Query 014121
Match_columns 430
No_of_seqs 384 out of 2062
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.3E-55 7.8E-60 426.7 23.6 270 137-427 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 7.4E-55 2.5E-59 421.9 26.3 271 133-425 5-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 6.8E-42 2.3E-46 331.9 13.8 235 68-314 45-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.1E-39 3.7E-44 315.5 17.8 229 68-311 48-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 25.4 48 0.0016 24.4 2.8 34 392-425 33-66 (81)
6 1pxq_A Subtilisin A; thioether 16.6 49 0.0017 19.2 0.9 15 22-36 17-31 (35)
7 1pp9_G Ubiquinol-cytochrome C 15.2 1E+02 0.0035 22.5 2.6 35 391-425 32-66 (81)
8 3vjj_A P9-1; 3.00A {Rice black 14.8 68 0.0023 29.2 1.9 36 353-393 273-308 (368)
9 3cx5_H Cytochrome B-C1 complex 12.8 1.3E+02 0.0043 22.7 2.6 35 391-425 42-76 (93)
10 3tgu_G UQCRQ, mitochondrial ub 11.1 1.7E+02 0.0056 21.4 2.7 35 279-313 33-67 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-55 Score=426.68 Aligned_cols=270 Identities=20% Similarity=0.341 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhCC------------CCCCHHHHHHHHHhhhccccccccchHHHHhHhhhhh
Q 014121 137 KHLFAGAVAAAVSRTCVAPLERLKLEYIVRG------------EQKSLFDLIKTIGATQGLKGFWKGNFVNILRTAPFKA 204 (430)
Q Consensus 137 ~~~~aG~~ag~~~~~i~~Pld~vK~r~Q~~~------------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 204 (430)
.++++|++|++++.++++|+|+||+|+|++. .++++++++++|+++||+++||||+.+++++.+|+.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999964 3689999999999999999999999999999999999
Q ss_pred hhHhhhHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHhhcchhHHhHhhccCCC----CCCCCHHHHHHHHHHhhCc
Q 014121 205 INFYAYDTYRNQLLKLSGKDKSTNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGG----EALGGLIGAFRHMIQTEGF 280 (430)
Q Consensus 205 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~ag~~ag~~a~~v~~Pldvvktr~q~~~~----~~y~~~~~~~~~i~r~eG~ 280 (430)
++|.+||.+|+.+.+.. +..+....+++|++||+++.++++|+|+||+|+|++.. ..|.++++++++|+++||+
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999886532 23567789999999999999999999999999999863 3689999999999999999
Q ss_pred cccccchhHHHHhHhhhHHHHHHHHHHHHHHhccCCcchhhhhccccccchhhhhhhccchHHHHHHHHHHhhhhccccc
Q 014121 281 FSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYLHSPEGKKRLQNMRKDQDLSALEQLELGPVRTLLYGAIAGCCSEAATY 360 (430)
Q Consensus 281 ~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~ 360 (430)
+|||||+.++++|.+|+.+++|.+||.+|+.+.+... ...+....+++|++||++++++++
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-------------------~~~~~~~~~~~g~~ag~~~~~~~~ 221 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-------------------MTDDLPCHFTSAFGAGFCTTVIAS 221 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-------------------CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------------CCCchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999998754321 012345689999999999999999
Q ss_pred cHHHHHHHHhhccccCCCcHHHHHHHHHHhccccccccchHHHHHHHhhhhhHHHHHHHHHHHhhhc
Q 014121 361 PFEVVRRQLQMQVCATKLNALATCVKIVEQGGVPALYAGLTPSLLQVLPSAAISYFVYEFMKIVLKV 427 (430)
Q Consensus 361 PlDvIktr~q~~~~~~~~~~~~~~~~i~r~eGi~glyrG~~~~llr~~p~~~i~~~~ye~lk~~l~~ 427 (430)
|+||||+|||++....+.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+..
T Consensus 222 P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 222 PVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999997777889999999999999999999999999999999999999999999988753
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.4e-55 Score=421.90 Aligned_cols=271 Identities=29% Similarity=0.469 Sum_probs=236.1
Q ss_pred CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCC---------CCCCHHHHHHHHHhhhccccccccchHHHHhHhhhh
Q 014121 133 YNTTKHLFAGAVAAAVSRTCVAPLERLKLEYIVRG---------EQKSLFDLIKTIGATQGLKGFWKGNFVNILRTAPFK 203 (430)
Q Consensus 133 ~~~~~~~~aG~~ag~~~~~i~~Pld~vK~r~Q~~~---------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 203 (430)
.+.+.++++|++|++++.++++|+|+||+|+|++. .++++++++++|+++||++|||||+.+++++.+|+.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35678999999999999999999999999999964 468999999999999999999999999999999999
Q ss_pred hhhHhhhHHHHHHHhhhcCCCCC---ChHHHHHHHHHHHHHHHHhhcchhHHhHhhccCCC-----CCCCCHHHHHHHHH
Q 014121 204 AINFYAYDTYRNQLLKLSGKDKS---TNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGG-----EALGGLIGAFRHMI 275 (430)
Q Consensus 204 ~~~f~~y~~~k~~l~~~~~~~~~---~~~~~~~ag~~ag~~a~~v~~Pldvvktr~q~~~~-----~~y~~~~~~~~~i~ 275 (430)
+++|.+||.+|+.+.+..+.+.. .....+++|++||+++.++++|+|+||+|+|++.. ..|.++++|+++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999965432222211 23567899999999999999999999999999753 46899999999999
Q ss_pred HhhCccccccchhHHHHhHhhhHHHHHHHHHHHHHHhccCCcchhhhhccccccchhhhhhhccchHHHHHHHHHHhhhh
Q 014121 276 QTEGFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYLHSPEGKKRLQNMRKDQDLSALEQLELGPVRTLLYGAIAGCCS 355 (430)
Q Consensus 276 r~eG~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a 355 (430)
++||++|||||+.++++|.+|+.+++|.+||.+|+.+.+.. ..+....+++|++||+++
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---------------------~~~~~~~~~~g~~ag~~a 223 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---------------------NVHIIVSWMIAQTVTAVA 223 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---------------------CSCHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---------------------CccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998653210 123566789999999999
Q ss_pred ccccccHHHHHHHHhhccc-----cCCCcHHHHHHHHHHhccccccccchHHHHHHHhhhhhHHHHHHHHHHHhh
Q 014121 356 EAATYPFEVVRRQLQMQVC-----ATKLNALATCVKIVEQGGVPALYAGLTPSLLQVLPSAAISYFVYEFMKIVL 425 (430)
Q Consensus 356 ~~~t~PlDvIktr~q~~~~-----~~~~~~~~~~~~i~r~eGi~glyrG~~~~llr~~p~~~i~~~~ye~lk~~l 425 (430)
+++++|+||||+|||++.. ..+.+.++|+++|+|+||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 224 ~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 224 GLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999999999999753 246799999999999999999999999999996 56899999999998764
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.8e-42 Score=331.88 Aligned_cols=235 Identities=22% Similarity=0.328 Sum_probs=204.8
Q ss_pred ccccccchhhhhhcccCCCCcccccccccCCCCCCCCCchhhHHHHHHHHHhcCCchhhh---hccCCCChHHHHHHHHH
Q 014121 68 RRGCGFLSVSLSMKGSGEGYVGESTESWGQNGNSKGGEEEEDEEVEEQMVAFKGGKKVEE---KQLGAYNTTKHLFAGAV 144 (430)
Q Consensus 68 ~~y~g~~~~~~~i~r~~eG~~~~~~~lw~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~aG~~ 144 (430)
.+|+|+++++.+|.|+ ||+ ++||||..+. .....+.....+..++...+ ......+....+++|++
T Consensus 45 ~~~~~~~~~~~~i~~~-eG~----~glyrG~~~~------l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ 113 (303)
T 2lck_A 45 AQYRGVLGTILTMVRT-EGP----RSLYNGLVAG------LQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGST 113 (303)
T ss_dssp SSCSCHHHHHHHHHHH-HCH----HHHHSSHHHH------HHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh-hCH----HHHHcCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHH
Confidence 3799999999999999 999 9999999887 55555555444444333322 11123677899999999
Q ss_pred HHHHHHHhhccHHHHHHHHHhCC------CCCCHHHHHHHHHhhhccccccccchHHHHhHhhhhhhhHhhhHHHHHHHh
Q 014121 145 AAAVSRTCVAPLERLKLEYIVRG------EQKSLFDLIKTIGATQGLKGFWKGNFVNILRTAPFKAINFYAYDTYRNQLL 218 (430)
Q Consensus 145 ag~~~~~i~~Pld~vK~r~Q~~~------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y~~~k~~l~ 218 (430)
|++++.++++|+|+||+|+|++. .++++++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.
T Consensus 114 ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~ 193 (303)
T 2lck_A 114 TGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193 (303)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 478999999999999999999999999999999999999999999999876
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHHHHhhcchhHHhHhhccCCCCCCCCHHHHHHHHHHhhCccccccchhHHHHhHhhhH
Q 014121 219 KLSGKDKSTNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGGEALGGLIGAFRHMIQTEGFFSLYKGLVPSIVSMAPSG 298 (430)
Q Consensus 219 ~~~~~~~~~~~~~~~ag~~ag~~a~~v~~Pldvvktr~q~~~~~~y~~~~~~~~~i~r~eG~~glyrG~~~~llr~~~~~ 298 (430)
+... ...+....+++|++||++++++++|+|+||+|||++....|.++++|+++|+++||++|||||+.|+++|.+|..
T Consensus 194 ~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~ 272 (303)
T 2lck_A 194 KANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWN 272 (303)
T ss_dssp TTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHH
T ss_pred hccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHH
Confidence 5322 234566889999999999999999999999999998877899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 014121 299 AVFYGVYDILKSAYLH 314 (430)
Q Consensus 299 ~i~f~~ye~lk~~~~~ 314 (430)
+++|.+||.+|+++.+
T Consensus 273 ~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 273 VVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-39 Score=315.47 Aligned_cols=229 Identities=21% Similarity=0.292 Sum_probs=192.0
Q ss_pred ccccccchhhhhhcccCCCCcccccccccCCCCCCCCCchhhHHHHHHHHHhcCCchhhh----hccCC----CChHHHH
Q 014121 68 RRGCGFLSVSLSMKGSGEGYVGESTESWGQNGNSKGGEEEEDEEVEEQMVAFKGGKKVEE----KQLGA----YNTTKHL 139 (430)
Q Consensus 68 ~~y~g~~~~~~~i~r~~eG~~~~~~~lw~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~ 139 (430)
++|+|++|++.+|.|+ ||+ ++||||..+. .....+.....+..++...+ ..... .....++
T Consensus 48 ~~~~~~~~~~~~i~~~-eG~----~glyrG~~~~------l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~ 116 (297)
T 1okc_A 48 KQYKGIIDCVVRIPKE-QGF----LSFWRGNLAN------VIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNL 116 (297)
T ss_dssp GSCCSHHHHHHHHHHH-HCG----GGGGTTTHHH------HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHH
T ss_pred cccccHHHHHHHHHhc-cch----hheecccHHH------HHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHH
Confidence 4799999999999999 999 9999999887 55554444444433333222 11111 1346789
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhCC-------CCCCHHHHHHHHHhhhccccccccchHHHHhHhhhhhhhHhhhHH
Q 014121 140 FAGAVAAAVSRTCVAPLERLKLEYIVRG-------EQKSLFDLIKTIGATQGLKGFWKGNFVNILRTAPFKAINFYAYDT 212 (430)
Q Consensus 140 ~aG~~ag~~~~~i~~Pld~vK~r~Q~~~-------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y~~ 212 (430)
++|++|++++.++++|+|+||+|+|++. .++++++++++|+++||++|||||+.+++++.+|..+++|.+||.
T Consensus 117 ~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~ 196 (297)
T 1okc_A 117 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT 196 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999963 468999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHhhcchhHHhHhhccCCC-----CCCCCHHHHHHHHHHhhCccccccch
Q 014121 213 YRNQLLKLSGKDKSTNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGG-----EALGGLIGAFRHMIQTEGFFSLYKGL 287 (430)
Q Consensus 213 ~k~~l~~~~~~~~~~~~~~~~ag~~ag~~a~~v~~Pldvvktr~q~~~~-----~~y~~~~~~~~~i~r~eG~~glyrG~ 287 (430)
+|+.+.+. +..+....+++|++||++++++++|+|+||+|||++.. ..|.++++|+++|+++||++|||||+
T Consensus 197 ~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 273 (297)
T 1okc_A 197 AKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 273 (297)
T ss_dssp HHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTH
T ss_pred HHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecch
Confidence 99976432 23456788999999999999999999999999998753 25899999999999999999999999
Q ss_pred hHHHHhHhhhHHHHHHHHHHHHHH
Q 014121 288 VPSIVSMAPSGAVFYGVYDILKSA 311 (430)
Q Consensus 288 ~~~llr~~~~~~i~f~~ye~lk~~ 311 (430)
.|+++|. +..+++|.+||.+|++
T Consensus 274 ~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 274 WSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHhh-ccceeeehHHHHHHhh
Confidence 9999996 5789999999998864
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=25.36 E-value=48 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.438 Sum_probs=27.6
Q ss_pred cccccccchHHHHHHHhhhhhHHHHHHHHHHHhh
Q 014121 392 GVPALYAGLTPSLLQVLPSAAISYFVYEFMKIVL 425 (430)
Q Consensus 392 Gi~glyrG~~~~llr~~p~~~i~~~~ye~lk~~l 425 (430)
|+...+|-+...++.++|..++.+.+|++.++..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4555566677888999999999999999988765
No 6
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=16.56 E-value=49 Score=19.22 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=13.0
Q ss_pred CCCCCCCCCcccccc
Q 014121 22 PSDHRHRPFAFGGLF 36 (430)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (430)
-+|||.+--.++|||
T Consensus 17 gpipdfeva~~aglf 31 (35)
T 1pxq_A 17 GPIPDFEIAGAXGLF 31 (35)
T ss_dssp TTCCCSCCSCTTHHH
T ss_pred CCCCCchhhhhhhhc
Confidence 389999999999987
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.20 E-value=1e+02 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=28.3
Q ss_pred ccccccccchHHHHHHHhhhhhHHHHHHHHHHHhh
Q 014121 391 GGVPALYAGLTPSLLQVLPSAAISYFVYEFMKIVL 425 (430)
Q Consensus 391 eGi~glyrG~~~~llr~~p~~~i~~~~ye~lk~~l 425 (430)
.|+...+|-+.-.++.++|..++.+.+|+..++..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 34556666777888899999999999999988765
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.82 E-value=68 Score=29.21 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=26.3
Q ss_pred hhhccccccHHHHHHHHhhccccCCCcHHHHHHHHHHhccc
Q 014121 353 CCSEAATYPFEVVRRQLQMQVCATKLNALATCVKIVEQGGV 393 (430)
Q Consensus 353 ~~a~~~t~PlDvIktr~q~~~~~~~~~~~~~~~~i~r~eGi 393 (430)
.++++=.||||.+|-.++..- +....+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli-----stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI-----STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC-----CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc-----cChHHHHHHHHhcCc
Confidence 356777899999998777643 445677788888764
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=12.76 E-value=1.3e+02 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.5
Q ss_pred ccccccccchHHHHHHHhhhhhHHHHHHHHHHHhh
Q 014121 391 GGVPALYAGLTPSLLQVLPSAAISYFVYEFMKIVL 425 (430)
Q Consensus 391 eGi~glyrG~~~~llr~~p~~~i~~~~ye~lk~~l 425 (430)
.|+...+|-+.-+++.++|..++.+.+|+..++..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 46677777788888899999999999999888765
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=11.09 E-value=1.7e+02 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=26.5
Q ss_pred CccccccchhHHHHhHhhhHHHHHHHHHHHHHHhc
Q 014121 279 GFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYL 313 (430)
Q Consensus 279 G~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~ 313 (430)
|+...+|-+...++..+|..++.+.+|++.++...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 34444555667788899999999999999887643
Done!