BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014125
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 145/342 (42%), Gaps = 49/342 (14%)
Query: 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGI 94
PL V P+ F T ++ + +K+SP+G +SS DK ++I+ +
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSS-----VKFSPNGEWLASSSADKLIKIWGAYDGKF 56
Query: 95 SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
++ L + D W +SD S + S + D + +WD
Sbjct: 57 EKTISGHKLG-----------------ISDVAW-----SSD--SNLLVSASDDKTLKIWD 92
Query: 155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213
++G T + + F FNP I +G +++SVR++DV + G+ + T
Sbjct: 93 VSSGKCLKTLKGHS-----NYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTGKCLK---T 143
Query: 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVQ 272
L + + +SA+ F+ + ++ SY I+ + + L L + V+ V+
Sbjct: 144 LPAHSDP----VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 198
Query: 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGG 331
FS +G Y+ D + WD K K Y ++ I + +G + + +G
Sbjct: 199 FSPNGKYIL-AATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
+D LV+I++LQT + + Q D V + HP + AS++
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 90
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 91 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 138
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G+ + TL + + +SA+ F+ ++
Sbjct: 139 PQSNLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFN-RDGSLIVSS 189
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 247
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V
Sbjct: 248 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 306
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 307 TACHPTENIIASAA 320
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 92
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 93 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 140
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G+ + TL + + +SA+ F+ ++
Sbjct: 141 PQSNLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFN-RDGSLIVSS 191
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 249
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V
Sbjct: 250 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 308
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 309 TACHPTENIIASAA 322
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 64
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 65 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 112
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++
Sbjct: 113 PQSNLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 163
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 221
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V
Sbjct: 222 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 280
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 281 TACHPTENIIASAA 294
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 77
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 78 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 125
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 126 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 176
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 233
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 294 HPTENIIASAA 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 69
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 70 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 117
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++
Sbjct: 118 PQSNLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 168
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 226
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V
Sbjct: 227 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 285
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 286 TACHPTENIIASAA 299
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 68
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 69 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 116
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++
Sbjct: 117 PQSNLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 167
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 225
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V
Sbjct: 226 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 285 TACHPTENIIASAA 298
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 74
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 75 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 122
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 123 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 173
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 230
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 291 HPTENIIASAA 301
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 46 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 88
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 89 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 136
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 137 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 187
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 244
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 245 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 304
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 305 HPTENIIASAA 315
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 71
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 72 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 119
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 120 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 170
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 227
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 288 HPTENIIASAA 298
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 32 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 74
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 75 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 122
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 123 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 173
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 230
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 291 HPTENIIASAA 301
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 74
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 75 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 122
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++
Sbjct: 123 PQSNLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 173
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 231
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V
Sbjct: 232 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 291 TACHPTENIIASAA 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 35 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 77
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 78 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 125
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 126 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 176
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 233
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 294 HPTENIIASAA 304
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G +SS DK ++I+ + ++ L + D
Sbjct: 34 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 76
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 77 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 124
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 125 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 175
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 232
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 233 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 292
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 293 HPTENIIASAA 303
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 134/311 (43%), Gaps = 44/311 (14%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+K+SP+G SS DK ++I+ + ++ L + D
Sbjct: 32 VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-----------------ISDV 74
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
W +SD S + S + D + +WD ++G T + + F FNP
Sbjct: 75 AW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFNPQS 122
Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
I +G +++SVR++DV + G+ + TL + + +SA+ F+ + ++ SY
Sbjct: 123 NLIVSGSFDESVRIWDV-KTGKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSSSYD 173
Query: 245 QTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK--CL 230
Query: 304 KLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
K Y ++ I + +G + + +G +D LV+I++LQT + + Q D V +
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 363 HPFLPMAASSS 373
HP + AS++
Sbjct: 291 HPTENIIASAA 301
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 146/345 (42%), Gaps = 45/345 (13%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-------------GISYDVNACSLAKDQDS 109
++G+ +SPDG + ++S+DKT+++++ G+++ + ++A D
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 78
Query: 110 YEASLVVTEGESVYDFCWFPHMS-----ASDPTSCVFASTTRDHPIHLWDATTGLLRCTY 164
L G+ + H S A P AS + D + LW+ LL+
Sbjct: 79 KTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 165 RAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223
+V + VAF+P G I A +K+V++++ R+ + TL G+ G
Sbjct: 137 GHSSSV------WGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWG 185
Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
+AFSP +A S +T ++ N +LL L G V V FS DG + +
Sbjct: 186 ----VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS- 238
Query: 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343
D + W+ + Q++ L S N + F P G+ + + D V +++ +
Sbjct: 239 ASDDKTVKLWN--RNGQLLQTLTGHSSSVN-GVAF--RPDGQTIASASDDKTVKLWN-RN 292
Query: 344 GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHL 388
G+ + + +V G +F P AS+S + + + HL
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 41/250 (16%)
Query: 65 GIKWSPDGSSFLTSSEDKTLRIF-------------SLPENGISYDVNACSLAKDQDSYE 111
G+ +SPDG + ++S+DKT++++ S G+++ + ++A D
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 112 ASLVVTEGESVYDF------CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR 165
L G+ + W S D T AS + D + LW+ LL+
Sbjct: 409 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT---IASASDDKTVKLWNRNGQLLQTLTG 465
Query: 166 AYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224
+V VAF+P G I A +K+V++++ R+ + TL G+ G
Sbjct: 466 HSSSV------RGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG- 513
Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
+AFSP +A S +T ++ N +LL L G V V FS DG + +
Sbjct: 514 ---VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIAS-A 567
Query: 285 RKDPYILCWD 294
D + W+
Sbjct: 568 SSDKTVKLWN 577
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 71
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 72 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 119
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G + TL + + +SA+ F+ + ++
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGMCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 170
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ D + WD K
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKGK- 228
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D +V+I++LQT + + Q D V
Sbjct: 229 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 288 TACHPTENIIASAA 301
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 135/314 (42%), Gaps = 44/314 (14%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
+ +K+SP+G +SS DK ++I+ + ++ L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----------------I 71
Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
D W +SD S + S + D + +WD ++G T + + F FN
Sbjct: 72 SDVAW-----SSD--SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----NYVFCCNFN 119
Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
P I +G +++SVR++DV + G + TL + + +SA+ F+ + ++
Sbjct: 120 PQSNLIVSGSFDESVRIWDV-KTGMCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 170
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
SY I+ + + L L + V+ V+FS +G Y+ + L WD K
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL-WDYSKGK- 228
Query: 301 VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359
K Y ++ I + +G + + +G +D +V+I++LQT + + Q D V
Sbjct: 229 -CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 360 FSFHPFLPMAASSS 373
+ HP + AS++
Sbjct: 288 TACHPTENIIASAA 301
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196
+C S++ D + LWD TG TY+ + V + +SVAF+P +I AG + +
Sbjct: 88 NCFAISSSWDKTLRLWDLRTG---TTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREI 142
Query: 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--- 253
+++++ K+S+ KE + +S + +SP + ++ A D
Sbjct: 143 KLWNILGEC----KFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196
Query: 254 -----NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY--KLY 306
N ++ Y E V H+ S +G Y+ TGG KD +L WD+ + + Y + +
Sbjct: 197 KVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDI---LNLTYPQREF 252
Query: 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343
+ NQ I F+ P + + G G V I++L T
Sbjct: 253 DAGSTINQ-IAFN--PKLQWVAVGTDQG-VKIFNLMT 285
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 64/270 (23%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY--------DVNACSLAKDQDSY- 110
N+F+ + S + ++SS DKTLR++ L G +Y +V + + + D
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 111 ---------------EASLVVTEGESVYDFC----WFPHMSASD---PTSCVFASTTRDH 148
E E E+ D+ + P M +++ P + FAS D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 149 PIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR---P 204
+ +W+ T +R T++A+++ V+ ++ + + + TG G +K + ++D+ P
Sbjct: 195 RLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATG-----GKDKKLLIWDILNLTYP 248
Query: 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSP--------THTGMLAIGSYSQTSAIYREDNME 256
R+F+ ST+ + IAF+P T G+ +Q+ A E
Sbjct: 249 QREFDAGSTI-----------NQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE 297
Query: 257 LLYVLHGQEGG---VTHVQFSRDGNYLYTG 283
+ GQ+G T + ++ G L+ G
Sbjct: 298 PITKAEGQKGKNPQCTSLAWNALGKKLFAG 327
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 17/205 (8%)
Query: 179 VAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
+A+NP GT + + G ++ +R++ G + + + EG + +A+SP
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIW-----GTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNY 75
Query: 238 LAIGSYSQTSAIYR--EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW-- 293
LA S+ T+ I++ +D+ E + L G E V V ++ GN L T R D + W
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-DKSVWVWEV 134
Query: 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI--SGFQ 351
D + V L + HT PS L + D V +Y + W+ + +
Sbjct: 135 DEEDEYECVSVL---NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 352 AAADTVNGFSFHPFLPMAASSSGHR 376
TV +F P AS S R
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDR 216
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEG 119
N +K + W+P G+ T S DK++ ++ + E +D YE S++ +
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDE---------------EDEYECVSVLNSHT 150
Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAF 177
+ V W P + AS + D + L+ C T +++ +
Sbjct: 151 QDVKHVVWHPSQE-------LLASASYDDTVKLYREEEDDWVCCATLEGHEST-----VW 198
Query: 178 SVAFNPTGTKIFAGY-NKSVRVFDVHRPGRD 207
S+AF+P+G ++ + +++VR++ + PG +
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 37/214 (17%)
Query: 68 WSPDGSSFLTSS-----EDKTLRIFSLPENG-----ISYDVNACSLAKDQDSYEASLVVT 117
W +G S++ S +T+R + G S+D C K+QD +E +
Sbjct: 43 WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE 102
Query: 118 EGES-VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA 176
E+ V W P + + A+ +RD + +W+ Y ++ T
Sbjct: 103 GHENEVKSVAWAPSGN-------LLATCSRDKSVWVWEVDEED---EYECVSVLNSHTQD 152
Query: 177 FS-VAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
V ++P+ + A Y+ +V+++ R+ E EG + ++AF P+
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLY------REEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 235 TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
LA S +T I+R+ L G E GV
Sbjct: 207 Q-RLASCSDDRTVRIWRQ-------YLPGNEQGV 232
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277
EG + +S +A S + G A+ S+ + ++ N + Y G V V FS D
Sbjct: 64 EGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGL 335
+ +GGR D + W+++ + ++ L R + HT+ PS + +GG D L
Sbjct: 122 RQIVSGGR-DNALRVWNVKG--ECMHTLSRGA-HTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 336 VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372
V ++DL TG+ ++ + + V + P + ASS
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASS 214
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 62/243 (25%)
Query: 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV 201
S + DH + LW+ G +C Y+ ++ SVAF+P +I +G + ++RV++V
Sbjct: 84 SASWDHSLRLWNLQNG--QCQYKFLGHTKDV---LSVAFSPDNRQIVSGGRDNALRVWNV 138
Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261
E TL ++ +S + FSP
Sbjct: 139 KG-----ECMHTL--SRGAHTDWVSCVRFSP----------------------------- 162
Query: 262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 321
S D + +GG D + WDL ++V L HTN +
Sbjct: 163 ------------SLDAPVIVSGGW-DNLVKVWDLATG-RLVTDL---KGHTNYVTSVTVS 205
Query: 322 PSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP--FLPMAASSSGHRRFP 379
P G + +DG+ ++DL G+ +S A A +N F P + AA+ G R F
Sbjct: 206 PDGSLCASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEKGIRIFD 264
Query: 380 VDD 382
+++
Sbjct: 265 LEN 267
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 39/181 (21%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLP-------ENGISYDVNACSLAKDQDSYEASLVVTE 118
+ +SPD ++ D LR++++ G D +C + S +A ++V+
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSC--VRFSPSLDAPVIVSG 172
Query: 119 G----ESVYDFC-------------WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR 161
G V+D + ++ S P + AS+ +D LWD T G
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS-PDGSLCASSDKDGVARLWDLTKG--- 228
Query: 162 CTYRAYDAVDEITAAF---SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218
+A+ E+ A + F+P + A K +R+FD+ E +G+K
Sbjct: 229 ------EALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSK 282
Query: 219 E 219
+
Sbjct: 283 K 283
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 32/229 (13%)
Query: 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
+++S DK++ ++ L ++ +Y V L E ++ ++G+ W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW------- 450
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193
D + LWD G+ + R + V SVAF+ +I A +
Sbjct: 451 ------------DGELRLWDLAAGV---STRRF--VGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSYSQTSAIYRE 252
+++++++ KY+ +G EG +S + FSP T + S+ +T ++
Sbjct: 494 RTIKLWNTLGEC----KYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
N +L L G G V+ V S DG+ +GG KD +L WDL + ++
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAEGKKL 596
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 32/293 (10%)
Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181
VY W P + S ++D + +W+A T + + + AF
Sbjct: 69 VYSLDWTPEKNW-------IVSASQDGRLIVWNALT-----SQKTHAIKLHCPWVMECAF 116
Query: 182 NPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
P G + G + + +F++ D + + G G S+ + P L
Sbjct: 117 APNGQSVACGGLDSACSIFNLSSQA-DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 241 GSYSQTSAIYREDNMELLYVL-----HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
GS QT ++ + + + G V + + ++ G D + WDL
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355
R + V + N F P G+ GTG DG ++D++TG + + D
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFF---PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
Query: 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMEN 408
N +A S SG F D + VW L A M+ N
Sbjct: 293 R-NDNELPIVTSVAFSISGRLLFAGYSNGDCY---------VWDTLLAEMVLN 335
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVF 199
S+++D + +WD+ T T + + T + A+ P+G I G + V+
Sbjct: 79 IVSSSQDGKVIVWDSFT-----TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133
Query: 200 DVHRPGRDFEKYSTLKGNKEGQA---GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256
+ F+K + K+ A +SA +F+ + +L S T A++ ++ +
Sbjct: 134 PL-----TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT-ASGDGTCALWDVESGQ 187
Query: 257 LLYVLHGQEGGVTHVQF--SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314
LL HG V + S GN +GG D + WD+R Q V N
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGG-CDKKAMVWDMRSG-QCVQAFETHESDVNS 245
Query: 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348
+ PSG +G D +YDL+ + ++
Sbjct: 246 VRYY---PSGDAFASGSDDATCRLYDLRADREVA 276
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIFAGYN 193
P+ FAS + D L+D LR Y I A SV F+ +G +FAGYN
Sbjct: 250 PSGDAFASGSDDATCRLYD-----LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 194 K-SVRVFDVHRPGR------DFEKYSTLKGNKEGQA 222
++ V+DV + R + STL+ + +G A
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDN-------MELLYVLHGQEGGVTHVQFSRDG 277
+ ++A+ P HT +LA GS+ T +I+ ++ M+LL ++ G E V V +S DG
Sbjct: 61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337
YL T R D + W+ ++ + + EH+ PS L + D V
Sbjct: 120 YYLATCSR-DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 338 IY 339
I+
Sbjct: 179 IW 180
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 34/172 (19%)
Query: 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252
+KSV +++ G ++E S L+ + + + + + P+ +LA SY T I+++
Sbjct: 128 DKSVWIWETDESGEEYECISVLQEHSQD----VKHVIWHPSE-ALLASSSYDDTVRIWKD 182
Query: 253 --DNMELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309
D+ E + VL+G EG V F + +G + G D + W Y
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-----------YMGD 231
Query: 310 EHTNQR------ILFDIEPSGRH---------LGTGGQDGLVHIYDLQTGKW 346
+ +Q+ IL D+ + + + G DG++ +Y+ G+W
Sbjct: 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW 283
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
N +KG+ WS DG T S DK++ I+ E+G Y+ S++ +
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC-------------ISVLQEHSQ 154
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153
V W P+ + AS++ D + +W
Sbjct: 155 DVKHVIWH-------PSEALLASSSYDDTVRIW 180
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 39/179 (21%)
Query: 250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV-------- 301
+R++ ++L + L G + GV V S + D +I WDL Q+
Sbjct: 65 WRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPV 123
Query: 302 -VYKLYRSSE--------HTNQRILFDIE---------------------PSGRHLGTGG 331
+ L S + H + +F +E P G++L +G
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183
Query: 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSG 390
DG+++I+D+ TGK + + A + +F P + ++S + D + +L+G
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 9/167 (5%)
Query: 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL 258
D H D E +K G + +AFSP + LA G++ I+ ++ +
Sbjct: 100 LDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPD-SQYLATGTHVGKVNIFGVESGKKE 157
Query: 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE-HTNQRIL 317
Y L + + + +S DG YL +G D I +D+ KL + E H
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAI-DGIINIFDIATG-----KLLHTLEGHAMPIRS 211
Query: 318 FDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364
P + L T DG + IYD+Q A V +F P
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 39 FDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV 98
FD+ + H ++P ++ + +SPD +T+S+D ++I YDV
Sbjct: 191 FDIATGKLLH---TLEGHAMP---IRSLTFSPDSQLLVTASDDGYIKI---------YDV 235
Query: 99 NACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG 158
+LA S AS V+ FC P F S++ D + +WD G
Sbjct: 236 QHANLAGTL-SGHASWVLNVA-----FC---------PDDTHFVSSSSDKSVKVWD--VG 278
Query: 159 LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFD 200
C + +D D++ + V +N G+KI + G ++ + ++D
Sbjct: 279 TRTCVHTFFDHQDQV---WGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 16/209 (7%)
Query: 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF 189
++ S+PT V+ T + +WD + + D ++ S P G T I
Sbjct: 57 VTISNPTRHVY--TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV 114
Query: 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI 249
G ++ ++D+ P +K A A+A SP + S A+
Sbjct: 115 GGEASTLSIWDLAAP------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI-AV 167
Query: 250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309
+ N L+ G G + + S DG L+TGG D + WDLR+ Q+ +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREGRQL-----QQH 221
Query: 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHI 338
+ T+Q P+G L G + V +
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 111/283 (39%), Gaps = 45/283 (15%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
+N+++ K PDG + + E TL I+ LA +A L +
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIW--------------DLAAPTPRIKAEL-TSSA 141
Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
+ Y A P S V S D I +WD L ++ + A +
Sbjct: 142 PACYAL-------AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-----TDGASCI 189
Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
+ GTK++ G + +VR +D+ R GR +++ + + I S + + PT L
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDL-REGRQLQQH-------DFTSQIFS-LGYCPTGE-WL 239
Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
A+G S + + + Y LH E V ++F+ G + + G KD + W
Sbjct: 240 AVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYG 297
Query: 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341
+ S+ ++ + DI +++ TG D +Y++
Sbjct: 298 ASIF-----QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 15/236 (6%)
Query: 172 EITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
E+ A +++ NPT ++ G V+V+D+ PG K + + + + +
Sbjct: 52 EVVCAVTIS-NPT-RHVYTGGKGCVKVWDISHPG---NKSPVSQLDCLNRDNYIRSCKLL 106
Query: 232 PTHTGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
P L +G + T +I+ + L + S D ++ D
Sbjct: 107 PDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-SDGN 164
Query: 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS- 348
I WDL Q + + ++ HT+ DI G L TGG D V +DL+ G+ +
Sbjct: 165 IAVWDLHN--QTLVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 349 -GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403
F + ++ +L + SS V+ + L E+CV F Y
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 57/265 (21%)
Query: 52 QFRTSSIPNN--FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
TSS P++ +++ + +SPDG T +ED+ +RI+ + I
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------------- 157
Query: 110 YEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
+++ +G + +Y +FP S + D + +WD TG T
Sbjct: 158 ----VMILQGHEQDIYSLDYFPSGDK-------LVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 168 DAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM 225
D V +VA +P G I AG +++VRV+D G E+ + + G +
Sbjct: 207 DGV------TTVAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSV 259
Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------------ELLYVLHGQEGGVTHV 271
++ F+ +++ GS ++ ++ N E+ Y+ G + V V
Sbjct: 260 YSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--GHKDFVLSV 316
Query: 272 QFSRDGNYLYTGGRKDPYILCWDLR 296
+++ Y+ +G KD +L WD +
Sbjct: 317 ATTQNDEYILSGS-KDRGVLFWDKK 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 268 VTHVQFSRDGNYLYTGGRKDPYILCWDL--RKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325
+ V FS DG +L TG +D I WD+ RK V ++ H D PSG
Sbjct: 126 IRSVCFSPDGKFLATGA-EDRLIRIWDIENRKIVMIL------QGHEQDIYSLDYFPSGD 178
Query: 326 HLGTGGQDGLVHIYDLQTGK 345
L +G D V I+DL+TG+
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQ 198
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 13/149 (8%)
Query: 248 AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL----------CWDLRK 297
A+ RE ++EL L V V+FS DG YL TG K + D
Sbjct: 48 ALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSA 106
Query: 298 AVQVVYKLYRSSEHTNQRILFDI--EPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355
A + L SS ++ + + P G+ L TG +D L+ I+D++ K + Q
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 166
Query: 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384
+ + P S SG R + D
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 22/191 (11%)
Query: 167 YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH------------RPGRDFEKYSTL 214
+ ++D + V F+ G + G NK+ +V+ V +D E +T
Sbjct: 58 HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT- 116
Query: 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274
+ + ++ FSP LA G+ + I+ +N +++ +L G E + + +
Sbjct: 117 -SSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 174
Query: 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQD 333
G+ L +G D + WDLR Q L T + P G+++ G D
Sbjct: 175 PSGDKLVSGS-GDRTVRIWDLRTG-QCSLTLSIEDGVTT----VAVSPGDGKYIAAGSLD 228
Query: 334 GLVHIYDLQTG 344
V ++D +TG
Sbjct: 229 RAVRVWDSETG 239
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 34/226 (15%)
Query: 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
L++S DKT+ ++ L + +Y + +L ++ ++G+ W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW------- 83
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193
D + LWD TTG T R + V SVAF+ +I +G +
Sbjct: 84 ------------DGTLRLWDLTTG---TTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRE 252
K++++++ KY+ E + +S + FSP + + + + + ++
Sbjct: 127 KTIKLWNT----LGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
N +L G G + V S DG+ +GG KD + WDL +
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEG 224
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT 312
+ M L L G G VT + + + +D I+ W L + + Y + + +
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQRALRG 61
Query: 313 NQRILFD--IEPSGRHLGTGGQDGLVHIYDLQTG 344
+ + D I G+ +G DG + ++DL TG
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 95
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 34/226 (15%)
Query: 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
L++S DKT+ ++ L + +Y + +L ++ ++G+ W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW------- 106
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193
D + LWD TTG T R + V SVAF+ +I +G +
Sbjct: 107 ------------DGTLRLWDLTTG---TTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRE 252
K++++++ KY+ E + +S + FSP + + + + + ++
Sbjct: 150 KTIKLWNT----LGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
N +L G G + V S DG+ +GG KD + WDL +
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEG 247
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT 312
+ M L L G G VT + + + +D I+ W L + + Y + + +
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQRALRG 84
Query: 313 NQRILFD--IEPSGRHLGTGGQDGLVHIYDLQTG 344
+ + D I G+ +G DG + ++DL TG
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 3/156 (1%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNMELLYVLHGQEGGVTHVQFSRDG 277
E + +IA PT +L+ GS T ++ E+N L G E V V F+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337
+ G D + W L ++ + L E + + P ++ T D +
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 338 IYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
I+D QT ++ + V+ FHP LP+ S S
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 330 GGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
G D + +++ TG+ + F+A D + + HP P S S
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 3/156 (1%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNMELLYVLHGQEGGVTHVQFSRDG 277
E + +IA PT +L+ GS T ++ E+N L G E V V F+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337
+ G D + W L ++ + L E + + P ++ T D +
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 338 IYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
I+D QT ++ + V+ FHP LP+ S S
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 330 GGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
G D + +++ TG+ + F+A D + + HP P S S
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/384 (19%), Positives = 137/384 (35%), Gaps = 84/384 (21%)
Query: 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121
+K WS DG + ++++K L +F + +G+ +++ T S
Sbjct: 800 IVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIH-----------------TGHHS 841
Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181
+C F P + + + LW+ + L + D ++ V F
Sbjct: 842 TIQYCDFS------PYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSWVHGVMF 890
Query: 182 NPTGTKIF-AGYNKSVRVFDVHRPGRD------------FEKYST------------LKG 216
+P G+ A ++++RV++ + ++ F++ T L
Sbjct: 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 217 NKEGQAGIM-----SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
K GQ + S SP H +A G I N + G + V H+
Sbjct: 951 GKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009
Query: 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331
QF+ DG L + +D I W+ + V + ++ + + R+L D L +
Sbjct: 1010 QFTADGKTLISSS-EDSVIQVWNWQTGDYVFLQAHQETV-KDFRLLQD-----SRLLSWS 1062
Query: 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGD 391
DG V ++++ TG+ F TV L A SS D +
Sbjct: 1063 FDGTVKVWNVITGRIERDFTCHQGTV--------LSCAISS---------DATKFSSTSA 1105
Query: 392 ENCVSVWSFLYASMMENADGINGC 415
+ +WSF S + G NGC
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNGC 1129
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 25/27 (92%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+++ G+ +SPDGSSFLT+S+D+T+R++
Sbjct: 883 SWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 7/132 (5%)
Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
+T +++ + E L + E V FS D +Y+ T D + WD V
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADKKVKIWDSATGKLV--- 692
Query: 305 LYRSSEHTNQRILFDIEPSGRHL--GTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
+ EH+ Q HL TG D + ++DL + + ++VN F
Sbjct: 693 -HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 751
Query: 363 HPFLPMAASSSG 374
P + AS S
Sbjct: 752 SPDDELLASCSA 763
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/384 (19%), Positives = 137/384 (35%), Gaps = 84/384 (21%)
Query: 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121
+K WS DG + ++++K L +F + +G+ +++ T S
Sbjct: 807 IVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIH-----------------TGHHS 848
Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181
+C F P + + + LW+ + L + D ++ V F
Sbjct: 849 TIQYCDFS------PYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSWVHGVMF 897
Query: 182 NPTGTKIF-AGYNKSVRVFDVHRPGRD------------FEKYST------------LKG 216
+P G+ A ++++RV++ + ++ F++ T L
Sbjct: 898 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 217 NKEGQAGIM-----SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
K GQ + S SP H +A G I N + G + V H+
Sbjct: 958 GKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1016
Query: 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331
QF+ DG L + +D I W+ + V + ++ + + R+L D L +
Sbjct: 1017 QFTADGKTLISSS-EDSVIQVWNWQTGDYVFLQAHQETV-KDFRLLQD-----SRLLSWS 1069
Query: 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGD 391
DG V ++++ TG+ F TV L A SS D +
Sbjct: 1070 FDGTVKVWNVITGRIERDFTCHQGTV--------LSCAISS---------DATKFSSTSA 1112
Query: 392 ENCVSVWSFLYASMMENADGINGC 415
+ +WSF S + G NGC
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNGC 1136
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 25/27 (92%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+++ G+ +SPDGSSFLT+S+D+T+R++
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 7/132 (5%)
Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
+T +++ + E L + E V FS D +Y+ T D + WD V
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADKKVKIWDSATGKLV--- 699
Query: 305 LYRSSEHTNQRILFDIEPSGRHL--GTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
+ EH+ Q HL TG D + ++DL + + ++VN F
Sbjct: 700 -HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 758
Query: 363 HPFLPMAASSSG 374
P + AS S
Sbjct: 759 SPDDELLASCSA 770
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 3/156 (1%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNMELLYVLHGQEGGVTHVQFSRDG 277
E + +IA PT +L+ GS T ++ E+N L G E V V F+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337
+ G D + W L ++ + L E + + P ++ T D +
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 338 IYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
I+D QT ++ + V+ FHP LP+ S S
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 329 TGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
G D + +++ TG+ + F+A D + + HP P S S
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 3/156 (1%)
Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNMELLYVLHGQEGGVTHVQFSRDG 277
E + +IA PT +L+ GS T ++ E+N L G E V V F+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337
+ G D + W L ++ + L E + + P ++ T D +
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 338 IYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373
I+D QT ++ + V+ FHP LP+ S S
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 25/27 (92%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+++ G+ +SPDGSSFLTSS+D+T+R++
Sbjct: 889 SWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 19/174 (10%)
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-------DAVDEITAAFS-VAFNPTGTK 187
P + AS + D + LWDAT+ R + D +++ +++ G +
Sbjct: 759 PDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGAR 818
Query: 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSYSQT 246
I + +FD+H G E ++ G + FSP H ++A+ Y
Sbjct: 819 IMVAAKNKIFLFDIHTSGLLGEIHT-------GHHSTIQYCDFSPQNHLAVVALSQY--C 869
Query: 247 SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
++ D+ + G V V FS DG+ T D I W+ +K +
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS-DDQTIRLWETKKVCK 922
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 7/132 (5%)
Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
+T +++ + E L + E V FS D ++ T D + W+ V
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSV-DKKVKIWNSMTGELV--- 698
Query: 305 LYRSSEHTNQRILFDIEPSGRHL--GTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362
+ EH+ Q S HL TG D + ++DL + + ++VN F
Sbjct: 699 -HTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRF 757
Query: 363 HPFLPMAASSSG 374
P + AS S
Sbjct: 758 SPDDKLLASCSA 769
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDGLVHIYD 340
TG DP IL WDLR A + L + H + D H L + G+D V +++
Sbjct: 234 TGSDNDPSILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Query: 341 LQTGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDE 392
++ + +S F A + F P P + A +S + V ++L + DE
Sbjct: 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDE 344
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
LA+G+ S ++ + L + V + ++ +Y+ + G + +I D+R
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV 229
Query: 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--WI 347
A V L S H+ + P GRHL +GG D LV+++ G+ W+
Sbjct: 230 AEHHVATL---SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
LA+G+ S ++ + L + V + ++ +Y+ + G + +I D+R
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV 218
Query: 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--WI 347
A V L S H+ + P GRHL +GG D LV+++ G+ W+
Sbjct: 219 AEHHVATL---SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
LA+G+ S ++ + L + V + ++ +Y+ + G + +I D+R
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV 138
Query: 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345
A V L S H+ + P GRHL +GG D LV+++ G+
Sbjct: 139 AEHHVATL---SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF 199
S +RD + +WD TG +C + + + A V ++ G ++ +G Y+ V+V+
Sbjct: 212 VVSGSRDATLRVWDIETG--QCLHVL---MGHVAAVRCVQYD--GRRVVSGAYDFMVKVW 264
Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
D + T +G + ++ F H + GS + ++ + ++
Sbjct: 265 D--------PETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIH 313
Query: 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFD 319
L G + + ++ + + G D + WD++ Q + L ++H Q +
Sbjct: 314 TLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKH--QSAVTC 367
Query: 320 IEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350
++ + + T DG V ++DL+TG++I
Sbjct: 368 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 92/239 (38%), Gaps = 31/239 (12%)
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198
+ S + D + +W+A TG C + Y + + ++ +G + ++RV
Sbjct: 171 IIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRC-----MHLHEKRVVSGSRDATLRV 223
Query: 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL 258
+D+ + L G+ ++A+ + G+Y ++ + L
Sbjct: 224 WDIETG----QCLHVLMGH-------VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL 272
Query: 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILF 318
+ L G V +QF DG ++ +G D I WD+ ++ L +Q +
Sbjct: 273 HTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVETG-NCIHTLT-----GHQSLTS 323
Query: 319 DIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA---ADTVNGFSFHPFLPMAASSSG 374
+E L +G D V I+D++TG+ + Q V F+ + +S G
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 382
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 249 IYREDNMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307
++R D+ E + + + H V F R L I WD R+ ++
Sbjct: 174 LFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKI--WDFRQQGNEPSQILS 231
Query: 308 SSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQTGKW-ISGFQAAADTVNGFSFHPF 365
+ D P+ +H+ TGGQDG++ I+D++ G +S +A + FHP
Sbjct: 232 LTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPS 291
Query: 366 LP 367
P
Sbjct: 292 NP 293
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 31/212 (14%)
Query: 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282
G M+++ H ++ GSY T ++ M+ LY+L G + + + +
Sbjct: 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342
D I WDL +++Y L HT L + S + L + DG + +D
Sbjct: 328 ASM-DTTIRIWDLENG-ELMYTL---QGHTALVGLLRL--SDKFLVSAAADGSIRGWD-- 378
Query: 343 TGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWS--- 399
A D FS+H + S F V D ++ +SG EN ++++
Sbjct: 379 ----------ANDYSRKFSYH-----HTNLSAITTFYVSD--NILVSGSENQFNIYNLRS 421
Query: 400 --FLYASMMENADGINGCEFNCQSEHENLNQD 429
++A+++++AD I F ++ + +D
Sbjct: 422 GKLVHANILKDADQIWSVNFKGKTLVAAVEKD 453
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107
G+ WSPDG+ ++S DKT++I+++ + + + +DQ
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
Query: 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272
T GN GQA M+++ F P+ + GS T AI+ + V V+
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197
Query: 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK--LYRSSEHTNQRILFDIEPSGRHLGTG 330
++ DG+ + G +L + V++ ++ H+ P G + +
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 331 GQDGLVHIYDLQTGK 345
D + I+++ T K
Sbjct: 258 SADKTIKIWNVATLK 272
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 18/178 (10%)
Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR--AYDAVDEITAAFSVAFNPTG 185
F H +P +FAST D I L++ G + + V + F + ++P G
Sbjct: 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM---SAIAFSPTHTGMLAIG 241
TKI A +K++++++V +TLK K G + T +++I
Sbjct: 252 TKIASASADKTIKIWNV----------ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301
Query: 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299
+ + + E + V +G +T + S DG L++ + +I WD+ +
Sbjct: 302 ANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFS-ADAEGHINSWDISTGI 357
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 94/258 (36%), Gaps = 35/258 (13%)
Query: 66 IKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
I W P + + S SED T+ ++ +P+ G+ + + + + +V
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV--------- 137
Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
W P V S D+ I +WD TG T D I +SV ++
Sbjct: 138 -AWHPT------AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI---YSVDWSRD 187
Query: 185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
G I +K VRV + + EK +G + A +S G + +
Sbjct: 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE--------GKILTTGF 239
Query: 244 SQTS--AIYREDNMELLYVLHGQE----GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
S+ S + D L L QE GV F D N +Y G+ D I +++
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 298 AVQVVYKLYRSSEHTNQR 315
++ L S +QR
Sbjct: 300 EAPFLHYLSMFSSKESQR 317
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS-PTHTGMLAIGSYSQTSAIYR 251
++SV++FDV G+ L + G G + +A++ P + +LA SY + I+R
Sbjct: 34 DRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 252 EDN--MELLYVLHGQEGGVTHVQFS-RDGNYLYTGGRKDPYILC--------WDLRK--- 297
E+N E + G + V V ++ D + G D I W+++K
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147
Query: 298 AVQVVYKLYRSSEHTNQRILFDIEPSG------RHLGTGGQDGLVHIY-DLQTGKWI--S 348
A + + L D PSG + +GG D L+ ++ + + G+W
Sbjct: 148 AHTIGCNAVSWAPAVVPGSLID-HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ 206
Query: 349 GFQAAADTVNGFSFHPFLPMAASS 372
+A +D V ++ P + + S+
Sbjct: 207 KLEAHSDWVRDVAWAPSIGLPTST 230
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 109/270 (40%), Gaps = 38/270 (14%)
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIFAG--Y 192
P V S + D I +WD TG T + + D+V +I +F+ +G K+ A
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI------SFDHSG-KLLASCSA 170
Query: 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252
+ +++++D + FE T+ G+ +S+++ P +++ S +T ++
Sbjct: 171 DMTIKLWDF----QGFECIRTMHGHDHN----VSSVSIMPNGDHIVS-ASRDKTIKMWEV 221
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW---------DLRKAVQVVY 303
+ G V V+ ++DG L D + W +LR+ VV
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 304 KL-------YRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355
+ Y S SE T +P G L +G +D + ++D+ TG + +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339
Query: 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFED 385
V G FH S + + V D+++
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279
G ++ + F P + M++ S T ++ + + L G V + F G
Sbjct: 106 GHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 164
Query: 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339
L + D I WD + + + ++ H + I P+G H+ + +D + ++
Sbjct: 165 LASCS-ADMTIKLWDF-QGFECIRTMH---GHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 340 DLQTGKWISGF 350
++QTG + F
Sbjct: 220 EVQTGYCVKTF 230
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 94/258 (36%), Gaps = 35/258 (13%)
Query: 66 IKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
I W P + + S SED T+ ++ +P+ G+ + + + + +V
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA-------- 138
Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
W P V S D+ I +WD TG T D I +SV ++
Sbjct: 139 --WHPTAQN------VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI---YSVDWSRD 187
Query: 185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
G I +K VRV + + EK +G + A +S G + +
Sbjct: 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE--------GKILTTGF 239
Query: 244 SQTS--AIYREDNMELLYVLHGQE----GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
S+ S + D L L QE GV F D N +Y G+ D I +++
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 298 AVQVVYKLYRSSEHTNQR 315
++ L S +QR
Sbjct: 300 EAPFLHYLSMFSSKESQR 317
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 141 FASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN 193
S + DH + LWD G + + + AV E VA++ +F
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE-----DVAWHLLHESLFGSVA 249
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253
++ K S L + ++ ++F+P +LA GS +T A++
Sbjct: 250 DDQKLMIWDTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 254 NMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
N++L L+ + + V +S + D + WDL K
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 318 FDIEP-SGRHLGTGGQDGLVHIYDLQ 342
DIEP GR++ +GG DG++ +YDL+
Sbjct: 49 LDIEPVEGRYMLSGGSDGVIVLYDLE 74
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 177 FSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
S++ P T++F + S +++DV R G + ++ G ++AI F P
Sbjct: 188 MSLSLAPD-TRLFVSGACDASAKLWDV-REGMCRQTFT-------GHESDINAICFFPNG 238
Query: 235 TGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
A GS T ++ R D + Y G+T V FS+ G L G D
Sbjct: 239 NA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNV 296
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
WD KA + + H N+ + G + TG D + I++
Sbjct: 297 WDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 31/211 (14%)
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------- 191
+ S ++D + +WD+ T T + + + + A+ P+G + G
Sbjct: 69 LLVSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251
YN R +V R R+ G G +S F + + S T A++
Sbjct: 124 YNLKTREGNV-RVSRELA----------GHTGYLSCCRFLDDN--QIVTSSGDTTCALWD 170
Query: 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311
+ + G G V + + D L+ G D WD+R+ + + + E
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--CRQTFTGHES 227
Query: 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342
I F P+G TG D ++DL+
Sbjct: 228 DINAICF--FPNGNAFATGSDDATCRLFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 177 FSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
S++ P T++F + S +++DV R G + ++ G ++AI F P
Sbjct: 188 MSLSLAPD-TRLFVSGACDASAKLWDV-REGMCRQTFT-------GHESDINAICFFPNG 238
Query: 235 TGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
A GS T ++ R D + Y G+T V FS+ G L G D
Sbjct: 239 NA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNV 296
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
WD KA + + H N+ + G + TG D + I++
Sbjct: 297 WDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 31/211 (14%)
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------- 191
+ S ++D + +WD+ T T + + + + A+ P+G + G
Sbjct: 69 LLLSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251
YN R +V R R+ G G +S F + + S T A++
Sbjct: 124 YNLKTREGNV-RVSRELA----------GHTGYLSCCRFLDDN--QIVTSSGDTTCALWD 170
Query: 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311
+ + G G V + + D L+ G D WD+R+ + + + E
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--CRQTFTGHES 227
Query: 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342
I F P+G TG D ++DL+
Sbjct: 228 DINAICF--FPNGNAFATGSDDATCRLFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 177 FSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
S++ P T++F + S +++DV R G + ++ G ++AI F P
Sbjct: 188 MSLSLAPD-TRLFVSGACDASAKLWDV-REGMCRQTFT-------GHESDINAICFFPNG 238
Query: 235 TGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
A GS T ++ R D + Y G+T V FS+ G L G D
Sbjct: 239 NA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNV 296
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
WD KA + + H N+ + G + TG D + I++
Sbjct: 297 WDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 31/211 (14%)
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------- 191
+ S ++D + +WD+ T T + + + + A+ P+G + G
Sbjct: 69 LLLSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251
YN R +V R R+ G G +S F + + S T A++
Sbjct: 124 YNLKTREGNV-RVSRELA----------GHTGYLSCCRFLDDN--QIVTSSGDTTCALWD 170
Query: 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311
+ + G G V + + D L+ G D WD+R+ + + + E
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--CRQTFTGHES 227
Query: 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342
I F P+G TG D ++DL+
Sbjct: 228 DINAICF--FPNGNAFATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 177 FSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
S++ P T++F + S +++DV R G + ++ G ++AI F P
Sbjct: 188 MSLSLAPD-TRLFVSGACDASAKLWDV-REGMCRQTFT-------GHESDINAICFFPNG 238
Query: 235 TGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
A GS T ++ R D + Y G+T V FS+ G L G D
Sbjct: 239 NA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNV 296
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
WD KA + + H N+ + G + TG D + I++
Sbjct: 297 WDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 31/211 (14%)
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------- 191
+ S ++D + +WD+ T T + + + + A+ P+G + G
Sbjct: 69 LLVSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251
YN R +V R R+ G G +S F + + S T A++
Sbjct: 124 YNLKTREGNV-RVSRELA----------GHTGYLSCCRFLDDN--QIVTSSGDTTCALWD 170
Query: 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311
+ + G G V + + D L+ G D WD+R+ + + + E
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--CRQTFTGHES 227
Query: 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342
I F P+G TG D ++DL+
Sbjct: 228 DINAICF--FPNGNAFATGSDDATCRLFDLR 256
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 141 FASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN 193
S + DH + LWD G + + + AV E VA++ +F
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE-----DVAWHLLHESLFGSVA 249
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253
++ K S L + ++ ++F+P +LA GS +T A++
Sbjct: 250 DDQKLXIWDTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 254 NMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
N++L L+ + + V +S + D + WDL K
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 177 FSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
S++ P T++F + S +++DV R G + ++ G ++AI F P
Sbjct: 199 MSLSLAPD-TRLFVSGACDASAKLWDV-REGMCRQTFT-------GHESDINAICFFPNG 249
Query: 235 TGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
A GS T ++ R D + Y G+T V FS+ G L G D
Sbjct: 250 NA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNV 307
Query: 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340
WD KA + + H N+ + G + TG D + I++
Sbjct: 308 WDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 31/211 (14%)
Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------- 191
+ S ++D + +WD+ T T + + + + A+ P+G + G
Sbjct: 80 LLVSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 134
Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251
YN R +V R R+ G G +S F + + S T A++
Sbjct: 135 YNLKTREGNV-RVSRELA----------GHTGYLSCCRFLDDN--QIVTSSGDTTCALWD 181
Query: 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311
+ + G G V + + D L+ G D WD+R+ + + + E
Sbjct: 182 IETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--CRQTFTGHES 238
Query: 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342
I F P+G TG D ++DL+
Sbjct: 239 DINAICF--FPNGNAFATGSDDATCRLFDLR 267
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 320 IEPSGRH--LGTGGQDGLVHIYDLQTGKWISGF 350
IE S RH L T G DG++ ++LQT K I F
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 320 IEPSGRH--LGTGGQDGLVHIYDLQTGKWISGF 350
IE S RH L T G DG++ ++LQT K I F
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 320 IEPSGRH--LGTGGQDGLVHIYDLQTGKWISGF 350
IE S RH L T G DG++ ++LQT K I F
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 320 IEPSGRH--LGTGGQDGLVHIYDLQTGKWISGF 350
IE S RH L T G DG++ ++LQT K I F
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI 249
+ + + GR ++S L K G AG++ I+F T ML I + A+
Sbjct: 308 IELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV 361
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 188 IFAGYN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227
+FA Y K + +VHRPG + E L G+KEG + A
Sbjct: 450 LFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKA 493
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 31/193 (16%)
Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
H ++ GSY T ++ + LY+L G + + + + D I W
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS-XDTTIRIW 337
Query: 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353
DL ++ Y L HT L + S + L + DG + +D A
Sbjct: 338 DLENG-ELXYTL---QGHTALVGLLRL--SDKFLVSAAADGSIRGWD------------A 379
Query: 354 ADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWS-----FLYASMMEN 408
D FS+H A ++ F V D ++ +SG EN ++++ ++A+++++
Sbjct: 380 NDYSRKFSYHHTNLSAITT-----FYVSD--NILVSGSENQFNIYNLRSGKLVHANILKD 432
Query: 409 ADGINGCEFNCQS 421
AD I F ++
Sbjct: 433 ADQIWSVNFKGKT 445
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
I W PD +S ++D+TLR EN + V ++D YE E F
Sbjct: 226 IVWGPDHTSLFYVTKDETLR-----ENKVWRHVMGKLQSEDVCLYE--------EHNPLF 272
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTG 158
F + +A T C+ + + +HL D G
Sbjct: 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,394,864
Number of Sequences: 62578
Number of extensions: 579100
Number of successful extensions: 1687
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1398
Number of HSP's gapped (non-prelim): 208
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)