Query 014122
Match_columns 430
No_of_seqs 215 out of 2382
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 3.3E-51 7.1E-56 380.3 29.7 359 35-426 65-462 (476)
2 KOG1427 Uncharacterized conser 100.0 9.7E-46 2.1E-50 322.5 21.8 368 34-429 16-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.8E-43 8.3E-48 326.5 27.4 331 17-364 104-463 (476)
4 KOG1427 Uncharacterized conser 100.0 9.8E-41 2.1E-45 291.2 18.7 334 5-364 43-397 (443)
5 KOG0783 Uncharacterized conser 100.0 2.4E-29 5.1E-34 245.3 15.2 298 36-366 140-450 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 1.9E-25 4.1E-30 226.0 21.6 374 9-426 469-892 (3738)
7 KOG0783 Uncharacterized conser 99.9 4.9E-25 1.1E-29 215.4 15.3 271 85-374 137-416 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 2.6E-19 5.6E-24 182.2 20.8 299 18-336 526-870 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 1.5E-12 3.3E-17 87.9 4.9 50 365-426 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.1E-11 2.5E-16 83.5 5.2 50 37-86 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 3.4E-10 7.3E-15 66.4 4.6 30 290-319 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.0 3.1E-10 6.7E-15 66.5 4.2 30 179-208 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 2.7E-11 5.8E-16 121.1 -8.5 147 168-374 5-153 (850)
14 KOG0941 E3 ubiquitin protein l 98.8 7.4E-11 1.6E-15 118.0 -7.3 144 61-207 4-156 (850)
15 PF11725 AvrE: Pathogenicity f 95.0 0.53 1.2E-05 52.5 14.3 287 72-428 490-813 (1774)
16 KOG0646 WD40 repeat protein [G 93.9 6 0.00013 38.4 16.9 155 121-312 80-244 (476)
17 PF11725 AvrE: Pathogenicity f 93.9 0.85 1.8E-05 51.0 12.6 114 231-366 696-815 (1774)
18 KOG3669 Uncharacterized conser 92.6 6 0.00013 39.6 15.0 107 130-262 190-299 (705)
19 cd00200 WD40 WD40 domain, foun 92.3 8 0.00017 34.5 29.2 103 24-150 17-123 (289)
20 KOG3669 Uncharacterized conser 91.9 2.3 4.9E-05 42.5 11.3 107 184-311 190-298 (705)
21 KOG0943 Predicted ubiquitin-pr 91.6 0.014 3E-07 61.8 -4.1 132 124-267 375-507 (3015)
22 KOG0315 G-protein beta subunit 91.4 10 0.00023 34.0 18.1 111 176-315 85-197 (311)
23 KOG0943 Predicted ubiquitin-pr 91.3 0.034 7.5E-07 59.0 -1.6 130 71-205 374-506 (3015)
24 cd00200 WD40 WD40 domain, foun 89.9 14 0.0003 32.9 24.1 106 72-203 95-206 (289)
25 KOG0315 G-protein beta subunit 89.4 16 0.00034 32.9 18.3 144 86-264 48-196 (311)
26 KOG0646 WD40 repeat protein [G 89.3 9.5 0.00021 37.1 12.7 168 23-204 130-307 (476)
27 KOG0291 WD40-repeat-containing 87.9 38 0.00082 35.4 23.3 105 34-152 315-424 (893)
28 PF04841 Vps16_N: Vps16, N-ter 85.3 41 0.00088 33.2 26.4 196 123-374 81-287 (410)
29 PF07569 Hira: TUP1-like enhan 83.8 6.3 0.00014 35.2 8.1 31 121-151 11-41 (219)
30 PF07569 Hira: TUP1-like enhan 83.2 6.9 0.00015 34.9 8.2 29 177-205 13-41 (219)
31 KOG1408 WD40 repeat protein [F 83.0 21 0.00046 37.0 12.0 26 124-149 219-248 (1080)
32 KOG1900 Nuclear pore complex, 81.8 62 0.0013 36.2 15.6 218 84-314 93-339 (1311)
33 KOG0291 WD40-repeat-containing 81.3 75 0.0016 33.4 23.7 121 73-206 300-424 (893)
34 PF04841 Vps16_N: Vps16, N-ter 79.9 66 0.0014 31.8 18.8 70 71-149 81-154 (410)
35 TIGR01063 gyrA DNA gyrase, A s 79.0 1E+02 0.0022 33.4 20.1 173 16-203 534-717 (800)
36 COG4257 Vgb Streptogramin lyas 77.9 54 0.0012 30.2 11.7 119 9-148 85-206 (353)
37 smart00706 TECPR Beta propelle 74.1 7.4 0.00016 23.1 3.9 25 123-147 8-33 (35)
38 smart00706 TECPR Beta propelle 70.9 8.5 0.00018 22.8 3.6 24 72-95 9-33 (35)
39 PRK05560 DNA gyrase subunit A; 69.3 1.8E+02 0.0038 31.7 20.8 220 72-316 538-773 (805)
40 TIGR03300 assembly_YfgL outer 68.1 92 0.002 30.0 12.3 56 248-312 321-376 (377)
41 PHA02713 hypothetical protein; 67.7 88 0.0019 32.3 12.4 20 131-150 341-360 (557)
42 TIGR01063 gyrA DNA gyrase, A s 65.4 2.1E+02 0.0045 31.1 22.0 218 72-316 536-770 (800)
43 PRK13979 DNA topoisomerase IV 64.8 2.3E+02 0.005 31.4 21.9 132 72-212 553-697 (957)
44 PLN00181 protein SPA1-RELATED; 64.6 2.1E+02 0.0046 31.0 30.5 114 20-150 487-606 (793)
45 COG4257 Vgb Streptogramin lyas 63.4 1.1E+02 0.0023 28.4 10.3 137 29-201 64-205 (353)
46 PF12341 DUF3639: Protein of u 59.2 29 0.00062 19.5 3.8 25 177-201 2-26 (27)
47 PRK05560 DNA gyrase subunit A; 57.9 2.8E+02 0.0061 30.2 21.0 172 16-202 536-719 (805)
48 PHA03098 kelch-like protein; P 56.9 2.3E+02 0.005 28.9 15.1 14 84-97 289-302 (534)
49 PHA02713 hypothetical protein; 56.0 2.5E+02 0.0054 29.0 15.1 14 360-373 507-520 (557)
50 TIGR03300 assembly_YfgL outer 54.4 2.1E+02 0.0045 27.6 13.3 15 248-262 362-376 (377)
51 KOG0282 mRNA splicing factor [ 52.8 2.5E+02 0.0053 28.0 18.0 238 30-321 229-468 (503)
52 PF07250 Glyoxal_oxid_N: Glyox 52.6 58 0.0013 29.5 7.0 77 75-151 113-190 (243)
53 PF06739 SBBP: Beta-propeller 48.6 20 0.00042 21.9 2.4 18 82-99 16-33 (38)
54 KOG1900 Nuclear pore complex, 47.7 3.5E+02 0.0076 30.7 12.8 61 136-205 93-158 (1311)
55 PF06433 Me-amine-dh_H: Methyl 46.2 68 0.0015 30.6 6.6 176 181-373 32-212 (342)
56 KOG0296 Angio-associated migra 44.4 3E+02 0.0064 26.5 26.2 120 12-155 60-183 (399)
57 KOG1034 Transcriptional repres 42.7 46 0.001 31.2 4.8 66 23-96 314-381 (385)
58 KOG4441 Proteins containing BT 42.0 2E+02 0.0042 29.9 9.9 102 36-151 331-437 (571)
59 KOG1240 Protein kinase contain 41.7 3.8E+02 0.0083 30.3 11.8 116 21-150 1053-1181(1431)
60 PF07250 Glyoxal_oxid_N: Glyox 40.7 2.8E+02 0.0061 25.1 11.9 21 296-316 118-138 (243)
61 PRK11138 outer membrane biogen 39.2 3.7E+02 0.008 26.1 12.3 18 296-313 375-392 (394)
62 KOG4441 Proteins containing BT 39.1 4.6E+02 0.01 27.2 12.2 21 353-373 509-530 (571)
63 KOG0278 Serine/threonine kinas 39.0 3E+02 0.0066 25.1 12.0 81 61-155 135-218 (334)
64 PF03785 Peptidase_C25_C: Pept 37.8 80 0.0017 23.0 4.4 42 113-155 7-49 (81)
65 PF03785 Peptidase_C25_C: Pept 37.6 59 0.0013 23.7 3.7 41 280-320 8-49 (81)
66 PHA03098 kelch-like protein; P 36.4 3.8E+02 0.0083 27.3 11.1 14 84-97 384-397 (534)
67 COG5308 NUP170 Nuclear pore co 35.1 4.1E+02 0.0089 29.0 10.6 65 83-149 95-159 (1263)
68 KOG2111 Uncharacterized conser 35.0 3.9E+02 0.0085 25.2 12.4 27 121-148 93-119 (346)
69 PF07646 Kelch_2: Kelch motif; 33.9 40 0.00087 21.5 2.3 16 358-373 4-19 (49)
70 KOG1274 WD40 repeat protein [G 33.6 6.6E+02 0.014 27.4 20.9 70 78-149 13-85 (933)
71 PLN02153 epithiospecifier prot 33.6 4.2E+02 0.0091 25.1 15.0 15 189-203 308-322 (341)
72 PF01436 NHL: NHL repeat; Int 33.5 79 0.0017 17.5 3.2 17 134-150 5-21 (28)
73 KOG2106 Uncharacterized conser 33.5 5.2E+02 0.011 26.1 15.9 61 124-203 213-274 (626)
74 PLN02153 epithiospecifier prot 32.2 4.4E+02 0.0096 24.9 22.6 17 187-204 130-146 (341)
75 PF13418 Kelch_4: Galactose ox 31.3 51 0.0011 20.9 2.5 18 186-203 3-20 (49)
76 KOG0276 Vesicle coat complex C 30.2 6.5E+02 0.014 26.3 18.7 100 71-196 14-117 (794)
77 KOG1034 Transcriptional repres 29.6 1.2E+02 0.0026 28.6 5.3 59 189-264 322-382 (385)
78 PLN02193 nitrile-specifier pro 28.8 6.1E+02 0.013 25.5 15.3 16 358-373 370-385 (470)
79 PLN03215 ascorbic acid mannose 28.6 2.4E+02 0.0052 27.4 7.4 61 73-148 162-225 (373)
80 KOG1332 Vesicle coat complex C 28.4 2.9E+02 0.0062 25.2 7.1 69 25-102 220-290 (299)
81 PF06433 Me-amine-dh_H: Methyl 27.8 5.5E+02 0.012 24.6 9.7 115 78-203 94-212 (342)
82 PRK13979 DNA topoisomerase IV 27.7 9E+02 0.019 27.0 21.1 125 128-271 559-695 (957)
83 PRK14131 N-acetylneuraminic ac 27.0 5.8E+02 0.013 24.6 18.2 18 187-204 131-148 (376)
84 KOG0282 mRNA splicing factor [ 26.8 6.5E+02 0.014 25.2 10.5 26 131-156 443-468 (503)
85 PF14517 Tachylectin: Tachylec 26.8 4.7E+02 0.01 23.5 10.6 116 74-199 73-201 (229)
86 KOG0307 Vesicle coat complex C 26.4 3.3E+02 0.0072 30.1 8.5 37 178-214 255-294 (1049)
87 TIGR01062 parC_Gneg DNA topois 26.3 8.4E+02 0.018 26.3 15.9 149 83-262 497-651 (735)
88 PF13964 Kelch_6: Kelch motif 26.0 64 0.0014 20.6 2.2 16 358-373 4-19 (50)
89 KOG2280 Vacuolar assembly/sort 25.9 8.4E+02 0.018 26.1 17.2 66 288-373 217-286 (829)
90 PHA02790 Kelch-like protein; P 25.7 1.6E+02 0.0035 29.7 6.1 17 82-98 355-371 (480)
91 PF13854 Kelch_5: Kelch motif 25.1 80 0.0017 19.4 2.5 16 358-373 7-22 (42)
92 KOG2055 WD40 repeat protein [G 25.0 7E+02 0.015 24.9 17.3 93 187-313 357-453 (514)
93 KOG0289 mRNA splicing factor [ 24.5 5E+02 0.011 25.7 8.5 103 249-371 307-416 (506)
94 KOG1274 WD40 repeat protein [G 24.0 9.7E+02 0.021 26.2 21.8 138 30-204 27-168 (933)
95 PLN03215 ascorbic acid mannose 22.5 3.5E+02 0.0076 26.3 7.3 62 178-263 161-225 (373)
96 TIGR03548 mutarot_permut cycli 22.4 6.5E+02 0.014 23.5 12.9 19 132-150 162-180 (323)
97 PF06204 CBM_X: Putative carbo 22.1 2.8E+02 0.0061 19.3 4.9 30 123-152 25-54 (66)
98 KOG1240 Protein kinase contain 21.0 1.3E+03 0.028 26.5 12.4 120 177-316 1049-1182(1431)
99 KOG2444 WD40 repeat protein [G 20.8 2E+02 0.0044 25.7 4.8 64 76-149 66-131 (238)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.3e-51 Score=380.26 Aligned_cols=359 Identities=28% Similarity=0.484 Sum_probs=290.7
Q ss_pred cCCcEEEEEEcCCCCccCCCCCCCc-ccceeeCcc--CCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCC----
Q 014122 35 LQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE---- 107 (430)
Q Consensus 35 ~~~~~v~~wG~n~~G~LG~~~~~~~-~~p~~v~~~--~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~---- 107 (430)
.+...||+||.|...+||.+..+.. ..|+..++. +...|++++||+.|+++|++||+||+||.|..|+||...
T Consensus 65 ~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~ 144 (476)
T COG5184 65 VKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDI 144 (476)
T ss_pred hheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccccc
Confidence 3678999999999999999986665 899999988 667899999999999999999999999999999999875
Q ss_pred -----------CCCccccceEeccC-----CCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCc----cccc
Q 014122 108 -----------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK----VIPI 167 (430)
Q Consensus 108 -----------~~~~~~~p~~i~~l-----~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~----~~~~ 167 (430)
......+|.+++.. +.++++++||++++++|+++|+||+||....+.++.+....+ ...+
T Consensus 145 ~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~ 224 (476)
T COG5184 145 CDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFT 224 (476)
T ss_pred ccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeee
Confidence 33446778888751 338999999999999999999999999999999888855443 2355
Q ss_pred ceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC
Q 014122 168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247 (430)
Q Consensus 168 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 247 (430)
|.++. ...|+++++|.+|.++|+++|+||.||.+..||||+...+... .....|+.+.. ..|..|+||.
T Consensus 225 p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~-----~~~lv~~~f~i---~~i~~vacG~ 293 (476)
T COG5184 225 PLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLK-----LVVLVGDPFAI---RNIKYVACGK 293 (476)
T ss_pred eeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcc-----cccccCChhhh---hhhhhcccCc
Confidence 55554 4579999999999999999999999999999999998764321 11122222221 2488999999
Q ss_pred CeEEEEecCCcEEEEecCCCCccccCCC----CCCCCCeeecCCC--CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCC
Q 014122 248 LHSACIDENGRVYIFGDRAVDKMLFQEG----NHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLG 321 (430)
Q Consensus 248 ~~~~~lt~~g~vy~wG~~~~gqlg~~~~----~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG 321 (430)
+|+++|+++|++|+||.|.++|++.++. .....|....... .|..+++|..|+++|..+|.||.||.++.+|||
T Consensus 294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg 373 (476)
T COG5184 294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373 (476)
T ss_pred ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence 9999999999999999999999998822 1123333333333 389999999999999999999999999999999
Q ss_pred CCC--CCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCC-C
Q 014122 322 IGS--IDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGND-V 397 (430)
Q Consensus 322 ~~~--~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~-~ 397 (430)
... +.....|.++.. ..++..++||..|.++.+ +|+||.||+ |++||||.++. .
T Consensus 374 ~~~~~~~~~~~~~~ls~----------~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~~~~ 431 (476)
T COG5184 374 IQEEITIDVSTPTKLSV----------AIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGPKEA 431 (476)
T ss_pred CcccceeecCCcccccc----------ccceEEEEecCccceeeccCCceEEecC------------chhhhccCCchhh
Confidence 987 555555555542 134666999999999999 999999999 69999999986 4
Q ss_pred CccccEEEEe--cCCeeEEEEeccCCceEEE
Q 014122 398 DYIHPTIVNF--GENVKALQVSCGFNHTGAL 426 (430)
Q Consensus 398 ~~~~p~~v~~--~~~~~v~~i~~G~~~t~~l 426 (430)
....|+.++. +....++..-||+.+.++.
T Consensus 432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~ 462 (476)
T COG5184 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIE 462 (476)
T ss_pred hccccccccccccCCCceEEeccCcceEEEe
Confidence 6778888873 5677787777777766654
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=9.7e-46 Score=322.48 Aligned_cols=368 Identities=24% Similarity=0.392 Sum_probs=304.8
Q ss_pred ccCCcEEEEEEcCCCCccCCCC---CCCcccceeeCccCCCceEEEEeC--CcceEEEECCCCEEEEecCCCCccccCCC
Q 014122 34 TLQRRFAALWGNGDYGRLGLGS---LESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISEN 108 (430)
Q Consensus 34 ~~~~~~v~~wG~n~~G~LG~~~---~~~~~~p~~v~~~~~~~I~~i~~G--~~~~~~lt~~G~vy~wG~n~~g~lg~~~~ 108 (430)
....|++..+|.-.-.+.|..+ ..+...|.++..+.+.+|+-|+.| .-|+++|+-+|+.|.||.|..||||.+ +
T Consensus 16 e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg-D 94 (443)
T KOG1427|consen 16 EEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG-D 94 (443)
T ss_pred hcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc-c
Confidence 4456777777766655555443 335789999999999999999977 569999999999999999999999999 6
Q ss_pred CCccccceEeccCCC-cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc
Q 014122 109 IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (430)
Q Consensus 109 ~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 187 (430)
......|+.|+.|.. +|++.+||++|+++|+++|+||.||.|.+||||+++........| +.......|+.|+||.+
T Consensus 95 ~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~--~~~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 95 MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTP--LPCVVSDEVTNVACGAD 172 (443)
T ss_pred hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCC--CccccCccceeeccccc
Confidence 666788999999887 999999999999999999999999999999999998776443333 22335567999999999
Q ss_pred eeEEEEcCCcEEEeecCCCCCCCCCCCCccccc-----cccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEE
Q 014122 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF-----LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (430)
Q Consensus 188 ~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~-----~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 262 (430)
|++.|+..+.+..+|.-.|||||++.....+-. .-......|..|..+...+|++++||.+|+++++++++||.|
T Consensus 173 ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysW 252 (443)
T KOG1427|consen 173 FTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSW 252 (443)
T ss_pred eEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEe
Confidence 999999999999999999999999875433211 111224457778888889999999999999999999999999
Q ss_pred ecCCCCccccCCCCCCCCCeeecCCCC----eeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCC
Q 014122 263 GDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338 (430)
Q Consensus 263 G~~~~gqlg~~~~~~~~~p~~i~~~~~----i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~ 338 (430)
|..-+|.||..+..+...|++++.++. -.++.||+..++++.+-|+||.||.+.. +.+...+|.++.. +
T Consensus 253 GFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~d-l 325 (443)
T KOG1427|consen 253 GFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMD-L 325 (443)
T ss_pred ccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhh-c
Confidence 999999999999999999999887662 6789999999999999999999998763 2233455666664 5
Q ss_pred CCCCcccccceEEEEeecCceeEEEECCceEEEecCCCCCccccCCCCCCCccCCcC-CCCccccEEEEecCCeeEEEEe
Q 014122 339 SESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGN-DVDYIHPTIVNFGENVKALQVS 417 (430)
Q Consensus 339 ~~~~i~~~~~~v~~i~~G~~h~~~l~~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~-~~~~~~p~~v~~~~~~~v~~i~ 417 (430)
...++.. +-++..|.++-.|.....||.. -..+.||-++ +.+...|..|+.+.++++.+++
T Consensus 326 sgwnl~~-------~~~~~~h~~v~ad~s~i~wg~~-----------~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~Va 387 (443)
T KOG1427|consen 326 SGWNLRW-------MDSGSMHHFVGADSSCISWGHA-----------QYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVA 387 (443)
T ss_pred CCccCCC-------cCccceeeeecccccccccccc-----------cccccccCccccccccCccccchhcceecccee
Confidence 6666777 9999999877669999999984 2555566655 4677789999999999999999
Q ss_pred ccCCceEEEEee
Q 014122 418 CGFNHTGALLEY 429 (430)
Q Consensus 418 ~G~~~t~~l~~~ 429 (430)
||+.|+.+|+++
T Consensus 388 mGysHs~vivd~ 399 (443)
T KOG1427|consen 388 MGYSHSMVIVDR 399 (443)
T ss_pred eccceEEEEEcc
Confidence 999999999975
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.8e-43 Score=326.53 Aligned_cols=331 Identities=27% Similarity=0.421 Sum_probs=264.5
Q ss_pred eeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCC-------------CC---cccceeeCcc----CCCceEEE
Q 014122 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL-------------ES---RWRPVVCSAF----EKHSLKAL 76 (430)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~-------------~~---~~~p~~v~~~----~~~~I~~i 76 (430)
-.++..++|..|+..+. .|+.||.||.|..|+||.... .+ ...|..++.. ...+++++
T Consensus 104 ~~i~~~acGg~hsl~ld--~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l 181 (476)
T COG5184 104 ASIIKIACGGNHSLGLD--HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKL 181 (476)
T ss_pred eeeEEeecCCceEEeec--CCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEe
Confidence 55677889988888887 999999999999999998761 12 4678888773 23479999
Q ss_pred EeCCcceEEEECCCCEEEEecCCCCccccCCC-CC----ccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCC
Q 014122 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISEN-IG----YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 77 ~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~-~~----~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (430)
+||++++++|+++|+||.||....+.++.+.. .. ...+|..++ ...|+++++|.+|.++|+++|++|.||+|.
T Consensus 182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~q 259 (476)
T COG5184 182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQ 259 (476)
T ss_pred ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCc
Confidence 99999999999999999999988887776621 11 234455544 458999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccceEEec-cCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcc
Q 014122 152 NGQLGLGKKAAKVIPIPTKVEC-LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (430)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~ 230 (430)
.||||.....+. ..+..+.. +.-..|+.|+||.+|+++|+++|+||+||.|.++|+|.++. ... ......|.
T Consensus 260 kgqlG~~~~e~~--~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~-~~~----~a~~tk~~ 332 (476)
T COG5184 260 KGQLGRPTSERL--KLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSD-GEI----GALTTKPN 332 (476)
T ss_pred ccccCCchhhhc--ccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcc-ccc----ceeecccc
Confidence 999998877653 22222221 11123889999999999999999999999999999999832 111 13344555
Q ss_pred eeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCC--CCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCC
Q 014122 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE--GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGE 308 (430)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~--~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~ 308 (430)
....+....|..++++..|+++|..+|.||.||.+..+|+|..+ ......|.++....++.+++||..|.++.+.+|.
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gs 412 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGS 412 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCc
Confidence 55666666799999999999999999999999999999999998 7788889999988999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCC-CCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE
Q 014122 309 LYTWGSNENGCLGIGSI-DVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS 364 (430)
Q Consensus 309 v~~wG~n~~gqLG~~~~-~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~ 364 (430)
||.||.+++|+||.++. .....|+.+..++... .+++..-+|....+...
T Consensus 413 vy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~------~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 413 VYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSG------HNIILAGYGNQFSVIEE 463 (476)
T ss_pred eEEecCchhhhccCCchhhhccccccccccccCC------CceEEeccCcceEEEec
Confidence 99999999999999865 4456677776533221 23444667777666654
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=9.8e-41 Score=291.20 Aligned_cols=334 Identities=27% Similarity=0.400 Sum_probs=270.1
Q ss_pred chhhhhhhcccc-eeeeccc--cceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc
Q 014122 5 SLTAMTKYYLKQ-DIKLGSK--LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA 81 (430)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~ 81 (430)
+|..+.+|.+.. +.+.-++ +...|..++. =+++.|.||.|..||||+++...+..|+.|+.++..+|++.+||++
T Consensus 43 NL~sphR~~~l~gv~iR~VasG~~aaH~vli~--megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~Grn 120 (443)
T KOG1427|consen 43 NLVSPHRLRPLVGVNIRFVASGCAAAHCVLID--MEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRN 120 (443)
T ss_pred ccccceeccccccceEEEEecccchhhEEEEe--cccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccC
Confidence 344455555443 2233333 3345777776 6789999999999999999988899999999999999999999999
Q ss_pred ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCC
Q 014122 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161 (430)
Q Consensus 82 ~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~ 161 (430)
|+++||.+|.||.||.|.+||||+++.......|.++......|+.|+||.+|++.|+..+.+.++|.-.+||||.+...
T Consensus 121 HTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~ 200 (443)
T KOG1427|consen 121 HTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDN 200 (443)
T ss_pred cEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcch
Confidence 99999999999999999999999998666665665555456699999999999999999999999999999999997654
Q ss_pred C------------cccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCc
Q 014122 162 A------------KVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (430)
Q Consensus 162 ~------------~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p 229 (430)
. +..|.|..+..+.++.|++++||.+|+++++++++||+||.+.||+||+... .+...|
T Consensus 201 ~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEq---------KDEmvp 271 (443)
T KOG1427|consen 201 EFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQ---------KDEMVP 271 (443)
T ss_pred hhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccc---------hhhHHH
Confidence 3 2356788888889999999999999999999999999999999999999875 677888
Q ss_pred ceeeccc--CccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC--CeeeEEeeCCeEEEEEc
Q 014122 230 RLIKELE--GVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTS 305 (430)
Q Consensus 230 ~~i~~~~--~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~ 305 (430)
++++.++ ..--..+.||+.+++.+.+-|.||.||.+.. +.+.--.|.++..+. ++..+.++..|.+ +..
T Consensus 272 Rlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~a 344 (443)
T KOG1427|consen 272 RLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGA 344 (443)
T ss_pred HHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee-ecc
Confidence 8887554 2335678999999999999999999998762 223334455555444 7899999988865 566
Q ss_pred CCCEEEEeCCCCCCCCCC-C-CCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE
Q 014122 306 GGELYTWGSNENGCLGIG-S-IDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS 364 (430)
Q Consensus 306 ~g~v~~wG~n~~gqLG~~-~-~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~ 364 (430)
|..+..||...+|.+.-+ + ...+..|.++.. +....+.+ +++|+.|+++|.
T Consensus 345 d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~-l~~i~v~~-------VamGysHs~viv 397 (443)
T KOG1427|consen 345 DSSCISWGHAQYGELLGGPNGQKSSAAPKKVDM-LEGIHVMG-------VAMGYSHSMVIV 397 (443)
T ss_pred cccccccccccccccccCccccccccCccccch-hcceeccc-------eeeccceEEEEE
Confidence 788999999888765544 3 345677887774 45555555 999999999987
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=2.4e-29 Score=245.29 Aligned_cols=298 Identities=27% Similarity=0.364 Sum_probs=227.4
Q ss_pred CCcEEEEEEcCCCCccCCCCCCCcccceeeCcc--CCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccc
Q 014122 36 QRRFAALWGNGDYGRLGLGSLESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSL 113 (430)
Q Consensus 36 ~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~--~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~ 113 (430)
....||+||.|.+..||.+.......|..+..| ++.-+.+|+.+..|++||++.|+||++|.+..|+||.+ .....+
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~g-deq~~~ 218 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFG-DEQYNF 218 (1267)
T ss_pred CccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcC-cccccc
Confidence 457999999999999999999999999999988 45568899999999999999999999999999999999 677778
Q ss_pred cceEeccCCC-cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEecc--CC-ceEEEEecCCcee
Q 014122 114 EPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--SG-IFTKQAALGFEQS 189 (430)
Q Consensus 114 ~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~--~~-~~i~~i~~g~~~~ 189 (430)
.|.++++|.. ++.+|++...|+++||++|.||+||.|..+|||..+.... ...|.+|... .+ ..|+.|+||..|+
T Consensus 219 iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~-~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 219 IPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELK-KDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred cccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhh-cCchhhhhhHhhcchhhhhhhhccccee
Confidence 9999998665 9999999999999999999999999999999999776542 3444444321 22 2699999999999
Q ss_pred EEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCc
Q 014122 190 VAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269 (430)
Q Consensus 190 ~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gq 269 (430)
++.++. .||+||.| .||||..+.. .....|+.+.... .+|+.+.|....+++++.++.+|++-+-..-.
T Consensus 298 Vawt~~-~VY~wGlN-~GQlGi~~n~--------~~Vt~Pr~l~~~~-~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLN-NGQLGISDNI--------SVVTTPRRLAGLL-SPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred eeeecc-eEEEeccc-CceecCCCCC--------ceeecchhhcccc-cceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 999965 99999998 6999987762 4456676554433 47999999999999999999999997654333
Q ss_pred cccCCCCCCCCCeeecC--C----CCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCc
Q 014122 270 MLFQEGNHARRPSLISK--L----PYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPV 343 (430)
Q Consensus 270 lg~~~~~~~~~p~~i~~--~----~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i 343 (430)
+-... ....-..+.. + .++.+..+...-.+++|+-|+||+|-+++.. ........+.. .
T Consensus 367 ~~~n~--~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-------~~~c~ftp~r~----~-- 431 (1267)
T KOG0783|consen 367 LPFNV--DFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-------RTSCKFTPLRI----F-- 431 (1267)
T ss_pred cCcch--hccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-------eeeeeccccee----e--
Confidence 22111 1111111111 1 2466777777888999999999999976521 11111111111 1
Q ss_pred ccccceEEEEeecCceeEEEE-CC
Q 014122 344 DQICTSIVLVSCGWKHTAAIS-EG 366 (430)
Q Consensus 344 ~~~~~~v~~i~~G~~h~~~l~-~g 366 (430)
.|.+|+--.+..++++ ||
T Consensus 432 -----~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 432 -----EISDIAWTANSLILCTRDG 450 (1267)
T ss_pred -----ehhhhhhccceEEEEecCc
Confidence 1333777778888888 99
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-25 Score=225.97 Aligned_cols=374 Identities=20% Similarity=0.259 Sum_probs=251.5
Q ss_pred hhhhcccceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEEC
Q 014122 9 MTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE 88 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~ 88 (430)
+.+|++...-+..+.++..+-|.....++|+||+-|.+. ++|.-.....+....++ .+|++|+.|-+...|+.-
T Consensus 469 L~e~L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 469 LPEFLPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSG 542 (3738)
T ss_pred chhhhccccCchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheeec
Confidence 345566666777888999888888889999999999876 66765555555544444 469999999998888776
Q ss_pred CCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccc
Q 014122 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (430)
Q Consensus 89 ~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p 168 (430)
-|+=|.+-..+.. ......+.++.-+++|++|.+...---+++++|++|..|....- .....
T Consensus 543 A~~G~I~~v~D~k--------~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~----------~n~SS 604 (3738)
T KOG1428|consen 543 AGHGWIASVDDKK--------RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR----------VNVSS 604 (3738)
T ss_pred cCcceEEeccCcc--------cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE----------ecchH
Confidence 6554444322211 11122233333445888887665555688999999999865321 01122
Q ss_pred eEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccccc----Cccee-ecccCccEEEE
Q 014122 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY----TPRLI-KELEGVKVKIA 243 (430)
Q Consensus 169 ~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~----~p~~i-~~~~~~~i~~i 243 (430)
..+..+.+.-|.+++.|..|.++++.+|+||.||.|+.+|+|+-.+............. .|.-. +-+.+..-+..
T Consensus 605 qmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa 684 (3738)
T KOG1428|consen 605 QMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCA 684 (3738)
T ss_pred HHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhh
Confidence 34567788889999999999999999999999999999999996554332222111111 11111 11222233444
Q ss_pred EeCCCeEEEE------ecCCcEEEEecCCCCcc--cc------CCC-------------------CCCCCCeeecCCC--
Q 014122 244 AAGFLHSACI------DENGRVYIFGDRAVDKM--LF------QEG-------------------NHARRPSLISKLP-- 288 (430)
Q Consensus 244 ~~g~~~~~~l------t~~g~vy~wG~~~~gql--g~------~~~-------------------~~~~~p~~i~~~~-- 288 (430)
.||......+ ...|.+-.+|.+..+.+ |. ... ....-|.++...+
T Consensus 685 ~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~ 764 (3738)
T KOG1428|consen 685 QCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGP 764 (3738)
T ss_pred hcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCC
Confidence 4444332221 23455666665543322 11 000 0112233332211
Q ss_pred ---CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-
Q 014122 289 ---YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS- 364 (430)
Q Consensus 289 ---~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~- 364 (430)
++.+|+||..|+++|.+|++||++|+|.+||||.|++.....|+.|..+ .+..+.+ +++|.+|++++.
T Consensus 765 Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~-~~t~~vQ-------VaAGSNHT~l~~~ 836 (3738)
T KOG1428|consen 765 HDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILP-SDTVIVQ-------VAAGSNHTILRAN 836 (3738)
T ss_pred cceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcC-CCCceEE-------EecCCCceEEEec
Confidence 4889999999999999999999999999999999999999999999863 4555555 999999999999
Q ss_pred CCceEEEecCCCCCccccCCCCCCCccCCcCCC---CccccEEEEecC---CeeEEEEeccCCceEEE
Q 014122 365 EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDV---DYIHPTIVNFGE---NVKALQVSCGFNHTGAL 426 (430)
Q Consensus 365 ~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~---~~~~p~~v~~~~---~~~v~~i~~G~~~t~~l 426 (430)
||+||.+|.- ..|||+..--+ -...|.+++.+. +....+|.+.++.+++-
T Consensus 837 DGsVFTFGaF------------~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 837 DGSVFTFGAF------------GKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred CCcEEEeccc------------cCccccCccccccccccCCCcCCCCCccccccceeeccCCCcceee
Confidence 9999999985 78999986432 234677777542 45677888888887764
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=4.9e-25 Score=215.38 Aligned_cols=271 Identities=24% Similarity=0.320 Sum_probs=206.6
Q ss_pred EEECCCCEEEEecCCCCccccCCCCCccccceEeccCCC---cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCC
Q 014122 85 FLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161 (430)
Q Consensus 85 ~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~---~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~ 161 (430)
+++.-.+||.||.|...-||+++ ......|..+..+.. -+.+|..+..|+++|++.|+||+||.+.-|.||.+...
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign-~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGN-GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred ccCCccceeEecccccccccccC-CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 56777899999999999999984 444467777764433 67789999999999999999999999999999999655
Q ss_pred CcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeeccc--C-c
Q 014122 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE--G-V 238 (430)
Q Consensus 162 ~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~--~-~ 238 (430)
. .+.|++++.+.+.++.+|++...|+++||++|-||.||.|..+|||..+.. .....|..|.... + .
T Consensus 216 ~--~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~--------~~~~~p~qI~a~r~kg~~ 285 (1267)
T KOG0783|consen 216 Y--NFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE--------LKKDDPIQITARRIKGFK 285 (1267)
T ss_pred c--cccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch--------hhcCchhhhhhHhhcchh
Confidence 4 789999999999999999999999999999999999999999999998763 3344455554322 1 2
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCC-CCCCCCeeecCCC-CeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG-NHARRPSLISKLP-YSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 239 ~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~-~~~~~p~~i~~~~-~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
+|+.+++|..|+++.+.. .||.||.|. ||+|..+. ..+..|..+.... .++.|.|....++++++++.+|++-+-.
T Consensus 286 ~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~ 363 (1267)
T KOG0783|consen 286 QIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADYN 363 (1267)
T ss_pred hhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEEeccc
Confidence 699999999999999865 799999987 99997665 3456776554443 6999999999999999999999987655
Q ss_pred CCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecC
Q 014122 317 NGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWG 374 (430)
Q Consensus 317 ~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~ 374 (430)
...+-... .....-.....++... ..++.+..+.....++++ -|+||+|-..
T Consensus 364 ~~k~~~n~-~~lks~~V~gg~l~~~-----~~~~~k~~a~~~kll~lte~g~Vy~w~s~ 416 (1267)
T KOG0783|consen 364 QVKLPFNV-DFLKSLKVTGGPLSLT-----RFNVRKLLASENKLLVLTELGEVYEWDSK 416 (1267)
T ss_pred ceecCcch-hccceeEEecCccchh-----hhhhhhcchhhhheeeeccCCeEEEEecC
Confidence 33332110 0000001111111111 124445777778889999 9999999873
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-19 Score=182.18 Aligned_cols=299 Identities=20% Similarity=0.284 Sum_probs=191.7
Q ss_pred eeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEec
Q 014122 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (430)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~ 97 (430)
.+++++-|....++.....+|-++.-|+.+. .| ...++..-...+|+.+.+...-.-.+.+||++|+.|.
T Consensus 526 ~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~--~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~ 595 (3738)
T KOG1428|consen 526 PIVQISVGIDTIMFRSGAGHGWIASVDDKKR--NG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGL 595 (3738)
T ss_pred ceEEEEeccchhheeeccCcceEEeccCccc--cc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecc
Confidence 3455666667777777667776666664441 11 1122222233568888766666678999999999986
Q ss_pred CCCCccccCCCCCccccceEeccCCC-cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEE-----
Q 014122 98 NDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV----- 171 (430)
Q Consensus 98 n~~g~lg~~~~~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i----- 171 (430)
... ........+.+|+. -|.+++.|..|.++++.+|+||.||.|..+|+|.-..... ...|..-
T Consensus 596 ~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sT-t~s~~~s~~~e~ 665 (3738)
T KOG1428|consen 596 HTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTST-TSSPRHSGRQEY 665 (3738)
T ss_pred eeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccc-cCCcccccceee
Confidence 321 11123334455655 7888999999999999999999999999999997433221 1111110
Q ss_pred --------eccCCceEEEEecCCceeEEE------EcCCcEEEeecCCCCCCCCCCC-----------Ccccc-------
Q 014122 172 --------ECLSGIFTKQAALGFEQSVAV------TGGGKVLSWGAGGSGRLGHGQE-----------SSILG------- 219 (430)
Q Consensus 172 --------~~~~~~~i~~i~~g~~~~~~l------t~~g~v~~wG~n~~gqlg~~~~-----------~~~~~------- 219 (430)
.-+.+...+...||.-...-+ .-.|.+-.+|.+..+.+-.+.. ..+..
T Consensus 666 ~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~st 745 (3738)
T KOG1428|consen 666 QICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSST 745 (3738)
T ss_pred cccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheeccc
Confidence 001122233333333221111 1145555555554433221110 00000
Q ss_pred ccccccccCcceee---cccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC--CeeeEE
Q 014122 220 FLRSTSEYTPRLIK---ELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVV 294 (430)
Q Consensus 220 ~~~~~~~~~p~~i~---~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~--~i~~v~ 294 (430)
..++....-|..+. .+.+.++.+|+||.+|+++|.+|++||.||.|.+||||.++......|+++..++ .+.+|+
T Consensus 746 aa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVa 825 (3738)
T KOG1428|consen 746 AAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVA 825 (3738)
T ss_pred ccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEe
Confidence 11122223343333 2335589999999999999999999999999999999999998888898887766 489999
Q ss_pred eeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCC---CcCCCeeccC
Q 014122 295 CGGYHTCVLTSGGELYTWGSNENGCLGIGSID---VLHSPERVQG 336 (430)
Q Consensus 295 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~---~~~~p~~v~~ 336 (430)
+|.+|++++..||+||++|.-..|||+..-.+ ....|.++.+
T Consensus 826 AGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 826 AGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred cCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCC
Confidence 99999999999999999999999999975322 2334555554
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.34 E-value=1.5e-12 Score=87.87 Aligned_cols=50 Identities=42% Similarity=0.751 Sum_probs=47.0
Q ss_pred CCceEEEecCCCCCccccCCCCCCCccC-CcCCCCccccEEEEecCCeeEEEEeccCCceEEE
Q 014122 365 EGKILTWGWGGSHGTFSEDGHSSGGQLG-HGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 426 (430)
Q Consensus 365 ~g~v~~wG~~~~~~~~~~~~~N~~gqlG-~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~l 426 (430)
||+||+||. |++|||| .++......|++++.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~------------n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGS------------NDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEE------------ETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEEC------------CCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999 7999999 7778889999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=1.1e-11 Score=83.54 Aligned_cols=50 Identities=32% Similarity=0.531 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCCccC-CCCCCCcccceeeCccCCCceEEEEeCCcceEEE
Q 014122 37 RRFAALWGNGDYGRLG-LGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL 86 (430)
Q Consensus 37 ~~~v~~wG~n~~G~LG-~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~l 86 (430)
||+||+||.|.+|||| .........|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7778889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.05 E-value=3.4e-10 Score=66.36 Aligned_cols=30 Identities=57% Similarity=1.237 Sum_probs=25.9
Q ss_pred eeeEEeeCCeEEEEEcCCCEEEEeCCCCCC
Q 014122 290 SEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (430)
Q Consensus 290 i~~v~~G~~~~~~l~~~g~v~~wG~n~~gq 319 (430)
|++|++|.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.04 E-value=3.1e-10 Score=66.54 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=25.9
Q ss_pred EEEEecCCceeEEEEcCCcEEEeecCCCCC
Q 014122 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208 (430)
Q Consensus 179 i~~i~~g~~~~~~lt~~g~v~~wG~n~~gq 208 (430)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.7e-11 Score=121.10 Aligned_cols=147 Identities=28% Similarity=0.457 Sum_probs=123.2
Q ss_pred ceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC
Q 014122 168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF 247 (430)
Q Consensus 168 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 247 (430)
|..+..+.-.++.+++||..|+++++..|++++||.|.++|+|++.. .....|..++.+.+.+...|++|.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~---------~~~~~p~~~~sl~g~p~a~v~~g~ 75 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY---------FPDAKPEPVESLKGVPLAQVSAGE 75 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc---------CCCCCCccchhhcCCcHHHHhcCC
Confidence 33444445557999999999999999999999999999999999843 333348999999999999999999
Q ss_pred CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCC
Q 014122 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDV 327 (430)
Q Consensus 248 ~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~ 327 (430)
.|++++.. |+++++.+|.++.+|....+|+|+.....
T Consensus 76 ~hs~~lS~-------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~ 112 (850)
T KOG0941|consen 76 AHSFALSS-------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTEN 112 (850)
T ss_pred Ccchhhhh-------------------------------------------chhhcchhccccccCCccccccccccccc
Confidence 99999865 89999999999999999999999976666
Q ss_pred cCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE--CCceEEEecC
Q 014122 328 LHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS--EGKILTWGWG 374 (430)
Q Consensus 328 ~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~--~g~v~~wG~~ 374 (430)
...|..+.. +-...+.+ |+||-.|+++.. -|++|..|.+
T Consensus 113 ~~~~~~v~e-~i~~~~t~-------ia~~~~ht~a~v~~l~qsf~~~~~ 153 (850)
T KOG0941|consen 113 EVLPLLVLE-LIGSRVTR-------IACVRGHTLAIVPRLGQSFSFGKG 153 (850)
T ss_pred ccccHHHHH-HHhhhhHH-------HHHHHHHHHhhhhhhcceeecccC
Confidence 677776664 34444555 999999999887 8999999995
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.4e-11 Score=117.95 Aligned_cols=144 Identities=28% Similarity=0.438 Sum_probs=116.2
Q ss_pred cceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCC-cEEEEEcCCCeEEEEE
Q 014122 61 RPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAIT 139 (430)
Q Consensus 61 ~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt 139 (430)
.|..+..+.-..|.+++||.+|+.+++..|++++||.|.+||+|.+....... |.+++.+.. +..+|++|..|+++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhh
Confidence 44555555556799999999999999999999999999999999984333333 887776655 7788999998887766
Q ss_pred c-------CCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEE-EcCCcEEEeecCCCC
Q 014122 140 V-------DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV-TGGGKVLSWGAGGSG 207 (430)
Q Consensus 140 ~-------~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l-t~~g~v~~wG~n~~g 207 (430)
. +|.++.+|....||+|...... ...|..+...-+..+..|+|+..|+.+. ..-|++|.+|.+..|
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~--~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGHSLTEN--EVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred hchhhcchhccccccCCccccccccccccc--ccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 5 9999999999999999955554 4556566566677899999999998876 457899999988776
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.03 E-value=0.53 Score=52.53 Aligned_cols=287 Identities=14% Similarity=0.125 Sum_probs=138.1
Q ss_pred ceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEe---c-----------cCC---C----cEEEEEc
Q 014122 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI---S-----------GLK---K----EVVQIST 130 (430)
Q Consensus 72 ~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i---~-----------~l~---~----~i~~i~~ 130 (430)
+.++|....++-++.+.+|+||.--..... .++......|... . ++- . -.++=..
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~----~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~ 565 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ----DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQ 565 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc----CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccC
Confidence 567788888899999999999985332211 1111222222222 1 010 0 2222234
Q ss_pred CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCc-ccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCC
Q 014122 131 GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK-VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRL 209 (430)
Q Consensus 131 G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~-~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gql 209 (430)
|..|++.|.+++.=|.-|+|-.-.|=..+..-- ..+.|..- .-+-.|..-.++|. +|+|..|-....+-
T Consensus 566 GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~--------~~ldl~r~G~v~L~-~G~i~~wD~ttq~W- 635 (1774)
T PF11725_consen 566 GQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPH--------EILDLGRAGLVGLQ-DGKIQYWDSTTQCW- 635 (1774)
T ss_pred CceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChH--------Hhhccccccceeec-cceEeeecCcchhh-
Confidence 667777777777777666664333222111100 00011111 11233556678888 59999995432111
Q ss_pred CCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCC-CCccccCCCCC---------CC
Q 014122 210 GHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRA-VDKMLFQEGNH---------AR 279 (430)
Q Consensus 210 g~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~-~gqlg~~~~~~---------~~ 279 (430)
.-..+ +.|..+.-|.+....+..+|+|-..--+. +..+-.+.... ..
T Consensus 636 ------------------~~~~~-----kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e 692 (1774)
T PF11725_consen 636 ------------------KDAGV-----KDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVE 692 (1774)
T ss_pred ------------------hhccC-----cCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCC
Confidence 10001 11233333444344444444443322111 01111111111 11
Q ss_pred CCeeecCCC--CeeeEE-eeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeec
Q 014122 280 RPSLISKLP--YSEEVV-CGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCG 356 (430)
Q Consensus 280 ~p~~i~~~~--~i~~v~-~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G 356 (430)
.-..+..++ .|+.++ .+.++.++|+++|+|-..=. -..|..+..+-. ...|++|+.-
T Consensus 693 ~G~~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k-------------~g~p~~l~~~gl-------~G~ik~l~lD 752 (1774)
T PF11725_consen 693 LGDALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK-------------PGRPVPLSRPGL-------SGEIKDLALD 752 (1774)
T ss_pred CCccccCCCcCcceeEEEEcCCceEEeccCCccccccC-------------CCCCccCCCCCC-------Ccchhheeec
Confidence 111222333 355544 47789999999998876321 011444433211 2356669999
Q ss_pred Ccee-EEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEEecCCeeEEEEeccCCceEEEEe
Q 014122 357 WKHT-AAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE 428 (430)
Q Consensus 357 ~~h~-~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~l~~ 428 (430)
..|. +|++ +|++|.-=. ..=|=+...........+|.++.+.++..+....+|...+.-
T Consensus 753 ~~~nL~Alt~~G~Lf~~~k-------------~~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 753 EKQNLYALTSTGELFRLPK-------------EAWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred cccceeEecCCCceeecCH-------------HHhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence 8865 6888 999997321 011111111111234555565677788888888888777653
No 16
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.89 E-value=6 Score=38.43 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCCcEEEEEcCCC--eEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc--eeEEEEcCC
Q 014122 121 LKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGG 196 (430)
Q Consensus 121 l~~~i~~i~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g 196 (430)
+|.++..+++... +.++=+..|++|.|--++ |.| ...- -.+.++ |.++....+ |.+--.+||
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~L---------L~v~--~aHYQ~--ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GIL---------LNVL--SAHYQS--ITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc-ccH---------HHHH--Hhhccc--eeEEEEeCCCcEEEecCCCc
Confidence 5567777776443 344445899999997653 221 1110 112233 444444444 444445699
Q ss_pred cEEEeecCCCCCCCCCCCCccccccccccccCcceeecc--cCccEEEEEeCCCeE--EE--EecCCcEEEEecCCCCcc
Q 014122 197 KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFLHS--AC--IDENGRVYIFGDRAVDKM 270 (430)
Q Consensus 197 ~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~--~~--lt~~g~vy~wG~~~~gql 270 (430)
.|.+|=.-.- .. ..+...|..+..+ -...|.++.+|..-+ .+ ...|..+-+|--.. |
T Consensus 146 ~V~vW~l~~l------v~--------a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g-- 208 (476)
T KOG0646|consen 146 AVLVWLLTDL------VS--------ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-G-- 208 (476)
T ss_pred cEEEEEEEee------cc--------cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-c--
Confidence 9999943211 00 1122233333333 234688888876531 11 12333344442211 0
Q ss_pred ccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEE
Q 014122 271 LFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (430)
Q Consensus 271 g~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~w 312 (430)
........+...+-..+..+..+.++=+++|.+|..
T Consensus 209 ------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 209 ------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred ------eeeEEEecCCcceeEEEcccccEEEecCCcceEEee
Confidence 000001111111233444566777777888888763
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.86 E-value=0.85 Score=51.04 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=69.0
Q ss_pred eeecccCccEEEEEe-CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeec--CCC-CeeeEEeeCCeE-EEEEc
Q 014122 231 LIKELEGVKVKIAAA-GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS--KLP-YSEEVVCGGYHT-CVLTS 305 (430)
Q Consensus 231 ~i~~~~~~~i~~i~~-g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~--~~~-~i~~v~~G~~~~-~~l~~ 305 (430)
.+..+++..|..++. +.+..++|+..|++-..=. . ..|..+. .+. .|+.++.=..|. ++++.
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k-----------~--g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK-----------P--GRPVPLSRPGLSGEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCccccccC-----------C--CCCccCCCCCCCcchhheeeccccceeEecC
Confidence 345555555665543 6788899999998876420 0 1134333 333 688998876654 57999
Q ss_pred CCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CC
Q 014122 306 GGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EG 366 (430)
Q Consensus 306 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g 366 (430)
+|+||..=.-.....-. .......+.+|..| .+.++.. +....+|.+.+. ++
T Consensus 763 ~G~Lf~~~k~~WQ~~~~-~~~~~~~W~~v~lP-~~~~v~~-------l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 763 TGELFRLPKEAWQGNAE-GDQMAAKWQKVALP-DEQPVKS-------LRTNDDNHLSAQIED 815 (1774)
T ss_pred CCceeecCHHHhhCccc-CCccccCceeccCC-CCCchhh-------hhcCCCCceEEEecC
Confidence 99999843221111101 11122455666665 5555655 999999998888 44
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.58 E-value=6 Score=39.63 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=66.5
Q ss_pred cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCC-ceEEEEecCC-ceeEEEEcCCcEEE-eecCCC
Q 014122 130 TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG-IFTKQAALGF-EQSVAVTGGGKVLS-WGAGGS 206 (430)
Q Consensus 130 ~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~-~~i~~i~~g~-~~~~~lt~~g~v~~-wG~n~~ 206 (430)
.|.....+|..+|++|.= .| +... .|.-...+.+.. ..+.+|++|. ....+++++|.||. -|-...
T Consensus 190 ~g~~~awAI~s~Gd~y~R----tG---vs~~----~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR----TG---VSVD----RPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe----cc---ccCC----CCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence 456666788888888851 11 1111 111112222221 2488999999 67888999999874 355555
Q ss_pred CCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEE
Q 014122 207 GRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (430)
Q Consensus 207 gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 262 (430)
++.|..- ....+|+... .++.|+.|....-|||++|.+|.=
T Consensus 259 Np~GdsW----------kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSW----------KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchh----------hhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 5554332 1233333332 289999999999999999999853
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.28 E-value=8 Score=34.49 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=51.9
Q ss_pred cceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCC
Q 014122 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFG 101 (430)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g 101 (430)
......++.+...++.+++|-..... ....+. .....+..+..-.. ..++...+|.|+.|-....
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~- 83 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG- 83 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-
Confidence 33334555555678899999654321 111111 11123444444433 4555566899999965431
Q ss_pred ccccCCCCCccccceEeccCCCcEEEEEcCCC-eEEEEEc-CCcEEEEecC
Q 014122 102 QLGISENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITV-DGELYMWGKN 150 (430)
Q Consensus 102 ~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~-~~~~lt~-~G~vy~~G~n 150 (430)
.....+......+..+..... ..++... +|.|+.|-..
T Consensus 84 -----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 84 -----------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred -----------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 112222222235555554432 3444444 8899998654
No 20
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.92 E-value=2.3 Score=42.46 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=71.3
Q ss_pred cCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC-CeEEEEecCCcEE-E
Q 014122 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-LHSACIDENGRVY-I 261 (430)
Q Consensus 184 ~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-~~~~~lt~~g~vy-~ 261 (430)
.|.....+|.++|++|.= -|....... -..-+.+.... ++..|++|. ....+++.+|+|+ -
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~--------GraW~~i~~~t--~L~qISagPtg~VwAvt~nG~vf~R 252 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPC--------GRAWKVICPYT--DLSQISAGPTGVVWAVTENGAVFYR 252 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCC--------CceeeecCCCC--ccceEeecCcceEEEEeeCCcEEEE
Confidence 566678889999999962 222221000 00001111111 588999998 7788999999975 5
Q ss_pred EecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEE
Q 014122 262 FGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYT 311 (430)
Q Consensus 262 wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~ 311 (430)
-|-....+.|..-. .+..|..... ++.|+.|..-.-+|+.+|.+|.
T Consensus 253 ~GVsRqNp~GdsWk-dI~tP~~a~~---~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 253 EGVSRQNPEGDSWK-DIVTPRQALE---PVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ecccccCCCCchhh-hccCcccccc---eEEEEeccceEEEEecCCcEEE
Confidence 67777777776544 4455554432 8899999999999999999996
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.014 Score=61.77 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=87.0
Q ss_pred cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEE-eccCCceEEEEecCCceeEEEEcCCcEEEee
Q 014122 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV-ECLSGIFTKQAALGFEQSVAVTGGGKVLSWG 202 (430)
Q Consensus 124 ~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i-~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG 202 (430)
+++.|.+-.+..++|..+|++|.|-....--+-..-........|..- -.+.+.+|+.+++..-..-++|++|+|.+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 888999999999999999999999876543332221222223334332 2456779999999999999999999999993
Q ss_pred cCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCC
Q 014122 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAV 267 (430)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~ 267 (430)
. .+|.+..... .......+ ...+..+++..|...|.++...|+.+|-||--..
T Consensus 455 D----EcgagV~fkL-------a~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 455 D----ECGAGVAFKL-------AHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred h----hhhhhhhhhh-------hhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 3 2222221100 00011111 2233456777788889999999999999995443
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=91.36 E-value=10 Score=33.99 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=57.5
Q ss_pred CceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEec
Q 014122 176 GIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDE 255 (430)
Q Consensus 176 ~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~ 255 (430)
++..+.+.|-....+-=.+||.+-+|-.-. ...++.+......+-+-+.-...+-+.-+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~--------------------~~~qR~~~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--------------------LSCQRNYQHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccC--------------------cccchhccCCCCcceEEecCCcceEEeecC
Confidence 334444455554555556778888885421 112222222221122333334444555678
Q ss_pred CCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeC--CeEEEEEcCCCEEEEeCC
Q 014122 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG--YHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 256 ~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~--~~~~~l~~~g~v~~wG~n 315 (430)
+|.|+.|..... .-.....|... ..|.++.... ...++.++.|++|+|-.-
T Consensus 145 sg~irvWDl~~~------~c~~~liPe~~---~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 145 SGNIRVWDLGEN------SCTHELIPEDD---TSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CCcEEEEEccCC------ccccccCCCCC---cceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 999999964331 11122222222 2455655544 345668889999999853
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=0.034 Score=59.01 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=85.2
Q ss_pred CceEEEEeCCcceEEEECCCCEEEEecCCCCccccC---CCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEE
Q 014122 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS---ENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (430)
Q Consensus 71 ~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~---~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~ 147 (430)
.+++.|.+-.+..++|.++|++|.|-+...--+-.+ ......+.-..+-.-.++|+.+++..-..-++|++|+|-+|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 467788888888999999999999988765433211 01111122222332345999999999999999999999998
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCC
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG 205 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~ 205 (430)
=.. +|.+-...-......++ ...+..+++..|...|+++..++.-+|.||---
T Consensus 454 lDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 454 LDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred Hhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 432 22211111001111112 235567888889999999999999999999643
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.89 E-value=14 Score=32.91 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=51.2
Q ss_pred ceEEEEeCCc-ceEEEEC-CCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCC-CeEEEEEc-CCcEEEE
Q 014122 72 SLKALACGGA-HTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITV-DGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~-~~~~lt~-~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~-~~~~~lt~-~G~vy~~ 147 (430)
.|..+..... ..++... +|.|+.|-...... ...+......+..+.... ...++... +|.|+.|
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 4666665543 3444444 88899986542111 111111223455555443 33333443 8899988
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc--eeEEEEcCCcEEEeec
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~ 203 (430)
-...... ...+. .....|..++...+ ..++...+|.|..|-.
T Consensus 163 d~~~~~~-------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 163 DLRTGKC-------------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred Ecccccc-------------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 6542100 00111 11123444444333 4555555888888854
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.44 E-value=16 Score=32.93 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=71.1
Q ss_pred EECCCCEEEEecCCCCccccCCCCCccccceE-eccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCC
Q 014122 86 LTETGCVYATGLNDFGQLGISENIGYSLEPLR-ISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA 162 (430)
Q Consensus 86 lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~-i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~ 162 (430)
||.|++..+-+.|.+-+|..-.... +.|.. ++.-.++|..|. +-..-.+-=.+||.+-.|---.
T Consensus 48 iTpdk~~LAaa~~qhvRlyD~~S~n--p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~----------- 114 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQHVRLYDLNSNN--PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS----------- 114 (311)
T ss_pred EcCCcchhhhccCCeeEEEEccCCC--CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-----------
Confidence 4555555555555544443221111 12322 222223455443 3444444556778888886432
Q ss_pred cccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEE
Q 014122 163 KVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI 242 (430)
Q Consensus 163 ~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~ 242 (430)
..-++.......+.-+-+.-...+.+.=+.+|.|++|-....- . .....|... ..|.+
T Consensus 115 --~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~------c---------~~~liPe~~-----~~i~s 172 (311)
T KOG0315|consen 115 --LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS------C---------THELIPEDD-----TSIQS 172 (311)
T ss_pred --cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc------c---------ccccCCCCC-----cceee
Confidence 1111112222222233344555667777889999999653210 0 112222222 24555
Q ss_pred EEeC--CCeEEEEecCCcEEEEec
Q 014122 243 AAAG--FLHSACIDENGRVYIFGD 264 (430)
Q Consensus 243 i~~g--~~~~~~lt~~g~vy~wG~ 264 (430)
++.. .....+.++.|+.|+|-.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEc
Confidence 5554 445567889999999964
No 26
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.30 E-value=9.5 Score=37.12 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=86.0
Q ss_pred ccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCC--ceEEEEeCCcceEEEECCCCEEEEecCCC
Q 014122 23 KLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKH--SLKALACGGAHTLFLTETGCVYATGLNDF 100 (430)
Q Consensus 23 ~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~--~I~~i~~G~~~~~~lt~~G~vy~wG~n~~ 100 (430)
.+.....++.+.++||.|++|=-.+.- +..+...|.++..+.+. .|.++.+|..- .+.+||+-+....
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t 199 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRT 199 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCce
Confidence 344567778888899999999754411 11222366777766553 79998888664 3445555443332
Q ss_pred CccccCCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCC-CCCC-CCCCCC--cccccceEEecc
Q 014122 101 GQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSN-GQLG-LGKKAA--KVIPIPTKVECL 174 (430)
Q Consensus 101 g~lg~~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~-gqlg-~~~~~~--~~~~~p~~i~~~ 174 (430)
-++-.-... .-...+. +|..|..|+ -+..++++=+++|.+|..-.... ||-- +..... .....+..+-..
T Consensus 200 ~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 200 IKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred EEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 221110000 1111111 344444443 46777888889999887532211 1110 000000 001111112222
Q ss_pred CCceEEEEecCCceeEEE--EcCCcEEEeecC
Q 014122 175 SGIFTKQAALGFEQSVAV--TGGGKVLSWGAG 204 (430)
Q Consensus 175 ~~~~i~~i~~g~~~~~~l--t~~g~v~~wG~n 204 (430)
....|..++-..+-++.+ ++||+|-+|-..
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 234677777666666666 467888888543
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.85 E-value=38 Score=35.41 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=61.0
Q ss_pred ccCCcEEEEEEcCCCCccCCCCCCC-cccceeeCccCCCceEEEEeCCcceEE--EECCCCEEEEecCCCCccccCCCCC
Q 014122 34 TLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLF--LTETGCVYATGLNDFGQLGISENIG 110 (430)
Q Consensus 34 ~~~~~~v~~wG~n~~G~LG~~~~~~-~~~p~~v~~~~~~~I~~i~~G~~~~~~--lt~~G~vy~wG~n~~g~lg~~~~~~ 110 (430)
....|...+.|..+.|||..-.-.. .+.-.+=..+ .+|..++-..+-.++ =.+||+|-+|-..+.-+
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC-------- 384 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC-------- 384 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEEeccCceE--------
Confidence 3467999999999999988643111 1111110011 146666666664433 34688888885443211
Q ss_pred ccccceEeccCCC--cEEEEEcCCCeEEEEEcCCcEEEEecCCC
Q 014122 111 YSLEPLRISGLKK--EVVQISTGYHHSSAITVDGELYMWGKNSN 152 (430)
Q Consensus 111 ~~~~p~~i~~l~~--~i~~i~~G~~~~~~lt~~G~vy~~G~n~~ 152 (430)
...+..-.. ..++++.-.+..+..+=||.|-+|.-+.+
T Consensus 385 ----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 385 ----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 111111111 55666777777788888999999987654
No 28
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.31 E-value=41 Score=33.23 Aligned_cols=196 Identities=13% Similarity=0.160 Sum_probs=95.3
Q ss_pred CcEEEEEc-CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEE--eccCCceEEEEecCCceeEEEEcCCcEE
Q 014122 123 KEVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV--ECLSGIFTKQAALGFEQSVAVTGGGKVL 199 (430)
Q Consensus 123 ~~i~~i~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i--~~~~~~~i~~i~~g~~~~~~lt~~g~v~ 199 (430)
.+|+.+.= -....++|+++|.++... -+|.. . ...+..+ ....+.++-.+..+.+-.++||.++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~--fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------Q--FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------e--echhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 46777654 456789999999988763 33433 0 1112222 1122223444455656688899999999
Q ss_pred EeecCCCCCCCCCCCCccccccccccccCcceee---cccC-ccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCC
Q 014122 200 SWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK---ELEG-VKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG 275 (430)
Q Consensus 200 ~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~---~~~~-~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~ 275 (430)
.--.... ..-.. .....|.... .... ..+..+......-+.+..++.++..-.+...+
T Consensus 151 ~v~n~~~-~~~~~-----------~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------ 212 (410)
T PF04841_consen 151 VVNNIDE-PVKLR-----------RLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ 212 (410)
T ss_pred EEeCccc-cchhh-----------ccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------
Confidence 8732211 10000 0001111111 0111 11222222223333344455566443222111
Q ss_pred CCCCCCeeecCCCCeeeEEee--CCeEEEEEcCCCEEEEeCCCCC-CCCCCCCCCcCCCeeccCCCCCCCcccccceEEE
Q 014122 276 NHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENG-CLGIGSIDVLHSPERVQGPFSESPVDQICTSIVL 352 (430)
Q Consensus 276 ~~~~~p~~i~~~~~i~~v~~G--~~~~~~l~~~g~v~~wG~n~~g-qLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~ 352 (430)
+.....+.+++.. ..+.++++.+|++|..= .+.. .+-.-+......|..+
T Consensus 213 --------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~s-sDf~~~~~e~~~~~~~~p~~~------------------ 265 (410)
T PF04841_consen 213 --------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVS-SDFSEKLCEFDTDSKSPPKQM------------------ 265 (410)
T ss_pred --------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEE-CcccceeEEeecCcCCCCcEE------------------
Confidence 3333467777665 45667788889999853 3322 1111111111122211
Q ss_pred EeecCceeEEEE-CCceEEEecC
Q 014122 353 VSCGWKHTAAIS-EGKILTWGWG 374 (430)
Q Consensus 353 i~~G~~h~~~l~-~g~v~~wG~~ 374 (430)
.-||.+ ++++. ...|+..|..
T Consensus 266 ~WCG~d-av~l~~~~~l~lvg~~ 287 (410)
T PF04841_consen 266 AWCGND-AVVLSWEDELLLVGPD 287 (410)
T ss_pred EEECCC-cEEEEeCCEEEEECCC
Confidence 678875 66667 8889988863
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.82 E-value=6.3 Score=35.17 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCeEEEEEcCCcEEEEecCC
Q 014122 121 LKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 121 l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (430)
++.+++.+.|-..+.++||++|.+|+|--..
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 4568889999999999999999999997543
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.18 E-value=6.9 Score=34.89 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=25.0
Q ss_pred ceEEEEecCCceeEEEEcCCcEEEeecCC
Q 014122 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGG 205 (430)
Q Consensus 177 ~~i~~i~~g~~~~~~lt~~g~v~~wG~n~ 205 (430)
.++..+.|...+.+++|++|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 36888999999999999999999996543
No 31
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=83.00 E-value=21 Score=36.98 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.5
Q ss_pred cEEEEEcCCC----eEEEEEcCCcEEEEec
Q 014122 124 EVVQISTGYH----HSSAITVDGELYMWGK 149 (430)
Q Consensus 124 ~i~~i~~G~~----~~~~lt~~G~vy~~G~ 149 (430)
.+.+|+||.. .+++||..|++.-+..
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeech
Confidence 7889999988 8999999999987643
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=62 Score=36.21 Aligned_cols=218 Identities=13% Similarity=0.045 Sum_probs=98.1
Q ss_pred EEEECCCCEEEEecCCCCccccCCCCCc-cccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCC-CCCCCCCC
Q 014122 84 LFLTETGCVYATGLNDFGQLGISENIGY-SLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNG-QLGLGKKA 161 (430)
Q Consensus 84 ~~lt~~G~vy~wG~n~~g~lg~~~~~~~-~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~g-qlg~~~~~ 161 (430)
+=+|.|.+||.|-.++.+.+..-+..+. +..-..+..-|.-++ --=.|.++|..--+|+..|-...- +.+.....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv---~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFV---PEIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcch---hhhheeEEecccceEEEEEEEeccccCcccccc
Confidence 4489999999999888665432211111 111111111111000 012688999999899988853221 11111111
Q ss_pred CcccccceEEeccCCceEEEEecCCceeEEEE-cCCcEEEeecCCCCCCCCCCCCc----cccccccccccCcceeecc-
Q 014122 162 AKVIPIPTKVECLSGIFTKQAALGFEQSVAVT-GGGKVLSWGAGGSGRLGHGQESS----ILGFLRSTSEYTPRLIKEL- 235 (430)
Q Consensus 162 ~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt-~~g~v~~wG~n~~gqlg~~~~~~----~~~~~~~~~~~~p~~i~~~- 235 (430)
+. ..|. ..+..|..|.+..+-=++++ ++|.||-.= .|.+.+.... +.-..-......|..+..+
T Consensus 170 ~~-----~~i~-~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~----Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 170 TS-----FKIS-VDGVSVNCITYTENGRIFFAGRDGNLYELV----YQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred cc-----eeee-cCCceEEEEEeccCCcEEEeecCCCEEEEE----EeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 10 1111 23444555544333333333 344444221 1111111100 0000001223445433322
Q ss_pred -cCccEEEEEeCCCeEEE--EecCCcEEEEecCCCCccccCCC-----------CCCCCCeeecCCCCeeeEE------e
Q 014122 236 -EGVKVKIAAAGFLHSAC--IDENGRVYIFGDRAVDKMLFQEG-----------NHARRPSLISKLPYSEEVV------C 295 (430)
Q Consensus 236 -~~~~i~~i~~g~~~~~~--lt~~g~vy~wG~~~~gqlg~~~~-----------~~~~~p~~i~~~~~i~~v~------~ 295 (430)
...+|.+|+......+. +++.|.|-+|-....|+-+.... .....|..-.....|.+|+ .
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es 319 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASES 319 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccc
Confidence 24479999888766654 67788888886555444332110 0011111111122344443 3
Q ss_pred eCCeEEEEEcCCC-EEEEeC
Q 014122 296 GGYHTCVLTSGGE-LYTWGS 314 (430)
Q Consensus 296 G~~~~~~l~~~g~-v~~wG~ 314 (430)
-+-|.+|+|..|- +|.=|.
T Consensus 320 ~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 320 NDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cceeEEEEecCCeEEEEecc
Confidence 4568899998874 555443
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.34 E-value=75 Score=33.36 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=71.9
Q ss_pred eEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCC--eEEEEEcCCcEEEEe
Q 014122 73 LKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWG 148 (430)
Q Consensus 73 I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~--~~~~lt~~G~vy~~G 148 (430)
|.+++.+.. .++++...|+..++|...-|||..-+-........+--.++ .+..++-..+ ..+.=.+||+|-+|-
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 445555544 35667777999999999889998764333322222111122 5555555444 333444788888886
Q ss_pred cCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCC
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGS 206 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~ 206 (430)
..+ |.| ..+ .-+.-+.+..++++.-.+..+...=||.|-.|-...|
T Consensus 379 ~~S-gfC---------~vT--FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 379 TQS-GFC---------FVT--FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccC-ceE---------EEE--eccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 542 111 111 1122345567777777777777777999999976544
No 34
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=79.85 E-value=66 Score=31.77 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=41.2
Q ss_pred CceEEEEeC-CcceEEEECCCCEEEEecCCCCccccCCCCCccccceEec--c-CCCcEEEEEcCCCeEEEEEcCCcEEE
Q 014122 71 HSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--G-LKKEVVQISTGYHHSSAITVDGELYM 146 (430)
Q Consensus 71 ~~I~~i~~G-~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~--~-l~~~i~~i~~G~~~~~~lt~~G~vy~ 146 (430)
.+|+.+.-- ....++|.+||.++..- -.|.. ....+..+. . .+.++-.+..+..-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 456666643 45778899999988762 22321 011111111 1 11244445666677899999999999
Q ss_pred Eec
Q 014122 147 WGK 149 (430)
Q Consensus 147 ~G~ 149 (430)
.-.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 843
No 35
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=78.96 E-value=1e+02 Score=33.45 Aligned_cols=173 Identities=12% Similarity=0.134 Sum_probs=90.3
Q ss_pred ceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccce--eeCccCCCceEEEEeC-----CcceEEEEC
Q 014122 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACG-----GAHTLFLTE 88 (430)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~--~v~~~~~~~I~~i~~G-----~~~~~~lt~ 88 (430)
+|....+..+..+.-++..+++|.+|..=.. .+.......+-.|. .+...++++|+.+.+- ....+++|+
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~ 610 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATK 610 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeC
Confidence 4455555555556656666688998888322 23322222222222 2344466778877652 234678889
Q ss_pred CCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccc
Q 014122 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIP 166 (430)
Q Consensus 89 ~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~ 166 (430)
+|.+--.-.+.+..... .-..-..+.. .+.++.+. ....+.+++|++|++|.+-...-...+.......
T Consensus 611 ~GyiKRi~l~~~~~~~r-----~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~--- 681 (800)
T TIGR01063 611 NGVVKKTSLTEFSNIRS-----NGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR--- 681 (800)
T ss_pred CCEEEEEEhHHhhhhcc-----CCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee---
Confidence 99776553332211000 0000111111 23444432 3456799999999999987765544443222111
Q ss_pred cceEEeccCCceEEEEecC--CceeEEEEcCCcEEEeec
Q 014122 167 IPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 167 ~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~ 203 (430)
.+..-.+.+|+.+.+- ..+.+++|+.|.+.-.-.
T Consensus 682 ---~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l 717 (800)
T TIGR01063 682 ---GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSI 717 (800)
T ss_pred ---cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEH
Confidence 0222245566666542 335777888887766543
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.90 E-value=54 Score=30.17 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=67.9
Q ss_pred hhhhcccceeeeccccce-eeeEEEeccCCcEEEEEEcC-CCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEE
Q 014122 9 MTKYYLKQDIKLGSKLGI-CKRWISSTLQRRFAALWGNG-DYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL 86 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~wG~n-~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~l 86 (430)
+.+.-++.-....+.++. .+-+.+....||..|++-.+ --++++....+....|.+. +..-+.-.+.++
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---------~~a~~nlet~vf 155 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---------EHADANLETAVF 155 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---------ccCCCcccceee
Confidence 344555555555555554 45666666788888887655 3445554443333344332 223345567899
Q ss_pred ECCCCEEEEecCC-CCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 87 TETGCVYATGLND-FGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 87 t~~G~vy~wG~n~-~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
+.+|+||.-|.+. +|+|--. ..-+++...+ --+.-..++.|-+|+||..-
T Consensus 156 D~~G~lWFt~q~G~yGrLdPa------~~~i~vfpaP------qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 156 DPWGNLWFTGQIGAYGRLDPA------RNVISVFPAP------QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred CCCccEEEeeccccceecCcc------cCceeeeccC------CCCCCcceEECCCCcEEEEe
Confidence 9999999998743 2322111 1111111001 13455678999999999873
No 37
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=74.15 E-value=7.4 Score=23.10 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.1
Q ss_pred CcEEEEEcCC-CeEEEEEcCCcEEEE
Q 014122 123 KEVVQISTGY-HHSSAITVDGELYMW 147 (430)
Q Consensus 123 ~~i~~i~~G~-~~~~~lt~~G~vy~~ 147 (430)
..+++|++|. +...+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5799999999 889999999999963
No 38
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=70.89 E-value=8.5 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred ceEEEEeCC-cceEEEECCCCEEEE
Q 014122 72 SLKALACGG-AHTLFLTETGCVYAT 95 (430)
Q Consensus 72 ~I~~i~~G~-~~~~~lt~~G~vy~w 95 (430)
.+++|++|. ..-.+++.+|+||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 888899999999863
No 39
>PRK05560 DNA gyrase subunit A; Validated
Probab=69.27 E-value=1.8e+02 Score=31.71 Aligned_cols=220 Identities=15% Similarity=0.019 Sum_probs=104.0
Q ss_pred ceEEEE--eCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCC-----CeEEEEEcCCcE
Q 014122 72 SLKALA--CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGEL 144 (430)
Q Consensus 72 ~I~~i~--~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~-----~~~~~lt~~G~v 144 (430)
.+..+. ...+.-+++|+.|++|..-...-...+..........-..+. -.++|+.+.+-. ...+++|++|.+
T Consensus 538 ~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~e~~lvlvTk~Gyi 616 (805)
T PRK05560 538 FVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLE-PGEKITAILPVREFDDDKYLFFATKNGTV 616 (805)
T ss_pred eeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCC-CCceEEEEEeccCCCCCCEEEEEeCCCEE
Confidence 455443 335567889999999998665332222111111111111111 224777776644 457889999987
Q ss_pred EEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEec--CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccc
Q 014122 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (430)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~ 222 (430)
--.-.+.+-....+ -...+..-.+..++.+.. ...+.+++|+.|++|.+-...--..+....
T Consensus 617 KRi~l~~~~~~~r~--------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-------- 680 (805)
T PRK05560 617 KKTSLSEFSNIRSN--------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-------- 680 (805)
T ss_pred EEEEhHHhhhcccC--------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC--------
Confidence 76543322110000 000111113344554443 344688999999999986544333332211
Q ss_pred cccccCcce-eecccCccEEEEEeCC---CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeE--Ee
Q 014122 223 STSEYTPRL-IKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEV--VC 295 (430)
Q Consensus 223 ~~~~~~p~~-i~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v--~~ 295 (430)
... +..-++..|+.+..-. .+.+++|+.|.+...-...+-....+.. ..... ++.. .+.+..+ ..
T Consensus 681 ------Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k-G~~~l-kl~~~~d~lv~v~~v~ 752 (805)
T PRK05560 681 ------GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK-GVITI-KITEKNGKLVGALPVD 752 (805)
T ss_pred ------CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC-cEEee-eccCCCCeEEEEEEec
Confidence 111 1112234555554432 2567788888766553222111110000 00000 1111 1233332 23
Q ss_pred eCCeEEEEEcCCCEEEEeCCC
Q 014122 296 GGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 296 G~~~~~~l~~~g~v~~wG~n~ 316 (430)
+.+..++++.+|++..+-.++
T Consensus 753 ~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 753 DDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred CCCeEEEEecCCeEEEEEHHH
Confidence 445677888888887766443
No 40
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=68.14 E-value=92 Score=30.03 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=29.6
Q ss_pred CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEE
Q 014122 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (430)
Q Consensus 248 ~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~w 312 (430)
...++.+.+|.||++-... |++--. .++....-...-..-..+.++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~~~--------~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFVAR--------LKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEEEE--------EEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4666678889999885432 221100 0000000011112234568888999999986
No 41
>PHA02713 hypothetical protein; Provisional
Probab=67.66 E-value=88 Score=32.31 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=14.0
Q ss_pred CCCeEEEEEcCCcEEEEecC
Q 014122 131 GYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 131 G~~~~~~lt~~G~vy~~G~n 150 (430)
.+.+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444555667899999964
No 42
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=65.35 E-value=2.1e+02 Score=31.12 Aligned_cols=218 Identities=12% Similarity=-0.001 Sum_probs=102.7
Q ss_pred ceEEEE--eCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc-----CCCeEEEEEcCCcE
Q 014122 72 SLKALA--CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVDGEL 144 (430)
Q Consensus 72 ~I~~i~--~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~-----G~~~~~~lt~~G~v 144 (430)
.+..+. ...++.++.|++|++|..-...-...+..........-..+. -+++|+.+.+ -....+++|++|.+
T Consensus 536 ~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~~~~lvliT~~Gyi 614 (800)
T TIGR01063 536 FIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQ-PDERITAILSVKEFDDGLYLFFATKNGVV 614 (800)
T ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCC-CCCeEEEEEEeccCCCCCEEEEEeCCCEE
Confidence 455443 345568899999999998433322221111111111111121 2236776655 22357888999988
Q ss_pred EEEecCCCCCCCCCCCCCcccccceE-EeccCCceEEEEe--cCCceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccc
Q 014122 145 YMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (430)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~ 221 (430)
--.-.+.+-.... .... +..-.+..++.+. ....+.+++|++|++|.+-...--..+.....
T Consensus 615 KRi~l~~~~~~~r---------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~G------ 679 (800)
T TIGR01063 615 KKTSLTEFSNIRS---------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARG------ 679 (800)
T ss_pred EEEEhHHhhhhcc---------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCC------
Confidence 7654333211000 0000 1111233444443 33446888999999999866544333332210
Q ss_pred ccccccCcceeecccCccEEEEEeC--CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeee--cC-CCCeeeEE--
Q 014122 222 RSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI--SK-LPYSEEVV-- 294 (430)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i--~~-~~~i~~v~-- 294 (430)
.. .+..-++.+|+.+..- ..+.+++|++|.+...-....-....+ ...-..+ .. .+.+..+.
T Consensus 680 ---v~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~----~kGv~~ikl~~~~d~lv~~~~v 748 (800)
T TIGR01063 680 ---VR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG----GKGVKSIKITDRNGQVVGAIAV 748 (800)
T ss_pred ---ee----cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC----CcceEEEEccCCCCeEEEEEEe
Confidence 00 1222233456555432 235677788887766532221111100 0001111 11 12233222
Q ss_pred eeCCeEEEEEcCCCEEEEeCCC
Q 014122 295 CGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 295 ~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
...+..++++++|++..+-.++
T Consensus 749 ~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 749 DDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred cCCCeEEEEecCCeEEEeeHhh
Confidence 2344577788888887765443
No 43
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=64.83 E-value=2.3e+02 Score=31.44 Aligned_cols=132 Identities=12% Similarity=-0.045 Sum_probs=71.1
Q ss_pred ceEEEEeC--CcceEEEECCCCEEEEecCCCCccccCCCCCccccceE-eccCCCcEEEEEcCC-----CeEEEEEcCCc
Q 014122 72 SLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLR-ISGLKKEVVQISTGY-----HHSSAITVDGE 143 (430)
Q Consensus 72 ~I~~i~~G--~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~-i~~l~~~i~~i~~G~-----~~~~~lt~~G~ 143 (430)
.+..+..+ .++.+++|+.|++|.-=...-................. +..-+++|+.+.+-. .+.+++|++|.
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~ 632 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGG 632 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCe
Confidence 45554433 55678899999999875433222111101111111110 110134777766643 34789999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC-----ceeEEEEcCCcEEEeecCCCCCCCCC
Q 014122 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGHG 212 (430)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~wG~n~~gqlg~~ 212 (430)
|.-.--..+-.. . ..-.-+..-.+..++.+.... .+.+++|++|.+.-|-.+.-..+|+.
T Consensus 633 VKrt~L~ef~~~------r---~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~ 697 (957)
T PRK13979 633 IKKTSLDKFVTN------Y---TKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRN 697 (957)
T ss_pred EEEEehhhcccc------c---cceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCC
Confidence 887654332110 0 011112222455666655433 35788999999998877766556653
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=64.63 E-value=2.1e+02 Score=30.97 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=56.3
Q ss_pred eccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC---cceEEEECCCCEEEEe
Q 014122 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---AHTLFLTETGCVYATG 96 (430)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~---~~~~~lt~~G~vy~wG 96 (430)
..+++.....++.+...++.|.+|-....-.-+ .....|..... ....|..++... ...+.-..||.|..|=
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----RDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccc----cccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 334444455667777789999999754310000 01111211111 122455555432 2334445688999995
Q ss_pred cCCCCccccCCCCCccccceEeccCCCcEEEEEcC---CCeEEEEEcCCcEEEEecC
Q 014122 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 97 ~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G---~~~~~~lt~~G~vy~~G~n 150 (430)
..... ....+..-...|..++.. ....+.-..+|.|..|-..
T Consensus 562 ~~~~~------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 562 VARSQ------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred CCCCe------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 33211 111222223356666653 2334455568899999754
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.41 E-value=1.1e+02 Score=28.35 Aligned_cols=137 Identities=17% Similarity=0.251 Sum_probs=73.0
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC---CcceEEEECCCCEEEEecCC-CCccc
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLND-FGQLG 104 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G---~~~~~~lt~~G~vy~wG~n~-~g~lg 104 (430)
.+.+....||.||.-+++. |.+|+- ++. + -.++.+..| .-|.+++..||..|.+-... .++++
T Consensus 64 p~dvapapdG~VWft~qg~-gaiGhL--dP~---------t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d 130 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGT-GAIGHL--DPA---------T-GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD 130 (353)
T ss_pred ccccccCCCCceEEecCcc-ccceec--CCC---------C-CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEec
Confidence 3445566899999866554 334432 111 1 134444444 34788888899888875432 22222
Q ss_pred cCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecC-CCCCCCCCCCCCcccccceEEeccCCceEEEEe
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN-SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n-~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (430)
.. +-+....|. + .+..-+.-.+++++..|+||..|.+ .+|.|-......+..+.| .
T Consensus 131 pk-t~evt~f~l-----p---~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------q 187 (353)
T COG4257 131 PK-TLEVTRFPL-----P---LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------Q 187 (353)
T ss_pred Cc-ccceEEeec-----c---cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------C
Confidence 11 111111111 1 2334455678999999999999864 234332221111111122 1
Q ss_pred cCCceeEEEEcCCcEEEe
Q 014122 184 LGFEQSVAVTGGGKVLSW 201 (430)
Q Consensus 184 ~g~~~~~~lt~~g~v~~w 201 (430)
-+.-..++.|-+|+||.-
T Consensus 188 G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 GGGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCCcceEECCCCcEEEE
Confidence 123357889999999975
No 46
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=59.19 E-value=29 Score=19.53 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=20.8
Q ss_pred ceEEEEecCCceeEEEEcCCcEEEe
Q 014122 177 IFTKQAALGFEQSVAVTGGGKVLSW 201 (430)
Q Consensus 177 ~~i~~i~~g~~~~~~lt~~g~v~~w 201 (430)
+.|+.|++|.....+.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 4689999999999999998766543
No 47
>PRK05560 DNA gyrase subunit A; Validated
Probab=57.91 E-value=2.8e+02 Score=30.18 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=89.0
Q ss_pred ceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccce--eeCccCCCceEEEEeCC-----cceEEEEC
Q 014122 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGG-----AHTLFLTE 88 (430)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~--~v~~~~~~~I~~i~~G~-----~~~~~lt~ 88 (430)
++....+..+..+.-++..++.|.+|..=... +....-..+-.|. .+...++++|+.+.+-. ...+++|+
T Consensus 536 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk 612 (805)
T PRK05560 536 DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATK 612 (805)
T ss_pred CCeeEEEEEecCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeC
Confidence 44444544555555555556888888875543 2222111222222 23445677888877654 34688899
Q ss_pred CCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccc
Q 014122 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIP 166 (430)
Q Consensus 89 ~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~ 166 (430)
+|.+----.+.+-....+ -.....+. -.+.++.+. ...++.+++|++|++|.+-...-...+........
T Consensus 613 ~GyiKRi~l~~~~~~~r~-----G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~-- 684 (805)
T PRK05560 613 NGTVKKTSLSEFSNIRSN-----GIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRG-- 684 (805)
T ss_pred CCEEEEEEhHHhhhcccC-----CceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCccc--
Confidence 997665432222110000 01111111 122444333 34567999999999999876554433332211111
Q ss_pred cceEEeccCCceEEEEecCC---ceeEEEEcCCcEEEee
Q 014122 167 IPTKVECLSGIFTKQAALGF---EQSVAVTGGGKVLSWG 202 (430)
Q Consensus 167 ~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~wG 202 (430)
+..-.+.+|+.+.+-. .+.+++|+.|.+.-.-
T Consensus 685 ----i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~ 719 (805)
T PRK05560 685 ----IKLREGDEVVSMDVVREDSQEILTVTENGYGKRTP 719 (805)
T ss_pred ----ccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEE
Confidence 1112345666665533 2577788888766553
No 48
>PHA03098 kelch-like protein; Provisional
Probab=56.91 E-value=2.3e+02 Score=28.89 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=10.4
Q ss_pred EEEECCCCEEEEec
Q 014122 84 LFLTETGCVYATGL 97 (430)
Q Consensus 84 ~~lt~~G~vy~wG~ 97 (430)
.++.-++.||+.|-
T Consensus 289 ~~~~~~~~lyv~GG 302 (534)
T PHA03098 289 GSVVLNNVIYFIGG 302 (534)
T ss_pred eEEEECCEEEEECC
Confidence 45566778999984
No 49
>PHA02713 hypothetical protein; Provisional
Probab=55.97 E-value=2.5e+02 Score=29.00 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=10.2
Q ss_pred eEEEECCceEEEec
Q 014122 360 TAAISEGKILTWGW 373 (430)
Q Consensus 360 ~~~l~~g~v~~wG~ 373 (430)
.++..+|+||+-|-
T Consensus 507 ~~~~~~~~iyv~Gg 520 (557)
T PHA02713 507 HTILHDNTIMMLHC 520 (557)
T ss_pred eeEEECCEEEEEee
Confidence 34444999999985
No 50
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=54.45 E-value=2.1e+02 Score=27.57 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.2
Q ss_pred CeEEEEecCCcEEEE
Q 014122 248 LHSACIDENGRVYIF 262 (430)
Q Consensus 248 ~~~~~lt~~g~vy~w 262 (430)
...++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 457778899999986
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=52.83 E-value=2.5e+02 Score=27.98 Aligned_cols=238 Identities=14% Similarity=0.082 Sum_probs=104.8
Q ss_pred EEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEE--ECCCCEEEEecCCCCccccCC
Q 014122 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISE 107 (430)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~l--t~~G~vy~wG~n~~g~lg~~~ 107 (430)
.++..+-|+.|++|=.-..+.+=.. ..-...|++-..+.+.--..++++.+.++=| ++.|++-.-....
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-------- 299 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRT-FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-------- 299 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehh-hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC--------
Confidence 3444567899999985554433221 1112334443334443344555555555443 3445554433221
Q ss_pred CCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc
Q 014122 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (430)
Q Consensus 108 ~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 187 (430)
..|.-++.-++. .+-+++=..+++|..|..... .+ . ...-..+.... .|.-+.-|..
T Consensus 300 -----~~~~cvkf~pd~-------~n~fl~G~sd~ki~~wDiRs~-kv-----v---qeYd~hLg~i~--~i~F~~~g~r 356 (503)
T KOG0282|consen 300 -----KVPTCVKFHPDN-------QNIFLVGGSDKKIRQWDIRSG-KV-----V---QEYDRHLGAIL--DITFVDEGRR 356 (503)
T ss_pred -----CCceeeecCCCC-------CcEEEEecCCCcEEEEeccch-HH-----H---HHHHhhhhhee--eeEEccCCce
Confidence 233333322222 233445567899999975321 00 0 00111111111 2333333333
Q ss_pred eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCC
Q 014122 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAV 267 (430)
Q Consensus 188 ~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~ 267 (430)
.+--++++.|.+|-... +.. ......|.+.. .+-+.+.-...+.++-+-++.++++.....
T Consensus 357 -FissSDdks~riWe~~~------~v~--------ik~i~~~~~hs----mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 357 -FISSSDDKSVRIWENRI------PVP--------IKNIADPEMHT----MPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred -EeeeccCccEEEEEcCC------Ccc--------chhhcchhhcc----CcceecCCCCCeehhhccCceEEEEecccc
Confidence 33334566777773311 000 00111111111 134445555566667777888888865442
Q ss_pred CccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCC
Q 014122 268 DKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLG 321 (430)
Q Consensus 268 gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG 321 (430)
-++-. .....=..+.+..--.+.+......+-=+.+|.||.|+++..-.+.
T Consensus 418 ~r~nk---kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 418 FRLNK---KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred cccCH---hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence 22211 0001111111111111222233444446678999999998865443
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=52.64 E-value=58 Score=29.50 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=41.1
Q ss_pred EEEeC-CcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCC
Q 014122 75 ALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 75 ~i~~G-~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (430)
+++.+ ++-+..+..||+|++.|-....-.-.-........+..+..+..--.......+-.+.|..+|+||.++.+.
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 36677 455888999999999985431110000000011112222222211112223455578999999999998753
No 53
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=48.63 E-value=20 Score=21.94 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=15.4
Q ss_pred ceEEEECCCCEEEEecCC
Q 014122 82 HTLFLTETGCVYATGLND 99 (430)
Q Consensus 82 ~~~~lt~~G~vy~wG~n~ 99 (430)
+.++++.+|+||+.|...
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 578999999999999754
No 54
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.68 E-value=3.5e+02 Score=30.70 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=36.3
Q ss_pred EEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC-----ceeEEEEcCCcEEEeecCC
Q 014122 136 SAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGG 205 (430)
Q Consensus 136 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~wG~n~ 205 (430)
+-+|-|+++|.|-.++.+++-.=+...... -.+..++..+|- .|.+++...-+|+..|-..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtI---------l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTI---------LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhh---------eeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 678899999999988766653211111000 111122222222 3889998888999988643
No 55
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=46.17 E-value=68 Score=30.57 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=72.1
Q ss_pred EEecCCceeEEEEcCCc-EEEeecCCCCCCCCCCCCccccccccccccCcc-eeecccCccEEEEEeCCCeEEEEecCCc
Q 014122 181 QAALGFEQSVAVTGGGK-VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR-LIKELEGVKVKIAAAGFLHSACIDENGR 258 (430)
Q Consensus 181 ~i~~g~~~~~~lt~~g~-v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~ 258 (430)
.|.+|...-++++.+|+ +|+-. -.+.+..++........+. .....|. .|..+.+.+. ...-+.+.++++.||+
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~-T~~sR~~rG~RtDvv~~~D-~~TL~~~~EI~iP~k~R~--~~~~~~~~~~ls~dgk 107 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAE-TFYSRGTRGERTDVVEIWD-TQTLSPTGEIEIPPKPRA--QVVPYKNMFALSADGK 107 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEE-EEEEETTEEEEEEEEEEEE-TTTTEEEEEEEETTS-B----BS--GGGEEE-TTSS
T ss_pred EeecccCCceeECCCCCEEEEEE-EEEeccccccceeEEEEEe-cCcCcccceEecCCcchh--eecccccceEEccCCc
Confidence 56778888888887775 44322 1223333444333222221 1112221 2222221122 2334666778887777
Q ss_pred -EEEEecCCCCccccCCCCCCCCCeeecCCCCeeeE-EeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccC
Q 014122 259 -VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEV-VCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQG 336 (430)
Q Consensus 259 -vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v-~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~ 336 (430)
+|.+-..-..-...-+......-.+++ .+....| -.|......+..||.+....-...|+-- ...+.+-.
T Consensus 108 ~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-------~~~t~~F~ 179 (342)
T PF06433_consen 108 FLYVQNFTPATSVTVVDLAAKKVVGEID-TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-------QKSTKVFD 179 (342)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEE-GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-------EEEEEESS
T ss_pred EEEEEccCCCCeEEEEECCCCceeeeec-CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-------EeeccccC
Confidence 555421110000000000000001111 1122222 2355556678888888887766655432 11112221
Q ss_pred CCCCCCcccccceEEEEeecCceeEEEE-CCceEEEec
Q 014122 337 PFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGW 373 (430)
Q Consensus 337 ~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~ 373 (430)
+ ...++-. + -.......+.+.++ +|+||.--.
T Consensus 180 ~-~~dp~f~---~-~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 180 P-DDDPLFE---H-PAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp T-TTS-B-S------EEETTTTEEEEEBTTSEEEEEEE
T ss_pred C-CCccccc---c-cceECCCCeEEEEecCCEEEEEec
Confidence 1 1111111 0 00234556777788 999988544
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.42 E-value=3e+02 Score=26.47 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=61.7
Q ss_pred hcccceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEEC--C
Q 014122 12 YYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE--T 89 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~--~ 89 (430)
|..-.+-...+++..+..+..+-..|...|+|-.+..- .+..+..-+ ..|+.+....+-+++.|- +
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------~~~eltgHK-DSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------FAGELTGHK-DSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------ceeEecCCC-CceEEEEEccCceEEEecCCC
Confidence 33334444555555555555555566666666554411 222222222 257777777777777766 4
Q ss_pred CCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCC
Q 014122 90 GCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQL 155 (430)
Q Consensus 90 G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gql 155 (430)
|+|.+|=....+ .-.++..--..|.-+.= -....++=+++|.||+|--++.+++
T Consensus 128 G~v~v~~~stg~------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 128 GKVLVFKVSTGG------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred ccEEEEEcccCc------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence 888888543211 11111100012333322 2234556678999999987664443
No 57
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=42.66 E-value=46 Score=31.25 Aligned_cols=66 Identities=8% Similarity=0.110 Sum_probs=46.4
Q ss_pred ccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcc--eEEEECCCCEEEEe
Q 014122 23 KLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATG 96 (430)
Q Consensus 23 ~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~--~~~lt~~G~vy~wG 96 (430)
++..++.|+..-.+.|.||+|---. .++...++....-.+..|+|.+...+- -+++++++.||-|-
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3444566666677889999997433 233356667777777889998877554 45567889999884
No 58
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=42.01 E-value=2e+02 Score=29.93 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=50.3
Q ss_pred CCcEEEEEEcCCCCccCCCCC--CCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccc
Q 014122 36 QRRFAALWGNGDYGRLGLGSL--ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSL 113 (430)
Q Consensus 36 ~~~~v~~wG~n~~G~LG~~~~--~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~ 113 (430)
-++.||+.|--+. |.... ..++.|..-.+. ++-.....+....+..-+|.||+-|--. |.-...
T Consensus 331 ~~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~---~~a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~------- 396 (571)
T KOG4441|consen 331 LNGKLYVVGGYDS---GSDRLSSVERYDPRTNQWT---PVAPMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLN------- 396 (571)
T ss_pred ECCEEEEEccccC---CCcccceEEEecCCCCcee---ccCCccCccccceeEEECCEEEEEeccc-cccccc-------
Confidence 5679999883332 22211 123333333221 1333445555566777789999998432 221111
Q ss_pred cceEeccCCC---cEEEEEcCCCeEEEEEcCCcEEEEecCC
Q 014122 114 EPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 114 ~p~~i~~l~~---~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (430)
.-.......+ .+-.+.-.+....+..-+|+||+.|-..
T Consensus 397 svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred cEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 1111111111 1112333455566667789999998643
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.74 E-value=3.8e+02 Score=30.30 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=65.1
Q ss_pred ccccceee-eEEEeccCCcEEEEEEcCCCCccCC-CCCC--CcccceeeCccCCCceEEEE-eCCcce-EEEECCCCEEE
Q 014122 21 GSKLGICK-RWISSTLQRRFAALWGNGDYGRLGL-GSLE--SRWRPVVCSAFEKHSLKALA-CGGAHT-LFLTETGCVYA 94 (430)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~~~v~~wG~n~~G~LG~-~~~~--~~~~p~~v~~~~~~~I~~i~-~G~~~~-~~lt~~G~vy~ 94 (430)
..+....| ++|.+.+.||.|-+|-.-+ ..|. +..+ .++.| ++.++..|. |+..+. ++-+.||.|-+
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYSP------EGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEec------cCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 33444445 9999999999999998766 2333 2222 23333 445666665 444333 33488999999
Q ss_pred EecCCCCccccCCCCCccccceEeccCC--CcEEEEEcC----CC-eEEEEEcCCcEEEEecC
Q 014122 95 TGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQISTG----YH-HSSAITVDGELYMWGKN 150 (430)
Q Consensus 95 wG~n~~g~lg~~~~~~~~~~p~~i~~l~--~~i~~i~~G----~~-~~~~lt~~G~vy~~G~n 150 (430)
.+-+.+.+ ......-.+++++. ..++++-+- .. -.++.|..+.+-.|+.-
T Consensus 1125 ~~id~~~~------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1125 LRIDHYNV------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEcccccc------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 88765411 11111112222222 255555441 22 35777888899998753
No 60
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=40.66 E-value=2.8e+02 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=17.3
Q ss_pred eCCeEEEEEcCCCEEEEeCCC
Q 014122 296 GGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 296 G~~~~~~l~~~g~v~~wG~n~ 316 (430)
-+|-+..+..||+|+..|-..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CccccceECCCCCEEEEeCcC
Confidence 477888889999999998544
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=39.18 E-value=3.7e+02 Score=26.09 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=14.3
Q ss_pred eCCeEEEEEcCCCEEEEe
Q 014122 296 GGYHTCVLTSGGELYTWG 313 (430)
Q Consensus 296 G~~~~~~l~~~g~v~~wG 313 (430)
...+.++.+++|+||++-
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 356788889999999864
No 62
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=39.08 E-value=4.6e+02 Score=27.20 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=15.2
Q ss_pred EeecCceeEEEE-CCceEEEec
Q 014122 353 VSCGWKHTAAIS-EGKILTWGW 373 (430)
Q Consensus 353 i~~G~~h~~~l~-~g~v~~wG~ 373 (430)
+.....+..+.. ++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 555666666666 999999874
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=38.97 E-value=3e+02 Score=25.05 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=43.6
Q ss_pred cceeeCccCCCceEEEE-eCCcceEEE-ECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc-CCCeEEE
Q 014122 61 RPVVCSAFEKHSLKALA-CGGAHTLFL-TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-GYHHSSA 137 (430)
Q Consensus 61 ~p~~v~~~~~~~I~~i~-~G~~~~~~l-t~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~-G~~~~~~ 137 (430)
.|.++..-++ .|+.+- |-.+++++- +.++.|-.|-.-.. ..-..+. ++..+.++-. -..+.+.
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg------------t~v~sL~-~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTG------------TEVQSLE-FNSPVTSLEVSQDGRILT 200 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEeccC------------cEEEEEe-cCCCCcceeeccCCCEEE
Confidence 3444444333 477765 667777665 67888999965321 1111222 3334444332 2334444
Q ss_pred EEcCCcEEEEecCCCCCC
Q 014122 138 ITVDGELYMWGKNSNGQL 155 (430)
Q Consensus 138 lt~~G~vy~~G~n~~gql 155 (430)
+..-+.|-.|-.+.++-|
T Consensus 201 ia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred EecCceeEEeccccccce
Confidence 555556777877777654
No 64
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.79 E-value=80 Score=23.05 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=29.1
Q ss_pred ccceEeccCCCcEEEEEcC-CCeEEEEEcCCcEEEEecCCCCCC
Q 014122 113 LEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQL 155 (430)
Q Consensus 113 ~~p~~i~~l~~~i~~i~~G-~~~~~~lt~~G~vy~~G~n~~gql 155 (430)
.-|..+. +...=..|+|. ....++|++||.+|.-+--..|.+
T Consensus 7 t~Pa~i~-~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASIN-LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEE-TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccc-ccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 3455555 55567789999 889999999999999986555554
No 65
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.64 E-value=59 Score=23.71 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=29.2
Q ss_pred CCeeecCCCCeeeEEee-CCeEEEEEcCCCEEEEeCCCCCCC
Q 014122 280 RPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTWGSNENGCL 320 (430)
Q Consensus 280 ~p~~i~~~~~i~~v~~G-~~~~~~l~~~g~v~~wG~n~~gqL 320 (430)
.|-.+..-..-..|+|. ....++|++||.+|.-+--+.|.+
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45666666677889999 888899999999999887666654
No 66
>PHA03098 kelch-like protein; Provisional
Probab=36.37 E-value=3.8e+02 Score=27.27 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=10.5
Q ss_pred EEEECCCCEEEEec
Q 014122 84 LFLTETGCVYATGL 97 (430)
Q Consensus 84 ~~lt~~G~vy~wG~ 97 (430)
.+..-+|+||++|-
T Consensus 384 ~~~~~~~~iYv~GG 397 (534)
T PHA03098 384 CVVNVNNLIYVIGG 397 (534)
T ss_pred eEEEECCEEEEECC
Confidence 34556889999985
No 67
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=35.14 E-value=4.1e+02 Score=29.03 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=33.4
Q ss_pred eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEec
Q 014122 83 TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (430)
Q Consensus 83 ~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~ 149 (430)
.+-+|.|.+|..|-.|+....-.- .+...+-.++.-...+.--...-=.|.+++...-+||..|-
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~i--dd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgv 159 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEI--DDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGV 159 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhh--hhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEE
Confidence 356899999999987753221100 01111111111000011111223368888888888998885
No 68
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=35.04 E-value=3.9e+02 Score=25.19 Aligned_cols=27 Identities=7% Similarity=0.265 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 121 LKKEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 121 l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
+...|+.|..-+++.++++++- +|+|-
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~-I~Vyt 119 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENK-IYVYT 119 (346)
T ss_pred eccceeeEEEcCCeEEEEecCe-EEEEE
Confidence 5568999999999998888874 55554
No 69
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=33.95 E-value=40 Score=21.54 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=12.1
Q ss_pred ceeEEEECCceEEEec
Q 014122 358 KHTAAISEGKILTWGW 373 (430)
Q Consensus 358 ~h~~~l~~g~v~~wG~ 373 (430)
.|++++.++++|+||=
T Consensus 4 ~hs~~~~~~kiyv~GG 19 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGG 19 (49)
T ss_pred ceEEEEECCEEEEECC
Confidence 3555545999999995
No 70
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=33.62 E-value=6.6e+02 Score=27.36 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=43.7
Q ss_pred eCCcceEEEECCCC-EEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcE--EEEec
Q 014122 78 CGGAHTLFLTETGC-VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGEL--YMWGK 149 (430)
Q Consensus 78 ~G~~~~~~lt~~G~-vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~v--y~~G~ 149 (430)
.++...++++.+|+ |+++|.+..-..-- .......|..+....+.|..|++-..+.+.=++++.| |.++.
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~--~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWK--TNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEee--cCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 34566777788877 66676654332211 1122245666665566888999988888888888865 55444
No 71
>PLN02153 epithiospecifier protein
Probab=33.60 E-value=4.2e+02 Score=25.09 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=10.8
Q ss_pred eEEEEcCCcEEEeec
Q 014122 189 SVAVTGGGKVLSWGA 203 (430)
Q Consensus 189 ~~~lt~~g~v~~wG~ 203 (430)
++.+..+++||.||-
T Consensus 308 ~~~v~~~~~~~~~gG 322 (341)
T PLN02153 308 TATVYGKNGLLMHGG 322 (341)
T ss_pred ccccCCcceEEEEcC
Confidence 455566779999975
No 72
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=33.54 E-value=79 Score=17.55 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.1
Q ss_pred eEEEEEcCCcEEEEecC
Q 014122 134 HSSAITVDGELYMWGKN 150 (430)
Q Consensus 134 ~~~~lt~~G~vy~~G~n 150 (430)
+.++++.+|+||+.-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56778889999987654
No 73
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=33.50 E-value=5.2e+02 Score=26.13 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=33.3
Q ss_pred cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc-eeEEEEcCCcEEEee
Q 014122 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE-QSVAVTGGGKVLSWG 202 (430)
Q Consensus 124 ~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~wG 202 (430)
+-.-|.||..|.++.+-.|..+.=-.. .++.-+...|..++-+.+ -.+-=+++|.+++|+
T Consensus 213 ~nliit~Gk~H~~Fw~~~~~~l~k~~~-------------------~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 213 PNLIITCGKGHLYFWTLRGGSLVKRQG-------------------IFEKREKKFVLCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred CcEEEEeCCceEEEEEccCCceEEEee-------------------ccccccceEEEEEEEcCCCCEEeecCCceEEEEe
Confidence 455677888887777666544432111 111111223455554443 344456788999997
Q ss_pred c
Q 014122 203 A 203 (430)
Q Consensus 203 ~ 203 (430)
.
T Consensus 274 ~ 274 (626)
T KOG2106|consen 274 K 274 (626)
T ss_pred C
Confidence 6
No 74
>PLN02153 epithiospecifier protein
Probab=32.25 E-value=4.4e+02 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=12.1
Q ss_pred ceeEEEEcCCcEEEeecC
Q 014122 187 EQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~n 204 (430)
.|++++. ++++|++|--
T Consensus 130 ~~~~~~~-~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMASD-ENHVYVFGGV 146 (341)
T ss_pred eeEEEEE-CCEEEEECCc
Confidence 5666654 6799999754
No 75
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.32 E-value=51 Score=20.89 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=11.6
Q ss_pred CceeEEEEcCCcEEEeec
Q 014122 186 FEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 186 ~~~~~~lt~~g~v~~wG~ 203 (430)
..|+++...+++||++|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 358888887789999974
No 76
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.22 E-value=6.5e+02 Score=26.26 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=60.2
Q ss_pred CceEEEEeCCcceEEEE--CCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 71 HSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 71 ~~I~~i~~G~~~~~~lt--~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
.++++|.....-..+|+ -+|+|-.|-... ........+..+|-+..++.+-.+-.++=++|.+|-++-
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyet----------qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYET----------QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEeccc----------ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 46888887766655554 489999996543 222233344444445555556666777777888888876
Q ss_pred cCCCCCCCCCCCCCcccccceEEec--cCCceEEEEecCCceeEEEEcCC
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVEC--LSGIFTKQAALGFEQSVAVTGGG 196 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~--~~~~~i~~i~~g~~~~~~lt~~g 196 (430)
.|+.- ++.. .-..-|++|+.-...-.+|+++.
T Consensus 84 ynt~e----------------kV~~FeAH~DyIR~iavHPt~P~vLtsSD 117 (794)
T KOG0276|consen 84 YNTGE----------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSD 117 (794)
T ss_pred cccce----------------eeEEeeccccceeeeeecCCCCeEEecCC
Confidence 66421 1211 12234777777666677777654
No 77
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=29.63 E-value=1.2e+02 Score=28.61 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=37.3
Q ss_pred eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeE--EEEecCCcEEEEec
Q 014122 189 SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHS--ACIDENGRVYIFGD 264 (430)
Q Consensus 189 ~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~--~~lt~~g~vy~wG~ 264 (430)
.++....|+||+|-.... .+...+.......+..|.+.+....-+ +++.+++.||.|-.
T Consensus 322 la~gnq~g~v~vwdL~~~-----------------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNN-----------------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCCC-----------------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 344467899999965321 111334445555566788777665544 55688999999953
No 78
>PLN02193 nitrile-specifier protein
Probab=28.83 E-value=6.1e+02 Score=25.46 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=11.4
Q ss_pred ceeEEEECCceEEEec
Q 014122 358 KHTAAISEGKILTWGW 373 (430)
Q Consensus 358 ~h~~~l~~g~v~~wG~ 373 (430)
.|+++..++++|++|=
T Consensus 370 ~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 370 VFASAAVGKHIVIFGG 385 (470)
T ss_pred eeEEEEECCEEEEECC
Confidence 3555544899999985
No 79
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=28.61 E-value=2.4e+02 Score=27.41 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred eEEEEeCCcc---eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 73 LKALACGGAH---TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 73 I~~i~~G~~~---~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
+..+.++..+ .+++..+|++..|..+... .++.-...+.+|..-....+|++..|+||++.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt---------------~l~~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK---------------ALKQMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCeee---------------EccCCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3345666664 5667778888888643322 12212337889998888899999999999986
No 80
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.39 E-value=2.9e+02 Score=25.15 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=42.9
Q ss_pred ceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEE--EeCCcceEEEECCCCEEEEecCCCCc
Q 014122 25 GICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKAL--ACGGAHTLFLTETGCVYATGLNDFGQ 102 (430)
Q Consensus 25 ~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i--~~G~~~~~~lt~~G~vy~wG~n~~g~ 102 (430)
+.-+..+.+++.|+.|++|-.+.. ....++++++.|+.. +=++ +..++...+-.-|.+|.+|-.|..|+
T Consensus 220 gl~~s~iAS~SqDg~viIwt~~~e--------~e~wk~tll~~f~~~-~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWTKDEE--------YEPWKKTLLEEFPDV-VWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred CCCceeeEEecCCCcEEEEEecCc--------cCcccccccccCCcc-eEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 334555666789999999987742 234566666666552 2233 33344444444567799998887765
No 81
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=27.78 E-value=5.5e+02 Score=24.62 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=58.5
Q ss_pred eCCcceEEEECCCC-EEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCC
Q 014122 78 CGGAHTLFLTETGC-VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLG 156 (430)
Q Consensus 78 ~G~~~~~~lt~~G~-vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg 156 (430)
.-..+.+.|+.||+ +|++-.........-+ ......-..++ .|.-.--.-.|...+..|..||.+....-...|+.-
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD-l~~~kvv~ei~-~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVD-LAAKKVVGEID-TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEE-TTTTEEEEEEE-GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEE-CCCCceeeeec-CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 34667889998887 7777443322222110 01111112222 222222223455667789999999988887777642
Q ss_pred CCCCCCcccccceEEeccCCceEEE---EecCCceeEEEEcCCcEEEeec
Q 014122 157 LGKKAAKVIPIPTKVECLSGIFTKQ---AALGFEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 157 ~~~~~~~~~~~p~~i~~~~~~~i~~---i~~g~~~~~~lt~~g~v~~wG~ 203 (430)
.....+....+..+.. ......+.++++-+|+||..-.
T Consensus 172 ---------~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 172 ---------QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp ---------EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred ---------EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 1111222222222221 2235568888999999998643
No 82
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=27.69 E-value=9e+02 Score=27.03 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=66.6
Q ss_pred EEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEecc--CCceEEEEecCCc-----eeEEEEcCCcEEE
Q 014122 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--SGIFTKQAALGFE-----QSVAVTGGGKVLS 200 (430)
Q Consensus 128 i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~-----~~~~lt~~g~v~~ 200 (430)
.+...++.+++|+.|++|..=...-.+....... .+....+..+ .+.+|+.+.+-.. +.+++|++|.|.-
T Consensus 559 ~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G---~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKr 635 (957)
T PRK13979 559 QSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKG---ERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKK 635 (957)
T ss_pred EEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCC---eEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEE
Confidence 3446677899999999998755433322111111 1111222111 3567777776543 4688899998886
Q ss_pred eecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC-----CeEEEEecCCcEEEEecCCCCccc
Q 014122 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKML 271 (430)
Q Consensus 201 wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~~~~gqlg 271 (430)
.-...+- .....-..+..-++..++.+.... .+.+++|++|....|-.+.-..+|
T Consensus 636 t~L~ef~----------------~~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 636 TSLDKFV----------------TNYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred Eehhhcc----------------ccccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 6432221 000111122222333455544332 357889999988888654443333
No 83
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=27.03 E-value=5.8e+02 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.090 Sum_probs=12.9
Q ss_pred ceeEEEEcCCcEEEeecC
Q 014122 187 EQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~n 204 (430)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 356555468899999864
No 84
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=26.84 E-value=6.5e+02 Score=25.17 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=17.1
Q ss_pred CCCeEEEEEcCCcEEEEecCCCCCCC
Q 014122 131 GYHHSSAITVDGELYMWGKNSNGQLG 156 (430)
Q Consensus 131 G~~~~~~lt~~G~vy~~G~n~~gqlg 156 (430)
...+.+-=+.+|+||.|+.+..-.+.
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhh
Confidence 33444455678999999988654433
No 85
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=26.80 E-value=4.7e+02 Score=23.49 Aligned_cols=116 Identities=22% Similarity=0.181 Sum_probs=45.2
Q ss_pred EEEEeC---CcceEEEECCCCEEEEecCCCCcccc---CCCCCc--cc-cceEe--ccCCCcEEEEEcCCCe-EEEEEcC
Q 014122 74 KALACG---GAHTLFLTETGCVYATGLNDFGQLGI---SENIGY--SL-EPLRI--SGLKKEVVQISTGYHH-SSAITVD 141 (430)
Q Consensus 74 ~~i~~G---~~~~~~lt~~G~vy~wG~n~~g~lg~---~~~~~~--~~-~p~~i--~~l~~~i~~i~~G~~~-~~~lt~~ 141 (430)
++|..| ....+++..+|-||+-..+ |+|-. ..+... .. ..+.+ .+.+ .+..|.++.+- ..+++.+
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~LYaV~~~--G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~-~f~~vfa~~~GvLY~i~~d 149 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGVLYAVTPD--GKLYRHPRPTNGSDNWIGGSGKKIGGTGWN-DFDAVFAGPNGVLYAITPD 149 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS-EEEEETT---EEEEES---STT--HHH-HSEEEE-SSGG-GEEEEEE-TTS-EEEEETT
T ss_pred cccccCcccceeEEEecCCccEEEeccc--cceeeccCCCccCcchhhccceecccCCCc-cceEEEeCCCccEEEEcCC
Confidence 567777 3345566667777766553 33311 111111 11 23333 1122 35555554443 6667777
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccceEEeccC-CceEEEEecCCceeEEEEcCCcEE
Q 014122 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS-GIFTKQAALGFEQSVAVTGGGKVL 199 (430)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~-~~~i~~i~~g~~~~~~lt~~g~v~ 199 (430)
|++|-+=.- ......-......+.... +....-.+|+.....++.++|.||
T Consensus 150 g~~~~~~~p-------~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~~G~ly 201 (229)
T PF14517_consen 150 GRLYRRYRP-------DGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKSNGKLY 201 (229)
T ss_dssp E-EEEE----------SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-ETTEEE
T ss_pred CceEEeCCC-------CCCCCccccccceeccCCcccceEEeeCCCCcEEEEecCCEEe
Confidence 766665110 001111112222222111 222222346666777777888887
No 86
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=3.3e+02 Score=30.12 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=24.9
Q ss_pred eEEEEe-cCCceeEEEE--cCCcEEEeecCCCCCCCCCCC
Q 014122 178 FTKQAA-LGFEQSVAVT--GGGKVLSWGAGGSGRLGHGQE 214 (430)
Q Consensus 178 ~i~~i~-~g~~~~~~lt--~~g~v~~wG~n~~gqlg~~~~ 214 (430)
-|..+. |..+-.++|+ +|+++++|+.|.-..|+.-..
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 355555 6666555665 489999999988666655443
No 87
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.32 E-value=8.4e+02 Score=26.27 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCC----cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCC
Q 014122 83 TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK----EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLG 158 (430)
Q Consensus 83 ~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~----~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~ 158 (430)
.+++|++|-|-.---..+...+.. +.+ .....+.+.+..+++|++|++|.+-.+.-.. |.+
T Consensus 497 ~VilTk~G~IKr~~~~~~~~saik--------------LKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~-GR~ 561 (735)
T TIGR01062 497 TIILSKMGWVRSAKGHDIDLSTLK--------------YKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPS-ARG 561 (735)
T ss_pred EEEEecCCEEEeccccccchhccC--------------cCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCc-Ccc
Q ss_pred CCCCcccccceEEeccCCceEEEEecCCce--eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeeccc
Q 014122 159 KKAAKVIPIPTKVECLSGIFTKQAALGFEQ--SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236 (430)
Q Consensus 159 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~--~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~ 236 (430)
.. .+.-..+..-.+.+|+.+.+.... .+++|+.|.++..-.+.+-...++.. .....+..-..+.
T Consensus 562 aG----gpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGK---------gvi~Lk~~d~lv~ 628 (735)
T TIGR01062 562 QG----EPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGK---------ALINLPENASVIA 628 (735)
T ss_pred CC----ceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCe---------EEEEeCCCCEEEE
Q ss_pred CccEEEEEeCCCeEEEEecCCcEEEE
Q 014122 237 GVKVKIAAAGFLHSACIDENGRVYIF 262 (430)
Q Consensus 237 ~~~i~~i~~g~~~~~~lt~~g~vy~w 262 (430)
+..+.......++++++|++..+
T Consensus 629 ---v~~v~~~dd~V~liT~~GrlLrf 651 (735)
T TIGR01062 629 ---PLPVNGDSDMIAAITEAGRMLVF 651 (735)
T ss_pred ---EEEEcCCCCEEEEEeCCCcEEEE
No 88
>PF13964 Kelch_6: Kelch motif
Probab=26.00 E-value=64 Score=20.60 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=12.0
Q ss_pred ceeEEEECCceEEEec
Q 014122 358 KHTAAISEGKILTWGW 373 (430)
Q Consensus 358 ~h~~~l~~g~v~~wG~ 373 (430)
.|+++..+++||++|=
T Consensus 4 ~~s~v~~~~~iyv~GG 19 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGG 19 (50)
T ss_pred cCEEEEECCEEEEECC
Confidence 4555555999999995
No 89
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.85 E-value=8.4e+02 Score=26.12 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCeeeEEee--CCeEEEEEcCCCEEEEeCCCCCCC-CCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE
Q 014122 288 PYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCL-GIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS 364 (430)
Q Consensus 288 ~~i~~v~~G--~~~~~~l~~~g~v~~wG~n~~gqL-G~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~ 364 (430)
..+.+++.. ..|.+.-|+.|++|. ++-+..|. ..-+......|..+ ..||.+ ++++.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~-vs~D~~~~lce~~~~~~~~p~qm------------------~Wcgnd-aVvl~ 276 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWV-VSIDLSQILCEFNCTDHDPPKQM------------------AWCGND-AVVLS 276 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEE-EecchhhhhhccCCCCCCchHhc------------------eeecCC-ceEEE
Confidence 567777766 445566788999998 43332222 11121222222211 678877 77788
Q ss_pred -CCceEEEec
Q 014122 365 -EGKILTWGW 373 (430)
Q Consensus 365 -~g~v~~wG~ 373 (430)
+..|..-|.
T Consensus 277 ~e~~l~lvgp 286 (829)
T KOG2280|consen 277 WEVNLMLVGP 286 (829)
T ss_pred EeeeEEEEcC
Confidence 999988887
No 90
>PHA02790 Kelch-like protein; Provisional
Probab=25.68 E-value=1.6e+02 Score=29.69 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=12.3
Q ss_pred ceEEEECCCCEEEEecC
Q 014122 82 HTLFLTETGCVYATGLN 98 (430)
Q Consensus 82 ~~~~lt~~G~vy~wG~n 98 (430)
...+..-+|+||+.|-.
T Consensus 355 ~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 355 NPAVASINNVIYVIGGH 371 (480)
T ss_pred ccEEEEECCEEEEecCc
Confidence 34455678999999863
No 91
>PF13854 Kelch_5: Kelch motif
Probab=25.13 E-value=80 Score=19.43 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.4
Q ss_pred ceeEEEECCceEEEec
Q 014122 358 KHTAAISEGKILTWGW 373 (430)
Q Consensus 358 ~h~~~l~~g~v~~wG~ 373 (430)
.|++++.++++|++|=
T Consensus 7 ~hs~~~~~~~iyi~GG 22 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGG 22 (42)
T ss_pred ceEEEEECCEEEEEcC
Confidence 4666655999999995
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=24.96 E-value=7e+02 Score=24.89 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=51.2
Q ss_pred ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCC
Q 014122 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRA 266 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~ 266 (430)
.+.++...+|+||+|-.+.. ..+. +.++=-+-...++++.-+|++++.|+..
T Consensus 357 k~l~~~~~~GeV~v~nl~~~-----------------------~~~~-----rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQN-----------------------SCLH-----RFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred cEEEEEcCCceEEEEecCCc-----------------------ceEE-----EEeecCccceeeeeecCCCceEEeccCc
Confidence 45666677999999965421 1111 2333333356678888888888888754
Q ss_pred CCcccc---CCCCCCCCCeeecCCCCe-eeEEeeCCeEEEEEcCCCEEEEe
Q 014122 267 VDKMLF---QEGNHARRPSLISKLPYS-EEVVCGGYHTCVLTSGGELYTWG 313 (430)
Q Consensus 267 ~gqlg~---~~~~~~~~p~~i~~~~~i-~~v~~G~~~~~~l~~~g~v~~wG 313 (430)
|..-. .+--....|+++..+.++ ..|. ++....+.+|.+.-
T Consensus 409 -GiVNIYd~~s~~~s~~PkPik~~dNLtt~It-----sl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 409 -GIVNIYDGNSCFASTNPKPIKTVDNLTTAIT-----SLQFNHDAQILAIA 453 (514)
T ss_pred -ceEEEeccchhhccCCCCchhhhhhhheeee-----eeeeCcchhhhhhh
Confidence 22111 112234567777776652 2222 23444566666543
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.49 E-value=5e+02 Score=25.66 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEe----eCCeEEEEEcCCCEEEEeCCCCCCCCCCC
Q 014122 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC----GGYHTCVLTSGGELYTWGSNENGCLGIGS 324 (430)
Q Consensus 249 ~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~----G~~~~~~l~~~g~v~~wG~n~~gqLG~~~ 324 (430)
..+-+-..|+.+.|-++. ..+.+..+.......+++. -.+++.++--||-|++.| -..|++-.=+
T Consensus 307 ~~ls~h~tgeYllsAs~d----------~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg-t~d~~vkiwd 375 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASND----------GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG-TPDGVVKIWD 375 (506)
T ss_pred eeeeeccCCcEEEEecCC----------ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc-CCCceEEEEE
Q ss_pred CCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE---CCceEEE
Q 014122 325 IDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS---EGKILTW 371 (430)
Q Consensus 325 ~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~---~g~v~~w 371 (430)
......-.++.. ...+|+. |+.+.+-....+ |+.|.+|
T Consensus 376 lks~~~~a~Fpg--ht~~vk~-------i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 376 LKSQTNVAKFPG--HTGPVKA-------ISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred cCCccccccCCC--CCCceeE-------EEeccCceEEEEEecCCeEEEE
No 94
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=23.95 E-value=9.7e+02 Score=26.18 Aligned_cols=138 Identities=15% Similarity=0.096 Sum_probs=71.9
Q ss_pred EEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCE--EEEecCCCCccccCC
Q 014122 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCV--YATGLNDFGQLGISE 107 (430)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~v--y~wG~n~~g~lg~~~ 107 (430)
|++++.+++.+..|=.|. +...|.-+.. .+..|..|++-..+.+.=++++.| |-++.....
T Consensus 27 fi~tcgsdg~ir~~~~~s----------d~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~------ 89 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNS----------DEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED------ 89 (933)
T ss_pred EEEEecCCCceEEeecCC----------cccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCcc------
Confidence 555555555555554443 2234444443 456788999999888888888875 444432211
Q ss_pred CCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEE--EEecC
Q 014122 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK--QAALG 185 (430)
Q Consensus 108 ~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~--~i~~g 185 (430)
... .++. +|-+.+.+..++...++=.+|=.|-+--....+|. ....+ -+.+|. +...-
T Consensus 90 ---~iL--~Rft-lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------~~lrg------h~apVl~l~~~p~ 149 (933)
T KOG1274|consen 90 ---TIL--ARFT-LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------KVLRG------HDAPVLQLSYDPK 149 (933)
T ss_pred ---cee--eeee-ccceEEEEecCCcEEEeecCceeEEEEeccccchh--------eeecc------cCCceeeeeEcCC
Confidence 111 1222 44456666666666655555544444322211110 00000 011233 33345
Q ss_pred CceeEEEEcCCcEEEeecC
Q 014122 186 FEQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 186 ~~~~~~lt~~g~v~~wG~n 204 (430)
..+.+..+-+|+|++|-..
T Consensus 150 ~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred CCEEEEEecCceEEEEEcc
Confidence 5567777889999999653
No 95
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.48 E-value=3.5e+02 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=42.6
Q ss_pred eEEEEecCCce---eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEe
Q 014122 178 FTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254 (430)
Q Consensus 178 ~i~~i~~g~~~---~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 254 (430)
.+..+.++.++ .+++..+|++.-|..+... .+. .....+.+|..=....+|++
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt-----------------------~l~-~~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK-----------------------ALK-QMGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeee-----------------------Ecc-CCCceeeEEEEECCEEEEEc
Confidence 35557777776 6777789999888532111 111 12335788887777888899
Q ss_pred cCCcEEEEe
Q 014122 255 ENGRVYIFG 263 (430)
Q Consensus 255 ~~g~vy~wG 263 (430)
..|+||.+.
T Consensus 217 ~~G~l~~i~ 225 (373)
T PLN03215 217 SIGIVYWIN 225 (373)
T ss_pred CCCeEEEEe
Confidence 999999986
No 96
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=22.35 E-value=6.5e+02 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=12.5
Q ss_pred CCeEEEEEcCCcEEEEecC
Q 014122 132 YHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 132 ~~~~~~lt~~G~vy~~G~n 150 (430)
+.+.++..-+++||++|-.
T Consensus 162 r~~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGG 180 (323)
T ss_pred CCcceEEEECCEEEEEcCC
Confidence 3344445567899999853
No 97
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=22.14 E-value=2.8e+02 Score=19.34 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCeEEEEEcCCcEEEEecCCC
Q 014122 123 KEVVQISTGYHHSSAITVDGELYMWGKNSN 152 (430)
Q Consensus 123 ~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~ 152 (430)
.+.+.+-+-..+.++|++.|.-|+|-.+..
T Consensus 25 ~P~~n~LsNg~y~~mvt~~G~GySw~~~~~ 54 (66)
T PF06204_consen 25 APWVNVLSNGSYGVMVTNSGSGYSWAKNSR 54 (66)
T ss_dssp S--EEEE-SSSEEEEEETTSBEEEEES-TT
T ss_pred CCEEEEeeCCcEEEEEcCCCceeecccccC
Confidence 367777788899999999999999987643
No 98
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.99 E-value=1.3e+03 Score=26.49 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=59.4
Q ss_pred ceEEEEecCCce-eEEEE--cCCcEEEeecCCCCCCCC-CCCCccccccccccccCcceeecccCccEEEEE-eCCCeEE
Q 014122 177 IFTKQAALGFEQ-SVAVT--GGGKVLSWGAGGSGRLGH-GQESSILGFLRSTSEYTPRLIKELEGVKVKIAA-AGFLHSA 251 (430)
Q Consensus 177 ~~i~~i~~g~~~-~~~lt--~~g~v~~wG~n~~gqlg~-~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~-~g~~~~~ 251 (430)
..+.+++....| +++++ +||.|-+|-.-+- .|. +... -...-.+.+.++..+. |+..+.+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~r-------------S~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSAR-------------SELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceee-------------eeEEEeccCCceEEEEeccCCCeE
Confidence 356688888888 66664 6899999965322 222 1111 1111122333454442 3333333
Q ss_pred EE-ecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC---CeeeEEe-----eCCeEEEEEcCCCEEEEeCCC
Q 014122 252 CI-DENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP---YSEEVVC-----GGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 252 ~l-t~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~---~i~~v~~-----G~~~~~~l~~~g~v~~wG~n~ 316 (430)
|+ ++||.|-..+-+.+.+ ......-.++++++ .+.++-+ +..-.++.|..+.+..|+...
T Consensus 1114 Av~t~DG~v~~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEcCCCeEEEEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 33 8899998887655311 01111112222222 2333322 121234577788888888543
No 99
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=20.83 E-value=2e+02 Score=25.73 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=39.9
Q ss_pred EEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCC--eEEEEEcCCcEEEEec
Q 014122 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGK 149 (430)
Q Consensus 76 i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~--~~~~lt~~G~vy~~G~ 149 (430)
|..+....++.+.+|.||+|=.|.+|++-.- .+... +....-|..++. ..++-..+|+++.|-.
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~---e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGE---ESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHh-------hhccc---ccceeccccccccceeEEeccCCceeeecc
Confidence 4444556778999999999988877664211 11111 112334556777 5566667889998854
Done!