BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014121
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 132/312 (42%), Gaps = 47/312 (15%)
Query: 137 KHLFAGAVAAAVSRTCVAPLERLKLEYIVR---------GEQKSLFDLIKTIGATQGLKG 187
K AG VAAA+S+T VAP+ER+KL V+ + K + D + I QG
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 188 FWKGNFVNILRTAPFKAINFYAYDTYRNQLLKLSGKDKSTNFERFVXXXXX---XXXXXX 244
FW+GN N++R P +A+NF D Y+ + L G D+ F R+
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQ--IFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 245 XCL--PLDTIRTVMVAPGGEA-----LGGLIGAFRHMIQTEGFFSLYKGLVPSIVSMAPS 297
C PLD RT + A G+ GL + +++G LY+G S+ +
Sbjct: 127 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 298 GAVFYGVYDILKSAYLHSPEGKKRLQNMRKDQDLSALEQLELGPVRTLLYGAIAGCCSEA 357
A ++GVYD K L P+ + + Q ++ A+AG S
Sbjct: 187 RAAYFGVYDTAK-GMLPDPKNVHIIVSWMIAQTVT----------------AVAGLVS-- 227
Query: 358 ATYPFEVVRRQLQMQVCATKLNALATCV-----KIVEQGGVPALYAGLTPSLLQVLPSAA 412
YPF+ VRR++ MQ + + T KI + G A + G ++L+ + A
Sbjct: 228 --YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF 285
Query: 413 ISYFVYEFMKIV 424
+ E K V
Sbjct: 286 VLVLYDEIKKFV 297
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 20/165 (12%)
Query: 266 GLIGAFRHMIQTEGFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYLHSPEGKKRLQNM 325
G+I + + +GF S ++G + +++ P+ A+ + D K +L + K+
Sbjct: 52 GIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY 111
Query: 326 RKDQDLSALEQLELGPVRTLLYGAIAGCCSEAATYPFEVVRRQLQMQV----CATKLNAL 381
L G AG S YP + R +L V + L
Sbjct: 112 FAG---------------NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGL 156
Query: 382 ATCV-KIVEQGGVPALYAGLTPSLLQVLPSAAISYFVYEFMKIVL 425
C+ KI + G+ LY G S+ ++ A + VY+ K +L
Sbjct: 157 GNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 138 HLFAGAVAAAVSRTCVAPLERLKLEYIVRGEQ------KSLFDLIKTIGATQGLKGFWKG 191
L AG+ A++ P + +K+ + + +S + KTI +G++G WKG
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 192 NFVNILRTAPFKAINFYAYDTYRNQLLK--LSGKDKSTNFERFVXXXXXXXXXXXXCLPL 249
N+ R A YD ++ LLK L D + F P+
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH---FTSAFGAGFCTTVIASPV 223
Query: 250 DTIRTVMVAPGGEALGGLIGAFR---HMIQTEGFFSLYKGLVPSIVSMAPSGAVFYGVYD 306
D ++T + ALG A M++ EG + YKG +PS + + V + Y+
Sbjct: 224 DVVKTRYM---NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280
Query: 307 ILKSAYLHSPEGKK 320
LK A + + + ++
Sbjct: 281 QLKRALMAAYQSRE 294
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 112/307 (36%), Gaps = 38/307 (12%)
Query: 135 TTKHLFAGAVAAAVSRTCVAPLERLKLEYIVRGEQKSL------------FDLIKTIGAT 182
T K L AG AA ++ PL+ K+ ++GE + L I T+ T
Sbjct: 2 TVKFLGAG-TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 183 QGLKGFWKGNFVNILRTAPFKAINFYAYDTYRNQLLKLSGKDKSTNFERFVXXXXXXXXX 242
+G + + G + R F ++ YD+ + K G + + R +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRLLAGSTTGALA 118
Query: 243 XXXCLPLDTIRTVMVAP----GGEALGGLIGAFRHMIQTEGFFSLYKGLVPSIVSMAPSG 298
P D ++ A GG + A++ + + EG L+KG P++ A
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 299 AVFYGVYDILKSAYLHSPEGKKRLQNMRKDQDLSALEQLELGPVRTLLYGAIAGCCSEAA 358
YD++K L + N+ D DL G AG C+
Sbjct: 179 CAELVTYDLIKDTLLKA--------NLMTD-DLPCHFTSAFG----------AGFCTTVI 219
Query: 359 TYPFEVVRRQLQMQVCATKLNALATCVKIVEQGGVPALYAGLTPSLLQVLPSAAISYFVY 418
P +VV+ + +A + ++ + G A Y G PS L++ + + Y
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 419 EFMKIVL 425
E +K L
Sbjct: 280 EQLKRAL 286
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 296 PSGAVFYGVYDILKSAYLHSPEGKKRLQNMRK 327
PSGA+ G Y I KS SP G+K +Q+ K
Sbjct: 103 PSGALLCGDYLIAKSIAFISPYGEKVIQDFGK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,773,980
Number of Sequences: 62578
Number of extensions: 457395
Number of successful extensions: 758
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 6
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)