Query 014122
Match_columns 430
No_of_seqs 215 out of 2382
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 5.6E-73 1.9E-77 553.0 32.2 369 29-429 11-387 (389)
2 4d9s_A UVB-resistance protein 100.0 9.9E-70 3.4E-74 532.8 39.5 363 12-408 11-378 (406)
3 1a12_A RCC1, regulator of chro 100.0 2.1E-69 7.2E-74 532.3 40.3 376 24-429 15-409 (413)
4 3mvd_K Regulator of chromosome 100.0 4E-69 1.4E-73 532.3 41.1 386 13-429 20-418 (423)
5 3of7_A Regulator of chromosome 100.0 1.9E-68 6.6E-73 533.5 37.5 375 23-429 16-450 (473)
6 4d9s_A UVB-resistance protein 100.0 5.1E-64 1.7E-68 492.3 37.5 327 71-429 16-347 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 1.9E-61 6.6E-66 471.5 31.0 325 18-364 54-385 (389)
8 1a12_A RCC1, regulator of chro 100.0 7.2E-60 2.5E-64 464.3 34.6 332 17-368 59-412 (413)
9 3mvd_K Regulator of chromosome 100.0 7.3E-59 2.5E-63 458.9 32.2 323 69-429 22-364 (423)
10 3of7_A Regulator of chromosome 100.0 1.2E-57 4.2E-62 455.4 35.9 333 16-364 66-448 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 3E-52 1E-56 387.5 32.1 270 39-429 3-272 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1E-47 3.6E-52 357.0 27.4 251 18-369 25-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.9 0.022 7.6E-07 54.9 29.8 220 28-314 143-363 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.07 2.4E-06 51.4 36.5 261 26-373 127-389 (445)
15 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.1 3.6E-06 50.2 31.2 219 28-316 169-391 (445)
16 1p22_A F-BOX/WD-repeat protein 97.0 0.27 9.3E-06 47.1 30.4 227 72-373 135-363 (435)
17 3k26_A Polycomb protein EED; W 96.8 0.31 1.1E-05 44.8 25.1 109 71-204 70-191 (366)
18 4aez_A CDC20, WD repeat-contai 96.3 0.79 2.7E-05 43.2 27.0 138 31-204 106-247 (401)
19 4gbf_A Phikz131; 7-bladed beta 96.1 0.014 4.9E-07 50.7 7.1 72 71-155 309-380 (400)
20 3odt_A Protein DOA1; ubiquitin 95.9 0.87 3E-05 40.6 28.9 258 26-373 27-294 (313)
21 3odt_A Protein DOA1; ubiquitin 95.4 1.4 4.7E-05 39.3 25.5 185 71-316 105-296 (313)
22 4gbf_A Phikz131; 7-bladed beta 95.1 0.055 1.9E-06 47.0 7.3 70 124-208 310-379 (400)
23 1yfq_A Cell cycle arrest prote 94.9 2.1 7.3E-05 38.6 25.7 245 20-315 15-281 (342)
24 3mmy_A MRNA export factor; mRN 94.7 2.4 8.3E-05 38.5 25.2 195 69-316 38-247 (368)
25 3v7d_B Cell division control p 94.7 3.2 0.00011 39.6 31.6 230 30-316 175-421 (464)
26 3v7d_B Cell division control p 94.5 3.5 0.00012 39.3 33.9 234 27-316 131-381 (464)
27 1r5m_A SIR4-interacting protei 94.4 3.2 0.00011 38.6 21.7 138 81-265 218-360 (425)
28 1r5m_A SIR4-interacting protei 94.2 3.6 0.00012 38.3 24.3 230 27-315 119-360 (425)
29 1gxr_A ESG1, transducin-like e 94.1 3 0.0001 37.3 33.2 231 30-315 13-254 (337)
30 3sfz_A APAF-1, apoptotic pepti 93.7 9.8 0.00033 41.6 26.8 191 72-316 1005-1207(1249)
31 1gxr_A ESG1, transducin-like e 93.1 4.6 0.00016 36.1 32.4 188 71-316 98-296 (337)
32 3jrp_A Fusion protein of prote 93.0 5.2 0.00018 36.5 26.4 197 72-316 13-240 (379)
33 2zwa_A Leucine carboxyl methyl 92.9 2.2 7.4E-05 43.9 15.6 20 296-315 597-616 (695)
34 4g56_B MGC81050 protein; prote 92.8 5.8 0.0002 36.6 25.2 189 72-316 141-343 (357)
35 3zwl_B Eukaryotic translation 92.6 5.8 0.0002 35.9 26.8 191 27-264 43-247 (369)
36 1sq9_A Antiviral protein SKI8; 92.5 6.5 0.00022 36.3 26.3 110 29-151 27-157 (397)
37 4a11_B DNA excision repair pro 92.2 7 0.00024 36.0 30.7 252 27-316 55-323 (408)
38 1k3i_A Galactose oxidase precu 91.6 13 0.00044 37.7 20.7 22 297-318 457-478 (656)
39 3mkq_A Coatomer beta'-subunit; 91.3 15 0.0005 37.9 28.4 229 20-316 17-259 (814)
40 4aow_A Guanine nucleotide-bind 91.3 7.9 0.00027 34.6 28.5 223 29-315 52-285 (340)
41 3jro_A Fusion protein of prote 91.2 15 0.00052 37.8 26.0 241 21-316 14-285 (753)
42 2aq5_A Coronin-1A; WD40 repeat 90.7 11 0.00036 35.2 24.0 143 33-203 52-205 (402)
43 3sfz_A APAF-1, apoptotic pepti 90.6 11 0.00038 41.2 19.0 223 27-313 1014-1246(1249)
44 4aez_A CDC20, WD repeat-contai 90.5 11 0.00038 35.0 24.9 69 71-150 177-247 (401)
45 3vl1_A 26S proteasome regulato 90.5 11 0.00038 35.0 29.1 139 24-203 64-210 (420)
46 3mkq_A Coatomer beta'-subunit; 90.4 18 0.0006 37.2 27.5 187 72-315 15-216 (814)
47 1sq9_A Antiviral protein SKI8; 89.7 12 0.00042 34.3 24.5 155 29-204 82-266 (397)
48 3jrp_A Fusion protein of prote 89.3 12 0.00042 33.8 27.6 235 22-315 17-286 (379)
49 2zwa_A Leucine carboxyl methyl 89.2 21 0.00073 36.4 20.2 64 80-150 441-509 (695)
50 3k26_A Polycomb protein EED; W 88.6 13 0.00046 33.4 25.4 203 71-316 19-260 (366)
51 4gga_A P55CDC, cell division c 88.5 16 0.00056 34.2 27.4 109 71-203 148-259 (420)
52 1vyh_C Platelet-activating fac 88.3 17 0.00057 34.1 28.3 138 28-203 120-263 (410)
53 3i2n_A WD repeat-containing pr 88.2 14 0.00048 33.1 28.1 195 71-316 66-291 (357)
54 4g56_B MGC81050 protein; prote 88.0 16 0.00054 33.5 30.4 190 72-314 96-299 (357)
55 2pm9_A Protein WEB1, protein t 86.6 20 0.00067 33.1 23.8 200 71-317 114-338 (416)
56 3jro_A Fusion protein of prote 85.1 37 0.0013 34.9 26.5 197 72-316 11-238 (753)
57 1xip_A Nucleoporin NUP159; bet 84.8 20 0.00067 33.8 14.2 75 113-203 79-153 (388)
58 2xyi_A Probable histone-bindin 84.7 26 0.0009 32.9 27.7 249 28-315 141-409 (430)
59 3no0_A DNA gyrase subunit A; D 84.4 22 0.00074 31.6 19.3 219 15-271 22-251 (276)
60 4ery_A WD repeat-containing pr 84.0 22 0.00075 31.4 27.9 186 23-266 30-223 (312)
61 3mmy_A MRNA export factor; mRN 83.8 24 0.00081 31.6 22.4 149 123-316 40-199 (368)
62 1pgu_A Actin interacting prote 83.1 36 0.0012 33.2 30.1 64 73-150 301-365 (615)
63 3uc1_A DNA gyrase subunit A; D 82.9 28 0.00096 31.8 24.3 215 77-316 50-279 (327)
64 1k8k_C P40, ARP2/3 complex 41 82.5 27 0.00094 31.4 25.5 249 22-316 14-274 (372)
65 3i2n_A WD repeat-containing pr 81.7 28 0.00097 31.0 25.9 143 82-266 131-291 (357)
66 2pm9_A Protein WEB1, protein t 81.4 33 0.0011 31.5 26.6 200 71-315 68-293 (416)
67 2xzm_R RACK1; ribosome, transl 80.9 32 0.0011 31.0 29.7 106 28-150 39-148 (343)
68 3ow8_A WD repeat-containing pr 80.2 33 0.0011 30.8 26.6 218 29-315 49-278 (321)
69 1pgu_A Actin interacting prote 80.1 46 0.0016 32.4 32.0 105 71-203 254-364 (615)
70 1k8k_C P40, ARP2/3 complex 41 80.1 33 0.0011 30.8 24.8 123 71-203 97-231 (372)
71 2ymu_A WD-40 repeat protein; u 80.0 46 0.0016 32.3 29.2 103 72-202 305-413 (577)
72 1zi0_A DNA gyrase subunit A; b 79.4 36 0.0012 30.7 23.8 217 76-316 49-277 (307)
73 1suu_A DNA gyrase subunit A; t 78.9 37 0.0013 30.7 22.8 222 71-316 47-283 (312)
74 4gqb_B Methylosome protein 50; 78.9 38 0.0013 30.8 26.8 219 31-315 96-330 (344)
75 2aq5_A Coronin-1A; WD40 repeat 77.5 44 0.0015 30.7 27.0 156 75-265 39-206 (402)
76 3uc1_A DNA gyrase subunit A; D 77.3 43 0.0015 30.5 23.1 230 15-271 40-284 (327)
77 1erj_A Transcriptional repress 76.9 46 0.0016 30.7 21.0 125 72-203 208-339 (393)
78 3gre_A Serine/threonine-protei 75.9 51 0.0017 30.6 21.2 154 22-204 117-291 (437)
79 1xip_A Nucleoporin NUP159; bet 74.6 48 0.0017 31.0 13.2 98 73-201 90-187 (388)
80 3vl1_A 26S proteasome regulato 74.3 53 0.0018 30.1 31.0 68 71-150 140-211 (420)
81 1yfq_A Cell cycle arrest prote 74.0 47 0.0016 29.4 28.9 201 71-316 12-225 (342)
82 3no0_A DNA gyrase subunit A; D 72.8 51 0.0017 29.2 22.4 215 70-320 23-250 (276)
83 1k3i_A Galactose oxidase precu 72.5 83 0.0028 31.6 24.6 70 248-318 458-533 (656)
84 4gqb_B Methylosome protein 50; 72.2 57 0.002 29.6 30.8 231 29-314 33-287 (344)
85 2ynn_A Coatomer subunit beta'; 68.3 62 0.0021 28.4 28.4 187 72-315 15-216 (304)
86 3iz6_a 40S ribosomal protein R 67.9 73 0.0025 29.1 23.6 72 240-314 252-327 (380)
87 2pbi_B Guanine nucleotide-bind 66.8 74 0.0025 28.7 21.5 99 28-150 166-270 (354)
88 2ymu_A WD-40 repeat protein; u 66.6 95 0.0033 29.9 28.8 180 72-313 346-536 (577)
89 3frx_A Guanine nucleotide-bind 66.4 70 0.0024 28.3 27.2 100 29-149 31-136 (319)
90 3l6v_A GYRA, DNA gyrase subuni 62.6 98 0.0034 28.7 25.1 133 71-212 46-187 (370)
91 3ow8_A WD repeat-containing pr 61.9 87 0.003 27.8 25.7 172 84-313 138-318 (321)
92 1got_B GT-beta; complex (GTP-b 61.4 90 0.0031 27.9 30.2 225 27-314 66-299 (340)
93 3p6j_A De novo designed beta-t 61.2 58 0.002 25.6 12.6 108 70-200 29-138 (142)
94 2ynn_A Coatomer subunit beta'; 60.7 86 0.003 27.4 27.0 232 17-316 14-259 (304)
95 3gre_A Serine/threonine-protei 60.3 1.1E+02 0.0036 28.3 20.7 161 71-265 64-244 (437)
96 1wp5_A Topoisomerase IV; broke 60.2 1E+02 0.0034 28.0 25.1 221 76-319 46-280 (323)
97 1suu_A DNA gyrase subunit A; t 59.1 1E+02 0.0035 27.7 22.6 227 15-266 45-283 (312)
98 1zgk_A Kelch-like ECH-associat 58.8 96 0.0033 27.3 12.7 16 187-203 161-176 (308)
99 2pbi_B Guanine nucleotide-bind 58.5 1E+02 0.0036 27.7 30.7 227 27-314 75-313 (354)
100 1vyh_C Platelet-activating fac 58.2 1.2E+02 0.004 28.1 26.2 67 72-150 194-264 (410)
101 3ii7_A Kelch-like protein 7; p 57.4 64 0.0022 28.4 10.0 18 297-315 239-256 (306)
102 3ei3_B DNA damage-binding prot 57.3 1.1E+02 0.0038 27.6 30.0 181 29-266 87-282 (383)
103 4a11_B DNA excision repair pro 56.4 1.1E+02 0.0039 27.4 35.0 206 70-316 43-276 (408)
104 4ggc_A P55CDC, cell division c 56.2 99 0.0034 26.7 28.8 109 72-203 69-179 (318)
105 3dm0_A Maltose-binding peripla 54.5 1.8E+02 0.0061 29.1 27.4 103 28-149 395-501 (694)
106 3ei3_B DNA damage-binding prot 53.2 1.3E+02 0.0044 27.1 24.3 190 72-316 75-282 (383)
107 1got_B GT-beta; complex (GTP-b 52.5 1.3E+02 0.0043 26.8 22.9 107 72-203 186-299 (340)
108 3no2_A Uncharacterized protein 50.3 1.3E+02 0.0044 26.2 23.3 25 239-263 177-203 (276)
109 4aow_A Guanine nucleotide-bind 48.4 1.4E+02 0.0047 26.0 26.7 26 178-203 217-244 (340)
110 1rwi_B Serine/threonine-protei 48.4 1.2E+02 0.0042 25.5 16.5 16 299-314 237-252 (270)
111 3dwl_C Actin-related protein 2 47.2 1.6E+02 0.0053 26.3 30.4 154 20-204 15-176 (377)
112 2xyi_A Probable histone-bindin 45.2 1.9E+02 0.0065 26.7 27.6 208 72-316 130-353 (430)
113 2oaj_A Protein SNI1; WD40 repe 44.5 3E+02 0.01 28.8 18.4 104 21-150 22-128 (902)
114 3zwl_B Eukaryotic translation 44.4 1.6E+02 0.0056 25.8 30.5 198 72-315 34-248 (369)
115 1wp5_A Topoisomerase IV; broke 44.1 1.8E+02 0.0062 26.2 25.0 230 14-270 36-281 (323)
116 3f3f_A Nucleoporin SEH1; struc 43.5 1.6E+02 0.0055 25.4 26.8 121 20-151 15-143 (351)
117 3frx_A Guanine nucleotide-bind 40.5 1.9E+02 0.0064 25.4 25.5 138 27-203 76-225 (319)
118 3bws_A Protein LP49; two-domai 39.2 2.2E+02 0.0077 25.9 24.2 26 72-97 171-198 (433)
119 1rwi_B Serine/threonine-protei 38.6 1.7E+02 0.006 24.4 17.0 16 299-314 195-210 (270)
120 3ii7_A Kelch-like protein 7; p 38.0 2E+02 0.0069 25.0 14.9 16 187-203 193-208 (306)
121 2xzm_R RACK1; ribosome, transl 35.6 2.3E+02 0.0079 25.0 26.6 139 28-203 88-242 (343)
122 1q7f_A NHL, brain tumor CG1071 35.5 2.1E+02 0.007 24.4 21.3 16 249-264 210-225 (286)
123 3vu4_A KMHSV2; beta-propeller 34.8 2.5E+02 0.0085 25.1 22.8 159 72-266 102-271 (355)
124 2j04_A TAU60, YPL007P, hypothe 33.5 3.7E+02 0.013 26.6 15.2 162 17-204 86-253 (588)
125 1zi0_A DNA gyrase subunit A; b 29.9 3E+02 0.01 24.5 24.2 224 15-267 40-278 (307)
126 3dm0_A Maltose-binding peripla 29.7 4.2E+02 0.015 26.2 26.2 142 27-203 441-590 (694)
127 1q7f_A NHL, brain tumor CG1071 29.4 2.6E+02 0.0089 23.7 20.7 15 300-314 211-225 (286)
128 3f3f_A Nucleoporin SEH1; struc 29.4 2.7E+02 0.0092 23.8 26.4 120 72-204 13-142 (351)
129 3dw8_B Serine/threonine-protei 29.3 3.3E+02 0.011 24.8 23.3 262 16-312 93-442 (447)
130 3q7m_A Lipoprotein YFGL, BAMB; 29.0 3.1E+02 0.011 24.5 12.8 16 297-312 359-374 (376)
131 4asc_A Kelch repeat and BTB do 27.9 3E+02 0.01 23.9 10.4 16 82-98 142-157 (315)
132 3l6v_A GYRA, DNA gyrase subuni 27.5 3.6E+02 0.012 24.8 24.1 133 16-157 45-186 (370)
133 1zvu_A Topoisomerase IV subuni 27.3 4.2E+02 0.014 26.9 10.8 123 128-271 510-638 (716)
134 1zvt_A Topoisomerase IV subuni 25.9 3.2E+02 0.011 23.5 15.6 125 128-272 40-169 (256)
135 3e5z_A Putative gluconolactona 25.7 3.1E+02 0.011 23.4 16.1 13 135-147 119-131 (296)
136 3fvz_A Peptidyl-glycine alpha- 25.3 2.2E+02 0.0074 25.1 8.0 108 82-206 199-313 (329)
137 3bws_A Protein LP49; two-domai 24.8 3.9E+02 0.013 24.2 22.9 11 193-203 322-332 (433)
138 4e54_B DNA damage-binding prot 24.2 4.2E+02 0.014 24.3 23.1 67 71-149 120-194 (435)
139 4asc_A Kelch repeat and BTB do 24.1 3.6E+02 0.012 23.5 11.5 16 187-203 189-204 (315)
140 1zvt_A Topoisomerase IV subuni 23.8 3.5E+02 0.012 23.3 16.6 156 135-320 5-167 (256)
141 4ggc_A P55CDC, cell division c 22.3 3.6E+02 0.012 22.9 24.8 21 130-150 160-180 (318)
142 1zvu_A Topoisomerase IV subuni 21.9 6.3E+02 0.022 25.6 11.2 130 15-157 501-639 (716)
143 1erj_A Transcriptional repress 21.8 4.4E+02 0.015 23.7 26.5 113 72-204 167-286 (393)
144 2vpj_A Kelch-like protein 12; 21.4 3.9E+02 0.013 22.9 19.4 229 37-313 14-260 (301)
145 2uvk_A YJHT; unknown function, 21.1 1.5E+02 0.0053 26.5 6.2 17 186-203 110-126 (357)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-73 Score=553.00 Aligned_cols=369 Identities=29% Similarity=0.498 Sum_probs=328.1
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCC
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISEN 108 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~ 108 (430)
..+...+++++||+||.|.+||||.+..++...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~- 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG- 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-
Confidence 3444455899999999999999999988888999999998888999999999999999999999999999999999984
Q ss_pred CCccccceEeccCCC---cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC
Q 014122 109 IGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (430)
Q Consensus 109 ~~~~~~p~~i~~l~~---~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g 185 (430)
......|.+++.+.. ++++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+++.+.+.+|++|+||
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEEEC
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEEEEeC
Confidence 455678888876654 568899999999999999999999999999999988765 678888988888899999999
Q ss_pred CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC--CeEEEEecCCcEEEEe
Q 014122 186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFG 263 (430)
Q Consensus 186 ~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG 263 (430)
..|+++|+++|+||+||.|.++|||.+.. .....|..+..+.+.+|++|+||. .|+++|+++|+||+||
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~---------~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDS---------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCC---------cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 99999999999999999999999999876 455678888888888999999995 8999999999999999
Q ss_pred cCCCCccccCCCCCCCCCeeecCCC--CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCC
Q 014122 264 DRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSES 341 (430)
Q Consensus 264 ~~~~gqlg~~~~~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~ 341 (430)
.|.++|||.+.......|.++..+. +|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.. +...
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~ 317 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGK 317 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTC
T ss_pred CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc-CCCC
Confidence 9999999999888888899998776 499999999999999999999999999999999999888888988874 2222
Q ss_pred CcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEEecCCeeEEEEeccC
Q 014122 342 PVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGF 420 (430)
Q Consensus 342 ~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~ 420 (430)
+|++|+||.+|++|++ +|+||+||+ |++||||+++......|++|+.+.+.+|++|+||.
T Consensus 318 -------~v~~ia~G~~h~~al~~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~ 378 (389)
T 3kci_A 318 -------KVIAIATGSLHCVCCTEDGEVYTWGD------------NDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGS 378 (389)
T ss_dssp -------CEEEEEECSSEEEEEETTCCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEET
T ss_pred -------CEEEEEeccCeEEEECCCCCEEEeeC------------CCCCcCCCCCCCCccCcEEecccCCCCEEEEEecC
Confidence 4666999999999999 999999999 79999999999999999999999999999999999
Q ss_pred CceEEEEee
Q 014122 421 NHTGALLEY 429 (430)
Q Consensus 421 ~~t~~l~~~ 429 (430)
+||++|.++
T Consensus 379 ~ht~al~~~ 387 (389)
T 3kci_A 379 AHTLAWSTS 387 (389)
T ss_dssp TEEEEECC-
T ss_pred CcEEEEecC
Confidence 999999875
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=9.9e-70 Score=532.79 Aligned_cols=363 Identities=33% Similarity=0.585 Sum_probs=327.7
Q ss_pred hcccceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCC-
Q 014122 12 YYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETG- 90 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G- 90 (430)
+..+...+..+++|..|+++++ +++.||+||.|.+||||.+...++..|.+++.+.+.+|++|+||..|+++|+++|
T Consensus 11 v~~~~~~v~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 11 VTAPPRKVLIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ----CCCEEEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred CCCCccceEEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 3444556678899999999998 8999999999999999999999999999999999889999999999999999986
Q ss_pred CEEEEecCCCCccccCCCCCccccceEeccCCC-cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccce
Q 014122 91 CVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPT 169 (430)
Q Consensus 91 ~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~ 169 (430)
+||+||.|.+||||.+.. .....|.++..+.. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.
T Consensus 89 ~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p~ 165 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVPQ 165 (406)
T ss_dssp EEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEEE
T ss_pred EEEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC--cccce
Confidence 999999999999999844 55678888887665 899999999999999999999999999999999988765 57788
Q ss_pred EEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCe
Q 014122 170 KVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH 249 (430)
Q Consensus 170 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~ 249 (430)
++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|..+..+...+|++|+||.+|
T Consensus 166 ~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~---------~~~~~p~~v~~~~~~~i~~va~G~~h 236 (406)
T 4d9s_A 166 KIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR---------TDRLVPERVTSTGGEKMSMVACGWRH 236 (406)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS---------CCEEEEEECCCSTTCCEEEEEECSSE
T ss_pred EecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC---------CCcCccEEecccCCceEEEEEECCCc
Confidence 888888889999999999999999999999999999999999875 44567888887777899999999999
Q ss_pred EEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCC--eeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCC
Q 014122 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDV 327 (430)
Q Consensus 250 ~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~--i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~ 327 (430)
+++|+++|+||+||.|.++|||.++......|.++..+.+ |++|+||.+|+++|+++|+||+||.|.+||||.++...
T Consensus 237 t~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 316 (406)
T 4d9s_A 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 316 (406)
T ss_dssp EEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSC
T ss_pred EEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCC
Confidence 9999999999999999999999998888888999987764 99999999999999999999999999999999998888
Q ss_pred cCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEE
Q 014122 328 LHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVN 406 (430)
Q Consensus 328 ~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~ 406 (430)
...|.++..+ .. .+|++|+||.+|++||+ +|+||+||+ |.+||||+++..+...|++|+
T Consensus 317 ~~~p~~v~~~-~~-------~~v~~va~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~ 376 (406)
T 4d9s_A 317 QCSPVQVRFP-DD-------QKVVQVSCGWRHTLAVTERNNVFAWGR------------GTNGQLGIGESVDRNFPKIIE 376 (406)
T ss_dssp EEEEEEECCG-GG-------CCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCCCEEEEEECG
T ss_pred CccCEEEecc-CC-------CcEEEEEeCCCeEEEEeCCCCEEEecC------------CCCCccCCCCCCCCcCCEEee
Confidence 8888888643 11 35777999999999999 999999999 799999999999999999998
Q ss_pred ec
Q 014122 407 FG 408 (430)
Q Consensus 407 ~~ 408 (430)
.+
T Consensus 377 ~l 378 (406)
T 4d9s_A 377 AL 378 (406)
T ss_dssp GG
T ss_pred ee
Confidence 64
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-69 Score=532.26 Aligned_cols=376 Identities=28% Similarity=0.430 Sum_probs=321.4
Q ss_pred cceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCC-cccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCc
Q 014122 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQ 102 (430)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~-~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~ 102 (430)
.+..|+++++ +++.||+||.|.+||||.+.... +..|.++..+ .+|++|+||..|+++|+++|+||+||.|.+||
T Consensus 15 ~~~~h~~~l~--~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~Gq 90 (413)
T 1a12_A 15 VKVSHRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA 90 (413)
T ss_dssp CCCCCTTCCC--CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred hccccceeec--CCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCC
Confidence 3456888777 89999999999999999998665 6788888865 57999999999999999999999999999999
Q ss_pred cccCCCC-CccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEec--CCCCCCCCCCCCCcccccceEEeccCCceE
Q 014122 103 LGISENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (430)
Q Consensus 103 lg~~~~~-~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i 179 (430)
||.+... .....|.++. ++.+|++|+||..|+++|+++|+||+||. |.+||||.+.... ....|.++ +...+|
T Consensus 91 LG~~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~-~~~~P~~v--~~~~~i 166 (413)
T 1a12_A 91 LGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQV--QLDVPV 166 (413)
T ss_dssp TCSCCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB-CEEEEEEE--CCSSCE
T ss_pred CCCCCCCCccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccc-cccCCEEe--cCCCCE
Confidence 9998653 4567788885 67799999999999999999999999998 9999999876543 23457666 356689
Q ss_pred EEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccc--cccccccCcceeecc-----cCccEEEEEeCCCeEEE
Q 014122 180 KQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKEL-----EGVKVKIAAAGFLHSAC 252 (430)
Q Consensus 180 ~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~~~-----~~~~i~~i~~g~~~~~~ 252 (430)
++|+||..|+++|+++|+||+||.|.++|||.+........ ........|+.+... ...+|++|+||.+|+++
T Consensus 167 ~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~a 246 (413)
T 1a12_A 167 VKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFA 246 (413)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEE
T ss_pred EEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEE
Confidence 99999999999999999999999999999998754211000 000123556555432 34579999999999999
Q ss_pred EecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCC----eeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCC-CCCC
Q 014122 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG-SIDV 327 (430)
Q Consensus 253 lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~----i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~-~~~~ 327 (430)
|+++|+||+||.|.++|||.+.......|.++..+.+ |++|+||.+|+++|+++|+||+||.|.+||||.+ +...
T Consensus 247 lt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~ 326 (413)
T 1a12_A 247 ISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE 326 (413)
T ss_dssp EETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCC
T ss_pred EeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCcc
Confidence 9999999999999999999998888888999987654 9999999999999999999999999999999998 5666
Q ss_pred cCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEE
Q 014122 328 LHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVN 406 (430)
Q Consensus 328 ~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~ 406 (430)
...|.+|... .+|++|+||.+|++|++ +|+||+||. |.+||||+++..+...|++|+
T Consensus 327 ~~~P~~v~~l----------~~v~~v~~G~~hs~alt~~G~v~~wG~------------n~~gqLG~g~~~~~~~P~~v~ 384 (413)
T 1a12_A 327 KSIPTLISRL----------PAVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDEDAWSPVEMM 384 (413)
T ss_dssp EEEEEECCSS----------SSEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCSCEEEEEECC
T ss_pred ccCCEEeccc----------CceeEEEECcceEEEEeCCCCEEEecC------------CCCCCCCCCCCCCcccCeEcc
Confidence 7788888642 14667999999999999 999999999 799999999998888999998
Q ss_pred e--cCCeeEEEEeccCCceEEEEee
Q 014122 407 F--GENVKALQVSCGFNHTGALLEY 429 (430)
Q Consensus 407 ~--~~~~~v~~i~~G~~~t~~l~~~ 429 (430)
. +.+.+|++|+||.+||++|+++
T Consensus 385 ~~~~~~~~v~~v~~G~~ht~~l~~~ 409 (413)
T 1a12_A 385 GKQLENRVVLSVSSGGQHTVLLVKD 409 (413)
T ss_dssp STTTTTEEEEEEEECSSEEEEEEEE
T ss_pred ccccCCCeEEEEeeCCCcEEEEEec
Confidence 5 5778999999999999999875
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4e-69 Score=532.26 Aligned_cols=386 Identities=26% Similarity=0.353 Sum_probs=324.9
Q ss_pred cccceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCC-CCcccceeeCccCCCceEEEEeCCcceEEEECCCC
Q 014122 13 YLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL-ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~-~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~ 91 (430)
.+....+..++++..|..+++ ++++||+||.|.+||||.+.. .....|.+++.+++ |++|+||..|+++|+++|+
T Consensus 20 ~~~~~~~~~ia~g~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~~G~ 95 (423)
T 3mvd_K 20 QPPKAKRARIAFHLELPKRRT--VLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGD 95 (423)
T ss_dssp ---------CCCCCCCCCCCC--CCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEETTSC
T ss_pred CCccceeeEEecCCccceeec--CCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeCCCe
Confidence 344455567889999999988 999999999999999999964 45678999888765 8999999999999999999
Q ss_pred EEEEecCCCCccccCCCCC-ccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEec--CCCCCCCCCCCCCcccccc
Q 014122 92 VYATGLNDFGQLGISENIG-YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIP 168 (430)
Q Consensus 92 vy~wG~n~~g~lg~~~~~~-~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~p 168 (430)
||+||.|.+||||.+.... ....|.++. ++.+|++|+||+.|+++|+++|+||+||. |.+||||.+.... .+.|
T Consensus 96 v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~~~p 172 (423)
T 3mvd_K 96 IYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--KRTP 172 (423)
T ss_dssp EEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--EEEE
T ss_pred EEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--Ccee
Confidence 9999999999999986443 357788887 66799999999999999999999999998 9999999877655 3445
Q ss_pred eEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccc--cccccccCcceeecccCccEEEEEeC
Q 014122 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKELEGVKVKIAAAG 246 (430)
Q Consensus 169 ~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~~~~~~~i~~i~~g 246 (430)
.+ .+...+|++|+||.+|+++|+++|+||+||.|.++|||.+........ ........|..+..+...+|++|+||
T Consensus 173 ~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g 250 (423)
T 3mvd_K 173 ID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT 250 (423)
T ss_dssp EE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE
T ss_pred eE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC
Confidence 44 456778999999999999999999999999999999999865432211 11234567888877777789999999
Q ss_pred CCeEEEE-ecCCcEEEEecCCCCccccCCC--CCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCC
Q 014122 247 FLHSACI-DENGRVYIFGDRAVDKMLFQEG--NHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (430)
Q Consensus 247 ~~~~~~l-t~~g~vy~wG~~~~gqlg~~~~--~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~ 323 (430)
.+|++++ +++|+||+||.|.++|||.+.. .....|.++. +.+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 251 ~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g 329 (423)
T 3mvd_K 251 NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG 329 (423)
T ss_dssp TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSS
T ss_pred CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCC
Confidence 9999999 6999999999999999998543 3344566665 6789999999999999999999999999999999999
Q ss_pred CCCC-cCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccc
Q 014122 324 SIDV-LHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIH 401 (430)
Q Consensus 324 ~~~~-~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~ 401 (430)
+... ...|.++... . .+|++|+||.+|++||+ +|+||+||. |.+||||+++..+..+
T Consensus 330 ~~~~~~~~p~~v~~l-~--------~~v~~ia~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~~~~ 388 (423)
T 3mvd_K 330 DVKDVVEKPTIVKKL-T--------EKIVSVGCGEVCSYAVTIDGKLYSWGS------------GVNNQLGVGDGDDELE 388 (423)
T ss_dssp SCCSCEEEEEECTTC-C--------SCEEEEEEETTEEEEEETTSCEEEEEC------------CTTSCSSSSSSCCEEE
T ss_pred CccccccCceEeccC-C--------CCEEEEEcCCCeEEEEcCCCCEEEECC------------CCCCCCCCCCCCCccc
Confidence 7655 4567777642 1 14666999999999999 999999999 7999999999999999
Q ss_pred cEEEEe--cCCeeEEEEeccCCceEEEEee
Q 014122 402 PTIVNF--GENVKALQVSCGFNHTGALLEY 429 (430)
Q Consensus 402 p~~v~~--~~~~~v~~i~~G~~~t~~l~~~ 429 (430)
|++|.. +.+.+|++|+||.+||++|+++
T Consensus 389 P~~v~~~~~~~~~v~~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 389 PIVVVSKNTQGKHMLLASGGGQHAIFLVKA 418 (423)
T ss_dssp EEECCSTTTTTCCEEEEEECSSEEEEEEEC
T ss_pred CeEEeCcccCCCEEEEEEECCCcEEEEEcc
Confidence 999986 6788999999999999999975
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-68 Score=533.52 Aligned_cols=375 Identities=25% Similarity=0.383 Sum_probs=315.3
Q ss_pred ccceeeeEEEeccCCcEEEEEEcCCCCccCCCCC---CCcccceeeCcc--CCCceEEEEeCCcceEEEECCCCEEEEec
Q 014122 23 KLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL---ESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGL 97 (430)
Q Consensus 23 ~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~---~~~~~p~~v~~~--~~~~I~~i~~G~~~~~~lt~~G~vy~wG~ 97 (430)
.....|.++++ ++++||+||.|.+||||.+.. .+...|.+++.+ .+.+|++|+||..|+++|+++|+||+||.
T Consensus 16 ~~~~~h~~~~~--~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 16 QEDYKHMYLSV--QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp GGGGHHHHCCS--SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred cccccccccCC--CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeEC
Confidence 34445666666 789999999999999999984 345778888777 56689999999999999999999999999
Q ss_pred CCCCccccCCCCCc----------------------cccceEecc--CC-----CcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 98 NDFGQLGISENIGY----------------------SLEPLRISG--LK-----KEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 98 n~~g~lg~~~~~~~----------------------~~~p~~i~~--l~-----~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
|.+||||.+..... ...|.+++. ++ .+|++|+||..|+++|+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEee
Confidence 99999998754431 567888876 54 59999999999999999999999999
Q ss_pred c--CCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccc
Q 014122 149 K--NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (430)
Q Consensus 149 ~--n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~ 226 (430)
. +..||||...........|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.++|||.+..... ....
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~-----~~~~ 248 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF-----RLKT 248 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG-----TTTT
T ss_pred CCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc-----cccc
Confidence 8 68899998666555578899999888889999999999999999999999999999999999864321 1223
Q ss_pred cCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCC----CCCCCeeecCCC--CeeeEEeeCCeE
Q 014122 227 YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLISKLP--YSEEVVCGGYHT 300 (430)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~----~~~~p~~i~~~~--~i~~v~~G~~~~ 300 (430)
..|..+.. .+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|+++..+. +|++|+||.+|+
T Consensus 249 ~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs 325 (473)
T 3of7_A 249 LDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325 (473)
T ss_dssp CSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEE
T ss_pred cCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeE
Confidence 45555532 479999999999999999999999999999999987654 345688887664 699999999999
Q ss_pred EEEEcCCCEEEEeCCCCCCCCCCCCC--------------CcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-C
Q 014122 301 CVLTSGGELYTWGSNENGCLGIGSID--------------VLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-E 365 (430)
Q Consensus 301 ~~l~~~g~v~~wG~n~~gqLG~~~~~--------------~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~ 365 (430)
++|+++|+||+||.|.+||||.+... ....|..+... .+|++|+||.+|++||+ +
T Consensus 326 ~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~----------~~v~~Ia~G~~hs~al~~~ 395 (473)
T 3of7_A 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV----------PKFKSVAAGSHHSVAVAQN 395 (473)
T ss_dssp EEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS----------CCEEEEEECSSEEEEEETT
T ss_pred EEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC----------CceEEEEeCCCeEEEEeCC
Confidence 99999999999999999999987431 12234444321 15777999999999999 9
Q ss_pred CceEEEecCCCCCccccCCCCCCCccCCcC-CCCccccEEEEe--cCCeeEEEEeccCCceEEEEee
Q 014122 366 GKILTWGWGGSHGTFSEDGHSSGGQLGHGN-DVDYIHPTIVNF--GENVKALQVSCGFNHTGALLEY 429 (430)
Q Consensus 366 g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~-~~~~~~p~~v~~--~~~~~v~~i~~G~~~t~~l~~~ 429 (430)
|+||+||+ |.+||||+++ ......|++|+. +.+.+|++|+||.+||+++.+.
T Consensus 396 G~vy~wG~------------n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 396 GIAYSWGF------------GETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp SCEEEEEC------------CTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CcEEEeeC------------CCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 99999999 7999999999 778889999984 5778999999999999999864
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5.1e-64 Score=492.26 Aligned_cols=327 Identities=33% Similarity=0.593 Sum_probs=297.7
Q ss_pred CceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCC-cEEEEEcCCCeEEEEEcCC-cEEEEe
Q 014122 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG-ELYMWG 148 (430)
Q Consensus 71 ~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G-~vy~~G 148 (430)
.+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++..++. +|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCc-ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 57999999999999999999999999999999999844 44588888887765 8999999999999999986 999999
Q ss_pred cCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccC
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYT 228 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~ 228 (430)
.|.+||||.+.... ...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.++|||.+.. .....
T Consensus 95 ~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~---------~~~~~ 163 (406)
T 4d9s_A 95 WGDFGRLGHGNSSD--LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT---------EDSLV 163 (406)
T ss_dssp CCGGGTTCSSSCCC--EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC---------CCEEE
T ss_pred CCCCcCCCCCCCCc--cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC---------CCccc
Confidence 99999999988765 56788888888889999999999999999999999999999999999875 45567
Q ss_pred cceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC--CeeeEEeeCCeEEEEEcC
Q 014122 229 PRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSG 306 (430)
Q Consensus 229 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~~ 306 (430)
|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+. +|++|+||.+|+++|+++
T Consensus 164 p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~ 243 (406)
T 4d9s_A 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYS 243 (406)
T ss_dssp EEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETT
T ss_pred ceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCC
Confidence 888888888899999999999999999999999999999999999888888898887764 699999999999999999
Q ss_pred CCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCC
Q 014122 307 GELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGH 385 (430)
Q Consensus 307 g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~ 385 (430)
|+||+||.|.+||||.++......|.++.. +... .|++|+||.+|++||+ +|+||+||+
T Consensus 244 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~-------~v~~i~~G~~hs~alt~~G~v~~wG~------------ 303 (406)
T 4d9s_A 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNS-------FISQISGGWRHTMALTSDGKLYGWGW------------ 303 (406)
T ss_dssp CCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTS-------CEEEEEECSSEEEEEETTSCEEEEEC------------
T ss_pred CCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCC-------CEEEEEecCCEEEEEcCCCeEEEeeC------------
Confidence 999999999999999999888888888874 2222 4666999999999999 999999999
Q ss_pred CCCCccCCcCCCCccccEEEEecCCeeEEEEeccCCceEEEEee
Q 014122 386 SSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 429 (430)
Q Consensus 386 N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~l~~~ 429 (430)
|.+||||.++......|++++.+.+.+|++|+||.+|+++|.++
T Consensus 304 n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 304 NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp CTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred CCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCC
Confidence 79999999999999999999988888999999999999999864
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-61 Score=471.49 Aligned_cols=325 Identities=31% Similarity=0.496 Sum_probs=294.0
Q ss_pred eeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCce--EEEEeCCcceEEEECCCCEEEE
Q 014122 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSL--KALACGGAHTLFLTETGCVYAT 95 (430)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I--~~i~~G~~~~~~lt~~G~vy~w 95 (430)
.+.++++|..|+++++ ++++||+||.|.+||||.+..++...|.+++.+.+..+ ++|+||..|+++|+++|+||+|
T Consensus 54 ~i~~i~~G~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVT--ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEETTEEEEEE--TTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeCCCeEEEEc--CCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 4567789999999998 89999999999999999999888999999998877644 7889999999999999999999
Q ss_pred ecCCCCccccCCCCCccccceEeccCCC-cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEecc
Q 014122 96 GLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (430)
Q Consensus 96 G~n~~g~lg~~~~~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~ 174 (430)
|.|.+||||.++ ......|.+++.++. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+++.+
T Consensus 132 G~n~~GqLG~g~-~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~--~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGN-RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSS-CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGG
T ss_pred eCCCCCcCCCCC-CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc--cccceEeccc
Confidence 999999999984 445578888887765 899999999999999999999999999999999988766 6778888888
Q ss_pred CCceEEEEecCC--ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEE
Q 014122 175 SGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252 (430)
Q Consensus 175 ~~~~i~~i~~g~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~ 252 (430)
.+.+|++|+||. .|+++|+++|+||+||.|.++|||.+.. .....|.++..+.+.+|++|+||.+|+++
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~---------~~~~~p~~v~~~~~~~v~~v~~G~~hs~a 279 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS---------DGCKVPMKIDSLTGLGVVKVECGSQFSVA 279 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC---------CCEEEEEECGGGTTSCEEEEEEETTEEEE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC---------CCccccEEecccCCCcEEEEeCCCCEEEE
Confidence 889999999995 8999999999999999999999999875 44567888888888889999999999999
Q ss_pred EecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC--CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCC
Q 014122 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHS 330 (430)
Q Consensus 253 lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~ 330 (430)
|+++|+||+||.|.++|||.+.......|+++..+. +|++|+||.+|+++|+++|+||+||.|.+||||.++......
T Consensus 280 lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~ 359 (389)
T 3kci_A 280 LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR 359 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEE
T ss_pred EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccC
Confidence 999999999999999999999988888999998775 599999999999999999999999999999999999988889
Q ss_pred CeeccCCCCCCCcccccceEEEEeecCceeEEEE
Q 014122 331 PERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS 364 (430)
Q Consensus 331 p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~ 364 (430)
|..|.. +...++.+ |+||.+|++|++
T Consensus 360 P~~v~~-~~~~~v~~-------va~G~~ht~al~ 385 (389)
T 3kci_A 360 PRLVAA-LQGKKVNR-------VACGSAHTLAWS 385 (389)
T ss_dssp EEECGG-GTTSCCCE-------EEEETTEEEEEC
T ss_pred cEEecc-cCCCCEEE-------EEecCCcEEEEe
Confidence 998874 34444555 999999999998
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=7.2e-60 Score=464.34 Aligned_cols=332 Identities=24% Similarity=0.382 Sum_probs=285.7
Q ss_pred eeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCC--CcccceeeCccCCCceEEEEeCCcceEEEECCCCEEE
Q 014122 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLE--SRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA 94 (430)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~--~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~ 94 (430)
..+.++++|..|+++++ ++++||+||.|.+||||.+... ....|.++.. + .+|++|+||..|+++|+++|+||+
T Consensus 59 ~~i~~va~G~~hs~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLS--KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECSSEEEEEE--TTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCeEEEEeCCCeEEEEc--CCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEE
Confidence 34578889999999998 8999999999999999998763 4667888854 2 379999999999999999999999
Q ss_pred Eec--CCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCc---------
Q 014122 95 TGL--NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK--------- 163 (430)
Q Consensus 95 wG~--n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~--------- 163 (430)
||. |.+||||.++.......|.++. ...+|++|+||..|+++|+++|+||+||.|.+||||.+.....
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~-~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEEC-CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEec-CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 999 9999999986665566788884 4559999999999999999999999999999999998754211
Q ss_pred ccccceEEecc-----CCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccC-
Q 014122 164 VIPIPTKVECL-----SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG- 237 (430)
Q Consensus 164 ~~~~p~~i~~~-----~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~- 237 (430)
....|..+... ...+|++|+||..|+++|+++|+||+||.|.++|||.+.. .....|..+..+.+
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~---------~~~~~P~~v~~l~~~ 284 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT---------ESCFIPQNLTSFKNS 284 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSC---------SCEEEEEECGGGCCT
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCC---------CcccccEEchhccCC
Confidence 12456555432 4468999999999999999999999999999999999875 34467888887765
Q ss_pred -ccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccC-CCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCC
Q 014122 238 -VKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQ-EGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 238 -~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~-~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n 315 (430)
.+|++|+||.+|+++|+++|+||+||.|.++|||.+ .......|++++.+.+|++|+||.+|+++|+++|+||+||.|
T Consensus 285 ~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 285 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCC
Confidence 579999999999999999999999999999999988 456677899999888999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCce
Q 014122 316 ENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKI 368 (430)
Q Consensus 316 ~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v 368 (430)
.+||||.++......|.+|..... . ..+|++|+||.+|+++|+ +|++
T Consensus 365 ~~gqLG~g~~~~~~~P~~v~~~~~----~--~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 365 TNYQLGTGQDEDAWSPVEMMGKQL----E--NRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTSTTCSSSCSCEEEEEECCSTTT----T--TEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCcccCeEcccccc----C--CCeEEEEeeCCCcEEEEEecCCC
Confidence 999999999888888988875211 1 135777999999999999 8864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-59 Score=458.87 Aligned_cols=323 Identities=23% Similarity=0.274 Sum_probs=271.6
Q ss_pred CCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 69 EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 69 ~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
+..++++|++|..|+++|+++|+||+||.|.+||||.++.......|.+++.++ +|++|+||..|+++|+++|+||+||
T Consensus 22 ~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~-~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP-DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp -------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS-SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC-CceEEeeCCCeEEEEeCCCeEEEeE
Confidence 345789999999999999999999999999999999997666778899888766 7999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeec--CCCCCCCCCCCCccccccccccc
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA--GGSGRLGHGQESSILGFLRSTSE 226 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~--n~~gqlg~~~~~~~~~~~~~~~~ 226 (430)
.|.+||||.+.........|.++... .+|++|+||..|+++|+++|+||+||. |.++|||.+.. ...
T Consensus 101 ~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~---------~~~ 169 (423)
T 3mvd_K 101 CNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID---------GNK 169 (423)
T ss_dssp CCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT---------BCE
T ss_pred CCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC---------CCC
Confidence 99999999988776556778877633 479999999999999999999999999 99999998765 223
Q ss_pred cCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCC-----------CCCCCeeecCC--CCeeeE
Q 014122 227 YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN-----------HARRPSLISKL--PYSEEV 293 (430)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~-----------~~~~p~~i~~~--~~i~~v 293 (430)
..|.. .+...+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|.++... .+|++|
T Consensus 170 ~~p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i 247 (423)
T 3mvd_K 170 RTPID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAI 247 (423)
T ss_dssp EEEEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEE
T ss_pred ceeeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEE
Confidence 34433 3455689999999999999999999999999999999987542 34577777644 369999
Q ss_pred EeeCCeEEEE-EcCCCEEEEeCCCCCCCCCCCCCCc--CCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceE
Q 014122 294 VCGGYHTCVL-TSGGELYTWGSNENGCLGIGSIDVL--HSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKIL 369 (430)
Q Consensus 294 ~~G~~~~~~l-~~~g~v~~wG~n~~gqLG~~~~~~~--~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~ 369 (430)
+||.+|++++ +++|+||+||.|.+||||.+..... ..|.++. . .+|++|+||.+|+++|+ +|+||
T Consensus 248 ~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~-------~~v~~ia~G~~ht~alt~~G~v~ 316 (423)
T 3mvd_K 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----L-------KDIRHIAGGQHHTVILTTDLKCS 316 (423)
T ss_dssp EEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----C-------CSEEEEEECSSEEEEEETTCCEE
T ss_pred EECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC----C-------CCeEEEEcccCeEEEEeCCCcEE
Confidence 9999999999 5899999999999999999654433 3344432 1 24667999999999999 99999
Q ss_pred EEecCCCCCccccCCCCCCCccCCcCCCC-ccccEEEEecCCeeEEEEeccCCceEEEEee
Q 014122 370 TWGWGGSHGTFSEDGHSSGGQLGHGNDVD-YIHPTIVNFGENVKALQVSCGFNHTGALLEY 429 (430)
Q Consensus 370 ~wG~~~~~~~~~~~~~N~~gqlG~~~~~~-~~~p~~v~~~~~~~v~~i~~G~~~t~~l~~~ 429 (430)
+||. |.+||||+++... ...|++++.+.+ +|++|+||.+|+++|.++
T Consensus 317 ~wG~------------n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 317 VVGR------------PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp EEEC------------CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred EEEC------------CCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC
Confidence 9999 7999999998765 568999988777 999999999999999864
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-57 Score=455.43 Aligned_cols=333 Identities=23% Similarity=0.371 Sum_probs=281.1
Q ss_pred ceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCC-----------------------cccceeeCc--c--
Q 014122 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-----------------------RWRPVVCSA--F-- 68 (430)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~-----------------------~~~p~~v~~--~-- 68 (430)
...+.++++|..|+++++ ++++||+||.|.+||||.+.... ...|.+++. +
T Consensus 66 ~~~i~~va~G~~Ht~alt--~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~ 143 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALD--EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143 (473)
T ss_dssp TTCEEEEEECSSEEEEEE--TTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHH
T ss_pred CCCEEEEEeCCCeEEEEe--cCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCc
Confidence 345678899999999998 89999999999999999987654 567888875 5
Q ss_pred --CCCceEEEEeCCcceEEEECCCCEEEEec--CCCCccccCC-CCCccccceEeccCCC-cEEEEEcCCCeEEEEEcCC
Q 014122 69 --EKHSLKALACGGAHTLFLTETGCVYATGL--NDFGQLGISE-NIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG 142 (430)
Q Consensus 69 --~~~~I~~i~~G~~~~~~lt~~G~vy~wG~--n~~g~lg~~~-~~~~~~~p~~i~~l~~-~i~~i~~G~~~~~~lt~~G 142 (430)
++.+|++|+||..|+++|+++|+||+||. |..||||... .......|.+++.+.. +|++|+||..|+++|+++|
T Consensus 144 ~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred ccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 36789999999999999999999999998 6889999843 3455678898887765 7999999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCc--ccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccc
Q 014122 143 ELYMWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (430)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~--~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~ 220 (430)
+||+||.|.+||||.+..... ....|..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~--- 297 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVED--- 297 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT---
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC---
Confidence 999999999999998765431 1345555532 57999999999999999999999999999999998874211
Q ss_pred cccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCC--------------CCCCCCeeecC
Q 014122 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG--------------NHARRPSLISK 286 (430)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~--------------~~~~~p~~i~~ 286 (430)
......|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|.+++.
T Consensus 298 --~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~ 375 (473)
T 3of7_A 298 --GALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375 (473)
T ss_dssp --TCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS
T ss_pred --CceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC
Confidence 12345688888777788999999999999999999999999999999997642 12356788887
Q ss_pred CCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCC-CCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE
Q 014122 287 LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGS-IDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS 364 (430)
Q Consensus 287 ~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~-~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~ 364 (430)
+.+|++|+||.+|+++|+++|+||+||.|.+||||.++ ......|.+|...... ..+|++|+||..|++++.
T Consensus 376 ~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~------~~~v~~v~cG~~~s~~~~ 448 (473)
T 3of7_A 376 VPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQ------DHNIILVGCGGQFSVSGG 448 (473)
T ss_dssp SCCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTT------TEEEEEEEECSSEEEEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccC------CCeEEEEeeCCCeEEEEE
Confidence 77999999999999999999999999999999999998 7778889999753111 135777999999999986
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3e-52 Score=387.50 Aligned_cols=270 Identities=26% Similarity=0.371 Sum_probs=223.8
Q ss_pred EEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEe
Q 014122 39 FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI 118 (430)
Q Consensus 39 ~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i 118 (430)
+||+||.|...++. |.+++.++ +|++|+||..|+++|+ +|+||+||.|.++|||.+ ..
T Consensus 3 ~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p---------~~- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP---------AA- 60 (282)
T ss_dssp EEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC---------GG-
T ss_pred EEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC---------cc-
Confidence 69999998754433 22333333 6999999999999998 999999999999999953 11
Q ss_pred ccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcE
Q 014122 119 SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (430)
Q Consensus 119 ~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v 198 (430)
...+|++|+||..|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++|+ +|+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~----------P~~~----~~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV----------PAEA----RSGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----------CGGG----SSSEEEEEEETTEEEEEE-TTEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----------Cccc----CCCeEEEECcCCEEEEEe-CCeE
Confidence 2238999999999999996 99999999999999985 2222 236999999999999999 9999
Q ss_pred EEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCC
Q 014122 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (430)
Q Consensus 199 ~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~ 278 (430)
|+||.|.++||+.... ...+|++|+||..|+++++ +|+||+||.+.++|++.
T Consensus 123 ~~wG~n~~gqlg~~~~---------------------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~------ 174 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPAE---------------------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV------ 174 (282)
T ss_dssp EEEECCTTSTTSCCGG---------------------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC------
T ss_pred EEecCCCCCcCCCCcc---------------------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC------
Confidence 9999999999974211 1136999999999999999 89999999999999973
Q ss_pred CCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCc
Q 014122 279 RRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWK 358 (430)
Q Consensus 279 ~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~ 358 (430)
|.++ ..+|++|+||.+|+++| ++|+||+||.|.+||||.. .+.. .+|++|+||.+
T Consensus 175 --p~~~--~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p--------~~~~------------~~v~~i~~G~~ 229 (282)
T 3qhy_B 175 --PAEA--QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVP--------TEAL------------SGVSAIASGEW 229 (282)
T ss_dssp --CGGG--GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCC--------GGGG------------SSCCEEEECSS
T ss_pred --ceec--CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCC--------cccC------------CCceEEEcCCC
Confidence 3333 35799999999999999 8999999999999999842 2111 23555999999
Q ss_pred eeEEEECCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEEecCCeeEEEEeccCCceEEEEee
Q 014122 359 HTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 429 (430)
Q Consensus 359 h~~~l~~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~~~t~~l~~~ 429 (430)
|++++++|+||+||. |+++|++.. + .|++|+||..|+++|.++
T Consensus 230 h~~al~~g~v~~wG~------------n~~gq~~v~--------------~--~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 230 YSLALKNGKVIAWGS------------SRTAPSSVQ--------------S--GVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp CEEEEETTEEEEEST------------TCCCCGGGS--------------S--CEEEEEECSSCEEEEEC-
T ss_pred EEEEEECCEEEEecC------------CCCccccCC--------------C--CcEEEEECcCeEEEEecC
Confidence 999999999999999 789998761 1 688999999999999975
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1e-47 Score=356.96 Aligned_cols=251 Identities=22% Similarity=0.317 Sum_probs=208.6
Q ss_pred eeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEec
Q 014122 18 IKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (430)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~ 97 (430)
.+.++++|..|+++++ +++||+||.|.+||||.. .+ ...+|++|+||..|+++|+ ||+||+||.
T Consensus 25 ~i~~ia~G~~h~~~l~---~G~v~~wG~n~~Gqlg~p--------~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK---GGKVLGWGANLNGQLTMP--------AA----TQSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSSEEEEEE---TTEEEEEECCSSSTTSCC--------GG----GGSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred CCcEEEeCCCeEEEEE---CCEEEEEeCCCCCCCCCC--------cc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 3567789999999883 799999999999999942 21 1236999999999999997 999999999
Q ss_pred CCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCc
Q 014122 98 NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (430)
Q Consensus 98 n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~ 177 (430)
|.++|||.+ .++ ..+|++|+||..|+++|+ +|+||+||.|.+||||... + ...
T Consensus 89 n~~Gqlg~P---------~~~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~------~~~ 141 (282)
T 3qhy_B 89 NEDGQTTVP---------AEA---RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E------AQS 141 (282)
T ss_dssp CTTSTTCCC---------GGG---SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G------GGS
T ss_pred CCCCCCCCC---------ccc---CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c------CCC
Confidence 999999853 222 248999999999999999 9999999999999997421 1 123
Q ss_pred eEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCC
Q 014122 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG 257 (430)
Q Consensus 178 ~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g 257 (430)
+|++|+||..|+++|+ +|+||+||.|.++||+.. ..+ ..+|++|+||.+|+++| ++|
T Consensus 142 ~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p-----------------~~~----~~~v~~i~~G~~hs~al-~~G 198 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP-----------------AEA----QSGVDDVAGGIFHSLAL-KDG 198 (282)
T ss_dssp SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC-----------------GGG----GSSEEEEEECSSEEEEE-ETT
T ss_pred CeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc-----------------eec----CCCeEEEEecCCEEEEE-ECC
Confidence 5999999999999999 899999999999999732 111 23799999999999999 899
Q ss_pred cEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCC
Q 014122 258 RVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGP 337 (430)
Q Consensus 258 ~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~ 337 (430)
+||+||.|.++|+|.+. +.+.+|++|+||.+|+++|+ +|+||+||.|.++|++. |
T Consensus 199 ~v~~wG~n~~gqlg~p~----------~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v--------~------ 253 (282)
T 3qhy_B 199 KVIAWGDNRYKQTTVPT----------EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV--------Q------ 253 (282)
T ss_dssp EEEEEECCTTSTTCCCG----------GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG--------S------
T ss_pred eEEEEECCCCCCCCCCc----------ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC--------C------
Confidence 99999999999998432 23457999999999999999 99999999999998853 1
Q ss_pred CCCCCcccccceEEEEeecCceeEEEE-CCceE
Q 014122 338 FSESPVDQICTSIVLVSCGWKHTAAIS-EGKIL 369 (430)
Q Consensus 338 ~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~ 369 (430)
.+|++|+||..|++||+ +++.+
T Consensus 254 ----------~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 ----------SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp ----------SCEEEEEECSSCEEEEEC-----
T ss_pred ----------CCcEEEEECcCeEEEEecCCCCC
Confidence 13666999999999999 77664
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.87 E-value=0.022 Score=54.92 Aligned_cols=220 Identities=9% Similarity=0.029 Sum_probs=129.5
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCC
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE 107 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~ 107 (430)
...+.+.+.++.|.+|-... + .....+.. ....|..++......+.-..||.|.+|-.....
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~-~----------~~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------ 204 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNT-L----------ECKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE------ 204 (435)
T ss_dssp SSEEEEEESSSCEEEEESSS-C----------CEEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESSSCC------
T ss_pred CCEEEEEeCCCeEEEEeCCC-C----------eEEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc------
Confidence 34555556788888885332 1 11111111 223688888866666677889999999654321
Q ss_pred CCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc
Q 014122 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (430)
Q Consensus 108 ~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 187 (430)
....+..-...|..++...+..+.-..+|.|..|-...... ..+.....-....|..++....
T Consensus 205 ------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~ 267 (435)
T 1p22_A 205 ------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDFDDK 267 (435)
T ss_dssp ------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSCEEEEEEETT
T ss_pred ------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCcEEEEEeCCC
Confidence 11222223347888888778888888999999996543111 1111111122335677777666
Q ss_pred eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCC
Q 014122 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAV 267 (430)
Q Consensus 188 ~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~ 267 (430)
..+.-..+|.|..|-..... ....+.. ....|..++......+.-..+|.|..|-....
T Consensus 268 ~l~s~~~dg~i~vwd~~~~~--------------------~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTSTCE--------------------FVRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEETTSEEEEEETTTCC--------------------EEEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCcCc--------------------EEEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 77777889999999543210 0001111 12246666666677777788999999965431
Q ss_pred CccccCCCCCCCCCeeecC-CCCeeeEEeeCCeEEEEEcCCCEEEEeC
Q 014122 268 DKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGS 314 (430)
Q Consensus 268 gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~~~~~~l~~~g~v~~wG~ 314 (430)
.. ...+.. ...|..++....+.+.-..||.|..|-.
T Consensus 327 ~~-----------~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 AC-----------LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CE-----------EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CE-----------EEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 11 111111 2246777776666677778999999964
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.54 E-value=0.07 Score=51.44 Aligned_cols=261 Identities=9% Similarity=0.031 Sum_probs=149.8
Q ss_pred eeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCcccc
Q 014122 26 ICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 26 ~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
....++.+.+.++.|.+|-....- ....+. .....|..++......+.-..||.|+.|-....
T Consensus 127 ~~g~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~----- 189 (445)
T 2ovr_B 127 FCGNRIVSGSDDNTLKVWSAVTGK-----------CLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG----- 189 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTCC-----------EEEECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-----
T ss_pred EcCCEEEEEECCCcEEEEECCCCc-----------EEEEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-----
Confidence 344556666788888888754311 011111 122357777776777777788999999954321
Q ss_pred CCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC
Q 014122 106 SENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g 185 (430)
.....+..-...|..+.......+.-+.+|.|+.|-....- +..........|..++..
T Consensus 190 -------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~--------------~~~~~~~~~~~v~~~~~~ 248 (445)
T 2ovr_B 190 -------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ--------------CLHVLMGHVAAVRCVQYD 248 (445)
T ss_dssp -------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC--------------EEEEEECCSSCEEEEEEC
T ss_pred -------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc--------------EEEEEcCCcccEEEEEEC
Confidence 11122333334677777777778888899999999654210 111111123346666666
Q ss_pred CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecC
Q 014122 186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDR 265 (430)
Q Consensus 186 ~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~ 265 (430)
....+.-..+|.|..|-.... .....+.. ....|..+.....+.+.-..+|.|+.|-..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETE--------------------TCLHTLQG-HTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGT--------------------EEEEEECC-CSSCEEEEEECSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCC--------------------cEeEEecC-CCCceEEEEECCCEEEEEeCCCeEEEEECC
Confidence 666777788999999953210 00011111 123577777777777777889999999654
Q ss_pred CCCccccCCCCCCCCCeeecC-CCCeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcc
Q 014122 266 AVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVD 344 (430)
Q Consensus 266 ~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~ 344 (430)
....+ ..+.. ...+..+.......++-..+|.|..|-...... ...+....
T Consensus 308 ~~~~~-----------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~------ 359 (445)
T 2ovr_B 308 TGNCI-----------HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-----------LQTLQGPN------ 359 (445)
T ss_dssp TCCEE-----------EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECSTT------
T ss_pred CCCEE-----------EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCC------
Confidence 31111 11111 124666666677777778899999997543111 11111100
Q ss_pred cccceEEEEeecCceeEEEE-CCceEEEec
Q 014122 345 QICTSIVLVSCGWKHTAAIS-EGKILTWGW 373 (430)
Q Consensus 345 ~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~ 373 (430)
.....|..++......++-. ||.|..|-.
T Consensus 360 ~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 360 KHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp SCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CCCCCEEEEEECCCEEEEEeCCCeEEEEEC
Confidence 00123555777666666666 999999976
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.40 E-value=0.1 Score=50.16 Aligned_cols=219 Identities=6% Similarity=-0.065 Sum_probs=128.3
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCC
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE 107 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~ 107 (430)
...+.+.+.++.|.+|-.... .....+. .....|..++......+.-..||.|+.|-.....
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------ 230 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETG-----------ECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ------ 230 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC------
T ss_pred CCEEEEEeCCCeEEEEECCcC-----------cEEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc------
Confidence 345555667888888854321 1111111 1223577888777777778889999999643211
Q ss_pred CCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc
Q 014122 108 NIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (430)
Q Consensus 108 ~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 187 (430)
....+..-...+..++......+.-..+|.|+.|-.... .+..........|..++....
T Consensus 231 ------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~ 290 (445)
T 2ovr_B 231 ------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGHTNRVYSLQFDGI 290 (445)
T ss_dssp ------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCCSSCEEEEEECSS
T ss_pred ------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCCCCceEEEEECCC
Confidence 112222233467777776777788888999999964321 111111112335777777666
Q ss_pred eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCC
Q 014122 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAV 267 (430)
Q Consensus 188 ~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~ 267 (430)
+.+.-..+|.|..|-...... ...+.. ....+..+.......+.-..+|.|..|-....
T Consensus 291 ~l~~~~~d~~i~i~d~~~~~~--------------------~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 291 HVVSGSLDTSIRVWDVETGNC--------------------IHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCE--------------------EEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCCCCE--------------------EEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 777778899999996432110 001111 11245566666667777788999999965331
Q ss_pred CccccCCCCCCCCCeeec----CCCCeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 268 DKMLFQEGNHARRPSLIS----KLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 268 gqlg~~~~~~~~~p~~i~----~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
.. ...+. ....|..++....+.+.-..||.|..|-...
T Consensus 350 ~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 350 QC-----------LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp CE-----------EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred cE-----------EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 11 11111 1224777777667777778899999997543
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.99 E-value=0.27 Score=47.11 Aligned_cols=227 Identities=10% Similarity=0.090 Sum_probs=134.9
Q ss_pred ceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCC
Q 014122 72 SLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 72 ~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~ 151 (430)
.|..++......+.-..||.|.+|-.... .....+..-...|..++......+.-..+|.|..|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 47777777777777788999999954321 112223333447888888777777778899999997542
Q ss_pred CCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcce
Q 014122 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRL 231 (430)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~ 231 (430)
. + ....+. .....|..++......+.-..+|.|..|-...... ..+..
T Consensus 203 ~-~------------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~ 250 (435)
T 1p22_A 203 G-E------------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD------------------ITLRR 250 (435)
T ss_dssp C-C------------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC------------------CEEEE
T ss_pred C-c------------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC------------------ceeee
Confidence 1 1 001111 12345777777777777778899999995432110 00001
Q ss_pred eecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEeeCCeEEEEEcCCCEE
Q 014122 232 IKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELY 310 (430)
Q Consensus 232 i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~~~~~~l~~~g~v~ 310 (430)
...-....|..++......+.-..+|.|..|-...... ...+.. ...|..+.......++-..+|.|.
T Consensus 251 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 251 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 319 (435)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred EecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 11111235777777677777778899999996533111 111221 224667777677777788899999
Q ss_pred EEeCCCCCCCCCCCCCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEec
Q 014122 311 TWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGW 373 (430)
Q Consensus 311 ~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~ 373 (430)
.|-......+ ..+.. .. ..|..++......+.-. ||.|.+|-.
T Consensus 320 iwd~~~~~~~-----------~~~~~--h~-------~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 320 LWDIECGACL-----------RVLEG--HE-------ELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEETTTCCEE-----------EEECC--CS-------SCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEECCCCCEE-----------EEEeC--Cc-------CcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 9975431110 11110 11 23455777555555555 999999975
No 17
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.79 E-value=0.31 Score=44.78 Aligned_cols=109 Identities=8% Similarity=-0.009 Sum_probs=61.7
Q ss_pred CceEEEEeCCc------ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC---CCeEEEEEcC
Q 014122 71 HSLKALACGGA------HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVD 141 (430)
Q Consensus 71 ~~I~~i~~G~~------~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G---~~~~~~lt~~ 141 (430)
..|..++.... ..+.-..||.|.+|-.... .....+......|..+... ....+.-..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 35766665544 4555677889999954321 1122233334467777653 4556667789
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccceEEe--ccCCceEEEEecC--CceeEEEEcCCcEEEeecC
Q 014122 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n 204 (430)
|.|+.|-..... ....+. ......|..++.. ....+....+|.|+.|-..
T Consensus 138 g~i~iwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 138 HALRLWNIQTDT-------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp SCEEEEETTTTE-------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred CeEEEEEeecCe-------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 999999653210 111111 1123356666654 3355556678999999653
No 18
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.26 E-value=0.79 Score=43.20 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=77.7
Q ss_pred EEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCC
Q 014122 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISEN 108 (430)
Q Consensus 31 ~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~ 108 (430)
+++...++.|++|-.... .....+.......|..|+...+ ..++-..+|.|..|-.....
T Consensus 106 l~~~~~d~~v~lw~~~~~-----------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 167 (401)
T 4aez_A 106 VVAVALERNVYVWNADSG-----------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------- 167 (401)
T ss_dssp EEEEEETTEEEEEETTTC-----------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred EEEEECCCeEEEeeCCCC-----------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------
Confidence 344557888999975431 1111222213345777776543 44555678999999543211
Q ss_pred CCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--C
Q 014122 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--F 186 (430)
Q Consensus 109 ~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~ 186 (430)
....+......|..++......+.-..+|.|+.|-....+. ....+. .....|..++.. .
T Consensus 168 -----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~-~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 168 -----KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH------------QIGTLQ-GHSSEVCGLAWRSDG 229 (401)
T ss_dssp -----EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC------------EEEEEE-CCSSCEEEEEECTTS
T ss_pred -----EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc------------eeeEEc-CCCCCeeEEEEcCCC
Confidence 12223333447777877777788888999999997542111 011111 122345555543 3
Q ss_pred ceeEEEEcCCcEEEeecC
Q 014122 187 EQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~n 204 (430)
...+.-..+|.|+.|-..
T Consensus 230 ~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred CEEEEEeCCCeEEEccCC
Confidence 345555678999999653
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.07 E-value=0.014 Score=50.67 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=59.5
Q ss_pred CceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecC
Q 014122 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 71 ~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n 150 (430)
.+|.+|+--..|.+++--|++|+.||.++.||+-++. -..+..++.+|.++++-+..-..+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-------------tagPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-------------HAGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------GGCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC-------------CcchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 3688899899999999999999999999999976541 223688999999999999999999999976
Q ss_pred CCCCC
Q 014122 151 SNGQL 155 (430)
Q Consensus 151 ~~gql 155 (430)
...-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 54333
No 20
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.87 Score=40.62 Aligned_cols=258 Identities=11% Similarity=0.072 Sum_probs=130.9
Q ss_pred eeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC--CcceEEEECCCCEEEEecCCCCcc
Q 014122 26 ICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQL 103 (430)
Q Consensus 26 ~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G--~~~~~~lt~~G~vy~wG~n~~g~l 103 (430)
.....+.+.+.++.|++|-.... .....+.. ....|..++.. ....+.-..+|.|..|-.....
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-- 92 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS-- 92 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT--
T ss_pred cCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC--
Confidence 44455666778999999975321 11111111 12346666554 3344555677888888543211
Q ss_pred ccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEe
Q 014122 104 GISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (430)
Q Consensus 104 g~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (430)
.......+......|..++......+.-..+|.|+.|-.. ... ..+. .....+..++
T Consensus 93 -------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~--------------~~~-~~~~-~~~~~v~~~~ 149 (313)
T 3odt_A 93 -------GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG--------------SLV-YNLQ-AHNASVWDAK 149 (313)
T ss_dssp -------TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT--------------EEE-EEEE-CCSSCEEEEE
T ss_pred -------CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC--------------cEE-Eecc-cCCCceeEEE
Confidence 0011122232334777777767778888899999999511 011 1111 1222344444
Q ss_pred c---CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC-CeEEEEecCCcE
Q 014122 184 L---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-LHSACIDENGRV 259 (430)
Q Consensus 184 ~---g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-~~~~~lt~~g~v 259 (430)
. .....+....+|.|+.|-... ....+.......|..++... ...++...+|.|
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i 207 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQNDK----------------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLI 207 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTE----------------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEE
T ss_pred EccCCCCEEEEEECCCCEEEEecCc----------------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeE
Confidence 3 455666677899999994110 00011111122344443321 225556788999
Q ss_pred EEEecCCCCccccCCCCCCCCCeeec-CCCCeeeEEeeCC-eEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCC
Q 014122 260 YIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY-HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGP 337 (430)
Q Consensus 260 y~wG~~~~gqlg~~~~~~~~~p~~i~-~~~~i~~v~~G~~-~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~ 337 (430)
+.|-...... ...+. ....|..++...+ ..++...+|.|+.|-..... ....+..
T Consensus 208 ~i~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~- 264 (313)
T 3odt_A 208 KLVDMHTGDV-----------LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS-----------LKQVITL- 264 (313)
T ss_dssp EEEETTTCCE-----------EEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC-----------EEEEEEC-
T ss_pred EEEECCchhh-----------hhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc-----------eeEEEec-
Confidence 9996543111 11111 1224666655433 45566778899998643311 0111111
Q ss_pred CCCCCcccccceEEEEeecCce-eEEEE-CCceEEEec
Q 014122 338 FSESPVDQICTSIVLVSCGWKH-TAAIS-EGKILTWGW 373 (430)
Q Consensus 338 ~~~~~i~~~~~~v~~i~~G~~h-~~~l~-~g~v~~wG~ 373 (430)
.. ..|..++...+. .++-. ||.|+.|=.
T Consensus 265 -~~-------~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 265 -PA-------ISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp -SS-------SCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred -cC-------ceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 11 134446655443 33444 999999976
No 21
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.40 E-value=1.4 Score=39.28 Aligned_cols=185 Identities=9% Similarity=0.004 Sum_probs=99.4
Q ss_pred CceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc---CCCeEEEEEcCCcEEEE
Q 014122 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYMW 147 (430)
Q Consensus 71 ~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~---G~~~~~~lt~~G~vy~~ 147 (430)
..|..++......+.-..+|.|+.|-. + .....+......+..+.. .....+.-..+|.|+.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 468888886777777888999999941 0 111222222335555443 56677778889999999
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc-eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccc
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~ 226 (430)
-.. .....+.......|..++...+ ..++...+|.|+.|-......
T Consensus 171 d~~---------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~------------------ 217 (313)
T 3odt_A 171 QND---------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV------------------ 217 (313)
T ss_dssp ETT---------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE------------------
T ss_pred ecC---------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh------------------
Confidence 521 1111122112334554443222 355567789999995432100
Q ss_pred cCcceeecccCccEEEEEeCCC-eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCC-CCeeeEEeeCC-eEEEE
Q 014122 227 YTPRLIKELEGVKVKIAAAGFL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCGGY-HTCVL 303 (430)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~-~~i~~v~~G~~-~~~~l 303 (430)
...+.. ....|..++.... ..++...+|.|+.|-..... ....+... ..|..++...+ ..++.
T Consensus 218 --~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ 283 (313)
T 3odt_A 218 --LRTYEG-HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS-----------LKQVITLPAISIWSVDCMSNGDIIVG 283 (313)
T ss_dssp --EEEEEC-CSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC-----------EEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred --hhhhhc-CCceEEEEEEecCCCEEEEecCCEEEEEECCCCc-----------eeEEEeccCceEEEEEEccCCCEEEE
Confidence 001111 1224666655433 45566788999999543211 01111111 24666654322 35567
Q ss_pred EcCCCEEEEeCCC
Q 014122 304 TSGGELYTWGSNE 316 (430)
Q Consensus 304 ~~~g~v~~wG~n~ 316 (430)
..+|.|+.|-...
T Consensus 284 ~~dg~i~iw~~~~ 296 (313)
T 3odt_A 284 SSDNLVRIFSQEK 296 (313)
T ss_dssp ETTSCEEEEESCG
T ss_pred eCCCcEEEEeCCC
Confidence 7889999997544
No 22
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.14 E-value=0.055 Score=47.04 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=58.4
Q ss_pred cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeec
Q 014122 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 124 ~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~ 203 (430)
.+.+|+....|..++--+++++.+|+++.||+-.....- ++.++.+|.++++-+..-+.|-.||+
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag---------------Pfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG---------------PYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC---------------CEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCcc---------------hHHhHhccCCeEEEEeceeeEEEecC
Confidence 677889999999999999999999999999986543322 47789999999999999999999998
Q ss_pred CCCCC
Q 014122 204 GGSGR 208 (430)
Q Consensus 204 n~~gq 208 (430)
.-..-
T Consensus 375 SPDNS 379 (400)
T 4gbf_A 375 SPDNS 379 (400)
T ss_dssp CTTST
T ss_pred CCCcc
Confidence 65433
No 23
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.87 E-value=2.1 Score=38.64 Aligned_cols=245 Identities=10% Similarity=-0.053 Sum_probs=122.0
Q ss_pred eccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC--Cc-ceEEEECCCCEEEEe
Q 014122 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GA-HTLFLTETGCVYATG 96 (430)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G--~~-~~~~lt~~G~vy~wG 96 (430)
..+++.....++.+.+.++.|++|-..... ....+..+. .....|..++.. .. ..+.-..+|.|+.|-
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 333444444556666688999999755321 001111111 222357766654 33 455667789999995
Q ss_pred c-CCCCccccCCCCCccccceEecc--CCCcEEEEEcC-CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEe
Q 014122 97 L-NDFGQLGISENIGYSLEPLRISG--LKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE 172 (430)
Q Consensus 97 ~-n~~g~lg~~~~~~~~~~p~~i~~--l~~~i~~i~~G-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~ 172 (430)
. .. + .+..+.. ....|..++.. ....+.-..+|.|+.|-......- .......+....
T Consensus 86 ~~~~-~------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~ 147 (342)
T 1yfq_A 86 LIGS-P------------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-----VIAVKNLNSNNT 147 (342)
T ss_dssp SSSS-S------------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----CEEEEESCSSSS
T ss_pred eccC-C------------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc-----cccccCCeeeEE
Confidence 4 22 1 1133333 33456555443 566777788999999964321000 000000000000
Q ss_pred ccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC---CCe
Q 014122 173 CLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG---FLH 249 (430)
Q Consensus 173 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~ 249 (430)
. ....|..++...+..++.+.+|.|+.|-....+.. ............|..++.. ...
T Consensus 148 ~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------------------~~~~~~~~~~~~i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD------------------NGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp S-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC------------------CCEEEECSCSSCEEEEEECSGGGCE
T ss_pred e-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc------------------cceeeecCCCCceeEEEECCCCCCE
Confidence 0 22357777777777666788999999965431100 0011111112245555554 345
Q ss_pred EEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC----------CCCeeeEEee--CCeEEEEEcCCCEEEEeCC
Q 014122 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK----------LPYSEEVVCG--GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 250 ~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~----------~~~i~~v~~G--~~~~~~l~~~g~v~~wG~n 315 (430)
.++-..+|.+..|-....+. .........+.. ...|..++.. ....+.-..+|.|+.|-..
T Consensus 209 l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 209 YACSSIDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEETTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEEecCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 55667889999886544210 000001111111 1145555543 3344556678889988643
No 24
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.72 E-value=2.4 Score=38.53 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=102.1
Q ss_pred CCCceEEEEeCCc-----ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcC
Q 014122 69 EKHSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVD 141 (430)
Q Consensus 69 ~~~~I~~i~~G~~-----~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~ 141 (430)
....|..|+.... ..+.-..||.|..|-....++ .....+..-...|..++.. ....+.-..+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 3457888888765 344456689999996543211 1112233234467666653 4466677789
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEec--CCc--eeEEEEcCCcEEEeecCCCCCCCCCCCCcc
Q 014122 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSI 217 (430)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~ 217 (430)
|.|..|-.... .+..+.. ....|..++. ..+ ..+.-..+|.|+.|-......
T Consensus 108 g~v~iwd~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------- 163 (368)
T 3mmy_A 108 KTAKMWDLSSN--------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--------- 163 (368)
T ss_dssp SEEEEEETTTT--------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC---------
T ss_pred CcEEEEEcCCC--------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE---------
Confidence 99999965421 1111111 2234666654 332 344556789999995421100
Q ss_pred ccccccccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeC
Q 014122 218 LGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG 297 (430)
Q Consensus 218 ~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~ 297 (430)
...+.. . ..+..+.......++.+.++.++.|-.......-.. ..........+..+....
T Consensus 164 -----------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 164 -----------MMVLQL-P-ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRR------IESPLKHQHRCVAIFKDK 224 (368)
T ss_dssp -----------SEEEEC-S-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEE------CCCSCSSCEEEEEEEECT
T ss_pred -----------EEEEec-C-CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhh------ccccccCCCceEEEcccC
Confidence 001111 1 145555555667778888999999965432111000 000000111233333322
Q ss_pred Ce----EEEEEcCCCEEEEeCCC
Q 014122 298 YH----TCVLTSGGELYTWGSNE 316 (430)
Q Consensus 298 ~~----~~~l~~~g~v~~wG~n~ 316 (430)
.. .++-..+|.|..|-...
T Consensus 225 ~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp TSCEEEEEEEETTSEEEEEESSC
T ss_pred CCCCCeEEEecCCCcEEEEecCC
Confidence 22 56677889999887654
No 25
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.66 E-value=3.2 Score=39.63 Aligned_cols=230 Identities=8% Similarity=-0.006 Sum_probs=115.8
Q ss_pred EEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC----CcceEEEECCCCEEEEecCCCCcccc
Q 014122 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G----~~~~~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
.+.+.+.++.|.+|-.... .....+.. ....|..++.. ....+.-..||.|..|-.........
T Consensus 175 ~l~s~s~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKG-----------CCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--
T ss_pred EEEEEeCCCCEEEEECCCC-----------cEEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccc
Confidence 4445556777777754321 11111111 22356666543 24456677889999997654332211
Q ss_pred CCCCC--------ccccc---eEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEecc
Q 014122 106 SENIG--------YSLEP---LRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (430)
Q Consensus 106 ~~~~~--------~~~~p---~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~ 174 (430)
..... ....| .....-...+..++......+.-..+|.|+.|-.... .+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~--------------~~~~~~~~ 308 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM--------------KCLYILSG 308 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECC
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEecC
Confidence 00000 00001 1112222367777777777888888999999965321 11111111
Q ss_pred CCceEEEEecCC--ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCCeEEE
Q 014122 175 SGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252 (430)
Q Consensus 175 ~~~~i~~i~~g~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~ 252 (430)
....|..++... ...+.-..+|.|+.|-..... ....+.. ....|..++....+.+.
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------------------~~~~~~~-h~~~v~~~~~~~~~l~s 367 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--------------------LMYTLQG-HTALVGLLRLSDKFLVS 367 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--------------------EEEEECC-CSSCEEEEEECSSEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------------------EEEEEeC-CCCcEEEEEEcCCEEEE
Confidence 123455555433 355566778999999542110 0011111 12357777777777788
Q ss_pred EecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 253 lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
...||.|..|-.....+.-. ........+..+..... .++...+|.|..|-...
T Consensus 368 ~s~dg~v~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 368 AAADGSIRGWDANDYSRKFS---------YHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp EETTSEEEEEETTTCCEEEE---------EECTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred EeCCCcEEEEECCCCceeee---------ecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 88999999996544211100 00111112334444333 44444588888887543
No 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.46 E-value=3.5 Score=39.30 Aligned_cols=234 Identities=7% Similarity=-0.010 Sum_probs=123.4
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc-ceEEEECCCCEEEEecCCCCcccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~-~~~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
...++.+.+.++.|.+|-.... .....+.. -...|..++...+ ..+.-..||.|..|-....
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~----- 193 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINK-----------KFLLQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG----- 193 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEECSTTEEEEEETTSCEEEEETTTT-----
T ss_pred CCCEEEEEcCCCcEEEEECCCC-----------cEEEEEeC-CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-----
Confidence 4456666678888888864321 11111111 2235777776544 4555677899999954321
Q ss_pred CCCCCccccceEeccCCCcEEEEEc----CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCc-------ccccceEEe--
Q 014122 106 SENIGYSLEPLRISGLKKEVVQIST----GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK-------VIPIPTKVE-- 172 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~~----G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~-------~~~~p~~i~-- 172 (430)
.....+..-...|..+.. .....+.-+.+|.|..|-............... ....|..+.
T Consensus 194 -------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 194 -------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp -------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred -------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 112222223345555543 235567777899999997654322211000000 000111111
Q ss_pred ccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC--CCeE
Q 014122 173 CLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHS 250 (430)
Q Consensus 173 ~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~ 250 (430)
.-....+..+.......+.-..+|.|..|-...... ...+.. ....|..++.. ....
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------------------~~~~~~-~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--------------------LYILSG-HTDRIYSTIYDHERKRC 325 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--------------------EEEECC-CSSCEEEEEEETTTTEE
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------------EEEecC-CCCCEEEEEEcCCCCEE
Confidence 112335666766666777778899999995421100 001111 11245555443 3455
Q ss_pred EEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 251 ACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 251 ~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
+.-..||.|+.|-...... ...+.. ...|..+.....+.+....||.|..|-...
T Consensus 326 ~sg~~dg~i~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENGEL-----------MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEETTSCEEEEETTTTEE-----------EEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEeCCCcEEEEECCCCcE-----------EEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 6667889999996433111 111111 224677777677777788999999997654
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.41 E-value=3.2 Score=38.61 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=71.5
Q ss_pred cceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCC
Q 014122 81 AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLG 158 (430)
Q Consensus 81 ~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~ 158 (430)
...++...+|.|+.|-..... ....+......|..++. .....+.-..+|.|+.|-.....
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----- 280 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEKT------------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN----- 280 (425)
T ss_dssp TEEEEECGGGCEEEEETTCSS------------CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----
T ss_pred CEEEEEcCCCeEEEEEcCCCc------------eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----
Confidence 345566778888888654311 11222222335555543 44566667778999999643210
Q ss_pred CCCCcccccceEEeccCCceEEEEecCCc-eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccC
Q 014122 159 KKAAKVIPIPTKVECLSGIFTKQAALGFE-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG 237 (430)
Q Consensus 159 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~ 237 (430)
....+. .....|..++...+ ..++...+|.|+.|-.... .+........
T Consensus 281 --------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------------~~~~~~~~~~ 330 (425)
T 1r5m_A 281 --------SQNCFY-GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN---------------------TLLALSIVDG 330 (425)
T ss_dssp --------CSEEEC-CCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT---------------------EEEEEEECTT
T ss_pred --------cceEec-CCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC---------------------cEeEecccCC
Confidence 111111 12234555554333 5566677999999954211 0111111112
Q ss_pred ccEEEEEeC--CCeEEEEecCCcEEEEecC
Q 014122 238 VKVKIAAAG--FLHSACIDENGRVYIFGDR 265 (430)
Q Consensus 238 ~~i~~i~~g--~~~~~~lt~~g~vy~wG~~ 265 (430)
..|..++.. ....++...+|.|+.|-..
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 245555544 3455556778999999643
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.18 E-value=3.6 Score=38.27 Aligned_cols=230 Identities=10% Similarity=-0.000 Sum_probs=106.0
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
...++.+...++.|++|- ..+. ....+.. ....|..++.... ..+....+|.|+.|-......+.
T Consensus 119 ~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp TSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 344555556777888884 1111 1111211 2235777776533 45556678999999654322211
Q ss_pred cCCCCCccc---cceEeccCCCcEEEEEc-CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEE
Q 014122 105 ISENIGYSL---EPLRISGLKKEVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (430)
Q Consensus 105 ~~~~~~~~~---~p~~i~~l~~~i~~i~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~ 180 (430)
.-....... .......-...+..+.. .....++...+|.|+.|-...... ...+. .....|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-------------~~~~~-~~~~~i~ 251 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-------------TGKLI-GHHGPIS 251 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-------------SEEEC-CCSSCEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-------------eeeec-cCCCceE
Confidence 000000000 00000000000222211 234566777888999987543110 01111 1122344
Q ss_pred EEec--CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCCC-eEEEEecCC
Q 014122 181 QAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL-HSACIDENG 257 (430)
Q Consensus 181 ~i~~--g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~g 257 (430)
.++. .....+.-..+|.|+.|-..... ....+.. ....|..+..... ..++...+|
T Consensus 252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~ 310 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDDGTLRIWHGGNGN--------------------SQNCFYG-HSQSIVSASWVGDDKVISCSMDG 310 (425)
T ss_dssp EEEEETTTTEEEEEETTSCEEEECSSSBS--------------------CSEEECC-CSSCEEEEEEETTTEEEEEETTS
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCc--------------------cceEecC-CCccEEEEEECCCCEEEEEeCCC
Confidence 4443 33345555678999999532110 0011111 1224555544333 555667889
Q ss_pred cEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEee--CCeEEEEEcCCCEEEEeCC
Q 014122 258 RVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 258 ~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G--~~~~~~l~~~g~v~~wG~n 315 (430)
.|+.|-......+ ..+.. ...+..++.. ....++-..+|.|+.|-..
T Consensus 311 ~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 311 SVRLWSLKQNTLL-----------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEETTTTEEE-----------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred cEEEEECCCCcEe-----------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 9999965331111 11111 2245555543 3345556678899998754
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.14 E-value=3 Score=37.33 Aligned_cols=231 Identities=9% Similarity=-0.019 Sum_probs=112.0
Q ss_pred EEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc-ceEEEECCCCEEEEecCCCCccccCCC
Q 014122 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISEN 108 (430)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~-~~~~lt~~G~vy~wG~n~~g~lg~~~~ 108 (430)
..+..++++++++.+......+.... .....+..... ....|..++...+ ..++...+|.|..|-......
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~------ 84 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGI-PRHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN------ 84 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTC-CSEEEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC------
T ss_pred eEEEECCCCCEEEeecCCCcEecccc-CCccccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc------
Confidence 33445588888888875544333222 11122222211 2335777776533 344445588899986543211
Q ss_pred CCccccceEec--cCCCcEEEEEcC--CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEec
Q 014122 109 IGYSLEPLRIS--GLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL 184 (430)
Q Consensus 109 ~~~~~~p~~i~--~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~ 184 (430)
......+. .....|..++.. ....++-..+|.|+.|-.... ..............|..++.
T Consensus 85 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 85 ---KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp ---CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEE
T ss_pred ---eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCceEEEEE
Confidence 00111111 223356666543 345566677899999965321 00011111112234555554
Q ss_pred C--CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC--CCeEEEEecCCcEE
Q 014122 185 G--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVY 260 (430)
Q Consensus 185 g--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy 260 (430)
. ....+.-..+|.|+.|-..... ....+.. ....|..++.. ....+....+|.|+
T Consensus 150 ~~~~~~l~~~~~dg~v~~~d~~~~~--------------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNIAVWDLHNQT--------------------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE--------------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCc--------------------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEE
Confidence 3 3455556778999999543210 0011111 12246555553 34555567889999
Q ss_pred EEecCCCCccccCCCCCCCCCeeecCCCCeeeEEee--CCeEEEEEcCCCEEEEeCC
Q 014122 261 IFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 261 ~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G--~~~~~~l~~~g~v~~wG~n 315 (430)
.|-......+ ..+.....+..++.. ....++-..+|.|+.|-..
T Consensus 209 ~~d~~~~~~~-----------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 209 SWDLREGRQL-----------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEETTTTEEE-----------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEECCCCceE-----------eeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 9965431111 111122234444432 3344455667888888654
No 30
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.69 E-value=9.8 Score=41.60 Aligned_cols=191 Identities=13% Similarity=0.154 Sum_probs=90.8
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc-CCCeEEEEEcCCcEEEEe
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-GYHHSSAITVDGELYMWG 148 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~-G~~~~~~lt~~G~vy~~G 148 (430)
.|..++...+ ..+.-..||.|..|-...... ..+......+..++. .....+....+|.|+.|-
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~-------------~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-------------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTEE-------------ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCce-------------EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 4555555433 344455788899996543211 111122335655554 345567778899999997
Q ss_pred cCCCCCCCCCCCCCcccccceEEeccCCceEEEEec--CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccc
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~ 226 (430)
.... + ....+.. ....|..++. .....+.-..+|.|+.|-......+
T Consensus 1072 ~~~~-~------------~~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~----------------- 1120 (1249)
T 3sfz_A 1072 VITG-R------------IERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL----------------- 1120 (1249)
T ss_dssp TTTT-C------------CCEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-----------------
T ss_pred CCCC-c------------eeEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-----------------
Confidence 5431 1 0011111 1112333332 2334555566888888854221110
Q ss_pred cCcceeecccCccEEEEEeCCC--eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeee-----cCCCCeeeEEeeCCe
Q 014122 227 YTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-----SKLPYSEEVVCGGYH 299 (430)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i-----~~~~~i~~v~~G~~~ 299 (430)
..+.. ....|..++...+ ..+.-..||.|+.|-......+. ...|... .....|..++...+.
T Consensus 1121 ---~~l~~-h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1121 ---HELKG-HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp ---BCCCC-CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTS
T ss_pred ---eeecc-CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCC
Confidence 00111 1124555554433 44445678888888654311111 1111111 111246666655444
Q ss_pred EEEEEcCCCEEEEeCCC
Q 014122 300 TCVLTSGGELYTWGSNE 316 (430)
Q Consensus 300 ~~~l~~~g~v~~wG~n~ 316 (430)
..+++.+|.|..|-...
T Consensus 1191 ~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1191 KTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp SCEEEESSSEEEBCSSS
T ss_pred CEEEECCCeEEEEECCC
Confidence 44455568888886543
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.11 E-value=4.6 Score=36.09 Aligned_cols=188 Identities=8% Similarity=-0.034 Sum_probs=96.2
Q ss_pred CceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEE
Q 014122 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYM 146 (430)
Q Consensus 71 ~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~ 146 (430)
..|..++...+. .++-..+|.|+.|-..... ......+......+..++. .....+.-+.+|.|+.
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 457777766443 4445678889999543211 0111122222335666554 3455666778899999
Q ss_pred EecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccc
Q 014122 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (430)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~ 224 (430)
|-.... .....+.. ....|..++.. ....+....+|.|+.|-......
T Consensus 168 ~d~~~~-------------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------- 217 (337)
T 1gxr_A 168 WDLHNQ-------------TLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---------------- 217 (337)
T ss_dssp EETTTT-------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------
T ss_pred EeCCCC-------------ceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce----------------
Confidence 965321 01111111 22346666553 33555566799999995432100
Q ss_pred cccCcceeecccCccEEEEEe--CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEee--CCe
Q 014122 225 SEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYH 299 (430)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G--~~~ 299 (430)
...+.. ...+..++. .....++-..+|.|+.|-..... ...+.. ...|..+... ...
T Consensus 218 ----~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 218 ----LQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp ----EEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEECCCSSCEEEEEECTTSSE
T ss_pred ----EeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEcCCccceeEEEECCCCCE
Confidence 001111 113444443 33445555678888888644311 111211 2246666554 344
Q ss_pred EEEEEcCCCEEEEeCCC
Q 014122 300 TCVLTSGGELYTWGSNE 316 (430)
Q Consensus 300 ~~~l~~~g~v~~wG~n~ 316 (430)
.+....+|.|+.|-...
T Consensus 280 l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEecCCCcEEEEECCC
Confidence 55566788899987543
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.03 E-value=5.2 Score=36.47 Aligned_cols=197 Identities=10% Similarity=0.049 Sum_probs=101.0
Q ss_pred ceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC----CCeEEEEEcCCcEE
Q 014122 72 SLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (430)
Q Consensus 72 ~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G----~~~~~~lt~~G~vy 145 (430)
.|..++...+. .+.-..||.|++|=.... .......+..-...|..++.. ....+.-..+|.|.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 57777766443 333346889999954310 111112233233467777653 46677777899999
Q ss_pred EEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC----ceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccc
Q 014122 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF----EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (430)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~ 221 (430)
.|-.... ...+..........|..++... ...+....+|.|..|-......
T Consensus 83 iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------- 137 (379)
T 3jrp_A 83 IWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------- 137 (379)
T ss_dssp EEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------------
T ss_pred EEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------------
Confidence 9965421 0011111111233566666553 3456667899999996532211
Q ss_pred ccccccCcceeecccCccEEEEEeC---------------CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC
Q 014122 222 RSTSEYTPRLIKELEGVKVKIAAAG---------------FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK 286 (430)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~ 286 (430)
..+..+.. ....|..++.. ....++...+|.|+.|-........ .....+..
T Consensus 138 -----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~ 204 (379)
T 3jrp_A 138 -----TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-------VLESTLEG 204 (379)
T ss_dssp -----CCEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-------EEEEEECC
T ss_pred -----eeeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-------eeEEEEec
Confidence 00111111 11235555443 3455566788999999543211000 00011111
Q ss_pred -CCCeeeEEee-----CCeEEEEEcCCCEEEEeCCC
Q 014122 287 -LPYSEEVVCG-----GYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 287 -~~~i~~v~~G-----~~~~~~l~~~g~v~~wG~n~ 316 (430)
...|..++.. ....+....+|.|..|-...
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 2246666554 33455566789999997543
No 33
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.92 E-value=2.2 Score=43.92 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=15.0
Q ss_pred eCCeEEEEEcCCCEEEEeCC
Q 014122 296 GGYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 296 G~~~~~~l~~~g~v~~wG~n 315 (430)
...|++++..+++||.+|-.
T Consensus 597 R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CBSCEEEEEETTEEEEECCB
T ss_pred cccceEEEeCCCEEEEECCc
Confidence 35677777766999999853
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.83 E-value=5.8 Score=36.55 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=93.9
Q ss_pred ceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc---CCCeEEEEEcCCcEEE
Q 014122 72 SLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYM 146 (430)
Q Consensus 72 ~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~---G~~~~~~lt~~G~vy~ 146 (430)
.|..|+...+. .+.-..||.|.+|-.... .....+..-...|..|+. +....+.-..+|.|..
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 57777766443 333457888999854321 111222222336666664 2334566678899999
Q ss_pred EecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC--ceeE-EEEcCCcEEEeecCCCCCCCCCCCCcccccccc
Q 014122 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSV-AVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (430)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~-~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~ 223 (430)
|-....-.+ ...........+..++... ...+ .-..++.|+.|-....
T Consensus 209 wd~~~~~~~------------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~----------------- 259 (357)
T 4g56_B 209 WDTRKPKPA------------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP----------------- 259 (357)
T ss_dssp CCTTSSSCB------------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----------------
T ss_pred EECCCCcee------------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-----------------
Confidence 954321100 0000011223455565432 2333 3467889999953210
Q ss_pred ccccCcceeecccCccEEEEEeCC---CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEee---C
Q 014122 224 TSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG---G 297 (430)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G---~ 297 (430)
.....+.. ....|..++... .+.+.-..||.|+.|-... +++- ..+.....|..|+.. .
T Consensus 260 ---~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~----------~~~~H~~~V~~vafsP~d~ 324 (357)
T 4g56_B 260 ---DSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVF----------RDLSHRDFVTGVAWSPLDH 324 (357)
T ss_dssp ---GGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEE----------EECCCSSCEEEEEECSSST
T ss_pred ---cEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEe----------EECCCCCCEEEEEEeCCCC
Confidence 00111111 123566666542 2334456789999995322 1110 111122347777653 2
Q ss_pred CeEEEEEcCCCEEEEeCCC
Q 014122 298 YHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 298 ~~~~~l~~~g~v~~wG~n~ 316 (430)
...+.-..||.|+.|=...
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp TEEEEEETTSCEEEEECC-
T ss_pred CEEEEEcCCCeEEEEECCC
Confidence 2333456789999997544
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=92.58 E-value=5.8 Score=35.91 Aligned_cols=191 Identities=8% Similarity=-0.076 Sum_probs=90.2
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC--cceEEEECCCCEEEEecCCCCccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~--~~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
...++.+.+.++.|++|-.... .....+.. ....|..++... ...+....||.|+.|-......
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 108 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-- 108 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 3445555567778888853321 11112221 223577777653 3455566789999995432111
Q ss_pred cCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcC-----CcEEEEecCCCCCCCCCCCCCcccccceEEe-ccCC
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVD-----GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSG 176 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~-----G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~-~~~~ 176 (430)
...+. .+..+..++. .....++...+ |.|+.|-.........-.... ......+. ....
T Consensus 109 ----------~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 109 ----------VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS--EEPIHKIITHEGL 175 (369)
T ss_dssp ----------EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC--SSCSEEEECCTTC
T ss_pred ----------EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc--cceeeeccCCcCc
Confidence 11111 3335555544 34455555666 889888754332211000000 00001111 1111
Q ss_pred ceEEEEec--CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC--CCeEEE
Q 014122 177 IFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSAC 252 (430)
Q Consensus 177 ~~i~~i~~--g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~ 252 (430)
..+..++. .....++-..+|.|+.|-.....+ ....+.. ....|..++.. ....+.
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-------------------YVDSIDL-HEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-------------------EEEEEEC-CSSCEEEEEECTTSSEEEE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-------------------eEEEEec-CCCceeEEEECCCCCEEEE
Confidence 13444443 333555567789999995422100 0011111 12246555543 334455
Q ss_pred EecCCcEEEEec
Q 014122 253 IDENGRVYIFGD 264 (430)
Q Consensus 253 lt~~g~vy~wG~ 264 (430)
...+|.|+.|-.
T Consensus 236 ~~~d~~i~v~d~ 247 (369)
T 3zwl_B 236 SSRDTNSFLVDV 247 (369)
T ss_dssp EETTSEEEEEET
T ss_pred ecCCceEEEEEC
Confidence 567889999864
No 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.50 E-value=6.5 Score=36.27 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=58.9
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc---------ceEEEECCCCEEEEecCC
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---------HTLFLTETGCVYATGLND 99 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~---------~~~~lt~~G~vy~wG~n~ 99 (430)
.++.+.+.++.|++|-...... .........+. .....|..++.... ..+.-..||.|++|-...
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence 6677777899999998654210 00111112222 12335777765543 344456789999996432
Q ss_pred CCccccCCCCCccccceEeccC-----CCcEEEEEcC------CCe-EEEEEcCCcEEEEecCC
Q 014122 100 FGQLGISENIGYSLEPLRISGL-----KKEVVQISTG------YHH-SSAITVDGELYMWGKNS 151 (430)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~l-----~~~i~~i~~G------~~~-~~~lt~~G~vy~~G~n~ 151 (430)
... ........+... ...|..++.. ... .+.-..+|.|+.|-...
T Consensus 101 ~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 101 EDE-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp CTT-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred Ccc-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 111 000112233323 2456666544 445 56667899999997654
No 37
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.23 E-value=7 Score=36.01 Aligned_cols=252 Identities=8% Similarity=-0.037 Sum_probs=115.9
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeC----ccCCCceEEEEeCC---cceEEEECCCCEEEEecCC
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCS----AFEKHSLKALACGG---AHTLFLTETGCVYATGLND 99 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~----~~~~~~I~~i~~G~---~~~~~lt~~G~vy~wG~n~ 99 (430)
...++.+.+.++.|.+|-.........-. ......+. ......|..++... ...+.-..+|.|..|-...
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYT---CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEE---ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEe---ccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC
Confidence 44556666678888888655422111100 00000000 01234678887643 3455567789999996432
Q ss_pred CCccccCCCCCccccceEeccCCCcEEEEEcCC-----CeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEecc
Q 014122 100 FGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL 174 (430)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~ 174 (430)
. .+......+..+..+.... ...++-..+|.|+.|-...... ...+. .
T Consensus 132 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-------------~~~~~-~ 184 (408)
T 4a11_B 132 L-------------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-------------SHILQ-G 184 (408)
T ss_dssp T-------------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-------------CEEEC-C
T ss_pred C-------------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-------------eeeec-C
Confidence 1 1111112334444444322 2566677889999997542111 11111 1
Q ss_pred CCceEEEEecCCce---eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC--CCe
Q 014122 175 SGIFTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLH 249 (430)
Q Consensus 175 ~~~~i~~i~~g~~~---~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~ 249 (430)
....|..++...+. .+.-..+|.|+.|-.......-..... ........+..........|..++.. ..+
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ-----HNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT-----TTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc-----cccccceeeccccccccCceeEEEEcCCCCE
Confidence 22346666544332 445677999999965432210000000 00000000001111112246666654 345
Q ss_pred EEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 250 SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 250 ~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
.+....+|.|+.|-.......-...... .........+..........++...++.|+.|-...
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKV---CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCC---CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred EEEecCCCeEEEEECCCCccceeccccc---cccccccceeEEecCCCceEEEEecCCEEEEEECcC
Confidence 6666789999999754422111000000 000000001111122344556667789999997543
No 38
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.59 E-value=13 Score=37.69 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=16.2
Q ss_pred CCeEEEEEcCCCEEEEeCCCCC
Q 014122 297 GYHTCVLTSGGELYTWGSNENG 318 (430)
Q Consensus 297 ~~~~~~l~~~g~v~~wG~n~~g 318 (430)
..|++++..+|+||..|-...+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBC
T ss_pred ccCCeEECCCCCEEEECCcccC
Confidence 4577777779999999965443
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.32 E-value=15 Score=37.85 Aligned_cols=229 Identities=11% Similarity=0.045 Sum_probs=115.6
Q ss_pred eccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC--cceEEEECCCCEEEEec
Q 014122 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGL 97 (430)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~--~~~~~lt~~G~vy~wG~ 97 (430)
..++......++.+...++.|.+|-... | .....+.. ....|..++... ...++-..+|.|++|-.
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~-~----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYET-Q----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTT-T----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCC-C----------ceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 3444444555666666788888886432 1 11111211 223566665543 34555677899999965
Q ss_pred CCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccC
Q 014122 98 NDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS 175 (430)
Q Consensus 98 n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~ 175 (430)
.... ....+......|..++.. ....+.-+.+|.|..|-..... .....+. ..
T Consensus 85 ~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~-~~ 139 (814)
T 3mkq_A 85 NTGE------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFE-GH 139 (814)
T ss_dssp TTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEE-CC
T ss_pred CCCc------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEc-CC
Confidence 4321 122223233456666543 3356666788999999653210 1111111 12
Q ss_pred CceEEEEecCC---ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEe----CCC
Q 014122 176 GIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA----GFL 248 (430)
Q Consensus 176 ~~~i~~i~~g~---~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~----g~~ 248 (430)
...|..++... ...+....+|.|..|-...... ...+.......+..++. ...
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFTLTTGQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--------------------SEEEECCCTTCCCEEEECCSTTCC
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------------eeEEecCCCCCEEEEEEEECCCCC
Confidence 23466666533 3455556789999996422100 01111111112333332 344
Q ss_pred eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEeeC--CeEEEEEcCCCEEEEeCCC
Q 014122 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGG--YHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 249 ~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~--~~~~~l~~~g~v~~wG~n~ 316 (430)
..+....+|.|+.|-..... ....+.. ...|..++... ...+....+|.|+.|-...
T Consensus 200 ~l~~~~~dg~i~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 200 YMITASDDLTIKIWDYQTKS-----------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEEECTTSEEEEEETTTTE-----------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCEEEEEECCCCc-----------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 55566788999999643211 1112221 22455555433 3455566789999996543
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.25 E-value=7.9 Score=34.65 Aligned_cols=223 Identities=10% Similarity=0.023 Sum_probs=102.0
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccC
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGIS 106 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~ 106 (430)
.++.+.+.|+.|.+|=..... .....|......-...|..++...+. .+.-..||.|+.|-......
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~---- 120 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---- 120 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----
T ss_pred CEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce----
Confidence 466677788999999654311 11112222111112357766655433 33445678888875433211
Q ss_pred CCCCccccceEeccCCC--cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEE--
Q 014122 107 ENIGYSLEPLRISGLKK--EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA-- 182 (430)
Q Consensus 107 ~~~~~~~~p~~i~~l~~--~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i-- 182 (430)
......... ............+.-..+|.+..|-..... .+..........+..+
T Consensus 121 --------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-------------~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 121 --------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-------------KYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp --------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-------------EEEECSSSCSSCEEEEEE
T ss_pred --------eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-------------eEEEEeccccCcccceEE
Confidence 111111111 222233344455556778888888532211 0000000011223333
Q ss_pred ecCCce--eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC--CeEEEEecCCc
Q 014122 183 ALGFEQ--SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGR 258 (430)
Q Consensus 183 ~~g~~~--~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~ 258 (430)
+..... .+.-..++.|..|-..... ....+.. ....|..++... ...+.-..||.
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~--------------------~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANCK--------------------LKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTTE--------------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCCc--------------------eeeEecC-CCCcEEEEEECCCCCEEEEEeCCCe
Confidence 222222 2333567888888542110 0001111 112465555443 34444567889
Q ss_pred EEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEee-CCeEEEEEcCCCEEEEeCC
Q 014122 259 VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 259 vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G-~~~~~~l~~~g~v~~wG~n 315 (430)
|..|-.....++ ..+.....+..+... ..+.++...++.|..|-..
T Consensus 239 i~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 239 AMLWDLNEGKHL-----------YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp EEEEETTTTEEE-----------EEEECSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred EEEEEeccCcee-----------eeecCCceEEeeecCCCCceeeccCCCEEEEEECC
Confidence 999865432211 112222234444432 3345556678888888643
No 41
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=91.19 E-value=15 Score=37.81 Aligned_cols=241 Identities=10% Similarity=-0.012 Sum_probs=120.3
Q ss_pred ccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC----CcceEEEECCCCEEEEe
Q 014122 21 GSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG----GAHTLFLTETGCVYATG 96 (430)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G----~~~~~~lt~~G~vy~wG 96 (430)
.++......++.+.+.++.|.+|-.... .......+.. ....|..++.. ....+.-..||.|++|-
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 3344444556666678999999964310 0011111111 12368888765 34455667889999996
Q ss_pred cCCCCccccCCCCCccccceEeccCCCcEEEEEcC----CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEe
Q 014122 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE 172 (430)
Q Consensus 97 ~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~ 172 (430)
..... ......+......|..++.. ....+.-+.+|.|+.|-...... ..+..+.
T Consensus 84 ~~~~~----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----------~~~~~~~ 142 (753)
T 3jro_A 84 EENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIID 142 (753)
T ss_dssp EETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----------CCCEEEE
T ss_pred CCCCc----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----------cceeEee
Confidence 43210 01112222233467777654 45677778899999997543211 0111111
Q ss_pred ccCCceEEEEecC---------------CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccC
Q 014122 173 CLSGIFTKQAALG---------------FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG 237 (430)
Q Consensus 173 ~~~~~~i~~i~~g---------------~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~ 237 (430)
.....|..++.. ....+.-..+|.|..|-..... ....+........
T Consensus 143 -~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----------------~~~~~~~~~~~h~ 204 (753)
T 3jro_A 143 -AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------------QTYVLESTLEGHS 204 (753)
T ss_dssp -CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----------------TEEEEEEEECCCS
T ss_pred -cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----------------ccceeeeeecCCC
Confidence 112235555443 2345556779999999542210 0001111001112
Q ss_pred ccEEEEEeCC-----CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeec-CCCCeeeEEee--CCeEEEEEcCCCE
Q 014122 238 VKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCG--GYHTCVLTSGGEL 309 (430)
Q Consensus 238 ~~i~~i~~g~-----~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~-~~~~i~~v~~G--~~~~~~l~~~g~v 309 (430)
..|..++... ...+....+|.|+.|-....... ......... ....|..++.. ..+.+.-..||.|
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 3576776653 34555678899999965442110 000000000 11134444432 3344555678999
Q ss_pred EEEeCCC
Q 014122 310 YTWGSNE 316 (430)
Q Consensus 310 ~~wG~n~ 316 (430)
+.|-...
T Consensus 279 ~vwd~~~ 285 (753)
T 3jro_A 279 TLWKENL 285 (753)
T ss_dssp ECCBCCS
T ss_pred EEEecCC
Confidence 9997654
No 42
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=90.71 E-value=11 Score=35.15 Aligned_cols=143 Identities=10% Similarity=-0.029 Sum_probs=75.8
Q ss_pred eccCCcEEEEEEcCCCCccCCCCCCCcccceeeCcc--CCCceEEEEeCC---cceEEEECCCCEEEEecCCCCccccCC
Q 014122 33 STLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAF--EKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISE 107 (430)
Q Consensus 33 ~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~--~~~~I~~i~~G~---~~~~~lt~~G~vy~wG~n~~g~lg~~~ 107 (430)
..+.++.|++|=....|++. ..+..+ -...|..++... ...+.-..||.|.+|-........
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--- 118 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVD----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--- 118 (402)
T ss_dssp CCSSSCCEEEEETTCCEECC----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---
T ss_pred EEcCCCEEEEEECccCCCCC----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---
Confidence 34578888888766544431 111111 123577777654 344445678999999654432110
Q ss_pred CCCccccceEeccCCCcEEEEEcCC---CeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEe-ccCCceEEEEe
Q 014122 108 NIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAA 183 (430)
Q Consensus 108 ~~~~~~~p~~i~~l~~~i~~i~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~-~~~~~~i~~i~ 183 (430)
........+..-...|..++... ...+.-..+|.|+.|-.... + ....+. ......|..++
T Consensus 119 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~------------~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 119 --PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-A------------AVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp --CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-E------------EEEEECTTTCCSCEEEEE
T ss_pred --ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-C------------ccEEEecCCCCCceEEEE
Confidence 00011223333344677776543 35566678999999965421 0 011110 11223466665
Q ss_pred cC--CceeEEEEcCCcEEEeec
Q 014122 184 LG--FEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 184 ~g--~~~~~~lt~~g~v~~wG~ 203 (430)
.. ....+.-..+|.|+.|-.
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCcEEEEeC
Confidence 53 334555567899999954
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.61 E-value=11 Score=41.18 Aligned_cols=223 Identities=11% Similarity=0.046 Sum_probs=104.5
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC-cceEEEECCCCEEEEecCCCCcccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG-AHTLFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~-~~~~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
...++.+.+.++.|.+|-.... . ...+. .....|..++... ...+....+|.|+.|-.....
T Consensus 1014 dg~~l~s~~~dg~i~vwd~~~~-~-----------~~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---- 1076 (1249)
T 3sfz_A 1014 DGKTLISSSEDSVIQVWNWQTG-D-----------YVFLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---- 1076 (1249)
T ss_dssp SSSCEEEECSSSBEEEEETTTT-E-----------EECCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC----
T ss_pred CCCEEEEEcCCCEEEEEECCCC-c-----------eEEEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc----
Confidence 3345555667888888864431 1 11111 1123466666543 345566778999999653321
Q ss_pred CCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEe
Q 014122 106 SENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (430)
....+..-...|..++ --....+.-..+|.|+.|-......+. .+. .....|..++
T Consensus 1077 --------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~-------------~l~-~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1077 --------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH-------------ELK-GHNGCVRCSA 1134 (1249)
T ss_dssp --------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB-------------CCC-CCSSCEEEEE
T ss_pred --------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee-------------eec-cCCCcEEEEE
Confidence 1112221222333333 333455666778888888643221110 010 0122355555
Q ss_pred cCCc--eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceee---cccCccEEEEEeCCCeEEEEecCCc
Q 014122 184 LGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK---ELEGVKVKIAAAGFLHSACIDENGR 258 (430)
Q Consensus 184 ~g~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~---~~~~~~i~~i~~g~~~~~~lt~~g~ 258 (430)
...+ ..+.-..+|.|+.|-......+.. ..|.... ......|..++...+..++++.+|.
T Consensus 1135 ~s~dg~~lat~~~dg~i~vwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~ 1199 (1249)
T 3sfz_A 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHS---------------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY 1199 (1249)
T ss_dssp ECSSSSEEEEEETTSCCCEEESSSSCCCCC---------------CCCCC-------CCSCCCEEEECTTSSCEEEESSS
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEE---------------eccccccccccccCceEEEEEECCCCCEEEECCCe
Confidence 4333 344446788999996543221111 0111100 0111235555555444444455688
Q ss_pred EEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEE--eeCCeEEEEEcCCCEEEEe
Q 014122 259 VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV--CGGYHTCVLTSGGELYTWG 313 (430)
Q Consensus 259 vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~--~G~~~~~~l~~~g~v~~wG 313 (430)
|..|-......+.. . ......|..++ ......++.+.+|.|+.|-
T Consensus 1200 v~vwd~~~g~~~~~--------~--~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQT--------F--YTNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp EEEBCSSSCBCCCC--------C--CCSSCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred EEEEECCCCceeee--------e--eccCCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence 88885433111110 0 00111233333 3344566677889999885
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.47 E-value=11 Score=35.05 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=43.8
Q ss_pred CceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEe
Q 014122 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWG 148 (430)
Q Consensus 71 ~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G 148 (430)
..|..++......+.-..+|.|+.|-..... .....+......|..++. .....+.-+.+|.|+.|-
T Consensus 177 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 177 ARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 4688888877777777889999999653211 112222223346666655 344566667889999997
Q ss_pred cC
Q 014122 149 KN 150 (430)
Q Consensus 149 ~n 150 (430)
..
T Consensus 246 ~~ 247 (401)
T 4aez_A 246 AR 247 (401)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=90.47 E-value=11 Score=35.01 Aligned_cols=139 Identities=10% Similarity=0.040 Sum_probs=71.0
Q ss_pred cceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEE---eCCcceEEEECCCCEEEEecCCC
Q 014122 24 LGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA---CGGAHTLFLTETGCVYATGLNDF 100 (430)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~---~G~~~~~~lt~~G~vy~wG~n~~ 100 (430)
+.....++.+.+.++.+++|-....-. ...+....+..+. ......+.-..+|.|.+|-....
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDG--------------SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEET--------------TTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred eeecCCeEEEEEcCCcEEEEEecccce--------------eeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence 334444555566788888886443110 0111111233332 22334455567888999843211
Q ss_pred CccccCCCCCccccceEe-ccCCCcEEEEEcC--CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCc
Q 014122 101 GQLGISENIGYSLEPLRI-SGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (430)
Q Consensus 101 g~lg~~~~~~~~~~p~~i-~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~ 177 (430)
.+... ..-...|..++.. ....+.-..+|.|+.|-..... ....+.. ...
T Consensus 130 -------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-------------~~~~~~~-h~~ 182 (420)
T 3vl1_A 130 -------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-------------NPRTLIG-HRA 182 (420)
T ss_dssp -------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------------CCEEEEC-CSS
T ss_pred -------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-------------CceEEcC-CCC
Confidence 11222 2233467666653 3456666788999999754311 1111211 122
Q ss_pred eEEEEecC--CceeEEEEcCCcEEEeec
Q 014122 178 FTKQAALG--FEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 178 ~i~~i~~g--~~~~~~lt~~g~v~~wG~ 203 (430)
.|..++.. ....+.-..+|.|..|-.
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 35555443 334555567899999964
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.40 E-value=18 Score=37.22 Aligned_cols=187 Identities=10% Similarity=-0.049 Sum_probs=94.2
Q ss_pred ceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~ 147 (430)
.|..|+...+. .++-..+|.|..|-.... .....+...+..|..++ ......++-+++|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 57777666443 334456888999954321 11122222333455544 345567777889999999
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc--eeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccc
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~ 225 (430)
-..... ....+.. ....|..++...+ ..+.-..+|.|..|-.....
T Consensus 83 ~~~~~~-------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------------ 130 (814)
T 3mkq_A 83 NYNTGE-------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------------ 130 (814)
T ss_dssp ETTTCC-------------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------------
T ss_pred ECCCCc-------------EEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------------
Confidence 754311 1111111 1234555554433 45555678999999542110
Q ss_pred ccCcceeecccCccEEEEEeCC---CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-C-CCeeeEEe----e
Q 014122 226 EYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-L-PYSEEVVC----G 296 (430)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~-~~i~~v~~----G 296 (430)
.....+.. ....|..++... ...+....+|.|+.|-..... ....+.. . ..+..+.. .
T Consensus 131 -~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 131 -ALEQTFEG-HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp -EEEEEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTT
T ss_pred -eEEEEEcC-CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCC
Confidence 01111111 122466665532 344555778999999643211 1111111 1 23444443 2
Q ss_pred CCeEEEEEcCCCEEEEeCC
Q 014122 297 GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 297 ~~~~~~l~~~g~v~~wG~n 315 (430)
....++...+|.|..|-..
T Consensus 198 ~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 198 KPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp CCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCEEEEEECC
Confidence 3345556678889998643
No 47
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.68 E-value=12 Score=34.32 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=73.5
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccC----CCceEEEEeC------Ccc-eEEEECCCCEEEEec
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE----KHSLKALACG------GAH-TLFLTETGCVYATGL 97 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~----~~~I~~i~~G------~~~-~~~lt~~G~vy~wG~ 97 (430)
.++.+.+.++.|++|=...... ........+.... ...|..++.. ... .+.-..+|.|+.|-.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cEEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 5566666788888886443110 0011122222221 2457777665 333 445568899999965
Q ss_pred CCCCccccCCCCCccccce-Eec-------cCCCcEEEEEcCCC-eEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccc
Q 014122 98 NDFGQLGISENIGYSLEPL-RIS-------GLKKEVVQISTGYH-HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (430)
Q Consensus 98 n~~g~lg~~~~~~~~~~p~-~i~-------~l~~~i~~i~~G~~-~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p 168 (430)
.....-... ......|. .+. .-...|..++...+ ..+.-..+|.|+.|-.... ...
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~ 220 (397)
T 1sq9_A 156 HPFADESNS--LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-------------RPL 220 (397)
T ss_dssp ESSSSHHHH--TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-------------EEE
T ss_pred Ccccccccc--ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-------------cee
Confidence 431000000 00111111 221 11234555554322 5555567899999965321 011
Q ss_pred eEEecc--C---CceEEEEecC--CceeEEEEcC---CcEEEeecC
Q 014122 169 TKVECL--S---GIFTKQAALG--FEQSVAVTGG---GKVLSWGAG 204 (430)
Q Consensus 169 ~~i~~~--~---~~~i~~i~~g--~~~~~~lt~~---g~v~~wG~n 204 (430)
..+... . ...|..++.. ..+.++-..+ |.|+.|-..
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 111110 1 3346666653 3344455567 899999653
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=89.30 E-value=12 Score=33.83 Aligned_cols=235 Identities=10% Similarity=0.046 Sum_probs=118.2
Q ss_pred cccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccce-eeCccCCCceEEEEeC----CcceEEEECCCCEEEEe
Q 014122 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV-VCSAFEKHSLKALACG----GAHTLFLTETGCVYATG 96 (430)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~-~v~~~~~~~I~~i~~G----~~~~~~lt~~G~vy~wG 96 (430)
+++.....++.+...++.|++|=... ....+. .+.. ....|..++.. ....+.-..||.|.+|-
T Consensus 17 ~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 17 AVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEET----------TEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEEECCCcEEEEecCC----------CcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 33444455566666788888886432 011111 1111 22357788765 34555667789999995
Q ss_pred cCCCCccccCCCCCccccceEeccCCCcEEEEEcC----CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEe
Q 014122 97 LNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE 172 (430)
Q Consensus 97 ~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~ 172 (430)
..... ......+......|..++.. ....+....+|.|..|-...... ..+..+.
T Consensus 86 ~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------~~~~~~~ 144 (379)
T 3jrp_A 86 EENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----------TSPIIID 144 (379)
T ss_dssp EETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----------CCEEEEE
T ss_pred cCCCc----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----------eeeEEec
Confidence 43210 01112222223467776654 34677778899999997643211 1111111
Q ss_pred ccCCceEEEEecC---------------CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcc-eeeccc
Q 014122 173 CLSGIFTKQAALG---------------FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR-LIKELE 236 (430)
Q Consensus 173 ~~~~~~i~~i~~g---------------~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~-~i~~~~ 236 (430)
.....|..++.. ....+.-..+|.|+.|-..... ....+. .+.. .
T Consensus 145 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~-h 205 (379)
T 3jrp_A 145 -AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------------QTYVLESTLEG-H 205 (379)
T ss_dssp -CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT-----------------TEEEEEEEECC-C
T ss_pred -CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-----------------cceeeEEEEec-c
Confidence 122235555543 3455566779999999542110 000000 1111 1
Q ss_pred CccEEEEEeCC-----CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeec---CCCCeeeEEee--CCeEEEEEcC
Q 014122 237 GVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS---KLPYSEEVVCG--GYHTCVLTSG 306 (430)
Q Consensus 237 ~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~---~~~~i~~v~~G--~~~~~~l~~~ 306 (430)
...|..++... ...+....+|.|..|-....... .....+. ....|..++.. ....++...+
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 22466666553 34555678899999965431100 0000111 11235555443 3344556678
Q ss_pred CCEEEEeCC
Q 014122 307 GELYTWGSN 315 (430)
Q Consensus 307 g~v~~wG~n 315 (430)
|.|+.|-.+
T Consensus 278 g~i~iw~~~ 286 (379)
T 3jrp_A 278 NKVTLWKEN 286 (379)
T ss_dssp SSEEEEEEE
T ss_pred CcEEEEeCC
Confidence 999988654
No 49
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.17 E-value=21 Score=36.41 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=32.2
Q ss_pred CcceEEEEC-CCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEE----cCCCeEEEEEcCCcEEEEecC
Q 014122 80 GAHTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS----TGYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 80 ~~~~~~lt~-~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~----~G~~~~~~lt~~G~vy~~G~n 150 (430)
..|+++... +|+||++|-.....-... .-............+. .-..|++++..+|+||++|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~-------dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLS-------DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCC-------CCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccc-------cEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 357777766 999999984322110000 0011110111222221 224566666568999999853
No 50
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.62 E-value=13 Score=33.37 Aligned_cols=203 Identities=9% Similarity=-0.018 Sum_probs=103.1
Q ss_pred CceEEEEeC------CcceEEEECCCCEEEEecCCCCccccCCCCCccccceEec--cCCCcEEEEEcCC------CeEE
Q 014122 71 HSLKALACG------GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTGY------HHSS 136 (430)
Q Consensus 71 ~~I~~i~~G------~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~--~l~~~i~~i~~G~------~~~~ 136 (430)
..|..|+.. ....++-..+|.|.+|-......+ ....... .....|..++... ...+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI---------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE---------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE---------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 468888776 344666677888999965422111 0111111 0123565555432 3566
Q ss_pred EEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC---CceeEEEEcCCcEEEeecCCCCCCCCCC
Q 014122 137 AITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (430)
Q Consensus 137 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~wG~n~~gqlg~~~ 213 (430)
.-..+|.|..|-.... + ....+. .....|..++.. ....+.-..+|.|+.|-.....
T Consensus 90 ~~~~dg~i~v~d~~~~-~------------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------ 149 (366)
T 3k26_A 90 VAGSRGIIRIINPITM-Q------------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------ 149 (366)
T ss_dssp EEETTCEEEEECTTTC-C------------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------
T ss_pred EecCCCEEEEEEchhc-e------------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------
Confidence 6778899999964321 0 011121 123356666654 3455556779999999543210
Q ss_pred CCccccccccccccCcceee--cccCccEEEEEeC--CCeEEEEecCCcEEEEecCCCCcccc---------CCCCCCCC
Q 014122 214 ESSILGFLRSTSEYTPRLIK--ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLF---------QEGNHARR 280 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~---------~~~~~~~~ 280 (430)
....+. ......|..++.. ....+....+|.|+.|-......+.. ........
T Consensus 150 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 150 --------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp --------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred --------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 000110 0112246666654 34555667889999997543211100 00000000
Q ss_pred Cee--------ec-CCCCeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 281 PSL--------IS-KLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 281 p~~--------i~-~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
+.. .. ....|..+.......+....+|.|..|-...
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 000 00 1123666665566667777899999998654
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=88.49 E-value=16 Score=34.18 Aligned_cols=109 Identities=9% Similarity=-0.043 Sum_probs=57.7
Q ss_pred CceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEe
Q 014122 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (430)
Q Consensus 71 ~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G 148 (430)
..|..|+...+ +.+.-..||.|.+|-..... ....+..-...+..++......+.-..++.++.|-
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~------------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc------------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 35888876644 33445678999999643321 11222222336666666556666667778888875
Q ss_pred cCCCCCCCCCCCCCcccccceEEe-ccCCceEEEEecCCceeEEEEcCCcEEEeec
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~ 203 (430)
...... .. ..+. .................+....+|.|..|-.
T Consensus 216 ~~~~~~-----------~~-~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 216 VRVAEH-----------HV-ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp TTSSSC-----------EE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred ecccce-----------ee-EEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 432110 00 1111 1112222333334445566677899999864
No 52
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=88.32 E-value=17 Score=34.10 Aligned_cols=138 Identities=9% Similarity=0.082 Sum_probs=68.7
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCcccc
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
..++.+.+.|+.|.+|=.... + ....+... ...|..|+...+ ..+.-..||.|..|-......+
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~~-~----------~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~-- 185 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYETG-D----------FERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI-- 185 (410)
T ss_dssp SSEEEEEESSSCEEEEETTTC-C----------CCEEECCC-SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--
T ss_pred CCEEEEEeCCCeEEEEECCCC-c----------EEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--
Confidence 445666677888888864321 1 01111111 124666665533 3333456788888854321111
Q ss_pred CCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEe
Q 014122 106 SENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (430)
..+..-...|..++. ...+.+.-..|+.|..|-.... ++ ...+.. ....|..++
T Consensus 186 ----------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~------------~~~~~~-h~~~v~~~~ 241 (410)
T 1vyh_C 186 ----------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YC------------VKTFTG-HREWVRMVR 241 (410)
T ss_dssp ----------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CE------------EEEEEC-CSSCEEEEE
T ss_pred ----------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cE------------EEEEeC-CCccEEEEE
Confidence 111112235666554 3456666778999999975321 10 001111 112344444
Q ss_pred cC--CceeEEEEcCCcEEEeec
Q 014122 184 LG--FEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 184 ~g--~~~~~~lt~~g~v~~wG~ 203 (430)
.. ....+.-..+|.|..|-.
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEET
T ss_pred ECCCCCEEEEEcCCCeEEEEEC
Confidence 33 233444567889999954
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.24 E-value=14 Score=33.15 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=99.5
Q ss_pred CceEEEEeCCc-----ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEE--------cCCCeEEE
Q 014122 71 HSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--------TGYHHSSA 137 (430)
Q Consensus 71 ~~I~~i~~G~~-----~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~--------~G~~~~~~ 137 (430)
..|..++.... ..+.-..||.|..|-..... .....+......|..+. ......+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEecccceEEEeeccccccCCCccEEEE
Confidence 35778877653 34555678999999543321 01122333334566663 23446666
Q ss_pred EEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccC---CceEEEEe------cCCceeEEEEcCCcEEEeecCCCCC
Q 014122 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS---GIFTKQAA------LGFEQSVAVTGGGKVLSWGAGGSGR 208 (430)
Q Consensus 138 lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~---~~~i~~i~------~g~~~~~~lt~~g~v~~wG~n~~gq 208 (430)
-..+|.|..|-...... ....+.... ...+..++ ......+.-..+|.|+.|-....
T Consensus 135 ~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 200 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-- 200 (357)
T ss_dssp EETTSCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--
T ss_pred EeCCCeEEEEeCCCCCC------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--
Confidence 67889999996543210 011111111 22455554 33344555567899999954321
Q ss_pred CCCCCCCccccccccccccCcceeecccCccEEEEEeC-----CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCee
Q 014122 209 LGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG-----FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL 283 (430)
Q Consensus 209 lg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~ 283 (430)
.+...... ...|..++.. ....++-..+|.|+.|-......+ .......
T Consensus 201 -------------------~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~ 254 (357)
T 3i2n_A 201 -------------------ALRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVS 254 (357)
T ss_dssp -------------------EEEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEE
T ss_pred -------------------ceeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeec
Confidence 01111111 1246666554 355555678899999964331110 0000001
Q ss_pred e-cCCCCeeeEEeeCC---eEEEEEcCCCEEEEeCCC
Q 014122 284 I-SKLPYSEEVVCGGY---HTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 284 i-~~~~~i~~v~~G~~---~~~~l~~~g~v~~wG~n~ 316 (430)
. .....|..+..... ..+.-..+|.|+.|-...
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 1 12235666665443 344566789999997543
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.99 E-value=16 Score=33.50 Aligned_cols=190 Identities=10% Similarity=0.021 Sum_probs=88.8
Q ss_pred ceEEEEeCC-cceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEe
Q 014122 72 SLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWG 148 (430)
Q Consensus 72 ~I~~i~~G~-~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G 148 (430)
.|..|+... ...++-..+|.|.+|-...... ..........-...|..++.. ....+.-..+|.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKES--------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccce--------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 366666443 3344455677888873221110 001111111122356666543 34555567889999996
Q ss_pred cCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC---CceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccc
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~ 225 (430)
.... + ....+. .....|..|+.. ....+....+|.|..|-......+.
T Consensus 168 ~~~~-~------------~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--------------- 218 (357)
T 4g56_B 168 LSQK-A------------VLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--------------- 218 (357)
T ss_dssp TTTT-E------------EEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC---------------
T ss_pred CCCC-c------------EEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee---------------
Confidence 4321 0 001111 122346666543 2344556778999999432111000
Q ss_pred ccCcceee-cccCccEEEEEeC---CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEee---C
Q 014122 226 EYTPRLIK-ELEGVKVKIAAAG---FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG---G 297 (430)
Q Consensus 226 ~~~p~~i~-~~~~~~i~~i~~g---~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G---~ 297 (430)
.+. ......+..++.. ....+.-..++.|+.|-.... + ....+.. ...|..++.. .
T Consensus 219 -----~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~~~~~~~v~~l~~sp~~~ 282 (357)
T 4g56_B 219 -----RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTSAVHSQNITGLAYSYHSS 282 (357)
T ss_dssp -----BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEECCCSSCEEEEEECSSSS
T ss_pred -----eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------EeEEEeccceeEEEEEEcCCCC
Confidence 000 0111235555543 223333467899999954321 1 1112222 2246666643 2
Q ss_pred CeEEEEEcCCCEEEEeC
Q 014122 298 YHTCVLTSGGELYTWGS 314 (430)
Q Consensus 298 ~~~~~l~~~g~v~~wG~ 314 (430)
...+.-..||.|+.|-.
T Consensus 283 ~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 283 PFLASISEDCTVAVLDA 299 (357)
T ss_dssp CCEEEEETTSCEEEECT
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 33444667899999953
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=86.58 E-value=20 Score=33.07 Aligned_cols=200 Identities=9% Similarity=0.028 Sum_probs=95.7
Q ss_pred CceEEEEeCC---cceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC---CCeEEEEEcCCcE
Q 014122 71 HSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGEL 144 (430)
Q Consensus 71 ~~I~~i~~G~---~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G---~~~~~~lt~~G~v 144 (430)
..|..++... ...+.-..||.|+.|-.......... .....+.........|..++.. ....+.-..+|.|
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN---YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT---CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc---ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 3577777653 34445566889999865432200000 0001111111122355555543 3344555678999
Q ss_pred EEEecCCCCCCCCCCCCCcccccceEEeccC-----CceEEEEecCCc---eeEEEEcCC---cEEEeecCCCCCCCCCC
Q 014122 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLS-----GIFTKQAALGFE---QSVAVTGGG---KVLSWGAGGSGRLGHGQ 213 (430)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~-----~~~i~~i~~g~~---~~~~lt~~g---~v~~wG~n~~gqlg~~~ 213 (430)
+.|-..... ....+.... ...|..++...+ ..+.-..++ .|+.|-.....+
T Consensus 191 ~iwd~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~----- 252 (416)
T 2pm9_A 191 SIWDLKAKK-------------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT----- 252 (416)
T ss_dssp EEEETTTTE-------------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----
T ss_pred EEEECCCCC-------------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----
Confidence 999654210 111111111 334666665433 344445566 888885432110
Q ss_pred CCccccccccccccCcceeec-ccCccEEEEEe---CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CC
Q 014122 214 ESSILGFLRSTSEYTPRLIKE-LEGVKVKIAAA---GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LP 288 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~p~~i~~-~~~~~i~~i~~---g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~ 288 (430)
+..... .....|..++. .....+.-..+|.|+.|-......+ ..+.. ..
T Consensus 253 ---------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~ 306 (416)
T 2pm9_A 253 ---------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFPARGN 306 (416)
T ss_dssp ---------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEECSSS
T ss_pred ---------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeecCCCC
Confidence 100000 11124666655 3455666678899999954331111 11111 12
Q ss_pred CeeeEEeeC---CeEEEEEcCCCEEEEeCCCC
Q 014122 289 YSEEVVCGG---YHTCVLTSGGELYTWGSNEN 317 (430)
Q Consensus 289 ~i~~v~~G~---~~~~~l~~~g~v~~wG~n~~ 317 (430)
.|..++... ...+.-..||.|..|-....
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 355555443 33444556889999986553
No 56
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=85.13 E-value=37 Score=34.87 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=100.9
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC----CCeEEEEEcCCcEE
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G----~~~~~~lt~~G~vy 145 (430)
.|..++...+ ..+.-..||.|.+|-.... .......+..-...|..++.. ....+.-..+|.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4666665433 3444457899999953210 111122222233467777753 45677778899999
Q ss_pred EEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC----ceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccc
Q 014122 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF----EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (430)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~ 221 (430)
.|-.... ...+..........|..++... ...+..+.+|.|..|-.......
T Consensus 81 vwd~~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------------ 136 (753)
T 3jro_A 81 IWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------------ 136 (753)
T ss_dssp EEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC------------
T ss_pred EEECCCC------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc------------
Confidence 9975421 1111111111233566666553 35666678999999965322110
Q ss_pred ccccccCcceeecccCccEEEEEeC---------------CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC
Q 014122 222 RSTSEYTPRLIKELEGVKVKIAAAG---------------FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK 286 (430)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~ 286 (430)
.+..+.. ....|..++.. ....+.-..+|.|+.|-........ .....+..
T Consensus 137 ------~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-------~~~~~~~~ 202 (753)
T 3jro_A 137 ------SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-------VLESTLEG 202 (753)
T ss_dssp ------CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-------EEEEEECC
T ss_pred ------ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-------eeeeeecC
Confidence 0111111 11235555443 3445556778999999643311100 00011111
Q ss_pred -CCCeeeEEeeC-----CeEEEEEcCCCEEEEeCCC
Q 014122 287 -LPYSEEVVCGG-----YHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 287 -~~~i~~v~~G~-----~~~~~l~~~g~v~~wG~n~ 316 (430)
...|..++... ...+....+|.|..|-...
T Consensus 203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 22466666543 3455566789999997544
No 57
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=84.78 E-value=20 Score=33.77 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=48.1
Q ss_pred ccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEE
Q 014122 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (430)
Q Consensus 113 ~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l 192 (430)
..|.....++. |.+|+. ++..+++.++|.|..|-..+..+.. .+..+ ...+.++.+-....+++
T Consensus 79 ~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-------------~~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-------------TVTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-------------EEEEC-SSCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-------------cccee-ecceeeEEecCCCEEEE
Confidence 45533333776 999999 7777777899999999765433211 11111 12345555555557778
Q ss_pred EcCCcEEEeec
Q 014122 193 TGGGKVLSWGA 203 (430)
Q Consensus 193 t~~g~v~~wG~ 203 (430)
+++|.|++|-.
T Consensus 143 ~~dG~L~v~dl 153 (388)
T 1xip_A 143 NSVNDLSALDL 153 (388)
T ss_dssp ETTSEEEEEET
T ss_pred ECCCCEEEEEc
Confidence 99999999944
No 58
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=84.75 E-value=26 Score=32.88 Aligned_cols=249 Identities=9% Similarity=0.010 Sum_probs=116.7
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc---ceEEEECCCCEEEEecCCCCccc
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---HTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~---~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
..++.+.+.++.|++|-......... ......|..........|..|+.... ..+.-..+|.|.+|-.+.....
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~- 217 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE- 217 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG-
T ss_pred CcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC-
Confidence 34566666788888888654211110 00001111111111224555554432 4444556899999976542211
Q ss_pred cCCCCCcccc-ceEeccCCCcEEEEEc---CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEE
Q 014122 105 ISENIGYSLE-PLRISGLKKEVVQIST---GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (430)
Q Consensus 105 ~~~~~~~~~~-p~~i~~l~~~i~~i~~---G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~ 180 (430)
..... ...+..-...|..|+. +....+.-..+|.|+.|-...... ..+..........|.
T Consensus 218 -----~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 218 -----HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-----------SKPSHTVDAHTAEVN 281 (430)
T ss_dssp -----GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-----------SSCSEEEECCSSCEE
T ss_pred -----CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-----------CcceeEeecCCCCeE
Confidence 01111 1222223346777765 344556667899999997653210 011111111223455
Q ss_pred EEecCCc--e-eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC---CeEEEEe
Q 014122 181 QAALGFE--Q-SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACID 254 (430)
Q Consensus 181 ~i~~g~~--~-~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt 254 (430)
.|+.... + .+.-..+|.|..|-.....+ |..........|..++... ...+.-.
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKL--------------------KLHSFESHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------------CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence 5555432 2 33446789999996532111 1111111122466666543 2344456
Q ss_pred cCCcEEEEecCCCCccccCCCCCCCCCeeecC----CCCeeeEEeeCC---eEEEEEcCCCEEEEeCC
Q 014122 255 ENGRVYIFGDRAVDKMLFQEGNHARRPSLISK----LPYSEEVVCGGY---HTCVLTSGGELYTWGSN 315 (430)
Q Consensus 255 ~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~----~~~i~~v~~G~~---~~~~l~~~g~v~~wG~n 315 (430)
.+|.|..|-....+............|..+.. ...|..+..... ..+....+|.|..|-..
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 78999999754422110000000001122211 123666655433 44556678888888754
No 59
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.37 E-value=22 Score=31.63 Aligned_cols=219 Identities=12% Similarity=0.055 Sum_probs=120.7
Q ss_pred cceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC---CcceEEEECCCC
Q 014122 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGC 91 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G---~~~~~~lt~~G~ 91 (430)
++|....+.....+..++..+++|.+|.---.+ |.... ... + ..++++|+.+.+- ....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~---~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGS---KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSE---ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCc---ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 566666666666676677777889988643221 11000 000 3 3367789988761 245788999998
Q ss_pred EEEEecCCCCccccCCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccce
Q 014122 92 VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPT 169 (430)
Q Consensus 92 vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~ 169 (430)
+.-.-...+.+- ..-..-..+. -.+.++.+. .+.++.+++|++|++|.+-.......|.......
T Consensus 92 iKr~~l~~~~~~------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~------ 158 (276)
T 3no0_A 92 VKKIPLAEFEYK------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ------ 158 (276)
T ss_dssp EEEEEGGGTTTC------STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE------
T ss_pred EEEEEHHHhhhh------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE------
Confidence 887765443210 0001111111 112444443 3566799999999999998766555543322211
Q ss_pred EEeccCCceEEEEecC--CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEE--e
Q 014122 170 KVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA--A 245 (430)
Q Consensus 170 ~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~--~ 245 (430)
.+....+.+|+.+... ....+++|++|.+.-.-...+-..+++... ... + ..+..++.+. .
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG---------v~~----i--~~~~~lv~~~~~~ 223 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG---------TEV----S--GTKDTLVDLIPIK 223 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC---------EEC----C--CSSSCEEEEEEES
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc---------eEE----E--cCCCcEEEEEEeC
Confidence 1222234567666543 346778899998887765554333332110 000 0 1122343332 3
Q ss_pred CCCeEEEEecCCcEEE--EecCCCCccc
Q 014122 246 GFLHSACIDENGRVYI--FGDRAVDKML 271 (430)
Q Consensus 246 g~~~~~~lt~~g~vy~--wG~~~~gqlg 271 (430)
+....++++++|++.. +-...-..++
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred CCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 4567888999999988 8655544444
No 60
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=84.05 E-value=22 Score=31.41 Aligned_cols=186 Identities=9% Similarity=0.062 Sum_probs=91.3
Q ss_pred ccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcc--eEEEECCCCEEEEecCCC
Q 014122 23 KLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDF 100 (430)
Q Consensus 23 ~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~ 100 (430)
+......++.+.+.++.|.+|..... .....+.. ....|..++...+. .+.-..||.|..|-....
T Consensus 30 ~~s~~~~~l~s~~~dg~i~iw~~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 30 KFSPNGEWLASSSADKLIKIWGAYDG-----------KFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEeeCCCeEEEEeCCCc-----------ccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 33334455666667888888864321 11111211 12357777765443 344457888999954321
Q ss_pred CccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCce
Q 014122 101 GQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIF 178 (430)
Q Consensus 101 g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~ 178 (430)
. ....+..-...|..+.. .....+.-..+|.|+.|-..... ....+. .....
T Consensus 98 ~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~-~~~~~ 151 (312)
T 4ery_A 98 K------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLP-AHSDP 151 (312)
T ss_dssp C------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------------EEEEEC-CCSSC
T ss_pred c------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-------------EEEEec-CCCCc
Confidence 1 11122222234544443 33455666778999999643210 001111 11223
Q ss_pred EEEEecC--CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEe--CCCeEEEEe
Q 014122 179 TKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACID 254 (430)
Q Consensus 179 i~~i~~g--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt 254 (430)
|..++.. ....+.-..+|.|..|-...... ...+.......+..++. ...+.++-.
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--------------------LKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------------------EEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------------eeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 5555443 33445556788999995422100 00111111123433333 344566667
Q ss_pred cCCcEEEEecCC
Q 014122 255 ENGRVYIFGDRA 266 (430)
Q Consensus 255 ~~g~vy~wG~~~ 266 (430)
.+|.|..|-...
T Consensus 212 ~d~~i~iwd~~~ 223 (312)
T 4ery_A 212 LDNTLKLWDYSK 223 (312)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 889999996543
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=83.78 E-value=24 Score=31.61 Aligned_cols=149 Identities=10% Similarity=0.005 Sum_probs=83.2
Q ss_pred CcEEEEEcCC-----CeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--CceeEEEEcC
Q 014122 123 KEVVQISTGY-----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGG 195 (430)
Q Consensus 123 ~~i~~i~~G~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~ 195 (430)
..|..|+... ...+.-..+|.|..|-....++ .....+.. ....|..++.. ....+....+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 4778877654 4556667789999997654221 11111211 22345555543 3355566779
Q ss_pred CcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEe--CC--CeEEEEecCCcEEEEecCCCCccc
Q 014122 196 GKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GF--LHSACIDENGRVYIFGDRAVDKML 271 (430)
Q Consensus 196 g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~--~~~~~lt~~g~vy~wG~~~~gqlg 271 (430)
|.|..|-.... .+..+.. ....|..++. .. ...+....+|.|+.|-....
T Consensus 108 g~v~iwd~~~~---------------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 161 (368)
T 3mmy_A 108 KTAKMWDLSSN---------------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS---- 161 (368)
T ss_dssp SEEEEEETTTT---------------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS----
T ss_pred CcEEEEEcCCC---------------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----
Confidence 99999954321 0111111 1224666654 32 23444567899999954321
Q ss_pred cCCCCCCCCCeeecCCCCeeeEEeeCCeEEEEEcCCCEEEEeCCC
Q 014122 272 FQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 272 ~~~~~~~~~p~~i~~~~~i~~v~~G~~~~~~l~~~g~v~~wG~n~ 316 (430)
.....+.....+..+..-....++.+.++.+..|-...
T Consensus 162 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 162 -------NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp -------SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred -------cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 11122233335666666667778888899999987644
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=83.14 E-value=36 Score=33.22 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=40.0
Q ss_pred eEEEEe-CCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecC
Q 014122 73 LKALAC-GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 73 I~~i~~-G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n 150 (430)
+..+.. .....++-..+|.|+.|-.... .....+..-...|..++. .. .+.-..+|.|..|-..
T Consensus 301 ~~~~~~~~~~~l~~~~~~g~i~~~d~~~~------------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 301 QVGVVATGNGRIISLSLDGTLNFYELGHD------------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEETTEE------------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred eeEEEeCCCCeEEEEECCCCEEEEECCCC------------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 344333 4556667788899999954321 111223333447888888 66 7777889999998543
No 63
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.92 E-value=28 Score=31.80 Aligned_cols=215 Identities=10% Similarity=-0.041 Sum_probs=111.6
Q ss_pred EeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCC-----CeEEEEEcCCcEEEEecCC
Q 014122 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 77 ~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~-----~~~~~lt~~G~vy~~G~n~ 151 (430)
+...+..+++|+.|++|..-...-...+.............+. -.++|+.+.... ...+++|++|.+.-.-...
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 4556668889999999998654433222111111100011111 134788876543 4688999999888776443
Q ss_pred CCCCCCCCCCCcccccceE-EeccCCceEEE--EecCCceeEEEEcCCcEEEeecC--CCCCCCCCCCCccccccccccc
Q 014122 152 NGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAG--GSGRLGHGQESSILGFLRSTSE 226 (430)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~wG~n--~~gqlg~~~~~~~~~~~~~~~~ 226 (430)
+-... ..-.. +..-.+..++. ++.+.++.+++|++|++|.+-.. .--.+|+...- .
T Consensus 129 ~~~~~---------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G---------v- 189 (327)
T 3uc1_A 129 FDSNR---------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG---------V- 189 (327)
T ss_dssp GCCCC---------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC---------E-
T ss_pred hhccc---------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC---------e-
Confidence 21110 00000 11112333443 33466788999999999999776 44444443221 0
Q ss_pred cCcceeecccCccEEEEEeC--CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeE--EeeCCeEE
Q 014122 227 YTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEV--VCGGYHTC 301 (430)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v--~~G~~~~~ 301 (430)
+.+...++..|+.+..- ..+.+++|++|.+-..-...+.....+...... - ++.. -+.+..+ ..+....+
T Consensus 190 ---~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~-~-~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 190 ---QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT-V-MYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp ---ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES-S-CCCTTTCSEEEEEEECTTCEEE
T ss_pred ---eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE-E-EecCCCCeEEEEEEeCCCccEE
Confidence 11222234466666543 346777888887766543332221111110000 0 1111 1233333 23567888
Q ss_pred EEEcCCCEEEEeCCC
Q 014122 302 VLTSGGELYTWGSNE 316 (430)
Q Consensus 302 ~l~~~g~v~~wG~n~ 316 (430)
+++++|++.-+-..+
T Consensus 265 l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 265 AVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEGGGCEEEEEGGG
T ss_pred EEcCCCeEEEEehhh
Confidence 999999998876544
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.48 E-value=27 Score=31.38 Aligned_cols=249 Identities=6% Similarity=-0.144 Sum_probs=116.1
Q ss_pred cccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC--cceEEEECCCCEEEEecCC
Q 014122 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLND 99 (430)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~--~~~~~lt~~G~vy~wG~n~ 99 (430)
+++.....++.+...++.|++|-.... .......+.. ....|..++... ...+.-..||.|+.|-...
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGN---------KWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETT---------EEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCC---------cEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 333344455666667889999864331 0001111111 223577776553 3344456788899885422
Q ss_pred CCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCc
Q 014122 100 FGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (430)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~ 177 (430)
.. ......+......|..++. .....++-..+|.|+.|-...... ......+......
T Consensus 84 ~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 84 RT----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----------WWVCKHIKKPIRS 143 (372)
T ss_dssp TE----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----------EEEEEEECTTCCS
T ss_pred Ce----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc----------ceeeeeeecccCC
Confidence 10 0011111223335666654 344566667889998886543210 0011112111133
Q ss_pred eEEEEecCC--ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecc--cCccEEEEEeC--CCeEE
Q 014122 178 FTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAG--FLHSA 251 (430)
Q Consensus 178 ~i~~i~~g~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g--~~~~~ 251 (430)
.|..++... ...+.-..+|.|+.|-...... ......... .........+..+ ....|..++.. ..+.+
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV-EERPAPTPW----GSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTT-SCCCCCBTT----BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccc-ccccccccc----ccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 466665433 3455556799999996432111 000000000 0000011112111 12246666553 33555
Q ss_pred EEecCCcEEEEecCCCCccccCCCCCCCCCeeecCC-CCeeeEEee-CCeEEEEEcCCCEEEEeCCC
Q 014122 252 CIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCG-GYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 252 ~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~-~~i~~v~~G-~~~~~~l~~~g~v~~wG~n~ 316 (430)
....+|.|+.|-......+ ..+... ..|..++.. ....++...+|.|+.|-...
T Consensus 219 ~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAV-----------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTTEE-----------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCcee-----------EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 5678888999865431111 111111 135555433 33445555788888876543
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=81.66 E-value=28 Score=31.00 Aligned_cols=143 Identities=8% Similarity=-0.045 Sum_probs=71.1
Q ss_pred ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccC----CCcEEEEE------cCCCeEEEEEcCCcEEEEecCC
Q 014122 82 HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGL----KKEVVQIS------TGYHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 82 ~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l----~~~i~~i~------~G~~~~~~lt~~G~vy~~G~n~ 151 (430)
..+.-..||.|..|-...... ....+... ...+..+. ......+.-.++|.|+.|-...
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDD-----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSS-----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCeEEEEeCCCCCC-----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 455556788999995432210 11111111 12455555 3445566667789999996542
Q ss_pred CCCCCCCCCCCcccccceEEeccCCceEEEEecC-----CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccc
Q 014122 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (430)
Q Consensus 152 ~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~ 226 (430)
. .+..... ....|..++.. ....++-..+|.|+.|-......+ ..
T Consensus 200 ~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------~~ 249 (357)
T 3i2n_A 200 M--------------ALRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT---------------KG 249 (357)
T ss_dssp T--------------EEEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT---------------TE
T ss_pred C--------------ceeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc---------------cc
Confidence 1 0111111 12345666554 345555677999999954221000 00
Q ss_pred cCcceeecccCccEEEEEeCCC---eEEEEecCCcEEEEecCC
Q 014122 227 YTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRA 266 (430)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~~~ 266 (430)
.....+. .....|..++.... ..+.-..+|.|+.|-...
T Consensus 250 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 250 FASVSEK-AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred eeeeccC-CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 0000011 11235666665443 344456789999996543
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=81.38 E-value=33 Score=31.51 Aligned_cols=200 Identities=9% Similarity=0.005 Sum_probs=95.2
Q ss_pred CceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC---CCeEEEEEcCCcEE
Q 014122 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELY 145 (430)
Q Consensus 71 ~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G---~~~~~~lt~~G~vy 145 (430)
..|..++...+. .+.-..||.|..|-...... .......+......|..++.. ....+.-..+|.|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN--------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS--------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc--------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 357777765443 33445789999995432100 001112222233356565543 45566667789999
Q ss_pred EEecCCCCCCCCCCCCCcccccceEEe--ccCCceEEEEecCCc---eeEEEEcCCcEEEeecCCCCCCCCCCCCccccc
Q 014122 146 MWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (430)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g~~---~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~ 220 (430)
.|-......... ...+..+. ......|..++...+ ..+.-..+|.|..|-......
T Consensus 140 iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------------ 200 (416)
T 2pm9_A 140 IWDMNKCTESPS-------NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE------------ 200 (416)
T ss_dssp BCBTTTTSSCTT-------TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE------------
T ss_pred EEECCCCccccc-------cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc------------
Confidence 997643220000 00011110 001123445554332 334445788999995432100
Q ss_pred cccccccCcceeeccc-----CccEEEEEeCCC---eEEEEecCC---cEEEEecCCCCccccCCCCCCCCCeeec--CC
Q 014122 221 LRSTSEYTPRLIKELE-----GVKVKIAAAGFL---HSACIDENG---RVYIFGDRAVDKMLFQEGNHARRPSLIS--KL 287 (430)
Q Consensus 221 ~~~~~~~~p~~i~~~~-----~~~i~~i~~g~~---~~~~lt~~g---~vy~wG~~~~gqlg~~~~~~~~~p~~i~--~~ 287 (430)
...+.... ...|..++.... ..+.-..++ .|+.|-.....+. ...+. ..
T Consensus 201 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~ 262 (416)
T 2pm9_A 201 --------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQ 262 (416)
T ss_dssp --------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCS
T ss_pred --------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCcc
Confidence 00111100 224666655432 344445566 7888864431110 01111 12
Q ss_pred CCeeeEEe---eCCeEEEEEcCCCEEEEeCC
Q 014122 288 PYSEEVVC---GGYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 288 ~~i~~v~~---G~~~~~~l~~~g~v~~wG~n 315 (430)
..|..++. .....+.-..+|.|+.|-..
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred CceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 24666664 34555667778999999644
No 67
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=80.86 E-value=32 Score=31.02 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=56.8
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEE--EECCCCEEEEecCCCCcccc
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLF--LTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~--lt~~G~vy~wG~n~~g~lg~ 105 (430)
..++.+.+.|+.|.+|-.....+.+ ....|.....--...|..++......++ -..||.|..|-.....
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~---- 109 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT---- 109 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC----
T ss_pred CCEEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----
Confidence 4456667788999999654321111 0111222111122357777766544333 4458889999543211
Q ss_pred CCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEecC
Q 014122 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n 150 (430)
....+..-...|..++.. ....+.-..+|.|..|-..
T Consensus 110 --------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 110 --------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp --------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred --------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 112222233456666543 3456666789999999653
No 68
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=80.20 E-value=33 Score=30.75 Aligned_cols=218 Identities=10% Similarity=0.081 Sum_probs=102.1
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccce-eeCccCCCceEEEEeCCcceEEE--ECCCCEEEEecCCCCcccc
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV-VCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~-~v~~~~~~~I~~i~~G~~~~~~l--t~~G~vy~wG~n~~g~lg~ 105 (430)
..+.+.+.|+.|.+|-.... ..... .+.. -...|..++......+++ ..|+.|..|-.....+
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~----------~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~--- 114 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDE----------RLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ--- 114 (321)
T ss_dssp CEEEEEETTSCEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---
T ss_pred CEEEEEcCCCCEEEEECCCC----------Ceeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE---
Confidence 45666778888888864321 01111 1111 123477777665544443 4588899995432111
Q ss_pred CCCCCccccceEeccCCCcE--EEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEe
Q 014122 106 SENIGYSLEPLRISGLKKEV--VQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i--~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (430)
...+..-+..+ ..++--....+.-+.+|.|..|...... ....+. .....|..++
T Consensus 115 ---------~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-------------~~~~~~-~~~~~v~~~~ 171 (321)
T 3ow8_A 115 ---------IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-------------KEYSLD-TRGKFILSIA 171 (321)
T ss_dssp ---------EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-------------EEEEEE-CSSSCEEEEE
T ss_pred ---------EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-------------eeEEec-CCCceEEEEE
Confidence 11111111122 2333334455555677888888653211 011111 1222355554
Q ss_pred cCC--ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC--CeEEEEecCCcE
Q 014122 184 LGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRV 259 (430)
Q Consensus 184 ~g~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v 259 (430)
... ...+.-..+|.|..|-.... + ....+.. ....|..++... ...+.-..||.|
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~-~-------------------~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i 230 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATG-K-------------------LLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYI 230 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-E-------------------EEEEECC-CSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-c-------------------EEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeE
Confidence 433 33444466888888854211 0 0000111 011344444432 334444678888
Q ss_pred EEEecCCCCccccCCCCCCCCCeeecCC-CCeeeEEee--CCeEEEEEcCCCEEEEeCC
Q 014122 260 YIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCG--GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 260 y~wG~~~~gqlg~~~~~~~~~p~~i~~~-~~i~~v~~G--~~~~~~l~~~g~v~~wG~n 315 (430)
..|-...... ...+... ..|..++.. ..+.+.-..||.|..|-..
T Consensus 231 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 231 KIYDVQHANL-----------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EEEETTTCCE-----------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEECCCcce-----------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 8886432111 1111211 235555543 3345556678899998653
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=80.11 E-value=46 Score=32.43 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=59.7
Q ss_pred CceEEEEeC-CcceEEEECCCCEEEEecCCCCccccCCCCCccccceEecc----CCCcEEEEEc-CCCeEEEEEcCCcE
Q 014122 71 HSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG----LKKEVVQIST-GYHHSSAITVDGEL 144 (430)
Q Consensus 71 ~~I~~i~~G-~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~----l~~~i~~i~~-G~~~~~~lt~~G~v 144 (430)
..|..++.. ....+....||.|..|-......+ ..+.. ....+..+.. .....++.+.+|.|
T Consensus 254 ~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 254 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCV------------QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321 (615)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE------------EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred CceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE------------EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCE
Confidence 457777664 334555667889999965422111 11110 1123333332 56677788889999
Q ss_pred EEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeec
Q 014122 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~ 203 (430)
+.|-... ..+..........|..++. .. .+.-..+|.|..|-.
T Consensus 322 ~~~d~~~--------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 322 NFYELGH--------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEETTE--------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTT
T ss_pred EEEECCC--------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEc
Confidence 9996432 1111111123346888888 66 666778999999954
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=80.08 E-value=33 Score=30.80 Aligned_cols=123 Identities=7% Similarity=-0.053 Sum_probs=59.6
Q ss_pred CceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEe-ccCCCcEEEEEcC--CCeEEEEEcCCcEE
Q 014122 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI-SGLKKEVVQISTG--YHHSSAITVDGELY 145 (430)
Q Consensus 71 ~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i-~~l~~~i~~i~~G--~~~~~~lt~~G~vy 145 (430)
..|..++.... ..+.-..+|.|+.|-...... ......+ ......|..++.. ....+.-..+|.|+
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT---------EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc---------ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 35777776533 444556788888885432210 0011111 1123356666653 34566667899999
Q ss_pred EEecCCCCCCCCCCCCC---cccccceEEecc--CCceEEEEecCC--ceeEEEEcCCcEEEeec
Q 014122 146 MWGKNSNGQLGLGKKAA---KVIPIPTKVECL--SGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 146 ~~G~n~~gqlg~~~~~~---~~~~~p~~i~~~--~~~~i~~i~~g~--~~~~~lt~~g~v~~wG~ 203 (430)
.|-...... ....... ...+....+..+ ....|..++... .+.+....+|.|..|-.
T Consensus 168 ~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 168 IFSAYIKEV-EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEECCCTTT-SCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEcccccc-cccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 997532110 0000000 000111122212 123466665533 35555677888999854
No 71
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=79.97 E-value=46 Score=32.30 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=54.1
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~ 147 (430)
.|..++...+ ..+.-..||.|..|-.+.. ....+......+..++. .....+.-.++|.|..|
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 5777766543 3344566788888853211 11222323345555544 34456666788888888
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC--ceeEEEEcCCcEEEee
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWG 202 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~wG 202 (430)
-.+ +++ ...+.. ....|..++... ...+.-..++.|..|-
T Consensus 372 ~~~--~~~------------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 372 NRN--GQL------------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp ETT--CCE------------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCC--CCE------------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 532 111 011111 123455555433 3444556788899984
No 72
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=79.39 E-value=36 Score=30.73 Aligned_cols=217 Identities=14% Similarity=0.040 Sum_probs=109.6
Q ss_pred EEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc-----CCCeEEEEEcCCcEEEEecC
Q 014122 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 76 i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~-----G~~~~~~lt~~G~vy~~G~n 150 (430)
++...++.++.|+.|++|..-...-...+..........-..+. -.++|+.+.. ...+.+++|++|.+.-.-..
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 45567788999999999998765433332211111111111121 2336777644 23457888999988876543
Q ss_pred CCCCCCCCCCCCcccccceE-EeccCCceEEEE--ecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccccc
Q 014122 151 SNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQA--ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (430)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~i--~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~ 227 (430)
.+-.... .... +....+..++.+ ..+..+.+++|++|+++.+-...--.+|+....
T Consensus 128 e~~~~~r---------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G------------ 186 (307)
T 1zi0_A 128 EFNRLRT---------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG------------ 186 (307)
T ss_dssp GGTTCCT---------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC------------
T ss_pred Hhhcccc---------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC------------
Confidence 3211100 0001 111122334433 346678899999999999977655444442210
Q ss_pred CcceeecccCccEEEEEeC--CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEe--eCCeEEEE
Q 014122 228 TPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCVL 303 (430)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~--G~~~~~~l 303 (430)
.+.+...++..|+.+..- ....+.++++|.+--.-...+-..+.+.. -...+........+..+.. .....+++
T Consensus 187 -v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-G~~~~~~~~~~~~lv~~~~v~~~~~l~~~ 264 (307)
T 1zi0_A 187 -VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-GVISIKVTERNGLVVGAVQVDDCDQIMMI 264 (307)
T ss_dssp -EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-CEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred -eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-CEEeeEecCCCCeEEEEEEeCCCceEEEE
Confidence 011222234456665432 23466677777655443322221111100 0111111111233444333 45667889
Q ss_pred EcCCCEEEEeCCC
Q 014122 304 TSGGELYTWGSNE 316 (430)
Q Consensus 304 ~~~g~v~~wG~n~ 316 (430)
|++|++.-+-.++
T Consensus 265 t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 265 TDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCEEEEEGGG
T ss_pred cCCCcEEEEeccc
Confidence 9999988766554
No 73
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=78.95 E-value=37 Score=30.69 Aligned_cols=222 Identities=9% Similarity=0.025 Sum_probs=113.0
Q ss_pred CceEE--EEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC-----CCeEEEEEcCCc
Q 014122 71 HSLKA--LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGE 143 (430)
Q Consensus 71 ~~I~~--i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G-----~~~~~~lt~~G~ 143 (430)
..+.. ++...+..+++|++|.+|.+-...-...+..........-..+. -.++|+.+... ..+.+++|++|.
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 125 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGK 125 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCe
Confidence 34444 34556778999999999998654332222211111111111122 23467776553 456899999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccceE-EeccCCceEEEEe--cCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccc
Q 014122 144 LYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (430)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~ 220 (430)
++..-...+-... . .-.. +..-.+.+++.+. .+..+.+++|++|.+..+-....-..|+...-
T Consensus 126 ~kr~~l~~~~~~r----~-----~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G----- 191 (312)
T 1suu_A 126 IARFESTDFKAVK----S-----RGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG----- 191 (312)
T ss_dssp EEEEEGGGGCC-------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----
T ss_pred EEEEEHHHhhccC----C-----CcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----
Confidence 9988765431110 0 0000 1111234455444 35667889999999999977665445543221
Q ss_pred cccccccCcceeecccCccEEEEEe--CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeee-cCCCCeeeE--Ee
Q 014122 221 LRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-SKLPYSEEV--VC 295 (430)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i-~~~~~i~~v--~~ 295 (430)
-+.+...++..|+.+.. .....++++++|.+...-...+...+.+.... ...... .....+..+ ..
T Consensus 192 --------v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv-~~~~~~k~~~~~lv~~~~~~ 262 (312)
T 1suu_A 192 --------VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY-TSYKKSDKKAGSVVDAIAVS 262 (312)
T ss_dssp --------EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-ECSCTTCTTTCSEEEEEEEC
T ss_pred --------eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-EeeEccCCCCCeEEEEEEeC
Confidence 01111112334555433 34567788899988777665554443322111 111111 011123322 22
Q ss_pred eCCeEEEEEcCCCEEEEeCCC
Q 014122 296 GGYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 296 G~~~~~~l~~~g~v~~wG~n~ 316 (430)
.....++++.+|.+.-.-.++
T Consensus 263 ~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 263 EDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TTCEEEEEETTCEEEEEEGGG
T ss_pred CCCEEEEEeCCCeEEEEEccc
Confidence 455667788888776654444
No 74
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=78.90 E-value=38 Score=30.79 Aligned_cols=219 Identities=8% Similarity=0.020 Sum_probs=104.1
Q ss_pred EEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCC
Q 014122 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISEN 108 (430)
Q Consensus 31 ~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~ 108 (430)
+++.+.++.|.+|=...... .........--...|..|+...+. .+.-..||.|..|-....
T Consensus 96 l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------- 159 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------- 159 (344)
T ss_dssp EEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred EEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------
Confidence 44556788888885433111 111111110112357777765443 333456888999854321
Q ss_pred CCccccceEeccCCCcEEEEEcCC---CeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEe-ccCCceEEEEec
Q 014122 109 IGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAAL 184 (430)
Q Consensus 109 ~~~~~~p~~i~~l~~~i~~i~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~-~~~~~~i~~i~~ 184 (430)
.....+..-...|..++... ...+.-..||.|..|-.... +. . ..+. ......+..++.
T Consensus 160 ----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~---------~---~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 160 ----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP---------A---SQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp ----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SC---------E---EECC----CCCEEEEEE
T ss_pred ----cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-ce---------e---eeeecceeeccceeeee
Confidence 11122222234676666532 23444567899999964321 10 0 0111 111223444543
Q ss_pred C--Cce-eEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC---CeEEEEecCCc
Q 014122 185 G--FEQ-SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGR 258 (430)
Q Consensus 185 g--~~~-~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~ 258 (430)
. ..+ .+.-..+|.|..|-..... ....+... ...|..++... .+.+.-..|+.
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~~--------------------~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKSTS--------------------CVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC----------------------CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred cCCCCcceEEeccCCcEEEEECCCCc--------------------EEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCe
Confidence 3 223 3334678999999432110 00111111 22567776542 33444578999
Q ss_pred EEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEeeC-C-eEE-EEEcCCCEEEEeCC
Q 014122 259 VYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGG-Y-HTC-VLTSGGELYTWGSN 315 (430)
Q Consensus 259 vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~-~-~~~-~l~~~g~v~~wG~n 315 (430)
|+.|-... +++ ..+.. ...|..++... . ..+ .-..||.|..|-..
T Consensus 282 i~vwd~~~-~~~-----------~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 282 LAVLDSSL-SEL-----------FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEECTTC-CEE-----------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEECCC-CcE-----------EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 99995322 111 11111 22477776532 2 223 24578999999643
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=77.49 E-value=44 Score=30.74 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=80.2
Q ss_pred EEEeCCcceEEE---ECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc---CCCeEEEEEcCCcEEEEe
Q 014122 75 ALACGGAHTLFL---TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYMWG 148 (430)
Q Consensus 75 ~i~~G~~~~~~l---t~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~---G~~~~~~lt~~G~vy~~G 148 (430)
.+++......++ ..+|.|++|-....+.+.. ....+..-...|..++. .....+.-..+|.|..|-
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 355555555554 4579999997655443210 11112222336777665 445666667899999997
Q ss_pred cCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc---eeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccc
Q 014122 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (430)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~ 225 (430)
....+.... ...+..........|..++...+ ..+.-..+|.|+.|-.....
T Consensus 111 ~~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------------------ 165 (402)
T 2aq5_A 111 IPDGGLVLP-------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA------------------ 165 (402)
T ss_dssp CCTTCCSSC-------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE------------------
T ss_pred ccCCCCccc-------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC------------------
Confidence 654322110 11121111112335666665443 34455678999999543210
Q ss_pred ccCcceee-cccCccEEEEEeC--CCeEEEEecCCcEEEEecC
Q 014122 226 EYTPRLIK-ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDR 265 (430)
Q Consensus 226 ~~~p~~i~-~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~ 265 (430)
....+. ......|..++.. ....+....+|.|+.|-..
T Consensus 166 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 166 --AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp --EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred --ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 000110 0112246555553 3445555678999999643
No 76
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.26 E-value=43 Score=30.53 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=123.1
Q ss_pred cceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccc--eeeCccCCCceEEEEeCC-----cceEEEE
Q 014122 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACGG-----AHTLFLT 87 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p--~~v~~~~~~~I~~i~~G~-----~~~~~lt 87 (430)
+.|....+..+..+..++..+++|++|..-..+ |........-.| ..++..++++|+.+.... ...+++|
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T 116 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYD---LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLAT 116 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEc
Confidence 345555555666666666677899999876443 222211222223 234444678899887654 3578899
Q ss_pred CCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEE--EEcCCCeEEEEEcCCcEEEEecC--CCCCCCCCCCCCc
Q 014122 88 ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKN--SNGQLGLGKKAAK 163 (430)
Q Consensus 88 ~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~--i~~G~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~ 163 (430)
++|.+.-.-...+.... ..-..-..+.. .+.++. +..+.++.+++|++|++|.+-.. .-...|.......
T Consensus 117 ~~G~iKr~~l~~~~~~~-----r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~ 190 (327)
T 3uc1_A 117 RNGLVKKSKLTDFDSNR-----SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ 190 (327)
T ss_dssp TTSEEEEEEGGGGCCCC-----SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE
T ss_pred CCCEEEEeEHHHhhccc-----cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee
Confidence 99988876543322100 00011111111 223443 34477889999999999999877 4444443222211
Q ss_pred ccccceEEeccCCceEEEEecCC--ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEE
Q 014122 164 VIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVK 241 (430)
Q Consensus 164 ~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~ 241 (430)
.+..-.+.+|+.+..-. .+.+++|+.|.+.-.-...+-..+++... . .-..+..- +..++
T Consensus 191 ------~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-~----------~~~~l~~~-~d~lv 252 (327)
T 3uc1_A 191 ------GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-V----------LTVMYDRR-RGRLV 252 (327)
T ss_dssp ------SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-E----------ESSCCCTT-TCSEE
T ss_pred ------eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-E----------EEEEecCC-CCeEE
Confidence 12222456677766543 36778888987776544333222221110 0 00001000 11233
Q ss_pred EE--EeCCCeEEEEecCCcEEEEecCCCCccc
Q 014122 242 IA--AAGFLHSACIDENGRVYIFGDRAVDKML 271 (430)
Q Consensus 242 ~i--~~g~~~~~~lt~~g~vy~wG~~~~gqlg 271 (430)
.+ ..+....++++++|++..+-...-..+|
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred EEEEeCCCccEEEEcCCCeEEEEehhhccccC
Confidence 32 2356788899999999888655544443
No 77
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=76.94 E-value=46 Score=30.67 Aligned_cols=125 Identities=11% Similarity=-0.031 Sum_probs=53.3
Q ss_pred ceEEEEeCC---cceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEE
Q 014122 72 SLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (430)
Q Consensus 72 ~I~~i~~G~---~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~ 146 (430)
.+..++... ...+.-..||.|..|-......+..- .........-...|..++.. ....+.-..+|.|..
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-----DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-----C------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-----cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 355555543 33444567888888854321110000 00000001122356666553 345566677899999
Q ss_pred EecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc--eeEEEEcCCcEEEeec
Q 014122 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (430)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~ 203 (430)
|-................... ..+. -....|..++...+ +.+.-..+|.|+.|-.
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCE-VTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEC---------------CEE-EEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EECCCCCCcccccCCCCCcce-EEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 975432211100000000000 0011 11224555655433 3444567899999954
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=75.91 E-value=51 Score=30.63 Aligned_cols=154 Identities=7% Similarity=-0.103 Sum_probs=73.9
Q ss_pred cccceeeeEEEeccCCcEEEEEEcC--CCCccCCCCCCCcccce-eeCcc---CCCceEEEEeC----CcceEEEECCCC
Q 014122 22 SKLGICKRWISSTLQRRFAALWGNG--DYGRLGLGSLESRWRPV-VCSAF---EKHSLKALACG----GAHTLFLTETGC 91 (430)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~wG~n--~~G~LG~~~~~~~~~p~-~v~~~---~~~~I~~i~~G----~~~~~~lt~~G~ 91 (430)
++.......+.+.+.++.|.+|-.. ..|++-.. ....+. .+..- ....+..+..- ....+.-..||.
T Consensus 117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 193 (437)
T 3gre_A 117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF---LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSR 193 (437)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE---EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSE
T ss_pred EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec---cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCe
Confidence 3333344556666788899998643 11211000 000000 11100 22345555422 445566677888
Q ss_pred EEEEecCCCCccccCCCCCccccceEecc--CCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCccccc
Q 014122 92 VYATGLNDFGQLGISENIGYSLEPLRISG--LKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPI 167 (430)
Q Consensus 92 vy~wG~n~~g~lg~~~~~~~~~~p~~i~~--l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~ 167 (430)
|+.|-..... ....+.. -...|..++. .....+.-+.+|.|..|-... + .
T Consensus 194 i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~-------------~ 247 (437)
T 3gre_A 194 VIIFDIRTLE------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-N-------------V 247 (437)
T ss_dssp EEEEETTTCC------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-T-------------E
T ss_pred EEEEeCCCCe------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-c-------------c
Confidence 9998543211 1122221 1235666655 344566667889999996542 1 1
Q ss_pred ceE-EeccCCceEEEEecC----Cc--eeEEEEcCCcEEEeecC
Q 014122 168 PTK-VECLSGIFTKQAALG----FE--QSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 168 p~~-i~~~~~~~i~~i~~g----~~--~~~~lt~~g~v~~wG~n 204 (430)
+.. +.......|..++.. .+ ..+.-..+|.|..|-..
T Consensus 248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 111 111123356666322 22 33334568889999654
No 79
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=74.60 E-value=48 Score=31.03 Aligned_cols=98 Identities=8% Similarity=0.110 Sum_probs=59.5
Q ss_pred eEEEEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCC
Q 014122 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSN 152 (430)
Q Consensus 73 I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~ 152 (430)
|.+|++ ....+++..+|.|..|=..+..+ ...+..+...+.++..-....++++++|.|+.|--...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~------------~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE------------FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC------------EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc------------cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCC
Confidence 899999 77777777889999996543321 11112223345566555556888999999999965321
Q ss_pred CCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEe
Q 014122 153 GQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (430)
Q Consensus 153 gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~w 201 (430)
+ ..+ +. ..|..|+....-.++...+|++..|
T Consensus 157 -~-----------~~~--~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 157 -S-----------TKQ--LA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp -C-----------EEE--EE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred -c-----------ccc--cc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 1 011 11 2366666555555555566666665
No 80
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=74.33 E-value=53 Score=30.14 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=40.6
Q ss_pred CceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEE
Q 014122 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYM 146 (430)
Q Consensus 71 ~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~ 146 (430)
..|..++...+ ..+.-..||.|+.|-..... ....+..-...|..++. .....+.-..+|.|..
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 46778777544 34455678899999643211 12233333345666554 3445666678899999
Q ss_pred EecC
Q 014122 147 WGKN 150 (430)
Q Consensus 147 ~G~n 150 (430)
|-..
T Consensus 208 wd~~ 211 (420)
T 3vl1_A 208 WECG 211 (420)
T ss_dssp EETT
T ss_pred eECC
Confidence 9654
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=74.04 E-value=47 Score=29.36 Aligned_cols=201 Identities=9% Similarity=-0.044 Sum_probs=103.1
Q ss_pred CceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCC-eEEEEEcCCcEE
Q 014122 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYH-HSSAITVDGELY 145 (430)
Q Consensus 71 ~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~-~~~~lt~~G~vy 145 (430)
..|..++...+ ..++-..||.|++|-..... ....+..+......|..++. ... ..+.-..+|.|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA---------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT---------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC---------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 35777776543 34445678999999654221 01112222233445666554 344 677777899999
Q ss_pred EEec-CCCCCCCCCCCCCcccccceEEec-cCCceEEEEecC-CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccc
Q 014122 146 MWGK-NSNGQLGLGKKAAKVIPIPTKVEC-LSGIFTKQAALG-FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (430)
Q Consensus 146 ~~G~-n~~gqlg~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g-~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~ 222 (430)
.|-. .. +++ ..+.. .....|..++.. ....+....+|.|+.|-...... ...
T Consensus 83 ~wd~~~~-~~~-------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~-------- 137 (342)
T 1yfq_A 83 KVDLIGS-PSF-------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVI-------- 137 (342)
T ss_dssp EECSSSS-SSE-------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCE--------
T ss_pred EEEeccC-Cce-------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccc--------
Confidence 9965 32 111 11111 012235444433 45566667899999994321000 000
Q ss_pred cccccCcceeecccCccEEEEEeCCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeee--cCCCCeeeEEee---C
Q 014122 223 STSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI--SKLPYSEEVVCG---G 297 (430)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i--~~~~~i~~v~~G---~ 297 (430)
.....+..... ....|..++......++.+.++.|+.|-....+. ...... .....+..++.. .
T Consensus 138 -~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 138 -AVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp -EEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGG
T ss_pred -cccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCC
Confidence 00001100001 1235777777777767778899999997543111 001111 111245555553 3
Q ss_pred CeEEEEEcCCCEEEEeCCC
Q 014122 298 YHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 298 ~~~~~l~~~g~v~~wG~n~ 316 (430)
...++-..+|.+..|-...
T Consensus 207 ~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp CEEEEEETTSEEEEEECCT
T ss_pred CEEEEEecCCcEEEEEEcC
Confidence 4555667788888887654
No 82
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.77 E-value=51 Score=29.19 Aligned_cols=215 Identities=12% Similarity=-0.043 Sum_probs=115.0
Q ss_pred CCceEEEEeC--CcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc---CCCeEEEEEcCCcE
Q 014122 70 KHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGEL 144 (430)
Q Consensus 70 ~~~I~~i~~G--~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~---G~~~~~~lt~~G~v 144 (430)
+..+..+... .++.+++|++|++|.--........ .. . . +. -.++|+.+.+ .....+++|++|.+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~-----~~--~-l-l~-~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS-----KV--S-L-KS-REEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE-----EC--C-C-SS-TTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc-----cc--c-c-CC-CCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 3445555433 4458899999999986432211000 00 0 1 22 2348888765 23578999999999
Q ss_pred EEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEec--CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccc
Q 014122 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (430)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~ 222 (430)
...-...+-+-. . -...+..-.+..++.+.. +..+.+++|++|++|.+-...--.+|+...-
T Consensus 93 Kr~~l~~~~~~~-----~----G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G------- 156 (276)
T 3no0_A 93 KKIPLAEFEYKA-----Q----GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG------- 156 (276)
T ss_dssp EEEEGGGTTTCS-----T----TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-------
T ss_pred EEEEHHHhhhhc-----C----CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-------
Confidence 887654432100 0 000111113344554443 4556889999999999977665555543221
Q ss_pred cccccCcceeecccCccEEEEEeC--CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEE--eeCC
Q 014122 223 STSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV--CGGY 298 (430)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~--~G~~ 298 (430)
.. .+...++..|+.+... ..+.+++|++|.+...-...+.....+....... .....+..+. .+..
T Consensus 157 --v~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i----~~~~~lv~~~~~~~~~ 226 (276)
T 3no0_A 157 --VQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS----GTKDTLVDLIPIKEEV 226 (276)
T ss_dssp --EE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC----CSSSCEEEEEEESSEE
T ss_pred --EE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE----cCCCcEEEEEEeCCCC
Confidence 00 1222223456655432 3467788999988877554433322211110000 1112343332 3456
Q ss_pred eEEEEEcCCCEEE--EeCCCCCCC
Q 014122 299 HTCVLTSGGELYT--WGSNENGCL 320 (430)
Q Consensus 299 ~~~~l~~~g~v~~--wG~n~~gqL 320 (430)
..++++++|++.. +-.++--.+
T Consensus 227 ~i~~~t~~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 227 ELLITTKNGKAFYDKINQKDIPLS 250 (276)
T ss_dssp EEEEEETTSCEEEEEEEGGGSCBC
T ss_pred EEEEEcCCCeEEEeeeCHHHCCCc
Confidence 7888999999988 765543333
No 83
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=72.54 E-value=83 Score=31.56 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=35.9
Q ss_pred CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC-CeeeE----EeeCCeEE-EEEcCCCEEEEeCCCCC
Q 014122 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEV----VCGGYHTC-VLTSGGELYTWGSNENG 318 (430)
Q Consensus 248 ~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~-~i~~v----~~G~~~~~-~l~~~g~v~~wG~n~~g 318 (430)
.+.+++..+|+||.+|-...+.. .........+....... ....+ ..-.+|++ ++..+|+||..|.+.++
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 45666677999999985433221 01111111222211111 11111 12356764 45679999999987654
No 84
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=72.23 E-value=57 Score=29.57 Aligned_cols=231 Identities=14% Similarity=0.036 Sum_probs=109.6
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCC----Cccccee----eCccCCCceEEEEeCCc-ceEEEECCCCEEEEecCC
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLE----SRWRPVV----CSAFEKHSLKALACGGA-HTLFLTETGCVYATGLND 99 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~----~~~~p~~----v~~~~~~~I~~i~~G~~-~~~~lt~~G~vy~wG~n~ 99 (430)
...+..+.||++.+.+.+...++-.+... ....|.. ........|.+|+...+ ..+.-..||.|.+|=...
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDE 112 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECT
T ss_pred EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccC
Confidence 33444558888888777655555332110 0011110 00001224777775544 344456788899995432
Q ss_pred CCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEecc--C
Q 014122 100 FGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL--S 175 (430)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~--~ 175 (430)
... ..........-...|..|+. -..+.+.-..+|.|..|-.... ..+..+ -
T Consensus 113 ~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----------------~~~~~~~~h 168 (344)
T 4gqb_B 113 NET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----------------VVLSSYRAH 168 (344)
T ss_dssp TSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCC
T ss_pred CCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEEcCc
Confidence 111 10111111112335666654 3345556678899999964321 111111 1
Q ss_pred CceEEEEecCCc---eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceee-cccCccEEEEEeC---CC
Q 014122 176 GIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK-ELEGVKVKIAAAG---FL 248 (430)
Q Consensus 176 ~~~i~~i~~g~~---~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g---~~ 248 (430)
...|..++...+ ..+.-..||.|..|-......+ ..+. ......+..++.. ..
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--------------------~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA--------------------SQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE--------------------EECC----CCCEEEEEECSSCTT
T ss_pred CCceEEEEecCCCCCceeeecccccccccccccccee--------------------eeeecceeeccceeeeecCCCCc
Confidence 234666665433 2334467899999953211000 0010 1111134444432 22
Q ss_pred eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCC-CCeeeEEeeC---CeEEEEEcCCCEEEEeC
Q 014122 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKL-PYSEEVVCGG---YHTCVLTSGGELYTWGS 314 (430)
Q Consensus 249 ~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~-~~i~~v~~G~---~~~~~l~~~g~v~~wG~ 314 (430)
..+.-..||.|..|-.... + ....+... ..|..++... ...+.-..||.|..|-.
T Consensus 229 ~l~sg~~dg~v~~wd~~~~-~----------~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKST-S----------CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp EEEEEETTSEEEEEESCC-------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred ceEEeccCCcEEEEECCCC-c----------EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 3333467889999954321 1 11222222 2477776542 33444678999999953
No 85
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=68.31 E-value=62 Score=28.40 Aligned_cols=187 Identities=10% Similarity=-0.049 Sum_probs=91.9
Q ss_pred ceEEEEeCCcceEE--EECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEE--EEcCCCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGAHTLF--LTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~~~~~--lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~--i~~G~~~~~~lt~~G~vy~~ 147 (430)
.|..|+...+...+ -..||.|..|-.... .....+..-...+.. ++......+.-..++.|..|
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 57777776554433 345888999954321 111222222223333 34445566677788999999
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc--eeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccc
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~ 225 (430)
-.... + ....+.. ....|..|+...+ ..+.-..||.|..|-......
T Consensus 83 d~~~~-~------------~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------- 131 (304)
T 2ynn_A 83 NYNTG-E------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------- 131 (304)
T ss_dssp ETTTC-C------------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred ECCCC-c------------EEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence 65421 1 1111111 1224555655433 444456789999995421100
Q ss_pred ccCcceeecccCccEEEEEeCC---CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeec-CC-CCeeeEEee----
Q 014122 226 EYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KL-PYSEEVVCG---- 296 (430)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~-~~-~~i~~v~~G---- 296 (430)
....+.. ....|..++... ...+.-..||.|..|-...... ...+. .. ..+..+...
T Consensus 132 --~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 132 --LEQTFEG-HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp --EEEEECC-CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----------SEEEECCCTTCEEEEEECCSTT
T ss_pred --hhhhhcc-cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----------cceeccCCcCcEEEEEEEEcCC
Confidence 0001111 112466665532 3444556789999996432110 11111 11 123333321
Q ss_pred CCeEEEEEcCCCEEEEeCC
Q 014122 297 GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 297 ~~~~~~l~~~g~v~~wG~n 315 (430)
..+.+.-..||.|..|-..
T Consensus 198 ~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CCEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEeCC
Confidence 2244556678999999754
No 86
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=67.86 E-value=73 Score=29.07 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=33.9
Q ss_pred EEEEEeC--CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEe--eCCeEEEEEcCCCEEEEeC
Q 014122 240 VKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCVLTSGGELYTWGS 314 (430)
Q Consensus 240 i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~--G~~~~~~l~~~g~v~~wG~ 314 (430)
|..++.. ..+.+.-..||.|..|-.....++..-...... .......|..++. .....++-..+|.|+.|-.
T Consensus 252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR---NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS---SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc---cccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 4444433 334444567899999975542222110000000 0001112344433 3445555667889999864
No 87
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=66.81 E-value=74 Score=28.74 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=52.1
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC----cceEEEECCCCEEEEecCCCCcc
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG----AHTLFLTETGCVYATGLNDFGQL 103 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~----~~~~~lt~~G~vy~wG~n~~g~l 103 (430)
...+++.+.++.|.+|-... +++ ...+.. ....|..++... ...+.-..||.|+.|-.....
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~-~~~----------~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-- 231 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVES-GQL----------LQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-- 231 (354)
T ss_dssp SSEEEEEETTSEEEEEETTT-CCE----------EEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--
T ss_pred CCEEEEEeCCCcEEEEeCCC-CeE----------EEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 33556667888888886433 110 011111 122455555432 344445678999999543211
Q ss_pred ccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecC
Q 014122 104 GISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 104 g~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n 150 (430)
....+..-...|..++. .....+.-..||.|..|-..
T Consensus 232 ----------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 232 ----------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 11122222335666664 34455666788999999653
No 88
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=66.61 E-value=95 Score=29.93 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=87.2
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (430)
.|..++...+ ..+.-..+|.|..|-.+. + ....+......|..++.. ....+.-..++.|+.|
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~-----------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--Q-----------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTC--C-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCCC--C-----------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence 4666665433 344456778888884321 1 111222223456666543 3455666788899998
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--CceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccc
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~ 225 (430)
-.+ +++ ...+.. ....|..++.. ....+.-..++.|..|-.+. +
T Consensus 413 ~~~--~~~------------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~----------------- 458 (577)
T 2ymu_A 413 NRN--GQL------------LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--Q----------------- 458 (577)
T ss_dssp CTT--CCE------------EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--C-----------------
T ss_pred eCC--CCE------------EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--C-----------------
Confidence 432 111 011111 12245555443 23344456788899984311 0
Q ss_pred ccCcceeecccCccEEEEEeCCC--eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEee--CCeE
Q 014122 226 EYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG--GYHT 300 (430)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G--~~~~ 300 (430)
....+... ...|..++...+ ..+.-..|+.|+.|-.. +++ ...+.. ...|..++.. ..+.
T Consensus 459 --~~~~~~~~-~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 --LLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp --EEEEEECC-SSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEECCSSCEEEEEECTTSSCE
T ss_pred --EEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEeCCCCCEEEEEEcCCCCEE
Confidence 00011111 124555554433 33334678889998532 111 111222 2246666543 2344
Q ss_pred EEEEcCCCEEEEe
Q 014122 301 CVLTSGGELYTWG 313 (430)
Q Consensus 301 ~~l~~~g~v~~wG 313 (430)
+.-..||.|..|-
T Consensus 524 ~s~~~dg~v~lwd 536 (577)
T 2ymu_A 524 ASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEECcCEEEEEe
Confidence 4556788898884
No 89
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=66.41 E-value=70 Score=28.32 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=53.9
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccC--CCceEEEEeCCcc--eEEEECCCCEEEEecCCCCccc
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE--KHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~--~~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg 104 (430)
.++.+.+.|+.|.+|-..... .....++..+. ...|..++...+. .+.-..||.|.+|-....
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~---------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~---- 97 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDD---------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG---- 97 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEET---------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred cEEEEecCCccEEEecCCCCC---------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----
Confidence 466677789999999643211 11112222222 2356666655443 334456788888854221
Q ss_pred cCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEec
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~ 149 (430)
.....+..-...|..++.. ....+.-..||.|..|-.
T Consensus 98 --------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 98 --------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp --------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred --------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 1122233233466666553 344555667899999964
No 90
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=62.64 E-value=98 Score=28.70 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=72.7
Q ss_pred CceEEE--EeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC-----CCeEEEEEcCCc
Q 014122 71 HSLKAL--ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGE 143 (430)
Q Consensus 71 ~~I~~i--~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G-----~~~~~~lt~~G~ 143 (430)
..+..+ +.+..+.+++|+.|++|-+-...-...+.............+. -.++|+.+..- ..+.+++|++|.
T Consensus 46 D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 124 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGT 124 (370)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 345443 4455668889999999998755433322221111111111111 23477777653 347899999998
Q ss_pred EEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEE--EecCCceeEEEEcCCcEEEeecCCCCCCCCC
Q 014122 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (430)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~ 212 (430)
+.-.-...+-... ..... -..+. .+.+++. +..+....+++|++|++..+-...-..+|+.
T Consensus 125 vKrt~l~e~~~~~----~~G~~--ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 125 VKKTPLSEFAFRL----ARGKI--AINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp EEEEEGGGGCSCC----TTCEE--SSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred EEEeEHHHhhccc----CCceE--EEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 8877654432211 00000 00111 1223333 3346678999999999999877665555554
No 91
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=61.90 E-value=87 Score=27.82 Aligned_cols=172 Identities=11% Similarity=0.058 Sum_probs=80.5
Q ss_pred EEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCC
Q 014122 84 LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKA 161 (430)
Q Consensus 84 ~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~ 161 (430)
+.-..+|.|..|...... ....+..-...+..++. -....+.-..+|.|+.|-... ++
T Consensus 138 ~~g~~dg~v~i~~~~~~~------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~------- 197 (321)
T 3ow8_A 138 ATGTHVGKVNIFGVESGK------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GK------- 197 (321)
T ss_dssp EEECTTSEEEEEETTTCS------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TE-------
T ss_pred EEEcCCCcEEEEEcCCCc------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-Cc-------
Confidence 334556777777543211 11222222234555544 334555666788888886432 10
Q ss_pred CcccccceEEeccCCceEEEEecCCc--eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCcc
Q 014122 162 AKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVK 239 (430)
Q Consensus 162 ~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~ 239 (430)
....+.. ....|..++...+ ..+.-..+|.|..|-...... ...+... ...
T Consensus 198 -----~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~--------------------~~~~~~h-~~~ 250 (321)
T 3ow8_A 198 -----LLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL--------------------AGTLSGH-ASW 250 (321)
T ss_dssp -----EEEEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE--------------------EEEECCC-SSC
T ss_pred -----EEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce--------------------eEEEcCC-CCc
Confidence 0011111 1123444544333 344445688899985421100 0011111 123
Q ss_pred EEEEEeC--CCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeec-CCCCeeeEEeeC--CeEEEEEcCCCEEEEe
Q 014122 240 VKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGG--YHTCVLTSGGELYTWG 313 (430)
Q Consensus 240 i~~i~~g--~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~-~~~~i~~v~~G~--~~~~~l~~~g~v~~wG 313 (430)
|..++.. ..+.+.-..|+.|..|-......+ ..+. ....|..++... ...+....||.|..|-
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-----------~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV-----------HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE-----------EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 5555543 334555577899999964321110 1111 112455555432 3444556778888774
No 92
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=61.40 E-value=90 Score=27.85 Aligned_cols=225 Identities=10% Similarity=-0.019 Sum_probs=100.9
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
...++.+.+.|+.|.+|-.... .....++. ....|..++.... ..+.-..|+.+..|-.....
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~-----------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~--- 130 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTT-----------NKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE--- 130 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTC-----------CEEEEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---
T ss_pred CCCEEEEEeCCCcEEEEECCCC-----------CcceEeec-CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---
Confidence 3445666678888888853321 11111111 1224555554433 23334567778887543210
Q ss_pred cCCCCCccccceEeccCCCcEEEEEc-CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEe
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~ 183 (430)
........+..-...|..+.. .....+.-..+|.|..|-.... + ....+.. ....|..++
T Consensus 131 -----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~------------~~~~~~~-h~~~v~~~~ 191 (340)
T 1got_B 131 -----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-Q------------QTTTFTG-HTGDVMSLS 191 (340)
T ss_dssp -----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT-E------------EEEEECC-CSSCEEEEE
T ss_pred -----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC-c------------EEEEEcC-CCCceEEEE
Confidence 000111122222223443332 2334555667888888864321 0 0011111 122455555
Q ss_pred cCCc--eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC--CCeEEEEecCCcE
Q 014122 184 LGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRV 259 (430)
Q Consensus 184 ~g~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v 259 (430)
...+ ..+.-..+|.|..|-..... ....+.. ....|..++.. ....+.-..||.|
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~--------------------~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGM--------------------CRQTFTG-HESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCS--------------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCe--------------------eEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 4433 34444568999999542110 0001111 11245555543 3344455678899
Q ss_pred EEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEee--CCeEEEEEcCCCEEEEeC
Q 014122 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGS 314 (430)
Q Consensus 260 y~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G--~~~~~~l~~~g~v~~wG~ 314 (430)
..|-......+-.-. .+ .....|..++.. ....++-..+|.|..|-.
T Consensus 251 ~iwd~~~~~~~~~~~-----~~---~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 251 RLFDLRADQELMTYS-----HD---NIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEETTTTEEEEEEC-----CT---TCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEECCCCcEEEEEc-----cC---CcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 999654321110000 00 001134444433 234444567788888864
No 93
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=61.17 E-value=58 Score=25.60 Aligned_cols=108 Identities=16% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCceEEEEeCC-cceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC-CCeEEEEEcCCcEEEE
Q 014122 70 KHSLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYMW 147 (430)
Q Consensus 70 ~~~I~~i~~G~-~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G-~~~~~~lt~~G~vy~~ 147 (430)
....+++-|-. .+.+-+..||.|-.-..... . ..-..+......++.|.|- ..+.+++..+|+||..
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~----------~-~s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRSD----------T-HIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTTC----------G-GGCEEEEEEETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCCC----------C-ceEEEEEEccCCEEEEEEecCCEEEeECCCCCEeec
Confidence 34678888875 66777889999886543211 1 1111111112256777764 5778899999999974
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEE
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 200 (430)
-.- ..+....-...+......|+.+..|+ .+|++++|++|.
T Consensus 98 ~~~----------t~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RDR----------SDTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp CCT----------TCGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred ccC----------CCCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 221 11111111112223344556665655 899999999995
No 94
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=60.68 E-value=86 Score=27.41 Aligned_cols=232 Identities=11% Similarity=0.021 Sum_probs=114.8
Q ss_pred eeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC--CcceEEEECCCCEEE
Q 014122 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYA 94 (430)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G--~~~~~~lt~~G~vy~ 94 (430)
+.+..+++.....++++.+.++.|.+|=... + .....+.. ....|..++.. ....+.-..|+.|.+
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-~----------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYET-Q----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTT-T----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCC-C----------ceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 3445556666667777778899999996432 1 11111111 12245554443 333444567888999
Q ss_pred EecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEe
Q 014122 95 TGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE 172 (430)
Q Consensus 95 wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~ 172 (430)
|-.... .....+..-...|..|+.. ....+.-..||.|..|-..... .+....
T Consensus 82 wd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-------------~~~~~~ 136 (304)
T 2ynn_A 82 FNYNTG------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTF 136 (304)
T ss_dssp EETTTC------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------------EEEEEE
T ss_pred EECCCC------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------------chhhhh
Confidence 854321 1122233333466666653 3455566788999999643210 111111
Q ss_pred ccCCceEEEEecCC---ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEe----
Q 014122 173 CLSGIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA---- 245 (430)
Q Consensus 173 ~~~~~~i~~i~~g~---~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---- 245 (430)
.-....|..++... ...+.-..||.|..|-...... ...+.......+..+..
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFTLTTGQERGVNYVDYYPLP 196 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--------------------SEEEECCCTTCEEEEEECCST
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--------------------cceeccCCcCcEEEEEEEEcC
Confidence 11223456665432 3445556799999995422100 00111111112333322
Q ss_pred CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEeeCC--eEEEEEcCCCEEEEeCCC
Q 014122 246 GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 246 g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G~~--~~~~l~~~g~v~~wG~n~ 316 (430)
...+.+.-..|+.|..|-...... ...+.. ...|..++.... ..+.-..||.|..|-...
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~~-----------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKSC-----------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTEE-----------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEcCCCeEEEEeCCCCcc-----------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 123455567889999996433111 111111 123555544332 334456789999997543
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=60.30 E-value=1.1e+02 Score=28.32 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=78.3
Q ss_pred CceEEEEeCC-c--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEE
Q 014122 71 HSLKALACGG-A--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELY 145 (430)
Q Consensus 71 ~~I~~i~~G~-~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy 145 (430)
..|..|+... + ..+.-..||.|.+|-..... . .....+.........|..++.. ....+.-..+|.|.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~------~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEII------V-GEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH------T-TCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccc------c-CcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 3577777665 3 33344568889888542200 0 0001111111133467776653 45566777889999
Q ss_pred EEecC--CCCCCCCCCCCCcccccceEEecc------CCceEEEEec----CCceeEEEEcCCcEEEeecCCCCCCCCCC
Q 014122 146 MWGKN--SNGQLGLGKKAAKVIPIPTKVECL------SGIFTKQAAL----GFEQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (430)
Q Consensus 146 ~~G~n--~~gqlg~~~~~~~~~~~p~~i~~~------~~~~i~~i~~----g~~~~~~lt~~g~v~~wG~n~~gqlg~~~ 213 (430)
.|-.. ..+++-. ......+..+ ....+..+.. .....+.-+.+|.|+.|-.....
T Consensus 137 vwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------ 203 (437)
T 3gre_A 137 VLKVNHYQQESEVK-------FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE------ 203 (437)
T ss_dssp EEEEEEEEETTEEE-------EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC------
T ss_pred EEEeccccCCceee-------ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------
Confidence 99653 1121100 0000011100 2233444442 23455556778999999542210
Q ss_pred CCccccccccccccCcceeecc-cCccEEEEEeC--CCeEEEEecCCcEEEEecC
Q 014122 214 ESSILGFLRSTSEYTPRLIKEL-EGVKVKIAAAG--FLHSACIDENGRVYIFGDR 265 (430)
Q Consensus 214 ~~~~~~~~~~~~~~~p~~i~~~-~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~~ 265 (430)
....+... ....|..++.. ....+.-..+|.|..|-..
T Consensus 204 --------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 204 --------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp --------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred --------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 00111110 12256666553 3445556788999999654
No 96
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=60.20 E-value=1e+02 Score=27.98 Aligned_cols=221 Identities=10% Similarity=-0.020 Sum_probs=110.2
Q ss_pred EEeCCcceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC-----CCeEEEEEcCCcEEEEecC
Q 014122 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 76 i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G-----~~~~~~lt~~G~vy~~G~n 150 (430)
++...+..+++|+.|++|..-...-...+..........-..+. -.++|+.+..- ..+.+++|++|.+.-.-..
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 45567788999999999998765433333211111111111111 12367765432 3368899999988877644
Q ss_pred CCCCCCCCCCCCcccccceE-EeccCCceEEE--EecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCcccccccccccc
Q 014122 151 SNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (430)
Q Consensus 151 ~~gqlg~~~~~~~~~~~p~~-i~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~ 227 (430)
.+-.... ..... +....+..++. +..+.++.+++|++|+++.+-.+.--.+|+...-.
T Consensus 125 e~~~~~r--------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV----------- 185 (323)
T 1wp5_A 125 HYKAQRY--------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV----------- 185 (323)
T ss_dssp GGCCSCC--------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE-----------
T ss_pred Hhhhccc--------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE-----------
Confidence 3321110 00000 01112233433 33467789999999999999876654455422100
Q ss_pred CcceeecccCccEEEEEe--CCC-eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCC-CeeeE--EeeCCeEE
Q 014122 228 TPRLIKELEGVKVKIAAA--GFL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEV--VCGGYHTC 301 (430)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~--g~~-~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~-~i~~v--~~G~~~~~ 301 (430)
+.+...++..|+.+.. ... ..+.++++|..-..-...+-..+.+. .-...+...+.-. .+..+ ..+.+..+
T Consensus 186 --~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~-kGv~~~~~~~~~~~~l~~~~~v~~~~~i~ 262 (323)
T 1wp5_A 186 --KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK-RGVVILRELKANPHRISGFVVAQDSDTIY 262 (323)
T ss_dssp --ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS-CCEECSCCCSSSCCCEEEEEEECTTCEEE
T ss_pred --EEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC-CCEECeeecCCCCceEEEEEEeCCCCeEE
Confidence 1111122334554432 122 56667777765444333321111111 1111122221111 33322 23467788
Q ss_pred EEEcCCCEEEEeCCCCCC
Q 014122 302 VLTSGGELYTWGSNENGC 319 (430)
Q Consensus 302 ~l~~~g~v~~wG~n~~gq 319 (430)
+++++|++.-.-.++-..
T Consensus 263 ~it~~g~~ir~~~~~i~~ 280 (323)
T 1wp5_A 263 LQTEKSFIETIKVGDIRF 280 (323)
T ss_dssp EEETTSCEEEEEGGGSCB
T ss_pred EEeCCCeEEEEEhhhcCc
Confidence 899999988776555333
No 97
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=59.11 E-value=1e+02 Score=27.72 Aligned_cols=227 Identities=9% Similarity=-0.008 Sum_probs=118.0
Q ss_pred cceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC-----CcceEEEECC
Q 014122 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG-----GAHTLFLTET 89 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G-----~~~~~~lt~~ 89 (430)
+.|..+.+.....+..++..+++|.+|..-..+--..+..... ......+...++..|+.+... ..+.+++|++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 4455555555555555555668899888765542111111100 111123444466788887654 3457889999
Q ss_pred CCEEEEecCCCCcc-ccCCCCCccccceEeccCCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccc
Q 014122 90 GCVYATGLNDFGQL-GISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIP 166 (430)
Q Consensus 90 G~vy~wG~n~~g~l-g~~~~~~~~~~p~~i~~l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~ 166 (430)
|.++-.-...+... +.+ ..-..+.. .+.++.+. .+..+.+++|++|.+..+-.......|........
T Consensus 124 G~~kr~~l~~~~~~r~~G------~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~-- 194 (312)
T 1suu_A 124 GKIARFESTDFKAVKSRG------VIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCG-- 194 (312)
T ss_dssp SEEEEEEGGGGCC----C------EECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEEC--
T ss_pred CeEEEEEHHHhhccCCCc------EEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEe--
Confidence 99998865543211 000 11112221 23555544 35678999999999999887655444432222111
Q ss_pred cceEEeccCCceEEEEec--CCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEE--
Q 014122 167 IPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI-- 242 (430)
Q Consensus 167 ~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~-- 242 (430)
+....+..++.+.. ...+.++++++|.+...-...+-..+++..-.. ... +.......++.
T Consensus 195 ----i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~----------~~~-~~k~~~~~lv~~~ 259 (312)
T 1suu_A 195 ----MKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYT----------SYK-KSDKKAGSVVDAI 259 (312)
T ss_dssp ----CCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----------CSC-TTCTTTCSEEEEE
T ss_pred ----EEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE----------eeE-ccCCCCCeEEEEE
Confidence 11112445555433 345678889999988887766655554332110 000 00000112322
Q ss_pred EEeCCCeEEEEecCCcEEEEecCC
Q 014122 243 AAAGFLHSACIDENGRVYIFGDRA 266 (430)
Q Consensus 243 i~~g~~~~~~lt~~g~vy~wG~~~ 266 (430)
........++++++|.+...-...
T Consensus 260 ~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 260 AVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EECTTCEEEEEETTCEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEccc
Confidence 123556677788888776654433
No 98
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=58.79 E-value=96 Score=27.32 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=11.6
Q ss_pred ceeEEEEcCCcEEEeec
Q 014122 187 EQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~ 203 (430)
.|++++. +++||++|-
T Consensus 161 ~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEeC
Confidence 4565555 789999975
No 99
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=58.49 E-value=1e+02 Score=27.69 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=101.2
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
...++.+.+.|+.|.+|-.... .....+.. ....|..++.... ..+.-..|+.+..|-.....
T Consensus 75 d~~~l~s~s~Dg~v~vWd~~~~-----------~~~~~~~~-~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~--- 139 (354)
T 2pbi_B 75 DKRRIVSSSQDGKVIVWDSFTT-----------NKEHAVTM-PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK--- 139 (354)
T ss_dssp TSSEEEEEETTSEEEEEETTTC-----------CEEEEEEC-SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT---
T ss_pred CCCEEEEEeCCCeEEEEECCCC-----------CcceEEec-CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc---
Confidence 3456666778888888853221 11111111 1123444443332 23333446666666432211
Q ss_pred cCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEE
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i 182 (430)
..........+..-...|..++. .....+.-..+|.|..|-.... ++ . ..+.. ....|..+
T Consensus 140 ---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~-----------~-~~~~~-h~~~v~~~ 202 (354)
T 2pbi_B 140 ---NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QL-----------L-QSFHG-HGADVLCL 202 (354)
T ss_dssp ---TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CE-----------E-EEEEC-CSSCEEEE
T ss_pred ---cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eE-----------E-EEEcC-CCCCeEEE
Confidence 01111112222222334555544 3345666678899999965321 10 0 11111 11234444
Q ss_pred ec--CC--ceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeC--CCeEEEEecC
Q 014122 183 AL--GF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDEN 256 (430)
Q Consensus 183 ~~--g~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~ 256 (430)
+. .. ...+.-..+|.|..|-..... ....+.. ....|..++.. ....+.-..|
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--------------------~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQ--------------------CVQAFET-HESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCC--------------------EEEEECC-CSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCc--------------------EEEEecC-CCCCeEEEEEeCCCCEEEEEeCC
Confidence 33 21 344555679999999542110 0001111 11245555543 3444455678
Q ss_pred CcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEee--CCeEEEEEcCCCEEEEeC
Q 014122 257 GRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGS 314 (430)
Q Consensus 257 g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G--~~~~~~l~~~g~v~~wG~ 314 (430)
+.|..|-......+..-... .....+..+... ....++-..++.|..|-.
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~--------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKE--------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp SCEEEEETTTTEEEEEECCT--------TCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCCcEEEEEcCC--------CcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 99999965432111000000 001123333332 334444557888888864
No 100
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=58.23 E-value=1.2e+02 Score=28.10 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=36.4
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (430)
.|..++.... +.+.-..|+.|..|-..... ....+..-...+..+... ....+.-..+|.|..|
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~------------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 5777766533 44455678899999643211 111122222344444432 3345555678888888
Q ss_pred ecC
Q 014122 148 GKN 150 (430)
Q Consensus 148 G~n 150 (430)
-..
T Consensus 262 d~~ 264 (410)
T 1vyh_C 262 VVA 264 (410)
T ss_dssp ETT
T ss_pred ECC
Confidence 643
No 101
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=57.41 E-value=64 Score=28.39 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=12.3
Q ss_pred CCeEEEEEcCCCEEEEeCC
Q 014122 297 GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 297 ~~~~~~l~~~g~v~~wG~n 315 (430)
..|++++. +++||..|-.
T Consensus 239 ~~~~~~~~-~~~i~v~GG~ 256 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAGF 256 (306)
T ss_dssp SCCEEEEE-TTEEEEEECB
T ss_pred cceeEEEE-CCEEEEEeCc
Confidence 44555554 7899999853
No 102
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=57.31 E-value=1.1e+02 Score=27.56 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=92.2
Q ss_pred eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCc-cCCCceEEEEeCC---cceEEEECCCCEEEEecCCCCccc
Q 014122 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSA-FEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~-~~~~~I~~i~~G~---~~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
.++.+.+.++.|.+|=.... .....+.. -....|..++... ...+.-..||.|..|-... .
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~--- 151 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S--- 151 (383)
T ss_dssp TEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C---
T ss_pred CEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C---
Confidence 45555556777777754421 11111211 1234678887754 3455567789999996532 0
Q ss_pred cCCCCCccccceEecc---CCCcEEEEE--cCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceE
Q 014122 105 ISENIGYSLEPLRISG---LKKEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~---l~~~i~~i~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i 179 (430)
....+.. ....|..++ ......+.-..+|.|+.|-.. ++ . ...+. .....|
T Consensus 152 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~-----------~-~~~~~-~h~~~v 207 (383)
T 3ei3_B 152 ---------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH-----------E-IFKEK-LHKAKV 207 (383)
T ss_dssp ---------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC-----------E-EEEEE-CSSSCE
T ss_pred ---------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC-----------E-EEEec-cCCCcE
Confidence 1111111 112344443 345566777888999999752 11 0 01111 122346
Q ss_pred EEEecCCc---eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC---CeEEEE
Q 014122 180 KQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACI 253 (430)
Q Consensus 180 ~~i~~g~~---~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~l 253 (430)
..++...+ ..+.-..++.|..|-....... ..+..... ....|..++... ...+..
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------------~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-----------------NSYIAEMP-HEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-----------------TCEEEEEE-CSSCEEEEEECTTTSCEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-----------------cceEEEec-CCCceEEEEEcCCCCCEEEEE
Confidence 66665444 3444567889999954321100 00111111 122566666543 455556
Q ss_pred ecCCcEEEEecCC
Q 014122 254 DENGRVYIFGDRA 266 (430)
Q Consensus 254 t~~g~vy~wG~~~ 266 (430)
..+|.|+.|-...
T Consensus 270 ~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 270 DQRNEIRVYSSYD 282 (383)
T ss_dssp ESSSEEEEEETTB
T ss_pred cCCCcEEEEECCC
Confidence 7789999997544
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=56.42 E-value=1.1e+02 Score=27.43 Aligned_cols=206 Identities=12% Similarity=0.114 Sum_probs=101.1
Q ss_pred CCceEEEEeCC---cceEEEECCCCEEEEecCCCCccccCCCCCccccce-Ee-----ccCCCcEEEEEc---CCCeEEE
Q 014122 70 KHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL-RI-----SGLKKEVVQIST---GYHHSSA 137 (430)
Q Consensus 70 ~~~I~~i~~G~---~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~-~i-----~~l~~~i~~i~~---G~~~~~~ 137 (430)
...|..++... ...+.-..||.|.+|-......... ....+. .. ......|..++. +....+.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-----YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-----EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-----EeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 34688887754 3444556799999996543221110 000000 00 112336777765 4446667
Q ss_pred EEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC-----ceeEEEEcCCcEEEeecCCCCCCCCC
Q 014122 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGHG 212 (430)
Q Consensus 138 lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~wG~n~~gqlg~~ 212 (430)
-..+|.|..|-.... .....+.. ...+..+.... ...++-..+|.|+.|-......
T Consensus 118 ~~~d~~i~iwd~~~~-------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---- 178 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL-------------QTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC---- 178 (408)
T ss_dssp EETTSEEEEEETTTT-------------EEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC----
T ss_pred EeCCCeEEEeeCCCC-------------ccceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce----
Confidence 778999999965421 01111111 11233333322 1455567789999996532110
Q ss_pred CCCccccccccccccCcceeecccCccEEEEEeCCC---eEEEEecCCcEEEEecCCCCccccC----CCCCCCCCe-e-
Q 014122 213 QESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQ----EGNHARRPS-L- 283 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~~~~gqlg~~----~~~~~~~p~-~- 283 (430)
...+.. ....|..++.... ..+.-..+|.|+.|-.......-.. .......+. .
T Consensus 179 ----------------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 179 ----------------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp ----------------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred ----------------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 011111 1124656655433 2445678899999976442211100 000000000 0
Q ss_pred ecCCCCeeeEEee--CCeEEEEEcCCCEEEEeCCC
Q 014122 284 ISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 284 i~~~~~i~~v~~G--~~~~~~l~~~g~v~~wG~n~ 316 (430)
......|..++.. ..+.++...+|.|..|-...
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 1111246666554 33556677899999998654
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=56.24 E-value=99 Score=26.70 Aligned_cols=109 Identities=10% Similarity=-0.047 Sum_probs=55.4
Q ss_pred ceEEEEeCCcce--EEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEec
Q 014122 72 SLKALACGGAHT--LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (430)
Q Consensus 72 ~I~~i~~G~~~~--~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~ 149 (430)
.|..|+...... +.-..||.|..|-..... ....+..-...+..++......+.-..++.+..|-.
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~------------~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTE------------EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCce------------eEEEecCccceEEEeecCCCEEEEEecCCceEeeec
Confidence 577777665443 334578889999543211 111222222355555555555666666777776654
Q ss_pred CCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeec
Q 014122 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 150 n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~ 203 (430)
..... ......................+.+.-..+|.|..|-.
T Consensus 137 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 137 RVAEH-----------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp TSSSC-----------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred CCCce-----------eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 32110 01011111122223333344445666677899999954
No 105
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=54.49 E-value=1.8e+02 Score=29.10 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=54.7
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcce--EEEECCCCEEEEecCCCCcccc
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHT--LFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~--~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
..++.+.+.|+.|.+|-....... .......+.. -...|..|+...+.. +.-..||.|.+|-....
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~------~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----- 462 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKA------YGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----- 462 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTC------SCEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----
T ss_pred CCEEEEEeCCCcEEEEEccCCCcc------cccccceecC-CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-----
Confidence 346667778999999975432110 0000111111 113477776654433 33456788888854321
Q ss_pred CCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEec
Q 014122 106 SENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~ 149 (430)
.....+..-...|..++.. ....+.-..|+.|..|-.
T Consensus 463 -------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 463 -------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp -------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred -------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence 1122233233466666543 445666678899999953
No 106
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=53.19 E-value=1.3e+02 Score=27.09 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=96.4
Q ss_pred ceEEEEeCCc---ceEEEECCCCEEEEecCCCCccccCCCCCccccceEec--cCCCcEEEEEcCC---CeEEEEEcCCc
Q 014122 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTGY---HHSSAITVDGE 143 (430)
Q Consensus 72 ~I~~i~~G~~---~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~--~l~~~i~~i~~G~---~~~~~lt~~G~ 143 (430)
.|..++.... ..+.-..||.|.+|-..... ....+. .-...|..++... ...+.-..+|.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 5777766544 34445567888888543211 111121 1234677766533 45666678899
Q ss_pred EEEEecCCCCCCCCCCCCCcccccceEEeccC--CceEEEEe--cCCceeEEEEcCCcEEEeecCCCCCCCCCCCCcccc
Q 014122 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS--GIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (430)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~--~~~i~~i~--~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~ 219 (430)
|..|-... . ....+.... ...|..++ ......+.-..+|.|+.|-.. ++
T Consensus 143 i~iwd~~~-~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~----------- 195 (383)
T 3ei3_B 143 TTLRDFSG-S-------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH----------- 195 (383)
T ss_dssp EEEEETTS-C-------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC-----------
T ss_pred EEEEECCC-C-------------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC-----------
Confidence 99996541 0 001111111 12244443 334455566778999999541 00
Q ss_pred ccccccccCcceeecccCccEEEEEeCCC---eEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCeeeEEee
Q 014122 220 FLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCG 296 (430)
Q Consensus 220 ~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i~~v~~G 296 (430)
....+.. ....|..++.... ..+.-..|+.|..|-....... ......+.....|..++..
T Consensus 196 --------~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~v~~~~~s 259 (383)
T 3ei3_B 196 --------EIFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------NSYIAEMPHEKPVNAAYFN 259 (383)
T ss_dssp --------EEEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------TCEEEEEECSSCEEEEEEC
T ss_pred --------EEEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------cceEEEecCCCceEEEEEc
Confidence 0001111 1124666655443 4445567889999965431100 0001111223356666654
Q ss_pred C---CeEEEEEcCCCEEEEeCCC
Q 014122 297 G---YHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 297 ~---~~~~~l~~~g~v~~wG~n~ 316 (430)
. ...++...+|.|..|-...
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTB
T ss_pred CCCCCEEEEEcCCCcEEEEECCC
Confidence 3 4555566789999997654
No 107
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=52.54 E-value=1.3e+02 Score=26.82 Aligned_cols=107 Identities=7% Similarity=-0.044 Sum_probs=55.2
Q ss_pred ceEEEEeCCcceE--EEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGAHTL--FLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~~~~--~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (430)
.|..++...+..+ .-..||.|..|-.... .....+..-...|..++.. ....+.-..+|.|..|
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREG------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC------------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCC------------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 5777776654433 3456888988854321 1112222223356666543 4455666778999999
Q ss_pred ecCCCCCCCCCCCCCcccccceEEecc-CCceEEEEecCC--ceeEEEEcCCcEEEeec
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECL-SGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~-~~~~i~~i~~g~--~~~~~lt~~g~v~~wG~ 203 (430)
-...... . ..+... ....|..++... ...++-..+|.|..|-.
T Consensus 254 d~~~~~~------------~-~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 254 DLRADQE------------L-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp ETTTTEE------------E-EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ECCCCcE------------E-EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 6532110 0 011100 111355554433 34455567889999954
No 108
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=50.29 E-value=1.3e+02 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=14.7
Q ss_pred cEEEEEeCCCeEEEEecC-Cc-EEEEe
Q 014122 239 KVKIAAAGFLHSACIDEN-GR-VYIFG 263 (430)
Q Consensus 239 ~i~~i~~g~~~~~~lt~~-g~-vy~wG 263 (430)
++.-........++++.+ |+ +|.++
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 455444445567777777 66 45555
No 109
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=48.42 E-value=1.4e+02 Score=26.04 Aligned_cols=26 Identities=8% Similarity=0.293 Sum_probs=16.0
Q ss_pred eEEEEecCCc--eeEEEEcCCcEEEeec
Q 014122 178 FTKQAALGFE--QSVAVTGGGKVLSWGA 203 (430)
Q Consensus 178 ~i~~i~~g~~--~~~~lt~~g~v~~wG~ 203 (430)
.|..|+...+ ..+.-..||.|..|-.
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 4666654433 3444467899999954
No 110
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=48.36 E-value=1.2e+02 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=10.9
Q ss_pred eEEEEEcCCCEEEEeC
Q 014122 299 HTCVLTSGGELYTWGS 314 (430)
Q Consensus 299 ~~~~l~~~g~v~~wG~ 314 (430)
..++++.+|+||.-..
T Consensus 237 ~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEEECTTCCEEEEEG
T ss_pred eeEEECCCCCEEEEEC
Confidence 4567777888887543
No 111
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=47.20 E-value=1.6e+02 Score=26.33 Aligned_cols=154 Identities=6% Similarity=-0.073 Sum_probs=77.8
Q ss_pred eccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccC--CCceEEEEeCCc--ceEEEECCCCEEEE
Q 014122 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFE--KHSLKALACGGA--HTLFLTETGCVYAT 95 (430)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~--~~~I~~i~~G~~--~~~~lt~~G~vy~w 95 (430)
..++......++.+.+.++.|++|-.... .+..+..+. ...|..++...+ ..+.-..||.|++|
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGN------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETT------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCC------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34444444556666667888888865431 112222222 235777776543 44555678899998
Q ss_pred ecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEec
Q 014122 96 GLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173 (430)
Q Consensus 96 G~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~ 173 (430)
-..... .......+......|..++.. ....+.-..+|.|+.|-...... ......+..
T Consensus 83 d~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~ 143 (377)
T 3dwl_C 83 EKRPDG---------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----------WWVSKHLKR 143 (377)
T ss_dssp ---------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------------CCCCEEECS
T ss_pred EcCCCC---------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----------ceeeeEeec
Confidence 543211 001112222233467776653 44566777889999986432110 001122221
Q ss_pred cCCceEEEEecCCc--eeEEEEcCCcEEEeecC
Q 014122 174 LSGIFTKQAALGFE--QSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 174 ~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~n 204 (430)
.....|..++...+ ..+.-..+|.|..|-..
T Consensus 144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp SCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 12334666665433 44555678999999754
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=45.22 E-value=1.9e+02 Score=26.73 Aligned_cols=208 Identities=12% Similarity=0.028 Sum_probs=100.3
Q ss_pred ceEEEEeCCc---ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEc---CCCeEEEEEcCCcEE
Q 014122 72 SLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELY 145 (430)
Q Consensus 72 ~I~~i~~G~~---~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~---G~~~~~~lt~~G~vy 145 (430)
.|..|+.... ..+.-..+|.|++|-......... ..........+..-...+..++- +....+.-..+|.|.
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 4667766543 334446689999997654211100 00001111222222334444443 233566667789999
Q ss_pred EEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC---CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccc
Q 014122 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (430)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~ 222 (430)
.|-.+...... ....+..........|..|+.. ....+....+|.|+.|-......
T Consensus 208 vwd~~~~~~~~-------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 208 LWDINATPKEH-------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------- 266 (430)
T ss_dssp EEETTSCCBGG-------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred EEeCCCCCCCC-------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence 99865422110 0111111111123346666653 33445556799999996542210
Q ss_pred cccccCcceeecccCccEEEEEeCC---CeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeec-CCCCeeeEEeeC-
Q 014122 223 STSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGG- 297 (430)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~-~~~~i~~v~~G~- 297 (430)
..+..........|..++... +..+.-..+|.|..|-.....+ ....+. ....|..+....
T Consensus 267 ----~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 267 ----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp ----SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEECCSSCEEEEEECSS
T ss_pred ----CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEeecCCCCEEEEEECCC
Confidence 011111111122455555543 2344456789999997543211 111122 122466665533
Q ss_pred --CeEEEEEcCCCEEEEeCCC
Q 014122 298 --YHTCVLTSGGELYTWGSNE 316 (430)
Q Consensus 298 --~~~~~l~~~g~v~~wG~n~ 316 (430)
...+.-..+|.|..|-...
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEeCCC
Confidence 2344456788999987654
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=44.50 E-value=3e+02 Score=28.79 Aligned_cols=104 Identities=9% Similarity=0.149 Sum_probs=59.0
Q ss_pred ccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc-ceEEEECCCCEEEEecCC
Q 014122 21 GSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA-HTLFLTETGCVYATGLND 99 (430)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~-~~~~lt~~G~vy~wG~n~ 99 (430)
.+++.....++.+.+.++.|++|.... ++ ...... ....|..|+.... ..+....|+.|.+|-...
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~-~~----------~~~~~~--~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQ-VE----------VVIKLE--DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTT-CE----------EEEECS--SCCCEEEEEEETTTEEEEEETTCEEEEEETTT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCC-cE----------EEEEcC--CCCCEEEEEEcCCCEEEEEECcCeEEEEECCC
Confidence 334444455667777899999996432 11 001111 2335777765433 356667899999996533
Q ss_pred CCccccCCCCCccccceEeccCCCcEEEEEc--CCCeEEEEEcCCcEEEEecC
Q 014122 100 FGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~--G~~~~~~lt~~G~vy~~G~n 150 (430)
...+ ..+. .+..|..++. .....+.-+++|.|..|-..
T Consensus 89 ~~~~------------~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 89 QKVL------------TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp CSEE------------EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred CcEE------------EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 1111 1111 2335666654 34456666789999999754
No 114
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=44.37 E-value=1.6e+02 Score=25.77 Aligned_cols=198 Identities=8% Similarity=-0.051 Sum_probs=94.4
Q ss_pred ceEEEEeCCcc--eEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC--CCeEEEEEcCCcEEEE
Q 014122 72 SLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (430)
Q Consensus 72 ~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G--~~~~~~lt~~G~vy~~ 147 (430)
.|..++...+. .+.-..||.|++|-.... .....+..-...|..++.. ....+....+|.|+.|
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 57777766443 334456889999954321 1122233233466666653 4566677789999999
Q ss_pred ecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--CceeEEEEcC-----CcEEEeecCCCCCCCCCCCCccccc
Q 014122 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGG-----GKVLSWGAGGSGRLGHGQESSILGF 220 (430)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~-----g~v~~wG~n~~gqlg~~~~~~~~~~ 220 (430)
-..... .-..+. ....+..++.. ....++...+ |.|+.|-.........-..
T Consensus 102 d~~~~~-------------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------ 160 (369)
T 3zwl_B 102 DVSNGQ-------------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------ 160 (369)
T ss_dssp ETTTCC-------------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------
T ss_pred ECCCCc-------------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------
Confidence 654211 001111 22234444433 3344445555 8888886543221110000
Q ss_pred cccccccCcceeecc-cCccEEEEEe--CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecC-CCCeeeEEee
Q 014122 221 LRSTSEYTPRLIKEL-EGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG 296 (430)
Q Consensus 221 ~~~~~~~~p~~i~~~-~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~-~~~i~~v~~G 296 (430)
........+... ....+..++. .....++...+|.|+.|-.....+. ...+.. ...|..++..
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 161 ---VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY----------VDSIDLHEKSISDMQFS 227 (369)
T ss_dssp ---ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE----------EEEEECCSSCEEEEEEC
T ss_pred ---cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe----------EEEEecCCCceeEEEEC
Confidence 000000011111 1113444433 3345555678889999965331111 111111 2245555543
Q ss_pred --CCeEEEEEcCCCEEEEeCC
Q 014122 297 --GYHTCVLTSGGELYTWGSN 315 (430)
Q Consensus 297 --~~~~~~l~~~g~v~~wG~n 315 (430)
....++...+|.|+.|-..
T Consensus 228 ~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 228 PDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp TTSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEecCCceEEEEECC
Confidence 3344455678888888643
No 115
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.14 E-value=1.8e+02 Score=26.21 Aligned_cols=230 Identities=13% Similarity=0.048 Sum_probs=116.4
Q ss_pred ccceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccc--eeeCccCCCceEEEEeCC-----cceEEE
Q 014122 14 LKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACGG-----AHTLFL 86 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p--~~v~~~~~~~I~~i~~G~-----~~~~~l 86 (430)
.+.|..+.+.....+..++..+++|.+|-.-..+--..+. ...-.| ..++..++.+|+.+..-. .+.+++
T Consensus 36 ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~ 112 (323)
T 1wp5_A 36 KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFV 112 (323)
T ss_dssp CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEE
Confidence 3455555555556666666666899999887655222221 122222 223334667788765433 247888
Q ss_pred ECCCCEEEEecCCCCccccCCCCCccccceEeccCC--CcEEE--EEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCC
Q 014122 87 TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA 162 (430)
Q Consensus 87 t~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~--~~i~~--i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~ 162 (430)
|++|.+--.-...+..... ......-.+. +.++. +..+.++.+++|++|+++.+-.+.....|......
T Consensus 113 T~~G~iKrt~l~e~~~~~r-------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV 185 (323)
T 1wp5_A 113 TRNGMVKKTELKHYKAQRY-------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV 185 (323)
T ss_dssp ETTSEEEEEEGGGGCCSCC-------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE
T ss_pred eCCCeEEEeEHHHhhhccc-------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE
Confidence 9999887765443321100 0111111121 24433 33477889999999999999877654444322111
Q ss_pred cccccceEEeccCCceEEEEec--CCc-eeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCcc
Q 014122 163 KVIPIPTKVECLSGIFTKQAAL--GFE-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVK 239 (430)
Q Consensus 163 ~~~~~p~~i~~~~~~~i~~i~~--g~~-~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~ 239 (430)
.. +..-.+.+|+.+.. ... ..+++|+.|.....-...+..-+++.. -...++.... .+..
T Consensus 186 ~~------i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k----------Gv~~~~~~~~-~~~~ 248 (323)
T 1wp5_A 186 KG------MNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR----------GVVILRELKA-NPHR 248 (323)
T ss_dssp EC------CCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC----------CEECSCCCSS-SCCC
T ss_pred EE------EEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC----------CEECeeecCC-CCce
Confidence 11 11113445555532 122 566677777655444433322222211 0111111111 1112
Q ss_pred EEE--EEeCCCeEEEEecCCcEEEEecCCCCcc
Q 014122 240 VKI--AAAGFLHSACIDENGRVYIFGDRAVDKM 270 (430)
Q Consensus 240 i~~--i~~g~~~~~~lt~~g~vy~wG~~~~gql 270 (430)
++. +..+....++++++|.+..+--..-...
T Consensus 249 l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~~~ 281 (323)
T 1wp5_A 249 ISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFS 281 (323)
T ss_dssp EEEEEEECTTCEEEEEETTSCEEEEEGGGSCBC
T ss_pred EEEEEEeCCCCeEEEEeCCCeEEEEEhhhcCcc
Confidence 332 2335677888999999887755443333
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=43.50 E-value=1.6e+02 Score=25.40 Aligned_cols=121 Identities=8% Similarity=-0.039 Sum_probs=65.9
Q ss_pred eccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCC----cceEEEECCCCEEEE
Q 014122 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG----AHTLFLTETGCVYAT 95 (430)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~----~~~~~lt~~G~vy~w 95 (430)
..+++.....++.+.+.++.|.+|=..... ....+..........|..|+... ...+.-..||.|.+|
T Consensus 15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDT--------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECSSS--------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred eEEEEcCCCCEEEEeeCCCeEEEEECCCCC--------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 333444455566677789999999754311 01111111111234688887653 345556778999999
Q ss_pred ecCCCCccccCCCCCccccceEeccCCCcEEEEEcC----CCeEEEEEcCCcEEEEecCC
Q 014122 96 GLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELYMWGKNS 151 (430)
Q Consensus 96 G~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G----~~~~~~lt~~G~vy~~G~n~ 151 (430)
-......... .........+......|..++.. ....+.-..+|.|+.|-...
T Consensus 87 d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 87 EEDPDQEECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EECTTSCTTS---SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred ecCCCccccc---ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 7654221000 00001122233334477777765 44677778899999997543
No 117
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=40.50 E-value=1.9e+02 Score=25.36 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=68.3
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcc--eEEEECCCCEEEEecCCCCccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~--~~~lt~~G~vy~wG~n~~g~lg 104 (430)
...++.+.+.|+.|.+|=... | .....+.. ....|..|+..... .+.-..||.|..|-....
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~-~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---- 139 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVAT-G----------ETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---- 139 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTT-T----------EEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC----
T ss_pred CCCEEEEEeCCCEEEEEECCC-C----------CeeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Confidence 344556666788888885432 1 11111111 12357777765443 333456888999854211
Q ss_pred cCCCCCccccceEeccCCCcEEEEEcCC--------CeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCC
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQISTGY--------HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSG 176 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~G~--------~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~ 176 (430)
....+..-...+..+.... ...+.-..++.|..|-..... ....+. -..
T Consensus 140 ---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------------~~~~~~-~h~ 196 (319)
T 3frx_A 140 ---------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-------------IEADFI-GHN 196 (319)
T ss_dssp ---------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-------------EEEEEC-CCC
T ss_pred ---------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-------------hheeec-CCC
Confidence 1111111222444444322 245555678999999654210 011111 112
Q ss_pred ceEEEEecCCc--eeEEEEcCCcEEEeec
Q 014122 177 IFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (430)
Q Consensus 177 ~~i~~i~~g~~--~~~~lt~~g~v~~wG~ 203 (430)
..|..++...+ ..+.-..+|.|..|-.
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 34555655433 3444467899999954
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=39.15 E-value=2.2e+02 Score=25.86 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=14.1
Q ss_pred ceEEEEeCCcceEEE--ECCCCEEEEec
Q 014122 72 SLKALACGGAHTLFL--TETGCVYATGL 97 (430)
Q Consensus 72 ~I~~i~~G~~~~~~l--t~~G~vy~wG~ 97 (430)
.|..++......+++ ..++.|+.|-.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 466666543333333 34677888854
No 119
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=38.58 E-value=1.7e+02 Score=24.43 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=10.2
Q ss_pred eEEEEEcCCCEEEEeC
Q 014122 299 HTCVLTSGGELYTWGS 314 (430)
Q Consensus 299 ~~~~l~~~g~v~~wG~ 314 (430)
..++++.+|.+|.-..
T Consensus 195 ~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEEECTTCCEEEEET
T ss_pred eEEEECCCCCEEEEEC
Confidence 3466777777776553
No 120
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=37.98 E-value=2e+02 Score=24.96 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=11.7
Q ss_pred ceeEEEEcCCcEEEeec
Q 014122 187 EQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~ 203 (430)
.|++++. +++||++|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 4666655 779999974
No 121
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=35.63 E-value=2.3e+02 Score=24.99 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=68.5
Q ss_pred eeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCcccc
Q 014122 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGI 105 (430)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~ 105 (430)
..++.+.+.|+.|.+|-.... + ....+.. -...|..|+...+ ..+.-..||.|..|-.........
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~-~----------~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTG-T----------TYKRFVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSS-C----------EEEEEEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred CCEEEEEcCCCcEEEEECCCC-c----------EEEEEcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence 345556667888888864321 0 0111111 1235777776544 344456789999996431111000
Q ss_pred CCCCCccccceEeccCCCcEEEEEcC------------CCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEec
Q 014122 106 SENIGYSLEPLRISGLKKEVVQISTG------------YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC 173 (430)
Q Consensus 106 ~~~~~~~~~p~~i~~l~~~i~~i~~G------------~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~ 173 (430)
.. .......+..+... ....+....+|.|..|-.+ ++ ....+..
T Consensus 156 ~~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~------------~~~~~~~ 211 (343)
T 2xzm_R 156 AE----------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQ------------IRYTFKA 211 (343)
T ss_dssp CT----------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TE------------EEEEEEC
T ss_pred ec----------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--Cc------------eeEEEcC
Confidence 00 00011133333322 1456677789999999632 11 0111111
Q ss_pred cCCceEEEEecCCc--eeEEEEcCCcEEEeec
Q 014122 174 LSGIFTKQAALGFE--QSVAVTGGGKVLSWGA 203 (430)
Q Consensus 174 ~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~ 203 (430)
....|..++...+ ..+.-..+|.|..|-.
T Consensus 212 -h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 212 -HESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred -ccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 1224555554433 4445567999999964
No 122
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=35.49 E-value=2.1e+02 Score=24.35 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=9.6
Q ss_pred eEEEEecCCcEEEEec
Q 014122 249 HSACIDENGRVYIFGD 264 (430)
Q Consensus 249 ~~~~lt~~g~vy~wG~ 264 (430)
..++++.+|++|.-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 3456666677666543
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=34.82 E-value=2.5e+02 Score=25.08 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=75.7
Q ss_pred ceEEEEeCCcceEEEECCCCEEEEecCCC-CccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEE--EcCCcEEEEe
Q 014122 72 SLKALACGGAHTLFLTETGCVYATGLNDF-GQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAI--TVDGELYMWG 148 (430)
Q Consensus 72 ~I~~i~~G~~~~~~lt~~G~vy~wG~n~~-g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~l--t~~G~vy~~G 148 (430)
.|..|....... ++..++.|++|-.... ..+. . +.. +..+..++. ...++. ..+|.|..|-
T Consensus 102 ~v~~v~~~~~~~-~~~~~~~i~i~d~~~~~~~~~---------~---~~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd 165 (355)
T 3vu4_A 102 PVKDLFLSREFI-VVSYGDVISVFKFGNPWKRIT---------D---DIR-FGGVCEFSN--GLLVYSNEFNLGQIHITK 165 (355)
T ss_dssp CEEEEEECSSEE-EEEETTEEEEEESSTTCCBSS---------C---CEE-EEEEEEEET--TEEEEEESSCTTCEEEEE
T ss_pred ceEEEEEcCCEE-EEEEcCEEEEEECCCCceeeE---------E---ecc-CCceEEEEc--cEEEEeCCCcCcEEEEEE
Confidence 588888776654 4445788999965432 1110 0 000 223444444 444443 5789999997
Q ss_pred cCCCCCCCCCCCC-Ccccccc-eEEeccCCceEEEEecCCce--eEEEEcCCc-EEEeecCCCCCCCCCCCCcccccccc
Q 014122 149 KNSNGQLGLGKKA-AKVIPIP-TKVECLSGIFTKQAALGFEQ--SVAVTGGGK-VLSWGAGGSGRLGHGQESSILGFLRS 223 (430)
Q Consensus 149 ~n~~gqlg~~~~~-~~~~~~p-~~i~~~~~~~i~~i~~g~~~--~~~lt~~g~-v~~wG~n~~gqlg~~~~~~~~~~~~~ 223 (430)
.....+.-..... ......| .....--...|..++...+. .+.-..||. |..|-.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~---------------- 229 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV---------------- 229 (355)
T ss_dssp CCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC----------------
T ss_pred CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc----------------
Confidence 6543211100000 0001112 12111123356666655443 344456887 9999653211
Q ss_pred ccccCcceee-cccCccEEEEEeCC--CeEEEEecCCcEEEEecCC
Q 014122 224 TSEYTPRLIK-ELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRA 266 (430)
Q Consensus 224 ~~~~~p~~i~-~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~~~ 266 (430)
....+. ......|..++... .+.+.-..|+.|..|-...
T Consensus 230 ----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 230 ----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred ----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 011111 10122466666543 3445556789999997543
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=33.50 E-value=3.7e+02 Score=26.64 Aligned_cols=162 Identities=11% Similarity=0.067 Sum_probs=82.7
Q ss_pred eeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeC--CcceEEEECCCCEEE
Q 014122 17 DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GAHTLFLTETGCVYA 94 (430)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G--~~~~~~lt~~G~vy~ 94 (430)
..+..++.......+.+.+.++.|.+|.... +|-.-. .. ...+...+..++.. +..-+.-..||.|-.
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~-------~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SK-------GNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CS-------SCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CC-------CccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 4445555555666666777899999996211 111100 00 00012247777654 445556677898988
Q ss_pred EecCCCCccccCCCCCccccceEe----ccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceE
Q 014122 95 TGLNDFGQLGISENIGYSLEPLRI----SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTK 170 (430)
Q Consensus 95 wG~n~~g~lg~~~~~~~~~~p~~i----~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~ 170 (430)
|-.... .+. +..+... ..+ .+-...|..|+-..+..++-..|+.|+.|-.....+ ...+..
T Consensus 156 Wd~~~~-~l~---~~~~i~l-~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~----------~~~~~t 220 (588)
T 2j04_A 156 FSIRKN-SEN---TPEFYFE-SSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH----------QPVSRM 220 (588)
T ss_dssp EECCCC-TTT---CCCCEEE-EEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS----------CCCEEE
T ss_pred EECCCC-ccc---cccceee-eeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc----------ccceee
Confidence 865431 100 0000001 111 111236777766544466677789999997543221 011112
Q ss_pred EeccCCceEEEEecCCceeEEEEcCCcEEEeecC
Q 014122 171 VECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 171 i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n 204 (430)
+.......|.+|+.. ...++.+.+++|..|-..
T Consensus 221 L~~~h~~~V~svaFs-g~~LASa~~~tIkLWd~~ 253 (588)
T 2j04_A 221 IQNASRRKITDLKIV-DYKVVLTCPGYVHKIDLK 253 (588)
T ss_dssp EECCCSSCCCCEEEE-TTEEEEECSSEEEEEETT
T ss_pred ecccccCcEEEEEEE-CCEEEEEeCCeEEEEECC
Confidence 221122345555553 356666678999999643
No 125
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.91 E-value=3e+02 Score=24.48 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=115.0
Q ss_pred cceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccc--eeeCccCCCceEEEEe-----CCcceEEEE
Q 014122 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALAC-----GGAHTLFLT 87 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p--~~v~~~~~~~I~~i~~-----G~~~~~~lt 87 (430)
+.|..+.+.....+..++..+++|.+|-.-..+--..+ ....-.| ..++..++.+|+.+.. ...+.+++|
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~---~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T 116 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT---RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 116 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCC---SSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCC---CCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 45555555556666666666689999988766522222 2222233 2233346677887754 223467789
Q ss_pred CCCCEEEEecCCCCccccCCCCCccccceEeccCC--CcEEEE--EcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCc
Q 014122 88 ETGCVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQI--STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK 163 (430)
Q Consensus 88 ~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~--~~i~~i--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 163 (430)
++|.+--.-...+.... ......-.+. +.++.+ ..+.+..+++|++|+++.+-.......|......
T Consensus 117 ~~G~~Krt~l~e~~~~~--------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv- 187 (307)
T 1zi0_A 117 ANGTVKKTVLTEFNRLR--------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV- 187 (307)
T ss_dssp TTSEEEEEEGGGGTTCC--------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE-
T ss_pred CCCeEEEEEHHHhhccc--------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe-
Confidence 99988766443221110 0111111121 244443 3467789999999999998776655444322111
Q ss_pred ccccceEEeccCCceEEEEecC--CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEE
Q 014122 164 VIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVK 241 (430)
Q Consensus 164 ~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~ 241 (430)
..+..-.+.+|+.+..- ....+++|+.|.+--.-...+-.-+++.. -...++ +..-+ ..++
T Consensus 188 -----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k----------G~~~~~-~~~~~-~~lv 250 (307)
T 1zi0_A 188 -----RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK----------GVISIK-VTERN-GLVV 250 (307)
T ss_dssp -----ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC----------CEESSC-CCTTT-CSEE
T ss_pred -----EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC----------CEEeeE-ecCCC-CeEE
Confidence 01222245567766532 23466777777765554333321122110 000111 11111 1344
Q ss_pred EEEe--CCCeEEEEecCCcEEEEecCCC
Q 014122 242 IAAA--GFLHSACIDENGRVYIFGDRAV 267 (430)
Q Consensus 242 ~i~~--g~~~~~~lt~~g~vy~wG~~~~ 267 (430)
.+.. .....+++|++|.+..+-...-
T Consensus 251 ~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 251 GAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 3332 4566888999999887755443
No 126
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=29.67 E-value=4.2e+02 Score=26.21 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=67.4
Q ss_pred eeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCc--ceEEEECCCCEEEEecCCCCccc
Q 014122 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLG 104 (430)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg 104 (430)
...++++.+.|+.|.+|=.... .....+.. -...|..|+...+ ..+.-..|+.|.+|-.......-
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAG-----------VSTRRFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCC-----------cceeEEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee
Confidence 3445556667788888854321 11111111 1235777776543 34445678899999432110000
Q ss_pred cCCCCCccccceEeccCCCcEEEEEcCC----CeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEE
Q 014122 105 ISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK 180 (430)
Q Consensus 105 ~~~~~~~~~~p~~i~~l~~~i~~i~~G~----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~ 180 (430)
.. .....-...|..+.... ...+.-..+|.|..|-.... + ....+.. ....|.
T Consensus 509 ~~---------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~------------~~~~~~~-h~~~v~ 565 (694)
T 3dm0_A 509 IS---------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-K------------LRSTLAG-HTGYVS 565 (694)
T ss_dssp EC---------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-C------------EEEEECC-CSSCEE
T ss_pred ec---------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-c------------EEEEEcC-CCCCEE
Confidence 00 00001112355554432 23555667899999965321 0 0011111 122455
Q ss_pred EEecCCc--eeEEEEcCCcEEEeec
Q 014122 181 QAALGFE--QSVAVTGGGKVLSWGA 203 (430)
Q Consensus 181 ~i~~g~~--~~~~lt~~g~v~~wG~ 203 (430)
.++...+ ..+.-..+|.|..|-.
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEET
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 5555433 3444456889999854
No 127
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=29.44 E-value=2.6e+02 Score=23.67 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=9.8
Q ss_pred EEEEEcCCCEEEEeC
Q 014122 300 TCVLTSGGELYTWGS 314 (430)
Q Consensus 300 ~~~l~~~g~v~~wG~ 314 (430)
.++++.+|++|.-..
T Consensus 211 ~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 211 GVGINSNGEILIADN 225 (286)
T ss_dssp EEEECTTCCEEEEEC
T ss_pred EEEECCCCCEEEEeC
Confidence 466667777776553
No 128
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=29.40 E-value=2.7e+02 Score=23.83 Aligned_cols=120 Identities=8% Similarity=-0.073 Sum_probs=65.2
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC----CCeEEEEEcCCcEE
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGELY 145 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G----~~~~~~lt~~G~vy 145 (430)
.|..|+...+ ..+.-..||.|.+|-..... ........+..-...|..++.. ....+.-..+|.|.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT--------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSS--------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC--------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 5777776543 34445668899999643211 1111122223334477777754 45666778899999
Q ss_pred EEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCC----ceeEEEEcCCcEEEeecC
Q 014122 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF----EQSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~wG~n 204 (430)
.|-.......... . ...+..........|..++... ...+....+|.|+.|-..
T Consensus 85 vwd~~~~~~~~~~---~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 85 LWEEDPDQEECSG---R--RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEECTTSCTTSS---C--SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEecCCCcccccc---c--CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 9986542211000 0 0111111112234577777654 356666789999999654
No 129
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=29.27 E-value=3.3e+02 Score=24.75 Aligned_cols=262 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred ceeeeccccceee--eEEEeccCCcEEEEEEcCC--------------CCccCCCCCCCcccce--------------ee
Q 014122 16 QDIKLGSKLGICK--RWISSTLQRRFAALWGNGD--------------YGRLGLGSLESRWRPV--------------VC 65 (430)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~wG~n~--------------~G~LG~~~~~~~~~p~--------------~v 65 (430)
...+..++..... ..+++.+.++.|.+|-... .-............|. .+
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Q ss_pred CccCCCceEEEEeC-CcceEEEECCCCEEEEecCCCCccccCCCCCccccceE--------eccCCCcEEEEEcCCCe--
Q 014122 66 SAFEKHSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLR--------ISGLKKEVVQISTGYHH-- 134 (430)
Q Consensus 66 ~~~~~~~I~~i~~G-~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~--------i~~l~~~i~~i~~G~~~-- 134 (430)
..-....|..++.. ....++...||.|..| +......+.. +......|..++.....
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iw------------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSADDLRINLW------------HLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEECSSEEEEE------------ETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred ccCCCcceEEEEEcCCCCEEEEeCCCeEEEE------------ECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Q ss_pred -EEEEEcCCcEEEEecCCCCC----CCCCCCCCcccccceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCC
Q 014122 135 -SSAITVDGELYMWGKNSNGQ----LGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRL 209 (430)
Q Consensus 135 -~~~lt~~G~vy~~G~n~~gq----lg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gql 209 (430)
.+.-..+|.|..|-...... +-.-.........+..........-..+.-...+.+.-.. |.|..|
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw-------- 311 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW-------- 311 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE--------
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE--------
Q ss_pred CCCCCCccccccccccccCcceeecccCccE-------------------EEEEeCCCeEEEEecCCcEEEEecCCCCcc
Q 014122 210 GHGQESSILGFLRSTSEYTPRLIKELEGVKV-------------------KIAAAGFLHSACIDENGRVYIFGDRAVDKM 270 (430)
Q Consensus 210 g~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i-------------------~~i~~g~~~~~~lt~~g~vy~wG~~~~gql 270 (430)
........+..+....- ...+....+.+.-..||.|+.|-......+
T Consensus 312 --------------d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 312 --------------DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp --------------ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred --------------eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Q ss_pred ccCCCCCCCCCeeecCCCC----------------------eeeEEee-CCeEEEEEcCCCEEEE
Q 014122 271 LFQEGNHARRPSLISKLPY----------------------SEEVVCG-GYHTCVLTSGGELYTW 312 (430)
Q Consensus 271 g~~~~~~~~~p~~i~~~~~----------------------i~~v~~G-~~~~~~l~~~g~v~~w 312 (430)
-.........+..+..... |..++-. ....+|+...+.+|.|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 378 TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeee
No 130
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=28.96 E-value=3.1e+02 Score=24.45 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=12.5
Q ss_pred CCeEEEEEcCCCEEEE
Q 014122 297 GYHTCVLTSGGELYTW 312 (430)
Q Consensus 297 ~~~~~~l~~~g~v~~w 312 (430)
....++.+.+|.||++
T Consensus 359 ~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 359 DGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTEEEEEBTTSCEEEE
T ss_pred CCEEEEEeCCCEEEEE
Confidence 5667778888888876
No 131
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=27.86 E-value=3e+02 Score=23.93 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=11.1
Q ss_pred ceEEEECCCCEEEEecC
Q 014122 82 HTLFLTETGCVYATGLN 98 (430)
Q Consensus 82 ~~~~lt~~G~vy~wG~n 98 (430)
|++ ...+++||++|-.
T Consensus 142 ~~~-~~~~~~iyv~GG~ 157 (315)
T 4asc_A 142 HTV-LSHMDLVYVIGGK 157 (315)
T ss_dssp CEE-EEETTEEEEECCB
T ss_pred eeE-EEECCEEEEEeCC
Confidence 444 4468899999854
No 132
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=27.54 E-value=3.6e+02 Score=24.75 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=73.0
Q ss_pred ceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccc--eeeCccCCCceEEEEeC-----CcceEEEEC
Q 014122 16 QDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACG-----GAHTLFLTE 88 (430)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p--~~v~~~~~~~I~~i~~G-----~~~~~~lt~ 88 (430)
.|....+.....|..++..+++|++|-.-..+--..|. ...-.| ..++..++.+|+.+..- ..+.+++|+
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~ 121 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATR 121 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEET
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeC
Confidence 45555555555555555566889999877554222221 122222 22333467788887654 235788999
Q ss_pred CCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEE--EEcCCCeEEEEEcCCcEEEEecCCCCCCCC
Q 014122 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (430)
Q Consensus 89 ~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~--i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (430)
+|.+--.-...+..... .-..-..+.. .+.++. +..+....+++|++|++..+-......+|.
T Consensus 122 ~G~vKrt~l~e~~~~~~-----~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 122 NGTVKKTPLSEFAFRLA-----RGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp TSEEEEEEGGGGCSCCT-----TCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCeEEEeEHHHhhcccC-----CceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 99887765444322110 0001111111 123333 334677899999999999886655444443
No 133
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=27.28 E-value=4.2e+02 Score=26.91 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=67.9
Q ss_pred EEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--CceeEEEEcCCcEEEeecCC
Q 014122 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGG 205 (430)
Q Consensus 128 i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n~ 205 (430)
.+...+..+++|+.|++|..-....... ...-.+....+..-.+.+|+.+.+. ..+.++.|++|.+.-.-...
T Consensus 510 ~~~t~d~ll~ft~~Gr~y~~~~~~lP~~-----~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~ 584 (716)
T 1zvu_A 510 KGKSNQPVVFVDSTGRSYAIDPITLPSA-----RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 584 (716)
T ss_dssp CCCSSSCEEEEETTSEEEEECTTTSCCC-----C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EecCCCEEEEEecCCcEEEEEeeecccc-----cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHH
Confidence 3446677899999999999866543221 1111222223333356678877765 33567778899888664332
Q ss_pred CCCCCCCCCCccccccccccccCcc-eeecccCccEEE---EEeCCCeEEEEecCCcEEEEecCCCCccc
Q 014122 206 SGRLGHGQESSILGFLRSTSEYTPR-LIKELEGVKVKI---AAAGFLHSACIDENGRVYIFGDRAVDKML 271 (430)
Q Consensus 206 ~gqlg~~~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~---i~~g~~~~~~lt~~g~vy~wG~~~~gqlg 271 (430)
+.. .. .... .+...++..++. +..+....++++++|++..|-...--.+|
T Consensus 585 ~~~---~~-------------~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 585 LVA---RN-------------RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp GCC---CS-------------TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred hcc---cC-------------ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 210 00 0010 111111222222 22367788899999999999766544443
No 134
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=25.91 E-value=3.2e+02 Score=23.55 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=69.0
Q ss_pred EEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC--CceeEEEEcCCcEEEeecCC
Q 014122 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGG 205 (430)
Q Consensus 128 i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG~n~ 205 (430)
.+.+.++.+++|+.|++|..-....... ... -.+....+....+.+|+.+... ..+.+++|++|.+.-.-...
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~~---r~~--G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPSA---RGQ--GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCCS---SSC--CEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCCc---CCC--CeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 3446778999999999999876543211 110 1112122333356678888763 34577789999888775543
Q ss_pred CCCCCCCCCCccccccccccccCcceeecccCccEEEE--E-eCCCeEEEEecCCcEEEEecCCCCcccc
Q 014122 206 SGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA--A-AGFLHSACIDENGRVYIFGDRAVDKMLF 272 (430)
Q Consensus 206 ~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i--~-~g~~~~~~lt~~g~vy~wG~~~~gqlg~ 272 (430)
+-....+.. ..+....+..++.+ . .+....+++|++|++..+-...-..+|.
T Consensus 115 ~~~~~r~G~---------------~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 115 LVARNRAGK---------------ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GCCCSTTCE---------------ECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred hcccCcCce---------------EEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 311110000 00000011122222 2 3567888999999999887665444443
No 135
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=25.67 E-value=3.1e+02 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.2
Q ss_pred EEEEEcCCcEEEE
Q 014122 135 SSAITVDGELYMW 147 (430)
Q Consensus 135 ~~~lt~~G~vy~~ 147 (430)
.++++.+|++|+.
T Consensus 119 ~i~~d~~G~l~vt 131 (296)
T 3e5z_A 119 DVCLAPDGSLWFS 131 (296)
T ss_dssp CEEECTTSCEEEE
T ss_pred CEEECCCCCEEEE
Confidence 4677888888886
No 136
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=25.27 E-value=2.2e+02 Score=25.14 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred ceEEEECC-CCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCC
Q 014122 82 HTLFLTET-GCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160 (430)
Q Consensus 82 ~~~~lt~~-G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 160 (430)
+.++++.+ |+||+.........-....................+..++... .+++..+|++|+...
T Consensus 199 ~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~----------- 265 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQ----------- 265 (329)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCS-----------
T ss_pred cEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccC-----------
Q ss_pred CCcccccceEEeccCCceEEEE------ecCCceeEEEEcCCcEEEeecCCC
Q 014122 161 AAKVIPIPTKVECLSGIFTKQA------ALGFEQSVAVTGGGKVLSWGAGGS 206 (430)
Q Consensus 161 ~~~~~~~p~~i~~~~~~~i~~i------~~g~~~~~~lt~~g~v~~wG~n~~ 206 (430)
......+-....-++... ....-+.++++.+|.||+......
T Consensus 266 ----~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 266 ----EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp ----CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred ----CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
No 137
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=24.85 E-value=3.9e+02 Score=24.15 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=7.5
Q ss_pred EcCCcEEEeec
Q 014122 193 TGGGKVLSWGA 203 (430)
Q Consensus 193 t~~g~v~~wG~ 203 (430)
..+++|+.|-.
T Consensus 322 ~~~~~v~v~d~ 332 (433)
T 3bws_A 322 MCCSKIEVYDL 332 (433)
T ss_dssp TTTTEEEEEET
T ss_pred cCCCEEEEEEC
Confidence 45778888854
No 138
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=24.15 E-value=4.2e+02 Score=24.27 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=36.5
Q ss_pred CceEEEEeCCc--ceEE-EECCCCEEEEecCCCCccccCCCCCccccceEec--cCCCcEEEEEcC---CCeEEEEEcCC
Q 014122 71 HSLKALACGGA--HTLF-LTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTG---YHHSSAITVDG 142 (430)
Q Consensus 71 ~~I~~i~~G~~--~~~~-lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~--~l~~~i~~i~~G---~~~~~~lt~~G 142 (430)
.+|..|+.... ..++ =..||.|.+|-.... ..+..+. .-...|..|+-. ....+.-..||
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~------------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK------------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCC------------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC------------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 35888887532 2333 367899999943221 1111121 112356666532 34455556788
Q ss_pred cEEEEec
Q 014122 143 ELYMWGK 149 (430)
Q Consensus 143 ~vy~~G~ 149 (430)
.|..|-.
T Consensus 188 ~v~iwd~ 194 (435)
T 4e54_B 188 TTRLQDF 194 (435)
T ss_dssp CEEEEET
T ss_pred EEEEeec
Confidence 8998854
No 139
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=24.07 E-value=3.6e+02 Score=23.45 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=11.3
Q ss_pred ceeEEEEcCCcEEEeec
Q 014122 187 EQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 187 ~~~~~lt~~g~v~~wG~ 203 (430)
.|++++. +++||++|-
T Consensus 189 ~~~~~~~-~~~iyv~GG 204 (315)
T 4asc_A 189 LFGATVH-DGRIIVAAG 204 (315)
T ss_dssp SCEEEEE-TTEEEEEEE
T ss_pred ceEEEEE-CCEEEEEec
Confidence 4555554 779999975
No 140
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.79 E-value=3.5e+02 Score=23.28 Aligned_cols=156 Identities=9% Similarity=-0.049 Sum_probs=79.9
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEE--EecCCceeEEEEcCCcEEEeecCCCCCCCCC
Q 014122 135 SSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (430)
Q Consensus 135 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~ 212 (430)
++++|++|.|-......++-. .+..-.+..++. .+.+.++.+++|+.|++|.+-...--.. .
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~--------------~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r- 68 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAP--------------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R- 68 (256)
T ss_dssp EEEEETTSEEEEEESSCCCST--------------TSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S-
T ss_pred EEEEeCCCEEEEeeCCcCCce--------------eccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C-
Confidence 567888888765543222100 011112333443 3445667899999999998865432110 0
Q ss_pred CCCccccccccccccCcceeecccCccEEEEEe--CCCeEEEEecCCcEEEEecCCCCccccCCCCCCCCCeeecCCCCe
Q 014122 213 QESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYS 290 (430)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~~i 290 (430)
. .-......+...++..|+.+.. ...+.+++|++|.+.-.-...+-...... ..-..+...+.+
T Consensus 69 -~---------~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G----~~~i~L~~~d~l 134 (256)
T 1zvt_A 69 -G---------QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG----KALITLPENAHV 134 (256)
T ss_dssp -S---------CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC----EECBCCCTTCCB
T ss_pred -C---------CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc----eEEEEECCCCEE
Confidence 0 0011111233334556777755 24457778999988876543321110000 000111111233
Q ss_pred eeE-E--eeCCeEEEEEcCCCEEEEeCCCCCCC
Q 014122 291 EEV-V--CGGYHTCVLTSGGELYTWGSNENGCL 320 (430)
Q Consensus 291 ~~v-~--~G~~~~~~l~~~g~v~~wG~n~~gqL 320 (430)
..+ . .+..+.+++|++|++.-+-.++--.+
T Consensus 135 v~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~ 167 (256)
T 1zvt_A 135 MPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 167 (256)
T ss_dssp CCCEECCCTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCc
Confidence 332 2 25678889999999998876654333
No 141
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=22.32 E-value=3.6e+02 Score=22.85 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=14.7
Q ss_pred cCCCeEEEEEcCCcEEEEecC
Q 014122 130 TGYHHSSAITVDGELYMWGKN 150 (430)
Q Consensus 130 ~G~~~~~~lt~~G~vy~~G~n 150 (430)
......+.-..+|.|..|-..
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESS
T ss_pred CCCCEEEEEecCcceeEEECC
Confidence 344566667788999999653
No 142
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.92 E-value=6.3e+02 Score=25.59 Aligned_cols=130 Identities=14% Similarity=0.055 Sum_probs=69.5
Q ss_pred cceeeeccccceeeeEEEeccCCcEEEEEEcCCCCccCCCCCCCcccc--eeeCccCCCceEEEEeC--CcceEEEECCC
Q 014122 15 KQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRP--VVCSAFEKHSLKALACG--GAHTLFLTETG 90 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p--~~v~~~~~~~I~~i~~G--~~~~~~lt~~G 90 (430)
..|....+..+..|..++..+++|++|.----+ |..+ ...-.| ..++..++++|..+... ..+.++.|++|
T Consensus 501 ~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~---lP~~--~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G 575 (716)
T 1zvu_A 501 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT---LPSA--RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAG 575 (716)
T ss_dssp ----CCEEECCCSSSCEEEEETTSEEEEECTTT---SCCC--C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTS
T ss_pred CCCeEEEEEEecCCCEEEEEecCCcEEEEEeee---cccc--cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCc
Confidence 334444444555566666666888888765433 2222 122222 22333467789888765 33567788889
Q ss_pred CEEEEecCCCCccccCCCCCccccceEeccCC--CcEEE---EEcCCCeEEEEEcCCcEEEEecCCCCCCCC
Q 014122 91 CVYATGLNDFGQLGISENIGYSLEPLRISGLK--KEVVQ---ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (430)
Q Consensus 91 ~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~--~~i~~---i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (430)
.+.-.-...+.. ........-.|. +.++. +..+..+.++++++|++..+-......+|.
T Consensus 576 ~vk~~~l~~~~~--------~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 576 YGFVCTFNDLVA--------RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp EEEEEEGGGGCC--------CSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred eEEEecHHHhcc--------cCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 887765433211 001111111122 12332 224678899999999999998776554444
No 143
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=21.77 E-value=4.4e+02 Score=23.69 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=54.3
Q ss_pred ceEEEEeCCc--ceEEEECCCCEEEEecCCCCccccCCCCCccccceEeccCCCcEEEEEcC---CCeEEEEEcCCcEEE
Q 014122 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYM 146 (430)
Q Consensus 72 ~I~~i~~G~~--~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~~p~~i~~l~~~i~~i~~G---~~~~~~lt~~G~vy~ 146 (430)
.|..++.... ..+.-..||.|..|-.... .....+. ....+..++.. ....+.-..+|.|..
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~i 233 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTT------------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEECCCC------------eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 5777766533 3444556888999943221 0111111 23345555442 345556677899999
Q ss_pred EecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecCCc--eeEEEEcCCcEEEeecC
Q 014122 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAG 204 (430)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~wG~n 204 (430)
|-... +++- . ....+.....-....|..++...+ +.+.-..+|.|..|-..
T Consensus 234 wd~~~-~~~~-----~-~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 234 WDSET-GFLV-----E-RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp EETTT-CCEE-----E-EEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCC-CcEE-----E-eecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 96432 1110 0 000000000011224556655433 44445678999999653
No 144
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=21.39 E-value=3.9e+02 Score=22.89 Aligned_cols=229 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred CcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEE---eCCcceEEEECCCCEEEEecCCCCccccCCCCCccc
Q 014122 37 RRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALA---CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSL 113 (430)
Q Consensus 37 ~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~---~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~~~~~~ 113 (430)
++.+|++| |.........-..+-.+...++..+. .......+...+++||++|-.. ......
T Consensus 14 ~~~i~~~G-------G~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~--------~~~~~~ 78 (301)
T 2vpj_A 14 NEVLLVVG-------GFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD--------GRSRLS 78 (301)
T ss_dssp CEEEEEEC-------CEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC--------SSCBCC
T ss_pred CCEEEEEe-------CccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC--------CCccCc
Q ss_pred cceEeccCCCc---EEEEEc---CCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCc--eEEEEecC
Q 014122 114 EPLRISGLKKE---VVQIST---GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI--FTKQAALG 185 (430)
Q Consensus 114 ~p~~i~~l~~~---i~~i~~---G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~--~i~~i~~g 185 (430)
.-..+...... ...+.. .+....+..-+++||++|-...... ...-.......+. ++..+-..
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~---------~~~~~~~d~~~~~W~~~~~~p~~ 149 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR---------HTSMERYDPNIDQWSMLGDMQTA 149 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCB---------CCEEEEEETTTTEEEEEEECSSC
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcc---------cceEEEEcCCCCeEEECCCCCCC
Q ss_pred CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEe---CCCeEEEEecCCcEEEE
Q 014122 186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA---GFLHSACIDENGRVYIF 262 (430)
Q Consensus 186 ~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~vy~w 262 (430)
.....+..-+++||++|-... .....-...-.+.......+.. ......+...+++||.+
T Consensus 150 r~~~~~~~~~~~iyv~GG~~~-----------------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 212 (301)
T 2vpj_A 150 REGAGLVVASGVIYCLGGYDG-----------------LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVV 212 (301)
T ss_dssp CBSCEEEEETTEEEEECCBCS-----------------SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred cccceEEEECCEEEEECCCCC-----------------CcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEE
Q ss_pred ecCCCCccccCCCCCCCCCeeecCCCC----eeeEEeeCCeEEEEEcCCCEEEEe
Q 014122 263 GDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWG 313 (430)
Q Consensus 263 G~~~~gqlg~~~~~~~~~p~~i~~~~~----i~~v~~G~~~~~~l~~~g~v~~wG 313 (430)
| |.........-.......+ +..+........+..-+++||..|
T Consensus 213 G-------G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 213 G-------GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp C-------CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred e-------CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
No 145
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=21.09 E-value=1.5e+02 Score=26.48 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=12.7
Q ss_pred CceeEEEEcCCcEEEeec
Q 014122 186 FEQSVAVTGGGKVLSWGA 203 (430)
Q Consensus 186 ~~~~~~lt~~g~v~~wG~ 203 (430)
..|++++ -+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3566666 6889999984
Done!