CSE------EECCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccc------cCCCCcceEEECCCCee-eeccccccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc
Confidence 643 12345566666654432 22222 2345666666665 444332 234566666655543
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=1e-14 Score=150.43 Aligned_cols=58 Identities=7% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120 261 LARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 261 l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i 332 (430)
..++.+++.|++..+... .+|.. . .+++|+.|.+..+. +.++.+..+..+++|+.|.+
T Consensus 447 ~~~l~~L~~L~Ls~N~l~--~ip~~-~-----~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 447 SLFLPRLQELYISRNKLK--TLPDA-S-----LFPVLLVMKISRNQ------LKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp CCCCTTCCEEECCSSCCS--SCCCG-G-----GCTTCCEEECCSSC------CCCCCTTGGGGCTTCCEEEC
T ss_pred cccCChhcEEECCCCccC--cCCCc-c-----cCccCCEEecCCCc------cCCcCHHHHhcCcccCEEEe
Confidence 356778888887766543 44432 1 24788888887763 22333444688999999998
No 21
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=8.1e-14 Score=134.54 Aligned_cols=218 Identities=16% Similarity=0.247 Sum_probs=154.1
Q ss_pred hHHHHHHhC-CceEEEEEecCCccccCCccccCC--CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHH
Q 014120 3 RCLSYAFAS-NVKELKLDVGCCRIYNLPQIVFYL--KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDM 78 (430)
Q Consensus 3 ~wi~~a~~~-~v~~L~L~~~~~~~~~LP~~l~~~--~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l 78 (430)
+|-+.+... ..+.+++ +.+... |..+... ++++.|+++++.+.. +..+.++++|++|+|++|.+++..++..
T Consensus 38 ~W~~~~~~~~~~~~l~l--~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 38 RWYRLASDESLWQTLDL--TGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp HHHHHHTCSTTSSEEEC--TTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHHHhcCchhheeecc--ccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 576665432 3555554 332221 4445555 899999999986554 3446689999999999999988878889
Q ss_pred hcCCCCccEEEeeeCCCCCc---cccCCCCCcCEEEcCCCcCCceE-----eEeeccceeEEEeecC-CCC---ceeccC
Q 014120 79 VAGCPLIEYININNCPGLKS---LQLLGLNKLKEIKLDSNRCGLER-----VYINGVNVHSVDIKVY-LEP---CEVNVS 146 (430)
Q Consensus 79 ~~~~p~Le~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~l~~-----l~i~~p~L~~L~l~~~-~~~---~~~~~~ 146 (430)
+..|++|++|++++|. +.. -.+..+++|++|++++|. .+.. +.-.+++|++|++++. .+. ....+.
T Consensus 114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 9999999999999985 332 135568999999999985 3432 1224788999998874 433 123356
Q ss_pred CCC-cCceEEccCC--CCChHHHHHHhcCCCccceecccccccccc--ccc--cccccceEeccccccccccc----ccC
Q 014120 147 SCK-NLTHLRLDGL--SITDKWLYNQISELPFLEYLALHYCMKLRS--INI--SSPRLKELVFERCEELVEFE----LDT 215 (430)
Q Consensus 147 ~l~-~L~~L~L~~~--~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~--l~~--~~~~L~~L~l~~c~~L~~~~----i~~ 215 (430)
.++ +|++|++++| .+++..++..+.++|+|+.|++++|..+.. +.. ..++|+.|++++|..+.... -..
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 788 9999999998 677778888888899999999998875432 111 25789999999986554331 235
Q ss_pred CCcceEEecce
Q 014120 216 PNLSIFKCFNY 226 (430)
Q Consensus 216 p~L~~~~~~~~ 226 (430)
|+|+.+...|.
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 67777766654
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=3.9e-14 Score=148.03 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=93.6
Q ss_pred ecCCccccCCccccC-CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120 20 VGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (430)
Q Consensus 20 ~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l 96 (430)
+.++....+|+.++. +++|++|+|+++.+.. +..+.++++|++|+|++|.++.. .+..++++++|++|+|++|. +
T Consensus 58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l 135 (597)
T 3oja_B 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERND-L 135 (597)
T ss_dssp ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-C
T ss_pred eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCC-C
Confidence 333456667766544 7888888888876543 34677888888888888877442 13345678888888888764 2
Q ss_pred Cccc---cCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120 97 KSLQ---LLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (430)
Q Consensus 97 ~~l~---l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l 169 (430)
+.+. +.++++|++|++++|. +..+. -.+++|++|++++..+. ...+..+++|+.|++++|.++.
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~L~l~~n~l~~------ 206 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST------ 206 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECTTSCCS-BCCGGGCTTCSEEECCSSCCSE------
T ss_pred CCCCHHHhccCCCCCEEEeeCCc--CCCCChhhhhcCCcCcEEECcCCCCC-CcChhhhhhhhhhhcccCcccc------
Confidence 2222 4556788888887764 22221 13567777777763322 2344556666666666666533
Q ss_pred hcCCCccceeccccc
Q 014120 170 ISELPFLEYLALHYC 184 (430)
Q Consensus 170 ~~~~p~Le~L~L~~c 184 (430)
+...+.|+.|+++++
T Consensus 207 l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 207 LAIPIAVEELDASHN 221 (597)
T ss_dssp EECCTTCSEEECCSS
T ss_pred ccCCchhheeeccCC
Confidence 123345555555543
No 23
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=8.2e-14 Score=144.90 Aligned_cols=289 Identities=14% Similarity=0.094 Sum_probs=165.0
Q ss_pred CCCCccEEEEcCccCCC--CCCCC-CCCCCCEEEEeee-cCChHHHHHHhcCCCCccEEEeeeCCC----CCccc--cCC
Q 014120 34 YLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFV-HVDDEVIRDMVAGCPLIEYININNCPG----LKSLQ--LLG 103 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--~~~~~-~l~~L~~L~Ls~~-~~~~~~l~~l~~~~p~Le~L~L~~c~~----l~~l~--l~~ 103 (430)
.+++|++|+|++|.+.. +..+. ++++|++|+|++| .+++..+..+..+||+|++|++++|.. ...+. ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47788888888876543 12222 5788999999888 567777778888888999998887751 11110 113
Q ss_pred CCCcCEEEcCCCcC-----CceEeEeeccceeEEEeecC-----------------------------------------
Q 014120 104 LNKLKEIKLDSNRC-----GLERVYINGVNVHSVDIKVY----------------------------------------- 137 (430)
Q Consensus 104 ~~~L~~L~l~~c~~-----~l~~l~i~~p~L~~L~l~~~----------------------------------------- 137 (430)
+++|++|+++.|.. .+..+...+++|++|++++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 45666666665530 01111112344444444321
Q ss_pred -------------CCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc---cccccccce
Q 014120 138 -------------LEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI---NISSPRLKE 199 (430)
Q Consensus 138 -------------~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~~~~~~L~~ 199 (430)
... ....+..+++|+.|++++|.+++..+..++.++|+|+.|++.+|-.-..+ ....++|+.
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 000 00011256899999999999988888888899999999999987321112 223678999
Q ss_pred Eeccc--------cccccccc-----ccCCCcceEEeccee-e---E--EeccccccceeEEEeee-----cCCchHHHH
Q 014120 200 LVFER--------CEELVEFE-----LDTPNLSIFKCFNYV-E---S--FSSNALALSQTLLCFIS-----HPVDNEWYL 255 (430)
Q Consensus 200 L~l~~--------c~~L~~~~-----i~~p~L~~~~~~~~~-~---~--~~~~~~sL~~v~l~~~~-----~~~~~~~~~ 255 (430)
|++.+ |..+++.. -..|+|+++...+.. . . .....+.++.+++.+.. .-.......
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 99843 44444322 236888888553332 0 0 11124567777776321 001000012
Q ss_pred HHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 256 KFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 256 ~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
.+..++.++.+++.|++.. ......+ ..+.. .+++|+.|.+..+. . . ...+..+.+.||+|++|.+.
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~-~~l~~----~~~~L~~L~L~~~~-i--~--~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVF-EYIGT----YAKKMEMLSVAFAG-D--S--DLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHH-HHHHH----HCTTCCEEEEESCC-S--S--HHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHH-HHHHH----hchhccEeeccCCC-C--c--HHHHHHHHhcCCCcCEEECc
Confidence 4566677888888887743 1111111 11111 24678888886653 1 1 12234555778888888884
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=6.4e-14 Score=151.45 Aligned_cols=291 Identities=14% Similarity=0.051 Sum_probs=190.1
Q ss_pred ccccCCccccCCCCccEEEEcCccCCC-------------------CCCCC--CCCCCCEEEEeeecCChHHHHHHhcCC
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP-------------------PRSTV--TLFSLRKLCLSFVHVDDEVIRDMVAGC 82 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~-------------------~~~~~--~l~~L~~L~Ls~~~~~~~~l~~l~~~~ 82 (430)
....+|+.+.++++|++|+|+++.+.. |..+. ++++|++|+|++|.+... ++..+.++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCC
Confidence 444489999999999999999986543 55655 999999999999987543 35668899
Q ss_pred CCccEEEeeeCCCCCc--c---------ccCCCCCcCEEEcCCCcCCceEeEe-----eccceeEEEeecCCCCceeccC
Q 014120 83 PLIEYININNCPGLKS--L---------QLLGLNKLKEIKLDSNRCGLERVYI-----NGVNVHSVDIKVYLEPCEVNVS 146 (430)
Q Consensus 83 p~Le~L~L~~c~~l~~--l---------~l~~~~~L~~L~l~~c~~~l~~l~i-----~~p~L~~L~l~~~~~~~~~~~~ 146 (430)
++|+.|+|++|..++. + .+..+++|+.|++++|. +..+.. ..++|+.|++++..+.....+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCChhhhhcCCCCCEEECCCCCcccchhhc
Confidence 9999999999874443 1 23345799999999875 333322 4689999999883332112788
Q ss_pred CCCcCceEEccCCCCChHHHHHHhcCCCc-cceecccccccccccccc-----ccccceEecccccccccc----c----
Q 014120 147 SCKNLTHLRLDGLSITDKWLYNQISELPF-LEYLALHYCMKLRSINIS-----SPRLKELVFERCEELVEF----E---- 212 (430)
Q Consensus 147 ~l~~L~~L~L~~~~i~~~~l~~l~~~~p~-Le~L~L~~c~~l~~l~~~-----~~~L~~L~l~~c~~L~~~----~---- 212 (430)
.+++|+.|++++|.++ .++..+.+++. |+.|+++++. +..++.. .++|+.|++++| .++.. .
T Consensus 593 ~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMD 668 (876)
T ss_dssp TTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTT
T ss_pred CCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC-cCCCccccchhhhc
Confidence 8999999999999985 56666778888 9999998776 4455542 234999999988 44321 1
Q ss_pred -ccCCCcceEEeccee----eEEe-ccccccceeEEEeeecCCchH-HHHHHHHHHhhCCCCceEeeeEeeccceecCcc
Q 014120 213 -LDTPNLSIFKCFNYV----ESFS-SNALALSQTLLCFISHPVDNE-WYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRE 285 (430)
Q Consensus 213 -i~~p~L~~~~~~~~~----~~~~-~~~~sL~~v~l~~~~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~ 285 (430)
+..++|+.+...++. |... ...+.++.+++.-+....... .+........++.+++.|++..+... .+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHH
Confidence 234578888877664 2111 133456666653211110000 00000000123337887777766543 44443
Q ss_pred cccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 286 LREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 286 l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
.. ...+++|+.|.+..+. +.++ +.-+..+|+|+.|.+.
T Consensus 747 l~---~~~l~~L~~L~Ls~N~------L~~l-p~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 747 FR---ATTLPYLSNMDVSYNC------FSSF-PTQPLNSSQLKAFGIR 784 (876)
T ss_dssp GS---TTTCTTCCEEECCSSC------CSSC-CCGGGGCTTCCEEECC
T ss_pred hh---hccCCCcCEEEeCCCC------CCcc-chhhhcCCCCCEEECC
Confidence 22 1145788888887763 2222 3335688999999884
No 25
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=4.2e-14 Score=142.57 Aligned_cols=317 Identities=15% Similarity=0.109 Sum_probs=199.2
Q ss_pred HHHhCCceEEEEEecCC---ccccCCccccCCCCccEEEEcCccCCC--C-CCCCCCC----CCCEEEEeeecCCh---H
Q 014120 7 YAFASNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLEP--P-RSTVTLF----SLRKLCLSFVHVDD---E 73 (430)
Q Consensus 7 ~a~~~~v~~L~L~~~~~---~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~-~~~~~l~----~L~~L~Ls~~~~~~---~ 73 (430)
+..-.+++.++|..+.- ....+|..+..+++|++|+|+++.+.. + .....++ +|++|+|++|.+++ .
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 34456788888765431 122567777778999999999986543 1 1122344 79999999998865 3
Q ss_pred HHHHHhcCCCCccEEEeeeCCCCCccc--------cCCCCCcCEEEcCCCcCCceEe--------EeeccceeEEEeecC
Q 014120 74 VIRDMVAGCPLIEYININNCPGLKSLQ--------LLGLNKLKEIKLDSNRCGLERV--------YINGVNVHSVDIKVY 137 (430)
Q Consensus 74 ~l~~l~~~~p~Le~L~L~~c~~l~~l~--------l~~~~~L~~L~l~~c~~~l~~l--------~i~~p~L~~L~l~~~ 137 (430)
.+...+..+++|++|++++|. +.... ....++|++|++++|. +... --.+++|++|++++.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 566778889999999999876 32211 1224579999998875 2211 112589999999883
Q ss_pred CCC--ceeccC-----CCCcCceEEccCCCCChHH---HHHHhcCCCccceecccccccccc-----cc----ccccccc
Q 014120 138 LEP--CEVNVS-----SCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLRS-----IN----ISSPRLK 198 (430)
Q Consensus 138 ~~~--~~~~~~-----~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~~l~~-----l~----~~~~~L~ 198 (430)
.+. ....+. ..++|+.|++++|.+++.. ++..+..+++|+.|++++|. +.. +. ...++|+
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCC
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCce
Confidence 322 011111 3568999999999997643 56667789999999998774 221 11 1257899
Q ss_pred eEecccccccccc-----c---ccCCCcceEEeccee-e-----EEe----ccccccceeEEEeeecCCchHHHHHHHHH
Q 014120 199 ELVFERCEELVEF-----E---LDTPNLSIFKCFNYV-E-----SFS----SNALALSQTLLCFISHPVDNEWYLKFIKL 260 (430)
Q Consensus 199 ~L~l~~c~~L~~~-----~---i~~p~L~~~~~~~~~-~-----~~~----~~~~sL~~v~l~~~~~~~~~~~~~~l~~~ 260 (430)
+|++++| .++.. . -..++|+.+...++. . .+. .....++.+++.-... .......+...
T Consensus 260 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--~~~~~~~l~~~ 336 (461)
T 1z7x_W 260 TLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAACCSHFSSV 336 (461)
T ss_dssp EEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC--BGGGHHHHHHH
T ss_pred EEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC--chHHHHHHHHH
Confidence 9999998 66642 1 135889999887764 0 000 0113566666532111 11111356777
Q ss_pred HhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 261 LARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 261 l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
+....+++.|++..+....... ..+......+.++|++|.+..+. ..... ...++..+..+|+|++|.+.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~~-~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGV-RELCQGLGQPGSVLRVLWLADCD-VSDSS-CSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSC-CCHHH-HHHHHHHHHHCCCCCEEECC
T ss_pred HhhCCCccEEEccCCccccccH-HHHHHHHcCCCCceEEEECCCCC-CChhh-HHHHHHHHHhCCCccEEECC
Confidence 8888999999987765432211 11111111124789999998774 22222 23446677889999999994
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=1.4e-14 Score=152.54 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=118.7
Q ss_pred CCCCCCCCCCCEEEEeeecCChH----------------HHHHHhc--CCCCccEEEeeeCCCCCcc--ccCCCCCcCEE
Q 014120 51 PRSTVTLFSLRKLCLSFVHVDDE----------------VIRDMVA--GCPLIEYININNCPGLKSL--QLLGLNKLKEI 110 (430)
Q Consensus 51 ~~~~~~l~~L~~L~Ls~~~~~~~----------------~l~~l~~--~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L 110 (430)
|..+.++++|++|+|++|.+++. .++..+. ++++|++|++++|.....+ .+.++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 34577899999999999998762 1455666 8999999999998754433 35678999999
Q ss_pred EcCCCcCCceE--eE--ee-------ccceeEEEeecCCCC-cee--ccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120 111 KLDSNRCGLER--VY--IN-------GVNVHSVDIKVYLEP-CEV--NVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176 (430)
Q Consensus 111 ~l~~c~~~l~~--l~--i~-------~p~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L 176 (430)
++++|. .+.. +. +. +++|++|++++.... .+. .++++++|+.|++++|.+++ .++ .+.++++|
T Consensus 279 ~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-~~~~l~~L 355 (636)
T 4eco_A 279 NVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-AFGSEIKL 355 (636)
T ss_dssp ECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-CCEEEEEE
T ss_pred ECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-hhCCCCCC
Confidence 999874 2432 21 11 389999999883322 234 67889999999999998852 344 56778889
Q ss_pred ceecccccccccccccc---ccc-cceEeccccccccccc--cc---CCCcceEEeccee
Q 014120 177 EYLALHYCMKLRSINIS---SPR-LKELVFERCEELVEFE--LD---TPNLSIFKCFNYV 227 (430)
Q Consensus 177 e~L~L~~c~~l~~l~~~---~~~-L~~L~l~~c~~L~~~~--i~---~p~L~~~~~~~~~ 227 (430)
+.|+++++.. ..++.. .++ |+.|+++++ .++.+. +. .++|+.+.+.++.
T Consensus 356 ~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 356 ASLNLAYNQI-TEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp SEEECCSSEE-EECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CEEECCCCcc-ccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCc
Confidence 9999876643 344432 345 888888887 455443 22 2356777665543
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.45 E-value=8.1e-13 Score=130.44 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=81.9
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..+++|+| .++....+|+ .+..+++|++|+++++.+.. |..+.++++|++|+|++|.++.- ...++.++++|++
T Consensus 69 ~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred ccCcEEEC--CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcE
Confidence 45666665 4455666665 56679999999999987654 45678899999999999988532 1234578899999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeec
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKV 136 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~ 136 (430)
|++++|.. +..-.+.++++|++|++++|. +..+.+ ..++|+.+++++
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCS
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeeccc
Confidence 99998753 222235567888999888764 222222 245566665555
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=1e-13 Score=134.04 Aligned_cols=186 Identities=20% Similarity=0.290 Sum_probs=141.1
Q ss_pred CCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEEE
Q 014120 35 LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIK 111 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~ 111 (430)
..+++.|+|+++.+.. |..+.++++|++|+|++|.++ .++..+.++++|++|++++|.. +.+ .+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEE
Confidence 4789999999987654 567788999999999999986 3455678899999999999853 233 356789999999
Q ss_pred cCCCcCCceEeE------------eeccceeEEEeecCCC-CceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120 112 LDSNRCGLERVY------------INGVNVHSVDIKVYLE-PCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178 (430)
Q Consensus 112 l~~c~~~l~~l~------------i~~p~L~~L~l~~~~~-~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~ 178 (430)
+++|. ....+. -..++|++|++++..+ ..+..+.++++|+.|++++|.+++ ++..+.++++|+.
T Consensus 157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCE
T ss_pred CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCE
Confidence 99886 333221 1378999999988322 223568889999999999999853 4445788999999
Q ss_pred ecccccccccccccc---ccccceEeccccccccccc---ccCCCcceEEecce
Q 014120 179 LALHYCMKLRSINIS---SPRLKELVFERCEELVEFE---LDTPNLSIFKCFNY 226 (430)
Q Consensus 179 L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~ 226 (430)
|++++|.....++.. .++|+.|++++|..+..+. -..++|+.+...++
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 999998877766653 5789999999986555443 24567777766654
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.44 E-value=3.7e-13 Score=135.67 Aligned_cols=199 Identities=17% Similarity=0.066 Sum_probs=115.0
Q ss_pred ecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--
Q 014120 20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-- 95 (430)
Q Consensus 20 ~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-- 95 (430)
........+|..+. +++++|+|+++.+.. +..+.++++|++|+|++|.++... ...+.++++|++|+|++|..
T Consensus 61 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 61 CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSB
T ss_pred ECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCc
Confidence 33344556665543 577778887766543 456777788888888877764321 23456777788888777642
Q ss_pred CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeec-CCCC--ceeccCCCCcCceEEccCCCCChHHHHH
Q 014120 96 LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKV-YLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (430)
Q Consensus 96 l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~-~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~ 168 (430)
+..-.+.++++|++|++++|. +..+.. ..++|+.|++++ .... ....+.++++|+.|++++|.+++ ++
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~- 212 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP- 212 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-
T ss_pred cChhhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-
Confidence 222224456777777777653 333321 356777777765 2221 12245667777777777777643 22
Q ss_pred HhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee
Q 014120 169 QISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV 227 (430)
Q Consensus 169 l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~ 227 (430)
.+..+++|+.|+++++..-...+. ..++|+.|+++++ .++.+. + ..++|+.+...++.
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc
Confidence 245667777777765542221111 2456777777766 454432 1 34667777666554
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=2.5e-13 Score=147.56 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=91.4
Q ss_pred EEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 16 L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
...+.+......+|. -.+++++|+|+++.+.. +..+.++++|++|+|++|......-+..+.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 344555555666665 34677777777765543 4566777777777777774321111234567777777777776
Q ss_pred CC--CCccccCCCCCcCEEEcCCCc-CC--ceEe-EeeccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCCh-
Q 014120 94 PG--LKSLQLLGLNKLKEIKLDSNR-CG--LERV-YINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITD- 163 (430)
Q Consensus 94 ~~--l~~l~l~~~~~L~~L~l~~c~-~~--l~~l-~i~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~- 163 (430)
.. +..-.+.++++|++|+++.|. .. +... .-..++|++|++++.... ....++++++|++|++++|.+++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 42 112234566777777777764 11 1110 123567777777763221 12346677777777777776643
Q ss_pred --HHHHHHhcCCCccceeccccc
Q 014120 164 --KWLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 164 --~~l~~l~~~~p~Le~L~L~~c 184 (430)
..+..+.. ++|+.|+++++
T Consensus 164 ~~~~l~~l~~--~~L~~L~L~~n 184 (844)
T 3j0a_A 164 CEHELEPLQG--KTLSFFSLAAN 184 (844)
T ss_dssp CSGGGHHHHH--CSSCCCEECCS
T ss_pred CHHHcccccC--CccceEECCCC
Confidence 22222211 45555555544
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=6.5e-13 Score=134.19 Aligned_cols=178 Identities=19% Similarity=0.201 Sum_probs=112.7
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
..++.|+|. .+....+| +..+++|++|+++++.+... .+.++++|++|++++|.+++- + +..+++|++|++
T Consensus 64 ~~L~~L~Ls--~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICT--SNNITTLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECC--SSCCSCCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEcc--CCcCCeEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 455665554 34455565 66788999999998876653 377888999999998887553 2 678888888888
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l 169 (430)
++|. ++.+.+.++++|+.|+++.|. .+..+.+ ..++|++|++++.... ...+..+++|+.|++++|.+++. -
T Consensus 135 ~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~-~l~l~~l~~L~~L~l~~N~l~~~----~ 207 (457)
T 3bz5_A 135 ARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKIT-ELDVSQNKLLNRLNCDTNNITKL----D 207 (457)
T ss_dssp TTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCC-CCCCTTCTTCCEEECCSSCCSCC----C
T ss_pred CCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccc-eeccccCCCCCEEECcCCcCCee----c
Confidence 8764 444556677788888887774 3333322 2466777777663322 12355666677777766666432 1
Q ss_pred hcCCCccceecccccccccccccc-ccccceEecccc
Q 014120 170 ISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERC 205 (430)
Q Consensus 170 ~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c 205 (430)
+..++.|+.|+++++. +..++.. .++|+.|+++++
T Consensus 208 l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSS
T ss_pred cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCC
Confidence 4556666666665543 2333332 355666666555
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.43 E-value=3.7e-13 Score=129.81 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=121.1
Q ss_pred CccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ 100 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~ 100 (430)
.....+|..+. +++++|+++++.+.. +..+.++++|++|+|++|.++... +..+.++++|++|++++|. ++.+.
T Consensus 41 ~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~l~ 116 (330)
T 1xku_A 41 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ-LKELP 116 (330)
T ss_dssp SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-CSBCC
T ss_pred CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCc-CCccC
Confidence 34445554432 456666666655433 234566666666666666553221 2234556666666666653 33332
Q ss_pred cCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH-HHHHHhcCCCcccee
Q 014120 101 LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK-WLYNQISELPFLEYL 179 (430)
Q Consensus 101 l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~-~l~~l~~~~p~Le~L 179 (430)
..-.++|++|++++|. +..+. ...+.++++|+.|++++|.+... ..+..+.++++|+.|
T Consensus 117 ~~~~~~L~~L~l~~n~--l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 117 EKMPKTLQELRVHENE--ITKVR------------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp SSCCTTCCEEECCSSC--CCBBC------------------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred hhhcccccEEECCCCc--ccccC------------------HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 2223556666665543 11110 12234455555555555544321 112233445555555
Q ss_pred cccccccccccccc-ccccceEeccccccccccc---c-cCCCcceEEeccee-e-EE---eccccccceeEEEeeecCC
Q 014120 180 ALHYCMKLRSINIS-SPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV-E-SF---SSNALALSQTLLCFISHPV 249 (430)
Q Consensus 180 ~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~-~-~~---~~~~~sL~~v~l~~~~~~~ 249 (430)
+++++. +..++.. .++|+.|+++++ .++.+. + ..++|+.+...++. . .. ......++.+++.-+...
T Consensus 177 ~l~~n~-l~~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 177 RIADTN-ITTIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp ECCSSC-CCSCCSSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred ECCCCc-cccCCccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 554332 2222221 244555555554 333221 1 22444444444332 0 00 011223333333211000
Q ss_pred chHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccc--cCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCC
Q 014120 250 DNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREI--LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHA 327 (430)
Q Consensus 250 ~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~--~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~L 327 (430)
.+...+..+.+++.|++..+... .++...... ....+..++.|.+..++ . ..+.+.+.-+.+++++
T Consensus 254 ------~lp~~l~~l~~L~~L~l~~N~i~--~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~---~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 254 ------KVPGGLADHKYIQVVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSNP-V---QYWEIQPSTFRCVYVR 321 (330)
T ss_dssp ------SCCTTTTTCSSCCEEECCSSCCC--CCCTTSSSCSSCCTTSCCCSEEECCSSS-S---CGGGSCGGGGTTCCCG
T ss_pred ------cCChhhccCCCcCEEECCCCcCC--ccChhhcCCcccccccccccceEeecCc-c---cccccCccccccccce
Confidence 11122455677777776655433 222221111 11124667777777664 1 1223334456777788
Q ss_pred ceeeEe
Q 014120 328 ETLSIE 333 (430)
Q Consensus 328 e~L~i~ 333 (430)
+.+.+.
T Consensus 322 ~~l~L~ 327 (330)
T 1xku_A 322 AAVQLG 327 (330)
T ss_dssp GGEEC-
T ss_pred eEEEec
Confidence 877763
No 33
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=1.1e-13 Score=143.90 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=82.4
Q ss_pred CCCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeCCCCCccc--cCC
Q 014120 34 YLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLG 103 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l~~ 103 (430)
++++|++|+|++|.+.. +.....+++|++|+|++|. +++..+..++.+||+|+.|++++|..+..+. +..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 46677777777665322 1122367788888888775 5667777777778888888888774322110 112
Q ss_pred CCCcCEEEcCCCc------------------CCceEe--------------EeeccceeEEEeecCCCC---ceeccCCC
Q 014120 104 LNKLKEIKLDSNR------------------CGLERV--------------YINGVNVHSVDIKVYLEP---CEVNVSSC 148 (430)
Q Consensus 104 ~~~L~~L~l~~c~------------------~~l~~l--------------~i~~p~L~~L~l~~~~~~---~~~~~~~l 148 (430)
+++|++|++..|. ..+..+ ...+++|++|++++.... ....+.++
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 3444444432221 011111 013467777777662222 01113466
Q ss_pred CcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120 149 KNLTHLRLDGLSITDKWLYNQISELPFLEYLAL 181 (430)
Q Consensus 149 ~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L 181 (430)
++|+.|++.++ +++..++.+...+++|+.|++
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 77777777766 545555666666777777766
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=130.05 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=160.8
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
.+.+++....+|..++ ++|++|+++++.+.. +..+.++++|++|+|++|.+++.. +..+.++++|++|++++|..
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcC
Confidence 3444456778887665 489999999987654 346888999999999999875421 23467889999999998743
Q ss_pred --CCccccCCCCCcCEEEcCCCc-CCceE--eEeeccceeEEEeecC-CCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNR-CGLER--VYINGVNVHSVDIKVY-LEP--CEVNVSSCKNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~-~~l~~--l~i~~p~L~~L~l~~~-~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~ 167 (430)
+..-.+.++++|++|++++|. ..+.. ..-..++|++|++++. ... ....+.++++|+.|++++|.+++ ..+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCH
Confidence 222225677899999998875 22222 1123678888888773 222 12356778888888888888753 224
Q ss_pred HHhcCCCccceeccccccccccccc----cccccceEecccccccccccccCCCcceEEecceeeEEeccccccceeEEE
Q 014120 168 NQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLC 243 (430)
Q Consensus 168 ~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~ 243 (430)
..+.++++|+.|+++++. +..++. ..++|+.|+++++ .++.+.... +... .....+...++.
T Consensus 192 ~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~--l~~~----------~~~~~l~~l~L~ 257 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSE--LSTG----------ETNSLIKKFTFR 257 (353)
T ss_dssp TTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------------------CCCCCCEEEEE
T ss_pred HHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccc--cccc----------cccchhhccccc
Confidence 456678888888887665 333332 2567888888877 444332111 0000 001122222221
Q ss_pred eeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEe
Q 014120 244 FISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS 306 (430)
Q Consensus 244 ~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~ 306 (430)
-.. -.......+.+.+.++.+++.|++..+... .+|... ...+++|+.|.+..++
T Consensus 258 ~~~--l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~----~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 258 NVK--ITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGI----FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp SCB--CCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTT----TTTCTTCCEEECCSSC
T ss_pred ccc--ccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHH----HhcCCCCCEEEeeCCC
Confidence 110 011112355667788899998887766543 344322 1235778888887764
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=137.05 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=101.1
Q ss_pred EEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
.|+++++....+|..++ ++|++|+++++.+.. +..+.++++|++|+|++|.+++. .+..+.++++|++|++++|.
T Consensus 4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc
Confidence 45666677788998776 899999999987654 24678899999999999988643 13457889999999999974
Q ss_pred CCCccccCCCCCcCEEEcCCCc-CCce--EeEeeccceeEEEeecCCCCceeccCCCCcC--ceEEccCCCC
Q 014120 95 GLKSLQLLGLNKLKEIKLDSNR-CGLE--RVYINGVNVHSVDIKVYLEPCEVNVSSCKNL--THLRLDGLSI 161 (430)
Q Consensus 95 ~l~~l~l~~~~~L~~L~l~~c~-~~l~--~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L--~~L~L~~~~i 161 (430)
++.+....+++|++|++++|. ..+. ...-..++|++|++++..+. ...+..+++| +.|++++|.+
T Consensus 81 -l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 -LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-GGGGGGGTTSCEEEEEEEECTT
T ss_pred -eeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-hhhccccccceeeEEEeecccc
Confidence 445544467899999999875 1111 11123678888888874333 2456667777 8888888776
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=133.90 Aligned_cols=199 Identities=18% Similarity=0.140 Sum_probs=135.6
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++........+|..+. ++++.|+|+++.+.. +..+.++++|++|+|++|.++... ...+.++++|++|+|++|.
T Consensus 48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~- 123 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR- 123 (440)
T ss_dssp EECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-
T ss_pred EEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-
Confidence 3344455677887654 678999999887654 467888999999999999875421 2356788999999998874
Q ss_pred CCcc---ccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeec-CCCC--ceeccCCCCcCceEEccCCCCChHH
Q 014120 96 LKSL---QLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKV-YLEP--CEVNVSSCKNLTHLRLDGLSITDKW 165 (430)
Q Consensus 96 l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~-~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~ 165 (430)
++.+ .+.++++|++|++++|. +..+.. .+++|++|++++ .... ....+.++++|+.|++++|.+++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 199 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred CCeeCHhHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence 3332 35567889999998764 433321 367888888876 2222 12356788889999998888853
Q ss_pred HHHHhcCCCccceecccccccccccc-c---cccccceEeccccccccccc----ccCCCcceEEeccee
Q 014120 166 LYNQISELPFLEYLALHYCMKLRSIN-I---SSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV 227 (430)
Q Consensus 166 l~~l~~~~p~Le~L~L~~c~~l~~l~-~---~~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~~ 227 (430)
++. +..+++|+.|+++++. +..+. . ..++|+.|+++++ .++.+. -..++|+.+...++.
T Consensus 200 ~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 200 IPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC
T ss_pred ccc-cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC
Confidence 332 5678888888888764 33332 1 2567888888887 565543 234788888877765
No 37
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.40 E-value=1.9e-13 Score=137.63 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=120.6
Q ss_pred ccCCCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCC----CccEEEeeeCCCCCc---
Q 014120 32 VFYLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCP----LIEYININNCPGLKS--- 98 (430)
Q Consensus 32 l~~~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p----~Le~L~L~~c~~l~~--- 98 (430)
+..+++|++|++++|.+.. +..+..+++|++|+|++|.+++..+..+...++ +|++|++++|. ++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHH
Confidence 4457889999999987653 234567889999999999887776667766666 69999998875 331
Q ss_pred ----cccCCCCCcCEEEcCCCcCCceEe-----Ee----eccceeEEEeecCCCCc------eeccCCCCcCceEEccCC
Q 014120 99 ----LQLLGLNKLKEIKLDSNRCGLERV-----YI----NGVNVHSVDIKVYLEPC------EVNVSSCKNLTHLRLDGL 159 (430)
Q Consensus 99 ----l~l~~~~~L~~L~l~~c~~~l~~l-----~i----~~p~L~~L~l~~~~~~~------~~~~~~l~~L~~L~L~~~ 159 (430)
-.+.++++|++|++++|. +... .- ..++|++|++++..+.. ...+..+++|+.|++++|
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHccCCceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 235567889999998875 2211 00 12468888877632220 122345678888888888
Q ss_pred CCChHHHHHHhc----CCCccceeccccccccc----cccc---cccccceEeccccccccccc-------c--cCCCcc
Q 014120 160 SITDKWLYNQIS----ELPFLEYLALHYCMKLR----SINI---SSPRLKELVFERCEELVEFE-------L--DTPNLS 219 (430)
Q Consensus 160 ~i~~~~l~~l~~----~~p~Le~L~L~~c~~l~----~l~~---~~~~L~~L~l~~c~~L~~~~-------i--~~p~L~ 219 (430)
.+++..+..+.. ..+.|+.|++++|.--. .++. ..++|++|++++| .+++.. + ..++|+
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCce
Confidence 876544333322 45678888887764221 1121 2467888888877 444321 1 246666
Q ss_pred eEEecce
Q 014120 220 IFKCFNY 226 (430)
Q Consensus 220 ~~~~~~~ 226 (430)
++...+.
T Consensus 260 ~L~L~~n 266 (461)
T 1z7x_W 260 TLWIWEC 266 (461)
T ss_dssp EEECTTS
T ss_pred EEECcCC
Confidence 6666554
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.40 E-value=3.8e-14 Score=142.65 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=110.9
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++........+|. + .++|++|+|+++.+.. |..+.++++|++|+|++|.+........+.++++|++|++++|..
T Consensus 15 ~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 4444456778886 2 3789999999987654 577899999999999999774322234578899999999999864
Q ss_pred CC--ccccCCCCCcCEEEcCCCcCCceE--e----EeeccceeEEEeecCCCC--ceec-cCCCCcCceEEccCCCCChH
Q 014120 96 LK--SLQLLGLNKLKEIKLDSNRCGLER--V----YINGVNVHSVDIKVYLEP--CEVN-VSSCKNLTHLRLDGLSITDK 164 (430)
Q Consensus 96 l~--~l~l~~~~~L~~L~l~~c~~~l~~--l----~i~~p~L~~L~l~~~~~~--~~~~-~~~l~~L~~L~L~~~~i~~~ 164 (430)
-. .-.+.++++|++|++++|. +.. . .-..++|++|++++..+. .+.. +.++++|++|++++|.+++.
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCN--LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSC--CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CccChhhccCcccCCEEeCCCCC--CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 22 2246678999999999986 221 1 113689999999883332 1233 78899999999999987542
Q ss_pred HHHHHhcCC--Cccceeccccc
Q 014120 165 WLYNQISEL--PFLEYLALHYC 184 (430)
Q Consensus 165 ~l~~l~~~~--p~Le~L~L~~c 184 (430)
. +..+..+ +.|+.|+++++
T Consensus 170 ~-~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 170 C-EEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp C-TTTSGGGTTCEEEEEECTTC
T ss_pred C-hhhhhccccccccccccccC
Confidence 1 1112222 45556665544
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=126.44 Aligned_cols=209 Identities=16% Similarity=0.146 Sum_probs=143.6
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..+++|++ +++....+|. .+.++++|++|+++++.+.. +..+.++++|++|+|++|.++.-. ...+.++++|++
T Consensus 52 ~~L~~L~l--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDL--SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred ccCcEEEC--CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence 35666554 4456777776 57779999999999987654 456899999999999999986421 345788999999
Q ss_pred EEeeeCCC--CCc-cccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccC
Q 014120 88 ININNCPG--LKS-LQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDG 158 (430)
Q Consensus 88 L~L~~c~~--l~~-l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~ 158 (430)
|++++|.. +.. -.+.++++|++|++++|. .+..+. ...++|++|++++.... .+..+.++++|++|++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 99999743 222 235568999999999875 454442 13689999999883332 235678899999999999
Q ss_pred CCCChHHHHH-HhcCCCccceeccccccccccccc-------cccccceEeccccccccc-----cc---ccCCCcceEE
Q 014120 159 LSITDKWLYN-QISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFERCEELVE-----FE---LDTPNLSIFK 222 (430)
Q Consensus 159 ~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~~-------~~~~L~~L~l~~c~~L~~-----~~---i~~p~L~~~~ 222 (430)
|.+. .++. .+..+++|+.|+++++.- ..++. ....++.+++.++ .+.. +. -..++|+.+.
T Consensus 208 n~l~--~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 208 KQHI--LLLEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp SCST--THHHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred Cccc--cchhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEE
Confidence 9984 3443 556789999999987652 22111 1234555555544 2221 11 2346677777
Q ss_pred eccee
Q 014120 223 CFNYV 227 (430)
Q Consensus 223 ~~~~~ 227 (430)
..++.
T Consensus 284 Ls~N~ 288 (353)
T 2z80_A 284 FSRNQ 288 (353)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 66554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=1.6e-12 Score=135.75 Aligned_cols=252 Identities=18% Similarity=0.163 Sum_probs=139.5
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..++.|+| +++....+|+ .+..+++|++|+|++|.+.. |..+.++++|++|+|++|.++.- ...++.++++|++
T Consensus 75 ~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEC--CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCE
Confidence 45655554 4455666665 67779999999999987654 45678999999999999988532 1234678999999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeecCCCCceeccCCC----------------
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSC---------------- 148 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~~~~~~~~~~~~l---------------- 148 (430)
|++++|.. +..-.+.++++|++|++++|. +..+.+ ..++|+.+++++.... .+...
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L~l~~n~l~---~l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEEECCSSCCS---EEECCTTCSEEECCSSCCCEE
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhhhcccCccc---cccCCchhheeeccCCccccc
Confidence 99998753 222235667889999988874 222222 2455666655552211 11122
Q ss_pred -----CcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc---cccccceEecccccccccccccCCCcce
Q 014120 149 -----KNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFELDTPNLSI 220 (430)
Q Consensus 149 -----~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~i~~p~L~~ 220 (430)
++|+.|++++|.+++. ..+..++.|+.|+++++..-...+. ..++|+.|++++| .++.+..
T Consensus 227 ~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------- 295 (597)
T 3oja_B 227 RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL------- 295 (597)
T ss_dssp ECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC-------
T ss_pred ccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc-------
Confidence 3455555555555331 2344455555555554432211111 1344555555554 3332221
Q ss_pred EEecceeeEEeccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceE
Q 014120 221 FKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHV 300 (430)
Q Consensus 221 ~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L 300 (430)
.....+.|..+++.-+.... +...+..+.+++.|++..+.... + ....+++|+.|
T Consensus 296 ---------~~~~l~~L~~L~Ls~N~l~~-------i~~~~~~l~~L~~L~L~~N~l~~--~-------~~~~~~~L~~L 350 (597)
T 3oja_B 296 ---------YGQPIPTLKVLDLSHNHLLH-------VERNQPQFDRLENLYLDHNSIVT--L-------KLSTHHTLKNL 350 (597)
T ss_dssp ---------SSSCCTTCCEEECCSSCCCC-------CGGGHHHHTTCSEEECCSSCCCC--C-------CCCTTCCCSEE
T ss_pred ---------ccccCCCCcEEECCCCCCCc-------cCcccccCCCCCEEECCCCCCCC--c-------ChhhcCCCCEE
Confidence 11112233333332111111 11123556788888877665432 1 13356788888
Q ss_pred EEEEEe
Q 014120 301 SFSVLS 306 (430)
Q Consensus 301 ~l~~~~ 306 (430)
.+..++
T Consensus 351 ~l~~N~ 356 (597)
T 3oja_B 351 TLSHND 356 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 888775
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.40 E-value=3.8e-13 Score=129.93 Aligned_cols=256 Identities=14% Similarity=0.073 Sum_probs=111.6
Q ss_pred CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc---cccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEE
Q 014120 58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS---LQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVD 133 (430)
Q Consensus 58 ~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~ 133 (430)
++|++|+|++|.++... +..+.++++|++|++++|. ++. -.+.++++|++|++++|. +..+.. ..++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH--LVEIPPNLPSSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC--CCSCCSSCCTTCCEEE
T ss_pred CCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc--CCccCccccccCCEEE
Confidence 44555555555443210 1123445555555555442 111 123344555555555442 111110 014555555
Q ss_pred eecCCCC--ceeccCCCCcCceEEccCCCCChH-HHHHHhcCCCccceecccccccccccccc-ccccceEecccccccc
Q 014120 134 IKVYLEP--CEVNVSSCKNLTHLRLDGLSITDK-WLYNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELV 209 (430)
Q Consensus 134 l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~-~l~~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~ 209 (430)
+++..+. ....+.++++|+.|++++|.+++. ..+..+..+ .|+.|+++++. +..++.. .++|+.|+++++ .++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n-~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHN-KIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSS-CCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCC-cCC
Confidence 5442111 112345556666666666655421 112223333 55556555443 2222221 245555555555 333
Q ss_pred ccc----ccCCCcceEEeccee--eE---EeccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccce
Q 014120 210 EFE----LDTPNLSIFKCFNYV--ES---FSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAV 280 (430)
Q Consensus 210 ~~~----i~~p~L~~~~~~~~~--~~---~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~ 280 (430)
.+. -..++|+.+...++. .. .......++.+++.-+... .+...+..+.+++.|++..+...
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~l~-- 277 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHTNNIT-- 277 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCCEEECCSSCCC--
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCCEEECCCCCCC--
Confidence 322 123445555444432 00 0112233444443211000 11122466788887777665433
Q ss_pred ecCcc-cccc-cCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 281 LIPRE-LREI-LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 281 ~i~~~-l~~~-~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
.++.. .... ....+..++.|.+..++ . ..+++.+..+..+++|+.|.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~---~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNP-V---PYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSS-S---CGGGSCGGGGTTBCCSTTEEC-
T ss_pred ccChhHccccccccccccccceEeecCc-c---cccccCcccccccchhhhhhcc
Confidence 22221 1111 11124678888887765 1 1123334557888899988874
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.40 E-value=1.6e-13 Score=145.28 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=101.1
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++.+......+|..+. +++++|+|+++.+.. +..+.++++|++|+|++|.++... +..+.++++|++|++++|..
T Consensus 9 ~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCC
T ss_pred eECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCcc
Confidence 4455555667776543 678888888876544 245777888888888888764321 33456778888888887642
Q ss_pred --CCccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~ 167 (430)
+..-.+.++++|++|++++|. +..+. -.+++|++|++++.... ....+.++++|++|++++|.+++....
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNS--IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC--CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CccChhhhccCCCCCEEECCCCc--cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 222235567888888887764 22221 13577888888773221 123456778888888888877542222
Q ss_pred HH-hcCCCccceeccccc
Q 014120 168 NQ-ISELPFLEYLALHYC 184 (430)
Q Consensus 168 ~l-~~~~p~Le~L~L~~c 184 (430)
.+ ...++.|+.|+++++
T Consensus 164 ~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSN 181 (680)
T ss_dssp HHGGGTTCEESEEECTTC
T ss_pred HhhccccccccEEECCCC
Confidence 22 234677888887765
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.39 E-value=8.6e-13 Score=124.54 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=139.7
Q ss_pred EEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
.++........+|..+ .++|++|+++++.+.. +..+.++++|++|+|++|.++... +..+.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCC
Confidence 3455555677778654 4689999999987654 356889999999999999885431 3456789999999999987
Q ss_pred CCCcc---ccCCCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHH
Q 014120 95 GLKSL---QLLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKW 165 (430)
Q Consensus 95 ~l~~l---~l~~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~ 165 (430)
.++.+ .+.++++|++|++++|. +..+ .-..++|++|++++..+. ....+..+++|+.|++++|.+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 167 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-- 167 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CccccCHHHhcCCcCCCEEECCCCc--CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--
Confidence 55544 45667999999999875 2222 123678888888873322 12346788899999999988853
Q ss_pred HH-HHhcCCCccceeccccccccccccc---cccccceEeccccccccccc----ccCCCcceEEecce
Q 014120 166 LY-NQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNY 226 (430)
Q Consensus 166 l~-~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~ 226 (430)
++ ..+.++++|+.|+++++..-...+. ..++|+.|+++++ .++.+. -..++|+.+...++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 22 2466788999999987653222122 2468888888887 555443 23466666665554
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.39 E-value=2.5e-13 Score=141.75 Aligned_cols=256 Identities=13% Similarity=0.130 Sum_probs=169.5
Q ss_pred ccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEE
Q 014120 32 VFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK 111 (430)
Q Consensus 32 l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~ 111 (430)
+..+++|+.|+++++.+.....+..+++|++|++++|.+.. ++.+ .+++|+.|++++|..+....+.++++|++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 66789999999999877653378889999999999998832 3433 8999999999999877777777889999999
Q ss_pred cCCCcCCceEeE------eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccc
Q 014120 112 LDSNRCGLERVY------INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 112 l~~c~~~l~~l~------i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c 184 (430)
+++|. +..+. ..+++|++|++++.... .+..+.++++|+.|++++|.+.+......+.+++.|+.|++++|
T Consensus 357 ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSC--EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCc--cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 99875 33331 24688999998873322 23567788999999999998754322245678899999999887
Q ss_pred cccccccc---cccccceEeccccccccc--cc---ccCCCcceEEecceeeEEeccccccceeEEEeeecCCchHHHHH
Q 014120 185 MKLRSINI---SSPRLKELVFERCEELVE--FE---LDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLK 256 (430)
Q Consensus 185 ~~l~~l~~---~~~~L~~L~l~~c~~L~~--~~---i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~ 256 (430)
......+. ..++|+.|++++| .++. +. -..++|+.+...++. +.. .
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~---------l~~----~------------ 488 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ---------LEQ----I------------ 488 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC---------CCE----E------------
T ss_pred CCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc---------CCc----c------------
Confidence 65443332 2578999999888 4443 11 234666666665543 000 0
Q ss_pred HHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCC-CCceeeE
Q 014120 257 FIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITP-HAETLSI 332 (430)
Q Consensus 257 l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP-~Le~L~i 332 (430)
....+.++.+++.|++..+.... ..|.. ...+++|+.|.+..+. ...+. +. +...| +|+.|.+
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-----~~~l~~L~~L~l~~N~---l~~~p---~~-~~~l~~~L~~l~l 552 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLF-LDSSH-----YNQLYSLSTLDCSFNR---IETSK---GI-LQHFPKSLAFFNL 552 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC-EEGGG-----TTTCTTCCEEECTTSC---CCCEE---SC-GGGSCTTCCEEEC
T ss_pred ChhhhcccccCCEEECCCCcCCC-cCHHH-----ccCCCcCCEEECCCCc---CcccC---Hh-HhhhcccCcEEEc
Confidence 01223566777777776654332 22222 2235677777776553 11111 11 45666 5888887
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=1.1e-12 Score=137.14 Aligned_cols=192 Identities=17% Similarity=0.065 Sum_probs=138.0
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~ 89 (430)
.+++.++ ++++....+|..++ ++|++|++++|.+.. |. .+++|++|+|++|.++. ++. .+++|++|+
T Consensus 40 ~~l~~L~--ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLN--VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEE--CCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEE
T ss_pred CCCcEEE--ecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEE
Confidence 3565555 45566779998776 799999999998765 32 68999999999998853 222 789999999
Q ss_pred eeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120 90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (430)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l 169 (430)
+++|. ++.+.- .+++|+.|++++|. +..+....++|++|++++..+.. + -..+++|+.|++++|.++. ++
T Consensus 108 Ls~N~-l~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~-l-~~~~~~L~~L~L~~N~l~~--l~-- 177 (622)
T 3g06_A 108 IFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-L-PALPSELCKLWAYNNQLTS--LP-- 177 (622)
T ss_dssp ECSCC-CCCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-C-CCCCTTCCEEECCSSCCSC--CC--
T ss_pred CcCCc-CCCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCC-c-CCccCCCCEEECCCCCCCC--Cc--
Confidence 99874 343333 46899999999874 44444456899999998843321 1 1235689999999998854 33
Q ss_pred hcCCCccceeccccccccccccccccccceEecccccccccccccCCCcceEEeccee
Q 014120 170 ISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYV 227 (430)
Q Consensus 170 ~~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~~ 227 (430)
..+++|+.|+++++. +..++...++|+.|++++| .++.+.-..++|+.+...++.
T Consensus 178 -~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNR 232 (622)
T ss_dssp -CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSC
T ss_pred -ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCCc
Confidence 567899999997654 5566666788999999887 666655445777777766553
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.38 E-value=2.1e-13 Score=144.34 Aligned_cols=282 Identities=17% Similarity=0.113 Sum_probs=126.7
Q ss_pred CccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEee-----------------------
Q 014120 37 SIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININ----------------------- 91 (430)
Q Consensus 37 ~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~----------------------- 91 (430)
+|++|++++|.+.. +..+.++++|++|+|++|.++.. .+..+.++++|+.|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 36666666665432 34556666666666666655322 12233445555555554
Q ss_pred ----------eCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe------eccceeEEEeecCCCC--ceeccCCCCcC
Q 014120 92 ----------NCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI------NGVNVHSVDIKVYLEP--CEVNVSSCKNL 151 (430)
Q Consensus 92 ----------~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i------~~p~L~~L~l~~~~~~--~~~~~~~l~~L 151 (430)
+|.. +..-.+.++++|++|++++|......+.. ..++|+.|++++..+. .+..+.++++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 4321 11112334455555555544311111110 1135666666552222 12345666777
Q ss_pred ceEEccCCCCChHHHHHHhcCCCccceecccccccccccc---ccccccceEeccccccccccc------ccCCCcceEE
Q 014120 152 THLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---ISSPRLKELVFERCEELVEFE------LDTPNLSIFK 222 (430)
Q Consensus 152 ~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~~~------i~~p~L~~~~ 222 (430)
+.|++++|.+++......+.++++|+.|++++|......+ ...++|+.|+++++ .++.+. -..++|+.+.
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCcccccCCCCCEEE
Confidence 7777777766432222345566777777776654221111 12456666666655 222111 1235566666
Q ss_pred eccee-e-E---EeccccccceeEEEeeecCCch--HHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCC
Q 014120 223 CFNYV-E-S---FSSNALALSQTLLCFISHPVDN--EWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLT 295 (430)
Q Consensus 223 ~~~~~-~-~---~~~~~~sL~~v~l~~~~~~~~~--~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~ 295 (430)
..++. . + .......++.+++.-+...+.. .....-..++.++.+++.|++..+... .+|.. ....++
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~----~~~~l~ 560 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVE----VFKDLF 560 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTT----TTTTCT
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHH----Hccccc
Confidence 55443 1 0 0112233444444211000000 000000012456667776666554332 23321 122345
Q ss_pred CcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120 296 YHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 296 ~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i 332 (430)
+|+.|.+..+. +..+-+..+..+|+|++|.+
T Consensus 561 ~L~~L~Ls~N~------l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 561 ELKIIDLGLNN------LNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp TCCEEECCSSC------CCCCCTTTTTTCTTCCEEEC
T ss_pred CcceeECCCCC------CCcCCHhHhCCCCCCCEEEC
Confidence 66666665442 22222334566677777776
No 47
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=4.1e-14 Score=136.61 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=144.8
Q ss_pred HHHHHhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcC
Q 014120 5 LSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG 81 (430)
Q Consensus 5 i~~a~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~ 81 (430)
+......+++.+.+ ..+.....++.++.+++|++|++++|.+.. +..+.++++|++|+|++|.+++... ..++.
T Consensus 64 ~~~~~~~~l~~L~l--~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~ 140 (336)
T 2ast_B 64 TGRLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAK 140 (336)
T ss_dssp HHHHHHTTCSEEEC--TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTT
T ss_pred HHhhhhccceEEEc--CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-HHHhc
Confidence 34445577877765 334556666678899999999999987543 3456789999999999999887654 45677
Q ss_pred CCCccEEEeeeCCCCCcc----ccCCCCCcCEEEcCCCcCCceE-----eEeecc-ceeEEEeecC--CCC---ceeccC
Q 014120 82 CPLIEYININNCPGLKSL----QLLGLNKLKEIKLDSNRCGLER-----VYINGV-NVHSVDIKVY--LEP---CEVNVS 146 (430)
Q Consensus 82 ~p~Le~L~L~~c~~l~~l----~l~~~~~L~~L~l~~c~~~l~~-----l~i~~p-~L~~L~l~~~--~~~---~~~~~~ 146 (430)
+++|++|++++|..++.. .+.++++|++|++++|. .+.. ....++ +|++|++++. ... ....+.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 999999999999776642 14468999999999984 3332 123468 9999999983 222 123456
Q ss_pred CCCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccccccc----ccccccceEecccc
Q 014120 147 SCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRSIN----ISSPRLKELVFERC 205 (430)
Q Consensus 147 ~l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~----~~~~~L~~L~l~~c 205 (430)
++++|+.|++++|. +++..++ .+..+++|+.|++++|..+.... ...++|+.|++++|
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 78999999999998 6654444 45778999999999987543221 13689999999998
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=4.1e-12 Score=121.51 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=44.5
Q ss_pred ccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCC
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLG 103 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~ 103 (430)
....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.+++- + .+..+++|++|++++|..-....+.+
T Consensus 52 ~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~~~l~~ 127 (308)
T 1h6u_A 52 GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITDVTPLAG 127 (308)
T ss_dssp CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCCCGGGTT
T ss_pred CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCCCCCchhhcC
Confidence 344444 3445566666666665544321255566666666666655331 1 24455666666665553211112444
Q ss_pred CCCcCEEEcCCCc
Q 014120 104 LNKLKEIKLDSNR 116 (430)
Q Consensus 104 ~~~L~~L~l~~c~ 116 (430)
+++|++|++++|.
T Consensus 128 l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 128 LSNLQVLYLDLNQ 140 (308)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc
Confidence 5555666555543
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=2.8e-13 Score=140.91 Aligned_cols=282 Identities=11% Similarity=0.012 Sum_probs=180.3
Q ss_pred CCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC-----ccccCC
Q 014120 35 LKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK-----SLQLLG 103 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~-----~l~l~~ 103 (430)
+++|++|+++++.+.. +..+.++++|++|+|++|.+.+ ++..+.++++|++|+++.+.... ...+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4455555555444321 1123478999999999997754 56778899999999998654321 123456
Q ss_pred CCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcccee
Q 014120 104 LNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179 (430)
Q Consensus 104 ~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L 179 (430)
+++|+.+++..+. ..+..+.-.+++|++|++++.... ....+.++++|+.|++. +.+.+..++.+..++++|+.|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 7899999887653 233333345789999999883332 11224788999999998 667777788888889999999
Q ss_pred cccc----------cccccccc-----ccccccceEeccccccccccc-----ccCCCcceEEecce-----eeE-----
Q 014120 180 ALHY----------CMKLRSIN-----ISSPRLKELVFERCEELVEFE-----LDTPNLSIFKCFNY-----VES----- 229 (430)
Q Consensus 180 ~L~~----------c~~l~~l~-----~~~~~L~~L~l~~c~~L~~~~-----i~~p~L~~~~~~~~-----~~~----- 229 (430)
++++ |..+.... ...++|++|++ .|..++... -..|+|+.+...+. ..-
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 9985 76664321 23678999998 454665322 23688888887531 110
Q ss_pred ----EeccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEE
Q 014120 230 ----FSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVL 305 (430)
Q Consensus 230 ----~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~ 305 (430)
.......|+.+++......-.. ..+..+...+++++.|++..+......++... ..+++|+.|.+..+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-----RGCPNLQKLEMRGC 498 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-----TCCTTCCEEEEESC
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCCCCCHHHHHHHH-----hcCcccCeeeccCC
Confidence 0122456777777431100000 13455556688999999887764332222211 13478999999887
Q ss_pred eccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 306 SEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 306 ~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
+ .. ...++.+...+|+|+.|.+.
T Consensus 499 ~-l~----~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 499 C-FS----ERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp C-CB----HHHHHHHHHHCSSCCEEEEE
T ss_pred C-Cc----HHHHHHHHHhcCccCeeECc
Confidence 4 21 12345667889999999995
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=3.1e-12 Score=122.37 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=136.9
Q ss_pred CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcC
Q 014120 34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD 113 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~ 113 (430)
.+++|++|+++++.+.....+..+++|++|+|++|.+++. .. +..+++|++|++++|..-..-.+.++++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 4789999999998876544688899999999999998653 22 88999999999999863222246678999999999
Q ss_pred CCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc
Q 014120 114 SNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI 192 (430)
Q Consensus 114 ~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~ 192 (430)
+|. ..+.. ...+++|++|++++........+..+++|+.|++++|.+++ ++. +.++++|+.|+++++. +..++.
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~ 190 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNK-ISDISP 190 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCCGG
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCc-cCcChh
Confidence 886 22222 12368999999988433322337788999999999999865 222 7789999999998764 333332
Q ss_pred --cccccceEeccccccccccc--ccCCCcceEEeccee
Q 014120 193 --SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYV 227 (430)
Q Consensus 193 --~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~ 227 (430)
..++|+.|++++| .++.+. -..++|+.+...++.
T Consensus 191 l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 3578999999998 565443 345788888776664
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.35 E-value=1.3e-11 Score=127.15 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=20.5
Q ss_pred CCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120 295 TYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (430)
Q Consensus 295 ~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~ 333 (430)
.+|+.|.+..+. +..+-..+.+.+|+|++|.+.
T Consensus 310 ~~L~~L~l~~n~------l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 310 EKVKRITVENSK------VFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp TTCCEEEEESSC------CCCCCHHHHHHCTTCCEEECC
T ss_pred ccceEEEeccCc------cccCCHHHHhcCccccEEEcc
Confidence 467777776552 112222445788999999984
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.35 E-value=1.1e-12 Score=125.93 Aligned_cols=208 Identities=14% Similarity=0.058 Sum_probs=143.2
Q ss_pred CceEEEEEecCCccc---cCCccccCCCCccEEEEcC-ccCC--CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCc
Q 014120 12 NVKELKLDVGCCRIY---NLPQIVFYLKSIYVLDFEF-CKLE--PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI 85 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~---~LP~~l~~~~~L~~L~Ls~-~~~~--~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~L 85 (430)
.|++++|.. +... .+|+.+.++++|++|++++ +.+. .|..+.++++|++|+|++|.++.. ++..+.++++|
T Consensus 51 ~l~~L~L~~--~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSG--LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEEC--CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred eEEEEECCC--CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence 455555544 3333 6899999999999999995 5443 366788999999999999988532 24457889999
Q ss_pred cEEEeeeCCCC--CccccCCCCCcCEEEcCCCcCCce-EeE---eecc-ceeEEEeecCCCC--ceeccCCCCcCceEEc
Q 014120 86 EYININNCPGL--KSLQLLGLNKLKEIKLDSNRCGLE-RVY---INGV-NVHSVDIKVYLEP--CEVNVSSCKNLTHLRL 156 (430)
Q Consensus 86 e~L~L~~c~~l--~~l~l~~~~~L~~L~l~~c~~~l~-~l~---i~~p-~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L 156 (430)
++|++++|..- ..-.+.++++|++|++++|. +. .+. ...+ +|++|++++.... .+..+..++ |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 99999998532 22235668999999999875 32 221 1234 8899988873221 234556665 999999
Q ss_pred cCCCCChHHHHHHhcCCCccceeccccccccccccc--cccccceEecccccccc-ccc---ccCCCcceEEeccee
Q 014120 157 DGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELV-EFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 157 ~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~-~~~---i~~p~L~~~~~~~~~ 227 (430)
++|.+++ ..+..+..+++|+.|+++++.....++. ..++|+.|+++++ .++ .+. -..++|+.+...++.
T Consensus 205 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 205 SRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CSSEEEE-CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cCCcccC-cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCc
Confidence 9998853 3455677889999999987654333332 2578999999888 454 222 244677777766553
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=4.6e-13 Score=138.74 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred EEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
.++++++....+|..+. ++|++|+++++.+.. +..+.++++|++|+|++|.++... +..+.++++|++|++++|.
T Consensus 35 ~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCc
Confidence 45566666777887654 788888888876654 356788888888888888775421 3346678888888888864
Q ss_pred CCCccccCCCCCcCEEEcCCCcCCceEeE-----eeccceeEEEeecCCCCceeccCCCCcC--ceEEccCCCC
Q 014120 95 GLKSLQLLGLNKLKEIKLDSNRCGLERVY-----INGVNVHSVDIKVYLEPCEVNVSSCKNL--THLRLDGLSI 161 (430)
Q Consensus 95 ~l~~l~l~~~~~L~~L~l~~c~~~l~~l~-----i~~p~L~~L~l~~~~~~~~~~~~~l~~L--~~L~L~~~~i 161 (430)
++.+...++++|++|++++|. +..+. -..++|++|++++..+. ...+..+++| +.|++++|.+
T Consensus 112 -l~~lp~~~l~~L~~L~Ls~N~--l~~l~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 -LQNISCCPMASLRHLDLSFND--FDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -CCEECSCCCTTCSEEECCSSC--CSBCCCCGGGGGCTTCCEEEEECSBCC-TTTTGGGTTSCEEEEEEEESSC
T ss_pred -CCccCccccccCCEEECCCCC--ccccCchHhhcccCcccEEecCCCccc-cCchhhhhhceeeEEEeecccc
Confidence 444443356788888887764 22221 13567777777663222 1233334444 5555555544
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=2.5e-12 Score=129.56 Aligned_cols=210 Identities=16% Similarity=0.061 Sum_probs=153.0
Q ss_pred CCceEEEEEecCCccccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.+++.|+| +++....+ |..+.++++|++|+|+++.+.. +..+.++++|++|+|++|.++... ...+.++++|++
T Consensus 75 ~~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNL--MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCE
T ss_pred CCccEEEC--cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCE
Confidence 35666555 44556666 4567779999999999987654 467889999999999999885321 334678999999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i 161 (430)
|+|++|.. +..-.+.++++|+.|++++|. .+..+.. ..++|++|++++..+.....+..+++|+.|+|++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 99999853 222235678999999999887 6666543 3689999999884433234577889999999999998
Q ss_pred ChHHHHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120 162 TDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY 226 (430)
Q Consensus 162 ~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~ 226 (430)
++ ..+..+.++++|+.|+++++..-...+. ..++|+.|+++++ .++.+. + ..++|+.+...++
T Consensus 231 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 231 PE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 54 2245678899999999987653222121 2578999999998 676554 2 3477888777665
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.34 E-value=7.6e-12 Score=120.55 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=118.8
Q ss_pred CceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
.++.+ +++++....+|+ .+.++++|++|+++++.+.. |..+.++++|++|+|++|.++.- +. ...++|++|
T Consensus 53 ~l~~L--~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~~--~~~~~L~~L 126 (330)
T 1xku_A 53 DTALL--DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--PE--KMPKTLQEL 126 (330)
T ss_dssp TCCEE--ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--CS--SCCTTCCEE
T ss_pred CCeEE--ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--Ch--hhcccccEE
Confidence 45554 455556777776 56679999999999987654 56788899999999999877421 11 122677888
Q ss_pred EeeeCCC--CCccccCCCCCcCEEEcCCCcCC---ceEe-EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 89 NINNCPG--LKSLQLLGLNKLKEIKLDSNRCG---LERV-YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~---l~~l-~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
++++|.. +..-.+.++++|+.|+++.|.-. .... .-.+++|++|++++.... .....-.++|+.|++++|.++
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKIT 205 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCCcCC
Confidence 8777642 11222455677777777765400 1000 112466777777662221 011111256777777777664
Q ss_pred hHHHHHHhcCCCccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120 163 DKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 163 ~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~ 227 (430)
+. .+..+.++++|+.|+++++.. ..++. ..++|+.|++++| .++.+. ...++|+.+...++.
T Consensus 206 ~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 206 KV-DAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EE-CTGGGTTCTTCCEEECCSSCC-CEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred cc-CHHHhcCCCCCCEEECCCCcC-ceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 31 123455667777777765542 22211 2456777777766 455442 234666666665543
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.34 E-value=8e-13 Score=125.99 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=132.7
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHH-HHHHhcCCCCccEEEeeeCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEV-IRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~-l~~l~~~~p~Le~L~L~~c~ 94 (430)
++........+|..+. ++|++|+++++.+.. | ..+.++++|++|+|++|.++... ....+.++++|++|++++|.
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4455556778887654 689999999987654 3 44789999999999999885321 12234478999999999875
Q ss_pred CCCcc--ccCCCCCcCEEEcCCCc-CCceE--eEeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120 95 GLKSL--QLLGLNKLKEIKLDSNR-CGLER--VYINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 95 ~l~~l--~l~~~~~L~~L~l~~c~-~~l~~--l~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~ 167 (430)
. ..+ .+.++++|++|++++|. ..+.. .....++|++|++++.... ....+.++++|++|++++|.+++..++
T Consensus 90 i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp E-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred c-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 3 222 24567899999998864 11111 1123577888888773221 123466778888888888877543455
Q ss_pred HHhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee
Q 014120 168 NQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV 227 (430)
Q Consensus 168 ~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~ 227 (430)
..+..+++|+.|+++++..-...+. ..++|+.|+++++ .++.+. + ..++|+.+...++.
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCC
Confidence 5667788888888876643221121 2467888888877 454432 2 23666666665543
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=126.78 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred CCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccc--cccc---cccccceEeccccccccc-ccc----cC
Q 014120 146 SSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLR--SINI---SSPRLKELVFERCEELVE-FEL----DT 215 (430)
Q Consensus 146 ~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~--~l~~---~~~~L~~L~l~~c~~L~~-~~i----~~ 215 (430)
..+++|++|++++|.+++ .++..+.+++.|+.|+++++..-. .++. ..++|+.|+++++ .++. +.. ..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccC
Confidence 677899999999998864 234556789999999998765322 3221 3578999999988 5554 431 23
Q ss_pred CCcceEEecceeeEEeccccccceeEEEeeecCCchHHHHHHHHHHhhC-CCCceEeeeEeeccceecCcccccccCCCC
Q 014120 216 PNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARF-NLCSNVLNLQCNHEAVLIPRELREILCPPL 294 (430)
Q Consensus 216 p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~ 294 (430)
++|+.+...++. + . ......+ .+++.|++..+... .+|.... .+
T Consensus 399 ~~L~~L~Ls~N~-l------------------~---------~~~~~~l~~~L~~L~Ls~N~l~--~ip~~~~-----~l 443 (520)
T 2z7x_B 399 KSLLSLNMSSNI-L------------------T---------DTIFRCLPPRIKVLDLHSNKIK--SIPKQVV-----KL 443 (520)
T ss_dssp TTCCEEECCSSC-C------------------C---------GGGGGSCCTTCCEEECCSSCCC--CCCGGGG-----GC
T ss_pred ccCCEEECcCCC-C------------------C---------cchhhhhcccCCEEECCCCccc--ccchhhh-----cC
Confidence 566666554432 0 0 0011122 46676666655433 4444332 34
Q ss_pred CCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120 295 TYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 295 ~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i 332 (430)
++|++|.+..+. +..+-+..+..+|+|++|.+
T Consensus 444 ~~L~~L~L~~N~------l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 444 EALQELNVASNQ------LKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TTCCEEECCSSC------CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCc------CCccCHHHhccCCcccEEEC
Confidence 677777776653 11111123567788888887
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=2.6e-13 Score=130.38 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=127.9
Q ss_pred CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEc
Q 014120 35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL 112 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l 112 (430)
+++|++|+|+++.+.. +..+.++++|++|+|++|.+++.. . +..+++|++|++++|. ++.+. ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEEC
Confidence 6689999999987654 245778899999999998874321 1 6788899999998874 33322 3478888888
Q ss_pred CCCcCCceEe-EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccc
Q 014120 113 DSNRCGLERV-YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRS 189 (430)
Q Consensus 113 ~~c~~~l~~l-~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~ 189 (430)
++|. +..+ ....++|++|++++..+. ....+..+++|+.|++++|.+++.....+...++.|+.|+++++. +..
T Consensus 107 ~~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 107 ANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CSSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 8864 3333 223678888888883332 234667788999999999988654444455678899999998765 333
Q ss_pred ccc--cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120 190 INI--SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 190 l~~--~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~ 227 (430)
++. ..++|+.|+++++ .++.+. ...++|+.+...++.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred cccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc
Confidence 332 2678899999887 565442 345788888877664
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.32 E-value=1.4e-12 Score=125.01 Aligned_cols=193 Identities=15% Similarity=0.104 Sum_probs=139.8
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCC--CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~--~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
..++.|+|.-.+.-...+|..+.++++|++|+|+++.+. .|..+.++++|++|+|++|.+++. ++..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence 467788876322334478989999999999999998765 366789999999999999988532 24457889999999
Q ss_pred EeeeCCCCCc--cccCCCC-CcCEEEcCCCcCCce-Ee--EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCC
Q 014120 89 NINNCPGLKS--LQLLGLN-KLKEIKLDSNRCGLE-RV--YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLS 160 (430)
Q Consensus 89 ~L~~c~~l~~--l~l~~~~-~L~~L~l~~c~~~l~-~l--~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~ 160 (430)
++++|..-.. ..+.+++ +|+.|++++|. +. .+ .+....|+.|++++.... .+..+.++++|+.|++++|.
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCe--eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 9999864212 2344565 99999999875 22 11 122224899999883221 23567889999999999998
Q ss_pred CChHHHHHHhcCCCccceeccccccccccccc---cccccceEecccccccc
Q 014120 161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELV 209 (430)
Q Consensus 161 i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~ 209 (430)
++.. ++. +..+++|+.|+++++.....++. ..++|+.|+++++ .++
T Consensus 233 l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~ 281 (313)
T 1ogq_A 233 LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLC 281 (313)
T ss_dssp ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEE
T ss_pred eeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-ccc
Confidence 8532 222 67789999999998765444443 2578999999998 454
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=4.9e-12 Score=127.03 Aligned_cols=210 Identities=14% Similarity=0.095 Sum_probs=152.1
Q ss_pred CCceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.+++.|+| ..+....+| ..+.++++|++|+|+++.+.. +..+.++++|++|+|++|.++... ...+..+++|++
T Consensus 64 ~~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNL--HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEEC--CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEc--cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence 34566554 445566665 556779999999999987654 357889999999999999885321 235778999999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i 161 (430)
|++++|.. +....+.++++|++|++++|. .+..+.. ..++|++|++++..+.....+..+++|+.|+|++|.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 99999753 222245678999999999876 6655532 3689999999884333233578889999999999998
Q ss_pred ChHHHHHHhcCCCccceeccccccccccccc----cccccceEecccccccccccc----cCCCcceEEeccee
Q 014120 162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFEL----DTPNLSIFKCFNYV 227 (430)
Q Consensus 162 ~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i----~~p~L~~~~~~~~~ 227 (430)
++ ..+..+.++++|+.|+++++. +..+.. ..++|+.|+++++ .++.+.. ..++|+.+...++.
T Consensus 220 ~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SA-IRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CE-ECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred Cc-cChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 54 224567789999999998764 333322 2578999999998 6765542 34777777776653
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.8e-12 Score=132.07 Aligned_cols=193 Identities=16% Similarity=0.118 Sum_probs=132.1
Q ss_pred cccCCccccCC----CCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120 25 IYNLPQIVFYL----KSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS 98 (430)
Q Consensus 25 ~~~LP~~l~~~----~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~ 98 (430)
...+|..+... ++|++|+|+++.+.. |..+.++++|++|+|++|.+++.. + +..+++|++|+|++|. ++.
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~ 94 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQE 94 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEE
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCC
Confidence 34455555553 379999999987654 356788999999999998875321 1 7788999999998873 333
Q ss_pred cccCCCCCcCEEEcCCCcCCceEe-EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCc
Q 014120 99 LQLLGLNKLKEIKLDSNRCGLERV-YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPF 175 (430)
Q Consensus 99 l~l~~~~~L~~L~l~~c~~~l~~l-~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~ 175 (430)
+. ..++|++|++++|. +..+ ....++|++|++++..+. .+..+.++++|+.|+|++|.+++.....+...++.
T Consensus 95 l~--~~~~L~~L~L~~N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 95 LL--VGPSIETLHAANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp EE--ECTTCCEEECCSSC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CC--CCCCcCEEECcCCc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 32 23788888888875 3322 223678888888873332 23466778889999999998865433444457889
Q ss_pred cceeccccccccccccc--cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120 176 LEYLALHYCMKLRSINI--SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 176 Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~ 227 (430)
|+.|+++++. +..++. ..++|+.|+++++ .++.+. ...++|..+...++.
T Consensus 171 L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 171 LEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred ccEEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc
Confidence 9999998765 333332 2678888988887 565442 245788888877765
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=2e-11 Score=123.15 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 36 KSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 36 ~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
++|++|+++++.+..... ..++|++|++++|.++. ++ .+.++++|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCC
Confidence 556666666654433111 11466666666665543 22 2555666666666665
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.30 E-value=6.5e-12 Score=117.66 Aligned_cols=182 Identities=20% Similarity=0.185 Sum_probs=106.2
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++.+......+|..+. +++++|+++++.+.. +..+.++++|++|+|++|.++.-. ...+.++++|++|++++|..
T Consensus 21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcC
Confidence 4455556777887654 689999999987654 356889999999999999875321 23457889999999998752
Q ss_pred --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH-HHhcC
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY-NQISE 172 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~-~l~~~ 172 (430)
+..-.+.++++|++|+++++. +..+. ...+.++++|++|++++|.++. ++ ..+..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~--l~~~~------------------~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~ 155 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQ--LKSLP------------------PRVFDSLTKLTYLSLGYNELQS--LPKGVFDK 155 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSC--CCCCC------------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCc--cCeeC------------------HHHhCcCcCCCEEECCCCcCCc--cCHhHccC
Confidence 222224567888888888764 11110 1224455555555555555532 11 12344
Q ss_pred CCccceeccccccccccccc----cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120 173 LPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY 226 (430)
Q Consensus 173 ~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~ 226 (430)
+++|+.|+++++. +..++. ..++|+.|+++++ .++.+. + ..++|+.+...++
T Consensus 156 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 156 LTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 5555555555432 222221 1345566666555 444332 1 2345555554443
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=3.5e-12 Score=120.31 Aligned_cols=188 Identities=17% Similarity=0.104 Sum_probs=136.4
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCcc
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIE 86 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le 86 (430)
..+++|++ +++....+|. .+..+++|++|+++++.+.. +..+.++++|++|+|++|. ++... +..+..+++|+
T Consensus 32 ~~l~~L~l--~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEe--eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 45666554 4455667775 46679999999999987653 5678899999999999997 54321 34567899999
Q ss_pred EEEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeE---e-eccceeEEEeecCCCC--ceeccCCCCcCceEEccC
Q 014120 87 YININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVY---I-NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDG 158 (430)
Q Consensus 87 ~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~---i-~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~ 158 (430)
+|++++|.. +..-.+.++++|++|++++|. +..+. + ..++|++|++++..+. ....+.++++|+.|++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 999999853 222235678999999999875 33322 2 3689999999984333 123478899999999999
Q ss_pred CCCChHHHHHHhcCCCccceeccccccccccccc----cccccceEecccc
Q 014120 159 LSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC 205 (430)
Q Consensus 159 ~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c 205 (430)
|.+++ ..+..+.++++|+.|+++++. +..++. ..++|+.|+++++
T Consensus 187 n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 187 NRVAH-VHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SCCCE-ECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred Ccccc-cCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence 99854 224567789999999998764 333332 2578999999887
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=1.8e-11 Score=126.66 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=86.4
Q ss_pred CCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc---c---ccccccceEeccccccccc-cc----cc
Q 014120 146 SSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI---N---ISSPRLKELVFERCEELVE-FE----LD 214 (430)
Q Consensus 146 ~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~---~~~~~L~~L~l~~c~~L~~-~~----i~ 214 (430)
..+++|++|++++|.+++ .++..+.++++|+.|+++++. +..+ + ...++|+.|+++++ .++. +. -.
T Consensus 350 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCcccc-chhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence 567899999999999864 344566889999999998764 3332 2 13578999999998 5554 33 22
Q ss_pred CCCcceEEecceeeEEeccccccceeEEEeeecCCchHHHHHHHHHHhhC-CCCceEeeeEeeccceecCcccccccCCC
Q 014120 215 TPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARF-NLCSNVLNLQCNHEAVLIPRELREILCPP 293 (430)
Q Consensus 215 ~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~i~~~l~~~~~p~ 293 (430)
.++|+.+...++. +. ......+ .+++.|++..+... .+|.... .
T Consensus 427 l~~L~~L~l~~n~-l~---------------------------~~~~~~l~~~L~~L~L~~N~l~--~ip~~~~-----~ 471 (562)
T 3a79_B 427 AESILVLNLSSNM-LT---------------------------GSVFRCLPPKVKVLDLHNNRIM--SIPKDVT-----H 471 (562)
T ss_dssp CTTCCEEECCSSC-CC---------------------------GGGGSSCCTTCSEEECCSSCCC--CCCTTTT-----S
T ss_pred cccCCEEECCCCC-CC---------------------------cchhhhhcCcCCEEECCCCcCc--ccChhhc-----C
Confidence 3566666555442 00 0111223 46776666655433 3444332 3
Q ss_pred CCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120 294 LTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (430)
Q Consensus 294 ~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i 332 (430)
+++|+.|.+..+. +..+-+..+..+|+|+.|.+
T Consensus 472 l~~L~~L~L~~N~------l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 472 LQALQELNVASNQ------LKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp SCCCSEEECCSSC------CCCCCTTSTTTCTTCCCEEC
T ss_pred CCCCCEEECCCCC------CCCCCHHHHhcCCCCCEEEe
Confidence 4677777776653 11111123577788888887
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.28 E-value=8e-12 Score=114.72 Aligned_cols=191 Identities=14% Similarity=0.064 Sum_probs=121.4
Q ss_pred cccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCccc-
Q 014120 25 IYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ- 100 (430)
Q Consensus 25 ~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~- 100 (430)
...+|. + ..+|++|+++++.+.. +..+.++++|++|+|++|. ++.-. ...+.++++|++|++++|..++.+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 556675 2 3478899998877654 3467888999999999886 64321 2246788899999998865655543
Q ss_pred --cCCCCCcCEEEcCCCc-CCceEeEeecccee---EEEeecC-CCC--ceeccCCCCcCc-eEEccCCCCChHHHHH-H
Q 014120 101 --LLGLNKLKEIKLDSNR-CGLERVYINGVNVH---SVDIKVY-LEP--CEVNVSSCKNLT-HLRLDGLSITDKWLYN-Q 169 (430)
Q Consensus 101 --l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~---~L~l~~~-~~~--~~~~~~~l~~L~-~L~L~~~~i~~~~l~~-l 169 (430)
+.++++|++|++++|. ..++. ....++|+ +|++++. .+. ....+.++++|+ .|++++|.++ .++. .
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhh
Confidence 4467888888888764 22222 11244555 7777763 332 123467788888 8888888874 3333 2
Q ss_pred hcCCCccceeccccccccccccc----cc-cccceEecccccccccccc-cCCCcceEEec
Q 014120 170 ISELPFLEYLALHYCMKLRSINI----SS-PRLKELVFERCEELVEFEL-DTPNLSIFKCF 224 (430)
Q Consensus 170 ~~~~p~Le~L~L~~c~~l~~l~~----~~-~~L~~L~l~~c~~L~~~~i-~~p~L~~~~~~ 224 (430)
+.. +.|+.|++++++.+..++. .. ++|+.|+++++ .++.+.. ..++++.+...
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIAR 234 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECT
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeecc
Confidence 333 7888888887765555533 13 67888888876 5555432 23455555443
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=135.09 Aligned_cols=171 Identities=13% Similarity=0.112 Sum_probs=88.7
Q ss_pred CCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCC
Q 014120 28 LPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNK 106 (430)
Q Consensus 28 LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~ 106 (430)
.|..+..+++|+.|+++++.+.. |..+..+ +|++|++++|.++. ++. ..+++|+.|++++|..........+++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCC
Confidence 45555566777777777765433 4445556 77777777776642 111 356777777777766544433345677
Q ss_pred cCEEEcCCCcCCceEeE------eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcccee
Q 014120 107 LKEIKLDSNRCGLERVY------INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179 (430)
Q Consensus 107 L~~L~l~~c~~~l~~l~------i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L 179 (430)
|++|++++|. +.... ..+++|++|++++.... ....+.++++|+.|++++|.+.+......+.++++|+.|
T Consensus 349 L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 349 LEFLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp CCEEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCEEeCcCCc--cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 7777777654 22211 12455565555552111 112245555666666665554321111234455556666
Q ss_pred ccccccccccccc---cccccceEecccc
Q 014120 180 ALHYCMKLRSINI---SSPRLKELVFERC 205 (430)
Q Consensus 180 ~L~~c~~l~~l~~---~~~~L~~L~l~~c 205 (430)
++++|......+. ..++|+.|++++|
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 5555432222211 1344555555554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=1.7e-11 Score=124.74 Aligned_cols=201 Identities=22% Similarity=0.161 Sum_probs=140.7
Q ss_pred CceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
+++.|+| +++....+| ..+..+++|++|+|++|.+.....+.++++|++|+|++|.+++ +...++|+.|++
T Consensus 35 ~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDL--SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (487)
T ss_dssp GCCEEEC--CSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CccEEEe--eCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence 4555554 445566665 4677799999999999987642238899999999999998854 224489999999
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEe-eccceeEEEeecCCCC--ceeccC-CCCcCceEEccCCCCChHH
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYI-NGVNVHSVDIKVYLEP--CEVNVS-SCKNLTHLRLDGLSITDKW 165 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i-~~p~L~~L~l~~~~~~--~~~~~~-~l~~L~~L~L~~~~i~~~~ 165 (430)
++|. +..+....+++|+.|++++|. .++.+..+ .+++|++|++++..+. .+..+. .+++|+.|+|++|.+++.
T Consensus 107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 9975 444444557899999999886 23322222 3689999999984333 123443 789999999999999652
Q ss_pred HHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc--c-cCCCcceEEecce
Q 014120 166 LYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE--L-DTPNLSIFKCFNY 226 (430)
Q Consensus 166 l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~--i-~~p~L~~~~~~~~ 226 (430)
+. ...++.|+.|+++++. +..++. ..++|+.|+++++ .++.+. + ..++|..+.+.|+
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred -cc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence 21 2358999999998765 333332 2578999999998 566543 2 2356666666554
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=2.4e-12 Score=122.71 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=147.3
Q ss_pred CCceEEEEEecCCccccCCccc-cCCCCccEEEEcCccCCC----CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCc
Q 014120 11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI 85 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l-~~~~~L~~L~Ls~~~~~~----~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~L 85 (430)
.++++|+| +++....+|..+ .++++|++|+++++.+.. +..+.++++|++|+|++|.++. ++..+.++++|
T Consensus 28 ~~l~~L~L--~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEEC--CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 45666655 445677888775 569999999999987652 2345578999999999998743 22336789999
Q ss_pred cEEEeeeCCC--CCc-cccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC---ceeccCCCCcCceEE
Q 014120 86 EYININNCPG--LKS-LQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLR 155 (430)
Q Consensus 86 e~L~L~~c~~--l~~-l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~ 155 (430)
++|++++|.. +.. -.+.++++|++|++++|. +.... -..++|++|++++.... .+..+..+++|+.|+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 9999998753 222 235567999999999875 32221 13689999999883221 235678899999999
Q ss_pred ccCCCCChHHHHHHhcCCCccceeccccccccccccc----cccccceEeccccccccccc---c-cC-CCcceEEecce
Q 014120 156 LDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---L-DT-PNLSIFKCFNY 226 (430)
Q Consensus 156 L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i-~~-p~L~~~~~~~~ 226 (430)
+++|.+++ ..+..+.++++|+.|+++++.. ..++. ..++|+.|+++++ .++... + .. ++|+++...++
T Consensus 182 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 182 LSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTSCCCE-ECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCCCcCC-cCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCC
Confidence 99999854 2244567899999999987653 22222 2578999999998 555432 2 23 37888877665
Q ss_pred e
Q 014120 227 V 227 (430)
Q Consensus 227 ~ 227 (430)
.
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=7.9e-12 Score=117.28 Aligned_cols=203 Identities=20% Similarity=0.192 Sum_probs=134.5
Q ss_pred EecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG- 95 (430)
Q Consensus 19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~- 95 (430)
+........+|..+. ++|++|+++++.+.. +..+.++++|++|+|++|.++... ...+.++++|++|++++|..
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccC
Confidence 333445667786653 579999999987654 347888999999999999875421 23467889999999998753
Q ss_pred -CCccccCCCCCcCEEEcCCCc-CCceEeEe-eccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCCh---HHH
Q 014120 96 -LKSLQLLGLNKLKEIKLDSNR-CGLERVYI-NGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITD---KWL 166 (430)
Q Consensus 96 -l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i-~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~---~~l 166 (430)
+..-.+.++++|++|++++|. ..+....+ ..++|++|++++..+. .+..+.++++|+.|++++|.+++ ..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 222235677899999998875 22222222 3689999999883322 23567889999999999999865 122
Q ss_pred HHHhcCCCccc-eeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee
Q 014120 167 YNQISELPFLE-YLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV 227 (430)
Q Consensus 167 ~~l~~~~p~Le-~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~ 227 (430)
.. +..++.|. .|+++++. +..++. ...+|+.|+++++ .++.+. + ..++|+.+...++.
T Consensus 170 ~~-l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RV-LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HH-HHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hh-hhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 22 22333333 67776554 333322 2347999999998 566553 2 35777777766553
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.22 E-value=2e-11 Score=111.98 Aligned_cols=189 Identities=13% Similarity=0.087 Sum_probs=132.5
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCcc-CCC--CCCCCCCCCCCEEEEee-ecCChHHHHHHhcCCCCc
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCK-LEP--PRSTVTLFSLRKLCLSF-VHVDDEVIRDMVAGCPLI 85 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~-~~~--~~~~~~l~~L~~L~Ls~-~~~~~~~l~~l~~~~p~L 85 (430)
..++++++.. +....+|+ .+..+++|++|+++++. +.. +..+.++++|++|+|++ |.++.-. ...+.++++|
T Consensus 31 ~~l~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIE--THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEES--CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeC--CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 3566666654 55777776 45679999999999986 543 35788999999999998 7775321 2356789999
Q ss_pred cEEEeeeCCCCCccccCCCCCcC---EEEcCCCcCCceEeEe----ecccee-EEEeecCCCC-c-eeccCCCCcCceEE
Q 014120 86 EYININNCPGLKSLQLLGLNKLK---EIKLDSNRCGLERVYI----NGVNVH-SVDIKVYLEP-C-EVNVSSCKNLTHLR 155 (430)
Q Consensus 86 e~L~L~~c~~l~~l~l~~~~~L~---~L~l~~c~~~l~~l~i----~~p~L~-~L~l~~~~~~-~-~~~~~~l~~L~~L~ 155 (430)
++|++++|..-....+.++++|+ .|++++|. .+..+.. .+++|+ ++++++..+. . ...+.. ++|+.|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 99999998532211255667777 99999874 4554432 368899 9999883332 1 123344 7899999
Q ss_pred ccCCC-CChHHHHHHhcCC-Cccceecccccccccccccc-ccccceEeccccc
Q 014120 156 LDGLS-ITDKWLYNQISEL-PFLEYLALHYCMKLRSINIS-SPRLKELVFERCE 206 (430)
Q Consensus 156 L~~~~-i~~~~l~~l~~~~-p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~ 206 (430)
+++|. ++. ..+..+.++ +.|+.|+++++ .+..++.. .++|+.|.+.++.
T Consensus 186 L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 186 LNKNKYLTV-IDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CTTCTTCCE-ECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC-
T ss_pred cCCCCCccc-CCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCcc
Confidence 99994 742 113356778 99999999874 34555543 6788999888774
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=3.2e-11 Score=114.32 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=86.7
Q ss_pred CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcC
Q 014120 34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD 113 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~ 113 (430)
.+++|+.|+++++.+.....+..+++|++|+|++|.+++. .. +.++++|++|++++|..-..-.+.++++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 3556666666666554433456666677777766666432 11 55666677776666542211224455666666666
Q ss_pred CCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccc
Q 014120 114 SNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN 191 (430)
Q Consensus 114 ~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~ 191 (430)
+|. +..+. ..+++|+.|++++..+.....+..+++|+.|++++|.+++. +. +..+++|+.|+++++. +..++
T Consensus 121 ~n~--i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~-i~~l~ 194 (291)
T 1h6t_A 121 HNG--ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDLR 194 (291)
T ss_dssp TSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBCG
T ss_pred CCc--CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc-CCCCh
Confidence 654 11111 12455555555552222123455666677777777666431 11 5566667777666542 22222
Q ss_pred c--cccccceEecccc
Q 014120 192 I--SSPRLKELVFERC 205 (430)
Q Consensus 192 ~--~~~~L~~L~l~~c 205 (430)
. ..++|+.|+++++
T Consensus 195 ~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGTTCTTCSEEEEEEE
T ss_pred hhccCCCCCEEECcCC
Confidence 2 1345666666655
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=1e-11 Score=128.33 Aligned_cols=224 Identities=16% Similarity=0.155 Sum_probs=153.6
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
.+++.+++.. +....+|..+..+ +|++|++++|.+..- ....+++|++|++++|.+.... . ...+|+|++|++
T Consensus 282 ~~L~~L~l~~--~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~~~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVS--VTIERVKDFSYNF-GWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEES--CEECSCCBCCSCC-CCSEEEEESCBCSSC-CBCBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEEC
T ss_pred CcccEEEecC--ccchhhhhhhccC-CccEEeeccCccccc-CcccccccCEEeCcCCcccccc-c--cccCCCCCEEeC
Confidence 4566666644 4567899888888 999999999876642 2257899999999999874321 1 168899999999
Q ss_pred eeCCCCC----ccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCC---CceeccCCCCcCceEEccCCCCC
Q 014120 91 NNCPGLK----SLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLE---PCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 91 ~~c~~l~----~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~---~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
++|..-. ...+.++++|++|++++|. ..+......+++|++|++++... +....+.++++|++|++++|.+.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 9875321 1234567999999999875 12222223478999999887222 11235778899999999999874
Q ss_pred hHHHHHHhcCCCccceecccccccc-ccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee----e-E
Q 014120 163 DKWLYNQISELPFLEYLALHYCMKL-RSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----E-S 229 (430)
Q Consensus 163 ~~~l~~l~~~~p~Le~L~L~~c~~l-~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~----~-~ 229 (430)
+ ..+..+.++++|+.|++++|... ..++. ..++|+.|++++| .++.+. + ..++|+.+...++. + .
T Consensus 435 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 435 V-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp E-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred c-cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 3 23455678999999999887643 23432 2578999999998 566542 2 45888888887764 1 1
Q ss_pred EeccccccceeEEE
Q 014120 230 FSSNALALSQTLLC 243 (430)
Q Consensus 230 ~~~~~~sL~~v~l~ 243 (430)
.....++++.+++.
T Consensus 513 ~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 513 IFDRLTSLQKIWLH 526 (570)
T ss_dssp TTTTCTTCCEEECC
T ss_pred HhhcccCCcEEEec
Confidence 11234566666663
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=2.1e-11 Score=122.96 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=79.4
Q ss_pred CceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCC-CCccEEEe
Q 014120 12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC-PLIEYINI 90 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~-p~Le~L~L 90 (430)
.+++++ ++++....+|.. .++|++|+++++.+..-. ..+++|++|++++|.+++ +... ++|++|++
T Consensus 72 ~l~~L~--l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~------l~~~~~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELE--LNNLGLSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLPPLLEYLGV 138 (454)
T ss_dssp TCSEEE--CTTSCCSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCCTTCCEEEC
T ss_pred CCCEEE--ecCCccccCCCC---cCCCCEEEccCCcCCccc--cccCCCcEEECCCCccCc------ccCCCCCCCEEEC
Confidence 345544 444456666652 367888888887665411 234788888888887643 1122 57888888
Q ss_pred eeCCCCCcc-ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 91 NNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
++|.. +.+ .+.++++|++|++++|. +..+....++|++|++++........++++++|+.|++++|.++
T Consensus 139 ~~n~l-~~lp~~~~l~~L~~L~l~~N~--l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 139 SNNQL-EKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CSSCC-SSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred cCCCC-CCCcccCCCCCCCEEECCCCc--CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 87742 222 35566788888887764 22232234577777776622221124556666666666666553
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=2.2e-11 Score=116.55 Aligned_cols=176 Identities=15% Similarity=0.053 Sum_probs=101.2
Q ss_pred CCCCccEEEEcCccCCC--CCCC--CCCCCCCEEEEeeecCChH--HHHHHhc-CCCCccEEEeeeCCC--CCccccCCC
Q 014120 34 YLKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDE--VIRDMVA-GCPLIEYININNCPG--LKSLQLLGL 104 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--~~~~--~~l~~L~~L~Ls~~~~~~~--~l~~l~~-~~p~Le~L~L~~c~~--l~~l~l~~~ 104 (430)
.+++|++|+|+++.+.. |..+ ..+++|++|+|++|.+++. .+..+.. .+++|++|++++|.. +..-.+.++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 56777777777766542 3333 6777777777777776432 1222111 126777777777643 111224455
Q ss_pred CCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCccceeccc
Q 014120 105 NKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALH 182 (430)
Q Consensus 105 ~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L~L~ 182 (430)
++|++|++++|. ....+ ..+....+.++++|++|++++|.++. .....++.++++|+.|+++
T Consensus 173 ~~L~~L~Ls~N~-l~~~~---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 173 PALSTLDLSDNP-ELGER---------------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SSCCEEECCSCT-TCHHH---------------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCCCEEECCCCC-cCcch---------------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 666666666653 10000 00111233778889999999888864 2233466778889999988
Q ss_pred cccccccccc----cccccceEecccccccccccccC-CCcceEEecce
Q 014120 183 YCMKLRSINI----SSPRLKELVFERCEELVEFELDT-PNLSIFKCFNY 226 (430)
Q Consensus 183 ~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i~~-p~L~~~~~~~~ 226 (430)
++.--...+. ..++|+.|+++++ .++.+.-.. ++|+.+...++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N 284 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYN 284 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSS
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCC
Confidence 7653332211 1468888888887 566543111 45666555544
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=1.6e-11 Score=120.98 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=61.0
Q ss_pred ccccCCccccCCCCccEEEEcCccCCC--C----CCCCCCCCCCEEEEeeecCC---h---HH---HHHHhcCCCCccEE
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--P----RSTVTLFSLRKLCLSFVHVD---D---EV---IRDMVAGCPLIEYI 88 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~----~~~~~l~~L~~L~Ls~~~~~---~---~~---l~~l~~~~p~Le~L 88 (430)
....++..+..+++|++|+|++|.+.. + ..+.++++|++|+|++|.+. + .+ +...+..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 456677777778888888888876543 1 23667888888888887442 1 12 22335678888888
Q ss_pred EeeeCCCCC----cc--ccCCCCCcCEEEcCCCc
Q 014120 89 NINNCPGLK----SL--QLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 89 ~L~~c~~l~----~l--~l~~~~~L~~L~l~~c~ 116 (430)
+|++|..-. .+ .+..+++|++|++++|.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 888875321 11 23456778888887764
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.20 E-value=1.9e-10 Score=120.21 Aligned_cols=191 Identities=15% Similarity=0.037 Sum_probs=132.3
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
.+++.|+|. ++....+|. .+++|++|+|++|.+..-.. .+++|++|+|++|.++.- + ..+++|+.|++
T Consensus 61 ~~L~~L~L~--~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l--~---~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIP--DNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL--P---ALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEEC--SCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC--C---CCCTTCCEEEC
T ss_pred CCCcEEEec--CCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC--C---CCCCCcCEEEC
Confidence 456666654 456778886 56899999999998765212 789999999999988541 1 26789999999
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHh
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI 170 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~ 170 (430)
++|. ++.+.. .+++|++|++++|. +..+....++|+.|++++..+. .+. ..+++|+.|++++|.+++ ++
T Consensus 129 ~~N~-l~~lp~-~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~l~-~l~-~~~~~L~~L~Ls~N~l~~--l~--- 197 (622)
T 3g06_A 129 FGNQ-LTSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLT-SLP-MLPSGLQELSVSDNQLAS--LP--- 197 (622)
T ss_dssp CSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCS-CCC-CCCTTCCEEECCSSCCSC--CC---
T ss_pred CCCC-CCcCCC-CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCCCC-CCc-ccCCCCcEEECCCCCCCC--CC---
Confidence 9874 444433 35899999999875 3333334578888888874333 111 456889999999998853 22
Q ss_pred cCCCccceeccccccccccccccccccceEecccccccccccccCCCcceEEecce
Q 014120 171 SELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNY 226 (430)
Q Consensus 171 ~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~ 226 (430)
...++|+.|++++|. +..++...++|+.|++++| .++.+.-..++|+.+...++
T Consensus 198 ~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 198 TLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN 251 (622)
T ss_dssp CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC
Confidence 235788888887653 4555655678888888887 66665544466666665544
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.20 E-value=2.4e-11 Score=117.20 Aligned_cols=207 Identities=19% Similarity=0.145 Sum_probs=125.1
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.+++.|+ +.++....+|+ .+..+++|++|+++++.+.. |..+.++++|++|+|++|.++. ++.. ..++|++
T Consensus 54 ~~l~~L~--l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~--~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLD--LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPN--LPSSLVE 127 (332)
T ss_dssp TTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSS--CCTTCCE
T ss_pred CCCeEEE--CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcc--ccccCCE
Confidence 3555555 44455666654 67779999999999987654 4678899999999999998752 1111 1278999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCc-CC--ceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNR-CG--LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~-~~--l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
|++++|.. +..-.+.++++|++|++++|. .. .....+...+|++|++++.... .....-.++|+.|++++|.++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQ 206 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-SCCSSSCSSCSCCBCCSSCCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-ccCccccCCCCEEECCCCcCC
Confidence 99998753 222235667899999998875 10 1111112226666666662221 011111257777777777764
Q ss_pred hHHHHHHhcCCCccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120 163 DKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 163 ~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~ 227 (430)
+. .+..+.++++|+.|+++++.- ..++. ..++|+.|+++++ .++.+. ...++|+.+...++.
T Consensus 207 ~~-~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 207 AI-ELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CC-CTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred cc-CHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 31 123455677777777765532 22221 2467777777776 555442 234667777666553
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=3.6e-11 Score=107.11 Aligned_cols=146 Identities=14% Similarity=0.200 Sum_probs=85.8
Q ss_pred cCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC--ccccCCCCCcCEE
Q 014120 33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK--SLQLLGLNKLKEI 110 (430)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~--~l~l~~~~~L~~L 110 (430)
..+++|++|+++++.+.....+..+++|++|++++|.++.- ..+..+++|++|++++|..-. .-.+.++++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34677888888887665523677788888888888866432 246678888888888864321 2234556777888
Q ss_pred EcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccccc
Q 014120 111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRS 189 (430)
Q Consensus 111 ~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l~~ 189 (430)
++++|. +.. .....+..+++|+.|++++|. +++ ++ .+.+++.|+.|++++|. +..
T Consensus 118 ~Ls~n~--i~~------------------~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~-i~~ 173 (197)
T 4ezg_A 118 DISHSA--HDD------------------SILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG-VHD 173 (197)
T ss_dssp ECCSSB--CBG------------------GGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC-CCC
T ss_pred EecCCc--cCc------------------HhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC-CcC
Confidence 777764 110 001334555666666666665 432 22 34556666666665543 222
Q ss_pred ccc--cccccceEecccc
Q 014120 190 INI--SSPRLKELVFERC 205 (430)
Q Consensus 190 l~~--~~~~L~~L~l~~c 205 (430)
++. ..++|+.|+++++
T Consensus 174 ~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CTTGGGCSSCCEEEECBC
T ss_pred hHHhccCCCCCEEEeeCc
Confidence 211 1355666666554
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=9.1e-12 Score=119.24 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=118.2
Q ss_pred hCCceEEEEEecCCccc-cCCccc--cCCCCccEEEEcCccCCC-CCCCCCC-----CCCCEEEEeeecCChHHHHHHhc
Q 014120 10 ASNVKELKLDVGCCRIY-NLPQIV--FYLKSIYVLDFEFCKLEP-PRSTVTL-----FSLRKLCLSFVHVDDEVIRDMVA 80 (430)
Q Consensus 10 ~~~v~~L~L~~~~~~~~-~LP~~l--~~~~~L~~L~Ls~~~~~~-~~~~~~l-----~~L~~L~Ls~~~~~~~~l~~l~~ 80 (430)
-.++++|+|... ... .+|..+ ..+++|++|+|+++.+.. |..+..+ ++|++|+|++|.++... ...+.
T Consensus 94 l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENL--EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQVR 170 (312)
T ss_dssp TSCCCEEEEEEE--BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTCC
T ss_pred cCCccEEEccCC--cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHhc
Confidence 457788877664 343 678776 679999999999987654 4444455 99999999999985431 24577
Q ss_pred CCCCccEEEeeeCCCCCc------cccCCCCCcCEEEcCCCc-CCceEeE----eeccceeEEEeecCCCCc---eeccC
Q 014120 81 GCPLIEYININNCPGLKS------LQLLGLNKLKEIKLDSNR-CGLERVY----INGVNVHSVDIKVYLEPC---EVNVS 146 (430)
Q Consensus 81 ~~p~Le~L~L~~c~~l~~------l~l~~~~~L~~L~l~~c~-~~l~~l~----i~~p~L~~L~l~~~~~~~---~~~~~ 146 (430)
++++|++|++++|..... ..+.++++|++|++++|. ..+..+. ...++|++|++++..+.. ...+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 899999999999874322 223678999999999875 1111111 123677777776632221 12344
Q ss_pred CCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc--cccccceEecccc
Q 014120 147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERC 205 (430)
Q Consensus 147 ~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c 205 (430)
.+++|+.|++++|.++ .++..+. ++|+.|++++++ +..++. ..++|+.|+++++
T Consensus 251 ~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred hcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence 5567777777777764 2332222 567777776543 232222 2355666666554
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=3.3e-11 Score=112.81 Aligned_cols=170 Identities=20% Similarity=0.204 Sum_probs=105.4
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.++++|+| +++....+|+ .+..+++|++|+++++.+.. + ..+.++++|++|+|++|.++... ...+.++++|++
T Consensus 37 ~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDL--QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEEC--CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEEC--cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 35666654 4456677776 56679999999999987654 3 45688999999999999885421 235678999999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW 165 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~ 165 (430)
|++++|.. +..-.+.++++|++|++++|. +..+ + ...+.++++|+.|++++|.++. .
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~-----------------~-~~~~~~l~~L~~L~L~~n~l~~-~ 172 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSL-----------------P-KGVFDKLTSLKELRLYNNQLKR-V 172 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCC-----------------C-TTTTTTCTTCCEEECCSSCCSC-C
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCcc-----------------C-HhHccCCcccceeEecCCcCcE-e
Confidence 99999753 222235567899999998874 2111 1 1224455566666666655532 1
Q ss_pred HHHHhcCCCccceeccccccccccccc----cccccceEecccc
Q 014120 166 LYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC 205 (430)
Q Consensus 166 l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c 205 (430)
.+..+.++++|+.|+++++. +..++. ..++|+.|+++++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCC
Confidence 11124455566666665442 222222 1345556665554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=2.3e-11 Score=114.03 Aligned_cols=163 Identities=18% Similarity=0.111 Sum_probs=73.5
Q ss_pred CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcCEEE
Q 014120 35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIK 111 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~ 111 (430)
+++|+.|+++++.+.....+..+++|++|+|++|.+++- ..+..+++|++|++++|.. +.+ .+.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEE
Confidence 444555555554443333344455555555555544321 1234445555555554421 111 123344555555
Q ss_pred cCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120 112 LDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (430)
Q Consensus 112 l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~ 185 (430)
+++|. +..+. -.+++|++|++++..+. ....+.++++|+.|++++|.+++ ..+..+.+++.|+.|+++++.
T Consensus 116 L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 116 LVENQ--LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc--CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc
Confidence 55443 11111 11345555555442111 11224556666666666666642 112234556666666666543
Q ss_pred ccccccc----cccccceEecccc
Q 014120 186 KLRSINI----SSPRLKELVFERC 205 (430)
Q Consensus 186 ~l~~l~~----~~~~L~~L~l~~c 205 (430)
- ..++. ..++|+.|+++++
T Consensus 193 l-~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 193 L-KSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp C-SCCCTTTTTTCTTCCEEECCSS
T ss_pred C-CccCHHHHhCCcCCCEEEccCC
Confidence 2 22221 1356666666655
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=5e-11 Score=113.00 Aligned_cols=164 Identities=17% Similarity=0.155 Sum_probs=123.4
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
..++.+++ ..+....+| .+..+++|++|+++++.+.....+.++++|++|+|++|.+++- + .+..+++|++|++
T Consensus 46 ~~L~~L~l--~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIA--NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G-GGTTCTTCCEEEC
T ss_pred CcccEEEc--cCCCcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--h-hhccCCCCCEEEC
Confidence 34555554 445566776 4778999999999999876633388999999999999998652 2 2789999999999
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~ 168 (430)
++|..-..-.+..+++|+.|++++|. +..+. ..+++|+.|++++..+.....+..+++|+.|++++|.+++ ++.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~--l~~ 195 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CGG
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCc--CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC--Chh
Confidence 99853222245667999999999875 33221 2368999999998433322238889999999999999965 333
Q ss_pred HhcCCCccceecccccc
Q 014120 169 QISELPFLEYLALHYCM 185 (430)
Q Consensus 169 l~~~~p~Le~L~L~~c~ 185 (430)
+..+++|+.|++++++
T Consensus 196 -l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GTTCTTCSEEEEEEEE
T ss_pred -hccCCCCCEEECcCCc
Confidence 6789999999998764
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.18 E-value=4.5e-11 Score=112.09 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=116.1
Q ss_pred CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcCEEEcCCCcCCceEeE----eecccee
Q 014120 58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVH 130 (430)
Q Consensus 58 ~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~ 130 (430)
++|++|+|++|.++... ...+.++++|++|++++|. ++.+ .+.++++|++|++++|. +..+. ..+++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc--cCccChhhhcCCcccc
Confidence 57999999999885432 2256789999999999984 3332 35678999999999874 44332 2368999
Q ss_pred EEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-c---ccccc----eE
Q 014120 131 SVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-S---SPRLK----EL 200 (430)
Q Consensus 131 ~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-~---~~~L~----~L 200 (430)
+|++++.... ....+.++++|++|++++|.+++..++..+.++++|+.|+++++.. ..++. . ..+|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHHHhhhhhhccccceee
Confidence 9999873222 1335788999999999999986544566788899999999987653 22221 1 23454 78
Q ss_pred eccccccccccc---ccCCCcceEEeccee
Q 014120 201 VFERCEELVEFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 201 ~l~~c~~L~~~~---i~~p~L~~~~~~~~~ 227 (430)
+++++ .++.+. +..++|+.+...++.
T Consensus 183 ~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 183 DLSLN-PMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp ECCSS-CCCEECTTSSCSCCEEEEECCSSC
T ss_pred ecCCC-cccccCccccCCCcccEEECCCCc
Confidence 88877 555443 444578888777664
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.16 E-value=4.6e-11 Score=110.53 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=101.5
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++..+.....+|..+. ++++.|+|+++.+.. +..+.++++|++|+|++|.++... ...+.++++|++|++++|..
T Consensus 19 l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcc
Confidence 4555566788887764 689999999987654 456889999999999999885421 33467889999999998753
Q ss_pred --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH-HHhcC
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY-NQISE 172 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~-~l~~~ 172 (430)
+..-.+.++++|++|++++|. +..+ + ...+.++++|+.|+|++|.+++ ++ ..+.+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~--l~~~-----------------~-~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~ 153 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQ--LKSL-----------------P-SGVFDRLTKLKELRLNTNQLQS--IPAGAFDK 153 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC--CCCC-----------------C-TTTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCc--CCCc-----------------C-hhHhccCCcccEEECcCCcCCc--cCHHHcCc
Confidence 222234567888888888764 2111 1 1224455566666666665532 22 23445
Q ss_pred CCccceeccccccccccccc----cccccceEecccc
Q 014120 173 LPFLEYLALHYCMKLRSINI----SSPRLKELVFERC 205 (430)
Q Consensus 173 ~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c 205 (430)
+++|+.|+++++. +..++. ..++|+.|+++++
T Consensus 154 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 154 LTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 5666666665443 222221 1345666666655
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=5.7e-11 Score=123.89 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=73.8
Q ss_pred ccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCC
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLG 103 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~ 103 (430)
....+| .+..+++|+.|+|++|.+.....+..+++|+.|+|++|.+++- + .+..+++|+.|+|++|..-..-.+.+
T Consensus 54 ~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~ 129 (605)
T 1m9s_A 54 DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVH 129 (605)
T ss_dssp CCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGG
T ss_pred CCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccC
Confidence 344444 3455666666666665544322255566666666666655331 1 24455666666666554221122344
Q ss_pred CCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120 104 LNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL 181 (430)
Q Consensus 104 ~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L 181 (430)
+++|+.|++++|. +..+. -.+++|+.|++++..+.....+..+++|+.|+|++|.+++ ++ .+..+++|+.|++
T Consensus 130 l~~L~~L~Ls~N~--l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L 204 (605)
T 1m9s_A 130 LPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLEL 204 (605)
T ss_dssp CTTCSEEECCSSC--CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEC
T ss_pred CCccCEEECCCCc--cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEc
Confidence 5566666666553 11111 1245555555555222211124555555555555555533 11 2445555555555
Q ss_pred ccc
Q 014120 182 HYC 184 (430)
Q Consensus 182 ~~c 184 (430)
++|
T Consensus 205 ~~N 207 (605)
T 1m9s_A 205 FSQ 207 (605)
T ss_dssp CSE
T ss_pred cCC
Confidence 544
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.15 E-value=2.4e-11 Score=119.73 Aligned_cols=215 Identities=18% Similarity=0.168 Sum_probs=142.7
Q ss_pred CCceEEEEEecC---CccccCCccccCCCCccEEEEcCccCCC-----CCC-------CCCCCCCCEEEEeeecCChH--
Q 014120 11 SNVKELKLDVGC---CRIYNLPQIVFYLKSIYVLDFEFCKLEP-----PRS-------TVTLFSLRKLCLSFVHVDDE-- 73 (430)
Q Consensus 11 ~~v~~L~L~~~~---~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-----~~~-------~~~l~~L~~L~Ls~~~~~~~-- 73 (430)
..++.|+|..+. .....++..+..+++|++|+|++|.... |.. +.++++|++|+|++|.+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456666653321 1122355557779999999999974331 212 36889999999999999653
Q ss_pred -HHHHHhcCCCCccEEEeeeCCCC----Cccc--cCCC---------CCcCEEEcCCCcC---CceEe---EeeccceeE
Q 014120 74 -VIRDMVAGCPLIEYININNCPGL----KSLQ--LLGL---------NKLKEIKLDSNRC---GLERV---YINGVNVHS 131 (430)
Q Consensus 74 -~l~~l~~~~p~Le~L~L~~c~~l----~~l~--l~~~---------~~L~~L~l~~c~~---~l~~l---~i~~p~L~~ 131 (430)
.+...+..+++|++|+|++|..- ..+. +..+ ++|++|++++|.- .+..+ -..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 45667789999999999998631 1110 1222 7999999998751 11111 113678999
Q ss_pred EEeecCCCC-------ceeccCCCCcCceEEccCCCCCh---HHHHHHhcCCCccceecccccccccc----ccc-----
Q 014120 132 VDIKVYLEP-------CEVNVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYCMKLRS----INI----- 192 (430)
Q Consensus 132 L~l~~~~~~-------~~~~~~~l~~L~~L~L~~~~i~~---~~l~~l~~~~p~Le~L~L~~c~~l~~----l~~----- 192 (430)
|++++..+. .+..+..+++|+.|+|++|.+++ ..++..+..+++|+.|++++|.--.. ++.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 999883332 01156788899999999999865 44566778899999999987763211 121
Q ss_pred cccccceEeccccccccc-----cc--c-c-CCCcceEEecce
Q 014120 193 SSPRLKELVFERCEELVE-----FE--L-D-TPNLSIFKCFNY 226 (430)
Q Consensus 193 ~~~~L~~L~l~~c~~L~~-----~~--i-~-~p~L~~~~~~~~ 226 (430)
..++|+.|++++| .++. +. + . .|+|+++...++
T Consensus 272 ~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 272 ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 1578999999988 5554 32 2 2 377777776654
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=5.6e-11 Score=111.39 Aligned_cols=185 Identities=16% Similarity=0.083 Sum_probs=128.6
Q ss_pred hCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120 10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 10 ~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~ 89 (430)
-..++++.+ .++....+| .+..+++|++|+++++.+.....+.++++|++|+|++|.++.. ....+.++++|++|+
T Consensus 40 l~~L~~L~l--~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIA--NNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeee--CCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 345655554 334455555 5778999999999998876655678899999999999988542 133467889999999
Q ss_pred eeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCC
Q 014120 90 INNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 90 L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i 161 (430)
+++|.. +..-.+.++++|++|++++|. +..+. -.+++|++|++++..+. ....+.++++|+.|++++|.+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQ--LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCc--cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 998753 222225667899999999875 33332 23689999999883332 123367889999999999988
Q ss_pred ChHHHHHHhcCCCccceeccccccccccccccccccceEecccc
Q 014120 162 TDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERC 205 (430)
Q Consensus 162 ~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c 205 (430)
++ ..+..+..+++|+.|++++++.. ..+++|+.+++..+
T Consensus 194 ~~-~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 194 KS-VPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWIN 232 (272)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHHH
T ss_pred Cc-cCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHHH
Confidence 54 22345678899999999876532 22445666655544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=116.45 Aligned_cols=189 Identities=15% Similarity=0.098 Sum_probs=124.5
Q ss_pred CCCCccEEEEcCccCCC--CCCC--CCCCCCCEEEEeeecCChHH--H-HHHhcCCCCccEEEeeeCCCC--CccccCCC
Q 014120 34 YLKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDEV--I-RDMVAGCPLIEYININNCPGL--KSLQLLGL 104 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--~~~~--~~l~~L~~L~Ls~~~~~~~~--l-~~l~~~~p~Le~L~L~~c~~l--~~l~l~~~ 104 (430)
..++|++|++++|.+.. |..+ .++++|++|+|++|.+++.. + ...+..+++|++|++++|..- ..-.+.++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35679999999987543 4444 78899999999999885411 1 123447889999999987642 22234567
Q ss_pred CCcCEEEcCCCcCCceE--e---E--eeccceeEEEeecCCCCc-ee----ccCCCCcCceEEccCCCCChHHHHHHhcC
Q 014120 105 NKLKEIKLDSNRCGLER--V---Y--INGVNVHSVDIKVYLEPC-EV----NVSSCKNLTHLRLDGLSITDKWLYNQISE 172 (430)
Q Consensus 105 ~~L~~L~l~~c~~~l~~--l---~--i~~p~L~~L~l~~~~~~~-~~----~~~~l~~L~~L~L~~~~i~~~~l~~l~~~ 172 (430)
++|++|++++|. .... + . ...++|++|++++..+.. .. -+..+++|++|+|++|.+++. .+..+..
T Consensus 169 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPR 246 (310)
T ss_dssp TTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSS
T ss_pred CCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHh
Confidence 889999998875 2211 1 1 246788888888733321 11 135778999999999988542 1222334
Q ss_pred C---Cccceecccccccccccccc-ccccceEeccccccccccc--ccCCCcceEEecce
Q 014120 173 L---PFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY 226 (430)
Q Consensus 173 ~---p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~ 226 (430)
+ ++|+.|+++++. +..++.. .++|+.|+++++ .++.+. -..|+|+.+...++
T Consensus 247 ~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 247 CMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred ccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence 4 799999997654 3455443 478999999988 666543 24477777766654
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.13 E-value=1.1e-10 Score=110.46 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=100.2
Q ss_pred EecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (430)
Q Consensus 19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l 96 (430)
+...+....+|..+. ++++.|+|+++.+.. +..+.++++|++|+|++|.++... . ...+++|+.|+++++..
T Consensus 16 ~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l- 89 (290)
T 1p9a_G 16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLDLSHNQL- 89 (290)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEECCSSCC-
T ss_pred ECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEECCCCcC-
Confidence 334445566665553 567777777766543 345667777777777777664321 1 14667777777776532
Q ss_pred Ccc--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCC
Q 014120 97 KSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELP 174 (430)
Q Consensus 97 ~~l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p 174 (430)
+.+ .+.++++|+.|++++|. +.. .+ ...+.++++|+.|++++|.++. ..+..+..++
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~--l~~-----------------l~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 148 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNR--LTS-----------------LP-LGALRGLGELQELYLKGNELKT-LPPGLLTPTP 148 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSC--CCC-----------------CC-SSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT
T ss_pred CcCchhhccCCCCCEEECCCCc--Ccc-----------------cC-HHHHcCCCCCCEEECCCCCCCc-cChhhccccc
Confidence 222 12344566666665543 110 11 2346677777888887777742 1122455677
Q ss_pred ccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEecce
Q 014120 175 FLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNY 226 (430)
Q Consensus 175 ~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~ 226 (430)
+|+.|+++++. +..++. ..++|+.|+++++ .++.+. +..++++.+...|+
T Consensus 149 ~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 149 KLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 77777776543 334432 2467777777776 555443 33445555544443
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.13 E-value=2.3e-11 Score=116.70 Aligned_cols=167 Identities=12% Similarity=0.072 Sum_probs=100.7
Q ss_pred CCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---cc-CCCCCcCEEE
Q 014120 36 KSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QL-LGLNKLKEIK 111 (430)
Q Consensus 36 ~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l-~~~~~L~~L~ 111 (430)
++|++|+++++.+... ....+++|++|++++|.++... +..+..+++|++|++++|.. +.. .+ .++++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCc-CccccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEE
Confidence 6777888877765541 1234677888888888775421 22345677888888887643 221 12 2457788888
Q ss_pred cCCCcCCceEeE--eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccc-
Q 014120 112 LDSNRCGLERVY--INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL- 187 (430)
Q Consensus 112 l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l- 187 (430)
+++|. +..+. ...++|++|++++..+. .+..+..+++|+.|++++|.++ .++..+..++.|+.|++++++..
T Consensus 176 L~~N~--l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 176 LQYNF--IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTSC--CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBH
T ss_pred CCCCc--CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccC
Confidence 87764 33332 23677888887773332 2234667778888888888774 34445667778888888765433
Q ss_pred cccc---ccccccceEecccccccc
Q 014120 188 RSIN---ISSPRLKELVFERCEELV 209 (430)
Q Consensus 188 ~~l~---~~~~~L~~L~l~~c~~L~ 209 (430)
..++ ...++|+.+++.++..++
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhccccceEEECCCchhcc
Confidence 1221 124566666666554443
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=5.9e-11 Score=110.80 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=61.7
Q ss_pred CccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-cc
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QL 101 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l 101 (430)
+....+| .+..+++|++|+++++.+.....+..+++|++|+|++|.+++.. . +.++++|+.|++++|.. +.+ .+
T Consensus 29 ~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l-~~l~~~ 103 (263)
T 1xeu_A 29 QSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRL-KNLNGI 103 (263)
T ss_dssp SCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCC-SCCTTC
T ss_pred CCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCcc-CCcCcc
Confidence 3444555 45568889999999887665346778899999999998885532 2 77888999999988743 222 22
Q ss_pred CCCCCcCEEEcCCCc
Q 014120 102 LGLNKLKEIKLDSNR 116 (430)
Q Consensus 102 ~~~~~L~~L~l~~c~ 116 (430)
.. ++|++|++++|.
T Consensus 104 ~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNE 117 (263)
T ss_dssp CC-SSCCEEECCSSC
T ss_pred cc-CcccEEEccCCc
Confidence 22 777888877764
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=1.6e-10 Score=120.57 Aligned_cols=164 Identities=17% Similarity=0.120 Sum_probs=126.1
Q ss_pred cCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEc
Q 014120 33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL 112 (430)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l 112 (430)
..+++|+.|+++++.+.....+..+++|+.|+|++|.+++.. . +..+++|+.|+|++|..-..-.+..+++|+.|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 457889999999988766557889999999999999985532 2 7899999999999985322224667899999999
Q ss_pred CCCcCCceEe--EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc
Q 014120 113 DSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI 190 (430)
Q Consensus 113 ~~c~~~l~~l--~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l 190 (430)
++|. +..+ ...+++|+.|++++..+.....+..+++|+.|+|++|.+.+. .. +..+++|+.|+|++|. +..+
T Consensus 117 s~N~--l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~l 190 (605)
T 1m9s_A 117 EHNG--ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL 190 (605)
T ss_dssp TTSC--CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC
T ss_pred cCCC--CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCC-CCCC
Confidence 9886 2222 123789999999984443235678899999999999999652 22 7889999999998764 3334
Q ss_pred cc--cccccceEecccc
Q 014120 191 NI--SSPRLKELVFERC 205 (430)
Q Consensus 191 ~~--~~~~L~~L~l~~c 205 (430)
+. ..++|+.|++++|
T Consensus 191 ~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGGTTCTTCSEEECCSE
T ss_pred hHHccCCCCCEEEccCC
Confidence 32 2578999999987
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.09 E-value=6.6e-11 Score=113.05 Aligned_cols=190 Identities=12% Similarity=0.012 Sum_probs=127.2
Q ss_pred CCCccEEEEcCccCCCC-----CCCCCCCCCCEEEEeeecCChHHHHHHh-cCCCCccEEEeeeCCCCC------ccccC
Q 014120 35 LKSIYVLDFEFCKLEPP-----RSTVTLFSLRKLCLSFVHVDDEVIRDMV-AGCPLIEYININNCPGLK------SLQLL 102 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~-----~~~~~l~~L~~L~Ls~~~~~~~~l~~l~-~~~p~Le~L~L~~c~~l~------~l~l~ 102 (430)
...++.+.+.++.+... ..+..+++|++|+|++|.+++.....++ ..+++|++|++++|..-. ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 44578888888765431 1223467799999999987543212222 778999999999986422 13345
Q ss_pred CCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC------ceeccCCCCcCceEEccCCCCCh--HHHHHHh
Q 014120 103 GLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP------CEVNVSSCKNLTHLRLDGLSITD--KWLYNQI 170 (430)
Q Consensus 103 ~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~------~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~ 170 (430)
++++|++|++++|. +..+ .-..++|++|++++.... ....+..+++|++|++++|.++. .....++
T Consensus 143 ~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAH--SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCS--SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCC--cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 67899999999875 2222 124689999999884321 12234678899999999999963 2223356
Q ss_pred cCCCccceeccccccccccccc---c---ccccceEecccccccccccc-cCCCcceEEeccee
Q 014120 171 SELPFLEYLALHYCMKLRSINI---S---SPRLKELVFERCEELVEFEL-DTPNLSIFKCFNYV 227 (430)
Q Consensus 171 ~~~p~Le~L~L~~c~~l~~l~~---~---~~~L~~L~l~~c~~L~~~~i-~~p~L~~~~~~~~~ 227 (430)
.+++.|+.|+++++.--...+. . .++|++|+++++ .++.+.- -.++|+.+...++.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNR 283 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCc
Confidence 7889999999987653332221 1 268999999988 6765541 13788888887665
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.07 E-value=3.5e-10 Score=109.95 Aligned_cols=202 Identities=16% Similarity=0.107 Sum_probs=136.2
Q ss_pred EecCCccccCCccccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (430)
Q Consensus 19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l 96 (430)
+-++.....+|..+ .+++++|+|+++.+.. | ..|.++++|++|+|++|.+.+..-...+.++++++++...++..+
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 34445677888776 4689999999987654 3 568999999999999998633211234678888888777666666
Q ss_pred Ccc---ccCCCCCcCEEEcCCCc-CCceEe-EeeccceeEEEeec-CCCC--ceeccCCC-CcCceEEccCCCCChHHHH
Q 014120 97 KSL---QLLGLNKLKEIKLDSNR-CGLERV-YINGVNVHSVDIKV-YLEP--CEVNVSSC-KNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 97 ~~l---~l~~~~~L~~L~l~~c~-~~l~~l-~i~~p~L~~L~l~~-~~~~--~~~~~~~l-~~L~~L~L~~~~i~~~~l~ 167 (430)
+.+ .+.++++|++|+++++. ..+... ......+..+.+.+ ..+. ....+.++ ..++.|++++|.++ .++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~ 170 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIH 170 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EEC
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCC
Confidence 655 35667999999998875 222221 22345667777765 2222 12234555 46889999999984 344
Q ss_pred HHhcCCCccceecccccccccccccc----ccccceEeccccccccccccc-CCCcceEEecc
Q 014120 168 NQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFELD-TPNLSIFKCFN 225 (430)
Q Consensus 168 ~l~~~~p~Le~L~L~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~i~-~p~L~~~~~~~ 225 (430)
..+...+.|+.|++.+++.++.++.. .++|+.|+++++ .++.+... ..++..+...+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTT
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhcc
Confidence 43445678999999888888877652 578999999988 67766532 24555555433
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=8.4e-10 Score=98.11 Aligned_cols=147 Identities=22% Similarity=0.294 Sum_probs=108.5
Q ss_pred CCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEcCCCcCCceEeEeeccceeEE
Q 014120 54 TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSV 132 (430)
Q Consensus 54 ~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L 132 (430)
...+++|++|++++|.+++- + -+..+++|++|++++| .++.+ .+.++++|++|++++|. +.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~--l~------------ 101 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL--T-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD--VT------------ 101 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT--CB------------
T ss_pred hhhcCCccEEeccCCCccCh--H-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc--cC------------
Confidence 36789999999999988642 2 3778999999999998 44433 45667788888877664 10
Q ss_pred EeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc--cccccceEeccccccccc
Q 014120 133 DIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELVE 210 (430)
Q Consensus 133 ~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~ 210 (430)
......+.++++|++|++++|.+++. .+..+..+++|+.|++++|..+..++. ..++|+.|++++| .+++
T Consensus 102 ------~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~ 173 (197)
T 4ezg_A 102 ------SDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHD 173 (197)
T ss_dssp ------GGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCC
T ss_pred ------cccChhhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcC
Confidence 00135577899999999999999753 345667899999999998876666653 2578999999998 6665
Q ss_pred cc--ccCCCcceEEecce
Q 014120 211 FE--LDTPNLSIFKCFNY 226 (430)
Q Consensus 211 ~~--i~~p~L~~~~~~~~ 226 (430)
+. -..|+|+.+...|+
T Consensus 174 ~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CTTGGGCSSCCEEEECBC
T ss_pred hHHhccCCCCCEEEeeCc
Confidence 53 24577777777665
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=1.2e-10 Score=110.28 Aligned_cols=168 Identities=20% Similarity=0.197 Sum_probs=107.2
Q ss_pred CCceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120 11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~ 89 (430)
.+++.|+ ++++....++ ..+..+++|++|+|+++.+........+++|++|+|++|.++. ++..+.++++|+.|+
T Consensus 31 ~~l~~L~--L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILH--LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEE--CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred CCCCEEE--cCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence 4566555 4445555664 4577799999999999887652234789999999999998853 344567899999999
Q ss_pred eeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH
Q 014120 90 INNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY 167 (430)
Q Consensus 90 L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~ 167 (430)
+++|.. +..-.+.++++|++|++++|. +..+ + ...+..+++|+.|+|++|.++ .++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~-----------------~-~~~~~~l~~L~~L~L~~N~l~--~l~ 164 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNE--LKTL-----------------P-PGLLTPTPKLEKLSLANNNLT--ELP 164 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCC-----------------C-TTTTTTCTTCCEEECTTSCCS--CCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCC--CCcc-----------------C-hhhcccccCCCEEECCCCcCC--ccC
Confidence 999753 222235667889999998875 2111 1 123455666666666666663 222
Q ss_pred -HHhcCCCccceecccccccccccccc---ccccceEecccc
Q 014120 168 -NQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC 205 (430)
Q Consensus 168 -~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c 205 (430)
..+.++++|+.|+++++. +..++.. ..+|+.+.+.++
T Consensus 165 ~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred HHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 234556666666665433 2333322 345666666654
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.03 E-value=2.8e-09 Score=111.13 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=95.4
Q ss_pred CccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL- 99 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l- 99 (430)
.....+|..+ ..++++|+|+++.+.. +..|.++++|++|+|++|.++.-. +..+.++++|++|+|++|. ++.+
T Consensus 41 ~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~ 116 (635)
T 4g8a_A 41 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLA 116 (635)
T ss_dssp SCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred CCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCC
Confidence 3566777654 3579999999987654 467899999999999999885321 2357789999999999974 4443
Q ss_pred --ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccc
Q 014120 100 --QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE 177 (430)
Q Consensus 100 --~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le 177 (430)
.+.++++|++|++++|. +.. ++ ...++++++|++|++++|.++...++..+.+++.|+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~--l~~-----------------l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN--LAS-----------------LE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC--CCC-----------------ST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred HHHhcCCCCCCEEECCCCc--CCC-----------------CC-hhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 35678889999998875 111 11 234566777777777777664433445556677777
Q ss_pred eeccccc
Q 014120 178 YLALHYC 184 (430)
Q Consensus 178 ~L~L~~c 184 (430)
.|+++++
T Consensus 177 ~L~L~~N 183 (635)
T 4g8a_A 177 HLDLSSN 183 (635)
T ss_dssp EEECCSS
T ss_pred hhcccCc
Confidence 7777654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.02 E-value=6.4e-10 Score=99.65 Aligned_cols=138 Identities=16% Similarity=0.102 Sum_probs=85.1
Q ss_pred EecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG- 95 (430)
Q Consensus 19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~- 95 (430)
+........+|..+ .++|++|+++++.+.. +..+.++++|++|+|++|.++.. ....+.++++|++|++++|..
T Consensus 13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp ECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred EecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCC
Confidence 44445567777665 4589999999987654 34578899999999999988532 123467889999999998742
Q ss_pred -CCccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCC
Q 014120 96 -LKSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 96 -l~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i 161 (430)
+..-.+.++++|++|+++++. +..+. -..++|++|++++..+. ....+..+++|+.|++++|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQ--LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHhHhcCccCCCEEEcCCCc--CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 222224567888999888764 22211 12345555555442111 011244455555555555544
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.01 E-value=2.5e-10 Score=111.50 Aligned_cols=177 Identities=13% Similarity=0.082 Sum_probs=100.7
Q ss_pred CccccCCCCccEEEEcCccCCC-C-----CCCCCCC-CCCEEEEeeecCCh---HHHHHHhcCC-CCccEEEeeeCCCCC
Q 014120 29 PQIVFYLKSIYVLDFEFCKLEP-P-----RSTVTLF-SLRKLCLSFVHVDD---EVIRDMVAGC-PLIEYININNCPGLK 97 (430)
Q Consensus 29 P~~l~~~~~L~~L~Ls~~~~~~-~-----~~~~~l~-~L~~L~Ls~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~l~ 97 (430)
|..+...++|++|+|++|.+.. + ..+.+++ +|++|+|++|.+++ ..+...+... ++|++|++++|.. +
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-S 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-G
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC-C
Confidence 4333345669999999987654 1 3456788 89999999998854 3444455544 8999999998862 2
Q ss_pred ccc-------cCCC-CCcCEEEcCCCcCCceEeEe-------e--ccceeEEEeecCCCC--c----eeccCCCC-cCce
Q 014120 98 SLQ-------LLGL-NKLKEIKLDSNRCGLERVYI-------N--GVNVHSVDIKVYLEP--C----EVNVSSCK-NLTH 153 (430)
Q Consensus 98 ~l~-------l~~~-~~L~~L~l~~c~~~l~~l~i-------~--~p~L~~L~l~~~~~~--~----~~~~~~l~-~L~~ 153 (430)
... +..+ ++|++|++++|. +..... . .++|++|++++..+. . ...+..++ +|++
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 111 2334 788899988875 222211 0 236666666652221 0 01122333 6777
Q ss_pred EEccCCCCCh---HHHHHHhcCCC-ccceeccccccccc----cccc----cccccceEecccccccc
Q 014120 154 LRLDGLSITD---KWLYNQISELP-FLEYLALHYCMKLR----SINI----SSPRLKELVFERCEELV 209 (430)
Q Consensus 154 L~L~~~~i~~---~~l~~l~~~~p-~Le~L~L~~c~~l~----~l~~----~~~~L~~L~l~~c~~L~ 209 (430)
|+|++|.+++ ..+...+..+| .|+.|++++|.--. .++. ..++|+.|++++| .++
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 238 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLH 238 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCC
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCC
Confidence 7777776654 23344445553 67777776554211 0111 1246667776666 443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.98 E-value=8.6e-10 Score=100.60 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=89.3
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++........+|..+. ++|++|+|+++.+.. +..+.++++|++|+|++|.++.-. ...+.++++|+.|+|++|.
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~- 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ- 99 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-
Confidence 3445556778887654 889999999987654 466888999999999999874321 2346788899999998874
Q ss_pred CCcc---ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH-HHhc
Q 014120 96 LKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY-NQIS 171 (430)
Q Consensus 96 l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~-~l~~ 171 (430)
++.+ .+.++++|+.|+++++. +.. + +..+..+++|+.|++++|.++. ++ ..+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~--l~~-----------------l--p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~ 156 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK--LTE-----------------L--PRGIERLTHLTHLALDQNQLKS--IPHGAFD 156 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC--CCS-----------------C--CTTGGGCTTCSEEECCSSCCCC--CCTTTTT
T ss_pred CCccChhHhCcchhhCeEeccCCc--ccc-----------------c--CcccccCCCCCEEECCCCcCCc--cCHHHHh
Confidence 3332 24456788888887764 111 1 1334555666666666666532 21 2344
Q ss_pred CCCccceecccc
Q 014120 172 ELPFLEYLALHY 183 (430)
Q Consensus 172 ~~p~Le~L~L~~ 183 (430)
.++.|+.|++.+
T Consensus 157 ~l~~L~~L~l~~ 168 (229)
T 3e6j_A 157 RLSSLTHAYLFG 168 (229)
T ss_dssp TCTTCCEEECTT
T ss_pred CCCCCCEEEeeC
Confidence 555666665554
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.98 E-value=9.2e-10 Score=99.80 Aligned_cols=142 Identities=17% Similarity=0.161 Sum_probs=93.1
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++..++....+|..+. ++++.|+++++.+.. +..+.++++|++|+|++|.++... +..+.++++|++|+|++|..
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC
Confidence 4555566788887664 789999999987654 357888999999999999885421 34577889999999998742
Q ss_pred --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCC
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISEL 173 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~ 173 (430)
+..-.+.++++|+.|++++|. +.. . .+..+.++++|+.|+|++|.++.- .+..+..+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~--l~~-----------------~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l 151 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK--INC-----------------L-RVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPL 151 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC--CCC-----------------C-CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTC
T ss_pred CccCHhHccCCCCCCEEECCCCC--CCE-----------------e-CHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCC
Confidence 222224566788888887764 111 1 023455666777777777766321 11234456
Q ss_pred Cccceecccc
Q 014120 174 PFLEYLALHY 183 (430)
Q Consensus 174 p~Le~L~L~~ 183 (430)
+.|+.|++++
T Consensus 152 ~~L~~L~L~~ 161 (220)
T 2v9t_B 152 RAIQTMHLAQ 161 (220)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEeCC
Confidence 6666666654
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.95 E-value=1.9e-09 Score=93.05 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCccEEEEcCccCC---CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCE
Q 014120 35 LKSIYVLDFEFCKLE---PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKE 109 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~ 109 (430)
.++|++|++++|.+. .|..+..+++|++|+|++|.++.. ..+..+++|++|++++|..-..+ .+.++++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 366777777777654 244456777777777777776443 34566777777777776532211 1123567777
Q ss_pred EEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH--HHHHHhcCCCccceeccccccc
Q 014120 110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLALHYCMK 186 (430)
Q Consensus 110 L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~--~l~~l~~~~p~Le~L~L~~c~~ 186 (430)
|++++|. +. ..+....+..+++|+.|++++|.+++. .....+..+|+|+.|++++|..
T Consensus 100 L~Ls~N~--l~-----------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNK--LK-----------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSS--CC-----------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCc--cC-----------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777654 10 111114567788999999999988542 1124778899999999987753
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=9.3e-10 Score=95.06 Aligned_cols=127 Identities=21% Similarity=0.138 Sum_probs=78.6
Q ss_pred CceEEEEEecCCccc--cCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120 12 NVKELKLDVGCCRIY--NLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~--~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~ 89 (430)
.+++|++.. +... .+|..+..+++|++|++++|.+.....+..+++|++|+|++|.++.. ++..+.++++|+.|+
T Consensus 25 ~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred cCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence 455555433 3344 67766667777888888877655445667777888888888777543 345566677888888
Q ss_pred eeeCCCCCc----cccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCc--eeccCCCCcCceEEccCCCC
Q 014120 90 INNCPGLKS----LQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 90 L~~c~~l~~----l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~--~~~~~~l~~L~~L~L~~~~i 161 (430)
+++|. ++. -.+.++++|++|++++|. +. ..+. ...+..+++|+.|++++|.+
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~--l~-----------------~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCE--VT-----------------NLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSG--GG-----------------TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCc--Cc-----------------chHHHHHHHHHhCccCcEecCCCCCh
Confidence 87764 222 234456677777776654 00 1110 12456677788887777765
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=1.9e-09 Score=91.14 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=67.9
Q ss_pred CCccEEEEcCccCC---CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEE
Q 014120 36 KSIYVLDFEFCKLE---PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEI 110 (430)
Q Consensus 36 ~~L~~L~Ls~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L 110 (430)
++|+.|++++|.+. .|..+..+++|++|++++|.+++. ..+..+++|++|++++|..-..+ .+.++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45566666665544 134445566666666666655432 33455666666666655321111 11124555555
Q ss_pred EcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH--HHHHhcCCCccceeccc
Q 014120 111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW--LYNQISELPFLEYLALH 182 (430)
Q Consensus 111 ~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~--l~~l~~~~p~Le~L~L~ 182 (430)
++++|. +. ..+....+..+++|+.|++++|.+++.. ....+..+|+|+.|+++
T Consensus 94 ~ls~N~--i~-----------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNK--IK-----------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSC--CC-----------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCc--CC-----------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555543 00 0001134567788888888888875421 12467778888888875
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.93 E-value=2.6e-09 Score=98.63 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=98.2
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..++.|+ +.++....+++ .+..+++|++|+|+++.+.. +..+.++++|++|+|++|.++... ...+.++++|++
T Consensus 35 ~~l~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLD--LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEE--CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCCEEE--ccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCE
Confidence 3455555 44455666665 46679999999999987654 456889999999999999985421 345678999999
Q ss_pred EEeeeCCCCCcc---ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH
Q 014120 88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK 164 (430)
Q Consensus 88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~ 164 (430)
|++++|. ++.+ .+.++++|+.|++++|. +..+ + ...+.++++|+.|+|++|.++.
T Consensus 112 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~-----------------~-~~~~~~l~~L~~L~L~~N~l~~- 169 (251)
T 3m19_A 112 LYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ--LQSI-----------------P-AGAFDKLTNLQTLSLSTNQLQS- 169 (251)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCCC-----------------C-TTTTTTCTTCCEEECCSSCCSC-
T ss_pred EEcCCCc-CCCcChhHhccCCcccEEECcCCc--CCcc-----------------C-HHHcCcCcCCCEEECCCCcCCc-
Confidence 9999974 3333 24567889999998764 2111 1 1234555666666666666632
Q ss_pred HHHHHhcCCCccceeccccc
Q 014120 165 WLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 165 ~l~~l~~~~p~Le~L~L~~c 184 (430)
..+..+..++.|+.|+++++
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSC
T ss_pred cCHHHHhCCCCCCEEEeeCC
Confidence 11123455666666666543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=98.51 Aligned_cols=144 Identities=19% Similarity=0.146 Sum_probs=93.3
Q ss_pred EEEecCCccccCCccccCCCCccEEEEcCccCCC--C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
.++.+++....+|..+. ..+++|+|+++.+.. + ..+.++++|++|+|++|.++... ...+.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence 45566666778887653 457899999987654 2 44788999999999999885421 235678899999999987
Q ss_pred CC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhc
Q 014120 94 PG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS 171 (430)
Q Consensus 94 ~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~ 171 (430)
.. +..-.+.++++|++|++++|. +.. . .+..+.++++|+.|+|++|.++. ..+..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~-----------------~-~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~ 150 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR--ITC-----------------V-GNDSFIGLSSVRLLSLYDNQITT-VAPGAFD 150 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC--CCC-----------------B-CTTSSTTCTTCSEEECTTSCCCC-BCTTTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc--CCe-----------------E-CHhHcCCCccCCEEECCCCcCCE-ECHHHhc
Confidence 53 222235567888888888764 111 0 02345566677777777776632 1133445
Q ss_pred CCCccceeccccc
Q 014120 172 ELPFLEYLALHYC 184 (430)
Q Consensus 172 ~~p~Le~L~L~~c 184 (430)
.+++|+.|+++++
T Consensus 151 ~l~~L~~L~L~~N 163 (220)
T 2v70_A 151 TLHSLSTLNLLAN 163 (220)
T ss_dssp TCTTCCEEECCSC
T ss_pred CCCCCCEEEecCc
Confidence 5666666666543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=5.7e-10 Score=104.10 Aligned_cols=162 Identities=13% Similarity=0.028 Sum_probs=110.6
Q ss_pred CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCC
Q 014120 35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS 114 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~ 114 (430)
+.+++.++++++.+.....+..+++|++|++++|.++.- + .+..+++|++|++++|..-....+.++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 566777788887765533567899999999999988543 2 4678999999999998532222367789999999998
Q ss_pred Cc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-
Q 014120 115 NR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI- 192 (430)
Q Consensus 115 c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~- 192 (430)
|. ..+..+.. ++|++|++++..+.....+..+++|+.|++++|.+++- + .+..+++|+.|+++++.- ..+..
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i-~~~~~l 168 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEI-TNTGGL 168 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCC-CBCTTS
T ss_pred CccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcC-cchHHh
Confidence 86 22222222 77888888774333223567788888888888887542 2 356778888888876542 22211
Q ss_pred -cccccceEecccc
Q 014120 193 -SSPRLKELVFERC 205 (430)
Q Consensus 193 -~~~~L~~L~l~~c 205 (430)
..++|+.|+++++
T Consensus 169 ~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQ 182 (263)
T ss_dssp TTCCCCCEEEEEEE
T ss_pred ccCCCCCEEeCCCC
Confidence 2456777777665
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.89 E-value=5.9e-09 Score=101.23 Aligned_cols=194 Identities=11% Similarity=0.050 Sum_probs=129.4
Q ss_pred CCceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC---CCCCCCCCCCCEE-EEeeecCChHHHHHHhcCCCCc
Q 014120 11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKL-CLSFVHVDDEVIRDMVAGCPLI 85 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L-~Ls~~~~~~~~l~~l~~~~p~L 85 (430)
.++++|+|.. +....+|+. +.++++|++|+|+++.+.. +..|.++++|+++ .+++|.++.-. +..+.++++|
T Consensus 30 ~~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred CCCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence 4677776654 668899976 5569999999999987533 3567899998875 55666664321 3457789999
Q ss_pred cEEEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEee-----ccceeEEEeecCCCC-ceeccCCCCcCceEEcc
Q 014120 86 EYININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYIN-----GVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLD 157 (430)
Q Consensus 86 e~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~-----~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~ 157 (430)
++|++++|.. +......+..++..+++..+. .+..+... ...++.|++++..+. .........+|+.|.+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 9999999753 222222234566777776665 55554321 246788888874333 12233345678999997
Q ss_pred C-CCCChHHHH-HHhcCCCccceecccccccccccccc-ccccceEecccccccccc
Q 014120 158 G-LSITDKWLY-NQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEF 211 (430)
Q Consensus 158 ~-~~i~~~~l~-~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~ 211 (430)
+ |.+ ..++ ..+.++++|+.|+++++ .+..++.. ..+|+.|.+.++.+++.+
T Consensus 186 ~~n~l--~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 186 DNNNL--EELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp TCTTC--CCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred cCCcc--cCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence 5 555 3343 35678899999999866 46666653 567888888877666654
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=4.1e-09 Score=108.86 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=106.5
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
.+++.|+| +++....+|..++ ++|++|+|++|.+..-. ..+++|++|+|++|.++. ++. +.+ +|+.|++
T Consensus 59 ~~L~~L~L--s~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQL--NRLNLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEEC--CSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEEC
T ss_pred CCccEEEe--CCCCCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEEC
Confidence 35666555 3445666887664 78999999988766422 557889999999988754 333 332 8889998
Q ss_pred eeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (430)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l 169 (430)
++|. ++.+.- .+++|+.|++++|. +..+....++|+.|+++++.+. .+. +. ++|+.|+|++|.++ .++.
T Consensus 128 s~N~-l~~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~--~lp~- 197 (571)
T 3cvr_A 128 DNNQ-LTMLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE--SLPA- 197 (571)
T ss_dssp CSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS--SCCC-
T ss_pred CCCc-CCCCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC--chhh-
Confidence 8874 333333 56888888888775 2222224567888887773222 112 33 67888888888774 2332
Q ss_pred hcC-----CCccceecccccccccccccc---ccccceEecccc
Q 014120 170 ISE-----LPFLEYLALHYCMKLRSINIS---SPRLKELVFERC 205 (430)
Q Consensus 170 ~~~-----~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c 205 (430)
+.. .+.|+.|+++++. +..++.. .++|+.|+++++
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CC--------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSS
T ss_pred HHHhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCC
Confidence 221 1222777776543 3344432 456777777776
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=1.2e-09 Score=106.55 Aligned_cols=189 Identities=16% Similarity=0.068 Sum_probs=126.2
Q ss_pred CceEEEEEecCCccccCC-----ccccCCC-CccEEEEcCccCCC--CCCCCC-----CCCCCEEEEeeecCCh---HHH
Q 014120 12 NVKELKLDVGCCRIYNLP-----QIVFYLK-SIYVLDFEFCKLEP--PRSTVT-----LFSLRKLCLSFVHVDD---EVI 75 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP-----~~l~~~~-~L~~L~Ls~~~~~~--~~~~~~-----l~~L~~L~Ls~~~~~~---~~l 75 (430)
++++|+ ++.+.....+ ..+..++ +|++|+|++|.+.. +..+.. +++|++|+|++|.+++ ..+
T Consensus 23 ~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 365555 4545566666 4455677 89999999987654 222333 3999999999999854 445
Q ss_pred HHHhcCC-CCccEEEeeeCCCCCccc-------cCC-CCCcCEEEcCCCcCCceEeE--------eec-cceeEEEeecC
Q 014120 76 RDMVAGC-PLIEYININNCPGLKSLQ-------LLG-LNKLKEIKLDSNRCGLERVY--------ING-VNVHSVDIKVY 137 (430)
Q Consensus 76 ~~l~~~~-p~Le~L~L~~c~~l~~l~-------l~~-~~~L~~L~l~~c~~~l~~l~--------i~~-p~L~~L~l~~~ 137 (430)
...+..+ ++|++|++++|.. +... +.. +.+|++|++++|. +.... ... ++|++|++++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 5556666 8999999999862 2221 223 3699999999875 22111 113 48999999984
Q ss_pred CCC--cee----ccCCC-CcCceEEccCCCCCh---HHHHHHhcC-CCccceecccccccccccc--------ccccccc
Q 014120 138 LEP--CEV----NVSSC-KNLTHLRLDGLSITD---KWLYNQISE-LPFLEYLALHYCMKLRSIN--------ISSPRLK 198 (430)
Q Consensus 138 ~~~--~~~----~~~~l-~~L~~L~L~~~~i~~---~~l~~l~~~-~p~Le~L~L~~c~~l~~l~--------~~~~~L~ 198 (430)
.+. ... .+..+ ++|+.|+|++|.+++ ..++..+.. .+.|+.|+++++. +.... ...++|+
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCS
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCcc
Confidence 332 111 23445 599999999999976 234554444 5699999998764 32221 2357899
Q ss_pred eEeccccc
Q 014120 199 ELVFERCE 206 (430)
Q Consensus 199 ~L~l~~c~ 206 (430)
.|++++|.
T Consensus 257 ~L~L~~n~ 264 (362)
T 3goz_A 257 TVYLDYDI 264 (362)
T ss_dssp EEEEEHHH
T ss_pred EEEeccCC
Confidence 99999983
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=7.2e-09 Score=107.07 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=116.1
Q ss_pred CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCC
Q 014120 36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS 114 (430)
Q Consensus 36 ~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~ 114 (430)
.+|+.|+++++.+.. |..+ +++|++|+|++|.++. ++ ..+++|+.|++++|. ++.+.- -..+|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPE-LPASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcch-hhcCCCEEECCC
Confidence 389999999987654 4333 4899999999999863 33 568999999999984 333322 124999999998
Q ss_pred Cc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc
Q 014120 115 NR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS 193 (430)
Q Consensus 115 c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~ 193 (430)
|. ++++. ..++|+.|++++..+.. +. ..+++|+.|+|++|.+++ ++. +. ++|+.|+++++. +..++..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp-~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~ 198 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LP-ELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAV 198 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCC
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CC-CcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhH
Confidence 76 33333 57899999998843331 11 156789999999999854 444 33 889999998663 4455543
Q ss_pred cccc-------ceEeccccccccccc---ccCCCcceEEecce
Q 014120 194 SPRL-------KELVFERCEELVEFE---LDTPNLSIFKCFNY 226 (430)
Q Consensus 194 ~~~L-------~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~ 226 (430)
..+| +.|+++++ .++.+. ...++|..+...++
T Consensus 199 ~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 199 PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 3467 88888887 666543 34566666655544
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=4.5e-09 Score=91.57 Aligned_cols=132 Identities=17% Similarity=0.059 Sum_probs=84.6
Q ss_pred cccCCCCccEEEEcCccCCCCCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc---cCCCCC
Q 014120 31 IVFYLKSIYVLDFEFCKLEPPRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNK 106 (430)
Q Consensus 31 ~l~~~~~L~~L~Ls~~~~~~~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---l~~~~~ 106 (430)
.+.++.+|+.|+++++.+.....+..+. +|+.|+|++|.+++- ..+..+++|+.|++++|. ++.+. +.++++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCC
Confidence 4566788899999988765433344444 889999998887542 345677788888887764 33322 234566
Q ss_pred cCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCccceeccccc
Q 014120 107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALHYC 184 (430)
Q Consensus 107 L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L~L~~c 184 (430)
|+.|++++|. +. ..+....+..+++|+.|++++|.++. ......+..+|.|+.|+++++
T Consensus 90 L~~L~L~~N~--i~-----------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNS--LV-----------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCC--CC-----------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCc--CC-----------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777766654 10 11111246678888999999888853 111224677888888888765
Q ss_pred c
Q 014120 185 M 185 (430)
Q Consensus 185 ~ 185 (430)
.
T Consensus 151 ~ 151 (176)
T 1a9n_A 151 K 151 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.80 E-value=1.7e-08 Score=105.03 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=79.3
Q ss_pred CceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
.+++|+ ++++....+|+ .+.++++|++|+|++|.+.. +..|.++++|++|+|++|.++.-. +..+.++++|++|
T Consensus 53 ~~~~Ld--Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLD--LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEE--CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEE
T ss_pred CCCEEE--eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEE
Confidence 455555 55567888886 46679999999999997654 467899999999999999885421 3457899999999
Q ss_pred EeeeCCC--CCccccCCCCCcCEEEcCCCc
Q 014120 89 NINNCPG--LKSLQLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~ 116 (430)
++++|.. +....+.++++|++|++++|.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 9999852 333346778999999999875
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.77 E-value=7.8e-09 Score=100.86 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=87.6
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCC-CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~-~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
++...+....+|..+. +.++.|+|+++.+.. +..+. ++++|++|+|++|.++... ...+.++++|++|+|++|.
T Consensus 23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc
Confidence 4555566777887654 468999999987654 34555 8999999999999885421 2346789999999999975
Q ss_pred CCCcc---ccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC-c-eecc---CCCCcCceEEccCCCCC
Q 014120 95 GLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP-C-EVNV---SSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 95 ~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~-~-~~~~---~~l~~L~~L~L~~~~i~ 162 (430)
++.+ .+.++++|+.|++++|. +..+. -..++|+.|++++..+. . ...+ ..+++|+.|+|++|.++
T Consensus 100 -l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 100 -LHTLDEFLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred -CCcCCHHHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 3333 35567899999998864 33221 12345555555552111 0 1112 34555555555555553
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.76 E-value=3.5e-09 Score=89.49 Aligned_cols=127 Identities=28% Similarity=0.324 Sum_probs=84.2
Q ss_pred CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEee
Q 014120 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIK 135 (430)
Q Consensus 56 ~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~ 135 (430)
..++|+.|++++|.+++..++..+..+++|+.|++++|..-..-.+.++++|+.|++++|. +..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~--i~~-------------- 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR--VSG-------------- 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC--CCS--------------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc--ccc--------------
Confidence 4578999999999887444556667888999999988743211234456777777777664 100
Q ss_pred cCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-------cccccceEecc
Q 014120 136 VYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFE 203 (430)
Q Consensus 136 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-------~~~~L~~L~l~ 203 (430)
.. +..+.++++|++|++++|.+++...+..+.++++|+.|++++++ +..++. ..++|+.|+++
T Consensus 79 --~~--~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 --GL--EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --CT--HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --hH--HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 01 23345678899999999998654344667889999999998764 333322 14566666654
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.74 E-value=2.4e-08 Score=90.36 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=93.8
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..+++|++ .++....+|+ .+..+++|++|+|+++.+.. |..+.++++|++|+|++|.++.- ....+.++++|+.
T Consensus 32 ~~l~~L~l--~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEEC--CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred cCCCEEEC--CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence 35565554 4456777776 45568999999999987654 57889999999999999998532 1234678999999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
|+|++|.. +..-.+.++++|+.|++++|. +. ..+ ...+..+++|+.|++++|.+.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~-----------------~~~-~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK--LQ-----------------TIA-KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CS-----------------CCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCc--CC-----------------EEC-HHHHhCCCCCCEEEeCCCCcC
Confidence 99999753 222245567888888888765 11 111 234677899999999999873
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.74 E-value=1.2e-08 Score=99.44 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=85.1
Q ss_pred cEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhc-CCCCccEEEeeeCCCCCcc---ccCCCCCcCEEEcC
Q 014120 39 YVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVA-GCPLIEYININNCPGLKSL---QLLGLNKLKEIKLD 113 (430)
Q Consensus 39 ~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~-~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~l~ 113 (430)
+.++++++.+.. |..+ .+.++.|+|++|.++... ...+. ++++|+.|+|++|. ++.+ .+.++++|+.|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 678888876654 4332 356999999999986432 22344 89999999999974 3333 36678999999999
Q ss_pred CCcCCceEeEe----eccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHH-Hh---cCCCccceecccc
Q 014120 114 SNRCGLERVYI----NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYN-QI---SELPFLEYLALHY 183 (430)
Q Consensus 114 ~c~~~l~~l~i----~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~-l~---~~~p~Le~L~L~~ 183 (430)
+|. +..+.. ..++|+.|++++..+. .+..+.++++|+.|+|++|.++. ++. .+ ..+++|+.|++++
T Consensus 97 ~N~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 97 SNH--LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp SSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCS
T ss_pred CCc--CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCC
Confidence 874 433321 2466666666663222 12345566666666666666633 221 12 3456666666654
Q ss_pred c
Q 014120 184 C 184 (430)
Q Consensus 184 c 184 (430)
+
T Consensus 173 N 173 (361)
T 2xot_A 173 N 173 (361)
T ss_dssp S
T ss_pred C
Confidence 3
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=3.6e-10 Score=100.61 Aligned_cols=136 Identities=20% Similarity=0.189 Sum_probs=85.8
Q ss_pred CccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-cc
Q 014120 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QL 101 (430)
Q Consensus 23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l 101 (430)
+....+|..+..+++|++|+++++.+.....+.++++|++|+|++|.++. ++..+..+++|+.|++++|. ++.+ .+
T Consensus 35 ~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l~~~ 111 (198)
T 1ds9_A 35 PPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGI 111 (198)
T ss_dssp TTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE-CCCHHHH
T ss_pred CcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc-CCcCCcc
Confidence 34556666777788999999988766542367788899999999988752 34455566788888888873 2222 22
Q ss_pred CCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH---------HHHHHhcC
Q 014120 102 LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK---------WLYNQISE 172 (430)
Q Consensus 102 ~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~---------~l~~l~~~ 172 (430)
.++++|+.|++++|. +. ..+....+..+++|+.|++++|.+++. .....+..
T Consensus 112 ~~l~~L~~L~l~~N~--i~-----------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK--IT-----------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HHHHHSSEEEESEEE--CC-----------------CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ccCCCCCEEECCCCc--CC-----------------chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 334555555555443 00 011012456778888888888877432 11224566
Q ss_pred CCccceec
Q 014120 173 LPFLEYLA 180 (430)
Q Consensus 173 ~p~Le~L~ 180 (430)
+|+|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 77777776
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.69 E-value=4.1e-08 Score=88.82 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=93.4
Q ss_pred CceEEEEEecCCccccCC-cc-ccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 12 NVKELKLDVGCCRIYNLP-QI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP-~~-l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.+++|+ ++.+....+| .. +..+++|++|+|+++.+.. +..+.++++|++|+|++|.++... ...+.++++|++
T Consensus 33 ~~~~L~--L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 109 (220)
T 2v70_A 33 YTAELR--LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKT 109 (220)
T ss_dssp TCSEEE--CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCE
T ss_pred CCCEEE--cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCE
Confidence 455444 5555666664 33 5679999999999987654 457899999999999999985431 345778999999
Q ss_pred EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
|+|++|.. +..-.+.++++|+.|++++|. +. .. .+..+..+++|+.|++++|.+.
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~-----------------~~-~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ--IT-----------------TV-APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSC--CC-----------------CB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCc--CC-----------------EE-CHHHhcCCCCCCEEEecCcCCc
Confidence 99999753 222345567888999888765 11 11 1256778899999999999874
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.67 E-value=1.4e-08 Score=90.80 Aligned_cols=140 Identities=20% Similarity=0.104 Sum_probs=100.6
Q ss_pred CceEEEEEecCCccccCCccc-cCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 12 NVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~~l-~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
.+++|++ .++....+|... ..+++|++|+++++.+.. +..+.++++|++|+|++|.++.. ....+.++++|++|
T Consensus 29 ~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEc--CCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 4565554 445566777664 469999999999987654 34578999999999999988532 12346789999999
Q ss_pred EeeeCCCCCcc---ccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120 89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i 161 (430)
++++|.. +.+ .+.++++|++|++++|. +..+. -..++|++|++++.. ....+++|+.|++..+.+
T Consensus 106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 106 ALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP-----WDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC-----BCCCTTTTHHHHHHHHHC
T ss_pred EcCCCcC-cccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC-----eecCCCCHHHHHHHHHhC
Confidence 9999753 322 24567999999999875 32222 236899999998832 224567888888877766
Q ss_pred C
Q 014120 162 T 162 (430)
Q Consensus 162 ~ 162 (430)
+
T Consensus 178 ~ 178 (208)
T 2o6s_A 178 S 178 (208)
T ss_dssp T
T ss_pred C
Confidence 4
No 122
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.67 E-value=2.9e-08 Score=86.04 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=77.5
Q ss_pred ccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcC---CCCccEEEeeeCCCCC
Q 014120 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAG---CPLIEYININNCPGLK 97 (430)
Q Consensus 24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~---~p~Le~L~L~~c~~l~ 97 (430)
....||......-.|+.|++++|.+.. -..+.++++|++|+|++|. +++.++..+... |++|++|+|++|..++
T Consensus 49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 467788665556689999999998544 2345789999999999995 799999888763 6899999999999877
Q ss_pred cc---ccCCCCCcCEEEcCCCcCCceE
Q 014120 98 SL---QLLGLNKLKEIKLDSNRCGLER 121 (430)
Q Consensus 98 ~l---~l~~~~~L~~L~l~~c~~~l~~ 121 (430)
+- .+..+++|++|++++|. .+.+
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~-~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLP-GVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCT-TCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCC-CCCc
Confidence 64 24568999999999997 4443
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.65 E-value=6.2e-08 Score=85.63 Aligned_cols=121 Identities=19% Similarity=0.175 Sum_probs=85.3
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC-C--CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P--RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~--~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 94 (430)
++.+++....+|..++. ++++|+++++.+.. + ..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.
T Consensus 13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence 45666677888877654 89999999987654 2 2378899999999999988542 13456788899999998875
Q ss_pred CCCcc---ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 95 GLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 95 ~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
. +.+ .+.++++|++|+++++. +.. .. +..+..+++|+.|++++|.+.
T Consensus 90 l-~~~~~~~~~~l~~L~~L~L~~N~--l~~----------------~~--~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 I-KEISNKMFLGLHQLKTLNLYDNQ--ISC----------------VM--PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CEECSSSSTTCTTCCEEECCSSC--CCE----------------EC--TTSSTTCTTCCEEECTTCCBC
T ss_pred C-CccCHHHhcCCCCCCEEECCCCc--CCe----------------eC--HHHhhcCCCCCEEEeCCCCcc
Confidence 3 222 24556777777777654 110 01 245677888999999988875
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.63 E-value=6.7e-08 Score=85.55 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=76.3
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG- 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~- 95 (430)
++.+++....+|..+. ++|++|+++++.+.. |..+.++++|++|+|++|.++... ...+.++++|++|+|++|..
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccC
Confidence 4555566777776653 578888888876554 456778888888888888774321 23466778888888877642
Q ss_pred -CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120 96 -LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (430)
Q Consensus 96 -l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i 161 (430)
+..-.+.++++|+.|+++++. +. ..+ ...+..+++|+.|++++|.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~--l~-----------------~~~-~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGND--IS-----------------VVP-EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSC--CC-----------------BCC-TTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCC--CC-----------------eeC-hhhhhcCccccEEEeCCCCe
Confidence 222224455666666666653 10 011 12356677788888877765
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=1.2e-07 Score=86.33 Aligned_cols=128 Identities=21% Similarity=0.139 Sum_probs=92.0
Q ss_pred CCceEEEEEecCCccccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
.+++.|+| +++....+ |..+..+++|++|+|+++.+.. +..+.++++|++|+|++|.++.- ....+..+++|+.
T Consensus 40 ~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEEc--CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence 45565555 44556666 4556679999999999987654 35578999999999999988532 1334678999999
Q ss_pred EEeeeCCCCCcc--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 88 ININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 88 L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
|++++|. ++.+ .+.++++|++|++++|. +. ..+ ...+..+++|+.|++.+|.+.
T Consensus 117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~--l~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQ--LK-----------------SIP-HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSC-CCSCCTTGGGCTTCSEEECCSSC--CC-----------------CCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred EeccCCc-ccccCcccccCCCCCEEECCCCc--CC-----------------ccC-HHHHhCCCCCCEEEeeCCCcc
Confidence 9999975 3333 23456788888888764 11 111 234678899999999999875
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.57 E-value=2.4e-07 Score=80.39 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=82.0
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++...+....+|..+. ++|++|+++++.+.. +..+.++++|++|+|++|.++.. ....+.++++|+.|++++|..
T Consensus 12 l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc
Confidence 3444556777886654 689999999987654 34568899999999999987532 123456788899999988742
Q ss_pred --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD 163 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 163 (430)
+..-.+.++++|+.|+++++. +. ..+ ...+..+++|+.|++++|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~--l~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQ--LK-----------------SVP-DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC--CS-----------------CCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHHHhhCCcccCEEECcCCc--ce-----------------EeC-HHHhcCCcccCEEEecCCCeec
Confidence 111123456777777777654 11 111 2235667888889998888753
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.55 E-value=5.3e-08 Score=100.74 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=58.9
Q ss_pred CccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCc
Q 014120 37 SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 37 ~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~ 116 (430)
.|+.|+|+++.+...+.+.++++|+.|+|++|.++ .++..++++++|+.|+|++|..-.-..+.++++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 35566666655443222555666666666666554 2233455556666666655431110123344555555555443
Q ss_pred CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCccceec
Q 014120 117 CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLA 180 (430)
Q Consensus 117 ~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L~ 180 (430)
+. + .. .+..+.++++|+.|+|++|.+++ .....++..+|+|+.|+
T Consensus 520 --l~---------------~-~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 --LQ---------------Q-SA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp --CC---------------S-SS-TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred --CC---------------C-CC-CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 00 0 00 02445566666777776666643 11223334455555553
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.49 E-value=1.1e-07 Score=82.54 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=88.1
Q ss_pred EEecCCccccCCccccCCC-CccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLK-SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~-~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l 96 (430)
|+++++....+|. +..+. +|++|+++++.+.....+.++++|++|+|++|.++.-. +.++..+++|++|++++|..
T Consensus 24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i- 100 (176)
T 1a9n_A 24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSL- 100 (176)
T ss_dssp EECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCC-
T ss_pred EEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcC-
Confidence 4555556667764 55554 99999999987765457889999999999999986421 23457899999999999853
Q ss_pred Ccc----ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCc--eeccCCCCcCceEEccCCCCCh
Q 014120 97 KSL----QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD 163 (430)
Q Consensus 97 ~~l----~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~--~~~~~~l~~L~~L~L~~~~i~~ 163 (430)
+.+ .+.++++|+.|++++|. +. ..+. ...+..+++|+.|++++|...+
T Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~N~--i~-----------------~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 101 VELGDLDPLASLKSLTYLCILRNP--VT-----------------NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCGGGGGGGGGCTTCCEEECCSSG--GG-----------------GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CcchhhHhhhcCCCCCEEEecCCC--CC-----------------CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 322 34567888888888765 10 1110 0136678899999999988743
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.48 E-value=3.4e-08 Score=105.23 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=61.9
Q ss_pred CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEEEcCCCcCCceEeE---eec
Q 014120 52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVY---ING 126 (430)
Q Consensus 52 ~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~l~---i~~ 126 (430)
..+..+++|+.|+|++|.+.. ++.-+.++++|++|+|++|.. +.+ .+.++++|+.|++++|. +..+. ..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~--l~~lp~~~~~l 292 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNR--LTSLPAELGSC 292 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSC--CSSCCSSGGGG
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCc--CCccChhhcCC
Confidence 455666777777777766531 222234666777777766532 222 23455667777776654 22221 134
Q ss_pred cceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCCh
Q 014120 127 VNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD 163 (430)
Q Consensus 127 p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~ 163 (430)
++|++|++++..+. .+..+.++++|+.|+|++|.+++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 66777777662222 23458889999999999999864
No 130
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=1.2e-08 Score=99.93 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=92.2
Q ss_pred CCCccEEEEcCccCCCC--C----CC-CCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc-------
Q 014120 35 LKSIYVLDFEFCKLEPP--R----ST-VTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ------- 100 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~~~~--~----~~-~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~------- 100 (430)
.++|+.|+|++|.+... . .+ .+.++|++|+|++|.+++.++..+...+++|+.|+|++|. +....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 35678888888765531 1 11 2346788888888888777766666667778888888774 22111
Q ss_pred c-CCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH---HHHHhcCCCcc
Q 014120 101 L-LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFL 176 (430)
Q Consensus 101 l-~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~L 176 (430)
+ ..+++|++|++++|. +..... ......+..+++|++|+|++|.+++.. +...+..++.|
T Consensus 150 L~~~~~~L~~L~Ls~n~--l~~~~~--------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP--LTAAGV--------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp HHSTTCCCCEEECCSSC--CHHHHH--------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred HHhcCCccceeeCCCCC--CChHHH--------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 1 234667777777764 111000 000112345667888888888876633 33445667778
Q ss_pred ceeccccccccc----cccc---cccccceEecccccccc
Q 014120 177 EYLALHYCMKLR----SINI---SSPRLKELVFERCEELV 209 (430)
Q Consensus 177 e~L~L~~c~~l~----~l~~---~~~~L~~L~l~~c~~L~ 209 (430)
+.|++++|.--. .+.. ..++|+.|++++| .++
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~ 252 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELS 252 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence 888887664211 1111 2467888888877 454
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.41 E-value=1.7e-07 Score=82.75 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=85.0
Q ss_pred cEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCccccCCCCCcCEEEcCCC
Q 014120 39 YVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSLQLLGLNKLKEIKLDSN 115 (430)
Q Consensus 39 ~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c 115 (430)
++++++++.+.. |..+ .++|++|+|++|.++.......+..+++|++|+|++|.. +..-.+.++++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 788999877654 4333 349999999999885432112467899999999998753 22224556788888888876
Q ss_pred cCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120 116 RCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (430)
Q Consensus 116 ~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~ 185 (430)
. +.. .+ ...+.++++|++|+|++|.+++ ..+..+..+++|+.|++++++
T Consensus 89 ~--l~~-----------------~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 K--IKE-----------------IS-NKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp C--CCE-----------------EC-SSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCC
T ss_pred c--CCc-----------------cC-HHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCC
Confidence 4 111 11 2346778999999999999854 224456678888888887544
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.36 E-value=7.3e-07 Score=78.78 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=77.4
Q ss_pred CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L 88 (430)
.++++|+ +.++....+|..+..+++|++|+|+++.+.. +..+.++++|++|+|++|.++... +..+.++++|+.|
T Consensus 31 ~~l~~L~--L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELY--LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEE--CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred CCCCEEE--CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence 3566555 4456678899888889999999999987655 456899999999999999985431 2357789999999
Q ss_pred EeeeCCC--CCccccCCCCCcCEEEcCCCc
Q 014120 89 NINNCPG--LKSLQLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~ 116 (430)
+|++|.. +..-.+.++++|+.|+++++.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9999753 222224456788888887654
No 133
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=2.5e-07 Score=80.17 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=35.6
Q ss_pred CCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120 57 LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ 100 (430)
Q Consensus 57 l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~ 100 (430)
-.+|+.|+|++|.+++.++..+ .+|++|++|+|++|..+++-.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~g 102 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGC 102 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHH
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHH
Confidence 3579999999999999887765 689999999999998776543
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=1.8e-06 Score=84.07 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=28.7
Q ss_pred CCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeecCChHHHHHHhc-CCCCccEEEee
Q 014120 34 YLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVA-GCPLIEYININ 91 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~-~~p~Le~L~L~ 91 (430)
.+++|+.|.|+++. ...+. + .+++|++|+|..|.++...+..+.. .+|+|+.|+|+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34556666665542 22111 2 2556666666666555555444432 45666666654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=4.4e-07 Score=87.11 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=35.9
Q ss_pred CCcCceEEccCCCCChHHHHH-HhcCCCccceeccccccccccccc----cccccc-eEeccccccccccc----ccCCC
Q 014120 148 CKNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSINI----SSPRLK-ELVFERCEELVEFE----LDTPN 217 (430)
Q Consensus 148 l~~L~~L~L~~~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~-~L~l~~c~~L~~~~----i~~p~ 217 (430)
|++|+.+++.+|.++ .++. .+.+|++|+.+++.+. ++.++. .+.+|+ .+.+.+ .++.+. -..++
T Consensus 225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 566677777666552 2322 4556666777666532 333332 134555 555544 333332 23355
Q ss_pred cceEEec
Q 014120 218 LSIFKCF 224 (430)
Q Consensus 218 L~~~~~~ 224 (430)
|+.+.+.
T Consensus 299 L~~l~l~ 305 (329)
T 3sb4_A 299 LRYVLAT 305 (329)
T ss_dssp EEEEEEC
T ss_pred CCEEEeC
Confidence 5555543
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=1.1e-06 Score=90.91 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=79.1
Q ss_pred CceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120 12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (430)
Q Consensus 12 ~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L 90 (430)
.++. |+++++....+|. +..+++|+.|+|++|.+.. |..+.++++|+.|+|++|.++. ++ .++++++|+.|+|
T Consensus 442 ~L~~--L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRV--LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSE--EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceE--EEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 4555 4556667788996 8889999999999987665 6778999999999999999975 44 6889999999999
Q ss_pred eeCCC--CC-ccccCCCCCcCEEEcCCCc
Q 014120 91 NNCPG--LK-SLQLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 91 ~~c~~--l~-~l~l~~~~~L~~L~l~~c~ 116 (430)
++|.. +. .-.+.++++|+.|++++|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99853 22 2345677899999998875
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.28 E-value=1.5e-06 Score=75.04 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=71.4
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++.+++....+|..+. ++|++|+|+++.+.. +..+.++++|++|+|++|.++.- ....+.++++|++|+|+++.
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~- 89 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ- 89 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc-
Confidence 5566677888997764 889999999987654 46688999999999999988532 13346789999999999874
Q ss_pred CCcc---ccCCCCCcCEEEcCCCc
Q 014120 96 LKSL---QLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 96 l~~l---~l~~~~~L~~L~l~~c~ 116 (430)
++.+ .+.++++|+.|+++++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 3322 24556788888887654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=1.8e-06 Score=74.97 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=70.7
Q ss_pred EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
++.+++....+|..+. ++|++|+|+++.+.. |..+.++++|++|+|++|.++.- ....+.++++|+.|+|++|..
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc
Confidence 4566667788898764 889999999987654 46788999999999999988542 123457889999999998742
Q ss_pred --CCccccCCCCCcCEEEcCCCc
Q 014120 96 --LKSLQLLGLNKLKEIKLDSNR 116 (430)
Q Consensus 96 --l~~l~l~~~~~L~~L~l~~c~ 116 (430)
+..-.+.++++|++|+++++.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC
T ss_pred ceeCHHHhccccCCCEEEeCCCC
Confidence 222124556788888887654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=1e-06 Score=84.45 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=87.3
Q ss_pred CCCccEEEEcCccC--CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeee-----------------CCC
Q 014120 35 LKSIYVLDFEFCKL--EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN-----------------CPG 95 (430)
Q Consensus 35 ~~~L~~L~Ls~~~~--~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~-----------------c~~ 95 (430)
|++|+.|+|.+ .+ .....|.+|++|+.|++.++.++.-. ...+.+|.++..+.+.. |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 79999999988 33 23467899999999999988652110 12334455555554322 222
Q ss_pred CC--------------------------ccccC-------------CCCCcCEEEcCCCcCCceEeEe----eccceeEE
Q 014120 96 LK--------------------------SLQLL-------------GLNKLKEIKLDSNRCGLERVYI----NGVNVHSV 132 (430)
Q Consensus 96 l~--------------------------~l~l~-------------~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L 132 (430)
++ .+.+. .|++|+.+++..+ .+..+.- ++++|+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n--~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT--NATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB--CCCEECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC--CcceecHhhhhCCCCCCEE
Confidence 21 00000 2678888888864 3444432 36788888
Q ss_pred EeecCCCC-ceeccCCCCcCc-eEEccCCCCChHHH-HHHhcCCCccceeccc
Q 014120 133 DIKVYLEP-CEVNVSSCKNLT-HLRLDGLSITDKWL-YNQISELPFLEYLALH 182 (430)
Q Consensus 133 ~l~~~~~~-~~~~~~~l~~L~-~L~L~~~~i~~~~l-~~l~~~~p~Le~L~L~ 182 (430)
.+...... ....|.+|++|+ .+.+.. .++ .+ +..+.+|++|+.+++.
T Consensus 256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 256 KLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTTCTTEEEEEEC
T ss_pred ECCcccceehHHHhhCChhccEEEEEcc-cce--EEchhhhhCCccCCEEEeC
Confidence 88763211 245688899999 999977 442 22 2357788889988874
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.19 E-value=2.9e-07 Score=98.10 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=76.3
Q ss_pred CCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCCh--------HHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCC
Q 014120 36 KSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDD--------EVIRDMVAGCPLIEYININNCPGLKSL--QLLGLN 105 (430)
Q Consensus 36 ~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~--------~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~ 105 (430)
..++.|+|.++..... ....|+.++|+.+.++. ......+..++.|+.|+|++|... .+ .+.+++
T Consensus 173 ~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA----NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CccceEEeeCCCCCcc----hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 4577888877654431 11223444444444321 122455778999999999998642 22 234679
Q ss_pred CcCEEEcCCCcCCceEeE---eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120 106 KLKEIKLDSNRCGLERVY---INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL 181 (430)
Q Consensus 106 ~L~~L~l~~c~~~l~~l~---i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L 181 (430)
+|+.|++++|. +..+. -.+++|+.|++++..+. .+..+.++++|++|+|++|.++ .++..+.++++|+.|+|
T Consensus 248 ~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 248 FLTRLYLNGNS--LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp SCSCCBCTTSC--CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEEC
T ss_pred CCCEEEeeCCc--CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeC
Confidence 99999999875 33332 24689999999883332 3456788999999999999984 55656888999999999
Q ss_pred ccccc
Q 014120 182 HYCMK 186 (430)
Q Consensus 182 ~~c~~ 186 (430)
+++..
T Consensus 324 ~~N~l 328 (727)
T 4b8c_D 324 EGNPL 328 (727)
T ss_dssp TTSCC
T ss_pred CCCcc
Confidence 87653
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=2.3e-07 Score=90.80 Aligned_cols=164 Identities=20% Similarity=0.239 Sum_probs=107.3
Q ss_pred HHHHHhCCceEEEEEecC---CccccCCccccC-CCCccEEEEcCccCCCC---CCCCCCCCCCEEEEeeecCChHHHHH
Q 014120 5 LSYAFASNVKELKLDVGC---CRIYNLPQIVFY-LKSIYVLDFEFCKLEPP---RSTVTLFSLRKLCLSFVHVDDEVIRD 77 (430)
Q Consensus 5 i~~a~~~~v~~L~L~~~~---~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~~---~~~~~l~~L~~L~Ls~~~~~~~~l~~ 77 (430)
+...+...++.++|..+. .....+...+.. +++|++|+|++|.+... .....+++|++|+|++|.+++.+...
T Consensus 66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 344456678877764432 112233333333 47999999999987541 22345779999999999998766554
Q ss_pred Hh----cCCCCccEEEeeeCCCCCc-----c--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccC
Q 014120 78 MV----AGCPLIEYININNCPGLKS-----L--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVS 146 (430)
Q Consensus 78 l~----~~~p~Le~L~L~~c~~l~~-----l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~ 146 (430)
+. ..++.|++|+|++|. ++. + .+..+++|++|++++|. +.+... ......+.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~--------------~~L~~~L~ 208 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGL--------------ELLAAQLD 208 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHH--------------HHHHHHGG
T ss_pred HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHH--------------HHHHHHHh
Confidence 43 467899999999985 322 1 12346889999998875 111000 00012345
Q ss_pred CCCcCceEEccCCCCChHH---HHHHhcCCCccceecccccc
Q 014120 147 SCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCM 185 (430)
Q Consensus 147 ~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~ 185 (430)
.+++|+.|+|++|.+++.. +...+..++.|+.|++++|.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5678999999999998754 34455678999999998765
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=2e-06 Score=83.65 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=92.1
Q ss_pred CCCCCCCEEEEeeecCC--------hHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCcC---CceEeE
Q 014120 55 VTLFSLRKLCLSFVHVD--------DEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC---GLERVY 123 (430)
Q Consensus 55 ~~l~~L~~L~Ls~~~~~--------~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~---~l~~l~ 123 (430)
.++++|+.|.+...... ...+..++..+|+|+.|+|++|.++....+. .++|++|++..|.- .+..+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence 35677777777544221 1135567788899999999887544322233 68899999876640 111111
Q ss_pred -eeccceeEEEeec--CC---CC----c--eeccCCCCcCceEEccCCCCChHHHHHHh--cCCCccceecccccccccc
Q 014120 124 -INGVNVHSVDIKV--YL---EP----C--EVNVSSCKNLTHLRLDGLSITDKWLYNQI--SELPFLEYLALHYCMKLRS 189 (430)
Q Consensus 124 -i~~p~L~~L~l~~--~~---~~----~--~~~~~~l~~L~~L~L~~~~i~~~~l~~l~--~~~p~Le~L~L~~c~~l~~ 189 (430)
...|+|++|.++. .. .. . ......+++|+.|+|.+|.+.+.....+. ..+|.|+.|+++.+. +..
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d 293 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTD 293 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CCh
Confidence 1468899888752 11 00 0 01113578999999999998764444443 357899999996543 322
Q ss_pred -----ccc---cccccceEecccccccc
Q 014120 190 -----INI---SSPRLKELVFERCEELV 209 (430)
Q Consensus 190 -----l~~---~~~~L~~L~l~~c~~L~ 209 (430)
+.. ..++|+.|++++| .++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred HHHHHHHhhcccCCcceEEECCCC-cCC
Confidence 221 2467888888777 344
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.12 E-value=5.4e-06 Score=71.73 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred CCceEEEEEecCCccccCCccc-cCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~~l-~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..+++|++ +++....+|+.. ..+++|++|+++++.+.. +..+.++++|++|+|++|.++.. ....+..+++|+.
T Consensus 28 ~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEe--CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence 45666654 445566777664 568999999999987655 34578999999999999998532 1334678999999
Q ss_pred EEeeeCCCCCccc---cCCCCCcCEEEcCCCc
Q 014120 88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNR 116 (430)
Q Consensus 88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~ 116 (430)
|++++|. ++.+. +.++++|++|+++++.
T Consensus 105 L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 105 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 9999974 33332 3456788888888764
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.97 E-value=1.6e-05 Score=78.54 Aligned_cols=194 Identities=12% Similarity=0.161 Sum_probs=108.8
Q ss_pred cccCCccccCCCCccEEEEcCc-cCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccC
Q 014120 25 IYNLPQIVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLL 102 (430)
Q Consensus 25 ~~~LP~~l~~~~~L~~L~Ls~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~ 102 (430)
...++...|.-.+|+.+.+... .......|.++++|+.++|.++.++.- +.-...|++|+.+.+... ..+..-.+.
T Consensus 146 i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I--~~~aF~~~~L~~l~lp~~l~~I~~~aF~ 223 (401)
T 4fdw_A 146 LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKL--PASTFVYAGIEEVLLPVTLKEIGSQAFL 223 (401)
T ss_dssp CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEE--CTTTTTTCCCSEEECCTTCCEECTTTTT
T ss_pred ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEe--chhhEeecccCEEEeCCchheehhhHhh
Confidence 4445544444345666666552 222235677778888888876655221 111112577777777532 123333456
Q ss_pred CCCCcCEEEcCCCcCCceEeE---eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCCh---HHH-HHHhcCCC
Q 014120 103 GLNKLKEIKLDSNRCGLERVY---INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD---KWL-YNQISELP 174 (430)
Q Consensus 103 ~~~~L~~L~l~~c~~~l~~l~---i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~---~~l-~~l~~~~p 174 (430)
+|++|+.+.+.. ++..+. +...+|+.+.+...... ....|.+|++|+.+.+.++.+.. ..+ ...+.+|+
T Consensus 224 ~~~~L~~l~l~~---~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 224 KTSQLKTIEIPE---NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp TCTTCCCEECCT---TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCCEEecCC---CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 778888888864 333332 22357777777552211 24567889999999998776531 112 33577889
Q ss_pred ccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120 175 FLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV 227 (430)
Q Consensus 175 ~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~ 227 (430)
+|+.+++.+ .+..+.. .+.+|+.+.+.. +++.+. +..-+|+.+.+.+..
T Consensus 301 ~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~ 356 (401)
T 4fdw_A 301 KLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTT 356 (401)
T ss_dssp TCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSS
T ss_pred cCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCC
Confidence 999998862 3444332 145677776643 244332 222256666665543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.94 E-value=4.2e-07 Score=80.50 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--cCCCCCcCEEEcCCCcCCceEeEeecccee
Q 014120 53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKEIKLDSNRCGLERVYINGVNVH 130 (430)
Q Consensus 53 ~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~ 130 (430)
.+.++++|++|+|++|.+++ ++ .+.++++|+.|++++|. ++.+. +..+++|+.|++++|.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-------------- 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-------------- 104 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE--------------
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc--------------
Confidence 56778889999999888754 23 45567888888888863 22111 0112344444444332
Q ss_pred EEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120 131 SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (430)
Q Consensus 131 ~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~ 185 (430)
+.....+..+++|+.|++++|.+++-.....+..+++|+.|++++++
T Consensus 105 --------l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 105 --------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp --------CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred --------CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 11112456678899999999988652222456788889999887664
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.84 E-value=3.4e-05 Score=66.70 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=69.0
Q ss_pred ccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc---cCCCCCcCEEEcC
Q 014120 38 IYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNKLKEIKLD 113 (430)
Q Consensus 38 L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---l~~~~~L~~L~l~ 113 (430)
-+.++++++.+.. |..+ .++|++|+|++|.++.. .+..+.++++|+.|+|++|. ++.+. +.++++|+.|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 4788998887654 4433 38999999999988542 13457788999999999874 33332 3456777777777
Q ss_pred CCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 114 SNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 114 ~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
++. +. .++ ...+.++++|+.|+|++|.+.
T Consensus 90 ~N~--l~-----------------~l~-~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNH--LK-----------------SIP-RGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSC--CC-----------------CCC-TTTTTTCTTCSEEECCSSCBC
T ss_pred CCc--cc-----------------eeC-HHHhccccCCCEEEeCCCCcc
Confidence 654 11 111 233677888999999888774
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.74 E-value=3e-05 Score=74.60 Aligned_cols=95 Identities=22% Similarity=0.158 Sum_probs=69.6
Q ss_pred EEecCC-ccccCCccccCCCCccEEEEcC-ccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120 18 LDVGCC-RIYNLPQIVFYLKSIYVLDFEF-CKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (430)
Q Consensus 18 L~~~~~-~~~~LP~~l~~~~~L~~L~Ls~-~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c 93 (430)
++..+. ....+|. +..+++|+.|+|++ +.+.. +..+.++++|+.|+|++|.++.. .+..+.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCC
Confidence 355554 6788998 88899999999997 76654 35688999999999999998553 1345788999999999997
Q ss_pred CCCCccc---cCCCCCcCEEEcCCCc
Q 014120 94 PGLKSLQ---LLGLNKLKEIKLDSNR 116 (430)
Q Consensus 94 ~~l~~l~---l~~~~~L~~L~l~~c~ 116 (430)
. ++.+. +.. ..|+.|++.++.
T Consensus 91 ~-l~~~~~~~~~~-~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 A-LESLSWKTVQG-LSLQELVLSGNP 114 (347)
T ss_dssp C-CSCCCSTTTCS-CCCCEEECCSSC
T ss_pred c-cceeCHHHccc-CCceEEEeeCCC
Confidence 4 33332 222 237777777654
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.74 E-value=2.6e-05 Score=67.16 Aligned_cols=82 Identities=18% Similarity=0.104 Sum_probs=62.3
Q ss_pred CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (430)
Q Consensus 11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~ 87 (430)
..++.|+ ++++....+|+ .+..+++|++|+|+++.+.. +..+.++++|++|+|++|.++.-. ...+..+++|+.
T Consensus 30 ~~l~~L~--L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEE--cCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence 4455544 55566777854 46679999999999987655 355789999999999999985321 235778999999
Q ss_pred EEeeeCCC
Q 014120 88 ININNCPG 95 (430)
Q Consensus 88 L~L~~c~~ 95 (430)
|+|+++..
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 99999753
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=5.8e-05 Score=65.95 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=24.0
Q ss_pred cCCCCcCceEEc--cCCCCChHH---HHHHhcCCCccceeccccc
Q 014120 145 VSSCKNLTHLRL--DGLSITDKW---LYNQISELPFLEYLALHYC 184 (430)
Q Consensus 145 ~~~l~~L~~L~L--~~~~i~~~~---l~~l~~~~p~Le~L~L~~c 184 (430)
+...++|++|+| ++|.+.+.. +...+...+.|+.|+++++
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 344556777777 667776643 3344455666777776544
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.29 E-value=0.0007 Score=66.63 Aligned_cols=81 Identities=7% Similarity=0.049 Sum_probs=50.7
Q ss_pred ccCCCCCcCEEEcCCCcC---CceEeE----eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH-HHHh
Q 014120 100 QLLGLNKLKEIKLDSNRC---GLERVY----INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL-YNQI 170 (430)
Q Consensus 100 ~l~~~~~L~~L~l~~c~~---~l~~l~----i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l-~~l~ 170 (430)
.+.+|++|+.+.+..+.. ....+. -+|++|+.+.+...... ....|.+|++|+.+.+..+ ++ .+ ...+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~--~I~~~aF 342 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VT--QINFSAF 342 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CC--EECTTSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-cc--EEcHHhC
Confidence 456788888888765431 111221 24678888887652111 2456889999999999654 31 12 2346
Q ss_pred cCCCccceeccccc
Q 014120 171 SELPFLEYLALHYC 184 (430)
Q Consensus 171 ~~~p~Le~L~L~~c 184 (430)
.+| +|+.+++.+.
T Consensus 343 ~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 343 NNT-GIKEVKVEGT 355 (401)
T ss_dssp SSS-CCCEEEECCS
T ss_pred CCC-CCCEEEEcCC
Confidence 678 8999998754
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.09 E-value=0.00082 Score=64.37 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=68.5
Q ss_pred cEEEEcCc-cCCC-CCCCCCCCCCCEEEEee-ecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcCEEEc
Q 014120 39 YVLDFEFC-KLEP-PRSTVTLFSLRKLCLSF-VHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKL 112 (430)
Q Consensus 39 ~~L~Ls~~-~~~~-~~~~~~l~~L~~L~Ls~-~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~l 112 (430)
..++.++. .+.. |. +..+++|++|+|++ |.++.- .+..+.++++|+.|+|++|. ++.+ .+.++++|+.|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence 34577776 5544 56 88899999999996 887542 12457789999999999974 4433 3456788888888
Q ss_pred CCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120 113 DSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (430)
Q Consensus 113 ~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 162 (430)
+++. +. .+| ...+..++ |+.|+|.+|.+.
T Consensus 88 ~~N~--l~-----------------~~~-~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNA--LE-----------------SLS-WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSC--CS-----------------CCC-STTTCSCC-CCEEECCSSCCC
T ss_pred CCCc--cc-----------------eeC-HHHcccCC-ceEEEeeCCCcc
Confidence 8764 11 111 12333444 999999998875
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00072 Score=58.86 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=39.8
Q ss_pred CCCCcCceEEccCCCCChHHHH---HHhcCCCccceecc--cccccccc-----cc---ccccccceEecccc
Q 014120 146 SSCKNLTHLRLDGLSITDKWLY---NQISELPFLEYLAL--HYCMKLRS-----IN---ISSPRLKELVFERC 205 (430)
Q Consensus 146 ~~l~~L~~L~L~~~~i~~~~l~---~l~~~~p~Le~L~L--~~c~~l~~-----l~---~~~~~L~~L~l~~c 205 (430)
...++|++|+|++|.+.+.... ..+...+.|+.|++ +++. +.. +. ...++|++|++++|
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456899999999999885544 44566788999999 4333 211 11 12467888888776
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.42 E-value=0.0013 Score=60.74 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=52.1
Q ss_pred HhcCCCCccEEEeeeCCC--CCccc--cCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCce
Q 014120 78 MVAGCPLIEYININNCPG--LKSLQ--LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTH 153 (430)
Q Consensus 78 l~~~~p~Le~L~L~~c~~--l~~l~--l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~ 153 (430)
+..++|+|+.|+|++|.- +..+. +..+++|+.|+++++. +.. ......+.++ +|+.
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~--i~~-----------------~~~l~~l~~l-~L~~ 224 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE--LKS-----------------ERELDKIKGL-KLEE 224 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC--CCS-----------------GGGGGGGTTS-CCSE
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc--cCC-----------------chhhhhcccC-Ccce
Confidence 335788999999988752 22211 1246777777777654 110 0001123334 8999
Q ss_pred EEccCCCCCh------HHHHHHhcCCCccceecc
Q 014120 154 LRLDGLSITD------KWLYNQISELPFLEYLAL 181 (430)
Q Consensus 154 L~L~~~~i~~------~~l~~l~~~~p~Le~L~L 181 (430)
|+|++|.+++ .-....+..+|+|+.|+=
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999999864 223456778899988874
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.20 E-value=0.0022 Score=59.27 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=50.8
Q ss_pred CCCCccEEEEcCccCCC----CCCCCCCCCCCEEEEeeecCChH-HHHHHhcCCCCccEEEeeeCCCCCcc---------
Q 014120 34 YLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDDE-VIRDMVAGCPLIEYININNCPGLKSL--------- 99 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~----~~~~~~l~~L~~L~Ls~~~~~~~-~l~~l~~~~p~Le~L~L~~c~~l~~l--------- 99 (430)
++++|+.|+|+++.+.. +..+..+++|+.|+|++|.+++. .+.. +..+ +|++|+|++|.--...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccCcchhHHHH
Confidence 36788999999887654 12345788999999999888542 2222 2233 8889998887642211
Q ss_pred ccCCCCCcCEEEcC
Q 014120 100 QLLGLNKLKEIKLD 113 (430)
Q Consensus 100 ~l~~~~~L~~L~l~ 113 (430)
.+..+|+|+.|+-.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 13446888877654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.72 E-value=0.014 Score=56.94 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC-CCCccccCCCCCcCEEEc
Q 014120 34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP-GLKSLQLLGLNKLKEIKL 112 (430)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~-~l~~l~l~~~~~L~~L~l 112 (430)
+|..|+.+.+..........+....+|+.+.+......-. ...+.+|+.|+.+.+.... .+..-.+.+|..++.+..
T Consensus 206 ~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~--~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 206 ECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELG--KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEEC--SSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred cccccceeecCCCceEeehhhcccCCCceEEECCCceecc--cccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 4667776666553221112334456777777754321000 1235577778877775432 122333445556665554
Q ss_pred CCCcCCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH-HHHhcCCCccceeccc
Q 014120 113 DSNRCGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL-YNQISELPFLEYLALH 182 (430)
Q Consensus 113 ~~c~~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l-~~l~~~~p~Le~L~L~ 182 (430)
.... ........+.+|+.+.+...... ....|.+|.+|+.+.+..+ ++ .+ ...+.+|.+|+.+++.
T Consensus 284 ~~~~-i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 284 GSVI-VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp CSSE-ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCC
T ss_pred Ccee-eccccccccccccccccccccceechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEEC
Confidence 3211 00000112455555555441111 2345677788888877543 21 12 2245677777777774
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.69 E-value=0.034 Score=54.12 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=74.6
Q ss_pred CccccCCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCc
Q 014120 29 PQIVFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKL 107 (430)
Q Consensus 29 P~~l~~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L 107 (430)
....+.+.+|+.+.+.... ......+.++++|+.+.+..+...-. ...+..|+.++.+..... .+....+.+|.+|
T Consensus 223 ~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~--~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L 299 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIG--GSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSL 299 (394)
T ss_dssp CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEEC--SCTTTTCTTCCEEEECSS-EECTTTTTTCTTC
T ss_pred ehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceee--ccccccccccceeccCce-eeccccccccccc
Confidence 3444556667777665422 12224556667777776665432100 112445566665554432 1222234445555
Q ss_pred CEEEcCCCcCCceEeE----eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH-HHHhcCCCccceecc
Q 014120 108 KEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL-YNQISELPFLEYLAL 181 (430)
Q Consensus 108 ~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l-~~l~~~~p~Le~L~L 181 (430)
+.+.+.. .+..+. .+|.+|+.+.+...... ....|.+|.+|+.+.+..+ ++ .+ ...+.+|++|+.+++
T Consensus 300 ~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 300 TEVKLLD---SVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LR--KIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CEEEECT---TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CC--EECTTTBTTCTTCCEEEE
T ss_pred ccccccc---ccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-cc--EehHHHhhCCCCCCEEEE
Confidence 5555542 222221 12455555555331111 2346788889998888654 31 12 235678888888887
Q ss_pred c
Q 014120 182 H 182 (430)
Q Consensus 182 ~ 182 (430)
.
T Consensus 374 p 374 (394)
T 4fs7_A 374 P 374 (394)
T ss_dssp E
T ss_pred C
Confidence 5
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.61 E-value=0.013 Score=57.05 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCcCEEEcCC
Q 014120 52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEIKLDS 114 (430)
Q Consensus 52 ~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L~~L~l~~ 114 (430)
..|.++.+|+.+.+.....+-. ...+.+|+.|+.+.+... ..+..-.+.+|.+|+.+.+..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceeeecccccEEecccccceec--CcccccccccccccCCCcccccCceeecCCCCcCEEEeCC
Confidence 4677778888887765432110 124567788888777531 223333456677777777653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.16 E-value=0.094 Score=50.89 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred ccCCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCc
Q 014120 32 VFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKL 107 (430)
Q Consensus 32 l~~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L 107 (430)
+.+|.+|+.+.+.... ......|.++++|+.+.+...- +.+ ..+.+|++|+.+++... ..+..-.+.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 4458999999997643 2234678899999999997532 222 35789999999999642 23334456677888
Q ss_pred CEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccc
Q 014120 108 KEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALH 182 (430)
Q Consensus 108 ~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~ 182 (430)
+.+.+... +.. + ....|.+|.+|+.+.+.++.. . + ..+..+..|+.+.+.
T Consensus 337 ~~i~ip~s---v~~-----------------I-~~~aF~~C~~L~~i~~~~~~~--~-~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 337 ERIAIPSS---VTK-----------------I-PESAFSNCTALNNIEYSGSRS--Q-W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp CEEEECTT---CCB-----------------C-CGGGGTTCTTCCEEEESSCHH--H-H-HTCBCCCCC------
T ss_pred CEEEECcc---cCE-----------------E-hHhHhhCCCCCCEEEECCcee--e-h-hhhhccCCCCEEEeC
Confidence 87777431 111 1 135678888999998887754 1 1 234567777777764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.02 E-value=0.36 Score=46.27 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=49.9
Q ss_pred cccCCCCccEEEEcCc-cCCCCCCCCCCCCCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCC
Q 014120 31 IVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNK 106 (430)
Q Consensus 31 ~l~~~~~L~~L~Ls~~-~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~ 106 (430)
.+..+.+|+.+.+... .......+.++.+|+.+.+..+- +.+ ..+.+|.+|+.+.+... ..+..-.+.+|.+
T Consensus 212 ~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAKVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCCCSEECTTTTTTCTT
T ss_pred ccccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCc----cccceeehhccccccccceeccccccccccc
Confidence 4455778888877653 22233567788888888886541 122 24667888888887542 2233334567778
Q ss_pred cCEEEcCC
Q 014120 107 LKEIKLDS 114 (430)
Q Consensus 107 L~~L~l~~ 114 (430)
|+.+.+..
T Consensus 288 L~~i~l~~ 295 (379)
T 4h09_A 288 LTKVVMDN 295 (379)
T ss_dssp CCEEEECC
T ss_pred cccccccc
Confidence 88777754
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.96 E-value=0.29 Score=46.89 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=50.3
Q ss_pred cccCCCCccEEEEcCc-cCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCcC
Q 014120 31 IVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLK 108 (430)
Q Consensus 31 ~l~~~~~L~~L~Ls~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L~ 108 (430)
.+..+.++....+... .......+..+.+|+.+.+...-..-. ...+.+|..|+.+.+... ..+..-.+.+|.+|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~--~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLG--DGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALK 266 (379)
T ss_dssp ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEEC--TTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCC
T ss_pred cccccccccccccccceeEEeecccccccccceeeeccceeEEc--cccccCCccceEEEcCCCccEeCccccceeehhc
Confidence 4445667777766553 222335677889999998865421100 224668999999988653 223333455677777
Q ss_pred EEEcCC
Q 014120 109 EIKLDS 114 (430)
Q Consensus 109 ~L~l~~ 114 (430)
.+.+..
T Consensus 267 ~i~l~~ 272 (379)
T 4h09_A 267 TLNFYA 272 (379)
T ss_dssp EEEECC
T ss_pred cccccc
Confidence 777653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.52 E-value=0.37 Score=42.00 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CcCceEEccCCCCChHHHHH---HhcCCCccceeccccc
Q 014120 149 KNLTHLRLDGLSITDKWLYN---QISELPFLEYLALHYC 184 (430)
Q Consensus 149 ~~L~~L~L~~~~i~~~~l~~---l~~~~p~Le~L~L~~c 184 (430)
+.|+.|+|++|.|.+..... .+..-..|+.|+++++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 46777777777777644433 3334455777777543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.39 E-value=0.44 Score=38.43 Aligned_cols=51 Identities=22% Similarity=0.121 Sum_probs=33.9
Q ss_pred EEecCCccc--cCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecC
Q 014120 18 LDVGCCRIY--NLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV 70 (430)
Q Consensus 18 L~~~~~~~~--~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~ 70 (430)
++-++.... .+|..+ ..+|++|+|+++.+.. +..|..+++|++|+|++|.+
T Consensus 13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344444444 677543 3468888888876654 35667788888888888866
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.94 E-value=0.17 Score=44.20 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=52.6
Q ss_pred CCCCccEEEEcCc-cCCCC------CCCCCCCCCCEEEEeeecCChHHH---HHHhcCCCCccEEEeeeCCC----CCcc
Q 014120 34 YLKSIYVLDFEFC-KLEPP------RSTVTLFSLRKLCLSFVHVDDEVI---RDMVAGCPLIEYININNCPG----LKSL 99 (430)
Q Consensus 34 ~~~~L~~L~Ls~~-~~~~~------~~~~~l~~L~~L~Ls~~~~~~~~l---~~l~~~~p~Le~L~L~~c~~----l~~l 99 (430)
+-++|+.|+|+++ .+... ..+..-+.|+.|+|++|.+++.+. ...+..-+.|++|+|++|.. ...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3567899999875 44321 233456789999999998876543 34445567799999988752 1111
Q ss_pred --ccCCCCCcCEEEcCCC
Q 014120 100 --QLLGLNKLKEIKLDSN 115 (430)
Q Consensus 100 --~l~~~~~L~~L~l~~c 115 (430)
.+..-..|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 1222356888988764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=76.67 E-value=1.4 Score=35.41 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=34.4
Q ss_pred cEEEEcCccCCCCCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120 39 YVLDFEFCKLEPPRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (430)
Q Consensus 39 ~~L~Ls~~~~~~~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 95 (430)
+.++-++..+........+| +|+.|+|++|.++.-. ...+..+++|+.|+|.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCe
Confidence 35566665554101112344 7999999999874321 23466778888888888754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.06 E-value=47 Score=24.89 Aligned_cols=33 Identities=18% Similarity=-0.059 Sum_probs=16.3
Q ss_pred CCCccEEEEcC-ccCCCCCCCCCCCCCCEEEEee
Q 014120 35 LKSIYVLDFEF-CKLEPPRSTVTLFSLRKLCLSF 67 (430)
Q Consensus 35 ~~~L~~L~Ls~-~~~~~~~~~~~l~~L~~L~Ls~ 67 (430)
|.+|+.+.+-. ........|.+|.+|+.+.+..
T Consensus 19 c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 19 NTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 55565555544 2222234455555555555543
Done!