Query 014125
Match_columns 430
No_of_seqs 718 out of 2594
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 02:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.2E-54 1.4E-58 347.0 26.6 290 49-381 104-436 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.8E-50 4E-55 326.9 26.4 295 52-382 149-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-50 2.5E-55 332.0 21.7 339 3-382 115-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.5E-48 5.5E-53 303.8 31.6 291 51-381 46-342 (343)
5 KOG0279 G protein beta subunit 100.0 1.5E-42 3.2E-47 269.8 30.8 291 53-381 8-310 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-44 3.4E-49 296.1 20.6 242 115-382 171-416 (459)
7 KOG0265 U5 snRNP-specific prot 100.0 5.5E-41 1.2E-45 263.7 28.6 292 50-380 37-334 (338)
8 KOG0318 WD40 repeat stress pro 100.0 2.6E-40 5.6E-45 278.7 34.4 317 49-401 179-602 (603)
9 KOG0291 WD40-repeat-containing 100.0 1.7E-40 3.6E-45 291.2 34.0 341 39-414 122-563 (893)
10 KOG0315 G-protein beta subunit 100.0 1.5E-40 3.2E-45 254.5 28.1 284 73-414 11-301 (311)
11 KOG0282 mRNA splicing factor [ 100.0 2.5E-42 5.5E-47 288.0 19.7 303 40-382 194-503 (503)
12 KOG0273 Beta-transducin family 100.0 1.2E-40 2.6E-45 277.0 29.4 277 61-382 236-521 (524)
13 KOG0645 WD40 repeat protein [G 100.0 9.1E-40 2E-44 253.3 31.0 288 52-381 6-308 (312)
14 KOG0285 Pleiotropic regulator 100.0 8.6E-41 1.9E-45 268.7 24.3 300 41-385 132-440 (460)
15 KOG0284 Polyadenylation factor 100.0 9E-42 1.9E-46 278.8 18.9 281 60-383 96-379 (464)
16 KOG0319 WD40-repeat-containing 100.0 6.5E-41 1.4E-45 293.2 24.8 340 51-419 95-595 (775)
17 KOG2919 Guanine nucleotide-bin 100.0 4.7E-40 1E-44 261.1 26.9 370 28-403 19-395 (406)
18 KOG0295 WD40 repeat-containing 100.0 2.2E-40 4.9E-45 266.8 24.1 289 51-382 99-404 (406)
19 KOG0286 G-protein beta subunit 100.0 3.1E-39 6.6E-44 253.0 28.7 249 114-383 50-302 (343)
20 KOG0273 Beta-transducin family 100.0 1.2E-39 2.5E-44 271.2 27.3 317 54-406 173-509 (524)
21 KOG0263 Transcription initiati 100.0 1.9E-39 4E-44 286.7 27.6 295 52-372 370-703 (707)
22 KOG0315 G-protein beta subunit 100.0 2.7E-38 5.8E-43 242.2 28.8 272 51-363 31-309 (311)
23 cd00200 WD40 WD40 domain, foun 100.0 7.5E-38 1.6E-42 271.7 34.7 286 54-382 3-289 (289)
24 KOG0293 WD40 repeat-containing 100.0 3.7E-39 8E-44 263.9 22.7 300 44-381 208-510 (519)
25 KOG0279 G protein beta subunit 100.0 4.5E-38 9.8E-43 244.9 26.8 252 51-342 54-313 (315)
26 KOG0296 Angio-associated migra 100.0 2.4E-37 5.2E-42 249.5 28.5 287 51-382 55-396 (399)
27 KOG0266 WD40 repeat-containing 100.0 3.5E-37 7.6E-42 279.4 32.7 289 52-381 150-451 (456)
28 KOG0316 Conserved WD40 repeat- 100.0 3.7E-37 8E-42 234.1 25.5 279 51-374 8-290 (307)
29 PLN00181 protein SPA1-RELATED; 100.0 2.6E-36 5.7E-41 294.1 37.8 295 56-382 479-791 (793)
30 KOG0291 WD40-repeat-containing 100.0 6.3E-36 1.4E-40 262.6 34.5 335 60-422 96-486 (893)
31 KOG0276 Vesicle coat complex C 100.0 8.2E-37 1.8E-41 262.8 27.1 309 55-404 8-320 (794)
32 KOG0263 Transcription initiati 100.0 3.9E-37 8.4E-42 272.1 23.0 247 119-386 378-651 (707)
33 KOG0306 WD40-repeat-containing 100.0 3.7E-36 8E-41 264.0 28.3 335 53-421 100-641 (888)
34 KOG0284 Polyadenylation factor 100.0 8.5E-38 1.8E-42 255.6 16.5 256 120-401 97-380 (464)
35 KOG0281 Beta-TrCP (transducin 100.0 1.4E-37 2.9E-42 249.6 16.1 279 58-406 195-482 (499)
36 KOG1407 WD40 repeat protein [F 100.0 1.7E-35 3.8E-40 228.4 27.0 297 54-401 14-311 (313)
37 KOG0313 Microtubule binding pr 100.0 6.9E-36 1.5E-40 242.3 25.7 296 57-383 102-417 (423)
38 KOG0318 WD40 repeat stress pro 100.0 1.3E-34 2.7E-39 244.5 33.5 312 53-404 52-395 (603)
39 KOG0285 Pleiotropic regulator 100.0 9.5E-36 2.1E-40 239.8 24.0 261 113-401 145-439 (460)
40 KOG0319 WD40-repeat-containing 100.0 1.5E-35 3.3E-40 259.7 26.8 299 52-382 315-617 (775)
41 KOG0275 Conserved WD40 repeat- 100.0 2.5E-36 5.5E-41 240.4 19.0 294 56-382 209-507 (508)
42 KOG0278 Serine/threonine kinas 100.0 2.9E-36 6.3E-41 231.3 17.6 281 55-381 9-294 (334)
43 KOG0295 WD40 repeat-containing 100.0 8.8E-36 1.9E-40 240.4 20.8 258 115-414 104-377 (406)
44 KOG0640 mRNA cleavage stimulat 100.0 2.9E-35 6.3E-40 232.8 22.1 313 53-382 105-424 (430)
45 KOG0643 Translation initiation 100.0 2.5E-34 5.4E-39 222.8 26.1 288 55-380 5-313 (327)
46 KOG0645 WD40 repeat protein [G 100.0 1.3E-33 2.9E-38 219.2 29.6 265 115-401 10-311 (312)
47 KOG0772 Uncharacterized conser 100.0 1.6E-34 3.4E-39 243.4 24.0 305 53-381 160-484 (641)
48 KOG0292 Vesicle coat complex C 100.0 2.5E-34 5.4E-39 256.9 26.2 304 57-402 6-349 (1202)
49 KOG0277 Peroxisomal targeting 100.0 2.7E-34 5.9E-39 220.9 21.7 281 64-382 12-307 (311)
50 KOG0266 WD40 repeat-containing 100.0 2.6E-33 5.7E-38 254.2 30.8 256 118-412 158-420 (456)
51 KOG0306 WD40-repeat-containing 100.0 8.3E-34 1.8E-38 249.3 26.0 291 54-382 367-662 (888)
52 KOG0288 WD40 repeat protein Ti 100.0 1.4E-34 3.1E-39 237.1 18.5 289 52-381 167-458 (459)
53 KOG0282 mRNA splicing factor [ 100.0 9.8E-35 2.1E-39 242.8 15.9 263 113-399 208-503 (503)
54 KOG1446 Histone H3 (Lys4) meth 100.0 7.4E-32 1.6E-36 214.5 31.0 279 53-373 7-294 (311)
55 KOG0310 Conserved WD40 repeat- 100.0 3.9E-33 8.5E-38 233.6 24.3 277 60-381 26-306 (487)
56 PLN00181 protein SPA1-RELATED; 100.0 2.3E-32 4.9E-37 266.6 33.4 240 117-383 481-737 (793)
57 KOG0265 U5 snRNP-specific prot 100.0 8.2E-33 1.8E-37 217.9 23.9 269 112-424 40-318 (338)
58 cd00200 WD40 WD40 domain, foun 100.0 8E-32 1.7E-36 233.8 31.9 241 117-383 7-248 (289)
59 KOG0316 Conserved WD40 repeat- 100.0 2.1E-32 4.7E-37 208.3 23.8 264 115-425 13-281 (307)
60 KOG0299 U3 snoRNP-associated p 100.0 5.3E-32 1.1E-36 225.2 26.5 295 53-373 135-444 (479)
61 KOG0268 Sof1-like rRNA process 100.0 1.9E-33 4.2E-38 226.9 17.1 281 54-381 60-342 (433)
62 KOG0276 Vesicle coat complex C 100.0 3.4E-32 7.4E-37 234.5 25.1 258 118-401 12-276 (794)
63 KOG0277 Peroxisomal targeting 100.0 3.2E-32 6.9E-37 209.6 22.2 260 121-399 10-307 (311)
64 KOG0292 Vesicle coat complex C 100.0 2.7E-32 5.9E-37 243.9 24.5 265 119-405 9-325 (1202)
65 KOG0296 Angio-associated migra 100.0 1.1E-31 2.4E-36 217.0 24.4 280 114-419 59-373 (399)
66 KOG0283 WD40 repeat-containing 100.0 1.2E-31 2.5E-36 239.6 26.6 302 55-383 261-575 (712)
67 KOG0281 Beta-TrCP (transducin 100.0 4.3E-33 9.4E-38 223.8 14.1 258 119-414 197-469 (499)
68 PTZ00421 coronin; Provisional 100.0 4E-30 8.6E-35 232.3 32.8 281 60-366 20-315 (493)
69 KOG0641 WD40 repeat protein [G 100.0 1.4E-29 2.9E-34 192.1 29.8 306 51-382 24-347 (350)
70 KOG0293 WD40 repeat-containing 100.0 4.3E-31 9.3E-36 216.9 22.0 263 114-403 219-515 (519)
71 KOG0274 Cdc4 and related F-box 100.0 2.5E-30 5.4E-35 233.7 27.5 286 55-409 202-490 (537)
72 KOG0289 mRNA splicing factor [ 100.0 3.2E-30 6.9E-35 213.1 25.4 281 61-381 220-503 (506)
73 KOG0973 Histone transcription 100.0 3.2E-30 6.8E-35 236.4 28.0 292 60-381 13-352 (942)
74 KOG0305 Anaphase promoting com 100.0 6.6E-30 1.4E-34 222.4 28.1 271 65-381 182-458 (484)
75 KOG2096 WD40 repeat protein [G 100.0 6.8E-30 1.5E-34 203.2 25.4 291 51-373 77-392 (420)
76 KOG0647 mRNA export protein (c 100.0 1.5E-29 3.2E-34 199.7 26.5 282 51-373 18-312 (347)
77 KOG0264 Nucleosome remodeling 100.0 1.8E-30 4E-35 216.0 21.5 260 110-384 115-404 (422)
78 KOG0313 Microtubule binding pr 100.0 7.3E-30 1.6E-34 207.5 23.5 242 116-384 102-376 (423)
79 KOG0772 Uncharacterized conser 100.0 3.8E-30 8.3E-35 217.1 21.6 293 114-428 162-471 (641)
80 KOG1036 Mitotic spindle checkp 100.0 5.7E-29 1.2E-33 197.2 26.1 273 57-374 10-294 (323)
81 KOG1408 WD40 repeat protein [F 100.0 2.6E-29 5.7E-34 220.2 26.5 296 63-383 327-712 (1080)
82 KOG0301 Phospholipase A2-activ 100.0 4.6E-29 9.9E-34 217.8 26.5 282 50-382 4-286 (745)
83 KOG0308 Conserved WD40 repeat- 100.0 1.6E-29 3.5E-34 219.1 23.1 324 58-410 19-402 (735)
84 KOG0264 Nucleosome remodeling 100.0 2.8E-29 6E-34 209.0 22.7 265 54-342 118-404 (422)
85 KOG0305 Anaphase promoting com 100.0 7E-29 1.5E-33 216.1 26.0 243 59-344 216-463 (484)
86 KOG1446 Histone H3 (Lys4) meth 100.0 4.5E-28 9.7E-33 193.0 28.2 241 118-382 13-260 (311)
87 KOG0650 WD40 repeat nucleolar 100.0 1.5E-29 3.2E-34 217.3 21.0 306 38-381 376-732 (733)
88 KOG0300 WD40 repeat-containing 100.0 3.6E-29 7.8E-34 199.1 21.6 294 49-381 137-473 (481)
89 KOG1063 RNA polymerase II elon 100.0 2E-28 4.4E-33 213.8 27.8 346 49-408 180-657 (764)
90 PTZ00421 coronin; Provisional 100.0 8E-28 1.7E-32 217.4 32.6 243 135-383 29-289 (493)
91 KOG0641 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 181.4 28.0 262 111-384 24-303 (350)
92 PTZ00420 coronin; Provisional 100.0 1E-27 2.2E-32 217.6 32.1 230 143-383 49-292 (568)
93 PTZ00420 coronin; Provisional 100.0 9.7E-28 2.1E-32 217.7 32.0 249 78-367 50-319 (568)
94 KOG1274 WD40 repeat protein [G 100.0 5.2E-28 1.1E-32 217.8 29.6 279 57-381 10-297 (933)
95 KOG1063 RNA polymerase II elon 100.0 6.7E-28 1.5E-32 210.5 27.5 305 54-383 261-698 (764)
96 KOG0643 Translation initiation 100.0 1.2E-27 2.7E-32 185.8 25.8 263 114-403 5-319 (327)
97 KOG4283 Transcription-coupled 100.0 6.7E-28 1.5E-32 189.9 24.1 301 55-381 38-362 (397)
98 KOG0310 Conserved WD40 repeat- 100.0 3.1E-28 6.7E-33 204.4 22.9 240 119-384 26-268 (487)
99 KOG0640 mRNA cleavage stimulat 100.0 3.5E-28 7.7E-33 192.8 21.7 259 108-383 101-382 (430)
100 KOG0275 Conserved WD40 repeat- 100.0 8.1E-29 1.7E-33 197.7 17.9 277 114-427 208-492 (508)
101 KOG0294 WD40 repeat-containing 100.0 1.3E-27 2.9E-32 189.9 24.7 248 50-344 33-283 (362)
102 KOG1539 WD repeat protein [Gen 100.0 2.1E-27 4.6E-32 211.6 28.0 323 35-400 183-647 (910)
103 KOG0294 WD40 repeat-containing 100.0 2.4E-27 5.3E-32 188.4 25.2 274 74-384 3-281 (362)
104 KOG1408 WD40 repeat protein [F 100.0 1.1E-27 2.4E-32 210.0 25.3 179 222-402 459-714 (1080)
105 KOG1332 Vesicle coat complex C 100.0 2.9E-28 6.3E-33 186.8 18.3 260 54-342 5-286 (299)
106 KOG0268 Sof1-like rRNA process 100.0 8E-29 1.7E-33 200.3 15.8 265 116-410 63-354 (433)
107 KOG0639 Transducin-like enhanc 100.0 5.4E-28 1.2E-32 203.7 20.9 285 57-381 416-701 (705)
108 KOG1273 WD40 repeat protein [G 100.0 2E-27 4.3E-32 188.9 22.8 281 63-381 26-319 (405)
109 KOG0283 WD40 repeat-containing 100.0 4.4E-28 9.5E-33 216.8 21.1 266 117-404 265-579 (712)
110 KOG0289 mRNA splicing factor [ 100.0 4.5E-27 9.8E-32 194.6 25.1 251 52-341 253-505 (506)
111 KOG0274 Cdc4 and related F-box 100.0 2.3E-27 5E-32 214.5 25.4 248 55-353 244-493 (537)
112 KOG0973 Histone transcription 100.0 1.8E-27 3.9E-32 218.5 24.7 271 51-343 60-356 (942)
113 KOG4328 WD40 protein [Function 100.0 3E-27 6.5E-32 196.9 23.3 300 52-381 178-492 (498)
114 KOG0278 Serine/threonine kinas 100.0 3.8E-28 8.2E-33 186.8 15.7 267 113-406 8-302 (334)
115 KOG0269 WD40 repeat-containing 100.0 2.9E-27 6.4E-32 209.1 21.0 303 61-397 40-364 (839)
116 KOG0300 WD40 repeat-containing 100.0 7.3E-27 1.6E-31 186.1 21.1 250 115-383 144-427 (481)
117 KOG0647 mRNA export protein (c 100.0 2.7E-26 5.9E-31 181.4 23.6 258 119-402 27-314 (347)
118 KOG0288 WD40 repeat protein Ti 100.0 2.2E-27 4.8E-32 195.1 18.1 244 52-340 211-459 (459)
119 KOG0639 Transducin-like enhanc 100.0 5E-27 1.1E-31 197.9 19.1 243 114-381 414-660 (705)
120 KOG0299 U3 snoRNP-associated p 100.0 3E-26 6.4E-31 191.2 23.4 246 113-381 136-407 (479)
121 KOG2445 Nuclear pore complex c 100.0 1.9E-25 4.1E-30 177.2 26.7 265 55-342 8-318 (361)
122 KOG1407 WD40 repeat protein [F 100.0 1.2E-25 2.6E-30 174.3 24.7 234 54-333 58-293 (313)
123 KOG0308 Conserved WD40 repeat- 100.0 5.9E-27 1.3E-31 203.3 19.4 254 135-404 34-330 (735)
124 KOG2055 WD40 repeat protein [G 100.0 9.4E-26 2E-30 188.2 25.4 295 54-383 207-511 (514)
125 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-24 2.9E-29 190.0 34.2 281 72-411 1-289 (300)
126 KOG1332 Vesicle coat complex C 100.0 1.6E-26 3.6E-31 177.3 18.0 244 117-381 9-283 (299)
127 KOG2106 Uncharacterized conser 100.0 2.7E-24 5.9E-29 181.6 32.8 323 60-421 200-603 (626)
128 KOG0321 WD40 repeat-containing 100.0 6.8E-26 1.5E-30 196.3 23.9 292 66-382 55-389 (720)
129 KOG2106 Uncharacterized conser 99.9 7.2E-25 1.6E-29 185.0 28.4 328 52-418 96-495 (626)
130 KOG0646 WD40 repeat protein [G 99.9 6.1E-26 1.3E-30 189.7 21.4 285 73-388 51-354 (476)
131 KOG1539 WD repeat protein [Gen 99.9 3E-24 6.6E-29 191.7 32.9 308 72-411 124-616 (910)
132 KOG1036 Mitotic spindle checkp 99.9 7.7E-25 1.7E-29 173.9 24.8 237 119-384 13-262 (323)
133 KOG2096 WD40 repeat protein [G 99.9 5.7E-25 1.2E-29 175.3 23.5 278 114-422 81-381 (420)
134 KOG0270 WD40 repeat-containing 99.9 2.8E-25 6E-30 184.6 21.1 264 64-348 177-455 (463)
135 KOG1445 Tumor-specific antigen 99.9 3.1E-25 6.6E-30 192.5 21.6 140 242-383 600-749 (1012)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-23 2.5E-28 184.1 31.7 263 55-364 26-300 (300)
137 KOG0269 WD40 repeat-containing 99.9 5.5E-26 1.2E-30 201.1 16.7 247 63-345 90-343 (839)
138 KOG2445 Nuclear pore complex c 99.9 2.7E-24 5.9E-29 170.6 23.8 254 114-381 8-315 (361)
139 KOG4227 WD40 repeat protein [G 99.9 1.2E-24 2.6E-29 178.3 22.4 307 54-387 50-390 (609)
140 KOG2048 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 181.3 32.1 284 55-381 20-316 (691)
141 KOG0646 WD40 repeat protein [G 99.9 1.9E-24 4.1E-29 180.8 23.1 225 139-383 51-306 (476)
142 KOG0267 Microtubule severing p 99.9 1.5E-26 3.2E-31 203.2 10.5 221 137-376 39-260 (825)
143 KOG0302 Ribosome Assembly prot 99.9 8.3E-25 1.8E-29 178.1 18.9 260 55-376 146-431 (440)
144 KOG0650 WD40 repeat nucleolar 99.9 1.4E-24 3E-29 187.0 20.5 265 97-381 378-677 (733)
145 KOG1274 WD40 repeat protein [G 99.9 6.8E-24 1.5E-28 191.5 25.6 245 116-384 10-262 (933)
146 KOG0322 G-protein beta subunit 99.9 5.7E-25 1.2E-29 170.8 15.4 291 54-382 8-321 (323)
147 KOG4283 Transcription-coupled 99.9 2.6E-23 5.6E-28 164.2 22.5 215 117-346 41-280 (397)
148 KOG0270 WD40 repeat-containing 99.9 9.2E-24 2E-28 175.7 19.7 229 175-408 175-456 (463)
149 KOG2055 WD40 repeat protein [G 99.9 3.6E-23 7.9E-28 172.9 22.8 238 120-380 214-463 (514)
150 KOG0267 Microtubule severing p 99.9 2.6E-25 5.7E-30 195.4 10.3 240 52-334 20-260 (825)
151 KOG0321 WD40 repeat-containing 99.9 3.2E-23 7E-28 179.9 22.5 302 52-381 92-442 (720)
152 KOG0301 Phospholipase A2-activ 99.9 2.3E-23 4.9E-28 182.6 21.3 255 114-401 9-288 (745)
153 KOG1007 WD repeat protein TSSC 99.9 1.4E-22 3.1E-27 159.6 23.6 277 81-383 39-360 (370)
154 KOG0307 Vesicle coat complex C 99.9 1.4E-24 3.1E-29 200.6 14.3 291 65-384 11-327 (1049)
155 KOG4378 Nuclear protein COP1 [ 99.9 3.6E-23 7.7E-28 174.6 21.2 263 63-366 37-305 (673)
156 KOG1034 Transcriptional repres 99.9 8.2E-23 1.8E-27 163.7 19.4 301 52-382 30-381 (385)
157 KOG0302 Ribosome Assembly prot 99.9 3.5E-23 7.7E-28 168.7 17.0 210 175-403 153-380 (440)
158 KOG4328 WD40 protein [Function 99.9 1.5E-22 3.2E-27 169.1 20.7 246 116-380 183-446 (498)
159 KOG2048 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 169.3 29.1 256 55-343 63-320 (691)
160 KOG1273 WD40 repeat protein [G 99.9 3.8E-22 8.2E-27 159.1 21.0 235 176-420 26-299 (405)
161 KOG1517 Guanine nucleotide bin 99.9 1.2E-21 2.6E-26 179.6 25.1 296 58-382 1062-1379(1387)
162 KOG0290 Conserved WD40 repeat- 99.9 2.3E-21 5E-26 153.0 22.4 259 120-388 45-322 (364)
163 KOG1334 WD40 repeat protein [G 99.9 2.2E-22 4.8E-27 169.5 16.1 305 49-382 131-464 (559)
164 KOG1009 Chromatin assembly com 99.9 2.8E-21 6E-26 159.3 21.3 288 60-380 13-368 (434)
165 KOG1538 Uncharacterized conser 99.9 3.7E-21 8E-26 168.3 23.0 270 62-382 14-291 (1081)
166 KOG1188 WD40 repeat protein [G 99.9 1.8E-21 4E-26 156.9 19.4 278 73-382 41-344 (376)
167 KOG1034 Transcriptional repres 99.9 1.7E-21 3.6E-26 156.3 18.7 256 58-342 87-383 (385)
168 KOG1587 Cytoplasmic dynein int 99.9 2.1E-20 4.5E-25 168.3 27.7 274 82-383 222-515 (555)
169 KOG4378 Nuclear protein COP1 [ 99.9 8E-22 1.7E-26 166.5 17.4 221 64-324 83-305 (673)
170 KOG1007 WD repeat protein TSSC 99.9 6.7E-21 1.4E-25 150.2 20.8 266 54-342 57-361 (370)
171 KOG1587 Cytoplasmic dynein int 99.9 1.7E-20 3.6E-25 168.9 24.5 265 60-343 242-517 (555)
172 PRK11028 6-phosphogluconolacto 99.9 4.4E-19 9.5E-24 156.4 32.5 279 75-401 5-304 (330)
173 KOG0307 Vesicle coat complex C 99.9 7.8E-22 1.7E-26 182.7 15.0 253 62-345 66-330 (1049)
174 KOG1310 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 161.0 21.4 218 52-296 42-303 (758)
175 KOG2919 Guanine nucleotide-bin 99.9 1.5E-20 3.3E-25 150.6 19.7 234 175-411 51-338 (406)
176 KOG1963 WD40 repeat protein [G 99.9 4.3E-19 9.3E-24 160.4 29.9 248 63-343 19-323 (792)
177 COG2319 FOG: WD40 repeat [Gene 99.9 2.6E-18 5.6E-23 158.3 35.6 317 55-411 60-410 (466)
178 KOG0642 Cell-cycle nuclear pro 99.9 4.8E-21 1E-25 164.4 15.4 295 73-382 243-559 (577)
179 KOG0303 Actin-binding protein 99.9 4.9E-20 1.1E-24 151.5 20.3 240 51-323 72-320 (472)
180 KOG1445 Tumor-specific antigen 99.9 7.4E-20 1.6E-24 159.4 22.1 180 222-406 627-849 (1012)
181 KOG1963 WD40 repeat protein [G 99.9 9.6E-19 2.1E-23 158.2 29.6 306 52-403 197-540 (792)
182 KOG1538 Uncharacterized conser 99.9 3E-20 6.6E-25 162.7 18.9 243 52-341 45-292 (1081)
183 KOG1009 Chromatin assembly com 99.9 1.5E-19 3.1E-24 149.3 20.8 278 51-346 56-376 (434)
184 KOG0644 Uncharacterized conser 99.9 2.9E-21 6.4E-26 172.9 11.1 290 47-383 177-467 (1113)
185 KOG0649 WD40 repeat protein [G 99.9 7.8E-19 1.7E-23 135.4 22.4 231 135-381 19-271 (325)
186 KOG0290 Conserved WD40 repeat- 99.9 3.5E-19 7.7E-24 140.7 20.9 286 62-374 46-356 (364)
187 KOG0303 Actin-binding protein 99.8 1.6E-19 3.5E-24 148.5 19.1 181 218-404 77-297 (472)
188 KOG1524 WD40 repeat-containing 99.8 6E-19 1.3E-23 150.8 21.1 271 58-381 12-283 (737)
189 KOG0649 WD40 repeat protein [G 99.8 5.8E-18 1.3E-22 130.6 23.2 281 62-381 12-313 (325)
190 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-19 3.1E-24 155.4 15.5 268 54-354 288-573 (577)
191 PRK11028 6-phosphogluconolacto 99.8 3.9E-17 8.5E-22 144.0 31.0 253 61-342 35-304 (330)
192 KOG1240 Protein kinase contain 99.8 2.2E-17 4.8E-22 154.3 29.5 272 47-343 1035-1335(1431)
193 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-16 3.2E-21 146.6 35.6 291 51-385 146-443 (466)
194 KOG2110 Uncharacterized conser 99.8 2.6E-16 5.6E-21 128.9 32.1 239 61-343 6-249 (391)
195 PRK01742 tolB translocation pr 99.8 2.7E-18 5.8E-23 156.0 22.3 236 81-365 183-426 (429)
196 KOG2394 WD40 protein DMR-N9 [G 99.8 2.1E-18 4.5E-23 147.6 19.5 241 135-407 182-458 (636)
197 KOG1188 WD40 repeat protein [G 99.8 6.8E-18 1.5E-22 136.5 20.9 197 139-349 41-249 (376)
198 KOG1354 Serine/threonine prote 99.8 1.4E-18 3.1E-23 140.6 16.8 277 60-344 25-361 (433)
199 KOG0771 Prolactin regulatory e 99.8 3.7E-17 8E-22 136.1 22.2 194 177-380 148-350 (398)
200 KOG2110 Uncharacterized conser 99.8 8.7E-17 1.9E-21 131.6 23.0 233 121-385 7-249 (391)
201 KOG1523 Actin-related protein 99.8 1.3E-16 2.8E-21 128.2 23.4 230 60-322 10-259 (361)
202 KOG0771 Prolactin regulatory e 99.8 8E-18 1.7E-22 140.0 16.8 201 64-297 148-355 (398)
203 KOG2139 WD40 repeat protein [G 99.8 2.6E-16 5.7E-21 128.5 24.1 284 60-379 98-426 (445)
204 KOG1272 WD40-repeat-containing 99.8 4E-19 8.6E-24 149.2 7.9 231 127-382 130-360 (545)
205 KOG4497 Uncharacterized conser 99.8 1.5E-16 3.2E-21 128.3 22.0 277 65-385 13-392 (447)
206 KOG1523 Actin-related protein 99.8 9.4E-17 2E-21 128.9 19.4 201 175-382 12-234 (361)
207 KOG2111 Uncharacterized conser 99.8 7.2E-15 1.6E-19 118.2 29.3 240 63-344 8-258 (346)
208 KOG1524 WD40 repeat-containing 99.8 3.7E-17 8E-22 140.0 17.0 209 73-340 76-284 (737)
209 PF02239 Cytochrom_D1: Cytochr 99.8 5.8E-15 1.3E-19 129.8 31.5 291 73-410 6-356 (369)
210 KOG1517 Guanine nucleotide bin 99.8 3.6E-16 7.7E-21 144.3 23.9 244 134-383 1072-1332(1387)
211 KOG2321 WD40 repeat protein [G 99.8 4.1E-16 9E-21 134.8 22.8 277 58-381 49-340 (703)
212 KOG1272 WD40-repeat-containing 99.8 6.9E-18 1.5E-22 141.9 11.6 264 62-375 131-400 (545)
213 KOG1240 Protein kinase contain 99.7 6E-16 1.3E-20 145.0 24.1 222 115-351 1044-1282(1431)
214 PRK01742 tolB translocation pr 99.7 2.6E-16 5.6E-21 143.0 21.4 204 147-375 183-392 (429)
215 KOG1334 WD40 repeat protein [G 99.7 6.2E-17 1.3E-21 137.0 15.5 279 116-411 139-476 (559)
216 KOG2315 Predicted translation 99.7 1.1E-14 2.5E-19 125.8 28.1 289 62-403 36-392 (566)
217 KOG3881 Uncharacterized conser 99.7 1.4E-15 3E-20 125.6 21.3 275 59-365 54-342 (412)
218 PF08662 eIF2A: Eukaryotic tra 99.7 8.9E-16 1.9E-20 122.6 19.6 159 226-404 9-182 (194)
219 KOG0322 G-protein beta subunit 99.7 5E-16 1.1E-20 121.5 16.5 272 36-341 37-322 (323)
220 KOG3881 Uncharacterized conser 99.7 1.7E-15 3.7E-20 125.0 20.5 253 118-385 54-321 (412)
221 PRK03629 tolB translocation pr 99.7 6.2E-15 1.3E-19 133.7 26.1 219 117-365 196-428 (429)
222 PRK02889 tolB translocation pr 99.7 5E-15 1.1E-19 134.5 25.3 220 117-365 193-425 (427)
223 KOG4227 WD40 repeat protein [G 99.7 4.6E-16 1E-20 128.4 16.6 251 115-381 52-319 (609)
224 KOG2139 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 120.8 21.8 236 120-375 99-366 (445)
225 KOG2111 Uncharacterized conser 99.7 5.3E-15 1.1E-19 119.0 20.7 233 121-382 7-254 (346)
226 PF10282 Lactonase: Lactonase, 99.7 7.6E-13 1.6E-17 116.8 35.9 249 134-401 44-322 (345)
227 PRK04922 tolB translocation pr 99.7 1.4E-14 2.9E-19 132.1 24.9 218 117-364 201-432 (433)
228 PF10282 Lactonase: Lactonase, 99.7 3.8E-13 8.2E-18 118.7 33.0 277 62-362 38-345 (345)
229 KOG4497 Uncharacterized conser 99.7 5.2E-15 1.1E-19 119.5 19.0 187 134-341 16-239 (447)
230 KOG1409 Uncharacterized conser 99.7 1.4E-14 3.1E-19 117.7 19.8 251 50-343 14-271 (404)
231 PRK03629 tolB translocation pr 99.7 6.2E-14 1.4E-18 127.2 26.4 205 149-376 180-395 (429)
232 KOG0644 Uncharacterized conser 99.7 2.7E-16 5.8E-21 141.6 10.0 232 115-382 186-424 (1113)
233 PRK05137 tolB translocation pr 99.7 1.3E-13 2.8E-18 126.0 27.6 219 116-365 198-433 (435)
234 PF08662 eIF2A: Eukaryotic tra 99.7 2.3E-14 5.1E-19 114.4 19.5 157 178-350 10-186 (194)
235 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.3E-18 120.8 26.4 252 64-351 40-356 (369)
236 KOG2314 Translation initiation 99.7 6.6E-14 1.4E-18 120.9 23.2 293 63-406 213-578 (698)
237 KOG0974 WD-repeat protein WDR6 99.7 2.9E-14 6.2E-19 131.9 21.4 280 61-385 8-289 (967)
238 KOG0280 Uncharacterized conser 99.6 1.3E-13 2.8E-18 109.9 21.5 263 81-373 45-320 (339)
239 PRK04922 tolB translocation pr 99.6 1E-13 2.2E-18 126.5 23.1 204 148-374 184-398 (433)
240 PRK02889 tolB translocation pr 99.6 5.7E-14 1.2E-18 127.6 21.0 205 148-375 176-391 (427)
241 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 125.2 14.7 222 115-349 46-310 (758)
242 PRK05137 tolB translocation pr 99.6 2.8E-13 6.1E-18 123.8 24.2 204 148-374 182-396 (435)
243 KOG2041 WD40 repeat protein [G 99.6 6E-13 1.3E-17 118.6 23.7 318 58-405 12-373 (1189)
244 KOG2394 WD40 protein DMR-N9 [G 99.6 5.8E-14 1.3E-18 120.8 15.9 202 176-382 126-360 (636)
245 KOG2321 WD40 repeat protein [G 99.6 3.2E-13 6.8E-18 117.3 20.1 275 82-382 7-300 (703)
246 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.3E-11 9.4E-16 102.9 32.5 280 82-418 27-347 (352)
247 COG5354 Uncharacterized protei 99.6 2.3E-12 4.9E-17 110.5 23.8 291 59-406 31-400 (561)
248 COG5170 CDC55 Serine/threonine 99.6 2.4E-14 5.3E-19 114.9 10.9 273 59-343 25-368 (460)
249 COG2706 3-carboxymuconate cycl 99.6 1.4E-10 3.1E-15 95.9 32.5 282 81-402 15-322 (346)
250 PRK04792 tolB translocation pr 99.6 4.4E-12 9.5E-17 115.7 26.2 219 117-365 215-447 (448)
251 COG2706 3-carboxymuconate cycl 99.5 1.7E-10 3.7E-15 95.4 31.2 280 57-363 36-345 (346)
252 TIGR02800 propeller_TolB tol-p 99.5 8.3E-12 1.8E-16 114.3 26.1 214 118-362 188-416 (417)
253 KOG4547 WD40 repeat-containing 99.5 2E-12 4.3E-17 113.0 20.3 207 136-381 3-217 (541)
254 PRK00178 tolB translocation pr 99.5 1.1E-11 2.5E-16 113.5 26.4 219 117-365 196-428 (430)
255 PRK01029 tolB translocation pr 99.5 2.3E-11 5E-16 110.1 27.0 222 120-366 185-426 (428)
256 KOG1409 Uncharacterized conser 99.5 2.3E-12 5.1E-17 105.1 17.7 233 136-383 34-269 (404)
257 KOG1354 Serine/threonine prote 99.5 6.8E-12 1.5E-16 102.4 20.3 255 118-382 24-357 (433)
258 TIGR02800 propeller_TolB tol-p 99.5 7.2E-12 1.6E-16 114.7 22.7 205 148-375 170-385 (417)
259 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.4E-10 3.1E-15 99.7 28.3 249 68-350 53-338 (352)
260 PRK01029 tolB translocation pr 99.5 4.8E-11 1E-15 108.0 26.7 225 148-405 165-407 (428)
261 KOG4547 WD40 repeat-containing 99.5 1.2E-11 2.5E-16 108.2 20.1 201 69-297 2-221 (541)
262 PRK04792 tolB translocation pr 99.5 5.1E-11 1.1E-15 108.8 25.2 203 149-374 199-412 (448)
263 PRK00178 tolB translocation pr 99.5 1.1E-10 2.3E-15 107.1 26.9 203 149-374 180-393 (430)
264 COG5354 Uncharacterized protei 99.5 1.5E-10 3.2E-15 99.7 25.1 280 62-377 73-422 (561)
265 KOG4190 Uncharacterized conser 99.4 1.2E-12 2.5E-17 113.6 11.8 296 52-379 727-1031(1034)
266 KOG0309 Conserved WD40 repeat- 99.4 3.7E-12 8E-17 114.1 12.6 297 60-401 24-339 (1081)
267 KOG0974 WD-repeat protein WDR6 99.4 2.5E-11 5.5E-16 112.9 17.8 201 60-297 87-289 (967)
268 PLN02919 haloacid dehalogenase 99.4 1.1E-09 2.4E-14 109.3 29.7 248 134-385 575-889 (1057)
269 KOG0309 Conserved WD40 repeat- 99.4 1.2E-11 2.6E-16 110.9 13.4 237 111-367 16-258 (1081)
270 KOG2315 Predicted translation 99.4 3.5E-10 7.6E-15 98.5 21.6 256 64-365 129-411 (566)
271 KOG1064 RAVE (regulator of V-A 99.4 8.8E-12 1.9E-16 121.9 13.0 194 120-351 2209-2407(2439)
272 KOG1912 WD40 repeat protein [G 99.3 1.8E-09 3.9E-14 97.9 25.3 295 51-373 46-486 (1062)
273 TIGR03300 assembly_YfgL outer 99.3 5.6E-09 1.2E-13 94.1 29.0 263 71-383 64-337 (377)
274 COG4946 Uncharacterized protei 99.3 3.3E-08 7E-13 84.9 30.0 186 183-377 276-466 (668)
275 KOG1064 RAVE (regulator of V-A 99.3 1.6E-11 3.5E-16 120.1 11.3 194 55-298 2203-2400(2439)
276 PF04762 IKI3: IKI3 family; I 99.3 9.6E-09 2.1E-13 100.8 30.0 289 59-382 74-454 (928)
277 PLN02919 haloacid dehalogenase 99.3 7.8E-09 1.7E-13 103.4 29.8 268 64-346 571-892 (1057)
278 TIGR03300 assembly_YfgL outer 99.3 5E-09 1.1E-13 94.4 25.8 266 71-379 104-374 (377)
279 COG4946 Uncharacterized protei 99.3 1.9E-08 4.1E-13 86.3 27.2 174 68-284 327-507 (668)
280 PF08450 SGL: SMP-30/Gluconola 99.3 2.4E-08 5.3E-13 84.1 28.2 219 137-371 11-242 (246)
281 PF15492 Nbas_N: Neuroblastoma 99.3 9E-09 2E-13 82.9 23.3 251 66-354 3-271 (282)
282 KOG4532 WD40-like repeat conta 99.2 7.2E-09 1.6E-13 82.2 20.5 245 64-343 71-332 (344)
283 KOG0280 Uncharacterized conser 99.2 2.1E-09 4.5E-14 86.3 17.7 252 62-344 71-335 (339)
284 PRK04043 tolB translocation pr 99.2 3.4E-08 7.5E-13 89.0 25.8 207 121-359 189-416 (419)
285 KOG2041 WD40 repeat protein [G 99.2 3.3E-09 7.1E-14 95.4 18.6 252 53-342 64-337 (1189)
286 COG5170 CDC55 Serine/threonine 99.2 2.4E-09 5.1E-14 86.7 15.9 255 118-382 25-365 (460)
287 PF04762 IKI3: IKI3 family; I 99.2 1.3E-07 2.8E-12 93.0 30.9 246 118-381 74-376 (928)
288 KOG3914 WD repeat protein WDR4 99.1 1.3E-09 2.8E-14 91.3 13.3 168 175-351 64-232 (390)
289 PF15492 Nbas_N: Neuroblastoma 99.1 2E-07 4.4E-12 75.3 24.0 231 135-385 6-260 (282)
290 KOG1645 RING-finger-containing 99.1 2.4E-08 5.1E-13 83.9 19.1 239 114-373 188-451 (463)
291 KOG4532 WD40-like repeat conta 99.1 3.3E-08 7.1E-13 78.6 18.5 189 186-383 85-281 (344)
292 PRK04043 tolB translocation pr 99.1 1.4E-07 3.1E-12 85.0 24.0 193 62-298 189-402 (419)
293 PF13360 PQQ_2: PQQ-like domai 99.1 3.5E-07 7.5E-12 76.9 25.1 192 137-348 35-236 (238)
294 KOG3914 WD repeat protein WDR4 99.0 6.3E-09 1.4E-13 87.3 13.6 159 227-410 67-232 (390)
295 KOG1912 WD40 repeat protein [G 99.0 9.5E-08 2E-12 87.1 21.9 244 63-343 18-305 (1062)
296 KOG4190 Uncharacterized conser 99.0 1.9E-09 4.1E-14 94.1 10.7 242 114-381 730-985 (1034)
297 KOG0882 Cyclophilin-related pe 99.0 2.7E-08 6E-13 84.7 16.9 258 57-349 6-312 (558)
298 PF07433 DUF1513: Protein of u 99.0 9E-07 1.9E-11 73.9 25.1 246 64-373 8-275 (305)
299 KOG4714 Nucleoporin [Nuclear s 99.0 8.9E-09 1.9E-13 81.4 11.7 96 245-343 159-255 (319)
300 PF00400 WD40: WD domain, G-be 99.0 1.3E-09 2.8E-14 62.1 5.1 37 52-88 3-39 (39)
301 KOG2695 WD40 repeat protein [G 99.0 3E-09 6.5E-14 87.4 8.9 155 185-353 225-387 (425)
302 PRK11138 outer membrane biogen 99.0 1.2E-06 2.7E-11 79.3 26.0 274 71-383 68-352 (394)
303 KOG4714 Nucleoporin [Nuclear s 98.9 7.1E-08 1.5E-12 76.4 14.9 166 54-254 83-255 (319)
304 PRK11138 outer membrane biogen 98.9 3.5E-06 7.6E-11 76.4 27.2 268 72-380 120-390 (394)
305 KOG1832 HIV-1 Vpr-binding prot 98.9 3E-09 6.5E-14 97.9 6.9 232 43-330 1084-1319(1516)
306 KOG2314 Translation initiation 98.9 7.1E-07 1.5E-11 78.4 20.4 260 65-371 310-599 (698)
307 PF08450 SGL: SMP-30/Gluconola 98.9 1.4E-05 3.1E-10 67.3 27.8 221 65-329 4-242 (246)
308 PF07433 DUF1513: Protein of u 98.9 6.5E-06 1.4E-10 68.8 24.5 218 175-417 6-263 (305)
309 KOG2695 WD40 repeat protein [G 98.8 4.3E-09 9.3E-14 86.5 5.0 136 239-381 228-373 (425)
310 KOG1275 PAB-dependent poly(A) 98.8 2.9E-07 6.3E-12 85.5 16.2 178 186-381 149-339 (1118)
311 PF00400 WD40: WD domain, G-be 98.8 3.2E-08 7E-13 56.3 6.2 39 255-294 1-39 (39)
312 KOG1920 IkappaB kinase complex 98.8 7.1E-06 1.5E-10 79.1 24.6 265 60-366 68-346 (1265)
313 PF13360 PQQ_2: PQQ-like domai 98.8 7.4E-06 1.6E-10 68.8 22.8 216 147-381 2-227 (238)
314 PRK02888 nitrous-oxide reducta 98.8 9.4E-06 2E-10 74.4 24.2 210 134-373 200-450 (635)
315 COG0823 TolB Periplasmic compo 98.7 6.4E-06 1.4E-10 74.0 22.9 186 175-376 194-391 (425)
316 PF06433 Me-amine-dh_H: Methyl 98.7 4.3E-05 9.3E-10 64.9 25.2 255 65-352 40-330 (342)
317 KOG2114 Vacuolar assembly/sort 98.7 9.2E-06 2E-10 75.5 22.8 208 135-355 32-257 (933)
318 KOG1275 PAB-dependent poly(A) 98.7 3.2E-07 7E-12 85.2 13.3 184 137-340 146-340 (1118)
319 KOG2066 Vacuolar assembly/sort 98.7 1.2E-06 2.7E-11 80.4 16.7 183 60-296 39-233 (846)
320 KOG2114 Vacuolar assembly/sort 98.7 1.1E-05 2.4E-10 74.9 22.6 202 67-299 30-246 (933)
321 KOG0882 Cyclophilin-related pe 98.7 3.4E-07 7.3E-12 78.3 11.0 210 175-411 11-241 (558)
322 KOG1832 HIV-1 Vpr-binding prot 98.6 5.8E-08 1.3E-12 89.8 5.5 181 174-373 1102-1285(1516)
323 PF06977 SdiA-regulated: SdiA- 98.6 0.0001 2.2E-09 61.0 23.8 212 54-293 15-247 (248)
324 KOG1008 Uncharacterized conser 98.6 8.2E-08 1.8E-12 85.7 5.8 203 62-297 58-276 (783)
325 KOG1645 RING-finger-containing 98.6 1.4E-06 3E-11 73.6 12.3 85 217-302 188-272 (463)
326 PF08553 VID27: VID27 cytoplas 98.6 9.1E-06 2E-10 77.3 18.8 147 138-295 493-646 (794)
327 KOG1920 IkappaB kinase complex 98.5 3.2E-05 6.8E-10 74.9 22.1 237 120-382 69-320 (1265)
328 KOG3617 WD40 and TPR repeat-co 98.5 9.5E-06 2.1E-10 75.3 17.9 109 64-203 19-132 (1416)
329 PF06433 Me-amine-dh_H: Methyl 98.5 5.2E-05 1.1E-09 64.4 20.8 250 135-414 44-333 (342)
330 PF08596 Lgl_C: Lethal giant l 98.5 2.7E-05 5.8E-10 69.3 20.1 261 62-333 3-327 (395)
331 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00042 9.1E-09 55.7 25.2 101 72-201 63-164 (354)
332 PRK02888 nitrous-oxide reducta 98.4 9E-05 1.9E-09 68.2 21.5 149 231-385 201-405 (635)
333 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00041 8.9E-09 62.8 25.2 198 149-366 62-271 (410)
334 KOG1008 Uncharacterized conser 98.4 3.7E-07 8E-12 81.7 5.5 203 175-390 58-281 (783)
335 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00033 7.1E-09 62.5 24.1 276 69-373 1-346 (353)
336 PF11768 DUF3312: Protein of u 98.4 0.00063 1.4E-08 61.3 25.2 74 263-343 257-330 (545)
337 COG0823 TolB Periplasmic compo 98.4 5.8E-05 1.3E-09 68.0 18.9 179 135-332 201-389 (425)
338 KOG2066 Vacuolar assembly/sort 98.4 1.9E-05 4.1E-10 73.0 15.6 168 175-369 41-220 (846)
339 cd00216 PQQ_DH Dehydrogenases 98.4 0.0009 1.9E-08 62.4 27.1 253 73-352 111-434 (488)
340 PF11768 DUF3312: Protein of u 98.4 2.1E-05 4.5E-10 70.5 15.1 91 291-384 239-329 (545)
341 cd00216 PQQ_DH Dehydrogenases 98.4 0.00067 1.5E-08 63.2 25.9 281 72-383 61-423 (488)
342 KOG3617 WD40 and TPR repeat-co 98.4 2.4E-05 5.2E-10 72.8 15.5 107 178-296 20-131 (1416)
343 PF03178 CPSF_A: CPSF A subuni 98.3 0.00033 7.1E-09 61.7 21.7 179 149-342 3-202 (321)
344 PF08553 VID27: VID27 cytoplas 98.3 0.00015 3.2E-09 69.4 20.3 141 234-378 492-642 (794)
345 PF08596 Lgl_C: Lethal giant l 98.3 0.00046 1E-08 61.6 21.5 239 121-374 3-326 (395)
346 KOG2395 Protein involved in va 98.2 8.2E-05 1.8E-09 65.7 15.6 145 140-296 348-500 (644)
347 PF00780 CNH: CNH domain; Int 98.2 0.003 6.5E-08 54.3 24.7 235 71-352 6-265 (275)
348 PF04053 Coatomer_WDAD: Coatom 98.2 0.00039 8.6E-09 62.9 19.3 163 175-365 34-207 (443)
349 COG3391 Uncharacterized conser 98.2 0.0029 6.2E-08 57.0 24.7 202 63-299 76-286 (381)
350 COG3391 Uncharacterized conser 98.2 0.0042 9.1E-08 55.9 25.4 199 175-383 75-282 (381)
351 PF06977 SdiA-regulated: SdiA- 98.1 0.0032 6.9E-08 52.2 25.0 207 120-339 22-247 (248)
352 COG3386 Gluconolactonase [Carb 98.1 0.0036 7.8E-08 53.9 23.2 225 135-373 33-274 (307)
353 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0024 5.2E-08 57.0 21.6 230 135-371 1-297 (353)
354 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0029 6.4E-08 56.4 21.6 104 309-414 304-411 (415)
355 PF04053 Coatomer_WDAD: Coatom 98.0 0.0025 5.4E-08 57.9 21.2 222 59-343 31-263 (443)
356 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00057 1.2E-08 47.8 13.2 105 122-249 2-110 (111)
357 PF02897 Peptidase_S9_N: Proly 98.0 0.012 2.5E-07 54.1 27.5 248 62-346 125-408 (414)
358 PF14583 Pectate_lyase22: Olig 98.0 0.0043 9.3E-08 54.2 21.5 262 124-404 33-331 (386)
359 PF14583 Pectate_lyase22: Olig 98.0 0.0084 1.8E-07 52.4 27.3 267 63-374 38-370 (386)
360 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0019 4E-08 52.2 17.5 129 229-364 17-145 (354)
361 KOG3621 WD40 repeat-containing 98.0 7.2E-05 1.6E-09 68.3 10.8 133 229-363 40-179 (726)
362 KOG3621 WD40 repeat-containing 98.0 0.00016 3.5E-09 66.1 12.9 158 175-344 35-199 (726)
363 PF03178 CPSF_A: CPSF A subuni 98.0 0.0081 1.7E-07 52.9 23.6 213 114-339 18-262 (321)
364 PF00780 CNH: CNH domain; Int 97.9 0.0099 2.1E-07 51.1 27.2 239 137-412 6-266 (275)
365 PF04841 Vps16_N: Vps16, N-ter 97.9 0.015 3.2E-07 52.9 29.9 184 120-324 81-271 (410)
366 smart00320 WD40 WD40 repeats. 97.9 2.4E-05 5.1E-10 43.8 4.7 36 53-88 5-40 (40)
367 KOG4640 Anaphase-promoting com 97.9 0.0001 2.2E-09 66.5 9.5 94 223-322 21-115 (665)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.026 5.6E-07 53.1 28.9 211 72-300 69-337 (527)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.035 7.5E-07 52.3 28.5 31 323-353 471-501 (527)
370 COG3204 Uncharacterized protei 97.8 0.015 3.3E-07 48.2 19.3 181 57-261 82-270 (316)
371 PRK13616 lipoprotein LpqB; Pro 97.6 0.025 5.5E-07 53.7 21.8 185 175-379 351-563 (591)
372 smart00320 WD40 WD40 repeats. 97.6 0.00024 5.1E-09 39.5 5.7 38 256-294 3-40 (40)
373 KOG4640 Anaphase-promoting com 97.6 0.00044 9.5E-09 62.6 9.3 93 266-364 21-115 (665)
374 COG3490 Uncharacterized protei 97.6 0.029 6.2E-07 46.3 18.4 202 175-383 69-309 (366)
375 PRK13616 lipoprotein LpqB; Pro 97.6 0.017 3.6E-07 54.8 19.8 193 61-292 350-564 (591)
376 COG3490 Uncharacterized protei 97.6 0.0044 9.5E-08 50.9 13.7 199 67-294 120-346 (366)
377 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.014 3.1E-07 40.9 14.7 97 230-338 10-110 (111)
378 PF05694 SBP56: 56kDa selenium 97.5 0.058 1.3E-06 47.8 21.3 220 61-302 65-348 (461)
379 KOG2395 Protein involved in va 97.5 0.009 2E-07 53.4 15.5 137 237-376 348-493 (644)
380 KOG4499 Ca2+-binding protein R 97.5 0.036 7.8E-07 44.4 18.2 98 267-364 159-263 (310)
381 KOG1897 Damage-specific DNA bi 97.5 0.13 2.7E-06 50.1 28.3 129 247-380 752-894 (1096)
382 PF05096 Glu_cyclase_2: Glutam 97.4 0.052 1.1E-06 45.0 21.5 187 60-284 44-249 (264)
383 KOG2444 WD40 repeat protein [G 97.4 0.00055 1.2E-08 54.1 6.0 145 237-402 32-178 (238)
384 PF02897 Peptidase_S9_N: Proly 97.3 0.041 8.9E-07 50.5 19.1 120 224-344 125-262 (414)
385 PF15390 DUF4613: Domain of un 97.3 0.022 4.9E-07 51.9 15.6 121 175-297 58-187 (671)
386 PF10647 Gmad1: Lipoprotein Lp 97.2 0.038 8.2E-07 46.6 15.9 147 224-375 25-186 (253)
387 PF14727 PHTB1_N: PTHB1 N-term 97.2 0.16 3.5E-06 45.8 26.5 148 137-295 36-203 (418)
388 PF10647 Gmad1: Lipoprotein Lp 97.2 0.11 2.4E-06 43.8 21.4 157 62-249 25-192 (253)
389 KOG4441 Proteins containing BT 97.1 0.11 2.4E-06 49.4 19.7 220 137-378 284-535 (571)
390 KOG2079 Vacuolar assembly/sort 97.1 0.022 4.8E-07 55.5 14.7 105 71-202 98-203 (1206)
391 PF07995 GSDH: Glucose / Sorbo 97.1 0.18 3.9E-06 44.5 26.2 71 266-337 253-330 (331)
392 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0031 6.7E-08 36.8 5.7 36 310-346 9-44 (47)
393 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0023 5E-08 37.3 5.1 31 60-90 11-41 (47)
394 KOG2079 Vacuolar assembly/sort 97.0 0.0031 6.7E-08 61.1 8.6 98 276-377 98-198 (1206)
395 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.24 5.1E-06 44.8 28.5 274 71-381 36-357 (418)
396 KOG2280 Vacuolar assembly/sort 97.0 0.046 9.9E-07 51.4 15.2 201 148-366 64-271 (829)
397 PF14870 PSII_BNR: Photosynthe 97.0 0.2 4.3E-06 43.1 29.2 183 177-372 107-293 (302)
398 PHA02713 hypothetical protein; 97.0 0.041 8.9E-07 52.3 15.5 198 137-355 303-546 (557)
399 COG3386 Gluconolactonase [Carb 96.9 0.25 5.4E-06 42.8 23.4 222 66-328 30-271 (307)
400 KOG1916 Nuclear protein, conta 96.9 0.00092 2E-08 63.2 3.5 149 194-347 153-328 (1283)
401 KOG4441 Proteins containing BT 96.8 0.23 5E-06 47.3 18.9 189 137-346 332-550 (571)
402 COG3204 Uncharacterized protei 96.8 0.26 5.7E-06 41.2 20.5 167 120-298 86-265 (316)
403 KOG1897 Damage-specific DNA bi 96.7 0.66 1.4E-05 45.5 29.1 166 224-398 776-956 (1096)
404 TIGR02604 Piru_Ver_Nterm putat 96.7 0.42 9.1E-06 43.0 21.9 148 121-284 15-202 (367)
405 PF10168 Nup88: Nuclear pore c 96.7 0.32 6.9E-06 47.4 19.2 92 59-158 83-181 (717)
406 PF15390 DUF4613: Domain of un 96.7 0.087 1.9E-06 48.3 14.2 127 117-253 54-186 (671)
407 PF14870 PSII_BNR: Photosynthe 96.7 0.35 7.7E-06 41.6 27.8 232 118-375 15-253 (302)
408 COG5167 VID27 Protein involved 96.7 0.047 1E-06 48.9 12.2 142 141-296 483-632 (776)
409 TIGR02604 Piru_Ver_Nterm putat 96.7 0.16 3.4E-06 45.7 16.1 146 224-374 15-203 (367)
410 KOG2444 WD40 repeat protein [G 96.7 0.008 1.7E-07 47.8 6.8 143 140-297 32-178 (238)
411 KOG4499 Ca2+-binding protein R 96.6 0.18 3.9E-06 40.6 13.6 107 177-284 161-273 (310)
412 KOG1916 Nuclear protein, conta 96.6 0.0046 9.9E-08 58.8 5.7 169 245-429 111-298 (1283)
413 PHA02713 hypothetical protein; 96.5 0.43 9.4E-06 45.5 18.7 134 234-376 351-523 (557)
414 KOG3630 Nuclear pore complex, 96.5 0.1 2.2E-06 51.6 13.9 151 175-329 102-260 (1405)
415 PF12234 Rav1p_C: RAVE protein 96.5 0.15 3.2E-06 48.3 14.7 104 235-341 41-155 (631)
416 TIGR03118 PEPCTERM_chp_1 conse 96.3 0.56 1.2E-05 39.6 20.8 208 175-383 24-278 (336)
417 PF05694 SBP56: 56kDa selenium 96.3 0.77 1.7E-05 41.1 23.3 231 137-373 86-392 (461)
418 PF05096 Glu_cyclase_2: Glutam 96.1 0.64 1.4E-05 38.8 20.7 183 176-372 47-249 (264)
419 TIGR03074 PQQ_membr_DH membran 96.1 1.6 3.4E-05 43.2 23.5 213 138-350 194-485 (764)
420 PHA03098 kelch-like protein; P 96.1 0.76 1.6E-05 43.9 18.1 189 137-346 294-515 (534)
421 TIGR03074 PQQ_membr_DH membran 96.1 1.7 3.7E-05 43.0 22.1 148 235-383 260-476 (764)
422 TIGR03118 PEPCTERM_chp_1 conse 96.1 0.77 1.7E-05 38.9 24.8 230 122-364 25-307 (336)
423 KOG2377 Uncharacterized conser 96.0 0.2 4.3E-06 44.5 12.3 108 264-374 65-173 (657)
424 COG5167 VID27 Protein involved 96.0 1.1 2.3E-05 40.8 16.8 138 234-375 478-624 (776)
425 PF10313 DUF2415: Uncharacteri 96.0 0.032 7E-07 31.4 5.0 32 223-254 1-34 (43)
426 PF12657 TFIIIC_delta: Transcr 95.9 0.29 6.3E-06 38.5 12.1 36 121-157 87-122 (173)
427 PRK13684 Ycf48-like protein; P 95.8 1.3 2.8E-05 39.3 29.7 151 222-381 172-328 (334)
428 PF02333 Phytase: Phytase; In 95.8 1.3 2.8E-05 39.3 22.3 210 135-350 65-299 (381)
429 PF12234 Rav1p_C: RAVE protein 95.8 0.41 8.9E-06 45.4 14.2 117 63-203 32-157 (631)
430 PF07995 GSDH: Glucose / Sorbo 95.8 1.3 2.8E-05 39.2 21.8 66 313-378 253-329 (331)
431 PF08728 CRT10: CRT10; InterP 95.6 1.2 2.5E-05 43.0 16.4 154 185-341 49-245 (717)
432 KOG3630 Nuclear pore complex, 95.6 0.24 5.1E-06 49.2 11.9 144 224-373 102-262 (1405)
433 PF08728 CRT10: CRT10; InterP 95.5 1.8 4E-05 41.8 17.5 111 137-252 113-245 (717)
434 PF10313 DUF2415: Uncharacteri 95.3 0.077 1.7E-06 29.9 4.9 31 61-91 1-34 (43)
435 COG4590 ABC-type uncharacteriz 95.3 0.19 4.1E-06 44.6 9.5 166 175-351 222-395 (733)
436 PHA03098 kelch-like protein; P 95.2 2.8 6E-05 40.1 18.3 145 137-298 342-513 (534)
437 PRK10115 protease 2; Provision 95.1 3.7 8E-05 40.5 31.6 241 62-345 128-397 (686)
438 KOG1900 Nuclear pore complex, 95.0 0.54 1.2E-05 47.6 12.7 171 59-254 77-273 (1311)
439 KOG2247 WD40 repeat-containing 95.0 0.011 2.3E-07 52.6 1.2 141 135-293 43-185 (615)
440 KOG2247 WD40 repeat-containing 94.7 0.0061 1.3E-07 54.0 -1.0 144 225-376 37-180 (615)
441 PF10168 Nup88: Nuclear pore c 94.5 1.6 3.4E-05 42.8 14.4 79 222-302 84-185 (717)
442 PHA02790 Kelch-like protein; P 94.2 4.6 0.0001 37.9 16.8 185 137-345 271-473 (480)
443 PF07569 Hira: TUP1-like enhan 94.0 0.6 1.3E-05 38.3 9.2 74 273-348 18-101 (219)
444 PRK10115 protease 2; Provision 93.9 7.2 0.00016 38.5 23.7 112 175-296 128-255 (686)
445 KOG2377 Uncharacterized conser 93.7 2.7 6E-05 37.7 12.9 142 175-328 24-169 (657)
446 PF13449 Phytase-like: Esteras 93.6 4.9 0.00011 35.5 17.3 152 175-328 21-230 (326)
447 PF11635 Med16: Mediator compl 93.5 7.8 0.00017 38.7 17.5 67 313-379 260-345 (753)
448 PF10214 Rrn6: RNA polymerase 93.5 9.1 0.0002 38.4 20.7 162 175-343 81-277 (765)
449 PF07569 Hira: TUP1-like enhan 93.5 0.58 1.2E-05 38.4 8.3 67 137-203 21-96 (219)
450 COG3823 Glutamine cyclotransfe 93.5 3.2 7E-05 33.1 13.1 177 71-284 55-247 (262)
451 PHA02790 Kelch-like protein; P 93.5 6.8 0.00015 36.8 16.8 142 137-298 318-472 (480)
452 PF03022 MRJP: Major royal jel 93.4 4.7 0.0001 34.8 19.1 174 221-407 59-283 (287)
453 PLN00033 photosystem II stabil 93.3 6.2 0.00013 35.8 17.6 148 176-339 241-396 (398)
454 COG4257 Vgb Streptogramin lyas 93.2 4.5 9.7E-05 33.9 20.4 218 135-368 70-289 (353)
455 PF02333 Phytase: Phytase; In 92.9 6.7 0.00014 35.1 18.6 190 183-384 66-290 (381)
456 COG5276 Uncharacterized conser 92.7 5.6 0.00012 33.7 22.0 188 137-343 95-286 (370)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 92.6 2.4 5.1E-05 38.5 11.3 109 52-166 299-408 (415)
458 KOG3616 Selective LIM binding 92.3 2.8 6E-05 40.2 11.6 112 60-201 14-125 (1636)
459 KOG1896 mRNA cleavage and poly 92.3 14 0.00031 37.8 16.7 188 147-342 1003-1213(1366)
460 PRK13684 Ycf48-like protein; P 92.0 8.4 0.00018 34.2 26.6 188 175-379 91-283 (334)
461 PF13449 Phytase-like: Esteras 91.8 8.8 0.00019 33.9 16.1 146 223-372 20-232 (326)
462 PF07676 PD40: WD40-like Beta 91.7 0.93 2E-05 25.0 5.2 30 264-293 7-38 (39)
463 COG3823 Glutamine cyclotransfe 91.6 5.9 0.00013 31.7 11.8 176 184-372 55-247 (262)
464 PF14781 BBS2_N: Ciliary BBSom 91.6 4.3 9.3E-05 29.9 11.9 109 228-346 4-129 (136)
465 PF12657 TFIIIC_delta: Transcr 91.3 3.5 7.5E-05 32.4 10.0 31 266-297 86-122 (173)
466 TIGR02276 beta_rpt_yvtn 40-res 91.2 1.4 3E-05 24.7 5.7 41 232-273 1-41 (42)
467 KOG1900 Nuclear pore complex, 91.0 4.4 9.6E-05 41.5 12.1 154 226-383 82-271 (1311)
468 TIGR02276 beta_rpt_yvtn 40-res 90.7 1.1 2.4E-05 25.1 5.0 40 322-362 1-41 (42)
469 PF14781 BBS2_N: Ciliary BBSom 90.1 6.1 0.00013 29.1 12.9 110 136-260 8-132 (136)
470 KOG1983 Tomosyn and related SN 89.7 28 0.0006 36.1 19.6 29 62-90 37-65 (993)
471 PF11715 Nup160: Nucleoporin N 89.4 3.1 6.7E-05 39.9 9.8 38 313-350 215-256 (547)
472 PF07250 Glyoxal_oxid_N: Glyox 89.0 12 0.00027 31.2 11.6 137 247-383 48-198 (243)
473 smart00036 CNH Domain found in 88.8 15 0.00033 32.0 24.1 58 138-203 13-74 (302)
474 PF12768 Rax2: Cortical protei 88.6 14 0.00031 31.6 12.0 118 245-364 16-146 (281)
475 KOG4460 Nuclear pore complex, 88.6 4 8.6E-05 37.5 8.9 92 62-157 105-199 (741)
476 COG5290 IkappaB kinase complex 88.5 21 0.00045 35.0 13.7 110 268-381 249-364 (1243)
477 PF07676 PD40: WD40-like Beta 87.8 1.9 4.2E-05 23.7 4.5 29 59-87 7-38 (39)
478 PF12768 Rax2: Cortical protei 87.8 17 0.00036 31.2 12.5 118 148-275 16-146 (281)
479 PF14761 HPS3_N: Hermansky-Pud 87.7 13 0.00029 30.0 13.0 144 140-295 30-213 (215)
480 PF03022 MRJP: Major royal jel 87.2 19 0.0004 31.2 17.0 187 83-284 35-254 (287)
481 PF07250 Glyoxal_oxid_N: Glyox 87.0 17 0.00036 30.4 12.0 122 227-352 71-207 (243)
482 PF14761 HPS3_N: Hermansky-Pud 86.9 15 0.00032 29.7 11.0 52 278-333 29-80 (215)
483 TIGR03606 non_repeat_PQQ dehyd 86.6 27 0.00058 32.4 14.5 109 266-375 30-166 (454)
484 KOG2063 Vacuolar assembly/sort 86.3 40 0.00086 34.1 16.1 68 136-204 24-98 (877)
485 PF01731 Arylesterase: Arylest 86.2 5.5 0.00012 26.9 6.6 50 245-297 36-85 (86)
486 PF08801 Nucleoporin_N: Nup133 85.9 26 0.00056 32.4 13.3 29 356-384 191-219 (422)
487 PF08801 Nucleoporin_N: Nup133 85.8 27 0.00058 32.3 13.3 32 312-343 189-220 (422)
488 COG1520 FOG: WD40-like repeat 85.6 27 0.00059 31.5 22.8 200 140-353 70-279 (370)
489 PLN02193 nitrile-specifier pro 85.5 32 0.0007 32.3 20.0 108 234-346 278-414 (470)
490 PLN02153 epithiospecifier prot 84.6 29 0.00062 30.9 20.9 24 138-161 33-63 (341)
491 TIGR03606 non_repeat_PQQ dehyd 84.3 35 0.00076 31.7 28.6 75 324-399 369-450 (454)
492 TIGR03547 muta_rot_YjhT mutatr 83.8 31 0.00068 30.7 21.0 12 245-256 168-179 (346)
493 TIGR03032 conserved hypothetic 83.3 30 0.00064 30.0 22.9 83 276-366 212-316 (335)
494 PF11715 Nup160: Nucleoporin N 83.1 10 0.00022 36.5 9.6 66 234-300 157-252 (547)
495 smart00564 PQQ beta-propeller 82.9 2.9 6.2E-05 21.8 3.5 24 326-349 8-31 (33)
496 TIGR03548 mutarot_permut cycli 82.6 34 0.00073 30.2 20.3 64 234-299 123-197 (323)
497 PLN00033 photosystem II stabil 82.6 39 0.00084 30.9 32.6 142 225-373 241-389 (398)
498 KOG1898 Splicing factor 3b, su 82.3 62 0.0013 33.1 17.2 179 149-342 854-1048(1205)
499 TIGR02171 Fb_sc_TIGR02171 Fibr 81.7 12 0.00026 37.4 9.3 85 237-326 321-412 (912)
500 PF03088 Str_synth: Strictosid 81.3 14 0.00031 25.1 7.1 51 239-290 31-81 (89)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-54 Score=346.97 Aligned_cols=290 Identities=22% Similarity=0.344 Sum_probs=249.5
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
..++...+.||.++|.|++|+|+|+.|+||+.|.++|+||+.+..... ...+|.+.|.+++|
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-----------------t~KgH~~WVlcvaw- 165 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-----------------TCKGHKNWVLCVAW- 165 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce-----------------eecCCccEEEEEEE-
Confidence 345667899999999999999999999999999999999998754333 33456689999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCcee-eeeecccccccccceEEEEECC-----CCcEEE-EEcCCeEEEEEc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-----TGTKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~-~~~d~~i~v~d~ 201 (430)
+|||+.||+|+.||+|++||..+|+.+ ..+..|.. .|++++|.| ..++++ ++.||.++|||+
T Consensus 166 ------sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 166 ------SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred ------CCCcchhhccccCCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 889999999999999999999998754 34555544 999999976 456777 458999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc-------
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS------- 274 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~------- 274 (430)
..+ .......+|..+|+|+.|. +..++++|+.|++|++|+...|.+...+++|...|+.++.+
T Consensus 235 ~~~--------~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 235 KLG--------TCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred cCc--------eEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 762 3334458999999999997 45699999999999999999999999999999999999877
Q ss_pred ----cCCC-------------------------EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC
Q 014125 275 ----RDGN-------------------------YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 275 ----~~~~-------------------------~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
|.++ .|++++ .|.++.+|+-....++.. +..+|...|+.+.||||++
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkpi~---rmtgHq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKPIT---RMTGHQALVNHVSFSPDGR 380 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec-CCceEEEecccccccchh---hhhchhhheeeEEECCCcc
Confidence 2233 488888 999999999876655443 4478999999999999999
Q ss_pred EEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 326 HLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++|+++.|..|++||.++|+.+.+|++|-.+|..++|+.|.++|++|+.|.+++||
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999977666666
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-50 Score=326.90 Aligned_cols=295 Identities=20% Similarity=0.295 Sum_probs=256.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+.++|...|.|++|+|||+.||+|+.||+|++||.++++.. .....+|...|.+++|.|..
T Consensus 149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----------------g~~l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----------------GRALRGHKKWITALAWEPLH 212 (480)
T ss_pred cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----------------cccccCcccceeEEeecccc
Confidence 44688999999999999999999999999999999999887542 23445677899999999875
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
. .|..++||+++.||+|+|||+..+.++..+.+|.. +|+|+.|-.+|-+..++.|++|++|+...+
T Consensus 213 l--~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-----~VTCvrwGG~gliySgS~DrtIkvw~a~dG------- 278 (480)
T KOG0271|consen 213 L--VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-----SVTCVRWGGEGLIYSGSQDRTIKVWRALDG------- 278 (480)
T ss_pred c--CCCccceecccCCCCEEEEEccCceEEEEeccCcc-----ceEEEEEcCCceEEecCCCceEEEEEccch-------
Confidence 5 67788999999999999999999999999998877 999999977764444669999999998762
Q ss_pred ccccCCCCCCCcceEEEEEc-----------C------------------------CCCceEEEecCCCeEEEEEcCCc-
Q 014125 212 STLKGNKEGQAGIMSAIAFS-----------P------------------------THTGMLAIGSYSQTSAIYREDNM- 255 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~-----------~------------------------~~~~~l~~~~~dg~v~~~d~~~~- 255 (430)
.+...+.+|...|+.++.+ | +++..+++|+.|.++.+|+....
T Consensus 279 -~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 279 -KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred -hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 3444557888888888887 1 12336999999999999997654
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL 335 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 335 (430)
+++..+.+|..-|+.+.||||++++++++ .|..|++||.++++.. ..+.+|-..|+.++|+.|.++|++|+.|.+
T Consensus 358 kpi~rmtgHq~lVn~V~fSPd~r~IASaS-FDkSVkLW~g~tGk~l----asfRGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 358 KPITRMTGHQALVNHVSFSPDGRYIASAS-FDKSVKLWDGRTGKFL----ASFRGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred cchhhhhchhhheeeEEECCCccEEEEee-cccceeeeeCCCcchh----hhhhhccceeEEEEeccCccEEEEcCCCce
Confidence 57888899999999999999999999999 9999999999998643 344789999999999999999999999999
Q ss_pred EEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 336 VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
++||++++.++...+.+|.+.|.++.|+|||..+++++.|..+++|.
T Consensus 433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999887777773
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-50 Score=332.01 Aligned_cols=339 Identities=20% Similarity=0.228 Sum_probs=276.8
Q ss_pred hHHHHHHhhhheeccchhhhHHhhhcCceeeccccccCC---CCCcceeeecceeecccCCCceeEEEECcCCceEEEec
Q 014125 3 EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDV---PPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS 79 (430)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~ 79 (430)
..++...+..+..++..+...+...+......|...-.. ................|-+.+|..+.||+|++.|||||
T Consensus 115 p~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~s 194 (459)
T KOG0272|consen 115 PVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGS 194 (459)
T ss_pred CHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEee
Confidence 344445555555555555554444333322222210000 00111222234445667788999999999999999999
Q ss_pred CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc
Q 014125 80 EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL 159 (430)
Q Consensus 80 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 159 (430)
-+|.++||+.++.. ....+.+|...|.++.|+|.. ++..+|+|+.||++++|++.+..
T Consensus 195 wsG~~kvW~~~~~~-----------------~~~~l~gH~~~v~~~~fhP~~-----~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 195 WSGLVKVWSVPQCN-----------------LLQTLRGHTSRVGAAVFHPVD-----SDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCceeEeecCCcc-----------------eeEEEeccccceeeEEEccCC-----CccceeeeccCCceeeeccCCCc
Confidence 99999999988653 234566788999999997742 46789999999999999999998
Q ss_pred eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceE
Q 014125 160 LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 238 (430)
++..+..|.. .|..++|+|+|++|. ++.|.+-++||+++.. ......+|...|.+++|.| ++.++
T Consensus 253 ~l~~l~gH~~-----RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------ElL~QEGHs~~v~~iaf~~-DGSL~ 318 (459)
T KOG0272|consen 253 PLQDLEGHLA-----RVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------ELLLQEGHSKGVFSIAFQP-DGSLA 318 (459)
T ss_pred chhhhhcchh-----hheeeeecCCCceeeecccccchhhcccccch--------hhHhhcccccccceeEecC-CCcee
Confidence 8888888776 899999999999999 5599999999998843 2333579999999999999 66799
Q ss_pred EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEE
Q 014125 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILF 318 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 318 (430)
++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..|++|+ .|++++|||++.... ++...+|.+-|+.+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE----LYTIPAHSNLVSQV 393 (459)
T ss_pred eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc----ceecccccchhhhe
Confidence 9999999999999999999999999999999999999999999999 999999999998754 34447999999999
Q ss_pred EEcC-CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 319 DIEP-SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 319 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.|+| .|.+|++++.|++++||...++.+++++.+|.+.|.++..+|++.++++++.|+++++|.
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999 689999999999999999999999999999999999999999999999999877777774
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-48 Score=303.78 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=254.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..++++||.+.|.++.|++|.++|+++|.||.+.|||.-+......++. ....|...+|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----------------~s~WVMtCA~--- 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----------------PSSWVMTCAY--- 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----------------CceeEEEEEE---
Confidence 45589999999999999999999999999999999999876543322222 2257888888
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCC------ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTG------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
+|.|+.+|.|+-|+...||++.+. ...+.+..|.. .+.++.|-+|+.+|.++.|.+..+||++++
T Consensus 106 ----sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-----ylScC~f~dD~~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 106 ----SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-----YLSCCRFLDDNHILTGSGDMTCALWDIETG 176 (343)
T ss_pred ----CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc-----eeEEEEEcCCCceEecCCCceEEEEEcccc
Confidence 778999999999999999999855 23444555554 899999999888777889999999999884
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.....+.+|.+.|.+++++|.+.+.+++|+.|+..++||++.+..++.|.+|+..|++++|.|+|.-+++++
T Consensus 177 --------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 177 --------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred --------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence 333345799999999999998889999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.|++.++||+|...+.. .+.......+|++++||..|++|++|..|..+.+||.-.++.+..+.+|...|+++..+|
T Consensus 249 -DD~tcRlyDlRaD~~~a--~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 249 -DDATCRLYDLRADQELA--VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred -CCceeEEEeecCCcEEe--eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 99999999999986553 334456677899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCceeeec
Q 014125 365 FLPMAASSSGHRRFPVD 381 (430)
Q Consensus 365 ~~~~l~s~~~d~~~~vw 381 (430)
||..++||++|..++||
T Consensus 326 DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCcEEEecchhHheeec
Confidence 99999999987777777
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-42 Score=269.82 Aligned_cols=291 Identities=18% Similarity=0.272 Sum_probs=240.2
Q ss_pred eeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..++.+|++.|+.++..+. .+.|++++.|.++.+|++...... -+.......+|.+.|..+..
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------~G~~~r~~~GHsH~v~dv~~---- 71 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------YGVPVRRLTGHSHFVSDVVL---- 71 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------cCceeeeeeccceEecceEE----
Confidence 3578999999999999986 568899999999999999765211 12334455668899999988
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+++|++.++++.|+++++||+.+++..+.|.+|.. .|.+++|++|++.|++| .|++|++|++-...
T Consensus 72 ---s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~-----dVlsva~s~dn~qivSGSrDkTiklwnt~g~c----- 138 (315)
T KOG0279|consen 72 ---SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK-----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC----- 138 (315)
T ss_pred ---ccCCceEEeccccceEEEEEecCCcEEEEEEecCC-----ceEEEEecCCCceeecCCCcceeeeeeecccE-----
Confidence 88999999999999999999999999999998876 99999999999999965 99999999986531
Q ss_pred cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
........+...|+|+.|+|.. ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+ .||.
T Consensus 139 --k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~ 215 (315)
T KOG0279|consen 139 --KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGE 215 (315)
T ss_pred --EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCce
Confidence 1111223337899999999964 77999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----c-----cCCeeEE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----A-----ADTVNGF 360 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~-----~~~v~~~ 360 (430)
+.+||++.++.. +. ..+...|.+++|+|+...|+.+. +..|+|||+.++..+..++. . .....++
T Consensus 216 ~~LwdL~~~k~l-ys----l~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 216 AMLWDLNEGKNL-YS----LEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred EEEEEccCCcee-Ee----ccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 999999998653 22 36788999999999866666554 45699999999988776652 1 1235678
Q ss_pred EEcCCCcEEEEeeCCceeeec
Q 014125 361 SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw 381 (430)
+|+++|..|+++-.|+.|++|
T Consensus 290 aws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEE
Confidence 999999999999865444444
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=296.12 Aligned_cols=242 Identities=21% Similarity=0.338 Sum_probs=219.1
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEE-EE
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AG 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~ 191 (430)
.++...+|..+.| +.++..|+||+.+|.+++|...+...++.+.+|.. .+.++.|+|. +..++ ++
T Consensus 171 Q~gd~rPis~~~f-------S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-----~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 171 QVGDTRPISGCSF-------SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-----RVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred hccCCCcceeeEe-------ecCCCeEEEeecCCceeEeecCCcceeEEEecccc-----ceeeEEEccCCCccceeeec
Confidence 4456678888888 78999999999999999999999999999998887 8999999998 45666 56
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.||++++|+++.. .+...+.+|...|..++|+| ++.+|++++.|.+-++||++++..+....+|...|.++
T Consensus 239 ~Dgtvklw~~~~e--------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE--------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred cCCceeeeccCCC--------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 9999999999873 44455689999999999999 78899999999999999999999888889999999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+|.|||..+++|| .|..-+|||++++.+.... .+|...|.+++|+|+|..||||+.|++++|||++..+.++++.
T Consensus 310 af~~DGSL~~tGG-lD~~~RvWDlRtgr~im~L----~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 310 AFQPDGSLAATGG-LDSLGRVWDLRTGRCIMFL----AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred EecCCCceeeccC-ccchhheeecccCcEEEEe----cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence 9999999999999 9999999999999766533 5799999999999999999999999999999999999999999
Q ss_pred cccCCeeEEEEcC-CCcEEEEeeCCceeeecC
Q 014125 352 AAADTVNGFSFHP-FLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 352 ~~~~~v~~~~~~~-~~~~l~s~~~d~~~~vw~ 382 (430)
+|.+-|+.+.|+| .|.+|+|++.|+++++|.
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeec
Confidence 9999999999999 788999999887777773
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.5e-41 Score=263.74 Aligned_cols=292 Identities=18% Similarity=0.310 Sum_probs=244.7
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
......+.+|.+.|+.+.|+|+|.+|||||.|..|.+|++.... ........|.+.|..+.|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc----------------eN~~~lkgHsgAVM~l~~-- 98 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC----------------ENFWVLKGHSGAVMELHG-- 98 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------cceeeeccccceeEeeee--
Confidence 34566889999999999999999999999999999999975321 112233478899999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~ 207 (430)
.+|++.+++++.|.+++.||.++|+.+..++.|.. -+.++.-+.-|..+++ + .|+++++||++.....
T Consensus 99 -----~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 99 -----MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred -----ccCCCEEEEecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 77999999999999999999999999999998876 7777776666777774 3 8999999999864221
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.. ......++++.|.. ....+.+|+-|+.|++||++.......+.+|..+|+.+..+|+|.++++-+ +|
T Consensus 169 ----~t-----~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md 237 (338)
T KOG0265|consen 169 ----KT-----FENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MD 237 (338)
T ss_pred ----hc-----cccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-cc
Confidence 11 22345689999998 666889999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEE--EEeecccCC--ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 288 PYILCWDLRKAVQVV--YKLYRSSEH--TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
.++++||++..-... ..++....| ......++|+|+++.+.+|+.|..+++||......++.+.+|.+.|.++.|+
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 999999998642211 122222222 3345678999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCceeee
Q 014125 364 PFLPMAASSSGHRRFPV 380 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~v 380 (430)
|..++|.+++.|+++.+
T Consensus 318 p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 318 PTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCcEEEEeccCceeEe
Confidence 99999999998887765
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-40 Score=278.70 Aligned_cols=317 Identities=18% Similarity=0.284 Sum_probs=255.7
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
||+.-.++..|...|.|++|+|||.++||++.||+|.+||=.++..+..+.. ...|.+.|++++|
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--------------~~aHkGsIfalsW- 243 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--------------SDAHKGSIFALSW- 243 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------CCCccccEEEEEE-
Confidence 3444457888999999999999999999999999999999888765544332 2357789999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
+||+..|++++.|.+++|||+.+.++++++......+. .-..+.|. .+.++..+.+|.|.+++...+.
T Consensus 244 ------sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d--qqvG~lWq-kd~lItVSl~G~in~ln~~d~~--- 311 (603)
T KOG0318|consen 244 ------SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED--QQVGCLWQ-KDHLITVSLSGTINYLNPSDPS--- 311 (603)
T ss_pred ------CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc--eEEEEEEe-CCeEEEEEcCcEEEEecccCCC---
Confidence 78999999999999999999999999999887654222 33456665 5556668899999999988743
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee-----------EEee---------------
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-----------YVLH--------------- 262 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-----------~~~~--------------- 262 (430)
......+|...|+++..+| ++..|++|+.||.|.-|+..++..- ..+.
T Consensus 312 -----~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 312 -----VLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred -----hhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 3344589999999999999 5589999999999999997654211 0000
Q ss_pred -----------------------------------------------cc--------ccCeEEEEEccCCCEEEEEecCC
Q 014125 263 -----------------------------------------------GQ--------EGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 263 -----------------------------------------------~~--------~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.+ .-...+++++|++..+++|+ .|
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~D 464 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QD 464 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-cc
Confidence 00 01235688999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee-cccccccCCeeEEEEcCCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI-SGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~ 366 (430)
+.|++|.+....... ......|..+|+++++|||+.|||++...+.+.+||+.+.+.. ..+..|...|.+++|+|+.
T Consensus 465 gkvhvysl~g~~l~e--e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKE--EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ceEEEEEecCCcccc--eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 999999998754321 1222579999999999999999999999999999999988763 2345699999999999999
Q ss_pred cEEEEeeCCceeeecC-------------------------CCccccccCCCcEEEEeec
Q 014125 367 PMAASSSGHRRFPVDD-------------------------FEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~-------------------------~~~l~~~~~d~~i~~w~~~ 401 (430)
.++|||+-|..|.||+ ...++++|.|.+|++|++.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999999993 3449999999999999875
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=291.22 Aligned_cols=341 Identities=20% Similarity=0.304 Sum_probs=266.6
Q ss_pred cCCCCCc--ceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeee
Q 014125 39 FDVPPHR--TYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV 116 (430)
Q Consensus 39 ~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (430)
|..|... .+.||.+.+++.||.+.|+++.|+.|.++|++||.|-+++||.++..+ ........
T Consensus 122 w~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k---------------~~~~~~l~ 186 (893)
T KOG0291|consen 122 WHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK---------------NLFTYALN 186 (893)
T ss_pred EecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc---------------ccceEecc
Confidence 4444443 488999999999999999999999999999999999999999998543 22334455
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-----------------------Cce-----ee-eeecc
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----------------------GLL-----RC-TYRAY 167 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~-----~~-~~~~~ 167 (430)
+|...|-+.-| ..+...+++.+.||.+.+|.... ++. .. ..+.+
T Consensus 187 gHkd~VvacfF-------~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 187 GHKDYVVACFF-------GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred CCCcceEEEEe-------ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEee
Confidence 67777777777 55677788899999999987651 000 00 00000
Q ss_pred ccccc------------------------------------------ccceEEEEECCCCcEEEEE--cCCeEEEEEcCC
Q 014125 168 DAVDE------------------------------------------ITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR 203 (430)
Q Consensus 168 ~~~~~------------------------------------------~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~ 203 (430)
--... ..+|..++|+..|.+|+.| .-|.+-||+...
T Consensus 260 ~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 00000 1234455555556666633 334666666654
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
. ......++|...+++++++| ++.++|+|+.||.|++||..++-+..++..|...|+.+.|+..|+.++++
T Consensus 340 E--------sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 340 E--------SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred c--------ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 2 22334578999999999999 67799999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc-EEEEEcCCCCeecccccccCCeeEEEE
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
+ -||+|+.||+......... . ........+++..|.|..+++|+.|.- |+||++.+|+++-.+.+|+++|.+++|
T Consensus 411 S-LDGtVRAwDlkRYrNfRTf--t-~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 411 S-LDGTVRAWDLKRYRNFRTF--T-SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred e-cCCeEEeeeecccceeeee--c-CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 9 9999999999876543222 1 234456678999999999999998864 999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCceeeecC-------------------------CCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 363 HPFLPMAASSSGHRRFPVDD-------------------------FEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~-------------------------~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
+|.+..|+++|+|.+|++|+ ...++++.-||.|.+||...+..+..++|..+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhh
Confidence 99999999999999999993 34488888999999999999888877776543
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=254.53 Aligned_cols=284 Identities=14% Similarity=0.204 Sum_probs=236.9
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
-+|+|+|.|.+||+|...++.+...+.. ..+.|..+.. .|+++.||+++... |++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-----------------~dsqVNrLei-------Tpdk~~LAaa~~qh-vRl 65 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-----------------PDSQVNRLEI-------TPDKKDLAAAGNQH-VRL 65 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-----------------CccceeeEEE-------cCCcchhhhccCCe-eEE
Confidence 4899999999999999988865433332 3367888887 77899999887654 999
Q ss_pred EeccCCc--eeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEE
Q 014125 153 WDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 153 wd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (430)
||+.++. ++..+..+.. .|.++.|..+|+.+++| .||+++|||++... .. ....+..+|+++.
T Consensus 66 yD~~S~np~Pv~t~e~h~k-----NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--------~q-R~~~~~spVn~vv 131 (311)
T KOG0315|consen 66 YDLNSNNPNPVATFEGHTK-----NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--------CQ-RNYQHNSPVNTVV 131 (311)
T ss_pred EEccCCCCCceeEEeccCC-----ceEEEEEeecCeEEEecCCCceEEEEeccCcc--------cc-hhccCCCCcceEE
Confidence 9999875 4667777655 89999999999999965 99999999998732 11 1245568999999
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc--eEEEEee
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV--QVVYKLY 306 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--~~~~~~~ 306 (430)
.+| +...|++|..+|.|++||+.+..+...+.. ...+|.++...|||.+++++. ..|..++|++-+.. ....++.
T Consensus 132 lhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 132 LHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred ecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhh
Confidence 999 788999999999999999998766555443 345899999999999999998 89999999987642 2333445
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
+...|...+..+.+||++++||+++.|.+++||+.++. +....+.+|...+...+|+.+|.+|+|++
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas------------ 277 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS------------ 277 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC------------
Confidence 56789999999999999999999999999999999987 66778899999999999999999999998
Q ss_pred cccccCCCcEEEEeecccccccccCCCCc
Q 014125 386 LHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 386 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.|+.+|+|+++.++.+....||..
T Consensus 278 -----sd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 278 -----SDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred -----CCCceeecccccCceeeecCCccc
Confidence 578899999999998888888876
No 11
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.5e-42 Score=287.99 Aligned_cols=303 Identities=19% Similarity=0.310 Sum_probs=250.6
Q ss_pred CCCCCcceeeecceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecC
Q 014125 40 DVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (430)
+.++.+.+-|-+..+++.||+..|+++.|.| .+.+|++++.|+.|+||++... ........+|
T Consensus 194 nlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------~~~lrtf~gH 257 (503)
T KOG0282|consen 194 NLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------RRCLRTFKGH 257 (503)
T ss_pred ccccceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------cceehhhhcc
Confidence 3345677778889999999999999999999 8999999999999999998752 2233455677
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEEEE-cCCeE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSV 196 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i 196 (430)
..+|.+++| +++|..|++++.|+.+++||+++|+++..+.... .+.++.|+|++ ..+++| .|+.|
T Consensus 258 ~k~Vrd~~~-------s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 258 RKPVRDASF-------NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred hhhhhhhhc-------cccCCeeeeeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcE
Confidence 799999999 7899999999999999999999999999887655 78899999999 444454 99999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~ 275 (430)
+.||++.+ .+......|-+.|..+.|-+ ++..+++.+.|+++++|+.+..-.+..+. .+.....++..+|
T Consensus 325 ~~wDiRs~--------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 325 RQWDIRSG--------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EEEeccch--------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 99999984 34444567788899999999 77899999999999999998876654433 2334677899999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC--ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH--TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
+++++++-+ .|+.|.+|.+....+.. +...+.+| .+.-..+.|||||++|++|+.||.+.+||.++-+++..+++|
T Consensus 396 ~~~~~~aQs-~dN~i~ifs~~~~~r~n-kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 396 NGKWFAAQS-MDNYIAIFSTVPPFRLN-KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred CCCeehhhc-cCceEEEEecccccccC-HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 999999999 99999999976543221 11222344 455677999999999999999999999999999999999999
Q ss_pred cCCeeEEEEcCCCc-EEEEeeCCceeeecC
Q 014125 354 ADTVNGFSFHPFLP-MAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~ 382 (430)
.+++..+.|+|... .+|||+.||.|++|+
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999765 788888777666664
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-40 Score=276.98 Aligned_cols=277 Identities=21% Similarity=0.334 Sum_probs=242.3
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|++++|+.+|.+||+|+.||.++||+..... ......|.++|.++.| +..|.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------~~tl~~HkgPI~slKW-------nk~G~y 290 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------ISTLGQHKGPIFSLKW-------NKKGTY 290 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------hhhhhccCCceEEEEE-------cCCCCE
Confidence 579999999999999999999999999987442 2244457789999999 778999
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
|++++.|+++.+||..++...+.+..+.. +...+.|-.+..+..++.|+.|+|+.+... .+...+.+
T Consensus 291 ilS~~vD~ttilwd~~~g~~~q~f~~~s~-----~~lDVdW~~~~~F~ts~td~~i~V~kv~~~--------~P~~t~~G 357 (524)
T KOG0273|consen 291 ILSGGVDGTTILWDAHTGTVKQQFEFHSA-----PALDVDWQSNDEFATSSTDGCIHVCKVGED--------RPVKTFIG 357 (524)
T ss_pred EEeccCCccEEEEeccCceEEEeeeeccC-----CccceEEecCceEeecCCCceEEEEEecCC--------Ccceeeec
Confidence 99999999999999999999999988875 556789988877777889999999999763 34444578
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC---------EEEEEecCCCeEE
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN---------YLYTGGRKDPYIL 291 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~d~~i~ 291 (430)
|.+.|.++.|+| .+.+|++++.|++++||++........+.+|...|..+.|+|.|. .+++++ .|++|+
T Consensus 358 H~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~ 435 (524)
T KOG0273|consen 358 HHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVK 435 (524)
T ss_pred ccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEE
Confidence 999999999999 778999999999999999999999999999999999999999753 678888 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 371 (430)
+||+..+.+.. ....|..+|.+++|+|+|+|+|+|+.||.|.+|+..+++.++.+.+ .+.|..++|+.+|.+|..
T Consensus 436 lwdv~~gv~i~----~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 436 LWDVESGVPIH----TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGA 510 (524)
T ss_pred EEEccCCceeE----eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEE
Confidence 99999885443 2368999999999999999999999999999999999999998884 457999999999999999
Q ss_pred eeCCceeeecC
Q 014125 372 SSGHRRFPVDD 382 (430)
Q Consensus 372 ~~~d~~~~vw~ 382 (430)
+-.|+.+++-|
T Consensus 511 ~~sd~~vcvld 521 (524)
T KOG0273|consen 511 CASDGSVCVLD 521 (524)
T ss_pred EecCCCceEEE
Confidence 98777666644
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=253.28 Aligned_cols=288 Identities=19% Similarity=0.295 Sum_probs=232.4
Q ss_pred ceeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.++.+.+|.+.|..++|+|- |..|||||.|+.|+||+...+.. -.....+.-.|...|+.++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~ck~vld~~hkrsVRsvAw--- 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WTCKTVLDDGHKRSVRSVAW--- 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EEEEEeccccchheeeeeee---
Confidence 45688999999999999997 88999999999999999874211 01112233457889999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
+|.|++|++++.|.++.||.-..+ +++..+.+|.. +|.+++|+++|.+|+ ++.|+.|.||.+...+.
T Consensus 70 ----sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~deddE- 139 (312)
T KOG0645|consen 70 ----SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE- 139 (312)
T ss_pred ----cCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-
Confidence 778999999999999999997765 45666777665 999999999999999 66999999999985332
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---CceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+ .....+.+|...|..+.|+| ...+|++++.|.+|++|+-. ...++.++.+|...|.+++|+|.|..|++++
T Consensus 140 f----ec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 140 F----ECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred E----EEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 2 33344578889999999999 77799999999999999766 3468899999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC--Ce----e-cccccccCCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG--KW----I-SGFQAAADTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~----~-~~~~~~~~~v 357 (430)
.|++++||.....- ...|...+..+.|. ...|++++.|+.|++|.-... .+ + ..-..|...|
T Consensus 215 -dD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 215 -DDGTVSIWRLYTDL--------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred -CCcceEeeeeccCc--------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 99999999876431 14577889999998 458999999999999987642 11 1 1334688899
Q ss_pred eEEEEcCC-CcEEEEeeCCceeeec
Q 014125 358 NGFSFHPF-LPMAASSSGHRRFPVD 381 (430)
Q Consensus 358 ~~~~~~~~-~~~l~s~~~d~~~~vw 381 (430)
++++|.|. .+.|++++.||.+++|
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEE
Confidence 99999995 5677777755444444
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.6e-41 Score=268.73 Aligned_cols=300 Identities=15% Similarity=0.243 Sum_probs=254.1
Q ss_pred CCCCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC
Q 014125 41 VPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (430)
.+.+....+++..+++.+|.+.|.|+++.|...+|+||+.|++|+|||+.++++...+..+ -.
T Consensus 132 ~~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh-----------------i~ 194 (460)
T KOG0285|consen 132 MPRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH-----------------IE 194 (460)
T ss_pred CCCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-----------------hh
Confidence 3556677788999999999999999999999999999999999999999999876555544 37
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVF 199 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~ 199 (430)
.|..+++ |+-..++++++.|+.|+.||++..+.++.+-+|-. .|.+++.+|.-..|+ +|.|.++++|
T Consensus 195 ~vr~vav-------S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-----~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 195 TVRGVAV-------SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-----GVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred eeeeeee-------cccCceEEEecCCCeeEEEechhhhhHHHhccccc-----eeEEEeccccceeEEecCCcceEEEe
Confidence 8999999 44566999999999999999999999988877665 999999999999998 5599999999
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
|+++.. ....+.+|..+|..+.+.| -...+++|+.|++|++||++.++....+..|...+.+++.+|....
T Consensus 263 DiRtr~--------~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 263 DIRTRA--------SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL 333 (460)
T ss_pred eecccc--------eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh
Confidence 999842 2233579999999999998 4558999999999999999999999999999999999999999988
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-------
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA------- 352 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------- 352 (430)
+++++ -..|+.|++..+.... ...+|...+++++...|| ++++|+++|.+.+||.++|-..+.++.
T Consensus 334 fASas--~dnik~w~~p~g~f~~----nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl 406 (460)
T KOG0285|consen 334 FASAS--PDNIKQWKLPEGEFLQ----NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL 406 (460)
T ss_pred hhccC--CccceeccCCccchhh----ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc
Confidence 88877 4569999998775332 236888999999988775 788999999999999999866554421
Q ss_pred -ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 353 -AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
.+..|.+.+|...|..|++|..|.+|++|..+.
T Consensus 407 ~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 234689999999999999999887777775544
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9e-42 Score=278.76 Aligned_cols=281 Identities=19% Similarity=0.352 Sum_probs=238.7
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
..+|..+.|.|+|+.|++|+..|.+.+|+..... ...+...|..+|+++.| ++++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----------------FEtilQaHDs~Vr~m~w-------s~~g~ 151 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----------------FETILQAHDSPVRTMKW-------SHNGT 151 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-----------------HHHHhhhhcccceeEEE-------ccCCC
Confidence 4579999999999999999999999999874321 12234567789999999 77899
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
.+++|+.+|.|++|+..-.........+.. .|.+++|+|....++ ++.||+|+|||...+. ....+
T Consensus 152 wmiSgD~gG~iKyWqpnmnnVk~~~ahh~e-----aIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--------ee~vL 218 (464)
T KOG0284|consen 152 WMISGDKGGMIKYWQPNMNNVKIIQAHHAE-----AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--------EERVL 218 (464)
T ss_pred EEEEcCCCceEEecccchhhhHHhhHhhhh-----hhheeccCCCCceeEEecCCCeEEEEeccCCc--------hhhee
Confidence 999999999999999866544333333323 899999999877666 6799999999998742 22334
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
.+|.-.|.+++|+| ...++++|+.|..|++||.+++.++.++.+|...|..+.|+|++++|++++ .|..+++||+++.
T Consensus 219 ~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~m 296 (464)
T KOG0284|consen 219 RGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTM 296 (464)
T ss_pred ccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHh
Confidence 78999999999999 777999999999999999999999999999999999999999999999999 9999999999965
Q ss_pred ceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 299 VQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+.+ +...+|...++++.|+|- ..+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.|.
T Consensus 297 kEl----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 297 KEL----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred HHH----HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence 433 445789999999999995 467899999999999999966666555 57999999999999999999999999
Q ss_pred eeeecCC
Q 014125 377 RFPVDDF 383 (430)
Q Consensus 377 ~~~vw~~ 383 (430)
.+++|..
T Consensus 373 t~rfw~r 379 (464)
T KOG0284|consen 373 TVRFWTR 379 (464)
T ss_pred ceeeecc
Confidence 9999943
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.5e-41 Score=293.18 Aligned_cols=340 Identities=18% Similarity=0.265 Sum_probs=271.0
Q ss_pred cceeeccc-CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSI-PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~-h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..+.+.. |++||..++|+|.|..|++|+.||.++|||+..+.. ...+.+|++.|.++.|+|
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~-----------------th~fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC-----------------THSFKGHGGVVSSLLFHP 157 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE-----------------EEEecCCCceEEEEEeCC
Confidence 45567778 999999999999999999999999999999986533 334556779999999988
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
.+....|++|..|+++++||+.+... ...+..|.. .|++++|++|+..++ +|.|..+.+||+..-...
T Consensus 158 -----~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S-----~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 158 -----HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKS-----AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred -----ccchhheeecCCCceEEEEEcccCchHHHHHHhhhh-----heeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 34457899999999999999986654 445555544 889999999886666 568888888887421000
Q ss_pred ------------------------cc------------------------------------------------------
Q 014125 208 ------------------------FE------------------------------------------------------ 209 (430)
Q Consensus 208 ------------------------~~------------------------------------------------------ 209 (430)
+.
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence 00
Q ss_pred ------------------------------------------cc---ccccCCCCCCCcceEEEEEcCCCCceEEEecCC
Q 014125 210 ------------------------------------------KY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244 (430)
Q Consensus 210 ------------------------------------------~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 244 (430)
.+ ...-....+|...|.++.... .+.+|++|+.|
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD 386 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKD 386 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCC
Confidence 00 000012357777888887443 44699999999
Q ss_pred CeEEEEEcCCc----eeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceEE--EE---eecccCCccc
Q 014125 245 QTSAIYREDNM----ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQVV--YK---LYRSSEHTNQ 314 (430)
Q Consensus 245 g~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~--~~---~~~~~~~~~~ 314 (430)
.++++|.++++ -++....+|.+.|.+++++..+. +|++++ .|+++++|++...+... .. ......|...
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 99999988543 24556678999999999987665 566666 99999999998732111 11 1233578999
Q ss_pred eEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC------------
Q 014125 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD------------ 382 (430)
Q Consensus 315 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~------------ 382 (430)
|++++++|+..++||||.|.+.+||+++......++.+|...|.++.|+|..+.++|+|+|++|+||.
T Consensus 466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG 545 (775)
T ss_pred ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred -------------CCccccccCCCcEEEEeecccccccccCCCCcceeee
Q 014125 383 -------------FEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNC 419 (430)
Q Consensus 383 -------------~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 419 (430)
..+|+++|.||-|++|++.+++++.++++|.+-.|.-
T Consensus 546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence 3449999999999999999999999999999877764
No 17
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=4.7e-40 Score=261.11 Aligned_cols=370 Identities=45% Similarity=0.768 Sum_probs=296.7
Q ss_pred cCceeeccccccCCCCCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccccccccc
Q 014125 28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107 (430)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 107 (430)
.++...|| +.+...+.........+.. .........+.|||||..|++-+.|..+++|++............ ..
T Consensus 19 de~~~s~n-~~y~qg~~~l~g~~~~~st-t~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~----~~ 92 (406)
T KOG2919|consen 19 DEKKKSWN-FGYVQGPINLGGNVIAFST-TKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP----LN 92 (406)
T ss_pred cchhccCc-cceeecceeccCceEEecc-CCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc----cc
Confidence 33444454 5554333333332222222 224556788999999999999999999999999754332221111 11
Q ss_pred CcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE
Q 014125 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187 (430)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (430)
......+....+..|+..+|.+......|+.+++++.+.+.-|++||.-+|+....+....+.+......+++|+|||..
T Consensus 93 ~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 93 FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred cccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe
Confidence 12334456677889999999999988899999999999999999999999999999999888887778899999999999
Q ss_pred EEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC
Q 014125 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 188 l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
|++|..+.|++||+..++.......+..+...+..+.+.+++|+|.....+++|+...++-||.-..+.++..+-+|.+.
T Consensus 173 lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 173 LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred EeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 99999999999999888887776666666567778899999999988889999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCe
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKW 346 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~ 346 (430)
|+.++|.++|+.|+++++.|..|.+||+|....++..+.+..+..+.-.-+...|++++|++|+.||.|++||+.+ +..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999999999999999999999999998887777766555566666788899999999999999999999998 777
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC------ccccccCCCcEEEEeeccc
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE------DLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~------~l~~~~~d~~i~~w~~~~~ 403 (430)
+..+..+...++.++++|.-+++++++....+..-+.+ .+-...+.+...+|-.-..
T Consensus 333 ~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~ 395 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPKDDNGELETELEEEADENEKQLWTGYVS 395 (406)
T ss_pred ccccccccccccceecCcccceeeeccCceeecCCCcccccccccccchhhhhhhheeeeecc
Confidence 88899999999999999999999999987777665331 1222234455556644433
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=266.83 Aligned_cols=289 Identities=18% Similarity=0.286 Sum_probs=252.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+.+ |...|.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-----------------Ht~sv~di~~--- 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-----------------HTDSVFDISF--- 158 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-----------------cccceeEEEE---
Confidence 44556789999999999999999999999999999999999876554444 3467999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
+..|+++++++.|-.+++||..+ .++++....+.. .|.+++|-|.|.+|+ ++.|.+|+.|++.++
T Consensus 159 ----~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-----~vS~V~f~P~gd~ilS~srD~tik~We~~tg---- 225 (406)
T KOG0295|consen 159 ----DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-----GVSSVFFLPLGDHILSCSRDNTIKAWECDTG---- 225 (406)
T ss_pred ----ecCccEEEecCCccchhheeHHHHHHHHHHhcCccc-----ceeeEEEEecCCeeeecccccceeEEecccc----
Confidence 77899999999999999999877 445555555555 899999999999999 569999999999884
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC------------
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD------------ 276 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------ 276 (430)
.....+.+|...|..+..+. ++.++++++.|.+|++|-+.++++...+..|+.+|-+++|.|.
T Consensus 226 ----~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 226 ----YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred ----eeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 33344578888999999999 6779999999999999999999999999999999999999874
Q ss_pred ---CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 277 ---GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 277 ---~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
++++.+++ .|++|++||+.++..+. ...+|.+.|..++|+|.|+||+++.+|+++++||++++++...+..|
T Consensus 301 ~~~~~~l~s~S-rDktIk~wdv~tg~cL~----tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 301 TNGGQVLGSGS-RDKTIKIWDVSTGMCLF----TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred CCCccEEEeec-ccceEEEEeccCCeEEE----EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 24777777 99999999999985443 33689999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
..-|+++.|+.+..+++||+.|..+++|.
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999887777774
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=253.01 Aligned_cols=249 Identities=20% Similarity=0.310 Sum_probs=217.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
...+|...|+++.| ++|++++++++.||.+.|||.-+...+..++.... .|..++|+|.+.++++| -
T Consensus 50 ~LkGH~~Ki~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-----WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-----WVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred EecccccceeeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEEecCce-----eEEEEEECCCCCeEEecCc
Confidence 34457789999999 78999999999999999999999888888877765 89999999999999965 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+...||++...... ........+.+|.+.+.++.|-+ .+.|++++.|.+..+||+++++.+..+.+|.+.|.+++
T Consensus 118 dN~Csiy~ls~~d~~--g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAE--GNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred CceeEEEeccccccc--ccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 999999999854221 11234445689999999999987 34899999999999999999999999999999999999
Q ss_pred Ecc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
++| +++.+++++ .|+..++||+|.+.... .+.+|...|+++.|.|+|.-+++|++|++.++||++..+.+..+.
T Consensus 194 l~p~~~ntFvSg~-cD~~aklWD~R~~~c~q----tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 194 LSPSDGNTFVSGG-CDKSAKLWDVRSGQCVQ----TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred cCCCCCCeEEecc-cccceeeeeccCcceeE----eecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 999 899999999 99999999999985442 336899999999999999999999999999999999998888776
Q ss_pred cc--cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 352 AA--ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 352 ~~--~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.. ..+|++++|+..|++|++|..|..+.|||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 32 238999999999999999998888888853
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-39 Score=271.20 Aligned_cols=317 Identities=19% Similarity=0.276 Sum_probs=251.4
Q ss_pred eecccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcc----cccccccccccCcccceeeecCCCeeeeeeec
Q 014125 54 RTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISY----DVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
+++. |..+|.+++|+|-.. .|++|+.|-+.++|++....... .++.+. ............|++++|
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~-------~~~~~s~~~nkdVT~L~W- 243 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI-------REGGKSVPSNKDVTSLDW- 243 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhh-------hhhcccCCccCCcceEEe-
Confidence 4555 999999999999665 99999999999999997511100 000000 000112233468999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
+.+|..||+|+.||.+++|+.. |..+..+..|.. +|.++.|+..|.+|++ +.|+++.+||..++
T Consensus 244 ------n~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD~ttilwd~~~g--- 308 (524)
T KOG0273|consen 244 ------NNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVDGTTILWDAHTG--- 308 (524)
T ss_pred ------cCCCCeEEEeecCcEEEEEecC-chhhhhhhccCC-----ceEEEEEcCCCCEEEeccCCccEEEEeccCc---
Confidence 7799999999999999999974 556666666665 9999999999999995 59999999998763
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.....+.-|..+-..+.|-. ..-+++++.|+.|+++.+....++.++.+|.++|.++.|+|.|..|++++ .|
T Consensus 309 -----~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD 380 (524)
T KOG0273|consen 309 -----TVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DD 380 (524)
T ss_pred -----eEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CC
Confidence 23333455555556778864 44799999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---------CEEEEEccCCcEEEEEcCCCCeecccccccCCee
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---------RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
++++||.+...... .....|...|..+.|+|+| ..+++++.|++|++||+..+.++..|..|..+|.
T Consensus 381 ~TlkiWs~~~~~~~----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSV----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred CeeEeeecCCCcch----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 99999998766432 3346899999999999964 4799999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeeCCceeeecCCCc---cccccCCCcEE--EEeecccccc
Q 014125 359 GFSFHPFLPMAASSSGHRRFPVDDFED---LHLSGDENCVS--VWSFLYASMM 406 (430)
Q Consensus 359 ~~~~~~~~~~l~s~~~d~~~~vw~~~~---l~~~~~d~~i~--~w~~~~~~~~ 406 (430)
+++|+|+|+++|+|+-||.|.+|+... +-+-..++.|. .|+.......
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence 999999999999999999999997654 22333444443 4555554433
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-39 Score=286.72 Aligned_cols=295 Identities=22% Similarity=0.336 Sum_probs=240.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccc-----ccc---------cccccccCcccceeeec
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD-----VNA---------CSLAKDQDSYEASLVVT 117 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~ 117 (430)
+..++..-...++|..|++|++.||.|-.|..|++|.+...++..- +.. ................+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3444555556799999999999999999999999999985332110 000 11112233344455789
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i 196 (430)
|+++|+...| +|+.++|+++++|+++++|.+.+..++-.+++|.. +|+.+.|+|.|.+++ ++.|++-
T Consensus 450 H~GPVyg~sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-----PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 450 HSGPVYGCSF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-----PVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred CCCceeeeee-------cccccceeeccCCcceeeeecccceeEEEecCCCc-----ceeeEEecCCceEEEecCCCcee
Confidence 9999999999 77999999999999999999999999999998876 999999999999999 5599999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
++|.... ......+.+|.+.|.|+.|+| +.+++++|+.|.+|++||..+|..++.|.+|.++|.+++|||+
T Consensus 518 rLWs~d~--------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 518 RLWSTDH--------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred eeeeccc--------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 9999877 233344578999999999999 8889999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-----------
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK----------- 345 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 345 (430)
|++|++++ .||.|.+||+.++... ....+|.+.|.++.|+.+|..||+|+.|++|++||+..-.
T Consensus 589 Gr~LaSg~-ed~~I~iWDl~~~~~v----~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~ 663 (707)
T KOG0263|consen 589 GRYLASGD-EDGLIKIWDLANGSLV----KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTS 663 (707)
T ss_pred CceEeecc-cCCcEEEEEcCCCcch----hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccc
Confidence 99999999 9999999999987543 2235789999999999999999999999999999986422
Q ss_pred -------------eecccccccCCeeEEEEcCCCcEEEEe
Q 014125 346 -------------WISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 346 -------------~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
++..+..-..+|.++.|......|+.|
T Consensus 664 ~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 664 NSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 223333344567777777655444443
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=242.20 Aligned_cols=272 Identities=17% Similarity=0.267 Sum_probs=225.6
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.+.++.....+.|+.+...||+++||+++.- .||+||+.++.. ........|.+.|.++.|
T Consensus 31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np---------------~Pv~t~e~h~kNVtaVgF--- 91 (311)
T KOG0315|consen 31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP---------------NPVATFEGHTKNVTAVGF--- 91 (311)
T ss_pred eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC---------------CceeEEeccCCceEEEEE---
Confidence 4566777778889999999999999998875 799999987642 233345567789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
..+|+.+++|++||+++|||++.-.+.+.++.. .+|+++..+|+...|++| .+|.|++||+......-.
T Consensus 92 ----~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 92 ----QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred ----eecCeEEEecCCCceEEEEeccCcccchhccCC------CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 679999999999999999999986666555544 399999999999888866 899999999987422111
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc------eeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------ELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
........|.++...| ++.+++.+...|+.++|++-.. +++.+++.|.+.+..+.+||++++|+++
T Consensus 162 -------liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 -------LIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred -------cCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 1133346799999999 6679999999999999998654 4667788999999999999999999999
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
+ .|.+++||+.++...... ...+|...++.++||.||+||++|+.|+.+++|++..++.+..+.+|..+..+++..
T Consensus 234 s-sdktv~iwn~~~~~kle~---~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 234 S-SDKTVKIWNTDDFFKLEL---VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred c-CCceEEEEecCCceeeEE---EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9 999999999988732222 236788999999999999999999999999999999999999999998887777654
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.5e-38 Score=271.68 Aligned_cols=286 Identities=26% Similarity=0.378 Sum_probs=241.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.+|.++|++++|+|++++|++++.||.|++|++.++... .....|...+..+.|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~------ 59 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAA------ 59 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEE------
Confidence 456799999999999999999999999999999999865321 122345567888899
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-CCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v~d~~~~~~~~~~~~ 212 (430)
+++++.+++++.+|.|++|++.+++....+..+.. .+.++.|++++.+++++. ++.|.+||++...
T Consensus 60 -~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------- 126 (289)
T cd00200 60 -SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK------- 126 (289)
T ss_pred -CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-------
Confidence 56778999999999999999998877777775554 899999999988888775 9999999997521
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......|...+.++.|+| .+.++++++.++.|++||+++++....+..|...+.+++|+|+++.+++++ .|+.|++
T Consensus 127 -~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i 203 (289)
T cd00200 127 -CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKL 203 (289)
T ss_pred -EEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEE
Confidence 1112236677899999999 467888888899999999999988888888988999999999999999999 7999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||++...... . ...+...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|+++
T Consensus 204 ~d~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 204 WDLSTGKCLG-T---LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EECCCCceec-c---hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 9998754321 2 23567799999999999999998889999999999999999999999999999999999999999
Q ss_pred eCCceeeecC
Q 014125 373 SGHRRFPVDD 382 (430)
Q Consensus 373 ~~d~~~~vw~ 382 (430)
+.|+.+++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9877777774
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-39 Score=263.95 Aligned_cols=300 Identities=19% Similarity=0.237 Sum_probs=230.7
Q ss_pred CcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee
Q 014125 44 HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (430)
.+..-|.+..+++..|++.|.-+.||++|+||||++.|.+..||.+..... -.......+|..+|.
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--------------~kl~~tlvgh~~~V~ 273 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--------------FKLKKTLVGHSQPVS 273 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--------------eeeeeeeecccCceE
Confidence 344455677889999999999999999999999999999999999864321 112334567788999
Q ss_pred eeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 014125 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH 202 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~ 202 (430)
.+.| |||.++|++|+.+..+.+||+.+|.....+.... ...+.+++|.|||..+++| .|+.+..||++
T Consensus 274 yi~w-------SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~----~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 274 YIMW-------SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL----GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred EEEE-------CCCCCeEEecCchHheeeccCCcchhhhhcccCc----CCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999 8899999999999999999999999887776541 2378899999999999866 89999999997
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.... ...+ ......|.+++..+| +..+++.+.|..|++|+..+......+. ...+|++++.|.+++++++
T Consensus 343 gn~~-----~~W~---gvr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 343 GNIL-----GNWE---GVRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV 412 (519)
T ss_pred cchh-----hccc---ccccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE
Confidence 6311 1111 111245899999995 5566666789999999988765554444 4578999999999999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
.- .+..+++||+.....+ .+... ......+..-+|-- +..++++|++|+.|+||+..+++++.++.||...|++++
T Consensus 413 nL-~~qei~LWDl~e~~lv-~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 413 NL-QDQEIHLWDLEENKLV-RKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred Ec-ccCeeEEeecchhhHH-HHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence 88 8999999999965322 22211 22233344445543 347999999999999999999999999999999999999
Q ss_pred EcCCCc-EEEEeeCCceeeec
Q 014125 362 FHPFLP-MAASSSGHRRFPVD 381 (430)
Q Consensus 362 ~~~~~~-~l~s~~~d~~~~vw 381 (430)
|+|..+ ++|+++.||+|+||
T Consensus 490 wNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEe
Confidence 999755 55565544333333
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-38 Score=244.91 Aligned_cols=252 Identities=21% Similarity=0.310 Sum_probs=208.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...+.+.||+..|..+..++||++.++++.|+++++||+.+++ ....+.+|...|.+++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-----------------~t~~f~GH~~dVlsva~--- 113 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-----------------STRRFVGHTKDVLSVAF--- 113 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-----------------EEEEEEecCCceEEEEe---
Confidence 4567899999999999999999999999999999999998753 34567788899999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
++|.+.+++|+.|.+|++|+...+... ++.... +..-|.|+.|+|+ ..+|+ ++.|++|++||++.
T Consensus 114 ----s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~---~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~---- 181 (315)
T KOG0279|consen 114 ----STDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDS---HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN---- 181 (315)
T ss_pred ----cCCCceeecCCCcceeeeeeecccEEE-EEecCC---CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC----
Confidence 789999999999999999998765433 332221 1348999999999 56677 66999999999987
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
..+...+.+|.+.++.++++| ++.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+
T Consensus 182 ----~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~ 253 (315)
T KOG0279|consen 182 ----CQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TA 253 (315)
T ss_pred ----cchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cC
Confidence 556666789999999999999 66799999999999999999999988887 78899999999998766665 47
Q ss_pred CeEEEEeCCCCceEEEEeeccc-----CCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSS-----EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
..|+|||+.+............ .......+++|+++|..|++|-.|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7799999988643322111111 123446789999999999999999999999875
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.4e-37 Score=249.53 Aligned_cols=287 Identities=15% Similarity=0.142 Sum_probs=234.5
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+..|+++|.+++.+|+.++++|||.|..-.+|++.++... .....|...|.++.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~F--- 114 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSF--- 114 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEE---
Confidence 345689999999999999999999999999999999999887533 344557789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
+.+|.+||+|+.+|.|+||+..++.....+..... .+.-+.|+|.+..|++| .||.+.+|.+...
T Consensus 115 ----shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-----dieWl~WHp~a~illAG~~DGsvWmw~ip~~----- 180 (399)
T KOG0296|consen 115 ----SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-----DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----- 180 (399)
T ss_pred ----ccCceEEEecCCCccEEEEEcccCceEEEeecccC-----ceEEEEecccccEEEeecCCCcEEEEECCCc-----
Confidence 88999999999999999999999988887763322 77889999999999876 8999999999763
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------------------------
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------------------------- 263 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------------------- 263 (430)
...+.+.+|..++++=.|.| +++.++++..||+|++|+..++.++..+..
T Consensus 181 ---~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 181 ---ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred ---ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 23334578999999999999 577999999999999999999987766541
Q ss_pred -------------------------cccCeEEEEEcc---CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 264 -------------------------QEGGVTHVQFSR---DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 264 -------------------------~~~~i~~~~~~~---~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
+...+.++.+.| .=.+.++++ .||+|.|||+...... ..-.|...|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~a~~~~R-----~~c~he~~V 330 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDLAASTLR-----HICEHEDGV 330 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEecccchhh-----eeccCCCce
Confidence 011111222222 223455666 9999999999875321 224678889
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|...|.+++.+|+.++++|+|.|+..+|+.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999998 78999999999999999999999999999999999999999999999999766555543
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-37 Score=279.41 Aligned_cols=289 Identities=26% Similarity=0.376 Sum_probs=240.2
Q ss_pred ceeecccC-CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h-~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
....+.+| ...|.++.|+|+|++|++++.|+.+++|++..... ........|...|.+++|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~f--- 211 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAF--- 211 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEE---
Confidence 34555555 78999999999999999999999999999965431 011111457789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEec-cCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++.++++++.|++|++||+ ..+..++.+..|.. .|++++|+|+++++++ +.|++|++||++.
T Consensus 212 ----s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----- 277 (456)
T KOG0266|consen 212 ----SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----- 277 (456)
T ss_pred ----CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccC-----
Confidence 779999999999999999999 55588888888776 9999999999988885 4999999999987
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccC--eEEEEEccCCCEEEEEe
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGG--VTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~ 284 (430)
......+.+|...|++++|++ ++++|++++.|+.|++||+.++. +...+..+... +++++|+|++.++++++
T Consensus 278 ---~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 278 ---GECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ---CeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 234445588999999999999 67799999999999999999998 56677766655 99999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCcc---ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEE
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTN---QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGF 360 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~ 360 (430)
.|+.+++||++........ .+|.. .+.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+
T Consensus 354 -~d~~~~~w~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 354 -LDRTLKLWDLRSGKSVGTY----TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL 428 (456)
T ss_pred -CCCeEEEEEccCCcceeee----cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence 9999999999987544322 23333 4445566788999999999999999999999999999999 8899999
Q ss_pred EEcCCCcEEEEeeC--Cceeeec
Q 014125 361 SFHPFLPMAASSSG--HRRFPVD 381 (430)
Q Consensus 361 ~~~~~~~~l~s~~~--d~~~~vw 381 (430)
.|+|..+++++++. |+.+++|
T Consensus 429 ~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 429 SSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ccCCCcCeeeecCcCCCceEEEe
Confidence 99999999999983 4444444
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-37 Score=234.09 Aligned_cols=279 Identities=22% Similarity=0.330 Sum_probs=233.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+.+..|.++|.++.|+-||+|.++|+.|.+|++|+...+.+. ....+|+..|.+++-
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~--- 67 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAAL--- 67 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccc---
Confidence 445688999999999999999999999999999999998765443 234457788988887
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
+.|+..|++|+.|..+.+||+.+|+..+.+..|.. .|+.+.|+.+...+++| .|.++++||.+.....
T Consensus 68 ----s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-- 136 (307)
T KOG0316|consen 68 ----SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-- 136 (307)
T ss_pred ----cccccccccCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEcccCCCC--
Confidence 67889999999999999999999999999999887 99999999999999855 8999999999874331
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
+.+.+......|.++... ...+++|+.||+++.||++.++.....-+ .+|++++|+++++..++++ .|++
T Consensus 137 ----PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~st 206 (307)
T KOG0316|consen 137 ----PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDST 206 (307)
T ss_pred ----ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccce
Confidence 222234445678899885 45899999999999999999987766554 5799999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC-eeEEEEcCCC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT-VNGFSFHPFL 366 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~ 366 (430)
+++.|-.+++.. .. ..+|.+ .-..++++....++++|++||.|++||+.....+..+..+... |.++.++|.-
T Consensus 207 lrLlDk~tGklL-~s---YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 207 LRLLDKETGKLL-KS---YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred eeecccchhHHH-HH---hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 999999887532 12 134443 3445677777889999999999999999999999999988877 8999999998
Q ss_pred cEEEEeeC
Q 014125 367 PMAASSSG 374 (430)
Q Consensus 367 ~~l~s~~~ 374 (430)
..++++..
T Consensus 283 ~~f~~A~~ 290 (307)
T KOG0316|consen 283 DDFITATG 290 (307)
T ss_pred cceeEecC
Confidence 88888764
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.6e-36 Score=294.09 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=226.8
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
+..|.+.|++++|+|+|++||+|+.|+.|+||++........ ..........+...+.+++|.|.
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~----- 543 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----------DIHYPVVELASRSKLSGICWNSY----- 543 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----------ccccceEEecccCceeeEEeccC-----
Confidence 456999999999999999999999999999999864211000 00011122334467899999542
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++.+|++++.||+|++||+.+++.+..+..|.. .|++++|+| ++.+|++ +.|+.|++||++.... . ..
T Consensus 544 -~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~---~~ 613 (793)
T PLN00181 544 -IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-I---GT 613 (793)
T ss_pred -CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-E---EE
Confidence 467899999999999999999988888877665 899999997 6777774 5899999999976421 1 11
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
+ .. ...+.++.|++.++.+|++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.+|++++ .|+.|++
T Consensus 614 ~----~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~iki 686 (793)
T PLN00181 614 I----KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKL 686 (793)
T ss_pred E----ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEE
Confidence 1 11 24689999977678899999999999999998765 566778899999999997 678899999 9999999
Q ss_pred EeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-------------ccccCCe
Q 014125 293 WDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-------------QAAADTV 357 (430)
Q Consensus 293 ~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------~~~~~~v 357 (430)
||++..... ...+....+|...+..++|+|++.+|++|+.|+.|++|+.....++..+ ..|...|
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 999753210 0112233578888999999999999999999999999998765443221 2345579
Q ss_pred eEEEEcCCCcEEEEeeCCceeeecC
Q 014125 358 NGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+++|+|++.+|++|+.||.|+||+
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999998765555554
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-36 Score=262.65 Aligned_cols=335 Identities=18% Similarity=0.288 Sum_probs=269.1
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
..+|.||.|||+|+++|.|... .+.||..+..... .+.. -.......+|-..|.++.| +.|.+
T Consensus 96 k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~-~~~p--------Fvl~r~~~g~fddi~si~W-------s~DSr 158 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKN-EFNP--------FVLHRTYLGHFDDITSIDW-------SDDSR 158 (893)
T ss_pred cCccceEEECCCCcEEEEEecc-eeEEEecCcchhc-ccCc--------ceEeeeecCCccceeEEEe-------ccCCc
Confidence 5689999999999999987764 8999998754221 1111 1122345567789999999 88999
Q ss_pred eEEEEeCCCcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc-------
Q 014125 140 VFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE------- 209 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~------- 209 (430)
+|++|++|-++++|.+...+.. ..+..|. ..|.+.-|..+...++ .+.||.+.+|..........
T Consensus 159 ~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk-----d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e 233 (893)
T KOG0291|consen 159 LLVTGSRDLSARLFGVDGNKNLFTYALNGHK-----DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEE 233 (893)
T ss_pred eEEeccccceEEEEEeccccccceEeccCCC-----cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccc
Confidence 9999999999999999876653 3333333 4888999998887777 78999999998873211000
Q ss_pred ------------------ccccc-cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 210 ------------------KYSTL-KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 210 ------------------~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
..... +..+......+++.+|++ +.++|++|-.+|...+|.+....+++.+.-...+|..
T Consensus 234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t 312 (893)
T KOG0291|consen 234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT 312 (893)
T ss_pred ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence 00001 111122336799999999 8999999999999999999999999999877789999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
++|+..|.+|+.+++.=|.+-+|+.+...-.. ...+|...+++++++|||+++|+|++||.|+|||..++-++.+|
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl----KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL----KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceee----eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 99999999999999677899999998764333 33689999999999999999999999999999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------ccccc-CC-CcEEEEeeccc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSG-DE-NCVSVWSFLYA 403 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~-~d-~~i~~w~~~~~ 403 (430)
..|.+.|+.+.|+..++.+++++-||+|+.||... ++.+| .| =.|.+|++.++
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 99999999999999999999999999999997643 33333 33 36999999999
Q ss_pred ccccccCCCCcceeeeecc
Q 014125 404 SMMENADGINGCEFNCQSE 422 (430)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~ 422 (430)
+++..+.||.+ ++.+++.
T Consensus 469 qllDiLsGHEg-PVs~l~f 486 (893)
T KOG0291|consen 469 QLLDILSGHEG-PVSGLSF 486 (893)
T ss_pred eeeehhcCCCC-cceeeEE
Confidence 99999999999 6565443
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-37 Score=262.80 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=263.7
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|++.|.++.|+|...+++++-..|.|.||+.++..++..+..+. .+|++..|.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~-----------------~PvRa~kfi------ 64 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE-----------------VPVRAAKFI------ 64 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc-----------------cchhhheee------
Confidence 455689999999999999999999999999999999876655544433 578888884
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+..+.+++|+.|..|+||+..+++.+..+..|.. -|.+++.+|...+++++ .|-.|++||.+.. -.
T Consensus 65 -aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~-------wa 131 (794)
T KOG0276|consen 65 -ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-------WA 131 (794)
T ss_pred -eccceEEEecCCceEEEEecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCc-------ee
Confidence 3577999999999999999999999999999887 89999999999999955 8899999999763 34
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC--CEEEEEecCCCeEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG--NYLYTGGRKDPYIL 291 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~d~~i~ 291 (430)
..+.+.+|...|.+++|+|.+.+.+++++-|++|++|.+.+..+..++++|...|+++.|-+.| .+|++++ .|..|+
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiK 210 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIK 210 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEE
Confidence 4556689999999999999999999999999999999999999999999999999999998754 6999999 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 371 (430)
+||..+..+. ....+|...|..+.|+|.-.++++|++||+++||+..+.++..++....+.|++++-.+.+..++.
T Consensus 211 vWDyQtk~CV----~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v 286 (794)
T KOG0276|consen 211 VWDYQTKSCV----QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV 286 (794)
T ss_pred EeecchHHHH----HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE
Confidence 9999987544 333789999999999999999999999999999999999999999888889999999999999999
Q ss_pred eeCCceeeecCCCccccccCCCc-EEEEeecccc
Q 014125 372 SSGHRRFPVDDFEDLHLSGDENC-VSVWSFLYAS 404 (430)
Q Consensus 372 ~~~d~~~~vw~~~~l~~~~~d~~-i~~w~~~~~~ 404 (430)
|...|.+.|--...-.+.+-|.. =-+|.....-
T Consensus 287 G~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 287 GFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred eccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999887763333222222322 2467655433
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-37 Score=272.10 Aligned_cols=247 Identities=21% Similarity=0.344 Sum_probs=210.7
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCce--------eeee------------------eccccccc
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL--------RCTY------------------RAYDAVDE 172 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~------------------~~~~~~~~ 172 (430)
...+.|..| ++++.+||.|..|..|++|.+...+. +... ....-.+|
T Consensus 378 ~~~v~ca~f-------SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 378 YQGVTCAEF-------SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred CCcceeEee-------cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 345667766 88999999999999999999874221 0000 00011245
Q ss_pred ccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 173 ITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 173 ~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
.++|....|+|+.++|+ ++.|+++|+|.+.+. ...-...+|..+|..+.|+| .+.+||+++.|++-++|.
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWS 521 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccc--------eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeee
Confidence 66999999999999999 558999999999873 22223469999999999999 788999999999999999
Q ss_pred cCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.....+++.+.+|-+.|.|+.|+|+..|+++|+ .|.+||+||+.++..+. . + .+|..+|.+++|||+|++|++|+
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~G~~VR-i-F--~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS-SDRTVRLWDVSTGNSVR-I-F--TGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCC-CCceEEEEEcCCCcEEE-E-e--cCCCCceEEEEEcCCCceEeecc
Confidence 999999999999999999999999999999998 99999999999986542 2 2 68999999999999999999999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCcc
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDL 386 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l 386 (430)
.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+++.|..|++||....
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999998777777765543
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-36 Score=263.97 Aligned_cols=335 Identities=16% Similarity=0.266 Sum_probs=256.8
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.-++.||...|+++.|...|..||+||.|+.|.+||+-...-.. ...+|...|+..-|
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~-----------------rL~GHkd~iT~~~F----- 157 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF-----------------RLRGHKDSITQALF----- 157 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE-----------------EeecchHHHhHHhc-----
Confidence 34788999999999999999999999999999999996442222 23345567777777
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc-----
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD----- 207 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~----- 207 (430)
..+.+.+++.+.|+.|++||+++..+..+.-.+.. .++++++.+ ...++++.|+.+++|++..+...
T Consensus 158 --~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~-----Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~ 229 (888)
T KOG0306|consen 158 --LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRG-----EIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNR 229 (888)
T ss_pred --cCCCeEEEEeccCceEEEEecccceeeeEEecccc-----eEEEEEEec-ceEEEEecCCceEEEEeecccccccccc
Confidence 44678999999999999999999988887766655 999999987 34445679999999998211000
Q ss_pred ------------------cc------------------------------------------------------------
Q 014125 208 ------------------FE------------------------------------------------------------ 209 (430)
Q Consensus 208 ------------------~~------------------------------------------------------------ 209 (430)
..
T Consensus 230 ~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~ 309 (888)
T KOG0306|consen 230 YISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSD 309 (888)
T ss_pred cceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHH
Confidence 00
Q ss_pred -------------------------c---------------ccc--c---------cCCCCCCCcceEEEEEcCCCCceE
Q 014125 210 -------------------------K---------------YST--L---------KGNKEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 210 -------------------------~---------------~~~--~---------~~~~~~~~~~v~~~~~~~~~~~~l 238 (430)
. ... . .....+|...|++++++. +. .+
T Consensus 310 ~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~-~~ 387 (888)
T KOG0306|consen 310 EIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DS-IL 387 (888)
T ss_pred HHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-Cc-ee
Confidence 0 000 0 012346777788888876 33 33
Q ss_pred EEecCCCeEEEEEcCCceeeE----------------------------------------EeeccccCeEEEEEccCCC
Q 014125 239 AIGSYSQTSAIYREDNMELLY----------------------------------------VLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~----------------------------------------~~~~~~~~i~~~~~~~~~~ 278 (430)
+..+..+.+++|+..+.++++ .+++|.+.|.+++.+||++
T Consensus 388 ~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 388 LASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred eeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 333345667777766554443 3356899999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCce------EEEEe--ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQ------VVYKL--YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~------~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.+++++ .|.+|++||..-... ....+ .+...-...|.++.+||||++|+++--|++|+||-+++-+..-.+
T Consensus 468 g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 468 GFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred ceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence 999999 999999999742111 10111 111234678999999999999999999999999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEeeccccc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~~~~~~~ 405 (430)
.||.-||.++..+||+++++|||.|..|+||..+. +.++|.|+.|+.||-..-+.
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh
Confidence 99999999999999999999999999999995432 78999999999999999999
Q ss_pred ccccCCCCcceeeeec
Q 014125 406 MENADGINGCEFNCQS 421 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~~ 421 (430)
+..+.+|.. ++-|..
T Consensus 627 iq~L~~H~~-ev~cLa 641 (888)
T KOG0306|consen 627 IQKLDGHHS-EVWCLA 641 (888)
T ss_pred heeeccchh-eeeeeE
Confidence 999999988 444443
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.5e-38 Score=255.58 Aligned_cols=256 Identities=19% Similarity=0.291 Sum_probs=223.3
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
.+|..++| .|+|+.|++|+..|.+.+|+..+-.....++.|.. +|.++.|++++.++++| .+|.|++
T Consensus 97 c~V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-----~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 97 CPVNVVRW-------TPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-----PVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cceeeEEE-------cCCCceeEeecccccEEEecCceeeHHHHhhhhcc-----cceeEEEccCCCEEEEcCCCceEEe
Confidence 58999999 77999999999999999999855444444555554 99999999999999977 8899999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
|+.... ..+.....|...|++++|+| ....|++++.||+|+|||....+....+.+|.-.|.+++|+|...
T Consensus 165 Wqpnmn--------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 165 WQPNMN--------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG 235 (464)
T ss_pred cccchh--------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc
Confidence 998652 22223345558899999999 667999999999999999999988888999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCee
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
.|++++ .|..|++||.+++.++. ....|...|..+.|+|++++|+++|.|..++++|+++.+.+..+++|...|+
T Consensus 236 Liasgs-kDnlVKlWDprSg~cl~----tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 236 LIASGS-KDNLVKLWDPRSGSCLA----TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred eeEEcc-CCceeEeecCCCcchhh----hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 999999 99999999999986553 3368999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCc-EEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEeec
Q 014125 359 GFSFHPFLP-MAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 359 ~~~~~~~~~-~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~~~ 401 (430)
++.|+|-.. +|.+++.||.|..|.... |++++.|.++++|.-.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999554 888999999999984331 8899999999999664
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=249.62 Aligned_cols=279 Identities=18% Similarity=0.321 Sum_probs=228.2
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.....|+|+.+. ...+++|..|.+|+|||..+.... ....+|.+.|.|+.| +
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~-----------------~~L~GHtGSVLCLqy---------d 246 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL-----------------KILTGHTGSVLCLQY---------D 246 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHH-----------------HhhhcCCCcEEeeec---------c
Confidence 356779999985 468999999999999998865433 245567799999999 6
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.+.+++|+.|.+|++||+++++++.++-.|.. .|..+.|+ +|-.+.++.|.++.+||+..+.. ..+...
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHce-----aVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~-----it~rrV 315 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-----AVLHLRFS-NGYMVTCSKDRSIAVWDMASPTD-----ITLRRV 315 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcc-----eeEEEEEe-CCEEEEecCCceeEEEeccCchH-----HHHHHH
Confidence 77999999999999999999999988877765 89999996 44444477999999999987542 334445
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
+.+|...|..+.|+. +++++++.|.+|++|++.+++.++++.+|...|.|+.+ .++++++|+ .|.+|++||+..
T Consensus 316 LvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS-SDntIRlwdi~~ 389 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIEC 389 (499)
T ss_pred Hhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC-CCceEEEEeccc
Confidence 578999999999954 49999999999999999999999999999999999998 678888888 999999999998
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC---------eecccccccCCeeEEEEcCCCcE
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK---------WISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
+... ....+|..-|.++.|. .+.+++|+.||.|+|||+..+. ++..+..|.+.|..+.|..
T Consensus 390 G~cL----RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---- 459 (499)
T KOG0281|consen 390 GACL----RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---- 459 (499)
T ss_pred cHHH----HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc----
Confidence 8543 2236899999999996 5789999999999999998754 3455667888999999842
Q ss_pred EEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 369 AASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 369 l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
-+++++++|.+|-+|||..+..-
T Consensus 460 ---------------fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 460 ---------------FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ---------------eEEEeccCCCeEEEEEcCCCCcc
Confidence 33444557888999988755443
No 36
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=228.39 Aligned_cols=297 Identities=17% Similarity=0.327 Sum_probs=241.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+.. ......+|+..|-.++|.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~--- 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPK--- 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCC---
Confidence 577899999999999999999999999999999999865322 12233457778999999875
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
...+|++++.|.+|++||...+++........ .=.-+.|+|+|.+++++ .|..|.+.|.++...
T Consensus 76 ---~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~------ 140 (313)
T KOG1407|consen 76 ---HPDLFATASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKI------ 140 (313)
T ss_pred ---CCcceEEecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccce------
Confidence 44589999999999999999999988776544 22368899999999966 899999999876321
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.. .......+..++|+- .+.+++.....|.|.|.....-+++..+++|.....||.|+|+|+++++|+ .|-.+.+
T Consensus 141 --~~-~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSL 215 (313)
T KOG1407|consen 141 --VN-EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSL 215 (313)
T ss_pred --ee-hhcccceeeeeeecC-CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeec
Confidence 11 112234577888885 666777777789999999999999999999999999999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||+...-... ....+.-+|..++|+.+|++||+|++|..|-|-++.+|..+..++ +.++...++|+|...+||-+
T Consensus 216 WD~~ELiC~R----~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 216 WDVDELICER----CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred cChhHhhhhe----eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEE
Confidence 9998753331 224577889999999999999999999999999999999999988 78899999999999999999
Q ss_pred eCCceeeecCCCccccccCCCcEEEEeec
Q 014125 373 SGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 373 ~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
+.|..= -+.-+-|.++++-+.
T Consensus 291 ~ddk~~--------d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 291 CDDKDG--------DSNREAGTVKIFGLS 311 (313)
T ss_pred ecCCCC--------ccccccceeEEecCC
Confidence 876421 111234677776543
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.9e-36 Score=242.31 Aligned_cols=296 Identities=19% Similarity=0.282 Sum_probs=236.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|.+.|.++... +++++||++||.++|||... .......+|.++|.+++|... ++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G------------------k~~~~~~Ght~~ik~v~~v~~----n~ 157 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG------------------KSIKTIVGHTGPIKSVAWVIK----NS 157 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCC------------------ceEEEEecCCcceeeeEEEec----CC
Confidence 3689999999988 68999999999999999873 345567788899999999654 44
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC-ccc-----
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR-DFE----- 209 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~-~~~----- 209 (430)
....|++++.|.++++|.++.+......... ..+|...|-++...+++..+++ +.|.+|.+|+...... ..+
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchh
Confidence 4558999999999999999877543221111 1134458999999999999985 5999999999332111 111
Q ss_pred -----------ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 210 -----------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 210 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
....+...+.+|..+|.++.|++ ...+.+++.|.+|+.||+.++.....+. -...++++..+|..+
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc
Confidence 11122334578999999999997 4589999999999999999999887777 356899999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCCC-eecccccccCC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTGK-WISGFQAAADT 356 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~ 356 (430)
+|++++ .|..+++||.+++...+ ......+|.+.|.++.|+|... .|++|+.||++++||+++.+ +++.+.+|.+.
T Consensus 314 Ll~~gs-sdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 314 LLASGS-SDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred eeeecC-CCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 999999 99999999999875433 3344578999999999999765 58899999999999999887 99999999999
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|.++.|. ++.++++|+.|..++|+..
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEecc
Confidence 9999998 4678888887777776543
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-34 Score=244.51 Aligned_cols=312 Identities=17% Similarity=0.165 Sum_probs=251.6
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..|...++-..|||.|.|+|+|...|.|||||...... ........-.++|.+++|
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---------------iLKnef~v~aG~I~Di~W----- 111 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---------------ILKNEFQVLAGPIKDISW----- 111 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---------------eeeeeeeeccccccccee-----
Confidence 457899999999999999999999999999999999875321 111222233479999999
Q ss_pred ccCCCCceEEEEeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE-EE-EEcCCeEEEEEcCCCCCcc
Q 014125 133 ASDPTSCVFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
+.+++++++.++. +..+++-.++|..+..+.+|.. .|.++.|-|...+ ++ ++.|+.|.+|+= +++
T Consensus 112 --d~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr-----~ins~~~KpsRPfRi~T~sdDn~v~ffeG----PPF 180 (603)
T KOG0318|consen 112 --DFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR-----RINSVDFKPSRPFRIATGSDDNTVAFFEG----PPF 180 (603)
T ss_pred --CCCCcEEEEEecCccceeEEEEecCCCccceeeccce-----eEeeeeccCCCceEEEeccCCCeEEEeeC----CCe
Confidence 7788888877553 3344444447777788887776 8999999998754 44 558999999973 333
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee---ccccCeEEEEEccCCCEEEEEec
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
.+......|...|.++.|+| ++.++++.+.||+|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++
T Consensus 181 ----KFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S- 254 (603)
T KOG0318|consen 181 ----KFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS- 254 (603)
T ss_pred ----eeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-
Confidence 34455578888999999999 57799999999999999999999999988 8999999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.|.+++|||+.+..... .+.....-......+.|. +..|++.+.+|.|.+++.....++..+.+|...|+++..+|+
T Consensus 255 aDkt~KIWdVs~~slv~-t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVS-TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred CCceEEEEEeeccceEE-EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 99999999999884433 322212223445556675 568999999999999999999999999999999999999999
Q ss_pred CcEEEEeeCCceeeecCC-------------------------CccccccCCCcEEEEeecccc
Q 014125 366 LPMAASSSGHRRFPVDDF-------------------------EDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~-------------------------~~l~~~~~d~~i~~w~~~~~~ 404 (430)
+.+|.+|+.||.|.-|+. ..++++|.|.++++-++..+.
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 999999999999999943 237888899999999775433
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.5e-36 Score=239.78 Aligned_cols=261 Identities=18% Similarity=0.298 Sum_probs=231.1
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
.+...|-+.|.++++ .|.+..|++|+.|++|+|||+.+|+...++.++.. .|..+++++...+++ ++
T Consensus 145 rVi~gHlgWVr~vav-------dP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAV-------DPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred hhhhhccceEEEEee-------CCCceeEEecCCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEec
Confidence 455678899999999 66788999999999999999999999999887665 899999999999999 56
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.|+.|+.||+.. ..+.....+|-..|.+++.+| .-..|++|+.|.++++||+++...+..+.+|..+|.++
T Consensus 213 edk~VKCwDLe~--------nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 213 EDKQVKCWDLEY--------NKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred CCCeeEEEechh--------hhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 999999999987 345556689999999999999 66799999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
.+.|-...+++++ .|++|++||++.++..... ..|...+.+++.+|....+|+++.|+ |+-|++..|..+..+.
T Consensus 284 ~~~~~dpqvit~S-~D~tvrlWDl~agkt~~tl----t~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls 357 (460)
T KOG0285|consen 284 MCQPTDPQVITGS-HDSTVRLWDLRAGKTMITL----THHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS 357 (460)
T ss_pred EeecCCCceEEec-CCceEEEeeeccCceeEee----ecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc
Confidence 9999888999999 9999999999998655433 46888899999999999999999885 9999999999999999
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------------------cccccCCCcEEEE
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------------------LHLSGDENCVSVW 398 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------------------l~~~~~d~~i~~w 398 (430)
+|..-|+.++...| .++++|+.+|.+.+||-.. |+++..|.+|++|
T Consensus 358 gh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 358 GHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred cccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 99999999998765 4788899999999995432 7888899999999
Q ss_pred eec
Q 014125 399 SFL 401 (430)
Q Consensus 399 ~~~ 401 (430)
.-.
T Consensus 437 keD 439 (460)
T KOG0285|consen 437 KED 439 (460)
T ss_pred ecc
Confidence 543
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=259.68 Aligned_cols=299 Identities=20% Similarity=0.308 Sum_probs=246.2
Q ss_pred ceeecccCCCceeEEEE-CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKW-SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~-sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
..+.+.|..+.|.+++| .|+.++||.++..+.+|+|++.+.. ..+..+|...|.++.-
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~------------------c~ii~GH~e~vlSL~~--- 373 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY------------------CQIIPGHTEAVLSLDV--- 373 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc------------------eEEEeCchhheeeeee---
Confidence 34567788999999998 5678899999999999999887542 2366778889999983
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCCcc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
..+|-+|++|+.|.++++|.++.+..... .......|...|.+++++..+. +++ ++.|.++++|++.......
T Consensus 374 ----~~~g~llat~sKD~svilWr~~~~~~~~~-~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 374 ----WSSGDLLATGSKDKSVILWRLNNNCSKSL-CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred ----cccCcEEEEecCCceEEEEEecCCcchhh-hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 23567999999999999998854432211 1112223444888999977664 455 5699999999998732211
Q ss_pred c-ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 209 E-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 209 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. ...........|...|++++++| +..++|+|+.|.+.++|++........+.+|...|.++.|+|..+.+++++ .|
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD 526 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GD 526 (775)
T ss_pred ccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CC
Confidence 1 11112223457888999999999 778999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
++|+||.+.+.... .+..+|...|..+.|-.+|..|++++.||.|++|++.+++++.++.+|.+.|++++-+|...
T Consensus 527 ~TvKIW~is~fSCl----kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 527 KTVKIWSISTFSCL----KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred ceEEEEEeccceee----eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 99999999987543 23378999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCceeeecC
Q 014125 368 MAASSSGHRRFPVDD 382 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~ 382 (430)
+++||+.||.+.+|.
T Consensus 603 ~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWK 617 (775)
T ss_pred eeEecCCCeEEEEee
Confidence 999999999999993
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=240.37 Aligned_cols=294 Identities=16% Similarity=0.255 Sum_probs=246.1
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
-.+....+-|..|||||+||++|+.||.|.+|+..++++..+++.. ....+..+..+|.|++| +
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ---------Aqd~fMMmd~aVlci~F-------S 272 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ---------AQDNFMMMDDAVLCISF-------S 272 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh---------hhcceeecccceEEEee-------c
Confidence 3456677899999999999999999999999999998775544321 22244556789999999 8
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeee-cccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
.|...|++|+.||.|++|.+.+|.+++.+. .|. ..|+++.|+.|+..++ ++.|.++++.-+..+ .
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt-----kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--------K 339 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT-----KGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--------K 339 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc-----cCeeEEEEccCcchhhcccccceEEEeccccc--------h
Confidence 899999999999999999999999998887 333 3899999999998887 569999999998773 3
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc--ccCeEEEEEccCC-CEEEEEecCCCeE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVQFSRDG-NYLYTGGRKDPYI 290 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~~d~~i 290 (430)
..+.+.+|.+.|+...|.+ +++.+++++.||+|++|+..+.+++.+++.. ..+|+++-.-|.+ ..++++. ..++|
T Consensus 340 ~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv 417 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTV 417 (508)
T ss_pred hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeE
Confidence 4455689999999999999 6779999999999999999999998888743 4578888877754 4677777 88999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++.++.. +.+..+.......+...++..+|.|.++.+.++|+.++.|.+.+|++...+..|+..|.+++-+|..++||
T Consensus 418 ~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 418 YIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred EEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence 9998865 44444444444556677888999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeecC
Q 014125 371 SSSGHRRFPVDD 382 (430)
Q Consensus 371 s~~~d~~~~vw~ 382 (430)
+-+.||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999877777773
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=231.27 Aligned_cols=281 Identities=19% Similarity=0.239 Sum_probs=233.4
Q ss_pred ecccCCCceeEEEECc---CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 55 TSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+-.||+.+|-.++||| +|-+|++++.||.-.+-+=+++.... .+.+|.+.|+..+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig-----------------tfeghkgavw~~~l---- 67 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG-----------------TFEGHKGAVWSATL---- 67 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE-----------------eeeccCcceeeeec----
Confidence 5679999999999986 89999999999987776665554332 34456688988877
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+.+....++++.|-+-++||.-+|..+..+.... -|.+++|+.|..+|++ |.++-++|||++.+..+.
T Consensus 68 ---~~na~~aasaaadftakvw~a~tgdelhsf~hkh------ivk~~af~~ds~~lltgg~ekllrvfdln~p~App-- 136 (334)
T KOG0278|consen 68 ---NKNATRAASAAADFTAKVWDAVTGDELHSFEHKH------IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-- 136 (334)
T ss_pred ---Cchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh------eeeeEEecccchhhhccchHHHhhhhhccCCCCCc--
Confidence 5566678899999999999999998887765432 7889999999999985 589999999998865433
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
....+|.+.|..+.|.. ..+.+++++.|++|++||.+++..++.+. ...+|+++.++++|++|.++ ..+.|
T Consensus 137 -----~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV 207 (334)
T KOG0278|consen 137 -----KEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSV 207 (334)
T ss_pred -----hhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCcee
Confidence 33478999999999998 66788888999999999999999999987 56789999999999877655 58899
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 369 (430)
.+||..+...+. . ......|.+.+++|+...+++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|..-
T Consensus 208 ~Fwdaksf~~lK-s----~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 208 KFWDAKSFGLLK-S----YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred EEecccccccee-e----ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 999998764331 2 235567889999999999999999999999999999998886 8999999999999999999
Q ss_pred EEeeCCceeeec
Q 014125 370 ASSSGHRRFPVD 381 (430)
Q Consensus 370 ~s~~~d~~~~vw 381 (430)
++|+.||+|++|
T Consensus 283 AsGSEDGTirlW 294 (334)
T KOG0278|consen 283 ASGSEDGTIRLW 294 (334)
T ss_pred eccCCCceEEEE
Confidence 999854444444
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=240.40 Aligned_cols=258 Identities=19% Similarity=0.302 Sum_probs=219.5
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..++..+|+.+-| .|+-..++++++|++|++||..+++....+++|.. .+..++|+..|++++ ++.|
T Consensus 104 l~g~r~~vt~v~~-------hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-----sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 104 LAGHRSSVTRVIF-------HPSEALVVSASEDATIKVFDTETGELERSLRGHTD-----SVFDISFDASGKYLATCSSD 171 (406)
T ss_pred hhccccceeeeee-------ccCceEEEEecCCceEEEEEccchhhhhhhhcccc-----ceeEEEEecCccEEEecCCc
Confidence 3446678888888 45667899999999999999999999888888876 799999999999999 5578
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
-.+.+||.... ........+|...|.+++|-| .+..+++++.|.+|+.|+..++-++.++.+|...|..++.
T Consensus 172 l~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 172 LSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred cchhheeHHHH-------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 78999998652 222333468888999999999 5689999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC---------------CCEEEEEccCCcEEE
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS---------------GRHLGTGGQDGLVHI 338 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~v 338 (430)
+.||..+++++ .|.+|++|-+.+.... .....|..+|.+++|.|. +.++++++.|++|++
T Consensus 244 ~~DGti~As~s-~dqtl~vW~~~t~~~k----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 244 NQDGTIIASCS-NDQTLRVWVVATKQCK----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred cCCeeEEEecC-CCceEEEEEeccchhh----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 99999999999 9999999999876332 122567888888988762 369999999999999
Q ss_pred EEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 339 YDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
||+.++.++.++.+|...|.+++|+|.|++|+++.. |+++++||+...++|.++..|..
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-----------------Dktlrvwdl~~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-----------------DKTLRVWDLKNLQCMKTLEAHEH 377 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-----------------CCcEEEEEeccceeeeccCCCcc
Confidence 999999999999999999999999999999999984 56666666666666666665544
No 44
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=232.75 Aligned_cols=313 Identities=14% Similarity=0.242 Sum_probs=238.9
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccc-cccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-LAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+..|..++++.+|||||.++|||+.|..|+|.|++............ ...............|...|.++.|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F---- 180 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF---- 180 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee----
Confidence 45678999999999999999999999999999999987322211111111 1112223556677889999999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|...+|++|+.|++|+++|.......+.++... ...+|.++.|+|.|.+|++| .-..+++||+++-..
T Consensus 181 ---HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q---d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc---- 250 (430)
T KOG0640|consen 181 ---HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ---DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC---- 250 (430)
T ss_pred ---cchhheEEeccCCCeEEEEecccHHHHHHHHHhh---ccceeeeEeecCCCceEEEecCCCceeEEeccceeE----
Confidence 5568899999999999999997655444444332 23389999999999999988 557899999987322
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-cccc-CeEEEEEccCCCEEEEEecCCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEG-GVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
+. .......|.+.|+++.+++ .+++.++|+.||.|++||--+++++.++. .|.+ .|.+..|..+|++++++| .|.
T Consensus 251 fv-sanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS 327 (430)
T KOG0640|consen 251 FV-SANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDS 327 (430)
T ss_pred ee-ecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-Ccc
Confidence 11 1123467889999999999 78899999999999999988888887765 4554 799999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPF 365 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~ 365 (430)
.+++|.+.++.......... .+....-+...|+....|++.-.+ .+.+.-||.++...+..+ .+|.+.++.+.-+|.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 99999999986553322110 111222345667777778776654 467999999998766555 479999999999999
Q ss_pred CcEEEEeeCCceeeecC
Q 014125 366 LPMAASSSGHRRFPVDD 382 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~ 382 (430)
++.+++|+.|.+.++|-
T Consensus 408 ~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCceeeecccceeeeee
Confidence 99999999877777774
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-34 Score=222.77 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=226.2
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.++||..+++.|.|+.+|.+|.+|+.|.+..||--.+++.+. ...+|.+.|+++.-
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-----------------ty~GHtGavW~~Di------- 60 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-----------------TYDGHTGAVWCCDI------- 60 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-----------------eecCCCceEEEEEe-------
Confidence 578999999999999999999999999999999765554332 34457789999987
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc------CCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY------NKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~ 208 (430)
+.+...+++|+.|.++++||+++|+.+..++... +|..+.|+++|.+++.+. .+.|.++|++......
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 6688899999999999999999999999988765 899999999999988543 3679999998643221
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
... .+......+...++.+.|.| -+..|++|.+||.|..||.+++ +.+...+.|...|+.++++|+..++++++ .|
T Consensus 135 ~s~-ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~D 211 (327)
T KOG0643|consen 135 DSE-EPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KD 211 (327)
T ss_pred ccc-CceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cC
Confidence 111 11111234457899999999 7779999999999999999997 45666678999999999999999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE--EEcCCC------------Ceecccccc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI--YDLQTG------------KWISGFQAA 353 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~------------~~~~~~~~~ 353 (430)
.+-++||+++... .+.. ....++++.+++|...+++.|+...-.-| =+.+.| +.+..+++|
T Consensus 212 ttakl~D~~tl~v-~Kty----~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 212 TTAKLVDVRTLEV-LKTY----TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred ccceeeeccceee-EEEe----eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 9999999998643 3232 34678999999998877776664332222 222223 345677899
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
-++|++++|||+|+..++|+.||.|++
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEE
Confidence 999999999999988888775444444
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=219.18 Aligned_cols=265 Identities=20% Similarity=0.300 Sum_probs=212.3
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
...|.+.++.++|+|. .|..||+|+.|..|++|+...+.... .+..-...|...|.+++|+|.|++|++ +.|
T Consensus 10 ~~gh~~r~W~~awhp~------~g~ilAscg~Dk~vriw~~~~~~s~~-ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPG------KGVILASCGTDKAVRIWSTSSGDSWT-CKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccC------CceEEEeecCCceEEEEecCCCCcEE-EEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 3346678999999653 17799999999999999998543322 221122245569999999999999994 599
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc---eeeEEeeccccCeEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEGGVTH 270 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~ 270 (430)
.++.||.-... .++ ....+++|...|.+++|++ ++++||+++.|..|.+|..... ++...++.|...|-.
T Consensus 83 ~t~~Iw~k~~~--efe----cv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 83 ATVVIWKKEDG--EFE----CVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ceEEEeecCCC--cee----EEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 99999986532 222 2344589999999999999 7889999999999999998743 578889999999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.|+|....|++++ .|++|++|+-.... -........+|.+.|.+++|+|.|..|++++.|++|+||.+.+.- -
T Consensus 156 V~WHPt~dlL~S~S-YDnTIk~~~~~~dd-dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~ 229 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCS-YDNTIKVYRDEDDD-DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----S 229 (312)
T ss_pred EEEcCCcceeEEec-cCCeEEEEeecCCC-CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----c
Confidence 99999999999999 99999999877322 111223336888899999999999999999999999999876321 1
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecC---------------------------------CCccccccCCCcEEE
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDD---------------------------------FEDLHLSGDENCVSV 397 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~---------------------------------~~~l~~~~~d~~i~~ 397 (430)
..|...+..++|. ...|++++.|+.++++. .+.|+++|+||.|++
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 3477899999998 67899999999999981 123899999999999
Q ss_pred Eeec
Q 014125 398 WSFL 401 (430)
Q Consensus 398 w~~~ 401 (430)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9874
No 47
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=243.42 Aligned_cols=305 Identities=17% Similarity=0.220 Sum_probs=239.8
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
--.+.+|+..|.++++.|.|..|++||.|-+|++||+....... .....+.-...+.|.+++|
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------~~fr~l~P~E~h~i~sl~y----- 222 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------RSFRQLQPCETHQINSLQY----- 222 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------hhhhccCcccccccceeee-----
Confidence 34678999999999999999999999999999999998653311 1122233345578999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecc-------cccccccceEEEEECCCCc--EEEEEcCCeEEEEEcCC
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-------DAVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~--~l~~~~d~~i~v~d~~~ 203 (430)
++.|..|++.+.....+|+|-...+.....++. ...+|...+++.+|+|..+ +|.++.||++++||+..
T Consensus 223 --s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 223 --SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred --cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 667889999999999999997655544443332 3345777899999999864 55578999999999987
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeecccc--CeEEEEEccCCC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEG--GVTHVQFSRDGN 278 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~--~i~~~~~~~~~~ 278 (430)
.......+.... ..+..-+++.++|+| ++.+||+|+.||.|.+|+..+.. ....-.+|.. .|+||.||++|+
T Consensus 301 ~k~q~qVik~k~--~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 301 TKSQLQVIKTKP--AGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred chhheeEEeecc--CCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 655444433222 235556899999999 66689999999999999976542 2233456776 899999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc------CCcEEEEEcCCCCeeccccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ------DGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~ 352 (430)
+|++-+ .|+++++||+++.++.+..... ....-+-+.++|||+.++|++|+. .|.+++||..+...++.+..
T Consensus 378 ~LlSRg-~D~tLKvWDLrq~kkpL~~~tg-L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 378 YLLSRG-FDDTLKVWDLRQFKKPLNVRTG-LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhhcc-CCCceeeeeccccccchhhhcC-CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 999999 9999999999998766543322 223345577999999999999975 46799999999999999888
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
....|..+.|||.-+.|+.++.||.++|+
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeecchhhheeeecCCCceEEE
Confidence 88899999999999999999999888887
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=256.90 Aligned_cols=304 Identities=16% Similarity=0.239 Sum_probs=254.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..-+..|..++|+|...+++++-..|.|++||..-+.+.. .+..|.++|+.++| +|
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-----------------rFdeHdGpVRgv~F-------H~ 61 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-----------------RFDEHDGPVRGVDF-------HP 61 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh-----------------hhhccCCccceeee-------cC
Confidence 3445679999999999999999999999999997554332 34457799999999 55
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
...+|++|+.|-.|+||+..+.+++.++.+|.. -|..+.|++.-.+|+ ++.|.+|+||+..+ ....
T Consensus 62 ~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-----YVRt~~FHheyPWIlSASDDQTIrIWNwqs--------r~~i 128 (1202)
T KOG0292|consen 62 TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-----YVRTVFFHHEYPWILSASDDQTIRIWNWQS--------RKCI 128 (1202)
T ss_pred CCCeEEecCCccEEEEEecccceehhhhccccc-----eeEEeeccCCCceEEEccCCCeEEEEeccC--------CceE
Confidence 688999999999999999999999999888776 899999999999999 56899999999987 3444
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-----------------------------eeEEeecccc
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----------------------------LLYVLHGQEG 266 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------------------------~~~~~~~~~~ 266 (430)
..+.+|...|.|..|+| ...++++++-|.+|++||+..-+ ....+.+|..
T Consensus 129 avltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR 207 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR 207 (1202)
T ss_pred EEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence 55689999999999999 67799999999999999964210 1245678999
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
.|+-++|+|.-..|++|+ .|..|++|.+...+.- ......+|.+.|.++-|+|...++++.|+|++|+|||+...+.
T Consensus 208 GVNwaAfhpTlpliVSG~-DDRqVKlWrmnetKaW--EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAW--EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred ccceEEecCCcceEEecC-CcceeeEEEeccccce--eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 999999999999999999 9999999999765322 3344478999999999999999999999999999999999999
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec-CCCc---------cccccCCCcEEEEeecc
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD-DFED---------LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw-~~~~---------l~~~~~d~~i~~w~~~~ 402 (430)
+++++...+.-+.++-+|..+++++|-..|.+.+- +.+. |...- |..|+.+|+.+
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccc
Confidence 99999888899999999999999888766654332 2222 33333 78888888886
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=220.95 Aligned_cols=281 Identities=18% Similarity=0.307 Sum_probs=218.8
Q ss_pred eEEEECc-CCceEEEec-------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 64 KGIKWSP-DGSSFLTSS-------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 64 ~~~~~sp-~~~~l~s~~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
.++.||| -.++||.+. ..|++.|.++...+ .......+.-...+.+++|++.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---------------gi~e~~s~d~~D~LfdV~Wse~----- 71 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---------------GIQECQSYDTEDGLFDVAWSEN----- 71 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC---------------CeEEEEeeecccceeEeeecCC-----
Confidence 5789999 233444332 36888998886332 3334445556678999999764
Q ss_pred CCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
..+.+++++.||++++||+.. ..++..++.|.. +|.++.|++..+..+ ++.|++|++|+...+..
T Consensus 72 -~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-----EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S------ 139 (311)
T KOG0277|consen 72 -HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-----EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS------ 139 (311)
T ss_pred -CcceEEEEecCceEEEeccCCCCcchhHHHhhhh-----heEEeccccccceeEEeeccCCceEeecCCCCcc------
Confidence 356899999999999999643 345666666655 999999998765444 56999999999987432
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYIL 291 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~ 291 (430)
...+.+|...|...+|+|..++++++++.|+++++||++.......+..|...|.++.|+.-.. .+++++ .|+.|+
T Consensus 140 --v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~-vd~~vr 216 (311)
T KOG0277|consen 140 --VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG-VDNLVR 216 (311)
T ss_pred --eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC-CCceEE
Confidence 2225789999999999999999999999999999999987655556889999999999998555 455555 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCC-CeecccccccCCeeEEEEcCC-CcE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHPF-LPM 368 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~ 368 (430)
+||+++.+.++..+ .+|.-.|..+.|||.. ..|++++.|-+++|||...+ ..+.+...|+.-|.++.|++. ..+
T Consensus 217 ~wDir~~r~pl~eL---~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~ 293 (311)
T KOG0277|consen 217 GWDIRNLRTPLFEL---NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQ 293 (311)
T ss_pred EEehhhccccceee---cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCce
Confidence 99999887665444 7899999999999974 67999999999999999854 456677788889999999984 447
Q ss_pred EEEeeCCceeeecC
Q 014125 369 AASSSGHRRFPVDD 382 (430)
Q Consensus 369 l~s~~~d~~~~vw~ 382 (430)
+|+++.|+.+.||+
T Consensus 294 vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 294 VASTGWDELLYVWN 307 (311)
T ss_pred eeecccccceeeec
Confidence 77777766666665
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=254.16 Aligned_cols=256 Identities=23% Similarity=0.388 Sum_probs=211.4
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEEE-cCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK 194 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~ 194 (430)
+...|.++.| +++|+.+++++.++.+++|+....+ ....+..|. ..|..++|+|++++++++ .|+
T Consensus 158 ~~~sv~~~~f-------s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~-----~~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 158 ECPSVTCVDF-------SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT-----RGVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred ccCceEEEEE-------cCCCCeEEEccCCCcEEEeecccccchhhccccccc-----cceeeeEECCCCcEEEEecCCc
Confidence 3567888887 8899999999999999999997776 444443333 499999999999999954 999
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
+|++||+.... .....+.+|...|++++|+|++ +++++|+.|++|++||++++++...+.+|...|++++|+
T Consensus 226 tiriwd~~~~~-------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 226 TLRIWDLKDDG-------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred eEEEeeccCCC-------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 99999995432 2333347999999999999966 999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
+++.+|++++ .|+.|++||+.++... ...+....... .++.+.|+|++.++++++.|+.+++||+..++.+..+.+|
T Consensus 298 ~d~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 298 PDGNLLVSAS-YDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CCCCEEEEcC-CCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 9999999998 8999999999998632 22222212222 6999999999999999999999999999999999999998
Q ss_pred cCCe---eEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 354 ADTV---NGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 354 ~~~v---~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
...+ .+...++.+.++++++ .|+.|++|+...+..+..+.+|
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~-----------------~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGS-----------------EDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCcceeEecccccCCCCeEEEEe-----------------CCceEEEEeCCccchhhhhcCC
Confidence 8753 3444567788888887 5677777777777777777777
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-34 Score=249.28 Aligned_cols=291 Identities=17% Similarity=0.196 Sum_probs=244.9
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
-...||+..|+++++|.+...+++|+. +.++||+..+.+....+. . +-+.+.+|.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~------------------~-~y~l~~~Fv----- 421 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT------------------C-GYILASKFV----- 421 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec------------------c-ccEEEEEec-----
Confidence 367899999999999999888888765 589999998775543222 1 367777784
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCC----cc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR----DF 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~----~~ 208 (430)
|.++++++|...|.+.++|+.+...+.+++.|.+ .|++++.+||++.++ +|.|.+|++||...... ..
T Consensus 422 --pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-----aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 422 --PGDRYIVLGTKNGELQVFDLASASLVETIRAHDG-----AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred --CCCceEEEeccCCceEEEEeehhhhhhhhhcccc-----ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 4688999999999999999999998888887776 999999999999888 56999999999753211 11
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
+.........-.-...|.|+.++| ++.+|+++--|.+|++|-+++-+....+-+|.-||.|+..+||++.+++++ .|.
T Consensus 495 k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADK 572 (888)
T KOG0306|consen 495 KVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADK 572 (888)
T ss_pred eeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCC
Confidence 111111111123356799999999 778999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
.|++|-+.-+.+.. ...+|...|.++.|-|....+++++.|+.|+-||-...+.++.+.+|...|++++..|+|.+
T Consensus 573 nVKiWGLdFGDCHK----S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHK----SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred ceEEeccccchhhh----hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence 99999998775432 22589999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCceeeecC
Q 014125 369 AASSSGHRRFPVDD 382 (430)
Q Consensus 369 l~s~~~d~~~~vw~ 382 (430)
+++++.|..+++|.
T Consensus 649 vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWE 662 (888)
T ss_pred EEeccCCceeEeee
Confidence 99999888888884
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=237.13 Aligned_cols=289 Identities=13% Similarity=0.197 Sum_probs=232.7
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+. .......+..++|..+.|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------~~~~tLaGs~g~it~~d~---- 227 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------ELISTLAGSLGNITSIDF---- 227 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------hhhhhhhccCCCcceeee----
Confidence 4457889999999999999989999999999999999876541 111223334467999998
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
.+++..+++++.|+.+++|++...+...++.+|.. .|+++.|......+++ +.|.+|++||+.... ..+.
T Consensus 228 ---d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt 298 (459)
T KOG0288|consen 228 ---DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD-----KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKT 298 (459)
T ss_pred ---cCCCceEEeecCCCceeeeeccchhhhhhhccccc-----ceeeehhhccccceeeccccchhhhhhhhhhh-eecc
Confidence 77899999999999999999999999999998776 8999999877765664 599999999997621 1111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.+. ...+..+..+ ...+++|..|++|++||.++..+......+ +.|+++..+++|..|++++ .|.++
T Consensus 299 ------~l~--~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsss-RDdtl 365 (459)
T KOG0288|consen 299 ------VLP--GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSS-RDDTL 365 (459)
T ss_pred ------ccc--cccccceEec---ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeec-CCCce
Confidence 111 1235555554 347889999999999999999999888866 4899999999999999998 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC--CeeEEEEcCCCcE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD--TVNGFSFHPFLPM 368 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 368 (430)
.+.|+++..................+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 99999987533222111122334588899999999999999999999999999999888876554 4999999999999
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999987777777
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.8e-35 Score=242.80 Aligned_cols=263 Identities=14% Similarity=0.274 Sum_probs=218.6
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-E
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A 190 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (430)
....+|...|.++.|.|. .+.+|++++.|+.|+||++.. +.+++++.+|.. +|..++|+++|..++ +
T Consensus 208 ~~~~gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-----~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-----PVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeccCCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchh-----hhhhhhccccCCeeeee
Confidence 345678899999999663 678999999999999999877 889999998876 999999999998887 6
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+.|+.|++||++++..... ......++|+.|+|++.+.+++|..|+.|+.||+++++.++.+..|-+.|..
T Consensus 277 sfD~~lKlwDtETG~~~~~---------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSR---------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred ecceeeeeeccccceEEEE---------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 7999999999998532211 1122458999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC---Cee
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG---KWI 347 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~ 347 (430)
+.|-++|+.+++++ .|+.++||+.+.+....... ......+.++..+|++.++++-+.|+.|.++.+... ...
T Consensus 348 i~F~~~g~rFissS-Ddks~riWe~~~~v~ik~i~---~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 348 ITFVDEGRRFISSS-DDKSVRIWENRIPVPIKNIA---DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred eEEccCCceEeeec-cCccEEEEEcCCCccchhhc---chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 99999999999999 99999999998874433222 223334567889999999999999999999997643 234
Q ss_pred cccccccC--CeeEEEEcCCCcEEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEe
Q 014125 348 SGFQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 348 ~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~ 399 (430)
+.+.+|.. --..+.|+|||.+|++|+.||.+.+||-.. ++++|.||.|++|+
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 56777764 356789999999999999999988885433 78888888888885
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-32 Score=214.45 Aligned_cols=279 Identities=19% Similarity=0.273 Sum_probs=216.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+.+..-.+.|+++.|+++|.+|++++.|.+++|||..+++....+...+ -.+..++|
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-----------------yG~~~~~F----- 64 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-----------------YGVDLACF----- 64 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-----------------ccccEEEE-----
Confidence 33445567789999999999999999999999999999886654433322 24445555
Q ss_pred ccCCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
......++.++. |.+|+..++.+.+.++.+.+|.. .|.+++.+|-+..++ ++.|++|++||++.......
T Consensus 65 --th~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~-----~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 65 --THHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK-----RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred --ecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc-----eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 223334555554 88999999999999999999887 999999999988777 55999999999986432211
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--eeeEEee---ccccCeEEEEEccCCCEEEEEe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLH---GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
. +...-..++|+| .+-++|++.....|++||++.. .+...+. ......+.|.|+|+|++|+.+.
T Consensus 138 l----------~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 138 L----------NLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred E----------ecCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 1 112234679999 7778888888889999999864 3444443 2356789999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFH 363 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~ 363 (430)
..+.+++.|.-.+.... ..........-....+|+||++++++|+.||+|.+|++++++.+..+.+ +.+++.++.|+
T Consensus 207 -~~s~~~~lDAf~G~~~~-tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 207 -NASFIYLLDAFDGTVKS-TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred -CCCcEEEEEccCCcEee-eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 89999999998885332 2222222222236788999999999999999999999999999999998 68899999999
Q ss_pred CCCcEEEEee
Q 014125 364 PFLPMAASSS 373 (430)
Q Consensus 364 ~~~~~l~s~~ 373 (430)
|...++++++
T Consensus 285 P~~~mf~sa~ 294 (311)
T KOG1446|consen 285 PRYAMFVSAS 294 (311)
T ss_pred CceeeeeecC
Confidence 9999998886
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-33 Score=233.59 Aligned_cols=277 Identities=15% Similarity=0.274 Sum_probs=229.3
Q ss_pred CCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.+.|.+++|||... -+|+.+. -.+.||+..+......+ ......|++++| -.||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-----------------srFk~~v~s~~f-------R~DG 80 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-----------------SRFKDVVYSVDF-------RSDG 80 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-----------------HhhccceeEEEe-------ecCC
Confidence 34699999999543 3444443 37999988765433222 222367899998 6699
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+|+.|...|.|+++|+.+...+..+..|.. ++..+.|+|++..++ .| .|+.+++||+.+.. ...
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-----pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------v~~ 147 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQA-----PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------VQA 147 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccC-----ceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------EEE
Confidence 9999999999999999777666777777776 999999999886666 44 77889999998742 233
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
.+.+|+..|+|.+|+|....++++|+.||+|++||.+.. ..+..+. |..+|..+.+-|.|..+++++ ...|++||+
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl 224 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDL 224 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEe
Confidence 568999999999999988889999999999999999987 5666665 999999999999999999887 789999999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.++.+..... ..|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|-.+
T Consensus 225 ~~G~qll~~~---~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 225 TTGGQLLTSM---FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred cCCceehhhh---hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccc
Confidence 9887665443 4589999999999999999999999999999999999998887 56899999999999999999998
Q ss_pred ceeeec
Q 014125 376 RRFPVD 381 (430)
Q Consensus 376 ~~~~vw 381 (430)
|.+.+-
T Consensus 301 Glv~~r 306 (487)
T KOG0310|consen 301 GLVSIR 306 (487)
T ss_pred ceeeee
Confidence 888765
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-32 Score=266.58 Aligned_cols=240 Identities=16% Similarity=0.220 Sum_probs=196.6
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--------eeeeeecccccccccceEEEEECCC-CcE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--------LRCTYRAYDAVDEITAAFSVAFNPT-GTK 187 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 187 (430)
.|...|.+++| +|++.+|++|+.|+.|++|++.... ....+. ....+.+++|+|. +.+
T Consensus 481 ~~~~~V~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA------SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEE-------CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec------ccCceeeEEeccCCCCE
Confidence 47789999999 7789999999999999999975421 111111 1237889999875 567
Q ss_pred EE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc
Q 014125 188 IF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 188 l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
|+ ++.|+.|++||+.+. .......+|...|.+++|+|.++.+|++|+.|++|++||++++..+..+..+ .
T Consensus 548 las~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~ 618 (793)
T PLN00181 548 VASSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-A 618 (793)
T ss_pred EEEEeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-C
Confidence 77 458999999999763 1222346788999999999867789999999999999999999888887744 6
Q ss_pred CeEEEEEc-cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC--
Q 014125 267 GVTHVQFS-RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-- 343 (430)
Q Consensus 267 ~i~~~~~~-~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 343 (430)
.+.++.|+ +++.+|++++ .||.|++||+++.......+ .+|...|.++.|. ++.+|++++.|+.|++||++.
T Consensus 619 ~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred CeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEe---cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 79999995 5788999998 99999999998764333222 5788899999997 678999999999999999974
Q ss_pred ----CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 344 ----GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 344 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+++..+.+|...+..++|+|++.+|++|+.|+.+++|+.
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 3567888999999999999999999999999999999974
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=217.85 Aligned_cols=269 Identities=21% Similarity=0.302 Sum_probs=214.6
Q ss_pred ceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-
Q 014125 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF- 189 (430)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 189 (430)
.....+|.+.|+.+.| +|+|.+|++|+.|..|.+|++.. .+....+++|.. .|..+.|.+|+..|+
T Consensus 40 ~m~l~gh~geI~~~~F-------~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKF-------HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILS 107 (338)
T ss_pred hhhcCCCcceEEEEEE-------CCCCCeEeecCCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEE
Confidence 3456778899999999 77899999999999999999643 344556666655 999999999999999
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
+|.|.+|+.||++++. ......+|..-+.++.-..-+..++.+++.|+++++||+++...++++. ....++
T Consensus 108 ~gtDk~v~~wD~~tG~--------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGK--------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred ecCCceEEEEecccce--------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 6799999999999853 3333478888899988666677789999999999999999998888775 456799
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----C
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----K 345 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~ 345 (430)
++.|...+..+.+++ -|+.|++||++..... +...+|...|+.+..+|+|.++.+-+.|.++++||++.. +
T Consensus 179 Av~f~d~s~qv~sgg-Idn~ikvWd~r~~d~~----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGG-IDNDIKVWDLRKNDGL----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEEecccccceeecc-ccCceeeeccccCcce----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 999999999999999 9999999999887433 233789999999999999999999999999999999853 3
Q ss_pred eecccccccC----CeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeec
Q 014125 346 WISGFQAAAD----TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQS 421 (430)
Q Consensus 346 ~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 421 (430)
++..+.+|.. ....++|+|++..+.+++.|+ .+++||..+-..+..+-||.+ .++++.
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-----------------~vyvwd~~~r~~lyklpGh~g-svn~~~ 315 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-----------------FVYVWDTTSRRILYKLPGHYG-SVNEVD 315 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccc-----------------eEEEeecccccEEEEcCCcce-eEEEee
Confidence 4667776644 467789999999999988655 455555555555555555555 334444
Q ss_pred cCc
Q 014125 422 EHE 424 (430)
Q Consensus 422 ~~~ 424 (430)
.++
T Consensus 316 Fhp 318 (338)
T KOG0265|consen 316 FHP 318 (338)
T ss_pred ecC
Confidence 443
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8e-32 Score=233.80 Aligned_cols=241 Identities=27% Similarity=0.414 Sum_probs=203.3
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCe
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKS 195 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~ 195 (430)
.|..+|.+++| +|++++|++++.||.+++|++.+++....+..+.. .+..+.|+|+++++++ +.++.
T Consensus 7 ~h~~~i~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 7 GHTGGVTCVAF-------SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred ccCCCEEEEEE-------cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcCCCe
Confidence 56689999999 66889999999999999999998887777666554 7789999999988775 47999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
|++|++.... .......|...+.++.|+| .+.++++++.++.|.+||+++++....+..|...+.+++|+|
T Consensus 75 i~i~~~~~~~--------~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 75 IRLWDLETGE--------CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEEcCccc--------ceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 9999998631 1122245667899999999 467888888899999999998888888888999999999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++.++++++ .|+.|++||++...... .+ ..+...+.++.|+|+++.+++++.|+.|++||+++++.+..+..|..
T Consensus 146 ~~~~l~~~~-~~~~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 146 DGTFVASSS-QDGTIKLWDLRTGKCVA-TL---TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred cCCEEEEEc-CCCcEEEEEccccccce-eE---ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence 988888777 79999999998664332 22 35677899999999999999999999999999999999999988999
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+.++.|+|++.++++++.++.+++|+.
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 9999999999888888876777777754
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=208.25 Aligned_cols=264 Identities=16% Similarity=0.270 Sum_probs=215.1
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
...+.++|.++.| +-+|++.++++.|.+|++|++..+.++.++..|.. +|..++.+.|+..++ +|.|
T Consensus 13 l~~~qgaV~avry-------N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-----EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 13 LDCAQGAVRAVRY-------NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-----EVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred ecccccceEEEEE-------ccCCCEEEEcCCCceEEeecccccceeeeecCCCc-----eeeeccccccccccccCCCC
Confidence 3456689999999 77999999999999999999999999999999887 999999999998888 6699
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--eeeEEeeccccCeEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHV 271 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~ 271 (430)
..+.+||+.++ .....+.+|...|+.+.|+. ....+++|+.|.++++||-++. ++++.+......|.++
T Consensus 81 k~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 81 KAVQVWDVNTG--------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred ceEEEEEcccC--------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 99999999984 33344589999999999998 7779999999999999998764 6788888778899999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
..+ +..|++|+ .||+++.||++.+.... .....+|++++|+++++.++.++.|+++++.|-.+|++++.++
T Consensus 152 ~v~--~heIvaGS-~DGtvRtydiR~G~l~s------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 152 DVA--EHEIVAGS-VDGTVRTYDIRKGTLSS------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred Eec--ccEEEeec-cCCcEEEEEeecceeeh------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence 984 55688888 99999999999884321 3356789999999999999999999999999999999999999
Q ss_pred cccCCee--EEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeeccCcc
Q 014125 352 AAADTVN--GFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHEN 425 (430)
Q Consensus 352 ~~~~~v~--~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
+|...-. ..+++.....+++|+ +||.|.+||+..+..+..+.-+.......+.+|+.
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgS-----------------EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGS-----------------EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred ccccceeeeeeeecccceeEEecc-----------------CCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 9987543 345566556666666 55666666666666655555555443444444443
No 60
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.3e-32 Score=225.19 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=232.0
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccc--cccccCcccceeeecCCCeeeeeeeccc
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS--LAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+.....|.-+|.+++++||+++.++++.||+|.-|++.+++......... ...+........ ..|...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av--- 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV--- 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE---
Confidence 56788999999999999999999999999999999999887552222110 000111111111 267778888888
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
++|+++|++|+.|..|.||+..+.+.+..+..|.. .|.+++|-.....++ ++.|+.|++|+++.
T Consensus 211 ----S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----~V~~L~fr~gt~~lys~s~Drsvkvw~~~~------ 275 (479)
T KOG0299|consen 211 ----SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----AVSSLAFRKGTSELYSASADRSVKVWSIDQ------ 275 (479)
T ss_pred ----cCCCcEEEecCCCceEEEecCcccchhhccccccc-----ceeeeeeecCccceeeeecCCceEEEehhH------
Confidence 88999999999999999999999999999888776 999999976655555 77999999999976
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
......+.+|...|..+.... -.+.+.+|+.|+++++|++.. +....+.++.+.+-|++|-.+ ..+++|+ .+|.
T Consensus 276 --~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGS-dnG~ 349 (479)
T KOG0299|consen 276 --LSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGS-DNGS 349 (479)
T ss_pred --hHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeecc-CCce
Confidence 334445689999999998887 666777788999999999954 344467788899999999755 4688898 9999
Q ss_pred EEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----CeecccccccCCe
Q 014125 290 ILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQAAADTV 357 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v 357 (430)
|.+|++...+.......... .+..+|++++..|...++++|+.+|.|++|.+..+ .++..+. -.+-|
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfV 428 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFV 428 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEE
Confidence 99999987755433321111 12238999999999999999999999999999877 4455555 56789
Q ss_pred eEEEEcCCCcEEEEee
Q 014125 358 NGFSFHPFLPMAASSS 373 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~ 373 (430)
++++|+++|+.+++|.
T Consensus 429 Nsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEccCCCEEEEec
Confidence 9999999999777764
No 61
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=226.88 Aligned_cols=281 Identities=14% Similarity=0.194 Sum_probs=214.4
Q ss_pred eecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
..+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+... +..|.+.|..+++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-----------------f~AH~G~V~Gi~v----- 117 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-----------------FKAHEGLVRGICV----- 117 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-----------------eecccCceeeEEe-----
Confidence 3568999999999999976 7899999999999999987544333 3345589999998
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+...+++++.|.+|+.|.++.. +..++-... .+..+.-+..+..+++ ..-.|.|||.+...+
T Consensus 118 ----~~~~~~tvgdDKtvK~wk~~~~-p~~tilg~s------~~~gIdh~~~~~~FaT-cGe~i~IWD~~R~~P------ 179 (433)
T KOG0268|consen 118 ----TQTSFFTVGDDKTVKQWKIDGP-PLHTILGKS------VYLGIDHHRKNSVFAT-CGEQIDIWDEQRDNP------ 179 (433)
T ss_pred ----cccceEEecCCcceeeeeccCC-cceeeeccc------cccccccccccccccc-cCceeeecccccCCc------
Confidence 2367999999999999998653 444443322 4445555544545543 345799999976322
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
...+.-....|.++.|+|....+|+++..|+.|.+||+++..++..+. ....-+.|+|+|.+-.+.++. .|..++.
T Consensus 180 --v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~-ED~nlY~ 255 (433)
T KOG0268|consen 180 --VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAAN-EDHNLYT 255 (433)
T ss_pred --cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecc-cccccee
Confidence 222233345699999999888999999999999999999999887765 345568899999665566666 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcCCCcEEEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s 371 (430)
||++....+.. ...+|.+.|.+++|||.|+-+++||.|.+|+||.++.+.....+.. --..|.++.|+.|.+++++
T Consensus 256 ~DmR~l~~p~~---v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 256 YDMRNLSRPLN---VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred hhhhhhcccch---hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 99998765543 3378999999999999999999999999999999997765433321 1236999999999999999
Q ss_pred eeCCceeeec
Q 014125 372 SSGHRRFPVD 381 (430)
Q Consensus 372 ~~~d~~~~vw 381 (430)
||.|+.|++|
T Consensus 333 GSdd~nvRlW 342 (433)
T KOG0268|consen 333 GSDDGNVRLW 342 (433)
T ss_pred cCCCcceeee
Confidence 9854444444
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-32 Score=234.51 Aligned_cols=258 Identities=18% Similarity=0.256 Sum_probs=219.7
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 196 (430)
++..|.++.++| ....++++-.+|.|.||+.++...+..+..... +|.+..|-+...++++| .|..|
T Consensus 12 rSdRVKsVd~HP-------tePw~la~LynG~V~IWnyetqtmVksfeV~~~-----PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 12 RSDRVKSVDFHP-------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEV-----PVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred cCCceeeeecCC-------CCceEEEeeecCeeEEEecccceeeeeeeeccc-----chhhheeeeccceEEEecCCceE
Confidence 567899999955 567899999999999999999999999988776 89999999999999966 88999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~ 275 (430)
++|+..+.. ....+..|...|++++.+| ...++++++.|-+|++||.... .+.+++.+|...|++++|+|
T Consensus 80 rVfnynt~e--------kV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 80 RVFNYNTGE--------KVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP 150 (794)
T ss_pred EEEecccce--------eeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence 999998742 2334578999999999999 6679999999999999998764 67889999999999999999
Q ss_pred C-CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 276 D-GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 276 ~-~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
. .+.+++++ -|++|++|.+.++... ++..+|...|+++.+-+.| .+|++|++|..|+|||..+..+++++.+
T Consensus 151 kD~ntFaS~s-LDrTVKVWslgs~~~n----fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 151 KDPNTFASAS-LDRTVKVWSLGSPHPN----FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred CCccceeeee-ccccEEEEEcCCCCCc----eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 5 55788888 9999999999887533 2336899999999998755 6999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc--cccccCCCcEEEEeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED--LHLSGDENCVSVWSFL 401 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--l~~~~~d~~i~~w~~~ 401 (430)
|...|..+.|+|.-+++++|+.||+++||+..+ +-..-.=|.=|+|++.
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 999999999999999999999999999996544 1122223334556555
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-32 Score=209.63 Aligned_cols=260 Identities=18% Similarity=0.273 Sum_probs=204.4
Q ss_pred eeeeeeeccccCccCCCCceEEEE-----eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEE--EEEcC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI--FAGYN 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d 193 (430)
.-+++.|+|.. ++.-.+|++ ...|.+.|.++...+-+..+..... ...+..++|++....+ +++.|
T Consensus 10 ~GysvqfSPf~----~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~GD 82 (311)
T KOG0277|consen 10 HGYSVQFSPFV----ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAASGD 82 (311)
T ss_pred ccceeEecccc----cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEecC
Confidence 34667787742 111122222 2368899999976655555544332 2378899999876443 36699
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
|++++||+..+..+. ...+.|...|.++.|++.....+++++.|++|++|+..-++.+.++.+|...|...+|
T Consensus 83 GSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF 155 (311)
T ss_pred ceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence 999999976554332 3346788899999999988889999999999999999999999999999999999999
Q ss_pred ccCC-CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCC-Ceeccc
Q 014125 274 SRDG-NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTG-KWISGF 350 (430)
Q Consensus 274 ~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-~~~~~~ 350 (430)
+|.. +.+++++ .|+.+++||++...+... + ..|...+.++.|+.- ...|++|+.|+.|++||+++- .++..+
T Consensus 156 sp~~~nlfas~S-gd~~l~lwdvr~~gk~~~-i---~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 156 SPHIPNLFASAS-GDGTLRLWDVRSPGKFMS-I---EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred CCCCCCeEEEcc-CCceEEEEEecCCCceeE-E---EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence 9964 4566666 999999999998765543 2 578889999999974 467999999999999999874 568889
Q ss_pred ccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCc---------------------------cccccCCCcEEEEe
Q 014125 351 QAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFED---------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~---------------------------l~~~~~d~~i~~w~ 399 (430)
.+|.-.|+.++|+|... +|++++.|-+++||+.+. ++++|.|..++||+
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99999999999999754 889999999999996552 77888888888886
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-32 Score=243.94 Aligned_cols=265 Identities=18% Similarity=0.246 Sum_probs=230.0
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
+..|..++|+| ....++++-..|.|++||.+-+.++..|..|.+ +|..++|+|++.++++| .|-.|+
T Consensus 9 SsRvKglsFHP-------~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-----pVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 9 SSRVKGLSFHP-------KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-----PVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred cccccceecCC-------CCCEEEEeecCceeeeehhhhhhHHhhhhccCC-----ccceeeecCCCCeEEecCCccEEE
Confidence 35788899954 567999999999999999999999999988877 99999999999999955 889999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+|+... ......+.+|-..|+.+.|++ .-.++++++.|.+|+||+..+.+++..+.+|...|+|.+|+|..
T Consensus 77 VWnYk~--------rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 77 VWNYKT--------RRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred EEeccc--------ceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 999977 344555689999999999999 77799999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceE-------------------------EEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQV-------------------------VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..+++++ -|.+||+||+..-+.. ....+...+|...|+-++|+|.-.++++|++
T Consensus 148 DlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 148 DLIVSAS-LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred ceEEEec-ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 9999999 9999999998632110 0011223689999999999999999999999
Q ss_pred CCcEEEEEcCCCCe--ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc------------------------c
Q 014125 333 DGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------------------L 386 (430)
Q Consensus 333 dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------------------l 386 (430)
|..|++|.++..+. +-+..+|.+.|.++-|+|...++++.+.|+.++|||.+. |
T Consensus 227 DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL 306 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL 306 (1202)
T ss_pred cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence 99999999986543 667889999999999999999999999999999997654 7
Q ss_pred ccccCCCcEEEEeeccccc
Q 014125 387 HLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 387 ~~~~~d~~i~~w~~~~~~~ 405 (430)
..+|+|+.+.++.++....
T Consensus 307 fAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeecCCceEEEEEcccCc
Confidence 7889999999998874433
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=216.97 Aligned_cols=280 Identities=19% Similarity=0.272 Sum_probs=234.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
.+..|..+|++++. +|+.+++++|+.|..-.+|++.++.....+..|.. .|+++.|+.+|.+|++| .
T Consensus 59 tF~~H~~svFavsl-------~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSL-------HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ehhhcCCceEEEEe-------CCCCceEEecCCCceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEecCC
Confidence 34457789999998 66788999999999999999999998888888876 99999999999999976 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+|.|+||+..++....... ..-..+.=+.|+| ...+|+.|+.||.+.+|.+.++...+.+.+|..++++=.
T Consensus 127 sG~v~v~~~stg~~~~~~~--------~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLD--------QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred CccEEEEEcccCceEEEee--------cccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 9999999998864433221 2234578899999 788999999999999999999888899999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ- 351 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 351 (430)
|.|+|+.++++. .||+|++|++.++.+.. .+. ........++.++..+..++.|+.++.+++-+..+|+.+....
T Consensus 198 f~pdGKr~~tgy-~dgti~~Wn~ktg~p~~-~~~--~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 198 FIPDGKRILTGY-DDGTIIVWNPKTGQPLH-KIT--QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ccCCCceEEEEe-cCceEEEEecCCCceeE-Eec--ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 999999999999 99999999999985443 332 1224556778888899999999999999999999998877666
Q ss_pred -------cccCC---eeEEEEcCCCcEEEEeeCCceeeecCCCc-----------------------cccccCCCcEEEE
Q 014125 352 -------AAADT---VNGFSFHPFLPMAASSSGHRRFPVDDFED-----------------------LHLSGDENCVSVW 398 (430)
Q Consensus 352 -------~~~~~---v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-----------------------l~~~~~d~~i~~w 398 (430)
.+... |..+.|+..-++.|+|+.||+|.|||... |+++..+|.||.|
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQW 353 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEee
Confidence 34443 45555666778999999999999996543 8899999999999
Q ss_pred eecccccccccCCCCcceeee
Q 014125 399 SFLYASMMENADGINGCEFNC 419 (430)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~ 419 (430)
|.++++++....||.. ++.+
T Consensus 354 DaRtG~l~~~y~GH~~-~Il~ 373 (399)
T KOG0296|consen 354 DARTGQLKFTYTGHQM-GILD 373 (399)
T ss_pred eccccceEEEEecCch-heeE
Confidence 9999999999999987 4443
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=239.56 Aligned_cols=302 Identities=14% Similarity=0.141 Sum_probs=206.7
Q ss_pred ecc-cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~-~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
... +|.+.|.++.||+||+|||+||.||.|+||.+....... ..... .............+..+.-.+. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~------~~~~~~~~~~~s~~~p~~s~~~--~ 331 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGD------SSCMYFEYNANSQIEPSTSSEE--K 331 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccc------cchhhhhhhhccccCccccccc--c
Confidence 444 999999999999999999999999999999986522200 00000 0000000000000000000000 0
Q ss_pred cCCCCceEEEEeCCCcEEEEecc----CCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDAT----TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
........-.+.....+ +.+.. ..++++.+.+|.. .|..+.|+.++-+|.++.|.+|++|++.... .+.
T Consensus 332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~-----DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-CL~ 404 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTA-----DILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-CLK 404 (712)
T ss_pred ccccccccccccCCccc-cCCCccccccccchhhhhccch-----hheecccccCCeeEeccccccEEeecCCCcc-eee
Confidence 00000011112222221 11111 2345666666655 9999999988877778899999999997631 111
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
...|...|+|++|+|-+.++|++|+-||.|+||++...+.+.-... ..-|++++|.|+|++.++|+ .+|.
T Consensus 405 --------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt-~~G~ 474 (712)
T KOG0283|consen 405 --------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGT-FNGY 474 (712)
T ss_pred --------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEE-eccE
Confidence 1468889999999999999999999999999999988777655553 47899999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecc-----cCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccC--CeeEEE
Q 014125 290 ILCWDLRKAVQVVYKLYRS-----SEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAAD--TVNGFS 361 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~ 361 (430)
+++|+....+......... ..+. .|+.+.|.|.. ..|++.+.|.+|+|+|.++..++..|+++.. .-....
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeee
Confidence 9999998764332221111 1233 79999999854 3477778999999999999999999997655 345678
Q ss_pred EcCCCcEEEEeeCCceeeecCC
Q 014125 362 FHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 362 ~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|+.+|++|++++.|..|+||+.
T Consensus 554 fs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 554 FSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred EccCCCEEEEeecCceEEEEeC
Confidence 9999999999998777777764
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.3e-33 Score=223.83 Aligned_cols=258 Identities=18% Similarity=0.273 Sum_probs=208.1
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
...|+|+.+ |...+++|..|.+|++||..+-.+...+.+|.+ .|.|+.| +.+.|++| .|.+|+
T Consensus 197 skgVYClQY---------DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-----SVLCLqy--d~rviisGSSDsTvr 260 (499)
T KOG0281|consen 197 SKGVYCLQY---------DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-----SVLCLQY--DERVIVSGSSDSTVR 260 (499)
T ss_pred CCceEEEEe---------cchhhhcccccCceEEeccccHHHHHhhhcCCC-----cEEeeec--cceEEEecCCCceEE
Confidence 468999999 777999999999999999999888888888776 8999988 45577755 899999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccCeEEEEEc
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~ 274 (430)
+||++++ .....+.+|...|..+.|+. +++++++.|.++.+||+.... ....+.+|...|+.+.|
T Consensus 261 vWDv~tg--------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf- 328 (499)
T KOG0281|consen 261 VWDVNTG--------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 328 (499)
T ss_pred EEeccCC--------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-
Confidence 9999984 23334467888999999964 499999999999999998764 34567799999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
+.+++++++ .|.+|++|++.+.... ....+|...|.|+.+ .|+++++|+.|.+|++||+..|.++..+++|+
T Consensus 329 -d~kyIVsAS-gDRTikvW~~st~efv----Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 329 -DDKYIVSAS-GDRTIKVWSTSTCEFV----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred -ccceEEEec-CCceEEEEeccceeee----hhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 456999998 9999999999887432 233789999988877 48999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCCc----------cc-cccCCCcEEEEeecccccccccCCCCc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFED----------LH-LSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~----------l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.-|.++.|. .+.+++|+.||.++|||... +. ..-...+=|++.+.+++..-....|.+
T Consensus 401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHdd 469 (499)
T KOG0281|consen 401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDD 469 (499)
T ss_pred Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCC
Confidence 999999995 67888888888888886543 11 111233446777776666655555554
No 68
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4e-30 Score=232.26 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=207.8
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
-..|+....++|+..+++++.+.....|+...+..+...... ...........+|.+.|.+++|+|. +++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~----G~~~~~~~~l~GH~~~V~~v~fsP~------d~~ 89 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDY----GKLASNPPILLGQEGPIIDVAFNPF------DPQ 89 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeecccc----ccCCCCCceEeCCCCCEEEEEEcCC------CCC
Confidence 344667777888888888898888889987655322111110 0001112345678899999999442 678
Q ss_pred eEEEEeCCCcEEEEeccCCc-------eeeeeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 140 VFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++|+.|++|++||+.++. .+..+..|. ..|.+++|+|++ .+|+ ++.|+.|++||+..+.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~----- 159 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK----- 159 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----
Confidence 99999999999999997653 334455444 389999999986 5666 5689999999998642
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC-eEEEEEccCCCEEEEEec---C
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGGR---K 286 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---~ 286 (430)
....+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++. .
T Consensus 160 ---~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 160 ---AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred ---EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 1222356788899999999 6779999999999999999999998888888764 456789998888887652 4
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHP 364 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~ 364 (430)
|+.|++||+++......... ......+....|++++.+|++|+ .|+.|++||+.+++++..... +..++.+++|.|
T Consensus 236 Dr~VklWDlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCeEEEEeCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 79999999987654432221 12334566678999999998887 599999999999988766543 445788888888
Q ss_pred CC
Q 014125 365 FL 366 (430)
Q Consensus 365 ~~ 366 (430)
..
T Consensus 314 k~ 315 (493)
T PTZ00421 314 KW 315 (493)
T ss_pred cc
Confidence 53
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-29 Score=192.08 Aligned_cols=306 Identities=19% Similarity=0.194 Sum_probs=222.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
..+.++. -+..|++++|+|.|.+.|.|+...+.+|.-...-... ...++..............+|.+.|+|.+|
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--r~~hea~~~pp~v~~kr~khhkgsiyc~~w--- 97 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--RHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--- 97 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCc--ccccccccCCCeEEeeeccccCccEEEEEe---
Confidence 3344443 3567999999999999999999999999866532111 122222222223333345678899999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC----CcEEEEE--cCCeEEEEEcCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKIFAG--YNKSVRVFDVHRP 204 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~--~d~~i~v~d~~~~ 204 (430)
+|+|.++++|+.|.+|++.......+...-....-..|.+.|..++|-.+ +.+|+++ .|..|++-|..++
T Consensus 98 ----s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 98 ----SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred ----cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 78999999999999999987655433221111111123348999999644 3556643 5777777777663
Q ss_pred CCcccccccccCCCCCCCcceEEE-EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--c-----ccCeEEEEEccC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAI-AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--Q-----EGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~-----~~~i~~~~~~~~ 276 (430)
. ....+.+|.+.|.++ .| ++.++++|+.|.+|++||++-..++..+.. | ...|.+++..|.
T Consensus 174 ~--------~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 174 Q--------GFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred C--------cceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 2 222346888888776 34 566999999999999999998877766542 2 247999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----Ceeccccc
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQA 352 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~ 352 (430)
|++|+++- .|....+||++.+... .....|...|.++.|+|...|+++++.|..|++-|+... -++.....
T Consensus 243 grll~sg~-~dssc~lydirg~r~i----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 243 GRLLASGH-ADSSCMLYDIRGGRMI----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred cceeeecc-CCCceEEEEeeCCcee----eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999998 9999999999988533 233689999999999999999999999999999998732 22344457
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
|.+.+..+.|+|..--+++.+.|.+..+|.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEec
Confidence 889999999999888777777665555553
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=216.86 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=209.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCce---eeeeecccccccccceEEEEECCCCcEEE-
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF- 189 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 189 (430)
....|...|+-+.| |++|++||+++.|.+..+|++..... ..++.+|.. +|..+.|+||.++++
T Consensus 219 il~~htdEVWfl~F-------S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQF-------SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLA 286 (519)
T ss_pred hHhhCCCcEEEEEE-------cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEe
Confidence 44567889999999 88999999999999999999876544 444444443 999999999999988
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCe
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGV 268 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i 268 (430)
||.+..+.+||+.++... .....++...+.+++|.| ++..+++|+.|+++..||+. +......++-. ..|
T Consensus 287 Cg~~e~~~lwDv~tgd~~-------~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLR-------HLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKV 357 (519)
T ss_pred cCchHheeeccCCcchhh-------hhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhccccccccee
Confidence 568888999999885321 111233567899999999 56689999999999999997 44444444332 468
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
.+++..+||+++++.+ .|..|++|+..+..... ......+|++++.|.+++++++--.+..+++||+...+.+.
T Consensus 358 ~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVT-VDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR 431 (519)
T ss_pred EEEEEcCCCcEEEEEe-cccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence 9999999999999999 99999999987753321 12345789999999999999999999999999999999999
Q ss_pred ccccccCC--eeEEEEcC-CCcEEEEeeCCceeeecCCCc--------------------------cccccCCCcEEEEe
Q 014125 349 GFQAAADT--VNGFSFHP-FLPMAASSSGHRRFPVDDFED--------------------------LHLSGDENCVSVWS 399 (430)
Q Consensus 349 ~~~~~~~~--v~~~~~~~-~~~~l~s~~~d~~~~vw~~~~--------------------------l~~~~~d~~i~~w~ 399 (430)
.+.||... +..-+|-- +..++++|+.|+.|+||+... ++++|+||+||||.
T Consensus 432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 99999874 44445543 457999999999999995433 88999999999997
Q ss_pred eccc
Q 014125 400 FLYA 403 (430)
Q Consensus 400 ~~~~ 403 (430)
....
T Consensus 512 ~~~~ 515 (519)
T KOG0293|consen 512 PSDN 515 (519)
T ss_pred CCcc
Confidence 6543
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.5e-30 Score=233.73 Aligned_cols=286 Identities=18% Similarity=0.319 Sum_probs=226.2
Q ss_pred eccc-CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSI-PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~-h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+.+ |...+.+..|. +.++++++.|++|++|+..++... .....+|.+.|+++++
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i----------------~~~l~GH~g~V~~l~~------ 257 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI----------------LTRLVGHFGGVWGLAF------ 257 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEE----------------EeeccCCCCCceeEEE------
Confidence 3343 56778899998 468999999999999999876432 2225567799999998
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
...+.+|++|+.|.++++||+.+|++...+..|.. .+.++... ...+++ +.|.+|++|++..+
T Consensus 258 -~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-----tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~-------- 321 (537)
T KOG0274|consen 258 -PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-----SVRCLTID--PFLLVSGSRDNTVKVWDVTNG-------- 321 (537)
T ss_pred -ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc-----eEEEEEcc--CceEeeccCCceEEEEeccCc--------
Confidence 33478999999999999999999999999998776 77777653 334554 59999999999863
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.....+.+|.++|.++..+ +.++++|+.|++|++||..+++++..+.+|.+.|.++.+.+. ..+++|+ .|+.|++
T Consensus 322 ~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~Ikv 396 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKV 396 (537)
T ss_pred ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEe
Confidence 2233335699999999996 569999999999999999999999999999999999988665 7899999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcCCCcEEEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s 371 (430)
||+++.... .....+|..-+..+.+ .+++|++++.|+.|++||..++++++.+.+ |...|..+++. ...+++
T Consensus 397 Wdl~~~~~c---~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~ 469 (537)
T KOG0274|consen 397 WDLRTKRKC---IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC 469 (537)
T ss_pred ecCCchhhh---hhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE
Confidence 999987322 2233567777755554 478999999999999999999999999998 67888888876 345555
Q ss_pred eeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 372 SSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 372 ~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
++ .|+.+++||+..+.+...+
T Consensus 470 s~-----------------~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 470 SS-----------------DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred Ee-----------------cCCeeEEEecccCchhhhh
Confidence 55 4556666666655555433
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=3.2e-30 Score=213.07 Aligned_cols=281 Identities=20% Similarity=0.259 Sum_probs=231.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..++++...|..+.++||+.|..+.++|.+.++.+..+.+ |...|..+.+ +++...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-----------------h~kki~~v~~-------~~~~~~ 275 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-----------------HTKKITSVKF-------HKDLDT 275 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-----------------cceEEEEEEe-------ccchhh
Confidence 4578888888878999999999999999998776554444 4578999999 667888
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++++.|..|+||.............|.. +|+.+..+|.|.+|+ ++.|++..+.|++++..... ... .
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~-----~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~----vs~--~ 344 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEE-----PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV----VSD--E 344 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccc-----cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE----Eee--c
Confidence 99999999999999988777666666665 999999999999999 56899999999987532111 110 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
...-.+++.+|+| ++.+|.+|..||.|++||+.++..+..|.+|.++|..++|+.+|-+|++++ .|+.|++||+|..+
T Consensus 345 ~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 345 TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLK 422 (506)
T ss_pred cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhc
Confidence 2334589999999 778999999999999999999999999999999999999999999999999 99999999999875
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC--CCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ--TGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
...... ......+.++.|++.|.+|+.++.|=+|++++-. .+..+..+..|.+..+++.|....+++++++.|..
T Consensus 423 n~kt~~---l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 423 NFKTIQ---LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred ccceee---ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 432221 1223378999999999999999887666666633 56778888889989999999999999999998877
Q ss_pred eeec
Q 014125 378 FPVD 381 (430)
Q Consensus 378 ~~vw 381 (430)
++++
T Consensus 500 l~~~ 503 (506)
T KOG0289|consen 500 LRLY 503 (506)
T ss_pred eEEe
Confidence 7665
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=3.2e-30 Score=236.38 Aligned_cols=292 Identities=15% Similarity=0.162 Sum_probs=224.9
Q ss_pred CCceeEEEECcCCceEEEec--CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
...|.+|+.+|||..+|||+ .||.++||+.+.-......... ...........|.+.|.|+.| ++|
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~-----~l~k~l~~m~~h~~sv~CVR~-------S~d 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE-----NLPKHLCTMDDHDGSVNCVRF-------SPD 80 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc-----ccchhheeeccccCceeEEEE-------CCC
Confidence 44689999999999999999 8999999997632111100000 012334456678899999999 889
Q ss_pred CceEEEEeCCCcEEEEeccC-------C-----------ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEE
Q 014125 138 SCVFASTTRDHPIHLWDATT-------G-----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~-------~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v 198 (430)
|.+||+|+.|+.|.+|+... + +....+..|.. .|..++|+|++.+++ ++.|++|.+
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEE
Confidence 99999999999999999873 0 23444555444 899999999999999 569999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc------cCeEEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------GGVTHVQ 272 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~------~~i~~~~ 272 (430)
|+..+- .....+.+|.+.|..+.|.| -+++||+=+.|++|++|+..+....+.+..+. ..+..+.
T Consensus 156 wn~~tF--------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTF--------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccc--------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 998762 34445689999999999999 77899999999999999988777666665443 3578899
Q ss_pred EccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-------------CC----EEEEEcc
Q 014125 273 FSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-------------GR----HLGTGGQ 332 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~ 332 (430)
|||||++|++..... .++.|.+-.+-+.. ....+|..++.++.|+|. .. .+|+|+.
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~----~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVD----KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCCceee----eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 999999999876433 35667665443222 222589999999999982 11 6889999
Q ss_pred CCcEEEEEcCCCCeecccc-cccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 333 DGLVHIYDLQTGKWISGFQ-AAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
|++|.||.....+++.... -....|.+++|+|||..|+++|.||.|.+.
T Consensus 303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999998888877654 345689999999999999999976555554
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.6e-30 Score=222.45 Aligned_cols=271 Identities=15% Similarity=0.223 Sum_probs=218.7
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
=++|+. .+.||.|.. ..|++|+..++... ....+. ...|+++.| +++|.+|++|
T Consensus 182 lldWss-~n~laValg-~~vylW~~~s~~v~----------------~l~~~~-~~~vtSv~w-------s~~G~~LavG 235 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVALG-QSVYLWSASSGSVT----------------ELCSFG-EELVTSVKW-------SPDGSHLAVG 235 (484)
T ss_pred Hhhccc-CCeEEEEec-ceEEEEecCCCceE----------------EeEecC-CCceEEEEE-------CCCCCEEEEe
Confidence 367773 457777664 47999998876421 111122 578999999 7799999999
Q ss_pred eCCCcEEEEeccCCceeeeeec-ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCC
Q 014125 145 TRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA 222 (430)
Q Consensus 145 ~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 222 (430)
..+|.|.|||..+.+.+..+.. |.. .|-+++|+ +..+.+| .++.|..+|++....... ...+|.
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~~~~h~~-----rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~ 301 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTLRGSHAS-----RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHR 301 (484)
T ss_pred ecCCeEEEEehhhccccccccCCcCc-----eeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhccc
Confidence 9999999999999988888877 443 88999997 4555554 899999999987543222 257899
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-EEEEEe-cCCCeEEEEeCCCCce
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGG-RKDPYILCWDLRKAVQ 300 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~d~~i~i~d~~~~~~ 300 (430)
..|..++|++ ++.++|+|+.|+.+.|||....++...+..|...|.+++|+|... .||+|+ ..|+.|++||..++..
T Consensus 302 qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 302 QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 9999999999 778999999999999999988899999999999999999999655 555544 3799999999998754
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEE--ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTG--GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
.. . ....+.|..+.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...|..++++|+|..+++|+.|.++
T Consensus 381 i~-~----vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 381 ID-S----VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred ec-c----cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 32 1 3467889999999988666654 346789999999999999999999999999999999999999865444
Q ss_pred eec
Q 014125 379 PVD 381 (430)
Q Consensus 379 ~vw 381 (430)
++|
T Consensus 456 rfw 458 (484)
T KOG0305|consen 456 RFW 458 (484)
T ss_pred Eec
Confidence 444
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=6.8e-30 Score=203.17 Aligned_cols=291 Identities=13% Similarity=0.204 Sum_probs=203.2
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
-...++.+|.+.|++++|+.||++|||++.|++|+||++++... ..+. ..-..+... .-+.+.|
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr------~~R~nve~d---hpT~V~F--- 140 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR------CIRQNVEYD---HPTRVVF--- 140 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh------HhhccccCC---CceEEEE---
Confidence 34568999999999999999999999999999999999986322 1111 111112222 2344556
Q ss_pred cCccCCCCceEE-EEeCCCcEEEEeccCCc---eeeeeeccc----ccccccceEEEEECCCCcEEE-EEcCCeEEEEEc
Q 014125 131 MSASDPTSCVFA-STTRDHPIHLWDATTGL---LRCTYRAYD----AVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 131 ~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~---~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~ 201 (430)
+||-+-++ ++-...++++|.+...+ ....+.... ...|...+..+-....+.+|+ ++.|..|.+|++
T Consensus 141 ----apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l 216 (420)
T KOG2096|consen 141 ----APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL 216 (420)
T ss_pred ----CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence 55655444 44455679999875432 111111111 112334566677777788888 568999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---Cc-----eeeEEeeccccCeEEEEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NM-----ELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~~-----~~~~~~~~~~~~i~~~~~ 273 (430)
.. ..+. ........-+..+.+| +++++++++..-.|++|..- .| ..+..+++|...|..++|
T Consensus 217 kG--q~L~-------~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 217 KG--QLLQ-------SIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CC--ceee-------eeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 73 2221 1223334456789999 77899999999999999852 22 345678899999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCce------EEEEe-ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQ------VVYKL-YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
+|+...+++.+ .||++++||..-... .+... .......+....++++|+|+.||.+. ...++++..++++.
T Consensus 287 sn~S~r~vtvS-kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 287 SNSSTRAVTVS-KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD 364 (420)
T ss_pred CCCcceeEEEe-cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc
Confidence 99999999999 999999999753211 00000 00122334445899999999888664 45799999999988
Q ss_pred ecccc-cccCCeeEEEEcCCCcEEEEee
Q 014125 347 ISGFQ-AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 347 ~~~~~-~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.-.+. .|...|.+|+|+++|+++++++
T Consensus 365 ~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred chhHHHhhcCceeeEEecCCCcEEeeec
Confidence 77664 6889999999999999999997
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.5e-29 Score=199.74 Aligned_cols=282 Identities=17% Similarity=0.239 Sum_probs=214.6
Q ss_pred cceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+.+.+.....+.|.+|+||| ...+++.+|-||+||+|++.... .........+.++|.+++|
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------------~~~~ka~~~~~~PvL~v~W-- 80 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------------QLVPKAQQSHDGPVLDVCW-- 80 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCC---------------cccchhhhccCCCeEEEEE--
Confidence 44556677889999999999 55677789999999999998531 1222344567789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc--EEEEE-cCCeEEEEEcCCCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~-~d~~i~v~d~~~~~~ 206 (430)
+.||..+++|+.|+.+++||+.+++. ..+..|.. +|..+.|-+... .|++| .|++|+.||++...+
T Consensus 81 -----sddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 81 -----SDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDA-----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred -----ccCCceEEeeccCCceEEEEccCCCe-eeeeeccc-----ceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 88999999999999999999999954 45566655 899999987665 67755 999999999987432
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-e-eccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-L-HGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
... ..-...+.++..- ..+++++..+..|.+|+++.+..... . ....-.+.|++..++....+.|+
T Consensus 150 v~t---------~~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 150 VAT---------LQLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred eee---------eeccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 211 1122446666653 34899999999999999976543221 1 12234688999999888888888
Q ss_pred cCCCeEEEEeCCCCce---EEEEeecccC----CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 285 RKDPYILCWDLRKAVQ---VVYKLYRSSE----HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~---~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
-+|.+.+..+..+.. ...+..+... .--.|++++|+|.-..|++++.||++.+||-+....++..+.|..+|
T Consensus 218 -iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 218 -IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI 296 (347)
T ss_pred -ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence 999999998887522 2222222111 12357889999998999999999999999999888888989999999
Q ss_pred eEEEEcCCCcEEEEee
Q 014125 358 NGFSFHPFLPMAASSS 373 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~ 373 (430)
++..|+.+|.++|-+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 9999999999887664
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=1.8e-30 Score=215.96 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=201.8
Q ss_pred ccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee----------eeecccccccccceEEE
Q 014125 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC----------TYRAYDAVDEITAAFSV 179 (430)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~~~v~~~ 179 (430)
......+.|.+.|..+.+.|+ +..++++.+..+.|.|||..+-.... .+.+|.. .-+++
T Consensus 115 v~i~~~i~h~gEVnRaRymPQ------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-----eg~gl 183 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQ------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-----EGYGL 183 (422)
T ss_pred eEEEEeccCCccchhhhhCCC------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-----ccccc
Confidence 344556788899999999886 45688899999999999986532211 3344433 46789
Q ss_pred EECCCC--cEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cc
Q 014125 180 AFNPTG--TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NM 255 (430)
Q Consensus 180 ~~~~~~--~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~ 255 (430)
+|++.. .++.++.|+.|++||+....... ........+.+|...|..++|+|.+..+|++++.|+.+.|||+| +.
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKED-KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCC-ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 999865 34446699999999998754431 12334455689999999999999999999999999999999999 56
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCC
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDG 334 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 334 (430)
++.....+|.+.|.|++|+|.+.+|+++++.|++|++||+|+..... ....+|...|..+.|+|.. ..||+++.|+
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l---h~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL---HTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc---eeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 67778889999999999999877666555589999999999886644 4447899999999999975 6789999999
Q ss_pred cEEEEEcCCC--------------CeecccccccCCeeEEEEcCCCcE-EEEeeCCceeeecCCC
Q 014125 335 LVHIYDLQTG--------------KWISGFQAAADTVNGFSFHPFLPM-AASSSGHRRFPVDDFE 384 (430)
Q Consensus 335 ~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~~~vw~~~ 384 (430)
++.|||+..- +++..-.||...|..+.|+|..++ +++.+.|+.+.||...
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999742 234555689999999999999884 4555555555555443
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.3e-30 Score=207.48 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=190.4
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc----EEEEE
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT----KIFAG 191 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~ 191 (430)
+.|...|.++.- .+..+++|+.||.+++||. .|+...++.+|.. +|.+++|.-.+. ++.++
T Consensus 102 ~~hdDWVSsv~~---------~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 102 FLHDDWVSSVKG---------ASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ccchhhhhhhcc---------cCceEEEeecCCeeEEEec-CCceEEEEecCCc-----ceeeeEEEecCCccceEEEec
Confidence 345556666543 3679999999999999997 5777888887776 888777743332 44477
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC------------------
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------ 253 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~------------------ 253 (430)
.|.++++|.++.+........ ...+|...|.++...+ ++..+++|+.|.+|.+|+..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~----~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALK----VCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred CCceEEEEEecCchhhhhHHh----HhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 999999999987654333222 2249999999999999 77799999999999999922
Q ss_pred -------CceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE
Q 014125 254 -------NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH 326 (430)
Q Consensus 254 -------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 326 (430)
+..++..+.+|..+|.++.|++ ...+++++ .|.+|+.||+.++...... .....+++++.+|..++
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S-wDHTIk~WDletg~~~~~~-----~~~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS-WDHTIKVWDLETGGLKSTL-----TTNKSLNCISYSPLSKL 314 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC-CCceEeec-ccceEEEEEeecccceeee-----ecCcceeEeecccccce
Confidence 1135667889999999999988 56788888 9999999999998654322 24567899999999999
Q ss_pred EEEEccCCcEEEEEcCCCC---eecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCC
Q 014125 327 LGTGGQDGLVHIYDLQTGK---WISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~ 384 (430)
|++|+.|..|++||.+++. ...++.+|.+.|.++.|+|... .|++++.|+++++||..
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 9999999999999998763 3567889999999999999766 67777777777777543
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3.8e-30 Score=217.11 Aligned_cols=293 Identities=18% Similarity=0.184 Sum_probs=209.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee-eeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
...++...|.++++ .|.|..|++|+.|.+|++||+...... ..++... ......|.++.|++.+..|+ ++
T Consensus 162 ~l~hgtk~Vsal~~-------Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 162 QLKHGTKIVSALAV-------DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred eccCCceEEEEeee-------cCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEe
Confidence 34456678899998 778999999999999999998754221 1122111 11223889999999998777 56
Q ss_pred cCCeEEEEEcCCCCCc----ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEee----
Q 014125 192 YNKSVRVFDVHRPGRD----FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLH---- 262 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~---- 262 (430)
.....+++|-...... ...+..-.....+|...++|.+|+|.....+++++.||++++||+...+ ....+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 7888999986531100 0011112234478999999999999999999999999999999988654 233332
Q ss_pred -ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 263 -GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 263 -~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
+..-+++.++|+|+|+.|++++ .||.|.+|+........ .+.....|.. .|+++.||++|++|++-+.|+++++|
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCcccCceeeecCCCcchhhhcc-cCCceeeeecCCccccc-ceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 2234789999999999999999 99999999986542221 1112245555 89999999999999999999999999
Q ss_pred EcCCC-Ceeccccccc--CCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcce
Q 014125 340 DLQTG-KWISGFQAAA--DTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCE 416 (430)
Q Consensus 340 d~~~~-~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 416 (430)
|++.. +++.+..+-. -+-+.++|+|+.++|++|+. +.-+...|++.+++-.+-+.+..+.--.. .
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS-----------~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-S 459 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS-----------APNGMTAGTLFFFDRMTLDTVYKIDISTA-S 459 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEeccc-----------ccCCCCCceEEEEeccceeeEEEecCCCc-e
Confidence 99964 4555554432 25688999999999999964 22223455777777776666655554333 3
Q ss_pred eeeeccCccCCC
Q 014125 417 FNCQSEHENLNQ 428 (430)
Q Consensus 417 ~~~~~~~~~~~~ 428 (430)
+.....|+.|||
T Consensus 460 vv~~~WhpkLNQ 471 (641)
T KOG0772|consen 460 VVRCLWHPKLNQ 471 (641)
T ss_pred EEEEeecchhhh
Confidence 344488888888
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=5.7e-29 Score=197.16 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=211.0
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
....+.|.++.|+|.++.|+.++.||++++|++.... ....+.|+.++.+.+|.+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------------------l~~~~~~~~plL~c~F~d------- 64 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------------------LKLKFKHGAPLLDCAFAD------- 64 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh------------------hhhheecCCceeeeeccC-------
Confidence 3457789999999999999999999999999998653 235667889999999943
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
...+++|+.||.|+.+|+.++..... ..|.. ++.++.+++....++ +|+|++|++||.+.... .
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~-----~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--------~ 129 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNEDQI-GTHDE-----GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--------V 129 (323)
T ss_pred -CceEEEeccCceEEEEEecCCcceee-ccCCC-----ceEEEEeeccCCeEEEcccCccEEEEecccccc--------c
Confidence 56799999999999999998865433 33333 899999997655555 66999999999985211 1
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
.. ......|.++.. .++.|++|+.+..|.+||+++........ ...-.+.++++.|++.-.++++ -||.|.+=
T Consensus 130 ~~-~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE 204 (323)
T KOG1036|consen 130 GT-FDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVE 204 (323)
T ss_pred cc-cccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEE
Confidence 11 112236888888 45589999999999999999875443221 2335689999999888888888 89999886
Q ss_pred eCCCCceEEEEeecccCC---------ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 294 DLRKAVQVVYKLYRSSEH---------TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.++.......+.+.+..| --+|++++|+|--..++||+.||.|.+||+.+.+.+..+......|..++|+.
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 665542211111211222 24788999999988999999999999999999999999988888899999999
Q ss_pred CCcEEEEeeC
Q 014125 365 FLPMAASSSG 374 (430)
Q Consensus 365 ~~~~l~s~~~ 374 (430)
+|.+||.++.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999999974
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=220.15 Aligned_cols=296 Identities=19% Similarity=0.266 Sum_probs=224.8
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc-----cCCC
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA-----SDPT 137 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~ 137 (430)
.-++.|+|....|.+.-.|..++|||+.+.+.+ ......+.|...|+++.-.|.... .-|.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv--------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV--------------GKCSSMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccc--------------cceeeeeeccceeeeeccccccccCcccccCCc
Confidence 346889999999999999999999999865432 222344556778888877663221 1222
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeec-------------c-------------------cccccccceEEEEECCCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRA-------------Y-------------------DAVDEITAAFSVAFNPTG 185 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------~-------------------~~~~~~~~v~~~~~~~~~ 185 (430)
..|++++.|++|++|++..+..-..+.. . ...+....+.+++.+|++
T Consensus 393 -~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 393 -GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred -cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 3499999999999999976321111000 0 000123468899999999
Q ss_pred cEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCc-eeeEEe
Q 014125 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNM-ELLYVL 261 (430)
Q Consensus 186 ~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~-~~~~~~ 261 (430)
++|++| ..|+++||++.. .........|...|.|+.|+.. +..+||+++.|.-|++||.... .++.++
T Consensus 472 qhLAsGDr~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred ceecccCccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 999988 789999999976 2333445789999999999853 3568999999999999997533 344455
Q ss_pred eccccCeEE-------------------------------------------------EEEccCCCEEEEEecCCCeEEE
Q 014125 262 HGQEGGVTH-------------------------------------------------VQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 262 ~~~~~~i~~-------------------------------------------------~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.+|...|++ ++..|..+++++++ .|..|+|
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-QDrniri 622 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-QDRNIRI 622 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-cccceEE
Confidence 555555554 44445557888888 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||+.++++. +.+.....|.+....+...|.|-||++...|.++.++|..+++++..+.+|...|+++.|.+|-+.|++.
T Consensus 623 f~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 623 FDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred Eecccccee-eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence 999998554 3455556788888999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
++||-|.||..
T Consensus 702 sgDgCIFvW~l 712 (1080)
T KOG1408|consen 702 SGDGCIFVWKL 712 (1080)
T ss_pred cCCceEEEEEC
Confidence 88777777744
No 82
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4.6e-29 Score=217.83 Aligned_cols=282 Identities=14% Similarity=0.178 Sum_probs=226.6
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee-eeec
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD-FCWF 128 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ 128 (430)
++..+.+.||+..|..+++.+.. .++++|.||++++|+-..++... ......+.+-|.. ++|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~---------------~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE---------------THAFEGPKGFIANSICYA 67 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc---------------ceecccCcceeeccceec
Confidence 45667899999999999987654 89999999999999876543221 1122223344444 6764
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
+ .++-.+++|+.|..|.+|.+....+...+..|.. .|.++....++.++.++.|.++++|-+..
T Consensus 68 e------~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~~iSgSWD~TakvW~~~~----- 131 (745)
T KOG0301|consen 68 E------SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS-----NVCSLSIGEDGTLISGSWDSTAKVWRIGE----- 131 (745)
T ss_pred c------ccCcceEeecccceEEEEecCCCCchhhhhcccc-----ceeeeecCCcCceEecccccceEEecchh-----
Confidence 3 2556799999999999999999999999998887 89999988888855567999999998753
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
+.....+|+..|.+++.-|. . .+++|+.|.+|++|.- ++.++++.+|..-|..+++-+++. +++++ .||
T Consensus 132 -----l~~~l~gH~asVWAv~~l~e-~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg 200 (745)
T KOG0301|consen 132 -----LVYSLQGHTASVWAVASLPE-N-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDG 200 (745)
T ss_pred -----hhcccCCcchheeeeeecCC-C-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCc
Confidence 33346899999999999984 3 8999999999999976 788899999999999999998765 66777 899
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
.|++|++... .. .+..+|.+.+.+++..+++..++++++|++++||+.. ++.+.+.-..-.|+++.+-++|.
T Consensus 201 ~Ir~w~~~ge-~l----~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD- 272 (745)
T KOG0301|consen 201 SIRLWDLDGE-VL----LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD- 272 (745)
T ss_pred eEEEEeccCc-ee----eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-
Confidence 9999999543 22 3337899999999988888999999999999999977 77777775555899999888776
Q ss_pred EEEeeCCceeeecC
Q 014125 369 AASSSGHRRFPVDD 382 (430)
Q Consensus 369 l~s~~~d~~~~vw~ 382 (430)
+++|++||.|+||.
T Consensus 273 Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 273 IVVGGSDGRVRVFT 286 (745)
T ss_pred EEEeccCceEEEEE
Confidence 45666677777773
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=219.06 Aligned_cols=324 Identities=15% Similarity=0.231 Sum_probs=232.6
Q ss_pred cCCCcee---EEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 58 IPNNFLK---GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 58 ~h~~~v~---~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.|...|. .+..++ .++||+|||.||.|++|++.......... -....-.|...|.++..
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-----------~~asme~HsDWVNDiiL------ 81 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-----------YIASMEHHSDWVNDIIL------ 81 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-----------hhhhhhhhHhHHhhHHh------
Confidence 3444455 555554 67789999999999999987543211100 11122346667777766
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEE-CCCCcEEE-EEcCCeEEEEEcCCCCCc-c
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAF-NPTGTKIF-AGYNKSVRVFDVHRPGRD-F 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~-~~~d~~i~v~d~~~~~~~-~ 208 (430)
-.+++.|+++|.|-+|++|+...+ -+..++..|.. .|.|+++ .++...++ +|-|+.|.+||++.+... .
T Consensus 82 -~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D-----YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 82 -CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD-----YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred -hcCCCceEEecCCceEEEeecccCcchhHhhhhcccc-----hheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 446789999999999999999887 45666666655 8999999 66777777 458999999999875321 1
Q ss_pred cccc--cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 209 EKYS--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 209 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
..+. +......++...|++++.++ .+..++.|+..+.+++||.++.+.+..+++|...|..+..++||..+++++ .
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-S 233 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-S 233 (735)
T ss_pred hhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-C
Confidence 1111 11111237888999999999 667999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
||+|++||+........ ...|...++++..+|+-.++.+|+.||.|+.=|+++......+-....+|..+..+...
T Consensus 234 DgtIrlWdLgqQrCl~T----~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~ 309 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLAT----YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD 309 (735)
T ss_pred CceEEeeeccccceeee----EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc
Confidence 99999999998755543 24678889999999999999999999999999998742211111122233333333222
Q ss_pred cEEEEeeCCceeeec-------------------------------------------------CCCccccccCCCcEEE
Q 014125 367 PMAASSSGHRRFPVD-------------------------------------------------DFEDLHLSGDENCVSV 397 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw-------------------------------------------------~~~~l~~~~~d~~i~~ 397 (430)
+-+-+++.|+.|+-| |...++|-...|.+.+
T Consensus 310 ~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~l 389 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVAL 389 (735)
T ss_pred CCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEE
Confidence 222333334444444 2223667778899999
Q ss_pred EeecccccccccC
Q 014125 398 WSFLYASMMENAD 410 (430)
Q Consensus 398 w~~~~~~~~~~~~ 410 (430)
||+-....++.+.
T Consensus 390 wDIl~~~~~~d~g 402 (735)
T KOG0308|consen 390 WDILACVKVEDFG 402 (735)
T ss_pred EEeeeeeehhhcc
Confidence 9998777766655
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.8e-29 Score=208.98 Aligned_cols=265 Identities=17% Similarity=0.315 Sum_probs=203.9
Q ss_pred eecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.....|.+.|+.+++-|. ...+|+.+..+.|.|||..+......... .........+|...-++++|++.
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-------~~~Pdl~L~gH~~eg~glsWn~~-- 188 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-------ECRPDLRLKGHEKEGYGLSWNRQ-- 188 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------cCCCceEEEeecccccccccccc--
Confidence 344579999999999995 45777888899999999976433221110 11222345556666888999764
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCce-------eeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCC
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHR 203 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~ 203 (430)
....|++++.|+.|++||+..... ...+..|. ..|..++|++-...++ ++.|+.+.|||+++
T Consensus 189 ----~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 189 ----QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ----cceeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----cceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 345799999999999999976433 23344444 4899999999876665 56999999999996
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
. . ........+|...+.|++|+|.+..+||+|+.|++|.+||+|+. +++..+.+|...|.++.|+|+...+++
T Consensus 260 ~-~-----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 260 N-T-----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred C-C-----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 2 1 23444557899999999999999999999999999999999985 578899999999999999998765554
Q ss_pred EecCCCeEEEEeCCCCce----------EEEEeecccCCccceEEEEEcCCCCE-EEEEccCCcEEEEEcC
Q 014125 283 GGRKDPYILCWDLRKAVQ----------VVYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~ 342 (430)
+++.|+.+.+||+..-.. +...++...+|...|..+.|+|+..+ |++.++|+.+.||++.
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 444999999999964322 22234566899999999999998765 7888999999999986
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-29 Score=216.07 Aligned_cols=243 Identities=21% Similarity=0.358 Sum_probs=202.8
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
+.+.|+++.|+++|++||+|..+|.|.|||..+.+.... +..+|...|-+++| .+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~----------------~~~~h~~rvg~laW---------~~ 270 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT----------------LRGSHASRVGSLAW---------NS 270 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc----------------ccCCcCceeEEEec---------cC
Confidence 378899999999999999999999999999987644322 23336789999999 36
Q ss_pred ceEEEEeCCCcEEEEeccCCceeee-eecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
..+.+|+.|+.|..+|+...+.... +..|.. .|..++|++|+.++++| .|+.+.|||.... ....
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--------~p~~ 337 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--------EPKF 337 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCCccceEeccCCCc--------cccE
Confidence 6899999999999999988765554 444444 99999999999999955 9999999999552 3334
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE-ecCCCeEEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG-GRKDPYILCW 293 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~d~~i~i~ 293 (430)
.+..|...|.+++|+|....+||+|+ .|+.|++||..++..+..+. ....|.+|.|++..+.|+++ |..++.|.||
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 45788999999999999899999965 59999999999999988876 45789999999998766654 4467899999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
+..+.... ....+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 417 ~~ps~~~~----~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 417 KYPSMKLV----AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecccccee----eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99885433 333689999999999999999999999999999998764
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-28 Score=193.02 Aligned_cols=241 Identities=13% Similarity=0.196 Sum_probs=193.5
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE--cCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNK 194 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~ 194 (430)
....|.++.| +++|..+++++.|.++++||..+++.+.++..... .+..++|......++ ++ .|.
T Consensus 13 ~~~~i~sl~f-------s~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDF-------SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEe-------cCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----cccEEEEecCCceEEEccCCCCC
Confidence 3478999999 78999999999999999999999999988877655 666777766655555 44 589
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
+|+..++... .....+.||...|.+++.+| .+..+++++.|++|++||++..++...+... .-..++|+
T Consensus 81 tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfD 149 (311)
T KOG1446|consen 81 TIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFD 149 (311)
T ss_pred ceEEEEeecC--------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeEC
Confidence 9999999873 34445689999999999999 6689999999999999999988777666533 33567999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
|.|-++|++. ..+.|++||++....-....+.. .......+.+.|||+|++|+.++..+.+++.|.-+|..+..+.++
T Consensus 150 p~GLifA~~~-~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 150 PEGLIFALAN-GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred CCCcEEEEec-CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 9999998888 66699999999763332222222 255677889999999999999999999999999999999888877
Q ss_pred cCCe---eEEEEcCCCcEEEEeeCCceeeecC
Q 014125 354 ADTV---NGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 354 ~~~v---~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
...- .+..|.|+++++++|+.||++.+|+
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 6532 5778999999999998654444443
No 87
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-29 Score=217.30 Aligned_cols=306 Identities=16% Similarity=0.219 Sum_probs=228.3
Q ss_pred ccCCCCCcceeee--cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceee
Q 014125 38 RFDVPPHRTYHFY--NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115 (430)
Q Consensus 38 ~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (430)
.-.+|..+.++|| .+...+.||++.|++|+..|.|.+||+|+.||+|+||.+.++.++...
T Consensus 376 iPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----------------- 438 (733)
T KOG0650|consen 376 IPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----------------- 438 (733)
T ss_pred cccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-----------------
Confidence 3445666666666 466789999999999999999999999999999999999988654332
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee---------e-------------eeec-------
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR---------C-------------TYRA------- 166 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~-------------~~~~------- 166 (430)
...+.|.+++|+| .++-..||++-... +.+.+..-|..+ . .+..
T Consensus 439 -~~d~~I~~vaw~P-----~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~ 511 (733)
T KOG0650|consen 439 -QFDSEIRSVAWNP-----LSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELE 511 (733)
T ss_pred -eecceeEEEEecC-----CCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhc
Confidence 2335899999988 44455566554444 555543322100 0 0000
Q ss_pred ---ccccccccceEEEEECCCCcEEEEE----cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEE
Q 014125 167 ---YDAVDEITAAFSVAFNPTGTKIFAG----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (430)
Q Consensus 167 ---~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 239 (430)
.....+...|..+.|+..|.+|++. ....|.|.++.... .+..+....+.+.++.|+| ...+|+
T Consensus 512 ~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--------sQ~PF~kskG~vq~v~FHP-s~p~lf 582 (733)
T KOG0650|consen 512 KGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--------SQSPFRKSKGLVQRVKFHP-SKPYLF 582 (733)
T ss_pred cceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--------ccCchhhcCCceeEEEecC-CCceEE
Confidence 0111234578899999999999942 34679999987632 2222344456799999999 555666
Q ss_pred EecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEE
Q 014125 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFD 319 (430)
Q Consensus 240 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 319 (430)
+++ ...|++||+.....++.+......|..++.+|.|..|++++ .|+.+..||+.-...+...+ ..|...+++++
T Consensus 583 VaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldlsskPyk~l---r~H~~avr~Va 657 (733)
T KOG0650|consen 583 VAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSKPYKTL---RLHEKAVRSVA 657 (733)
T ss_pred EEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccCcchhHHh---hhhhhhhhhhh
Confidence 555 47899999998888887776777899999999999999999 99999999998775554333 57889999999
Q ss_pred EcCCCCEEEEEccCCcEEEEEcC------C---CCeecccccccCC----eeEEEEcCCCcEEEEeeCCceeeec
Q 014125 320 IEPSGRHLGTGGQDGLVHIYDLQ------T---GKWISGFQAAADT----VNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~i~vwd~~------~---~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
|++.-.++++|+.||.+.|+.-. . --+++.+++|... |....|||...+|++++.||++++|
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99998999999999999998632 1 1246778888765 8999999999999999987776665
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=199.12 Aligned_cols=294 Identities=15% Similarity=0.191 Sum_probs=227.1
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
.+...+.+.||.+.|+.++-......+.+++.|.+.+||.++++.++.... +|.+.|.++.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-----------------GH~GSVNsikf- 198 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-----------------GHTGSVNSIKF- 198 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-----------------ccccceeeEEe-
Confidence 456778999999999999998877899999999999999999887654443 45589999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEec------cCC--------c-ee--------------------eeeecccccccc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDA------TTG--------L-LR--------------------CTYRAYDAVDEI 173 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~------~~~--------~-~~--------------------~~~~~~~~~~~~ 173 (430)
++.+.++++++.|++..||.. ... + .. ...+...-.+|.
T Consensus 199 ------h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~ 272 (481)
T KOG0300|consen 199 ------HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR 272 (481)
T ss_pred ------ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc
Confidence 667899999999999999972 110 0 00 000000111234
Q ss_pred cceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 174 TAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 174 ~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
..|.+..|-..|+.++ ++.|.+..+||++++ .+...+.+|....+.++-+| ..+++++++.|.+.++||+
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg--------e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETG--------EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccC--------ceeccccCcchhccccccCC-cceEEEEeccCceeEeccc
Confidence 4677888888888888 569999999999884 44455689999999999999 8889999999999999999
Q ss_pred CCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+.. ..+..|++|...|+++.|..+.+ +++++ .|.+|++||+++...++..+ ...++++.++.+..+..|+.--
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgS-DDrTvKvWdLrNMRsplATI----RtdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGS-DDRTVKVWDLRNMRSPLATI----RTDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred hhhcceeeeecccccceeEEEEecCCc-eeecC-CCceEEEeeeccccCcceee----ecCCccceeEeecCCceEEecc
Confidence 854 45778999999999999987664 77888 99999999999887665554 3456788899998888899888
Q ss_pred cCCcEEEEEcCCCCeec----ccccccCCeeEEEEcCCCc--EEEEeeCCceeeec
Q 014125 332 QDGLVHIYDLQTGKWIS----GFQAAADTVNGFSFHPFLP--MAASSSGHRRFPVD 381 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~~~vw 381 (430)
.+..|++||++..++.. .-++|...|++++|..+-. -|++++.|..+.-|
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 88899999998544322 3357888999999975443 34445444433333
No 89
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2e-28 Score=213.78 Aligned_cols=346 Identities=13% Similarity=0.211 Sum_probs=255.6
Q ss_pred eecceeecccCCCceeEEEECcCCc---eEEEecCCCeEEEEeCCCCCCcc----cccccccccc----c------Cccc
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGS---SFLTSSEDKTLRIFSLPENGISY----DVNACSLAKD----Q------DSYE 111 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~~~----~------~~~~ 111 (430)
.|.....+.||.+.|.+++|...+. +||++|.|..||||.+.-+.... +......... . .-..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4566788999999999999987443 89999999999999985443211 0000000000 0 0001
Q ss_pred ceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEE
Q 014125 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (430)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (430)
..+..+|...|+++.| +|.+..|++++.|.++.+|...+. -.+...+.....+.....++..|+|++..++
T Consensus 260 eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred hhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 1244589999999999 567888999999999999998765 3333333332222233578899999998888
Q ss_pred E-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc----eeeEEeecc
Q 014125 190 A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQ 264 (430)
Q Consensus 190 ~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~ 264 (430)
+ |..|..++|....+ ..-.......+|...|+.++|+| .+.+|++.+.|.+-++|-.-.. ..+..-+-|
T Consensus 333 ~~g~~Gg~hlWkt~d~-----~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDK-----TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EecccCcEEEEeccCc-----cceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccc
Confidence 5 68999999983221 11234445689999999999999 6779999999999999865421 233444568
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC-------------------------------------------Cce-
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK-------------------------------------------AVQ- 300 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~-------------------------------------------~~~- 300 (430)
...++|++|-+....+++++ ....+|+|+... +..
T Consensus 407 GyDl~c~~~vn~~~~FVSgA-dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGA-DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred cccceeeehccCCceeeecc-cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 88999999988666677777 889999997521 000
Q ss_pred ---EEE-------------------------EeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCee
Q 014125 301 ---VVY-------------------------KLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKWI 347 (430)
Q Consensus 301 ---~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~ 347 (430)
... ...+..+|...|.+++.+|+|+++|+++... .|++|+..+...+
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 000 0011236888999999999999999998653 4999999999999
Q ss_pred cccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC-----------------------------CccccccCCCcEEEE
Q 014125 348 SGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF-----------------------------EDLHLSGDENCVSVW 398 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~-----------------------------~~l~~~~~d~~i~~w 398 (430)
+.+.+|.-.|+.++|+||+++|++.+.|+++.+|.. ..++|++.|.+|++|
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 999999999999999999999999999999999922 128999999999999
Q ss_pred eeccc--ccccc
Q 014125 399 SFLYA--SMMEN 408 (430)
Q Consensus 399 ~~~~~--~~~~~ 408 (430)
..... +.+..
T Consensus 646 ~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 646 EEPDLRDKYISR 657 (764)
T ss_pred eccCchhhhhhh
Confidence 99876 55544
No 90
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8e-28 Score=217.37 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=175.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeec--------ccccccccceEEEEECC-CCcEEE-EEcCCeEEEEEcCCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRA--------YDAVDEITAAFSVAFNP-TGTKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~ 204 (430)
++++..+++++.+.....|+...+..+..+.. ....+|...|.+++|+| ++.+|+ ++.|++|++||+...
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 34656677777777777777554432211110 00123445899999999 777787 559999999999764
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+.... .......+.+|...|.+++|+|.+.++|++|+.|++|++||+++++....+..|...|.+++|+|+|.+|++++
T Consensus 109 ~~~~~-~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 109 GLTQN-ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred ccccc-cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec
Confidence 32110 11122335688999999999997678999999999999999999999989999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccc-eEEEEEcCCCCEEEEEc----cCCcEEEEEcCCCC-eeccccccc-CCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQ-RILFDIEPSGRHLGTGG----QDGLVHIYDLQTGK-WISGFQAAA-DTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~~~~~~~~-~~v 357 (430)
.|+.|++||++++.... .+ ..|... ...+.|.+++..+++++ .|+.|++||+++.. ++.....+. ..+
T Consensus 188 -~Dg~IrIwD~rsg~~v~-tl---~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 188 -KDKKLNIIDPRDGTIVS-SV---EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262 (493)
T ss_pred -CCCEEEEEECCCCcEEE-EE---ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence 99999999999875432 22 345443 45678899887777654 47899999998754 333333232 356
Q ss_pred eEEEEcCCCcEEEEee-CCceeeecCC
Q 014125 358 NGFSFHPFLPMAASSS-GHRRFPVDDF 383 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~-~d~~~~vw~~ 383 (430)
....|++++++|++++ .|+.|++|+.
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 6678999999998887 3666666654
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=181.40 Aligned_cols=262 Identities=18% Similarity=0.270 Sum_probs=200.1
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC------Cceee----eeecccccccccceEEEE
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT------GLLRC----TYRAYDAVDEITAAFSVA 180 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~----~~~~~~~~~~~~~v~~~~ 180 (430)
+....+.....|++++| .|.|.+.++|+...++++-.... +.... .........|.+.|+|.+
T Consensus 24 ~~i~~l~dsqairav~f-------hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAF-------HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecchhheeeEEe-------cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 33444556678999999 66899999999999998875432 11000 111111223456999999
Q ss_pred ECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC---CCceEEEec-CCCeEEEEEcCCc
Q 014125 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGS-YSQTSAIYREDNM 255 (430)
Q Consensus 181 ~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~v~~~d~~~~ 255 (430)
|+|.|++|++| .|++|++.-++...... .-....+..|.+.|..++|..+ ++.+|++++ .|..|++-|-..+
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~---~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNA---TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccc---cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 99999999966 89999998776532211 1223345678899999999653 355666654 4778888899999
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC---CccceEEEEEcCCCCEEEEEcc
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE---HTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
+....+.+|.+-|.++- +-+|-.+++++ .|.+|++||++-+......-..... ..+.|.+++..|.|++|++|-.
T Consensus 174 ~~~~a~sghtghilaly-swn~~m~~sgs-qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALY-SWNGAMFASGS-QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred CcceeecCCcccEEEEE-EecCcEEEccC-CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 99999999999998763 34677788888 9999999999977554332222222 2467999999999999999999
Q ss_pred CCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 333 DGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
|....+||++.++.++.+..|...|.++.|+|...++.+++.|..|++-|+.
T Consensus 252 dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 9999999999999999999999999999999999999999999999998654
No 92
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-27 Score=217.58 Aligned_cols=230 Identities=10% Similarity=0.119 Sum_probs=170.5
Q ss_pred EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
.|+.++.|++|+......+..+..|.. .|.+++|+|+ +.+|+ ++.|+.|++||+...+............+.+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~-----~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTS-----SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCC-----CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 466788999999887777777776655 9999999997 67777 5589999999997643211111111223467
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
|...|.+++|+|++..++++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++ .|+.|++||++++..
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEI 201 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcE
Confidence 889999999999766678899999999999999998777776 567899999999999999988 899999999998754
Q ss_pred EEEEeecccCCccce-----EEEEEcCCCCEEEEEccCC----cEEEEEcCC-CCeecccccc--cCCeeEEEEcCCCcE
Q 014125 301 VVYKLYRSSEHTNQR-----ILFDIEPSGRHLGTGGQDG----LVHIYDLQT-GKWISGFQAA--ADTVNGFSFHPFLPM 368 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~ 368 (430)
. ..+ .+|.+.+ ....|++++.+|++++.|+ .|+|||+++ .+++..+..+ .+.+......+++.+
T Consensus 202 i-~tl---~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 202 A-SSF---HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI 277 (568)
T ss_pred E-EEE---ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence 3 232 3555443 2334568889999888774 699999995 5566554322 233333444556888
Q ss_pred EEEeeCCceeeecCC
Q 014125 369 AASSSGHRRFPVDDF 383 (430)
Q Consensus 369 l~s~~~d~~~~vw~~ 383 (430)
+++|+.|+.+++|+.
T Consensus 278 ~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 278 YLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEECCCeEEEEEc
Confidence 888887776666654
No 93
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=9.7e-28 Score=217.69 Aligned_cols=249 Identities=18% Similarity=0.302 Sum_probs=180.5
Q ss_pred ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC
Q 014125 78 SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (430)
Q Consensus 78 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 157 (430)
|+.++.|++|+..... ......+|...|.+++|+|. ++.+|++|+.||+|++||+.+
T Consensus 50 GG~~gvI~L~~~~r~~-----------------~v~~L~gH~~~V~~lafsP~------~~~lLASgS~DgtIrIWDi~t 106 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------PVIKLKGHTSSILDLQFNPC------FSEILASGSEDLTIRVWEIPH 106 (568)
T ss_pred CCceeEEEeeecCCCc-----------------eEEEEcCCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCC
Confidence 5667888888875321 12234467789999999442 367999999999999999986
Q ss_pred Cce--------eeeeecccccccccceEEEEECCCCcEE-E-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 158 GLL--------RCTYRAYDAVDEITAAFSVAFNPTGTKI-F-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 158 ~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
+.. ...+..|. ..|.+++|+|++..+ + ++.|+.|++||++.+.... .+ .+...|.+
T Consensus 107 ~~~~~~~i~~p~~~L~gH~-----~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----~i-----~~~~~V~S 172 (568)
T PTZ00420 107 NDESVKEIKDPQCILKGHK-----KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF----QI-----NMPKKLSS 172 (568)
T ss_pred CCccccccccceEEeecCC-----CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE----EE-----ecCCcEEE
Confidence 421 22333333 489999999998765 4 4589999999998743211 11 13457999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE-----EEEccCCCEEEEEecCCC----eEEEEeCCCC
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH-----VQFSRDGNYLYTGGRKDP----YILCWDLRKA 298 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~~d~----~i~i~d~~~~ 298 (430)
++|+| ++.+|++++.|+.|++||+++++.+..+.+|.+.+.+ ..|++++.+|++++ .|+ .|++||++..
T Consensus 173 lswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG-~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 173 LKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG-FSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE-cCCCCccEEEEEECCCC
Confidence 99999 6678999999999999999999999999999876543 33568889999988 553 7999999965
Q ss_pred ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccccccCCeeEEEEcCCCc
Q 014125 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~ 367 (430)
..+.... ....+.+.+......++|.++++|+.|+.|++|++..+.. +..+. +..++.+++|.|...
T Consensus 251 ~~pl~~~-~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 251 TSALVTM-SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CCceEEE-EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 4443332 2233344444444456689999999999999999987643 22222 556889999999643
No 94
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.2e-28 Score=217.79 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=221.2
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+|....+.|+|.|+|++|++++.||.|++|+...... .+.....++..|.+++-
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e----------------~P~ti~~~g~~v~~ia~--------- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE----------------EPETIDISGELVSSIAC--------- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc----------------CCchhhccCceeEEEee---------
Confidence 57899999999999999999999999999998764311 01111115678888765
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+++|++|+.+++|.+|...+++.-..+..... ++.+++++.+|+++++| .|-.|++.++... ...
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~ 131 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQE 131 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeec-----cceEEEEecCCcEEEeecCceeEEEEecccc--------chh
Confidence 566999999999999999998876544444433 88899999999999955 8889999998773 334
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc--------ccCeEEEEEccCCCEEEEEecCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--------EGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
..+.+|..+|.++.|+| .+++||+.+.||.|++||+.++.....+.+- ...+..++|+|+|..+++.+ .|
T Consensus 132 ~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d 209 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VD 209 (933)
T ss_pred eeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cC
Confidence 45689999999999999 7889999999999999999988766554421 34577899999988888888 89
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
+.|++|+..+.... ..+. ...+...+..++|+|+|+|||+++.||.|.|||.++.+. ......|.+++|.|+.+
T Consensus 210 ~~Vkvy~r~~we~~-f~Lr-~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQ-FKLR-DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred CeEEEEccCCceeh-eeec-ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 99999998877433 2332 234455599999999999999999999999999998322 23345899999999999
Q ss_pred EEEEeeCCceeeec
Q 014125 368 MAASSSGHRRFPVD 381 (430)
Q Consensus 368 ~l~s~~~d~~~~vw 381 (430)
.+-.-...|...+|
T Consensus 284 ~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 284 AITLITALGTLGVS 297 (933)
T ss_pred eeEEEeeccccccC
Confidence 77777777777666
No 95
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=6.7e-28 Score=210.53 Aligned_cols=305 Identities=18% Similarity=0.280 Sum_probs=226.9
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeee----cCCCeeeeeeecc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV----TEGESVYDFCWFP 129 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~ 129 (430)
..+.||.+.|+++.|+|.+..|+++|.|.++.+|...+..-+ ......+ +....-+...|
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi--------------Wv~~vRlGe~gg~a~GF~g~lw-- 324 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI--------------WVDVVRLGEVGGSAGGFWGGLW-- 324 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccce--------------EEEEEEeecccccccceeeEEE--
Confidence 456799999999999999999999999999999987653110 0011111 22234777788
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
+|+++.+++-+..|-.++|....... .. ......+|...|..++|+|.|++|+ +|.|-+-|+|---.....+
T Consensus 325 -----~~n~~~ii~~g~~Gg~hlWkt~d~~~-w~-~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w 397 (764)
T KOG1063|consen 325 -----SPNSNVIIAHGRTGGFHLWKTKDKTF-WT-QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW 397 (764)
T ss_pred -----cCCCCEEEEecccCcEEEEeccCccc-ee-eccccccccccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence 66788999999999999999332211 11 1112224556999999999999888 6678776665332000000
Q ss_pred c-------------------------------------------------------------------------------
Q 014125 209 E------------------------------------------------------------------------------- 209 (430)
Q Consensus 209 ~------------------------------------------------------------------------------- 209 (430)
.
T Consensus 398 HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~ 477 (764)
T KOG1063|consen 398 HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG 477 (764)
T ss_pred eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence 0
Q ss_pred -----------------------------------ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----eEEE
Q 014125 210 -----------------------------------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAI 249 (430)
Q Consensus 210 -----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~~ 249 (430)
..-+-...+.+|...|.+++.+| .++++|+++... .|++
T Consensus 478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEE
Confidence 00000112367888999999999 788999987653 5899
Q ss_pred EEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE
Q 014125 250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT 329 (430)
Q Consensus 250 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 329 (430)
|+..+....+.+..|.-.|+.++|||||++|++.+ .|.++.+|...........+.....|..-|+++.|+|++.+++|
T Consensus 557 w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 557 WNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred EeccchhhhheecccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence 99999988889999999999999999999999999 99999999986654443333345789999999999999999999
Q ss_pred EccCCcEEEEEcCCC--Ceecc--cccccCCeeEEEEcCC-----CcEEEEeeCCceeeecCC
Q 014125 330 GGQDGLVHIYDLQTG--KWISG--FQAAADTVNGFSFHPF-----LPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~--~~~~~--~~~~~~~v~~~~~~~~-----~~~l~s~~~d~~~~vw~~ 383 (430)
+|.|..|+||..... +.+.. ...+..+|+.++|.|- +..++.|-..|.|.+|..
T Consensus 636 aSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 636 ASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred ecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999877 43333 2347789999999872 337788888999999953
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-27 Score=185.77 Aligned_cols=263 Identities=15% Similarity=0.221 Sum_probs=218.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
...+|..+++.+.| +.+|.+|.+++.|.+..||-..+|+.+.++.+|.. .|+++..+-+.+.+++| .
T Consensus 5 ~l~GHERplTqiKy-------N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-----avW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKY-------NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-----AVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccccCccccceEEe-------cCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-----eEEEEEecCCcceeeeccc
Confidence 34567889999999 77999999999999999999999999999998887 99999999999999965 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----CCeEEEEEcC-------CceeeEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQTSAIYRED-------NMELLYV 260 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~~~d~~-------~~~~~~~ 260 (430)
|.++++||+.++.... . -....+|..+.|++ ++++++.... .+.|.++|++ ..++...
T Consensus 73 D~t~kLWDv~tGk~la----~-----~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLA----T-----WKTNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeEEEEcCCCcEEE----E-----eecCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 9999999998853321 1 12245799999999 5556655543 4679999988 4456778
Q ss_pred eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 261 ~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
+..+...++.+-|.|-+++|++|. .||.|.+||++++...+... ..|...|+.++++|+..++++++.|.+-++||
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGH-EDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred ecCCccceeeeeecccCCEEEEec-CCCcEEEEEcccCceeeech---hhhccccccccccCCcceEEecccCccceeee
Confidence 888889999999999999999999 99999999999986655433 56888999999999999999999999999999
Q ss_pred cCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec---------------------------------------
Q 014125 341 LQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD--------------------------------------- 381 (430)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw--------------------------------------- 381 (430)
..+-+.++++. ...||++.+++|....++.++.....-|-
T Consensus 219 ~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 219 VRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred ccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 99999999887 45699999999988888877665444332
Q ss_pred CCCccccccCCCcEEEEeeccc
Q 014125 382 DFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 382 ~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
+....+++|+||.||+.-|...
T Consensus 298 dGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCcccccCCCCceEEEEEeccc
Confidence 2333788888999988876643
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=6.7e-28 Score=189.89 Aligned_cols=301 Identities=17% Similarity=0.254 Sum_probs=219.7
Q ss_pred ecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+...|.+.|+++...+ .|+|+++|+.||.|.+||++.......... . ....-.........|.-.|.++.|.|.
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i-~k~~c~v~~~h~~~Hky~iss~~WyP~--- 112 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-I-AKHKCIVAKQHENGHKYAISSAIWYPI--- 112 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-e-eheeeeccccCCccceeeeeeeEEeee---
Confidence 4468999999999998 799999999999999999975432111000 0 000000111223345668999999986
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC---cEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
|...|.+++.|.+++|||..+-+....|+... .|++-+++|-. .++++| .+-.|++.|+..+
T Consensus 113 ---DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----- 178 (397)
T KOG4283|consen 113 ---DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----- 178 (397)
T ss_pred ---cCceeecccccceEEEeecccceeeEEeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC-----
Confidence 66689999999999999999988877776654 78888888854 355666 7889999999874
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEE--------------eeccccCeEEEEEc
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYV--------------LHGQEGGVTHVQFS 274 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~--------------~~~~~~~i~~~~~~ 274 (430)
.....+.+|...|.++.|+|.....|++|+.||.|++||++.. .+... -..|.+.+..++|.
T Consensus 179 ---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 ---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred ---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 4455568999999999999988889999999999999998754 22222 23577889999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCcc----ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTN----QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.++.++++.+ .|..+++|+..++......... ..|.. .+. +. +.+...++---.++.+.++++-++..+..+
T Consensus 256 Sd~~~l~~~g-td~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 256 SDARYLASCG-TDDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred ccchhhhhcc-CccceEEeecccCccccccccc-ccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee
Confidence 9999999999 9999999999887654332211 11111 111 22 222233333345588999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
..|...|.+.++.|+-+...++..|+.+.-|
T Consensus 332 ~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 332 STHLKRINCAAYRPDFEQCFTGDMNGNIYMW 362 (397)
T ss_pred ecccceeeEEeecCchhhhhccccCCccccc
Confidence 9998899999999977666666654444444
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-28 Score=204.39 Aligned_cols=240 Identities=24% Similarity=0.319 Sum_probs=197.9
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
...|.+++|+|. +|. -+|+.+.- .+.+|+..+......+..... .++++.|-.||+++++| ..|.|+
T Consensus 26 ~~~vssl~fsp~----~P~--d~aVt~S~-rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~sG~V~ 93 (487)
T KOG0310|consen 26 HNSVSSLCFSPK----HPY--DFAVTSSV-RVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDESGHVK 93 (487)
T ss_pred cCcceeEecCCC----CCC--ceEEeccc-EEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCCcCcEE
Confidence 368999999775 232 35555444 499999888777666655554 89999999999999987 789999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+||+.+ ..+...+.+|+.++..+.|+|++..++++|+.|+.+++||+.+......+.+|+..|.+.+|+|-.
T Consensus 94 vfD~k~--------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 94 VFDMKS--------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred Eecccc--------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC
Confidence 999654 233344578999999999999999999999999999999999988777899999999999999976
Q ss_pred C-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-CeecccccccC
Q 014125 278 N-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAAD 355 (430)
Q Consensus 278 ~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~ 355 (430)
. .+++|+ .||.|++||++........ ..|..+|..+.+-|.|..+++++. +.|+|||+.+| +.+..+..|..
T Consensus 166 ~hivvtGs-YDg~vrl~DtR~~~~~v~e----lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 166 DHIVVTGS-YDGKVRLWDTRSLTSRVVE----LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred CeEEEecC-CCceEEEEEeccCCceeEE----ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc
Confidence 6 555555 9999999999987544333 368899999999999999999876 46999999965 45555556999
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
.|+|+.+..++..|++++-|+.++|++..
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEcc
Confidence 99999999999999999999999999643
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.5e-28 Score=192.79 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=191.2
Q ss_pred CcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC----ceeeeeec-----c----ccccccc
Q 014125 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRA-----Y----DAVDEIT 174 (430)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~-----~----~~~~~~~ 174 (430)
..++......|..++++.+| ++||.++++|+.|-.|++.|++.. +....... | .-.+|..
T Consensus 101 ~~yEt~ylt~HK~~cR~aaf-------s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAF-------SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred cccceEEEeecccceeeeee-------CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC
Confidence 35566677788899999999 889999999999999999998721 11100000 0 1123556
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
+|.++.|+|....|++| .|++|++||+...... +.+.. .....+|.++.|+| ++.++++|....++++||++
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-rA~K~-----~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-RAFKV-----FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHH-HHHHH-----hhccceeeeEeecC-CCceEEEecCCCceeEEecc
Confidence 99999999999999965 9999999999763211 11111 12345799999999 78899999999999999999
Q ss_pred CceeeEEe---eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 254 NMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 254 ~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+.++...- ..|.+.|+++.+++.++..++++ .||.|++||--+++... .+.. ......|.+..|..+|+|+++.
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv~-t~~~-AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCVR-TIGN-AHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHHHH-HHHh-hcCCceeeeEEEccCCeEEeec
Confidence 98875543 36889999999999999988888 99999999977664432 2221 2235678999999999999999
Q ss_pred ccCCcEEEEEcCCCCeeccccccc--C---CeeEEEEcCCCcEEEEeeC-CceeeecCC
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAA--D---TVNGFSFHPFLPMAASSSG-HRRFPVDDF 383 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~l~s~~~-d~~~~vw~~ 383 (430)
+.|..+++|.+.+++.+..+.+-. + --+...|+....+++.-.. .+.++-||.
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence 999999999999999988876431 1 1233455555555544332 455666643
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8.1e-29 Score=197.73 Aligned_cols=277 Identities=15% Similarity=0.203 Sum_probs=219.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc---cccccceEEEEECCCCcEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAFNPTGTKIFA 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 190 (430)
..++....+.|..| +|||++|++|+.||.|.+|+..+|+....++.... ..+..+|.|+.|+.|...+++
T Consensus 208 IKFg~KSh~EcA~F-------SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 208 IKFGQKSHVECARF-------SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred eecccccchhheee-------CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc
Confidence 34455556666666 88999999999999999999999987766554321 123458999999999999996
Q ss_pred E-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 191 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
| .||.|++|.+.++. .+......|...|+|+.|+. ++..+++++.|.++++.-+.+|++++.+++|...|+
T Consensus 281 GsqDGkIKvWri~tG~-------ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQ-------CLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cCcCCcEEEEEEecch-------HHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 6 89999999998852 23333357888999999999 556888999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeec
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
...|.++|..+++++ .||+|++|+..+..... .+...+...+|+++-.-|.. ..++++...++|+|.++. |+.++
T Consensus 353 ~a~ft~dG~~iisaS-sDgtvkvW~~KtteC~~--Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVr 428 (508)
T KOG0275|consen 353 EATFTDDGHHIISAS-SDGTVKVWHGKTTECLS--TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVR 428 (508)
T ss_pred ceEEcCCCCeEEEec-CCccEEEecCcchhhhh--hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEe
Confidence 999999999999999 99999999998875542 23345566778888777754 678888899999999987 77777
Q ss_pred cccc---ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeeccCcc
Q 014125 349 GFQA---AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHEN 425 (430)
Q Consensus 349 ~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.+.. ..+...+...+|.|.++...+ +|+.++.+.+..+++...+.-|..-. --+..||-
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcig-----------------ED~vlYCF~~~sG~LE~tl~VhEkdv-IGl~HHPH 490 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIG-----------------EDGVLYCFSVLSGKLERTLPVHEKDV-IGLTHHPH 490 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEc-----------------cCcEEEEEEeecCceeeeeecccccc-cccccCcc
Confidence 7753 234566777899999888775 68888889988888887777665533 33355554
Q ss_pred CC
Q 014125 426 LN 427 (430)
Q Consensus 426 ~~ 427 (430)
.|
T Consensus 491 qN 492 (508)
T KOG0275|consen 491 QN 492 (508)
T ss_pred cc
Confidence 43
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=189.87 Aligned_cols=248 Identities=18% Similarity=0.313 Sum_probs=192.7
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..+..+..|.++|++++.+ |.++|+||.|-+|+|||+.+.... .....|.+.|+++.|.+
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~ 93 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYP 93 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecC
Confidence 34567889999999999996 699999999999999999875432 24455678999999966
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
.. ..+.|++|+.||.|.+|+...-..+..++.|.. .|+.++.+|.+++.+ +|.|+.++.||+-++...+
T Consensus 94 ~~-----S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 94 PL-----SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred Cc-----chhheeeecCCCcEEEEEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 42 223899999999999999999999999998887 899999999999877 7899999999997754322
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
... + ....+.+.|+|.+ ..++.+.. ..|-+|.+.+......+. ....+.++.|. ++..|++|+ .|+
T Consensus 164 v~~--L-------~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~-d~~ 229 (362)
T KOG0294|consen 164 VLN--L-------KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGG-DNE 229 (362)
T ss_pred eec--c-------CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEec-CCc
Confidence 111 1 1123449999954 45555543 568899888776655554 23457777775 566788898 899
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEE--cCCCCEEEEEccCCcEEEEEcCCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDI--EPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
.|++||....... ....+|.+.|..+.+ .|++.+|++++.||.|+|||++..
T Consensus 230 ~i~~~D~ds~~~~----~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPL----TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccc----eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999875332 333689999988874 567889999999999999999865
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=211.59 Aligned_cols=323 Identities=18% Similarity=0.167 Sum_probs=246.0
Q ss_pred cccccCCCCCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCccccee
Q 014125 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (430)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (430)
+...|++...+ .+.++.++.+.|+++.=+|--..+|.|..+|+|.|+++..++.. .
T Consensus 183 ~lql~Nvrt~K------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil------------------~ 238 (910)
T KOG1539|consen 183 RLQLWNVRTGK------VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL------------------M 238 (910)
T ss_pred cEEEEEeccCc------EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE------------------E
Confidence 44445544444 44578889999999999998899999999999999999876543 3
Q ss_pred eecC-CCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeee-cccccccccceEEEEECCCCcEEE-E
Q 014125 115 VVTE-GESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIF-A 190 (430)
Q Consensus 115 ~~~~-~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (430)
.+.+ .+.|+.++| ..||+ .+++|+..|.+.+||++..+.+.... .|.. .|....|-|....++ +
T Consensus 239 sFk~d~g~VtslSF-------rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~-----sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSF-------RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG-----SVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccccceeEEEe-------ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC-----CcccceecCCCceEeec
Confidence 3334 379999999 55664 57777788999999999887766655 3322 566666666666666 3
Q ss_pred EcCCeEEEEEcCCCCCccc-------------------------------------------------c-----------
Q 014125 191 GYNKSVRVFDVHRPGRDFE-------------------------------------------------K----------- 210 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~-------------------------------------------------~----------- 210 (430)
+.|+.+++|-.++++...+ .
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 4666666654432111000 0
Q ss_pred -c-------------------------------------------ccc------cCCCCCCCcceEEEEEcCCCCceEEE
Q 014125 211 -Y-------------------------------------------STL------KGNKEGQAGIMSAIAFSPTHTGMLAI 240 (430)
Q Consensus 211 -~-------------------------------------------~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~ 240 (430)
. ... ...+......+++++.++ .+++.+.
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~I 465 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFI 465 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEE
Confidence 0 000 000111235688899999 7889999
Q ss_pred ecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE
Q 014125 241 GSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL 317 (430)
Q Consensus 241 ~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 317 (430)
|...|.|-+|++.+|-....+ ..|.++|++++...-++.+++++ .+|.+.+||..... .... ..-...+..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~-l~~~----l~l~~~~~~ 539 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKV-LKKS----LRLGSSITG 539 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCcc-eeee----eccCCCcce
Confidence 999999999999999888777 58999999999998899999999 99999999998764 2222 234556777
Q ss_pred EEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc------------
Q 014125 318 FDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------ 385 (430)
Q Consensus 318 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------ 385 (430)
+..+.....++.+..|-.|+++|..+.+.++.|.+|.+.|++++|+|+|++|++++.|+.|++||...
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence 88888888999999999999999999999999999999999999999999999999999999997654
Q ss_pred ------------cccccCC-CcEEEEee
Q 014125 386 ------------LHLSGDE-NCVSVWSF 400 (430)
Q Consensus 386 ------------l~~~~~d-~~i~~w~~ 400 (430)
|+|+..| ..|++|.-
T Consensus 620 ~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6676666 78999954
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=188.40 Aligned_cols=274 Identities=15% Similarity=0.167 Sum_probs=205.9
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 153 (430)
.|+.|++...|.-+++.-.. ....... ...-........|..++++++. ++.++|+|+.|-+|+||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~~~~~s~----~~~l~~lF~~~aH~~sitavAV---------s~~~~aSGssDetI~IY 68 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-KGCTDSV----KPTLKPLFAFSAHAGSITALAV---------SGPYVASGSSDETIHIY 68 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-ccccccc----ceeeeccccccccccceeEEEe---------cceeEeccCCCCcEEEE
Confidence 36678887777666665322 0000000 0001112234457789999988 68899999999999999
Q ss_pred eccCCceeeeeecccccccccceEEEEECCCC---cEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
|+.+......+-.|.. .|+++.|.+.- .+|.++.||.|.+|+... -.+...+.+|.+.|+.++.
T Consensus 69 Dm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--------W~~~~slK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 69 DMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--------WELLKSLKAHKGQVTDLSI 135 (362)
T ss_pred eccchhhhcceecccc-----ceEEEEecCCcchhheeeecCCCcEEEEEcCC--------eEEeeeecccccccceeEe
Confidence 9999888877777665 99999999887 344466999999999865 3444556788889999999
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE 310 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 310 (430)
+| .+.+.++.+.|+.+++||+-.++.-..+. -....+.+.|+|.|.+++.++ ...|-+|.+.+.... ....
T Consensus 136 HP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~~i~ 206 (362)
T KOG0294|consen 136 HP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----REIE 206 (362)
T ss_pred cC-CCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----hhhh
Confidence 99 88899999999999999998887665554 223345599999999998887 567999998875321 1112
Q ss_pred CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE--cCCCcEEEEeeCCceeeecCCC
Q 014125 311 HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF--HPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 311 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
....+.++.|- ++..|++|++|+.|.+||.++..+...+.+|...|.++.+ .|++.+|+|++.||.|+|||.+
T Consensus 207 ~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 207 NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 23446666665 4678999999999999999999999999999999999985 4678899999987777777543
No 104
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=210.01 Aligned_cols=179 Identities=20% Similarity=0.339 Sum_probs=147.2
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc---CCCEEEEEecCCCeEEEEeCCCC
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR---DGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
...+++++.+| ++..||+|..-|++++|++..-+....+.+|+..|.|+.|+. ..++|++++ .|..|.+||+...
T Consensus 459 r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-rdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 459 RFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-RDRLIHVYDVKRN 536 (1080)
T ss_pred ccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-CCceEEEEecccc
Confidence 45699999999 777999999999999999999888888999999999999985 245777787 9999999998542
Q ss_pred ceEEEEe-------------------------------------------ec---ccCCccceEEEEEcCCCCEEEEEcc
Q 014125 299 VQVVYKL-------------------------------------------YR---SSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 299 ~~~~~~~-------------------------------------------~~---~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
..+...+ +. .......++.++..|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 2111000 00 0011345777888899999999999
Q ss_pred CCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCcEEEEeeCCceeeecCC-------------------------C
Q 014125 333 DGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLPMAASSSGHRRFPVDDF-------------------------E 384 (430)
Q Consensus 333 dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~-------------------------~ 384 (430)
|..|+|||+.+++..+.|++ |.+....+...|.|.||++++.|+++.++|. .
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 99999999999999999975 6677889999999999999999999999843 3
Q ss_pred ccccccCCCcEEEEeecc
Q 014125 385 DLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 385 ~l~~~~~d~~i~~w~~~~ 402 (430)
.|++.+.||+|.+|.+..
T Consensus 697 HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeecCCceEEEEECch
Confidence 389999999999999864
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-28 Score=186.83 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=201.8
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
++-..|++.|..+...-.|+.||||+.|++|+|+....+.. ........+|.++|+.++|..
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------s~ll~~L~Gh~GPVwqv~wah---- 66 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------SKLLAELTGHSGPVWKVAWAH---- 66 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------ceeeeEecCCCCCeeEEeecc----
Confidence 35678999999999999999999999999999999986532 123334567889999999943
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
-.-|.+||+++.||.|.||.-+.++..+. +....|...|++++|.|.+ ..|++ +.||.|.|.+.+..+.
T Consensus 67 -Pk~G~iLAScsYDgkVIiWke~~g~w~k~---~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---- 138 (299)
T KOG1332|consen 67 -PKFGTILASCSYDGKVIIWKEENGRWTKA---YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---- 138 (299)
T ss_pred -cccCcEeeEeecCceEEEEecCCCchhhh---hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC----
Confidence 23688999999999999999988854332 2223344589999999975 45554 4999999999987522
Q ss_pred cccccCCCCCCCcceEEEEEcCCC--C-----------ceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEcc
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH--T-----------GMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~--~-----------~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~ 275 (430)
.........|...|++++|.|.. + ..|++|+.|..|+||+..+++ ....+.+|.+.|+.++|.|
T Consensus 139 -w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 139 -WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred -ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 22333446788889999999841 1 469999999999999988753 4455889999999999999
Q ss_pred CC----CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 276 DG----NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 276 ~~----~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
.- .+|++++ .||++.||..+........ .........++.+.||+.|..|+.++.|+.|.+|.-+
T Consensus 218 ~~gl~~s~iAS~S-qDg~viIwt~~~e~e~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCS-QDGTVIIWTKDEEYEPWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEec-CCCcEEEEEecCccCcccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 64 4788888 9999999988744222211 1123466789999999999999999999999999865
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8e-29 Score=200.34 Aligned_cols=265 Identities=14% Similarity=0.190 Sum_probs=212.0
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCe
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 195 (430)
.+|...|.+++=+|..+ ..+++|+.||.|++||+.+..+...++.|.+ .|..+++.. +.++.+|.|++
T Consensus 63 ~gHrdGV~~lakhp~~l------s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-----~V~Gi~v~~-~~~~tvgdDKt 130 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKL------STVASGSCDGEVKIWNLSQRECIRTFKAHEG-----LVRGICVTQ-TSFFTVGDDKT 130 (433)
T ss_pred cccccccchhhcCcchh------hhhhccccCceEEEEehhhhhhhheeecccC-----ceeeEEecc-cceEEecCCcc
Confidence 45678899998866422 5799999999999999999999999998887 889999986 66777999999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
|+.|.+..+ +.. .+ ...+.+..+.-+. ....+++++ ..|.|||..-..++..+.--...|.++.|+|
T Consensus 131 vK~wk~~~~--p~~---ti-----lg~s~~~gIdh~~-~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 131 VKQWKIDGP--PLH---TI-----LGKSVYLGIDHHR-KNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eeeeeccCC--cce---ee-----ecccccccccccc-ccccccccC--ceeeecccccCCccceeecCCCceeEEecCC
Confidence 999998763 111 11 1123345555554 556777776 4699999998899999987778899999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-Ceeccccccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-KWISGFQAAA 354 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~ 354 (430)
....|+.++..|+.|.+||+++......... ...-+.++|+|.+-.+++|++|..++.||++.. +++....+|.
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVIL-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeee-----eccccceecCccccceeeccccccceehhhhhhcccchhhcccc
Confidence 8776665555999999999999865544332 233456999998878999999999999999864 5688889999
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC--------------------------CccccccCCCcEEEEeecccccccc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF--------------------------EDLHLSGDENCVSVWSFLYASMMEN 408 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~--------------------------~~l~~~~~d~~i~~w~~~~~~~~~~ 408 (430)
+.|.++.|+|.|+-+++||.|..|+|+.. ..++++++|+.||+|.-...+.+..
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 99999999999999999999999999833 2388999999999998877666655
Q ss_pred cC
Q 014125 409 AD 410 (430)
Q Consensus 409 ~~ 410 (430)
+.
T Consensus 353 ~t 354 (433)
T KOG0268|consen 353 IT 354 (433)
T ss_pred CC
Confidence 54
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=5.4e-28 Score=203.70 Aligned_cols=285 Identities=14% Similarity=0.192 Sum_probs=226.0
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|..-|.++..|...+.+.||+. |.|+|||+........... .-....+.-|+++.. .|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq------------Ldcl~rdnyiRSckL-------~p 475 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ------------LDCLNRDNYIRSCKL-------LP 475 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc------------ccccCcccceeeeEe-------cC
Confidence 478888999999999999999987 5799999975422111110 001122345666666 77
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
||+.|++|+.-.++.|||+.............. ....++++.+||.+..+ +..||.|.|||+.. ..+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltss---apaCyALa~spDakvcFsccsdGnI~vwDLhn--------q~~V 544 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS---APACYALAISPDAKVCFSCCSDGNIAVWDLHN--------QTLV 544 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCc---chhhhhhhcCCccceeeeeccCCcEEEEEccc--------ceee
Confidence 999999999999999999987644332222211 11677899999999888 55999999999987 4555
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
..+.+|...+.|+.+++ ++..|.+|+-|.+|+.||+++++.+.... ....|.++..+|.+.++++|- ..+.+.+...
T Consensus 545 rqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~ 621 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHT 621 (705)
T ss_pred ecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEec
Confidence 56789999999999999 66789999999999999999988765544 457899999999999999998 8999988877
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
....+. .+ ..|.+.|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+ ..++|.++..+.+.++++||+.|
T Consensus 622 skp~ky--ql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 622 SKPEKY--QL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred CCccce--ee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 665332 22 5688999999999999999999999999999999898887776 45689999999999999999987
Q ss_pred ceeeec
Q 014125 376 RRFPVD 381 (430)
Q Consensus 376 ~~~~vw 381 (430)
..-.||
T Consensus 696 kkATVY 701 (705)
T KOG0639|consen 696 KKATVY 701 (705)
T ss_pred cceEEE
Confidence 655444
No 108
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2e-27 Score=188.94 Aligned_cols=281 Identities=15% Similarity=0.251 Sum_probs=211.8
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
-.|+.|++.|.+||+|+.||.|.|||+.+.... .....|-.+|.+++| |++|+.|+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-----------------r~lsaH~~pi~sl~W-------S~dgr~Ll 81 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-----------------RMLSAHVRPITSLCW-------SRDGRKLL 81 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-----------------hhhhccccceeEEEe-------cCCCCEee
Confidence 789999999999999999999999999876432 244456689999999 88999999
Q ss_pred EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
+++.|..|.+||+..|.+...+.... +|+...|+|.....+ +-.+..-.+-++..+... .+.....+
T Consensus 82 tsS~D~si~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-----~Lp~d~d~ 150 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-----VLPKDDDG 150 (405)
T ss_pred eecCCceeEEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-----eccCCCcc
Confidence 99999999999999999988887765 899999999764433 335555555555432111 11111111
Q ss_pred C-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 221 Q-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 221 ~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
. .....+..|.+ .++++++|...|.+.+||..+.+++..++-.. ..|..+.++..|++|+.-+ .|..||.|+++.-
T Consensus 151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di 228 (405)
T KOG1273|consen 151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDI 228 (405)
T ss_pred ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhh
Confidence 1 11223346777 78899999999999999999999988887555 6899999999999999999 9999999998732
Q ss_pred ceE-----EEEeec--ccCCccceEEEEEcCCCCEEEEEccC-CcEEEEEcCCCCeeccccccc-CCeeEEEEcCCCcEE
Q 014125 299 VQV-----VYKLYR--SSEHTNQRILFDIEPSGRHLGTGGQD-GLVHIYDLQTGKWISGFQAAA-DTVNGFSFHPFLPMA 369 (430)
Q Consensus 299 ~~~-----~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 369 (430)
... ...... ..-....-.+++|+.+|.|++.|+.. ..++||.-..|.+++.+.|.. .....+.|+|-...+
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence 111 000000 01122344578999999999888753 459999999999999999887 468899999999888
Q ss_pred EEeeCCceeeec
Q 014125 370 ASSSGHRRFPVD 381 (430)
Q Consensus 370 ~s~~~d~~~~vw 381 (430)
++- ..|.+++|
T Consensus 309 ~si-~sg~v~iw 319 (405)
T KOG1273|consen 309 ASI-ASGVVYIW 319 (405)
T ss_pred eec-cCCceEEE
Confidence 887 44455555
No 109
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-28 Score=216.83 Aligned_cols=266 Identities=17% Similarity=0.247 Sum_probs=190.5
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc-----cccccceEEEEECC---CCcEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-----VDEITAAFSVAFNP---TGTKI 188 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~---~~~~l 188 (430)
.|.+.|+++.| |+||++||+|+.||.|+||.+...+....-..... ......+..+.-++ .++..
T Consensus 265 ah~gaIw~mKF-------S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKF-------SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred ccCCcEEEEEe-------CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 68889999999 88999999999999999999876433111000000 00000000011111 01111
Q ss_pred E--EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 189 F--AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 189 ~--~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
. .+ .... .+.... .+.....+...+.+|.+.|..+.|+. .++|++++.|.+|++|++...+++..|. |.
T Consensus 338 ~~~~~~~s~~-~~~p~~----~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn 409 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLK----AFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HN 409 (712)
T ss_pred ccccccCCcc-ccCCCc----cccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cC
Confidence 1 11 1111 111111 11122334445689999999999996 4599999999999999999999999998 99
Q ss_pred cCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 266 GGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 266 ~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
..|+|++|+| |.+|+++|+ -||.||||++...+ +. .. ..-..-|++++|.|+|++.+.|+.+|..++|++...
T Consensus 410 dfVTcVaFnPvDDryFiSGS-LD~KvRiWsI~d~~-Vv-~W---~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGS-LDGKVRLWSISDKK-VV-DW---NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred CeeEEEEecccCCCcEeecc-cccceEEeecCcCe-eE-ee---hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 9999999999 678999999 99999999998763 22 11 234578999999999999999999999999999987
Q ss_pred Ceeccccc---------ccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCc---------------------------cc
Q 014125 345 KWISGFQA---------AADTVNGFSFHPFLP-MAASSSGHRRFPVDDFED---------------------------LH 387 (430)
Q Consensus 345 ~~~~~~~~---------~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~---------------------------l~ 387 (430)
+....+.- |. .|+++.|.|... .++..+.|.+|+|+|... ++
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 76554431 22 799999998655 577778899999997732 88
Q ss_pred cccCCCcEEEEeecccc
Q 014125 388 LSGDENCVSVWSFLYAS 404 (430)
Q Consensus 388 ~~~~d~~i~~w~~~~~~ 404 (430)
++++|..|++|++....
T Consensus 563 s~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDSFN 579 (712)
T ss_pred EeecCceEEEEeCCCCc
Confidence 99999999999985433
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.5e-27 Score=194.56 Aligned_cols=251 Identities=19% Similarity=0.264 Sum_probs=207.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+.++.||...|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+.-
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------~~~~~~~h~~~V~~ls~---- 311 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------EPTSSRPHEEPVTGLSL---- 311 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------Cccccccccccceeeee----
Confidence 456899999999999999999999999999999999987542 33345567789999988
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|.|.+|++++.||+..+.|+.++..+....... ....+++.+|+|||.++.+| .|+.|+|||+..+.
T Consensus 312 ---h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~----- 380 (506)
T KOG0289|consen 312 ---HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT----- 380 (506)
T ss_pred ---ccCCcEEEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-----
Confidence 6689999999999999999999998877665431 11268899999999999876 89999999998742
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
....+.+|.++|..++|+. ++.+|++++.|+.|++||+|.-+...++...+ .++.++.|.+.|.+|+.++ .|=+
T Consensus 381 ---~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~ 455 (506)
T KOG0289|consen 381 ---NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQ 455 (506)
T ss_pred ---ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeE
Confidence 3344578999999999999 88899999999999999999888776665332 3799999999999999998 7777
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
|++++-.+. ....+.....|.+..+.+.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k--~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTK--SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccc--cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 777764432 23344444667788899999999999999999999888764
No 111
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=214.55 Aligned_cols=248 Identities=19% Similarity=0.296 Sum_probs=206.5
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.||.+.|.++++..-+.+|++|+.|.++++||..++.+.. ...+|.+.|.++..
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-----------------~l~gh~stv~~~~~------- 299 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-----------------SLQGHTSSVRCLTI------- 299 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-----------------EecCCCceEEEEEc-------
Confidence 389999999999998878899999999999999998876532 33456688998876
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
...++++|+.|.+|++|+++++..+..+.+|.. +|.++..+ +.+++ ++.|++|++||+.+ ..
T Consensus 300 --~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--------~~ 362 (537)
T KOG0274|consen 300 --DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDGTVKVWDPRT--------GK 362 (537)
T ss_pred --cCceEeeccCCceEEEEeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCceEEEEEhhh--------ce
Confidence 455888899999999999999999999887655 99999997 55666 55999999999985 34
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
+...+.+|...|.++.+.+ . ..+++|+.|++|++||+++. +++..+.+|..-+..+.+ .+++|++++ .|++|++
T Consensus 363 cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~-aD~~Ik~ 437 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS-ADGTIKL 437 (537)
T ss_pred eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc-ccccEEE
Confidence 5555688999999998866 2 79999999999999999999 999999999988877665 677888888 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
||..++.... .+.. .+...+..+++. ...+++++.||.+++||++++++...+-.+
T Consensus 438 WD~~~~~~~~-~~~~--~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 438 WDAEEGECLR-TLEG--RHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eecccCceee-eecc--CCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 9999886543 3221 166778888775 467899999999999999999998877433
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.8e-27 Score=218.45 Aligned_cols=271 Identities=18% Similarity=0.260 Sum_probs=206.5
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccc--ccccccCcccceeeecCCCeeeeeeec
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC--SLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
+.+.....|.+.|+|+.|+|||++||+||+|+.|.||..... ........ ................|...|.+++|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W- 137 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW- 137 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceecc-
Confidence 445577899999999999999999999999999999998741 11111100 01111223344566779999999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
+|++.+|++++.|++|.+|+..+.+.+..+..|.. .|..+.|.|-|+++++ +.|++|++|++..-+.
T Consensus 138 ------sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i- 205 (942)
T KOG0973|consen 138 ------SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI- 205 (942)
T ss_pred ------CCCccEEEEecccceEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEccccee-
Confidence 77899999999999999999999999999998877 8999999999999995 6999999999654111
Q ss_pred ccccccccCCC--CCCCcceEEEEEcCCCCceEEEecC----CCeEEEEEcCCceeeEEeeccccCeEEEEEccC-----
Q 014125 208 FEKYSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD----- 276 (430)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----- 276 (430)
...+...+ ..-...+..+.|+| ++.+|++... -.++.|.+..+.+.-..+-+|.+++.+++|+|.
T Consensus 206 ---~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 206 ---EKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred ---eEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence 11111111 12234688999999 5557766532 346888988888888899999999999999982
Q ss_pred CC------------EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 277 GN------------YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 277 ~~------------~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.+ .+++|+ .|++|.||.....++.. ... .-....|..++|+|||..|+++|.||+|.+..+..
T Consensus 282 ~~ng~~~~~~~~y~i~AvgS-qDrSlSVW~T~~~RPl~-vi~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGS-QDRSLSVWNTALPRPLF-VIH--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cccCCccCCCcceEEEEEec-CCccEEEEecCCCCchh-hhh--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 11 345555 99999999986664432 221 33466799999999999999999999999999875
No 113
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=196.89 Aligned_cols=300 Identities=14% Similarity=0.195 Sum_probs=220.4
Q ss_pred ceeecccCCCceeEEEECcCC--ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
...+..-|.+.|++++|+|.- +.+|+|..-|.|-+||+.+.+. +.....+...|+.+|.++.|+|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------d~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------DKDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------ccCceEEeccCCccccceEecC
Confidence 345677789999999999953 5889999999999999963321 1223446677889999999988
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
. +...+++.+.||+|++-|++.+.....+.... ....+.++.|+.+...++. ..=|...+||.+.++...
T Consensus 245 ~------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~---d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 245 A------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT---DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred C------ChhheeeeccCceeeeeeecchhhHHHhhcCc---cceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 5 44589999999999999998875443333311 1125667888887776664 455699999999876544
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
... .-|...|++++++|....+|++++.|++.+|||++.-.. ......|...|.+..|||.+-.|++.+
T Consensus 316 ~~~-------~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 316 ENL-------RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred hhh-------hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 322 345557999999999999999999999999999986422 233345999999999999988899999
Q ss_pred cCCCeEEEEeCC---CCceEEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-Cee
Q 014125 285 RKDPYILCWDLR---KAVQVVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVN 358 (430)
Q Consensus 285 ~~d~~i~i~d~~---~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~ 358 (430)
.|..|+|||.. ....+...+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.
T Consensus 389 -~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 389 -QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred -cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 99999999984 22222222222122222 234578999999999999999999999998887777654443 555
Q ss_pred E-EEEcCCCcEEEEeeC-Cceeeec
Q 014125 359 G-FSFHPFLPMAASSSG-HRRFPVD 381 (430)
Q Consensus 359 ~-~~~~~~~~~l~s~~~-d~~~~vw 381 (430)
+ ..|||.+..+++|+. .|.+.||
T Consensus 468 ~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 468 SVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cceeecccccceeccCCccceEEEE
Confidence 4 489999996666654 4444444
No 114
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.8e-28 Score=186.85 Aligned_cols=267 Identities=17% Similarity=0.274 Sum_probs=225.4
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
..-.+|..+|..++|+|. .|+|-.|++++.||.-.+-+-++|..+.++.+|.. .|++...+.+....+ ++
T Consensus 8 l~c~ghtrpvvdl~~s~i----tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkg-----avw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPI----TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-----AVWSATLNKNATRAASAA 78 (334)
T ss_pred eEEcCCCcceeEEeccCC----CCCceEEEEeccCCCchhccCCCCCcEEeeeccCc-----ceeeeecCchhhhhhhhc
Confidence 345568889999999987 88999999999999999999999999999999887 999999988877777 45
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeeccccCeEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTH 270 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~ 270 (430)
.|-+-++||.-++... ....|...|.+++|+. +.+.|++|+.+.-+++||++..+ +...+.+|.+.|..
T Consensus 79 adftakvw~a~tgdel---------hsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDEL---------HSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT 148 (334)
T ss_pred ccchhhhhhhhhhhhh---------hhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence 8999999998764321 1235667899999999 77899999999999999998764 56788899999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.|....+.|++++ .|++||+||.+++.... .+ ....+|+++.++++|++|.++ ..+.|.+||..+..+++.+
T Consensus 149 v~wc~eD~~iLSSa-dd~tVRLWD~rTgt~v~-sL----~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 149 VLWCHEDKCILSSA-DDKTVRLWDHRTGTEVQ-SL----EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred EEEeccCceEEeec-cCCceEEEEeccCcEEE-EE----ecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec
Confidence 99999999999988 99999999999986554 32 245678999999999987765 4567999999999998887
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC--------------------------ccccccCCCcEEEEeecccc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE--------------------------DLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~--------------------------~l~~~~~d~~i~~w~~~~~~ 404 (430)
+.. -.|.+.+.+|+...+++|+.|..++.+|.. ..++++.||+||+|....++
T Consensus 222 k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 222 KMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 743 478999999999999999999999888433 26788999999999888766
Q ss_pred cc
Q 014125 405 MM 406 (430)
Q Consensus 405 ~~ 406 (430)
..
T Consensus 301 ~~ 302 (334)
T KOG0278|consen 301 TY 302 (334)
T ss_pred ch
Confidence 54
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.9e-27 Score=209.09 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=224.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
....+|+..++-..++.++.. .+.||.+............. ..... ..-...++.|. .-+.++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~------k~kqn----~~~S~~DVkW~------~~~~Nl 102 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRF------KTKQN----KFYSAADVKWG------QLYSNL 102 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeec------ccccc----eeeehhhcccc------cchhhh
Confidence 346778888998899988875 78888876543322111100 00000 01245567785 236789
Q ss_pred EEEEeCCCcEEEEeccC---CceeeeeecccccccccceEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccccccccc
Q 014125 141 FASTTRDHPIHLWDATT---GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
||+++..|.|.+||+.. .+.+..+..|.. .+.++.|++....++ + +.||.|++||++.... .
T Consensus 103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-----s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------~ 169 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHER-----SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------K 169 (839)
T ss_pred heeecCCCcEEEEecCccccchhhhHhhhhcc-----ceeeeeeccCCccEEEecCCCceEEEEeeecccc--------c
Confidence 99999999999999987 444445555554 899999999886655 4 4999999999987432 2
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
....+....|+.++|+|..++.|+++...|.+.+||++.. ++...+.+|.++|.++.|+|++.+||+|| .|+.|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEe
Confidence 2234566789999999988999999999999999999975 46778889999999999999999999999 999999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCE-EEEEc--cCCcEEEEEcCCC-CeecccccccCCeeEEEEcC-CCcEE
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGG--QDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHP-FLPMA 369 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l 369 (430)
+.+........ .....++.++.|-|...+ |++++ .|-.|+|||++.. -+..++..|...++.++|.. +...|
T Consensus 249 ~t~~~~~~~~t---InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHT---INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeE---EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 98654332222 234578899999998765 66555 3778999999865 45667888999999999976 55688
Q ss_pred EEeeCCceeeec-----------CCCccccccCCCcEEE
Q 014125 370 ASSSGHRRFPVD-----------DFEDLHLSGDENCVSV 397 (430)
Q Consensus 370 ~s~~~d~~~~vw-----------~~~~l~~~~~d~~i~~ 397 (430)
.+++.|+.+... ......+.|.+|.+.+
T Consensus 326 ~s~sKD~tv~qh~~knat~pid~a~~~~~s~g~~g~l~f 364 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKNATTPIDLANNGGLSVGQFGDLYF 364 (839)
T ss_pred EeecCccHHHHhhhhcccChhhhcCcccccccccCceeE
Confidence 999999988765 2233455566665543
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.3e-27 Score=186.08 Aligned_cols=250 Identities=16% Similarity=0.295 Sum_probs=203.2
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
..+|...|+.++- ......+.+++.|.+.++|.++++.++..+.+|.+ .|.+++|++.+.++++ +.|
T Consensus 144 ~~GHkDGiW~Vaa-------~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-----SVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 144 LEGHKDGIWHVAA-------DSTQPICGTASADHTARIWSLESGACLATYTGHTG-----SVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred hcccccceeeehh-------hcCCcceeecccccceeEEeeccccceeeeccccc-----ceeeEEeccccceEEEccCC
Confidence 3456678888876 33345899999999999999999999999998876 9999999999998884 589
Q ss_pred CeEEEEEc------CCCCCc--------------------------ccccccccCCCCCCCcceEEEEEcCCCCceEEEe
Q 014125 194 KSVRVFDV------HRPGRD--------------------------FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241 (430)
Q Consensus 194 ~~i~v~d~------~~~~~~--------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 241 (430)
++-.||.. ..+..+ ...+..+...+.+|...|.+..|.. ++..++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTa 290 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTA 290 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeee
Confidence 99999972 111000 0012223345578889999999998 88899999
Q ss_pred cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc
Q 014125 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 321 (430)
Q Consensus 242 ~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 321 (430)
+.|.+-.+||+++++++..+.+|....+.++-+|..+++++++ .|-+.++||++..-..+ ..+.+|...|+++.|.
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS-rDtTFRLWDFReaI~sV---~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS-RDTTFRLWDFREAIQSV---AVFQGHTDTVTSVVFN 366 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcceEEEEec-cCceeEeccchhhccee---eeecccccceeEEEEe
Confidence 9999999999999999999999999999999999999998888 99999999999654443 3347999999999998
Q ss_pred CCCCEEEEEccCCcEEEEEcCCCC-eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 322 PSGRHLGTGGQDGLVHIYDLQTGK-WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+ ..+++|+.|.+|+|||+++.+ ++.+++ ..++++.++.+..++.++.--.+..++++|.
T Consensus 367 ~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 367 TD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred cC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEec
Confidence 75 568999999999999999754 456665 5678899999988888888776666666654
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.7e-26 Score=181.44 Aligned_cols=258 Identities=15% Similarity=0.216 Sum_probs=198.1
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i 196 (430)
...|.+++|+|. ...+++.++.||+||+|+++.. ..+. .....+..+|.+++|+.+|..++ ++.|+.+
T Consensus 27 ~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 27 EDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred ccchheeEeccc------cCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 468999999552 4567779999999999999873 3322 22223445999999999998888 4599999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCc--eEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
++||+.++.. .....|..+|.++.|-+ +.. .|++|+.|.+|+.||++...++.++. ....++++..
T Consensus 97 k~wDL~S~Q~---------~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv- 164 (347)
T KOG0647|consen 97 KLWDLASGQV---------SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV- 164 (347)
T ss_pred EEEEccCCCe---------eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc-
Confidence 9999987421 11267889999999987 544 89999999999999999999988887 4566777665
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC--Ceeccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG--KWISGFQA 352 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~ 352 (430)
....++++. .++.|.+|+++++....+... ....-.+.+++..++....+.|+-+|++.|..++.+ +.-..|+.
T Consensus 165 -~~pm~vVat-a~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 165 -LYPMAVVAT-AERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred -cCceeEEEe-cCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 345677777 899999999988754433332 224456788988888888899999999999999887 33445666
Q ss_pred ccC---------CeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------cccccCCCcEEEEeecc
Q 014125 353 AAD---------TVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 353 ~~~---------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------l~~~~~d~~i~~w~~~~ 402 (430)
|.. .|++|+|+|....|+|+++||++.+||.+. ..+-..+|.|..|.+.+
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 652 588999999999999999999999997543 12224688888887664
No 118
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=195.14 Aligned_cols=244 Identities=18% Similarity=0.249 Sum_probs=190.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...++.|-.+.|+++.|.++++.+++++.|+.+++|+++..+....+ .+|...|.++.|.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-----------------sGHtdkVt~ak~~--- 270 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-----------------SGHTDKVTAAKFK--- 270 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-----------------cccccceeeehhh---
Confidence 44678888899999999999999999999999999999876554333 3366899999983
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
.....+++|+.|.+|++||+....+..++-... .+..|..+ ...+++| .|++|++||++.+....
T Consensus 271 ----~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~-- 336 (459)
T KOG0288|consen 271 ----LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR-- 336 (459)
T ss_pred ----ccccceeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEeccCCceee--
Confidence 334459999999999999999987776654433 44455554 3445566 89999999998753321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc----ccCeEEEEEccCCCEEEEEecC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. ..-.+.|+++..++ ++..+.+++.|.++.++|+++.+....+.+. ....+.+.|||++.|+++|+ .
T Consensus 337 ------s-v~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~ 407 (459)
T KOG0288|consen 337 ------S-VPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-A 407 (459)
T ss_pred ------E-eecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-C
Confidence 1 12234799999999 6677778899999999999998887776642 23588999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
||.|+||++.+++... .+. .......|++++|+|.|.+|++++.++.+.+|.
T Consensus 408 dgsv~iW~v~tgKlE~-~l~-~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEK-VLS-LSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCcEEEEEccCceEEE-Eec-cCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999885432 322 122333799999999999999999999999993
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=5e-27 Score=197.92 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=197.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCcEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (430)
..+.|++-|.++.. +...+++++|+.. .|+|||+.... .+..+... .....|.++...|||+.|++
T Consensus 414 ~tL~HGEvVcAvtI-------S~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl---~rdnyiRSckL~pdgrtLiv 482 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTI-------SNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCL---NRDNYIRSCKLLPDGRTLIV 482 (705)
T ss_pred hhhccCcEEEEEEe-------cCCcceeEecCCC-eEEEeeccCCCCCCcccccccc---CcccceeeeEecCCCceEEe
Confidence 45678888888877 6677889998865 49999997542 22222222 22237889999999998885
Q ss_pred -EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 191 -GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 191 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
|.-.++.|||+..+.... +..+....-...+++.+| +.++.+++..||.|.|||+.+...++.|++|...+.
T Consensus 483 GGeastlsiWDLAapTpri------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRI------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred ccccceeeeeeccCCCcch------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 478899999998754322 222233334577899999 677899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
||..+++|..|.+|+ -|++||.||++++.++.. ....+.|.++..+|++.+|+.|-+++.+.|.... +...+.
T Consensus 556 cIdis~dGtklWTGG-lDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyq 628 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGG-LDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQ 628 (705)
T ss_pred eEEecCCCceeecCC-Cccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeecccCcEEEEecC-Ccccee
Confidence 999999999999999 999999999999865432 3456789999999999999999999999988766 344566
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+..|++.|.++.|.+.|+++++.+.|+-+..|
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhc
Confidence 77799999999999999999999999999998
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=191.15 Aligned_cols=246 Identities=17% Similarity=0.243 Sum_probs=200.5
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeee-eec------c-----cc-cccccceEEE
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRA------Y-----DA-VDEITAAFSV 179 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~------~-----~~-~~~~~~v~~~ 179 (430)
.....|..++.+++. +|+..+.++++.+|+|.-|++.+++.... ++. + .. ..|...+.++
T Consensus 136 ~~~~~H~~s~~~val-------s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVAL-------SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEe-------eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 344557788999998 77999999999999999999998874411 111 1 11 2456689999
Q ss_pred EECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee
Q 014125 180 AFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL 258 (430)
Q Consensus 180 ~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 258 (430)
+.++|+++|++| .|..|.||+.++. .....+.+|.+.|.+++|-. +...+++++.|++|++|++.....+
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~--------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTL--------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCccc--------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHH
Confidence 999999999965 8999999999873 33344689999999999998 8889999999999999999998889
Q ss_pred EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE
Q 014125 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338 (430)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 338 (430)
.++-+|...|.+|....-++.+-+++ .|+++++|++....+.++ .++.+.+-|++|-.+ ..+++|+.+|.|.+
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesqlif-----rg~~~sidcv~~In~-~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQLIF-----RGGEGSIDCVAFIND-EHFVSGSDNGSIAL 352 (479)
T ss_pred HHHhCCccceeeechhcccceEEecc-ccceeEEEeccccceeee-----eCCCCCeeeEEEecc-cceeeccCCceEEE
Confidence 99999999999999888888777777 999999999966544432 356778888998754 67899999999999
Q ss_pred EEcCCCCeeccccc-c-----------cCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 339 YDLQTGKWISGFQA-A-----------ADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 339 wd~~~~~~~~~~~~-~-----------~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
|++.+.+++.+.+. | ...|++++..|...++++|+.+|.+++|
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence 99999988776541 1 1268899999999999999977666666
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-25 Score=177.19 Aligned_cols=265 Identities=17% Similarity=0.251 Sum_probs=193.1
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
...+|.+-|.++.|.+.|+.+|||+.|++|+|||..+.. ..-........|++.|..+.|.+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------~~W~~Ts~Wrah~~Si~rV~WAh----- 69 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------GTWSCTSSWRAHDGSIWRVVWAH----- 69 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------CceEEeeeEEecCCcEEEEEecC-----
Confidence 457899999999999999999999999999999975442 11222334456778999999966
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCC--cEEE-EEcCCeEEEEEcCCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG--TKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~-~~~d~~i~v~d~~~~ 204 (430)
..-|+.+|+++.|+++.||.-... +.+.... -......|+.+.|.|.. -.++ ++.||.||||+.-.+
T Consensus 70 PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt---l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 70 PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT---LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ccccceEEEEecCCceeeeeecccccccccceeEEEEE---eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 345889999999999999986321 1111111 11233489999999974 4555 569999999998654
Q ss_pred CCcc--ccc---ccccCCCCCCCcceEEEEEcCC--CCceEEEecCC-----CeEEEEEcCCc----eeeEEeeccccCe
Q 014125 205 GRDF--EKY---STLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYS-----QTSAIYREDNM----ELLYVLHGQEGGV 268 (430)
Q Consensus 205 ~~~~--~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~v~~~d~~~~----~~~~~~~~~~~~i 268 (430)
.... ... ..+......+..+..|+.|+|. ...+||+|+.+ +.++||..... ..+..+.+|..+|
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 3211 111 1111222345667889999873 25678888876 57888876543 3456677899999
Q ss_pred EEEEEccC----CCEEEEEecCCCeEEEEeCCCCc----------------eEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 269 THVQFSRD----GNYLYTGGRKDPYILCWDLRKAV----------------QVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 269 ~~~~~~~~----~~~l~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
+.|+|.|+ ...|++++ .|| |+||.+.... ..+..+.....|.+.|+.+.|+-.|..|+
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred eeeeeccccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 99999996 24677887 899 9999987421 12333444578999999999999999999
Q ss_pred EEccCCcEEEEEcC
Q 014125 329 TGGQDGLVHIYDLQ 342 (430)
Q Consensus 329 ~~~~dg~i~vwd~~ 342 (430)
+.+.||.|++|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999865
No 122
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=174.26 Aligned_cols=234 Identities=17% Similarity=0.211 Sum_probs=193.2
Q ss_pred eecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
....+|.+.|-.++|+| ....|++++.|.+|++||...++.. ........-.-+.|
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~------------------~~i~~~~eni~i~w----- 114 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT------------------ARIETKGENINITW----- 114 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE------------------EEeeccCcceEEEE-----
Confidence 46789999999999998 5679999999999999999876442 22222233345677
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|+|.+++.++.|..|.+.|..+.+.....+... .+..++|+-++.+++ +...|+|.|.....
T Consensus 115 --sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~------e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-------- 178 (313)
T KOG1407|consen 115 --SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF------EVNEISWNNSNDLFFLTNGLGCVEILSYPS-------- 178 (313)
T ss_pred --cCCCCEEEEecCcccEEEEEecccceeehhcccc------eeeeeeecCCCCEEEEecCCceEEEEeccc--------
Confidence 7899999999999999999998887766555433 667888987777777 45679999988754
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
......+..|+....|+.|+| .+++||+|+.|..+.+||+..--+++.+..+.-+|..+.|+-+|++|++++ .|..|-
T Consensus 179 Lkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~ID 256 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFID 256 (313)
T ss_pred cccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEE
Confidence 233344578889999999999 778999999999999999999888999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
|=++.++.+.... .+.++...++|+|...+||.+..|
T Consensus 257 IA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 257 IAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecC
Confidence 9999999765432 467888999999999999988765
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.9e-27 Score=203.31 Aligned_cols=254 Identities=15% Similarity=0.307 Sum_probs=206.2
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCce------eeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLL------RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
.|.+++|++|++||.|++|+...... ...++.|. ..|..+....+++.++ ++.|-+|++|+.....
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-- 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-- 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence 45677899999999999999865432 33344433 3788888888886666 7799999999997643
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--ee--------EEee-ccccCeEEEEEccC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LL--------YVLH-GQEGGVTHVQFSRD 276 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~--------~~~~-~~~~~i~~~~~~~~ 276 (430)
.-....+..|...|.|+++-..+..++|+|+-|+.|.+||++++. .+ ..+. ++..+|++++.++.
T Consensus 107 ----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 107 ----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 123334578899999999944378899999999999999999772 22 2222 67789999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCC
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADT 356 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 356 (430)
|..|++|+ ..+.+++||.++..+... + .+|...|..+..++||+.+++++.||+|++||+.-.+++.++..|...
T Consensus 183 ~t~ivsGg-tek~lr~wDprt~~kimk-L---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 183 GTIIVSGG-TEKDLRLWDPRTCKKIMK-L---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ceEEEecC-cccceEEeccccccceee-e---eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 98888888 999999999999865542 2 589999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEeecccc
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~~~~~~ 404 (430)
|+++.-+|+-..+.+|+.||.|..-+... +-++..|+.|+-|.....-
T Consensus 258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred eEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 99999999999999999999988764432 3455668888888766544
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.4e-26 Score=188.24 Aligned_cols=295 Identities=15% Similarity=0.166 Sum_probs=218.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..-..-.+.|++|.|+|....|++|+.||+++||.++.... ..... ..-...+|.+.+|
T Consensus 207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------~~lqS-~~l~~fPi~~a~f------ 265 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------PKLQS-IHLEKFPIQKAEF------ 265 (514)
T ss_pred ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------hhhee-eeeccCccceeee------
Confidence 34444567899999999999999999999999999875321 11111 1123357888888
Q ss_pred cCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 134 SDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 134 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
.|+|. .+++++....++.||+.+.+....-+.... . ...+..+..+|++.+|+ .|..|.|.+....+..- +
T Consensus 266 -~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----i 338 (514)
T KOG2055|consen 266 -APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-E-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----I 338 (514)
T ss_pred -cCCCceEEEecccceEEEEeeccccccccccCCCCc-c-cchhheeEecCCCCeEEEcccCceEEeehhhhhhh----h
Confidence 66787 899999999999999998876544333221 1 22566788899999998 78999999988765311 1
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc-CeEEEEEccCCCEEEEEecCCCeE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.. ....+.|..++|+.+ +..|++++.+|.|.+||++...+++.+....+ .-++++.++++.+|++|+ ..|.|
T Consensus 339 ~s-----~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiV 411 (514)
T KOG2055|consen 339 TS-----FKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIV 411 (514)
T ss_pred he-----eeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceE
Confidence 11 123467999999984 56777777789999999999998888874322 235778889999999999 99999
Q ss_pred EEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEcc--CCcEEEEEcCCCCeeccccccc---CCeeEEEEc
Q 014125 291 LCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ--DGLVHIYDLQTGKWISGFQAAA---DTVNGFSFH 363 (430)
Q Consensus 291 ~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~ 363 (430)
.|||..+.... ..++.....-...|++++|+|++++||.+|. +..+++-.+.+......++... +.|++++|+
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 99997643111 1122223445678999999999999888775 5679999988877766665433 368999999
Q ss_pred CCCcEEEEeeCCceeeecCC
Q 014125 364 PFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~vw~~ 383 (430)
|.+.+||.|...|++.+|.+
T Consensus 492 P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCceEEeecCCCceeeEee
Confidence 99999999997777776654
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.3e-24 Score=190.01 Aligned_cols=281 Identities=14% Similarity=0.169 Sum_probs=195.7
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPI 150 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i 150 (430)
++.+++++.|+.|++||+.+++.... +.....+..++| +|++..+ ++++.++.|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~------------------~~~~~~~~~l~~-------~~dg~~l~~~~~~~~~v 55 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT------------------FPVGQRPRGITL-------SKDGKLLYVCASDSDTI 55 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE------------------EECCCCCCceEE-------CCCCCEEEEEECCCCeE
Confidence 35788999999999999986643211 111234566777 6788766 567788999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
++||+.+++....+..+. .+..++|+|+++.+++ + .++.|++||+..... . ..+ . ....+.++
T Consensus 56 ~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~---~~~----~-~~~~~~~~ 120 (300)
T TIGR03866 56 QVIDLATGEVIGTLPSGP------DPELFALHPNGKILYIANEDDNLVTVIDIETRKV-L---AEI----P-VGVEPEGM 120 (300)
T ss_pred EEEECCCCcEEEeccCCC------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-E---eEe----e-CCCCcceE
Confidence 999999988776655432 3457899999987764 3 589999999976311 1 111 1 11235789
Q ss_pred EEcCCCCceEEEecCCC-eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 229 AFSPTHTGMLAIGSYSQ-TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
+|+| ++.+++++..++ .+.+||.++++....+. ....+.+++|+|++++|++++..++.|++||+++..........
T Consensus 121 ~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 121 AVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 9999 556777777664 57788998877665543 23456789999999988766536999999999987433211111
Q ss_pred cc---CCccceEEEEEcCCCCEEEE-EccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 308 SS---EHTNQRILFDIEPSGRHLGT-GGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 308 ~~---~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.. ........++|+|+++++++ .+.++.+.+||+.+++.+..+. +...+.+++|+|++++|++++.
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~--------- 268 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG--------- 268 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC---------
Confidence 00 01123456889999998554 4556789999999988776553 4457899999999999887642
Q ss_pred CccccccCCCcEEEEeecccccccccCC
Q 014125 384 EDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 384 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.++.|++||+..++.+..+..
T Consensus 269 -------~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 269 -------VSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred -------CCCeEEEEECCCCcEEEEEEc
Confidence 467788888887777666643
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=177.27 Aligned_cols=244 Identities=17% Similarity=0.237 Sum_probs=185.8
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECC--CCcEEE-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNP--TGTKIF-A 190 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~-~ 190 (430)
.|...|.++.. .-.|++|+|++.|++|+|+..+.+. .+.++.+|.+ +|..++|.. -|.+|+ +
T Consensus 9 ~H~D~IHda~l-------DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-----PVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 9 QHEDMIHDAQL-------DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-----PVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhHhhh-------hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-----CeeEEeecccccCcEeeEe
Confidence 34455555443 3368899999999999999998653 4556666665 999999976 688898 5
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCc---eeeEEeecccc
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEG 266 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~ 266 (430)
+.||.|.||.-..+ .+. .......|...|++++|.|.+ +-+|++++.||.|.+.+.++. ........|.-
T Consensus 77 sYDgkVIiWke~~g--~w~----k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 77 SYDGKVIIWKEENG--RWT----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred ecCceEEEEecCCC--chh----hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 69999999997664 221 122346788999999999954 557899999999999987764 23445568999
Q ss_pred CeEEEEEccC---C-----------CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC----CEEE
Q 014125 267 GVTHVQFSRD---G-----------NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG----RHLG 328 (430)
Q Consensus 267 ~i~~~~~~~~---~-----------~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 328 (430)
.|++++|.|- | +.|++++ .|..|+||+..+..-... ....+|...|+.++|.|.- .+||
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-cDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-CDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccC-CccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999986 4 5699999 999999999988632221 1247899999999999963 5799
Q ss_pred EEccCCcEEEEEcCCC-C-e-ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 329 TGGQDGLVHIYDLQTG-K-W-ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~~-~-~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+++.||++.||..+.. + . ...+......+..+.|++.|+.|+.++.|+.+.+|
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 9999999999987632 1 1 22233456789999999999999999865555555
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=2.7e-24 Score=181.56 Aligned_cols=323 Identities=15% Similarity=0.194 Sum_probs=235.1
Q ss_pred CCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
++.|....|+|.+. .+++++ .|.+..|++..+.+...... +.....+.|.+++|. ++|
T Consensus 200 ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~-------------fek~ekk~Vl~v~F~-------eng 258 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGI-------------FEKREKKFVLCVTFL-------ENG 258 (626)
T ss_pred cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeec-------------cccccceEEEEEEEc-------CCC
Confidence 45678899999555 555555 57899999988765432211 122233679999994 444
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc----------c
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD----------F 208 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~----------~ 208 (430)
-+++|..+|.|.||+..+.+..+....|.. .|.+++.-.+|.++.++.|..|..||-...... .
T Consensus 259 -dviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-----gv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 259 -DVITGDSGGNILIWSKGTNRISKQVHAHDG-----GVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred -CEEeecCCceEEEEeCCCceEEeEeeecCC-----ceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCe
Confidence 488999999999999987776666655554 999999999999999779999999993321100 0
Q ss_pred ccc----------------------ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc
Q 014125 209 EKY----------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 209 ~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
+.+ ........+|......++.+| ..+.+++++.|+.+++|+ ..++..... -..
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d 408 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKI-IED 408 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEE-ecC
Confidence 000 001111246777788899999 778999999999999999 445544443 457
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
++.++.|+|.| .++++. ..|...+.|.++.... .+ +....++++++|+|+|.+||.|+.|+.|+||-+.....
T Consensus 409 ~~~~~~fhpsg-~va~Gt-~~G~w~V~d~e~~~lv--~~---~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGT-ATGRWFVLDTETQDLV--TI---HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred ceeEeeccCcc-eEEEee-ccceEEEEecccceeE--EE---EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 88999999999 888888 9999999999884322 22 22378899999999999999999999999999875433
Q ss_pred -eccc-ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------------------------
Q 014125 347 -ISGF-QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED--------------------------------------- 385 (430)
Q Consensus 347 -~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~--------------------------------------- 385 (430)
.... +.+..+|+.+.|++|+++|.+-+.|-.+..|....
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH 561 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh
Confidence 3222 23447999999999999999999999999993221
Q ss_pred ----cccccCCCcEEEEeeccccc---ccccCCCCcceeeeec
Q 014125 386 ----LHLSGDENCVSVWSFLYASM---MENADGINGCEFNCQS 421 (430)
Q Consensus 386 ----l~~~~~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~~~ 421 (430)
++++.+.|.|+++.+.-.+. -....+|.+ .+.++.
T Consensus 562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~-~vt~V~ 603 (626)
T KOG2106|consen 562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS-HVTNVA 603 (626)
T ss_pred hhhhhhccccCceEEEEccccCCCcccceeeccccc-eeEEEE
Confidence 67777889999998764333 233445544 344443
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=6.8e-26 Score=196.34 Aligned_cols=292 Identities=16% Similarity=0.225 Sum_probs=200.2
Q ss_pred EEECc---CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 66 IKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 66 ~~~sp---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..|++ ....||.+..||.|.++|....... + +.........|...|.++.|. |....|+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~---------ee~~lk~~~aH~nAifDl~wa-------pge~~lV 116 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--L---------EERQLKKPLAHKNAIFDLKWA-------PGESLLV 116 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc--h---------hhhhhcccccccceeEeeccC-------CCceeEE
Confidence 66765 2458999999999999998754321 0 011112345677899999994 4567899
Q ss_pred EEeCCCcEEEEeccCCceeee--eecccccccccceEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccc---------
Q 014125 143 STTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFE--------- 209 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~--------- 209 (430)
+++.|.++++||+.+++.... +.+|. ..+.+++|.|.+..++ + |.||.|.|||++.......
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred EccCCceeeeeeeccceeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 999999999999999887766 44444 4899999999987666 3 4999999999986441100
Q ss_pred -------cccccc---CCCCCCCcceEE---EEEcCCCCceEEEecC-CCeEEEEEcCCceeeEE--------eecc---
Q 014125 210 -------KYSTLK---GNKEGQAGIMSA---IAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYV--------LHGQ--- 264 (430)
Q Consensus 210 -------~~~~~~---~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~--------~~~~--- 264 (430)
...... .....+...|.+ +.+.. +...||+++. |+.|+|||++....... +..|
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 000000 011223333444 44445 5557777776 99999999997643322 2223
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
.-.+.++.....|.+|++.+ .|+.|++|++..........+........-..-..+|++.+|++|+.|...++|.+.+.
T Consensus 271 s~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred eeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc
Confidence 33678888888899999999 89999999998764332222211111122223456899999999999999999999976
Q ss_pred Ce-ecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecC
Q 014125 345 KW-ISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDD 382 (430)
Q Consensus 345 ~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~ 382 (430)
+. ...+.+|.-.|++++|.|..- -+++++.|-+++||+
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 54 667789999999999998532 455556665555553
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=7.2e-25 Score=185.01 Aligned_cols=328 Identities=17% Similarity=0.213 Sum_probs=238.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCC--------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK--------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (430)
..+.+.||++.|.|++.+||.-.+++|-.-| .++|||..+-..+. +.......|.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-----------------V~g~f~~GV~ 158 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-----------------VIGFFDRGVT 158 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeee-----------------eeccccccce
Confidence 3467889999999999999988888765544 49999965432111 1112335799
Q ss_pred eeeeccccCccCCCCceEEEE--eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEE
Q 014125 124 DFCWFPHMSASDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d 200 (430)
+++|++ ...|.+|... +.+..+.+||...+......+..+. .|....|+|.+..++ +...+.+.+|+
T Consensus 159 ~vaFsk-----~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne-----~v~~a~FHPtd~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 159 CVAFSK-----INGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNE-----VVFLATFHPTDPNLIITCGKGHLYFWT 228 (626)
T ss_pred eeeecc-----cCCCceEEEecCCCccccchhhchhhhccCcceeccc-----eEEEEEeccCCCcEEEEeCCceEEEEE
Confidence 999977 3445565554 4456799999998877666665554 788899999987766 55889999999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
.+.+.- .+....+++. ....|.|++|.+++ -+++|..+|.|.||+..+.+..+....|.+.|.+++...+|..
T Consensus 229 ~~~~~l-~k~~~~fek~---ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl- 301 (626)
T KOG2106|consen 229 LRGGSL-VKRQGIFEKR---EKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL- 301 (626)
T ss_pred ccCCce-EEEeeccccc---cceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-
Confidence 876432 2222222221 12679999999844 5899999999999999988887777799999999999999975
Q ss_pred EEEecCCCeEEEEeCCCCceE----------EEE--------------------------eecccCCccceEEEEEcCCC
Q 014125 281 YTGGRKDPYILCWDLRKAVQV----------VYK--------------------------LYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~----------~~~--------------------------~~~~~~~~~~v~~~~~~~~~ 324 (430)
++++ .|..|..||-.-.+.. ... .....+|....+.++.+|+.
T Consensus 302 lSGg-KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 302 LSGG-KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred eecC-ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 4587 9999999983211000 000 01113567788899999999
Q ss_pred CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED------------------- 385 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~------------------- 385 (430)
..+++++.|+.+++|+ ..+++.+.. -..++.++.|+|.| .+|.|...|...|-|.+.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys 456 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS 456 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence 9999999999999999 455555444 45688899999999 899999999888875433
Q ss_pred -----cccccCCCcEEEEeeccccccc-ccCCCCcceee
Q 014125 386 -----LHLSGDENCVSVWSFLYASMME-NADGINGCEFN 418 (430)
Q Consensus 386 -----l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~~~~ 418 (430)
|+.+++|+.|++|.++.++... ...-+.+.+++
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 8888999999999998665543 33334443443
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.1e-26 Score=189.67 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=216.3
Q ss_pred ceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 73 SSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 73 ~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
.+++++.. ...+.+|.+....... ....-.++|.+++- +|+|.+|+.|+..|.|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-----------------q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lY 106 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-----------------QYIVLPGPVHALAS-------SNLGYFLLAGTISGNLY 106 (476)
T ss_pred hheeeecccCccccccccCchhhhh-----------------hhcccccceeeeec-------CCCceEEEeecccCcEE
Confidence 46666544 3468888876443221 12223367888877 77899999998999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc-cccccCCCCCCCcceEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~ 229 (430)
+|.+.+|..+..+..|-. .|+++.|+.|+.+|++ |.||.|.+|.+..--..... .......+..|.-+|+.+.
T Consensus 107 lWelssG~LL~v~~aHYQ-----~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ 181 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQ-----SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ 181 (476)
T ss_pred EEEeccccHHHHHHhhcc-----ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence 999999999988877765 9999999999999995 59999999987542211111 1233445678999999999
Q ss_pred EcCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce--------
Q 014125 230 FSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-------- 300 (430)
Q Consensus 230 ~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-------- 300 (430)
..+. ....+++++.|.++++||+..+..+.++. ....+.+++.+|-+..+++|+ .+|.|.+.++.....
T Consensus 182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred ecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcCCccccccccc
Confidence 9873 25689999999999999999998887776 567899999999999999999 999999988765431
Q ss_pred ----EEEEeecccCCcc--ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe-e
Q 014125 301 ----VVYKLYRSSEHTN--QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS-S 373 (430)
Q Consensus 301 ----~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 373 (430)
.........+|.+ .|+|++++-||..|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+....+ .
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~ 339 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEH 339 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccc
Confidence 1111222346666 99999999999999999999999999999999999998778899999997765544332 2
Q ss_pred CCceeeecCCCcccc
Q 014125 374 GHRRFPVDDFEDLHL 388 (430)
Q Consensus 374 ~d~~~~vw~~~~l~~ 388 (430)
....+..|+....++
T Consensus 340 ~~ps~~~~~lkr~i~ 354 (476)
T KOG0646|consen 340 KQPSLPNPHLKRMIP 354 (476)
T ss_pred cCccCCchHhhccCC
Confidence 233444554444333
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3e-24 Score=191.71 Aligned_cols=308 Identities=16% Similarity=0.243 Sum_probs=235.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
|.+++++..++.+.||+..+.+....+. .......+ ..|.++.- | +.-=+.++.|+..|.++
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~-----------~~~~~~~~-~~Ital~H-P-----~TYLNKIvvGs~~G~lq 185 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQ-----------STFLKVEG-DFITALLH-P-----STYLNKIVVGSSQGRLQ 185 (910)
T ss_pred cceEEEEEccCcEEEEEecccccccccc-----------ceeeeccC-CceeeEec-c-----hhheeeEEEeecCCcEE
Confidence 5667777778888888877541110000 01111122 22666652 2 22236799999999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
+|++.+++.+.+++.... .|+++.-+|-=..++.| .+|+|.+++++.... ...+....+.|++++|
T Consensus 186 l~Nvrt~K~v~~f~~~~s-----~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki--------l~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFS-----RITAIEQSPALDVVAIGLENGTVIIFNLKFDKI--------LMSFKQDWGRVTSLSF 252 (910)
T ss_pred EEEeccCcEEEEeccccc-----ceeEeccCCcceEEEEeccCceEEEEEcccCcE--------EEEEEccccceeEEEe
Confidence 999999999999998876 89999999998899977 899999999987422 1112223578999999
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce---------
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ--------- 300 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~--------- 300 (430)
.-||..++++|+..|.+.+||++..+....+. .|.+.|....|.|....+++++ .|+.+++|=..++..
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeecc
Confidence 99999999999999999999999888776665 7889999999999888888888 888887773321000
Q ss_pred -----------------E------------------------------------------------E-------------
Q 014125 301 -----------------V------------------------------------------------V------------- 302 (430)
Q Consensus 301 -----------------~------------------------------------------------~------------- 302 (430)
. .
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 0 0
Q ss_pred -------------EE------------e--ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc---cc
Q 014125 303 -------------YK------------L--YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF---QA 352 (430)
Q Consensus 303 -------------~~------------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~ 352 (430)
.. + .........+++++.++.|++.+.|...|.|-+|++.+|-....+ +.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 00 0 000012256788999999999999999999999999999888888 58
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-----------------------------------------------
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED----------------------------------------------- 385 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~----------------------------------------------- 385 (430)
|.++|++++....++.+++++.+|.+.+|+...
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 999999999999999999999999999996543
Q ss_pred -------------------cccccCCCcEEEEeecccccccccCC
Q 014125 386 -------------------LHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 386 -------------------l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
|++++.|++||+||+.++.++..+.-
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 88889999999999999888776644
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.7e-25 Score=173.87 Aligned_cols=237 Identities=19% Similarity=0.279 Sum_probs=189.2
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRV 198 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v 198 (430)
...|.++.| +|.++.|++++.||++++||.........++.. .++.+++|.++.+.+.++.||.|+.
T Consensus 13 ~d~IS~v~f-------~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~------~plL~c~F~d~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 13 EDGISSVKF-------SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG------APLLDCAFADESTIVTGGLDGQVRR 79 (323)
T ss_pred hhceeeEEE-------cCcCCcEEEEeccCcEEEEeccchhhhhheecC------CceeeeeccCCceEEEeccCceEEE
Confidence 367999999 567788999999999999999888655555433 3999999998777777889999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
+|+.++.. .....|..+++++.+.+ ..+.+++|+.|++|++||.+.......+. ....|.++.. .|.
T Consensus 80 ~Dln~~~~---------~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~ 146 (323)
T KOG1036|consen 80 YDLNTGNE---------DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGN 146 (323)
T ss_pred EEecCCcc---------eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCC
Confidence 99987432 12357888999999998 77899999999999999999765555555 3447888876 567
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----Ceeccccccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQAAA 354 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~ 354 (430)
.|++++ .|..+.+||+++...... .....-.-.+.++++-|++.-.++++-||+|.+=.++.. +....|+.|.
T Consensus 147 ~LvVg~-~~r~v~iyDLRn~~~~~q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 147 RLVVGT-SDRKVLIYDLRNLDEPFQ--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred EEEEee-cCceEEEEEcccccchhh--hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 899988 899999999998765431 222345567889999998888999999999998777765 3345566664
Q ss_pred C---------CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 355 D---------TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 355 ~---------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
. +|++|+|+|-...|+||+.||.|.+||..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 3 79999999999999999988888888654
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=175.34 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=199.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
...+|++.|++++| +.||+.|++++.|++|++|++..-... +.++..- .-...+.+.|.||-+-++.+
T Consensus 81 ~LKgH~~~vt~~~F-------sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv---e~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAF-------SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV---EYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhccCCceeeeEE-------cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc---cCCCceEEEECCCcceEEEE
Confidence 44568899999999 889999999999999999998763211 1111111 11245689999999877733
Q ss_pred --cCCeEEEEEcCCCCCccccc-cccc---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 192 --YNKSVRVFDVHRPGRDFEKY-STLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 192 --~d~~i~v~d~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
...++++|.+.......-.. .... .....|...+..+-... +..++++++.|..|.+|+++ |+.+..+....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 77899999876432211000 0001 11234555566666655 78899999999999999998 88888888777
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC----ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA----VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
..-+..+.||+|+++++++ .-..|++|..--. .+...+.+...+|.+.|..++|+++.+.+++.+.||.++|||+
T Consensus 229 ~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 7788899999999999999 8899999986322 1223344556899999999999999999999999999999998
Q ss_pred CC-------CCeecccc----cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccC
Q 014125 342 QT-------GKWISGFQ----AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 342 ~~-------~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
+- .+.+++.. ...+....++.+|+|+.||.+. ...++++.-+.++....+.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~------------------gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF------------------GSDLKVFASEDGKDYPELE 369 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec------------------CCceEEEEcccCccchhHH
Confidence 62 22233321 1222345899999999999875 3567777777777776666
Q ss_pred CCCcceeeeecc
Q 014125 411 GINGCEFNCQSE 422 (430)
Q Consensus 411 ~~~~~~~~~~~~ 422 (430)
.+.+..+.|+..
T Consensus 370 ~~h~~~Is~is~ 381 (420)
T KOG2096|consen 370 DIHSTTISSISY 381 (420)
T ss_pred HhhcCceeeEEe
Confidence 655545555543
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.8e-25 Score=184.64 Aligned_cols=264 Identities=16% Similarity=0.276 Sum_probs=189.7
Q ss_pred eEEEECc-------CCceEEEecCCCeEEEEeCCCCCCcccccccc-ccc---ccCcccceeeecCCCeeeeeeeccccC
Q 014125 64 KGIKWSP-------DGSSFLTSSEDKTLRIFSLPENGISYDVNACS-LAK---DQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 64 ~~~~~sp-------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.|+.|.. .|+|+|.|+.|..|.|||+.-..........- ... ...........+|...|.+++|+..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-- 254 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-- 254 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc--
Confidence 4666633 36899999999999999987432221111000 000 0001111123357778889998543
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
-.+.||+||.|.+|++||+.++++...+..+.. .|.++.|+|... +|++ +.|++|.+.|.+.++.....
T Consensus 255 ----~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 255 ----FRNVLASGSADKTVKLWDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ----cceeEEecCCCceEEEEEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 346899999999999999999999999987665 999999999874 4444 48999999999864332211
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
. .-.+.|-.++|.|.....+++++.||+|+-+|+|.. +++.+++.|.++|.+|++++.-..+++.++.|+.
T Consensus 326 w--------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 326 W--------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred E--------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 1 123568999999988999999999999999999986 8999999999999999999877665555559999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeec
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
|++|++........... ...-+...|+++.|+- -.++.|+..+.++|||+.+...+.
T Consensus 398 Vklw~~~~~~~~~v~~~--~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEH--SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EEEEeecCCCCcccccc--cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 99999976543211111 1112235667777765 457888888899999998876543
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=3.1e-25 Score=192.46 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=112.3
Q ss_pred cCCCeEEEEEcCCcee-----eEEeeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEE---EEeecccCCc
Q 014125 242 SYSQTSAIYREDNMEL-----LYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVV---YKLYRSSEHT 312 (430)
Q Consensus 242 ~~dg~v~~~d~~~~~~-----~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~ 312 (430)
+..|.|-||+++.... +-.+. ....|+.+.|+| |...|++++ .||.|++|.+..+.... ........|.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~-ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVAT-DDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecc-cCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 4568888998875322 11121 345799999999 566899999 99999999987543211 1111225788
Q ss_pred cceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 313 NQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 313 ~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..|+++.|+|- ...|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+|+.+.||+++|+..
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 99999999995 468999999999999999999999999999999999999999999999999999999943
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.1e-23 Score=184.08 Aligned_cols=263 Identities=13% Similarity=0.136 Sum_probs=183.6
Q ss_pred ecccCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+.+|. .+.+++|+|+|+.+ ++++.++.|++||..+++....+ .....+..++|
T Consensus 26 ~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~------ 80 (300)
T TIGR03866 26 TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL------------------PSGPDPELFAL------ 80 (300)
T ss_pred EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec------------------cCCCCccEEEE------
Confidence 334443 36789999999876 56778999999999876432111 11122445667
Q ss_pred cCCCCceEEE-EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC-CeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-~~i~v~d~~~~~~~~~~ 210 (430)
+|+++.+++ ++.++.+++||+.+++.+..+.... .+.+++|+|++.+++++ .+ ..+.+||...... .
T Consensus 81 -~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~-- 150 (300)
T TIGR03866 81 -HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-V-- 150 (300)
T ss_pred -CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-E--
Confidence 677876655 4568999999999887766665322 45689999999999865 43 4577788765311 0
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-----c--CeEEEEEccCCCEEEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----G--GVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~~~ 283 (430)
... ........++|+|++..+++++..++.|++||+++++.+..+..+. . ....++|+|++++++++
T Consensus 151 -~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 151 -DNV-----LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred -EEE-----EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 011 0112356789999655444666679999999999988766654221 1 23568899999987665
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
...++.+.+||+++.+... .. .+...+.+++|+|+|++|+++ +.+|.|.+||+.+++.+..++.. ...+++++
T Consensus 225 ~~~~~~i~v~d~~~~~~~~-~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLD-YL----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred cCCCCeEEEEECCCCcEEE-EE----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEe
Confidence 4367789999998764332 22 123468899999999999876 46899999999999999988754 55588888
Q ss_pred cC
Q 014125 363 HP 364 (430)
Q Consensus 363 ~~ 364 (430)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 75
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-26 Score=201.14 Aligned_cols=247 Identities=16% Similarity=0.231 Sum_probs=189.7
Q ss_pred eeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+..+.|+. +.++|||++..|.|.+||+.... +......+-.|...+.++.|++. ..++|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------rnk~l~~f~EH~Rs~~~ldfh~t------ep~il 149 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------RNKLLTVFNEHERSANKLDFHST------EPNIL 149 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc--------------cchhhhHhhhhccceeeeeeccC------CccEE
Confidence 55677875 57899999999999999997521 11122244557789999999765 45699
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++|+.||.|++||++..+...++..... .|..+.|+|.. ..++++ ..|.+.+||++.+.. ....+.
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~ 217 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------CEKKLT 217 (839)
T ss_pred EecCCCceEEEEeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchh-------HHHHhh
Confidence 9999999999999999988888777544 89999999865 444444 789999999998644 333347
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEec--CCCeEEEEeCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGR--KDPYILCWDLR 296 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--~d~~i~i~d~~ 296 (430)
.|.++|.|+.|+| ++.+||+|+.|+.|+|||+.+.+......- ...++.+++|-|...+.++.++ .|-.|+|||++
T Consensus 218 AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 218 AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 8999999999999 888999999999999999987654333222 3468999999998776554432 57789999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCC
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
.+.-+.. ....|...++.++|.. |...+.+++.||.|..-..++..
T Consensus 297 RPYIP~~---t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 297 RPYIPYA---TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cccccce---eeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 7644433 3367899999999965 34578899999988766665543
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-24 Score=170.63 Aligned_cols=254 Identities=15% Similarity=0.247 Sum_probs=185.5
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC----ceeeeeecccccccccceEEEEECCC--CcE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPT--GTK 187 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 187 (430)
+...|..-|.++.| .+.|+.+|+|+.|++|+|||.... .+....+.|.. .|..+.|.+. |+.
T Consensus 8 i~s~h~DlihdVs~-------D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-----Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSF-------DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-----SIWRVVWAHPEFGQV 75 (361)
T ss_pred cccCCcceeeeeee-------cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-----cEEEEEecCccccce
Confidence 44456678999999 678999999999999999997544 23445555555 8999999654 678
Q ss_pred EE-EEcCCeEEEEEcCCCCCcccc-cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCc------eee
Q 014125 188 IF-AGYNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNM------ELL 258 (430)
Q Consensus 188 l~-~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~------~~~ 258 (430)
++ ++.|+++.||.-......... .-.....+......|+.+.|.|.. +-.+|+++.||.++||+.... ...
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 88 569999999986421111100 001112234456789999999954 557899999999999986543 222
Q ss_pred EEee-------ccccCeEEEEEccC---CCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 259 YVLH-------GQEGGVTHVQFSRD---GNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 259 ~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
..++ .+..+..|+.|+|. ..+|++++ .+ +.+.||................+|..+|+.++|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 35567889999974 45777776 44 489999988776566666666799999999999997
Q ss_pred -C---CEEEEEccCCcEEEEEcCCC--------------------CeecccccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 324 -G---RHLGTGGQDGLVHIYDLQTG--------------------KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 324 -~---~~l~~~~~dg~i~vwd~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
| ..||+++.|| |+||.+... +.+..+..|.+.|..+.|+-.|..|++.+.||.++
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 2 4699999999 999998731 23455678999999999999999998887655555
Q ss_pred ec
Q 014125 380 VD 381 (430)
Q Consensus 380 vw 381 (430)
+|
T Consensus 314 LW 315 (361)
T KOG2445|consen 314 LW 315 (361)
T ss_pred eh
Confidence 55
No 139
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=178.28 Aligned_cols=307 Identities=12% Similarity=0.130 Sum_probs=228.6
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.+|.+.|++|.||.++++||+|+.|..+++|+++..-.. .....+....-+|...|.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------k~~KPI~~~~~~H~SNIF~L~F------ 113 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------KTPKPIGVMEHPHRSNIFSLEF------ 113 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh----------cCCCCceeccCccccceEEEEE------
Confidence 467899999999999999999999999999999998742110 0111222233456678999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
......+++|..+++|...|+++.+.+..+.... ..+.|+.+..+|....++ ++.++.|.+||++........+.
T Consensus 114 -~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~---~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 114 -DLENRFLYSGERWGTVIKHDIETKQSIYVANENN---NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred -ccCCeeEecCCCcceeEeeecccceeeeeecccC---cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence 6677899999999999999999988776665433 334899999999887777 56899999999987543332221
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEE------eeccccCeEEEEEccCCCEEEEEec
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYV------LHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
. .........+.|+|....+|++.+..+-+-+||.+.... +.. +......-.++.|+|+|..+++.-
T Consensus 190 ~-----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR- 263 (609)
T KOG4227|consen 190 P-----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR- 263 (609)
T ss_pred e-----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-
Confidence 1 233456788999998899999999999999999886432 211 221222347889999999999887
Q ss_pred CCCeEEEEeCCCCceEEEEeeccc---CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC------------------
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSS---EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG------------------ 344 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------ 344 (430)
....-.+||+-.....+.+..... .....+.+++|-.+ .-+++|+.+-.|++|.+...
T Consensus 264 R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~ 342 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS 342 (609)
T ss_pred ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence 666777889887655544432111 12345667888755 34999999999999998531
Q ss_pred -----CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccc
Q 014125 345 -----KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLH 387 (430)
Q Consensus 345 -----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~ 387 (430)
+.+..+++|.+-+..+.|+|...+|++++..+.+++|....+.
T Consensus 343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred hheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCC
Confidence 2244678999999999999999999999999999999665544
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-23 Score=181.30 Aligned_cols=284 Identities=18% Similarity=0.200 Sum_probs=223.1
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.--..+|++++|+.+.+.||.+-.||.|.||++..+ ......+..+....|.+++|.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------w~~~~vi~g~~drsIE~L~W~------ 78 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------WFLEPVIHGPEDRSIESLAWA------ 78 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------ceeeEEEecCCCCceeeEEEc------
Confidence 33444567999999999999999999999999999753 122233444566789999994
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++..|.+.+.+|.|.-||+.+++....+..... .|++++.+|.+..++.| .||.+..++...+.- +
T Consensus 79 --e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I------~ 145 (691)
T KOG2048|consen 79 --EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGPDKI------T 145 (691)
T ss_pred --cCCeEEeecCCceEEEEecccCceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCCceE------E
Confidence 467899999999999999999999888887776 99999999999999966 889777776654221 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--------ccccCeEEEEEccCCCEEEEEec
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--------GQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
....+....+.+.+++|+| .+..++.|+.||.|++||..++..+.... ....-|.++.|-.++ .|++|.
T Consensus 146 ~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD- 222 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD- 222 (691)
T ss_pred EEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-
Confidence 2222334467899999999 66689999999999999999987665221 122347788887665 578888
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe----ecccccccCCeeEEE
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW----ISGFQAAADTVNGFS 361 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~ 361 (430)
..|+|.+||...+... .....|...|.+++..+++.++++++.|+.|.-|...+.+. ......|...|.+++
T Consensus 223 S~G~V~FWd~~~gTLi----qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLI----QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred CCceEEEEcccCcchh----hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence 8999999999887432 33367889999999999999999999999999998876543 233456888999999
Q ss_pred EcCCCcEEEEeeCCceeeec
Q 014125 362 FHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 362 ~~~~~~~l~s~~~d~~~~vw 381 (430)
..++ .|++|+.|..+.+-
T Consensus 299 v~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 299 VIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred eecc--eEEecceeeEEEEc
Confidence 8876 89999999998886
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=180.79 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=177.2
Q ss_pred ceEEEEe-CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 139 CVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 139 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+++++. .-..+.+|.+........... .++++.+++-+|.|.++++| -.+.|++|.+.++ .+..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v-----~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV-----LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLN 117 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcc-----cccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHH
Confidence 3555554 345799999876544432111 22379999999999999987 8999999999884 3333
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---------CceeeEEeeccccCeEEEEEccC--CCEEEEEec
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---------NMELLYVLHGQEGGVTHVQFSRD--GNYLYTGGR 285 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 285 (430)
...+|-..|+++.|+- ++.+|++|+.||.|.+|++. +-++...+..|.-+|+.+...+. ..+|++++
T Consensus 118 v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS- 195 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS- 195 (476)
T ss_pred HHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-
Confidence 3467888899999999 67799999999999999853 33678889999999999998765 35899999
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----------------Ceecc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----------------KWISG 349 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------------~~~~~ 349 (430)
.|.++++||+..+...... .....+.+++.+|.++.+++|+++|.|.+.++... ..+..
T Consensus 196 ~D~t~k~wdlS~g~LLlti-----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTI-----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred CCceEEEEEeccceeeEEE-----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 9999999999988443322 34677899999999999999999999999887532 23556
Q ss_pred cccccC--CeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 350 FQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+|.+ .|++++.+-||.+|++|+.||.++|||.
T Consensus 271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 778888 9999999999999999987666666543
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.5e-26 Score=203.23 Aligned_cols=221 Identities=19% Similarity=0.295 Sum_probs=193.2
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.++.+++|+.|-.+-+|.+..-..+..+..|.. +|.++.|+++..+|++| .+|+|++||+... ...
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-----pIeSl~f~~~E~LlaagsasgtiK~wDleeA--------k~v 105 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-----PIESLTFDTSERLLAAGSASGTIKVWDLEEA--------KIV 105 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCC-----cceeeecCcchhhhcccccCCceeeeehhhh--------hhh
Confidence 456899999999999999887776666777766 99999999999999866 8999999999863 222
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
..+.+|...+.++.|+| -+.+++.|+.|+.+++||.+...+.+.+.+|...+..+.|+|+|++++.++ .|..+++||+
T Consensus 106 rtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~ 183 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDL 183 (825)
T ss_pred hhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecc
Confidence 34578889999999999 666889999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
..++-. ..+..|...+.++.|+|..-++++|+.|++|++||+++.+.+.........|.+.+|+|++..+.+|...
T Consensus 184 ~agk~~----~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLS----KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccc----cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 877422 3336788999999999999999999999999999999999988888888899999999999999888654
Q ss_pred c
Q 014125 376 R 376 (430)
Q Consensus 376 ~ 376 (430)
.
T Consensus 260 s 260 (825)
T KOG0267|consen 260 S 260 (825)
T ss_pred h
Confidence 3
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.3e-25 Score=178.13 Aligned_cols=260 Identities=16% Similarity=0.243 Sum_probs=183.1
Q ss_pred ecccCCCceeEEEECcCC--ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 55 TSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+|.+.++-+.-++-+ .+.|+-+..|.|+||++... +.++.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~-----------------------------l~~l~------ 190 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH-----------------------------LNALS------ 190 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhh-----------------------------hhhhc------
Confidence 455777788888777754 46666777889999988632 11111
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
.| .+.+. + ...+++.++..|.. .-++++|||-.. .+++| .-+.|++|...++.-
T Consensus 191 --~~--~~~~~----------~-s~~~Pl~t~~ghk~-----EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W---- 246 (440)
T KOG0302|consen 191 --EP--GLEVK----------D-SEFRPLFTFNGHKG-----EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW---- 246 (440)
T ss_pred --Cc--ccccc----------c-cccCceEEecccCc-----cceeeecccccccccccCccccceEeeeeccCce----
Confidence 00 00100 0 23445556665554 678999999432 23334 678899999877322
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
..-...+.+|...|-.++|+|...++|++|+.||+|+|||++.+. .....+.|.+.|+.|.|+....+|++|+ .||
T Consensus 247 -~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~-DdG 324 (440)
T KOG0302|consen 247 -KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG-DDG 324 (440)
T ss_pred -eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC-CCc
Confidence 222334567999999999999999999999999999999999872 2233478999999999999988888888 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCe----------------ecccc
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKW----------------ISGFQ 351 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----------------~~~~~ 351 (430)
+++|||+|+.+.. .....+..|..+|+++.|+|.. ..|++++.|..|.+||+....- .+-+-
T Consensus 325 t~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 325 TLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred eEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 9999999976432 2334446799999999999964 5688889999999999863211 11122
Q ss_pred cccC--CeeEEEEcCCCc-EEEEeeCCc
Q 014125 352 AAAD--TVNGFSFHPFLP-MAASSSGHR 376 (430)
Q Consensus 352 ~~~~--~v~~~~~~~~~~-~l~s~~~d~ 376 (430)
.|.+ .+..+.|++.-+ +|++.+.||
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEecccc
Confidence 3433 688899999776 566655444
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.4e-24 Score=187.01 Aligned_cols=265 Identities=20% Similarity=0.195 Sum_probs=201.4
Q ss_pred cccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccce
Q 014125 97 DVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA 176 (430)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v 176 (430)
.+....-...-......+..+|.+.|.++.. .|.|..|++|+.||+|+||.+.+|.++..+.... .|
T Consensus 378 kLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSv-------dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~------~I 444 (733)
T KOG0650|consen 378 KLPSPKDLRPFPTRCALVYRGHTGLVRSISV-------DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS------EI 444 (733)
T ss_pred cCCChhhcCCCcceeeeeEeccCCeEEEEEe-------cCCcceeeecCCCCcEEEEEeecceEEEEEeecc------ee
Confidence 3333333333334445567789999999998 6789999999999999999999999999988765 89
Q ss_pred EEEEECCCCc--EEEEEcCCeEEEEEcCCCCCc-----ccccc-------------c--------cc---CCCCCCCcce
Q 014125 177 FSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRD-----FEKYS-------------T--------LK---GNKEGQAGIM 225 (430)
Q Consensus 177 ~~~~~~~~~~--~l~~~~d~~i~v~d~~~~~~~-----~~~~~-------------~--------~~---~~~~~~~~~v 225 (430)
.|++|+|.+. .|+++.+..+.|.+..-+... ...+. . .. ...-.|...|
T Consensus 445 ~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 445 RSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 9999999875 444565555666554322100 00000 0 00 0112456789
Q ss_pred EEEEEcCCCCceEEEecCC---CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 226 SAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
..+.|+. .+.+|++...+ ..|.|+++.......-|....+.|.++.|+|...+|++++ ...|++||+... ..+
T Consensus 525 ~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kq-elv 600 (733)
T KOG0650|consen 525 RQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQ-ELV 600 (733)
T ss_pred ceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHH-HHH
Confidence 9999999 56677776553 5688999987766666665678899999999999999886 789999999874 332
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+.+ ......|..++.+|.|..|+.|+.|+.+..+|+.- .++.+.+..|...+++++||+..+++++|+.||.+.|+
T Consensus 601 KkL---~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 601 KKL---LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HHH---hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 222 34566789999999999999999999999999984 47888999999999999999999999999999999987
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=191.54 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=192.8
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEEEEcCC
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK 194 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 194 (430)
..|....+.++| .++|..|++++.||.|++|+.... +....+.... ..|.+++.... .+++++.++
T Consensus 10 yaht~G~t~i~~-------d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g-----~~v~~ia~~s~-~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICY-------DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG-----ELVSSIACYSN-HFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEE-------cCCCCEEEEecCCCceEEeecCCcccCCchhhccC-----ceeEEEeeccc-ceEEeeccc
Confidence 456667888999 779999999999999999997655 2222222122 26667765433 444466999
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
+|.+|.+..+... ..+..-.-++++++|+. ++.++|.|+.|-.|++.++.+......+.+|.++|.++.|+
T Consensus 77 tv~~y~fps~~~~--------~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 77 TVLRYKFPSGEED--------TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEEeeCCCCCcc--------ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 9999999774331 12233456799999999 77899999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc----c-CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS----S-EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
|.+.+|++++ .||.|++||+.++.... .+... . .....+..++|+|+|..++....|+.|++|+..+++....
T Consensus 148 p~~~fLAvss-~dG~v~iw~~~~~~~~~-tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 148 PKGNFLAVSS-CDGKVQIWDLQDGILSK-TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred CCCCEEEEEe-cCceEEEEEcccchhhh-hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 9999999999 99999999998764321 11110 1 1144567899999988888888999999999999998877
Q ss_pred ccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 350 FQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 350 ~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+.. +...+..+.|+|.|+|||+++-||.|.|||.+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 753 44459999999999999999999888888776
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=5.7e-25 Score=170.77 Aligned_cols=291 Identities=12% Similarity=0.130 Sum_probs=196.6
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++++|.+.|+++.|-.++ +|.+|..-|.|.+|++.+.... ......++..|..+.-.|
T Consensus 8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~----------------~~~r~~g~~~it~lq~~p---- 66 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL----------------PLIRLFGRLFITNLQSIP---- 66 (323)
T ss_pred eEeccccchheehhhccch-hhhcccccceEEEEEeecCccc----------------hhhhhhccceeeceeecC----
Confidence 3577999999999998876 4889999999999999876432 223334556777776533
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-----CCc---EEEEE--c-CCeEEEEEcC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-----TGT---KIFAG--Y-NKSVRVFDVH 202 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~l~~~--~-d~~i~v~d~~ 202 (430)
+..|.+-++|+.+.+|++.-+..+..-.. .+.++.|.+ .++ .++.. . ...+.+-|..
T Consensus 67 ----~d~l~tqgRd~~L~lw~ia~s~~i~i~Si--------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 67 ----NDSLDTQGRDPLLILWTIAYSAFISIHSI--------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred ----CcchhhcCCCceEEEEEccCcceEEEeee--------eccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 35688899999999999987655443321 233333322 111 11111 0 0012222211
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCce----------eeEEeeccccCeEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME----------LLYVLHGQEGGVTH 270 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~----------~~~~~~~~~~~i~~ 270 (430)
. . ...........+..+.+.+..+.... ..++++|.++|.|.+||+.++. .......|..+|.+
T Consensus 135 ~---~-tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 135 D---T-TQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred c---c-ceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 1 0 01111122223445667777754432 3467788899999999999873 33334568899999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.|.+.-..=++++ .+..+..|.+.........-....-....+..+.+-||++.+|+++.|++|+||..++..++..+
T Consensus 211 ldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 211 LDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 99987655556677 78888899887542111111111123345777899999999999999999999999999999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.|...|++++|+|+.+++|+++.|++|.+|+
T Consensus 290 kyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 99999999999999999999998766666664
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.6e-23 Score=164.23 Aligned_cols=215 Identities=19% Similarity=0.300 Sum_probs=162.3
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----------eeeeeecccccccccceEEEEECCCCc
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGT 186 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (430)
.|++.|.++..-+. .|+++++|+.||.|.+||++... .++.........|.-.|.++.|-|-..
T Consensus 41 ~HgGsvNsL~id~t------egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLT------EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred cCCCccceeeeccc------cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 46677777776543 68899999999999999997642 122222223334566889999988654
Q ss_pred EEE--EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCceeeEEee
Q 014125 187 KIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 187 ~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~~~~~~~ 262 (430)
-++ ++.|.++++||.++-... ..+ .-++.|.+-+++|-. ..++|+|..+-.|++-|+.+|.....+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a----~~F-----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEA----VDF-----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred ceeecccccceEEEeecccceee----EEe-----ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 443 458999999999873221 111 123446666666632 3478899999999999999999999999
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe-----------ecccCCccceEEEEEcCCCCEEEEEc
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL-----------YRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+|.+.|.++.|+|...++++.++.||.|++||++........+ .....|.+.+..++|+.+|.++++.+
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 9999999999999999877766699999999998652221111 12356888999999999999999999
Q ss_pred cCCcEEEEEcCCCCe
Q 014125 332 QDGLVHIYDLQTGKW 346 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~ 346 (430)
.|.++++|+..+|+.
T Consensus 266 td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRN 280 (397)
T ss_pred CccceEEeecccCcc
Confidence 999999999998764
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.2e-24 Score=175.68 Aligned_cols=229 Identities=15% Similarity=0.248 Sum_probs=180.4
Q ss_pred ceEEEEECC-------CCcEEEEE-cCCeEEEEEcCCCCCccccc-------------ccccCCCCCCCcceEEEEEcCC
Q 014125 175 AAFSVAFNP-------TGTKIFAG-YNKSVRVFDVHRPGRDFEKY-------------STLKGNKEGQAGIMSAIAFSPT 233 (430)
Q Consensus 175 ~v~~~~~~~-------~~~~l~~~-~d~~i~v~d~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~ 233 (430)
...|+.|.. .|.++|.| .+..|.|||+.-.......+ ........+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345666643 25788866 89999999987543322111 0111123478888999999998
Q ss_pred CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC-CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCc
Q 014125 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 234 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
-.++||+|+.|.+|++||+.++++...+..|.+.|.++.|+|.. ..|++|+ .|++|.+.|.|........ -...
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs-~D~~V~l~D~R~~~~s~~~----wk~~ 329 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS-YDGTVALKDCRDPSNSGKE----WKFD 329 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc-ccceEEeeeccCccccCce----EEec
Confidence 88999999999999999999999999999999999999999965 4666777 9999999999964332222 1345
Q ss_pred cceEEEEEcCCC-CEEEEEccCCcEEEEEcCCC-CeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCc----
Q 014125 313 NQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTG-KWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFED---- 385 (430)
Q Consensus 313 ~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~---- 385 (430)
+.|-.++|.|.. ..++++..||+|+-+|++.. +++.++++|.++|.+|++++.-+ +|+|++.|+.+++|+...
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 678889999975 45778889999999999965 99999999999999999998665 889999999999994321
Q ss_pred ------------------------cccccCCCcEEEEeecccccccc
Q 014125 386 ------------------------LHLSGDENCVSVWSFLYASMMEN 408 (430)
Q Consensus 386 ------------------------l~~~~~d~~i~~w~~~~~~~~~~ 408 (430)
++.+|..+.+++||+........
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 77888888999999987665443
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=172.94 Aligned_cols=238 Identities=19% Similarity=0.281 Sum_probs=183.8
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~ 195 (430)
+.|+++.|+| ...+|++++.||++++|.+... ..++.+..... +|.+.+|.|+|. .++ +|....
T Consensus 214 ~~I~sv~FHp-------~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f-----Pi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 214 GGITSVQFHP-------TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF-----PIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CCceEEEecC-------CCceEEEecCCCcEEEEEecCccChhheeeeeccC-----ccceeeecCCCceEEEecccceE
Confidence 5799999955 5679999999999999998653 23333333333 899999999998 555 558889
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
++.||+.+... ..+..........+....++| .+++|+..+..|.|.+....+++.+..++ -.+.|..++|+.
T Consensus 282 ~ysyDle~ak~-----~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS 354 (514)
T KOG2055|consen 282 LYSYDLETAKV-----TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS 354 (514)
T ss_pred EEEeecccccc-----ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec
Confidence 99999976422 111111111234577888999 66699999999999999999999998887 578899999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC------CCeecc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT------GKWISG 349 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~ 349 (430)
+++.|++++ .+|.|.+||++...... .... ...-.-++++.+++|.|||+|+..|.|.|||.++ .+++..
T Consensus 355 dsk~l~~~~-~~GeV~v~nl~~~~~~~-rf~D--~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 355 DSKELLASG-GTGEVYVWNLRQNSCLH-RFVD--DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred CCcEEEEEc-CCceEEEEecCCcceEE-EEee--cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 999999998 89999999999884332 3221 1222346788899999999999999999999763 567777
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeC--Cceeee
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSG--HRRFPV 380 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~--d~~~~v 380 (430)
+..-...|+++.|+|+.++||.+|. +..+++
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 7777789999999999999998876 344444
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.6e-25 Score=195.43 Aligned_cols=240 Identities=18% Similarity=0.290 Sum_probs=203.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+..|...|.++..-..++.+++|+.|..+.+|.+...... .....|..+|.++.|
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------~S~~~hespIeSl~f---- 78 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-----------------TSLTGHESPIESLTF---- 78 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-----------------heeeccCCcceeeec----
Confidence 34567789999999998778899999999999999988654221 124667789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+++..+|++|+.+|+|++||++.++.++++.++.. .+.++.|+|-+.+.+.| .|..+.+||++..+
T Consensus 79 ---~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G----- 145 (825)
T KOG0267|consen 79 ---DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKKG----- 145 (825)
T ss_pred ---CcchhhhcccccCCceeeeehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhccC-----
Confidence 66788999999999999999999998888887766 88899999999999855 89999999998633
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
+...+.+|...+..+.|+| ++.+++.|++|.++++||+..++....|..|++.+.++.|+|..-.++.|+ .|+++
T Consensus 146 ---c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv 220 (825)
T KOG0267|consen 146 ---CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTV 220 (825)
T ss_pred ---ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCcee
Confidence 3333466888899999999 778999999999999999999999999999999999999999988888888 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
++||+++.... .........|.+..|+|++..+++|....
T Consensus 221 ~f~dletfe~I----~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 221 RFWDLETFEVI----SSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeccceeEEe----eccCCccCCceeeeecCCceeeecCchhh
Confidence 99999875322 22244577899999999999999887764
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=179.94 Aligned_cols=302 Identities=18% Similarity=0.249 Sum_probs=202.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.++.+..|.+.|..+.|-|....|++++.|.++++||+.+..+. -..+.++|...|.++||.|.
T Consensus 92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------G~~~~~GH~~SvkS~cf~~~- 155 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------GGRLNLGHTGSVKSECFMPT- 155 (720)
T ss_pred hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------cceeecccccccchhhhccC-
Confidence 45678899999999999996679999999999999999876442 12257788899999999876
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCce-------eeeeeccc---------------ccccccceEE---EEECCCCc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYD---------------AVDEITAAFS---VAFNPTGT 186 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~---------------~~~~~~~v~~---~~~~~~~~ 186 (430)
+...|++|+.||.|.|||+.-... ......+. ...+...|.+ +.+..|..
T Consensus 156 -----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 156 -----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred -----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 455899999999999999864320 00000000 0111123333 44445666
Q ss_pred EEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCC---CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeE
Q 014125 187 KIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLY 259 (430)
Q Consensus 187 ~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~ 259 (430)
.|+ +| .|+.|+|||++......+..........-+ ...+.++.....+. +|++.+.|+.|++|++.+.. ++.
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~ 309 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVA 309 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchh
Confidence 777 55 599999999997544333221111111122 34577777777445 55555559999999998653 344
Q ss_pred EeeccccC--eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcE
Q 014125 260 VLHGQEGG--VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLV 336 (430)
Q Consensus 260 ~~~~~~~~--i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 336 (430)
.+.++... -..-..+|++.+|++++ .|...++|.+.........+ .+|.-.|++++|.|.. .-++++++|.++
T Consensus 310 ~~sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~~~~l---~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 310 EFSGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAPPALL---LGHTREVTTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred hccCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCChhhh---hCcceEEEEEeeccccCCCceeeccCcce
Confidence 44443321 12234589999999999 99999999998876554333 6899999999999864 347777999999
Q ss_pred EEEEcCCCC--------------eecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 337 HIYDLQTGK--------------WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 337 ~vwd~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+||++..+- ....+++|...+..+.++-.+.+.... .+..++|
T Consensus 386 kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ 442 (720)
T KOG0321|consen 386 KIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRIS 442 (720)
T ss_pred EEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccc
Confidence 999997542 233456666666666665443333322 4445555
No 152
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.3e-23 Score=182.56 Aligned_cols=255 Identities=18% Similarity=0.247 Sum_probs=201.7
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEE-EEECC-C-CcEEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNP-T-GTKIFA 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~-~~~l~~ 190 (430)
...+|...|..++.. ++..++++++||++++|+-..++........... +-|.. +++.+ + ++.+.+
T Consensus 9 ~l~gH~~DVr~v~~~--------~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT--------DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAESDKGRLVVG 77 (745)
T ss_pred EeccCccchheeEec--------CCeEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceeccccCcceEee
Confidence 344566778887762 3457999999999999998776655433222211 13333 56654 2 334556
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+.|.++.+|..... .....+.+|...|.+++... .. .+++|+.|.++++|-. +++...+++|...|.+
T Consensus 78 ~~D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred cccceEEEEecCCC--------CchhhhhccccceeeeecCC-cC-ceEecccccceEEecc--hhhhcccCCcchheee
Confidence 79999999998773 33344589999999999776 33 4999999999999976 4666679999999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+++-|.+ .+++|+ .|.+|++|.-.+. +..+.+|...|..+++-+++ .+++++.||.|+.|++ +|+.+..+
T Consensus 146 v~~l~e~-~~vTgs-aDKtIklWk~~~~------l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 146 VASLPEN-TYVTGS-ADKTIKLWKGGTL------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred eeecCCC-cEEecc-CcceeeeccCCch------hhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee
Confidence 9999988 677888 9999999986432 23337899999999998864 5789999999999999 79999999
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC----------------------ccccccCCCcEEEEeec
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE----------------------DLHLSGDENCVSVWSFL 401 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~----------------------~l~~~~~d~~i~~w~~~ 401 (430)
.+|..-|.+++..+++..+++++.|+++++|+.. .+++++.||.||||...
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 9999999999988899999999999999999543 28899999999999887
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=1.4e-22 Score=159.56 Aligned_cols=277 Identities=16% Similarity=0.259 Sum_probs=197.1
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC-------CcEEEE
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD-------HPIHLW 153 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~vw 153 (430)
|..|.+.+++.+.. ......+.++.+.|+.++-+|. +..+|+++..+ -.+.||
T Consensus 39 dNqVhll~~d~e~s--------------~l~skvf~h~agEvw~las~P~------d~~ilaT~yn~~s~s~vl~~aaiw 98 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGS--------------ELLSKVFFHHAGEVWDLASSPF------DQRILATVYNDTSDSGVLTGAAIW 98 (370)
T ss_pred cceeEEEEecCccc--------------hhhhhhhhcCCcceehhhcCCC------CCceEEEEEeccCCCcceeeEEEE
Confidence 66777777765421 2233456677789999998764 45577776542 237899
Q ss_pred eccCCceeee---eec--ccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 154 DATTGLLRCT---YRA--YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 154 d~~~~~~~~~---~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
.+........ +.. .-...+.+.|.|+.|.|++..+++-.|..|.+|++........ .........+....++-
T Consensus 99 ~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~va--ev~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 99 QIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVA--EVLSSESAEMRHSFTSG 176 (370)
T ss_pred ecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchhe--eecccccccccceeccc
Confidence 9876432211 111 1111234588999999999999988899999999987544211 11111122356678889
Q ss_pred EEcCCC-CceEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 229 AFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 229 ~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
+|+|.. ++.++ ...|+++..||+++.+....+ .+|...|..+.|+|+.++++++++.||.|++||.+..+.++..+
T Consensus 177 ~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el- 254 (370)
T KOG1007|consen 177 AWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL- 254 (370)
T ss_pred ccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-
Confidence 999943 44444 456899999999988766555 46888899999999988666555599999999999887665444
Q ss_pred cccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCC-----------------------------CeecccccccCC
Q 014125 307 RSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTG-----------------------------KWISGFQAAADT 356 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-----------------------------~~~~~~~~~~~~ 356 (430)
.+|...++++.|+|. .++|++|+.|..|.+|...+- ..+.++..|.+.
T Consensus 255 --~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS 332 (370)
T KOG1007|consen 255 --PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS 332 (370)
T ss_pred --CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc
Confidence 789999999999996 478899999999999976421 123456779999
Q ss_pred eeEEEEcCCCc-EEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLP-MAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~-~l~s~~~d~~~~vw~~ 383 (430)
|.+++|+.-.+ .+|+-+.||++.|-..
T Consensus 333 VY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eEEEeeccCCCeeEEEeccCceEEeecC
Confidence 99999998777 5566687888877543
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-24 Score=200.55 Aligned_cols=291 Identities=19% Similarity=0.292 Sum_probs=214.1
Q ss_pred EEEECcCCc-eEEEecC----------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 65 GIKWSPDGS-SFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 65 ~~~~sp~~~-~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++|+|++. +||+|.. +.++.||.+.-..... .....-.+.....-+.++|.+....
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~------------dlk~~~s~~s~~rF~kL~W~~~g~~ 78 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS------------DLKPVGSLQSSNRFNKLAWGSYGSH 78 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc------------cccccccccccccceeeeecccCCC
Confidence 478999886 6665532 4455666554221111 0112222334467888999653221
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCC---c---eeeeeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTG---L---LRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPG 205 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~---~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~v~d~~~~~ 205 (430)
+ ..+++.|..||.|.+||...- . .+..... |.+.|..+.|++... ++++| .+|.|.|||+....
T Consensus 79 --~-~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-----h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 79 --S-HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-----HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred --c-cceeeccccCCceEEecchhhccCcchHHHhhhcc-----cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 1 136899999999999998652 2 2223333 445999999999887 67755 89999999998754
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc--CeEEEEEccCCC-EEEE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--GVTHVQFSRDGN-YLYT 282 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~ 282 (430)
.++..- .......|.+++|+..-..+|++++.+|++.|||++..+.+..+..+.+ .+..++|+|+.. .|++
T Consensus 151 tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 151 TPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred CCCCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 433221 1234567999999987788999999999999999999888777765544 477999999865 4555
Q ss_pred EecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeE
Q 014125 283 GGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 283 ~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
++.+| -.|.+||+|........+ ..|...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+....+.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~---~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKIL---EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhh---cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 55233 369999999876655444 6899999999999976 88999999999999999999999999988889999
Q ss_pred EEEcCCCc-EEEEeeCCceeeecCCC
Q 014125 360 FSFHPFLP-MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 360 ~~~~~~~~-~l~s~~~d~~~~vw~~~ 384 (430)
+.|+|... .++.++-||.|.|+...
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeee
Confidence 99999888 77778888888888443
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.6e-23 Score=174.59 Aligned_cols=263 Identities=15% Similarity=0.209 Sum_probs=198.7
Q ss_pred eeEEEECcCCceEEE--ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 63 LKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 63 v~~~~~sp~~~~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+.++.|+.... |++ .+.|..|++|.-... . ...+.+....+..-.|++. .....+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~--~-------------~~Vp~~~k~~gd~~~Cv~~-------~s~S~y 93 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK--T-------------PEVPRVRKLTGDNAFCVAC-------ASQSLY 93 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCC--C-------------CccceeeccccchHHHHhh-------hhccee
Confidence 89999987653 444 455788999965432 1 1122222223333344433 223478
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++|+..+.|+|||+....+.+.++.|.. .|+++.++-...+|+++ ..|.|.|..+.++..... + ..
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s-----tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~----f---~~ 161 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLIHRFLKDHQS-----TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT----F---TI 161 (673)
T ss_pred eeccCcCceeeehhhHHHHHhhhccCCcc-----eeEEEEecCCcceeEEeccCCcEEEEecccCccccc----e---ec
Confidence 99999999999999997777777776665 99999999999999955 778999999877433211 1 12
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~ 297 (430)
+....++-+.|+|....+|.+++.+|.|.+||+....+...+ ..|..+...|+|+|... .|++.| .|..|.+||.+.
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s 240 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRS 240 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEEeeccc
Confidence 223457799999988888999999999999999887766554 57999999999999766 455666 999999999986
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeecccccccCCeeEEEEcCCC
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
.... .. .....+...++|+++|.+|+.|+..|.|..||++. ..++.++..|...|++++|-|.-
T Consensus 241 ~~s~-~~----l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QAST-DR----LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccc-ce----eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 5322 12 23566788999999999999999999999999985 56788999999999999998864
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=8.2e-23 Score=163.74 Aligned_cols=301 Identities=18% Similarity=0.225 Sum_probs=210.8
Q ss_pred ceeecccCCCceeEEEECc-----CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 52 QFRTSSIPNNFLKGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp-----~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
..+....|+.+|..++|++ +-+.+|++|.+ .+.+|......-...++. ...-.+.+..+.++
T Consensus 30 t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~------------y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 30 TNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQS------------YADEDHDESFYTCS 96 (385)
T ss_pred eeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeee------------ccCCCCCcceEEEE
Confidence 3457788999999999985 23567777765 788888764321111100 01113556778888
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRP 204 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~ 204 (430)
|.-.... ...++|.|+.-|.|+|.|+.+++....+..|.. .|..+.++|+...++ ++.|..|++|++++.
T Consensus 97 w~yd~~~---~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 97 WSYDSNT---GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred EEecCCC---CCeeEEeecceeEEEEEecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 8543221 245889999999999999999999999998887 999999999985444 559999999999874
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-------------------------
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY------------------------- 259 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~------------------------- 259 (430)
.. ..+-....+|...|.++.|++ .+.++++++.|.++++|++...+...
T Consensus 169 ~C-----v~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 169 VC-----VAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred eE-----EEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 21 223344579999999999999 55599999999999999998332100
Q ss_pred ---EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce----------EEEEeecccCCccceEE--EEEcCCC
Q 014125 260 ---VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ----------VVYKLYRSSEHTNQRIL--FDIEPSG 324 (430)
Q Consensus 260 ---~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~--~~~~~~~ 324 (430)
+-.-|...|-|+.| -|.++++-+ .++.|..|....... ....+.+..-....++- .+|.|-+
T Consensus 243 ~fst~diHrnyVDCvrw--~gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRW--FGDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccchHHHHHH--Hhhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 11235666777777 467888888 789999998721111 11122222233344444 4556668
Q ss_pred CEEEEEccCCcEEEEEcCCCCeec--cccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWIS--GFQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.||.|...|.|++||++..++.. ++.. ....|...+|+.++.+|+..+.|+.|.-||
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999999999999999999877632 2221 234699999999999999988665555554
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.5e-23 Score=168.73 Aligned_cols=210 Identities=20% Similarity=0.319 Sum_probs=156.1
Q ss_pred ceEEEEECCCC-cEEEEE--cCCeEEEEEcCCCCCccc--------ccccccCCCCCCCcceEEEEEcCCCCceEEEecC
Q 014125 175 AAFSVAFNPTG-TKIFAG--YNKSVRVFDVHRPGRDFE--------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243 (430)
Q Consensus 175 ~v~~~~~~~~~-~~l~~~--~d~~i~v~d~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 243 (430)
.+..+.-++-+ ..++++ ..|.|.||++...-..+. ........+.+|...-..++|+|.....|++|..
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 55555555554 333343 679999999875322111 1111222346788888999999977778999999
Q ss_pred CCeEEEEEcCCcee---eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE
Q 014125 244 SQTSAIYREDNMEL---LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 244 dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
-+.|++|...++.- ...+.+|...|-.++|||..+.++++|+.||+|+|||+|.+.+...... ..|.+.|+.++|
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISW 310 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISW 310 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCceeeEEc
Confidence 99999999888643 2345679999999999998765555554999999999998743322222 678899999999
Q ss_pred cCCCCEEEEEccCCcEEEEEcCC---CCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEE
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQT---GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVS 396 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~ 396 (430)
+....+||+|+.||+++|||++. ++++..|+.|..+|++|.|+|... .|+++ |.|..|.
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas-----------------g~D~Qit 373 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS-----------------GEDNQIT 373 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec-----------------cCCCcEE
Confidence 99888999999999999999985 677889999999999999999754 33333 4577777
Q ss_pred EEeeccc
Q 014125 397 VWSFLYA 403 (430)
Q Consensus 397 ~w~~~~~ 403 (430)
+||++..
T Consensus 374 iWDlsvE 380 (440)
T KOG0302|consen 374 IWDLSVE 380 (440)
T ss_pred EEEeecc
Confidence 7777643
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=169.14 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=177.5
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCC--cEEE
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTG--TKIF 189 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~ 189 (430)
..+.+.|++++|+| ....+++++|..-|+|-+||+.+.+ -+..+..|.. +|.++.|+|.+ +++.
T Consensus 183 kv~~~Rit~l~fHP-----t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 183 KVTDRRITSLAFHP-----TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----PVSGLKFSPANTSQIYS 252 (498)
T ss_pred EecccceEEEEecc-----cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-----cccceEecCCChhheee
Confidence 34567899999988 4455789999999999999995322 2333344433 89999999976 4555
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccccCe
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGV 268 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i 268 (430)
++.||+|++-|++..-. +.+.. .......+..+.|+.. ...++.+..=|...+||+++.+. ...+.-|...|
T Consensus 253 sSyDGtiR~~D~~~~i~--e~v~s----~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNIS--EEVLS----LDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eccCceeeeeeecchhh--HHHhh----cCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 78999999999976311 11111 1234456888899884 44556666666999999998765 66677788899
Q ss_pred EEEEEccCCCE-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC----C
Q 014125 269 THVQFSRDGNY-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ----T 343 (430)
Q Consensus 269 ~~~~~~~~~~~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~ 343 (430)
.+++++|-..+ |++++ .|++.+|||++........+.....|...|.+..|||++-.|++.+.|..|+|||.. .
T Consensus 326 ~sv~~NP~~p~~laT~s-~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATAS-LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred ceeecCCCCchheeecc-cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 99999997765 55555 999999999987543321233336799999999999998889999999999999983 3
Q ss_pred CCeecccccccC------CeeEEEEcCCCcEEEEeeCCceeee
Q 014125 344 GKWISGFQAAAD------TVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 344 ~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
-.+...+. |.. ......|.|+..+++.+-.-..|-|
T Consensus 405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeE
Confidence 34444443 322 2445689999999999875443333
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-21 Score=169.29 Aligned_cols=256 Identities=16% Similarity=0.269 Sum_probs=198.3
Q ss_pred ecccC-CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h-~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
++.+| +..|-+++|++ +..|++.+.+|.|.-||+.+.+...... ..++.|++++-
T Consensus 63 vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d-----------------~~gg~IWsiai------ 118 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNID-----------------SNGGAIWSIAI------ 118 (691)
T ss_pred EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEec-----------------CCCcceeEEEe------
Confidence 44455 46899999995 5578899999999999998775433222 23478999998
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|.+..++.|+.||.+..++...++......... ....+.+++|+|++..+++| .||.|++||...+........
T Consensus 119 -~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r---q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 119 -NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR---QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred -CCccceEEeecCCceEEEEecCCceEEEEeeccc---ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 5678899999999988888887776554433322 12489999999999988865 899999999987544321111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.+..........|.++.|-.+ ..+++|...|+|.+||...+..+..+..|...|.+++.++++..++++| .|+.|..
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~ 271 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQ 271 (691)
T ss_pred cccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEE
Confidence 122222334556888888753 3899999999999999999999999999999999999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
|...+.............|...+.+++..++ .+++|+.|..+.+-..+.
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9888775533344444678889999998876 899999999998876654
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=159.12 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=185.4
Q ss_pred eEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
..|+.|++.|.+++.| .||.|.|||+.+. .+...+.+|..+|++++|++ +++.|++++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccC
Confidence 5689999999999966 9999999999873 34445678999999999999 777999999999999999999
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
+.+++.+. ...+|+...|+|.....++++-.+..-.+-++..+..................+..|++.|+++++|...|
T Consensus 97 gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 97 GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 99998887 67899999999965544444335666666677655443333222111222223346889999999999999
Q ss_pred cEEEEEcCCCCeeccccccc-CCeeEEEEcCCCcEEEEeeCCceeeecCCCc----------------------------
Q 014125 335 LVHIYDLQTGKWISGFQAAA-DTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------------- 385 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------------- 385 (430)
.+.|+|..+.+++..++-.. ..|.++.++..|..|+.-+.|+.|++++...
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99999999999999888666 7899999999999999999999999995432
Q ss_pred ---------cccccCCCcEEEEeecccccccccCCCCcceeeee
Q 014125 386 ---------LHLSGDENCVSVWSFLYASMMENADGINGCEFNCQ 420 (430)
Q Consensus 386 ---------l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 420 (430)
.+++..-..++||.-..|.++..+.|-.|.....+
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV 299 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV 299 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence 23334466899999999999999998876554433
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.2e-21 Score=179.60 Aligned_cols=296 Identities=16% Similarity=0.285 Sum_probs=205.7
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+....-..+.|+|-...++++...-.|+|||.+.++....+.... .....|.++.+.. ..|
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--------------~~~t~Vs~l~liN-----e~D 1122 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--------------FPDTRVSDLELIN-----EQD 1122 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------CCCCccceeeeec-----ccc
Confidence 334456778899988899999877799999999887654443322 1235677777754 446
Q ss_pred CceEEEEeCCCcEEEEeccCC-----ceeeeeecccccc--cccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 138 SCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVD--EITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
..++++|+.||.|+||+--.. +.+..+....... ..+.-.-+.|.....+|+ +|.-..|+|||......
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--- 1199 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--- 1199 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee---
Confidence 678999999999999974322 2333332222111 111113456776665666 55678999999976321
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccC--eEEEEEccCCCE-EEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGG--VTHVQFSRDGNY-LYTG 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~~-l~~~ 283 (430)
......+....++++.-+...++++++|..||.|++||.+... .+...+.|... |..+.+.+.|-. |+++
T Consensus 1200 ----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1200 ----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred ----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence 1111233455688887777678999999999999999988643 45666778776 999999886654 8888
Q ss_pred ecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-------cC
Q 014125 284 GRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-------AD 355 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~ 355 (430)
+ .||.|++||++..... ...+.......+.++++..++....+|+|+. +.|+||++. |+.+..++.+ .+
T Consensus 1276 s-~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1276 S-QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred c-cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCC
Confidence 8 9999999999984222 1111111222346899999999999999998 899999987 4444444322 34
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+.+++|||...+||+|+.|..|.||.
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEee
Confidence 689999999999999998777776664
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=2.3e-21 Score=152.97 Aligned_cols=259 Identities=13% Similarity=0.203 Sum_probs=187.3
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeC----CCcEEEEecc--CCceeeeeecccccccccceEEEEECCCCc----EEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTR----DHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPTGT----KIF 189 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~ 189 (430)
-+++++.|+.. ...+.+|+.|+. .+.|.+..+. +++.+. ...+++.-+++.+.|.|+.. -++
T Consensus 45 ~~lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~----~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE----DANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CceeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCCceec----cCCCCCCCCccceEecCCccccCcchh
Confidence 57888999653 223457888764 3557776554 233222 22245666899999999873 344
Q ss_pred EEcCCeEEEEEcCCCCCccccccccc-CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccc
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQE 265 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~ 265 (430)
++.+..+|+|.+............+. .....+..+++++.|+.-+.+++.+++-|-+..|||+.++. ....+.+|.
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 56677999999986443332222221 12345567999999999889999999999999999999863 356677899
Q ss_pred cCeEEEEEccCCCE-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCC-cEEEEEcC
Q 014125 266 GGVTHVQFSRDGNY-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDG-LVHIYDLQ 342 (430)
Q Consensus 266 ~~i~~~~~~~~~~~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg-~i~vwd~~ 342 (430)
..|..++|...+.. +++.| .||.||+||+|...... .++.......+...++|++.. +++|+-..|+ .|.|.|++
T Consensus 197 KEV~DIaf~~~s~~~FASvg-aDGSvRmFDLR~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVG-ADGSVRMFDLRSLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cceeEEEeccCccceEEEec-CCCcEEEEEecccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999987664 55555 99999999999875443 344444446788899998854 6788776664 59999998
Q ss_pred C-CCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCcccc
Q 014125 343 T-GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHL 388 (430)
Q Consensus 343 ~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~ 388 (430)
. ..++..+++|.+.|++++|.|... .|++++.|....+||..+..-
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 5 567899999999999999999654 777777666666666655544
No 163
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=169.50 Aligned_cols=305 Identities=17% Similarity=0.224 Sum_probs=222.3
Q ss_pred eecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
.+.....+.+|.+.|..|.|+..|..|++||.|..|.+||+...+.+ .....+|...|..-.|.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------l~f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------LSFESGHCNNVFQAKFI 194 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------cccccccccchhhhhcc
Confidence 34566789999999999999999999999999999999999876432 23344566778888888
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCC
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPG 205 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~ 205 (430)
|. .+...+++++.||.+++=.+....... +.... .|.++|..++..|+..+ +.+|.|+.+.-+|++...
T Consensus 195 P~-----s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~---~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 195 PF-----SGDRTIVTSSRDGQVRVSEILETGYVENTKRLA---PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred CC-----CCCcCceeccccCceeeeeeccccceecceecc---cccCccceeeecCCCCCcccccccccceeeeeeccCC
Confidence 84 456679999999999987765433222 22211 23347888888888744 337799999999998754
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee------eEEeec------cccCeEEEEE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------LYVLHG------QEGGVTHVQF 273 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~------~~~~~~------~~~~i~~~~~ 273 (430)
...... .........-....++.+|...+.+++|+.|..+++||.+.-.. +..+-. ..-.|++++|
T Consensus 267 pa~~~~--cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 267 PAEKFV--CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred ccceee--eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 433222 11111111236789999998888999999999999999875321 222221 2346999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCce-----------EEEEeecccCCc--cceEEEEE-cCCCCEEEEEccCCcEEEE
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQ-----------VVYKLYRSSEHT--NQRILFDI-EPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~dg~i~vw 339 (430)
+.++.-|+++- .|-.|++|.-..+.- .....+ .+|. ..|..+-| -|...|+++|+.-|.|.||
T Consensus 345 sh~~sElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW 421 (559)
T KOG1334|consen 345 SHDGSELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIW 421 (559)
T ss_pred cCCccceeeee-cccceEEeccccccCCCCCCCcchhhccchhh--cccccccccceeeeccCccceEEecCccceEEEE
Confidence 98887777777 799999995432211 111112 3443 34555554 5778999999999999999
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+-.+++.+..+.+....|+||.-||.-++||+++-|..|+||.
T Consensus 422 ~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 422 DKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 9999999999998888999999999999999998877777773
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=2.8e-21 Score=159.29 Aligned_cols=288 Identities=14% Similarity=0.188 Sum_probs=198.7
Q ss_pred CCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..+|.++.|.++.. .||||+.|..|+||.+......... ..-.-......|...|+++.| +|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~--------~~V~y~s~Ls~H~~aVN~vRf-------~p~g 77 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD--------MKVEYLSSLSRHTRAVNVVRF-------SPDG 77 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc--------eeEEEeecccCCcceeEEEEE-------cCCc
Confidence 45799999998765 9999999999999998755322110 001112234568889999999 7799
Q ss_pred ceEEEEeCCCcEEEEeccCC----------------ceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEc
Q 014125 139 CVFASTTRDHPIHLWDATTG----------------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV 201 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~ 201 (430)
.+|++|+.+|.|.+|....- .....+.. |...|+.++|+|++.+++++ .|+.+++||+
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-----h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-----HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-----cccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99999999999999987611 11122222 33489999999999999955 8999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-------------------
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------------- 262 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------- 262 (430)
..+ .+......|...+..++|.| ...++++-+.|...+.+++...+.+....
T Consensus 153 ~~G--------~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL 223 (434)
T KOG1009|consen 153 HAG--------QLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL 223 (434)
T ss_pred ccc--------eeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence 873 44455678889999999999 77788888888877776655433221111
Q ss_pred ccc----cCeEEEEEccCCCEEEEEec---CC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcC--------
Q 014125 263 GQE----GGVTHVQFSRDGNYLYTGGR---KD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-------- 322 (430)
Q Consensus 263 ~~~----~~i~~~~~~~~~~~l~~~~~---~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------- 322 (430)
-|. .-...++|+|+|..+++.++ .+ +..++|+-....++...+ .....+...+.|+|
T Consensus 224 fhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l---p~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 224 FHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL---PSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred eecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec---CCCCcceEEEEeeeeEEEeccc
Confidence 011 12456889999998887541 11 223455443333332222 33344455555554
Q ss_pred ----------CCCEEEEEccCCcEEEEEcCCCCeecccc-cccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 323 ----------SGRHLGTGGQDGLVHIYDLQTGKWISGFQ-AAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 323 ----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
.+..+|.++. +.|+|||..+-+++.... -|-..|+.++|+++|..|+.+|.||-..+
T Consensus 301 ~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 2334556655 479999999988877653 58889999999999999999998775544
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=3.7e-21 Score=168.34 Aligned_cols=270 Identities=11% Similarity=0.211 Sum_probs=207.1
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.|..++|-|||..|+.+..+ .+.+||..++.+...++.+ ...|++++| +.+|+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgH-----------------KDtVycVAy-------s~dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGH-----------------KDTVYCVAY-------AKDGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccc-----------------cceEEEEEE-------ccCCcee
Confidence 69999999999988877665 7999999988776665554 489999999 8899999
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
++|+.|..|.+|...-... ++. .|...|.|+.|+|-...++++.=...-+|...... ..+ ...
T Consensus 69 ASG~aDK~VI~W~~klEG~---LkY----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~--------V~K--~ks 131 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGI---LKY----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS--------VSK--HKS 131 (1081)
T ss_pred ccCCCceeEEEecccccce---eee----ccCCeeeEeecCchHHHhhhcchhhccccChhhhh--------HHh--hhh
Confidence 9999999999998643322 221 23348999999999999997665667788775421 111 122
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee---ccccCeEEEEEccCC-----CEEEEEecCCCeEEEE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDG-----NYLYTGGRKDPYILCW 293 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~~~~~d~~i~i~ 293 (430)
...+.+++|.. ++.+++.|-.+|+|.+-+-. ++....++ +...+|.+++|+|.. ..+++.. ...++.+|
T Consensus 132 s~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy 208 (1081)
T KOG1538|consen 132 SSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFY 208 (1081)
T ss_pred heeEEEeeecC-CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEE
Confidence 35688999998 67799999999999998654 44333333 356799999999963 3577777 78888888
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.+.... . .....-.-...|+++-|+|.+++.|+.|+.+.+|- +.|-.+.++......|+.++.+|++++++.|+
T Consensus 209 ~LsG~~-I----gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 209 QLSGKQ-I----GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred Eeccee-e----cccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 776531 1 11122334456788999999999999999999996 55777777777778999999999999999999
Q ss_pred CCceeeecC
Q 014125 374 GHRRFPVDD 382 (430)
Q Consensus 374 ~d~~~~vw~ 382 (430)
.||++.-++
T Consensus 283 qDGTiACyN 291 (1081)
T KOG1538|consen 283 QDGTIACYN 291 (1081)
T ss_pred ccCeeehhh
Confidence 999998774
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=156.90 Aligned_cols=278 Identities=12% Similarity=0.123 Sum_probs=189.8
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
..+|++-..|+|++||..+++....++.+. ..+..++|.. ......+.+|+.||+|++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-----------------~~~N~vrf~~-----~ds~h~v~s~ssDG~Vr~ 98 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-----------------ATTNGVRFIS-----CDSPHGVISCSSDGTVRL 98 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-----------------CcccceEEec-----CCCCCeeEEeccCCeEEE
Confidence 578888889999999999987766655544 4555666632 114567999999999999
Q ss_pred EeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-----cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
||++.......+...... ..+..+++.+-.+..+++| .+-.|.+||++..... +......|...|++
T Consensus 99 wD~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 99 WDIRSQAESARISWTQQS--GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQ 170 (376)
T ss_pred EEeecchhhhheeccCCC--CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCccee
Confidence 999987665555443321 1255677766677788865 4678999999875432 33445788999999
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccccCeEEEEEccCC-CEEEEEecCCCeEEEEeCCCCceEEE
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~ 303 (430)
+.|+|.+.++|++|+.||-|.+||+.... .+...-.|...|.++.|..++ +.|.+-+ ......+|+++.+.....
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGSEETW 249 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCChhhc
Confidence 99999999999999999999999987542 222222377789999998776 4577777 899999999988753321
Q ss_pred Eeecc---------cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcC---C---CCeeccccc-ccCCeeEEEEcCCC
Q 014125 304 KLYRS---------SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQ---T---GKWISGFQA-AADTVNGFSFHPFL 366 (430)
Q Consensus 304 ~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~---~---~~~~~~~~~-~~~~v~~~~~~~~~ 366 (430)
+... ...-..+...-...++...+.++. -|...++-+. + .+.+..+.+ |..-|+++.|...+
T Consensus 250 -~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~ 328 (376)
T KOG1188|consen 250 -LENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN 328 (376)
T ss_pred -ccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc
Confidence 1110 001111211111223344444444 5666665544 2 344556665 66689999999888
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
.++.||+.||.+.+|.
T Consensus 329 ~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 329 DVLYTGGEDGLLQAWK 344 (376)
T ss_pred ceeeccCCCceEEEEe
Confidence 8888888766666664
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.7e-21 Score=156.31 Aligned_cols=256 Identities=15% Similarity=0.221 Sum_probs=191.4
Q ss_pred cCCCceeEEEECcC----CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 58 IPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 58 ~h~~~v~~~~~sp~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.|......++|+-| ..+||.||.-|.|+|.|+.+++... ...+|+..|..+.++|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-----------------~~~ghG~sINeik~~p~--- 146 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-----------------NYRGHGGSINEIKFHPD--- 146 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-----------------ceeccCccchhhhcCCC---
Confidence 47777888999764 3489999999999999998765432 34568899999999875
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc-----
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD----- 207 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~----- 207 (430)
..+++++++.|..|++|++++..++..+.+.. +|...|.++.|++++.+|+ +|.|.+|++|++..+.-.
T Consensus 147 ---~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e--gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 147 ---RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE--GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred ---CCcEEEEecCCceEEEEeccCCeEEEEecccc--cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 44699999999999999999999999987755 4666999999999999999 669999999999842110
Q ss_pred ---------ccccccccC------CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-c-------------eee
Q 014125 208 ---------FEKYSTLKG------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-M-------------ELL 258 (430)
Q Consensus 208 ---------~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~-------------~~~ 258 (430)
...+..... ...-|...|-|+.|- ++++++-+.++.|..|.... . ..+
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~ 298 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL 298 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeee
Confidence 000101000 224466777777774 35888888899999997621 1 122
Q ss_pred EEeeccccCeEEEE--EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 259 YVLHGQEGGVTHVQ--FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 259 ~~~~~~~~~i~~~~--~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
..+.-....|.-+. |+|.++.|+.+. ..|.|.+||++..................|...+|+.||..|+...+|++|
T Consensus 299 ~~~~~~~c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 299 GEFDYPMCDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eEeccCccceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence 33333344555554 567788999998 999999999998765433333334456779999999999999999999999
Q ss_pred EEEEcC
Q 014125 337 HIYDLQ 342 (430)
Q Consensus 337 ~vwd~~ 342 (430)
.-||..
T Consensus 378 wrwdrv 383 (385)
T KOG1034|consen 378 WRWDRV 383 (385)
T ss_pred EEEEee
Confidence 999854
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=2.1e-20 Score=168.28 Aligned_cols=274 Identities=14% Similarity=0.121 Sum_probs=196.8
Q ss_pred CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCce-
Q 014125 82 KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL- 160 (430)
Q Consensus 82 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 160 (430)
+.+.||++... ......+.....|.+++|+|. +..+++.|..+|+|.+||+..+..
T Consensus 222 ~~~~vW~~~~p-----------------~~Pe~~~~~~s~v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~ 278 (555)
T KOG1587|consen 222 GVLLVWSLKNP-----------------NTPELVLESPSEVTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDT 278 (555)
T ss_pred ceEEEEecCCC-----------------CCceEEEecCCceeEEEeccC------CcceEEeeccCceEEEEEccCCCCC
Confidence 46889988753 234455566689999999886 556899999999999999988765
Q ss_pred -eeeeecccccccccceEEEEECCCCc---EEEEEcCCeEEEEEcCCCCCcccccccc----cCCCCCCCcceEEEEEcC
Q 014125 161 -RCTYRAYDAVDEITAAFSVAFNPTGT---KIFAGYNKSVRVFDVHRPGRDFEKYSTL----KGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 161 -~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~ 232 (430)
...+.... ..|..++..+.|..+.. ++.++.||.|..|+++.-..+......- ..........+++++|.+
T Consensus 279 ~~s~ls~~~-~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 279 PPSGLSALE-VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred CCccccccc-ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 33333322 24556889999976543 4446799999999887533322111000 011113345689999999
Q ss_pred CCCceEEEecCCCeEEEEEcCCce--------eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE
Q 014125 233 THTGMLAIGSYSQTSAIYREDNME--------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~ 304 (430)
...+.+++|+++|.|.--+....+ ....+..|.++|+++.++|-+..++.++ .|-+++||.......+.
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~Pl-- 434 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIASPL-- 434 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee-ccceeEeccccCCCCcc--
Confidence 899999999999999874332221 2334556889999999999988887777 69999999987333332
Q ss_pred eecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCC--CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 305 LYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQT--GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 305 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.....+...+++++|||.. ..++++..||.|.+||+.. ..++...+.+....+.+.|++.|+.|+.|...|.+.++
T Consensus 435 -~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 435 -LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred -hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 2224566679999999976 4677888899999999974 45566666566677888999999999999977666666
Q ss_pred CC
Q 014125 382 DF 383 (430)
Q Consensus 382 ~~ 383 (430)
+.
T Consensus 514 ~l 515 (555)
T KOG1587|consen 514 KL 515 (555)
T ss_pred Ec
Confidence 55
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=8e-22 Score=166.53 Aligned_cols=221 Identities=18% Similarity=0.234 Sum_probs=179.5
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
.|++......|+++||..+.|+|||+...... .....|...|+++.| +-...+||+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h-----------------r~lkdh~stvt~v~Y-------N~~DeyiAs 138 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIH-----------------RFLKDHQSTVTYVDY-------NNTDEYIAS 138 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHh-----------------hhccCCcceeEEEEe-------cCCcceeEE
Confidence 33433334479999999999999999843322 233345589999999 557889999
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
++..|.|.|..+.++.....+...... .|.-+.|+|..++++ ++.+|.|.+||+....+ .......|
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~sgq----svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-------~~~~~~~H 207 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDSGQ----SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-------IFHASEAH 207 (673)
T ss_pred eccCCcEEEEecccCccccceecCCCC----eEEEeecccccceeeEeeccCCeEEEEeccCCCc-------ccchhhhc
Confidence 999999999999999887777765431 567899999998887 56899999999976422 22334678
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
..+...++|+|.+..+|++.+.|..|.+||.+..+....+. ...+...++|.++|.+|++|. ..|.|..||++..+.+
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP 285 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC
Confidence 89999999999889999999999999999999777666665 567899999999999999999 9999999999998777
Q ss_pred EEEeecccCCccceEEEEEcCCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~~ 324 (430)
+... ..|...|++++|-|..
T Consensus 286 v~v~---sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 286 VAVR---SAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEe---eecccceeEEEeeecc
Confidence 6555 6788889999998764
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=6.7e-21 Score=150.25 Aligned_cols=266 Identities=17% Similarity=0.181 Sum_probs=192.5
Q ss_pred eecccCCCceeEEEECc-CCceEEEecCC-------CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeee
Q 014125 54 RTSSIPNNFLKGIKWSP-DGSSFLTSSED-------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp-~~~~l~s~~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 125 (430)
+++..|.+.|..++-+| +.+.|+|+..+ ..+.||.++...-...... ......+...+-+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t-------lE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST-------LECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-------hhHhhcCCHHHhCceeeE
Confidence 57788999999999999 56677776542 2478999875432111000 001111222233589999
Q ss_pred eeccccCccCCCCceEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECC--CCcEEEEEcCCeEEEEEcC
Q 014125 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~~i~v~d~~ 202 (430)
.| .|++..+++-. |..|.+|++..+.. +..+......++....++-+|+| ++..+++..|+++..||++
T Consensus 130 ew-------~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 130 EW-------EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred EE-------cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 99 45677787766 77899999988766 55555544444455677889998 6788888999999999998
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCC-EE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGN-YL 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l 280 (430)
+... .......|...+..+.|+|+...+|++++.||.|++||.+.. .++..+.+|...|.++.|+|... +|
T Consensus 202 T~~~-------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 202 TMKK-------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred chhh-------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 7432 223346788889999999988899999999999999999865 57889999999999999999755 55
Q ss_pred EEEecCCCeEEEEeCCCCce--------------------E-----EEEeecccCCccceEEEEEcCCCCE-EEEEccCC
Q 014125 281 YTGGRKDPYILCWDLRKAVQ--------------------V-----VYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDG 334 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~--------------------~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg 334 (430)
++++ .|..|.+|....-.. . -..+.....|...|++++||.-..+ +|+-+.||
T Consensus 275 Ls~~-SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 275 LSGG-SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EecC-CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 5566 999999996542110 0 0012233568899999999976554 67889999
Q ss_pred cEEEEEcC
Q 014125 335 LVHIYDLQ 342 (430)
Q Consensus 335 ~i~vwd~~ 342 (430)
++.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 99886654
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=1.7e-20 Score=168.89 Aligned_cols=265 Identities=19% Similarity=0.178 Sum_probs=190.3
Q ss_pred CCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
...|+|+.|+| +..+||.|..+|.|.+||+..+.... ..........|..++..+.|.. ++.+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------~s~ls~~~~sh~~~v~~vvW~~-----~~~~ 305 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------PSGLSALEVSHSEPVTAVVWLQ-----NEHN 305 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------CcccccccccCCcCeEEEEEec-----cCCC
Confidence 56799999999 67788999999999999998764421 1233345567888999999976 3444
Q ss_pred ceEEEEeCCCcEEEEeccCCceee-ee----ec--ccccccccceEEEEECCCC--cEEEEEcCCeEEEEEcCCCCCccc
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRC-TY----RA--YDAVDEITAAFSVAFNPTG--TKIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~-~~----~~--~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
.-|++++.||.|..|+++.-.... .. .. .........+++++|.+.. .+++++.+|.|..-+-........
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 679999999999999876432211 11 11 0111223478899998865 344455888887744332222221
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
...........|.++|+++.++|....++++++ |.+|++|... ...++..+..+...+++++|||....++++...||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 222333345678899999999998887777777 9999999988 66777777777788999999998877666665899
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.|.+||+......... .........+.+.|++.|+.|++|...|.+++|++..
T Consensus 465 ~l~iWDLl~~~~~Pv~--s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVL--SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceehhhhhccccCCcc--cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999865433211 1122356677888999999999999999999999963
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=4.4e-19 Score=156.43 Aligned_cols=279 Identities=14% Similarity=0.209 Sum_probs=175.0
Q ss_pred EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe-CCCcEEEE
Q 014125 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLW 153 (430)
Q Consensus 75 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vw 153 (430)
+++...++.|++|++.+.... .........+....+++ +|++++|++++ .++.|.+|
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l---------------~~~~~~~~~~~~~~l~~-------spd~~~lyv~~~~~~~i~~~ 62 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGAL---------------TLLQVVDVPGQVQPMVI-------SPDKRHLYVGVRPEFRVLSY 62 (330)
T ss_pred EEEcCCCCCEEEEEECCCCce---------------eeeeEEecCCCCccEEE-------CCCCCEEEEEECCCCcEEEE
Confidence 344467899999999642110 00011112233444555 78899887664 57889999
Q ss_pred eccC-CceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE
Q 014125 154 DATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (430)
Q Consensus 154 d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (430)
++.. ++.. ....... ......++++|++++++++ .++.|.+|+++..+......... .+......+++
T Consensus 63 ~~~~~g~l~-~~~~~~~---~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~ 133 (330)
T PRK11028 63 RIADDGALT-FAAESPL---PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-----EGLEGCHSANI 133 (330)
T ss_pred EECCCCceE-EeeeecC---CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-----cCCCcccEeEe
Confidence 9973 3321 1111111 1145689999999988854 58999999997533221111111 11233567889
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeE-------EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC--c-e
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLY-------VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA--V-Q 300 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~--~-~ 300 (430)
+|++..++++...++.|.+||+.+...+. ... .......++|+|+|++++++...++.|.+|++... . .
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 99666566677778999999997643221 111 12346789999999999998845999999999742 1 1
Q ss_pred EEEEeeccc---CCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeeccccccc---CCeeEEEEcCCCcEEEEee
Q 014125 301 VVYKLYRSS---EHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGFQAAA---DTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 301 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~ 373 (430)
....+.... .+......+.++|+|++++++.. ++.|.+|++........+.++. .....+.++|+|++|+++.
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 111111111 11223346889999999998864 6889999996543222222221 2457899999999999876
Q ss_pred CCceeeecCCCccccccCCCcEEEEeec
Q 014125 374 GHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 374 ~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
. .+++|.+|++.
T Consensus 293 ~----------------~~~~v~v~~~~ 304 (330)
T PRK11028 293 Q----------------KSHHISVYEID 304 (330)
T ss_pred c----------------cCCcEEEEEEc
Confidence 4 36778888775
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.8e-22 Score=182.67 Aligned_cols=253 Identities=18% Similarity=0.268 Sum_probs=189.6
Q ss_pred ceeEEEECcCCce----EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 62 FLKGIKWSPDGSS----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 62 ~v~~~~~sp~~~~----l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.-+.++|.+.|.. ||.|..||.|.+||...-.. ............|.+.|..+.|++. .
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------~~~~~~la~~~~h~G~V~gLDfN~~------q 128 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------NASEEVLATKSKHTGPVLGLDFNPF------Q 128 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhcc-----------CcchHHHhhhcccCCceeeeecccc------C
Confidence 3678999987665 88999999999999875210 1112223344567789999999663 4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCccccccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+++||+|+.||.|.|||+..-+.-.... .......|.+++|+..-.+|++ + .+|.+.|||++........
T Consensus 129 ~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l----- 200 (1049)
T KOG0307|consen 129 GNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL----- 200 (1049)
T ss_pred CceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-----
Confidence 5699999999999999998754433332 1223348999999988776663 3 7789999999875322111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCCc-eeeEEeeccccCeEEEEEccCC-CEEEEEecCCCeE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYI 290 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i 290 (430)
...+....+..++|+|++...+++++.|. .|.+||+|.- .+++.+.+|...|.++.|++.+ .+|++++ .|+.|
T Consensus 201 -s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~i 278 (1049)
T KOG0307|consen 201 -SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRI 278 (1049)
T ss_pred -ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCe
Confidence 11122245889999999888888888764 5999998864 5677888999999999999977 6777777 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 345 (430)
.+|+.++++. +..+ ....+++..+.|.|... .+++++-||.|.|+.+....
T Consensus 279 i~wN~~tgEv-l~~~---p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWNPNTGEV-LGEL---PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEecCCCceE-eeec---CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999743 3232 45678899999999765 78889999999999987654
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=161.03 Aligned_cols=218 Identities=17% Similarity=0.265 Sum_probs=155.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+...+.||.+.|+|+.|+.+|.+|++||.|-.+.|||.-..++ ...+..+|...|.++.|.|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------lhsI~TgHtaNIFsvKFvP-- 103 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------LHSISTGHTANIFSVKFVP-- 103 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------eeeeecccccceeEEeeec--
Confidence 4457899999999999999999999999999999999864432 3345567888999999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCc----------eeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEE
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVF 199 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~ 199 (430)
..+.+++++|..|..|+++|+...+ ....+.. |...|..++-.|++...+ ++.||+|+-+
T Consensus 104 ---~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-----ht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 104 ---YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-----HTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred ---cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhh-----hhhhhhheecCCCCCceEEEecCCcceeee
Confidence 4567899999999999999997522 1222222 334788888889884443 7799999999
Q ss_pred EcCCCCCccccc--ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--------e----------eeE
Q 014125 200 DVHRPGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------E----------LLY 259 (430)
Q Consensus 200 d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------~----------~~~ 259 (430)
|++.+-...... ...........-...++..+|....+|++|+.|-..++||.+.. . ++.
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~ 255 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVR 255 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhh
Confidence 998743221110 00000111222457899999999999999999999999994321 1 111
Q ss_pred Eee-ccc-----------cCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 260 VLH-GQE-----------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 260 ~~~-~~~-----------~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.+. +|- ..++-+.|+|+|.-|++.- ....|+++|+.
T Consensus 256 yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn 303 (758)
T KOG1310|consen 256 YFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVN 303 (758)
T ss_pred eecCccccCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeec
Confidence 111 121 1256788999998887776 56688888764
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=150.55 Aligned_cols=234 Identities=15% Similarity=0.190 Sum_probs=173.5
Q ss_pred ceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc----c-cccccCCCCCCCcceEEEEEc-------CCCCceEEEe
Q 014125 175 AAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE----K-YSTLKGNKEGQAGIMSAIAFS-------PTHTGMLAIG 241 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~----~-~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~ 241 (430)
-...+.|+|||..|++ +.|..+++|++........ . ..............|...+|- | ..+++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 3447899999998885 5899999999865322111 0 000000111223456666665 4 67799999
Q ss_pred cCCCeEEEEEcCCceeeEEeec--ccc---CeEEEEEccCCCEEEEEecCCCeEEEEeC-CCCceEE-EE-ee-cccCCc
Q 014125 242 SYSQTSAIYREDNMELLYVLHG--QEG---GVTHVQFSRDGNYLYTGGRKDPYILCWDL-RKAVQVV-YK-LY-RSSEHT 312 (430)
Q Consensus 242 ~~dg~v~~~d~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~~d~~i~i~d~-~~~~~~~-~~-~~-~~~~~~ 312 (430)
+.+.-|++||.-+++....+.+ |.. ...+++|+|||.+|++|- ...|++||+ |.+.... .. +. ...+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999987766653 322 456899999999999874 899999999 4443211 11 11 113446
Q ss_pred cceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC-CceeeecCCCc-----
Q 014125 313 NQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG-HRRFPVDDFED----- 385 (430)
Q Consensus 313 ~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~~~vw~~~~----- 385 (430)
+-+.+++|+|-. ..++.|+...++-||.-..+.++..+-+|.+.|+.+.|+++|+.|.+|+. |-.|..||...
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 778999999965 58999999999999999999999999999999999999999999999887 77899995443
Q ss_pred ------------------------cccccCCCcEEEEeecc-cccccccCC
Q 014125 386 ------------------------LHLSGDENCVSVWSFLY-ASMMENADG 411 (430)
Q Consensus 386 ------------------------l~~~~~d~~i~~w~~~~-~~~~~~~~~ 411 (430)
|++++.||.|++||... ++.......
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence 88888999999999986 543433333
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.3e-19 Score=160.37 Aligned_cols=248 Identities=16% Similarity=0.242 Sum_probs=179.2
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
-..-.||+|+++++.+..+ .|.||...++.+...+.. |..++..+...|. .+.-.+++
T Consensus 19 ~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~-----------------~~a~l~s~~~~~~----~~~~~~~~ 76 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLED-----------------HTAPLTSVIVLPS----SENANYLI 76 (792)
T ss_pred ecccccccCCcEEEEeeCC-EEEEEecchHhhhhhccc-----------------ccCccceeeecCC----CccceEEE
Confidence 3445789999999877765 899999998866543333 3467777777663 22236788
Q ss_pred EEeCCCcEEEEeccCCceeeeeeccccccc--------------------------------------------------
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDE-------------------------------------------------- 172 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------------------------------------------------- 172 (430)
+++.+|.|++||...+..+.++........
T Consensus 77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence 999999999999988877665543221000
Q ss_pred ---ccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEE
Q 014125 173 ---ITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI 249 (430)
Q Consensus 173 ---~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~ 249 (430)
...-.++.+++.+.+.....+..+.+|........ .........|...+++.+++| .++++|+|..||.|.+
T Consensus 157 ~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~----~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH----TSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILV 231 (792)
T ss_pred hhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee----eccchhhhhhcccceeEEecc-ccceEEEeccCCcEEE
Confidence 00023444555555555555667777777653311 111122245666789999999 8889999999999999
Q ss_pred EEcCC----ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC
Q 014125 250 YREDN----MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 250 ~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
|.--. ......+.-|...|++++|+++|.+|++|| ..|.+.+|.+.++++... ..-.++|..+.++||+.
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T~~kqfL-----PRLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-REGVLVLWQLETGKKQFL-----PRLGSPILHIVVSPDSD 305 (792)
T ss_pred EeccccccccccceEEEecccccceeEEecCCceEeecc-cceEEEEEeecCCCcccc-----cccCCeeEEEEEcCCCC
Confidence 96433 234556777889999999999999999999 999999999999864322 34568899999999999
Q ss_pred EEEEEccCCcEEEEEcCC
Q 014125 326 HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~ 343 (430)
+.+...+|+.|.+....+
T Consensus 306 ~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 306 LYSLVLEDNQIHLIKASD 323 (792)
T ss_pred eEEEEecCceEEEEeccc
Confidence 999999999999988743
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2.6e-18 Score=158.35 Aligned_cols=317 Identities=27% Similarity=0.455 Sum_probs=230.4
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCC-CcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
....|...+.++.+.+.+..++.++.|+.+.+|+..... ... .+...+...+..+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~----- 118 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK----------------SLEGLHDSSVSKLALS----- 118 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE----------------EEeccCCCceeeEEEE-----
Confidence 567899999999999999999999999999999998653 111 1111111244444441
Q ss_pred cCCCCc-eEEEEeC-CCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEEEE-c-CCeEEEEEcCCCCCcc
Q 014125 134 SDPTSC-VFASTTR-DHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDF 208 (430)
Q Consensus 134 ~~~~~~-~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~v~d~~~~~~~~ 208 (430)
++++. .++..+. |+.+.+|+... ......+..+.. .|..++|+|++..++.+ . ++.+++|++...
T Consensus 119 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 188 (466)
T COG2319 119 -SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---- 188 (466)
T ss_pred -CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCCCCCceEEEEcCCC----
Confidence 22344 4555444 99999999988 666666766655 88899999999877755 3 999999999762
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.......+|...+.+++|+|++...+++++.|+.|++||...+.... .+..|.... ...|+|++..+++++ .|
T Consensus 189 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d 262 (466)
T COG2319 189 ----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SD 262 (466)
T ss_pred ----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CC
Confidence 12222344788999999998554355555999999999988777777 677787775 448999998888787 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc--cccCCeeEEEEcCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ--AAADTVNGFSFHPF 365 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~ 365 (430)
+.+++|+++......... ..|...+.++.|+|++..+++++.|+.+.+|+..+........ .|...+..+.|.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339 (466)
T ss_pred CcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCC
Confidence 999999999776522222 4668899999999988888889999889999999887766665 78778999999433
Q ss_pred CcEEEEe-eCCceeeecCCCccc------------------------cccCCCcEEEEeecccccccccCC
Q 014125 366 LPMAASS-SGHRRFPVDDFEDLH------------------------LSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 366 ~~~l~s~-~~d~~~~vw~~~~l~------------------------~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
+..++.+ ..|+.+.+|+..... ..+.++.+.+|+............
T Consensus 340 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T COG2319 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410 (466)
T ss_pred CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccC
Confidence 2455555 577888888433211 134667777777766555444443
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.8e-21 Score=164.39 Aligned_cols=295 Identities=17% Similarity=0.167 Sum_probs=198.9
Q ss_pred ceEEEecCCCeEEEE--eCCCCCCccccccccc---ccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC
Q 014125 73 SSFLTSSEDKTLRIF--SLPENGISYDVNACSL---AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 147 (430)
+..++...+...++| ++........+..... ..............|...|+.+.| .+....|++++.|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~-------~~sep~lit~sed 315 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAF-------HPSEPVLITASED 315 (577)
T ss_pred CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhc-------CCCCCeEEEeccc
Confidence 355666667777888 5543332222220000 001111222244556667788887 4456689999999
Q ss_pred CcEEEEeccC--------CceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc--cccccC
Q 014125 148 HPIHLWDATT--------GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK--YSTLKG 216 (430)
Q Consensus 148 g~i~vwd~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~--~~~~~~ 216 (430)
|.+.+|++.. -+++.+|..|.. +|.|++..+++..++ +|.||+|+.|++.....+... ...+..
T Consensus 316 ~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 316 GTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred cchhhhhhcccCCccccceeeeEEEecccC-----ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 9999999932 134556666665 999999999999999 559999999988733222221 134556
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--cccCeEEEEEccCC-CEEEEEecCCCeEEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDG-NYLYTGGRKDPYILCW 293 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~ 293 (430)
.+.||...+..+++++ ....|++++.||++++|+.....+ ..+.. ..+.-.++.+-... ..+++.. .-+.-.++
T Consensus 391 ~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~-~~~~~~~~ 467 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF-RFGYTSID 467 (577)
T ss_pred ceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc-ccccccch
Confidence 6789999999999999 667899999999999999876655 22221 22334566664433 2233322 34444444
Q ss_pred eCCCCceEEEEeecccC---CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 294 DLRKAVQVVYKLYRSSE---HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++.........-..... ....+..+.++|.+.+.+++.+|+.|+++|..+++++.....|...++++++.|+|.+|+
T Consensus 468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence 54443322211111111 124577788999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeecC
Q 014125 371 SSSGHRRFPVDD 382 (430)
Q Consensus 371 s~~~d~~~~vw~ 382 (430)
+++.|+.+++|.
T Consensus 548 s~s~d~sv~l~k 559 (577)
T KOG0642|consen 548 SGSHDGSVRLWK 559 (577)
T ss_pred eecCCceeehhh
Confidence 998655555553
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4.9e-20 Score=151.49 Aligned_cols=240 Identities=20% Similarity=0.328 Sum_probs=175.1
Q ss_pred cceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+.+-...||+++|..++|+| +...||+||.|.+|.||.+..+.+...+.. ......+|...|--++|+|
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----------pvv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----------PVVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc----------ceEEEeecceeEEEEeecc
Confidence 44557889999999999999 667999999999999999998766544332 2335667889999999988
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
. ..+.|++++.|.+|.+|++.+|+....+. |. ..|+++.|+.+|.+++ ++.|+.|+|||.+++..
T Consensus 142 t------A~NVLlsag~Dn~v~iWnv~tgeali~l~-hp-----d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-- 207 (472)
T KOG0303|consen 142 T------APNVLLSAGSDNTVSIWNVGTGEALITLD-HP-----DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-- 207 (472)
T ss_pred c------chhhHhhccCCceEEEEeccCCceeeecC-CC-----CeEEEEEeccCCceeeeecccceeEEEcCCCCcE--
Confidence 6 34589999999999999999999887766 33 3899999999999999 56999999999988432
Q ss_pred cccccccCCCCCCCc-ceEEEEEcCCCCceEEEec---CCCeEEEEEcCCce---eeEEeeccccCeEEEEEccCCCEEE
Q 014125 209 EKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNME---LLYVLHGQEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~ 281 (430)
.....+|.+ .-..+.|-. ++.++.+|. .+..+-+||...-+ ....+. ....|.---|.++.+.++
T Consensus 208 ------v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 208 ------VSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred ------eeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEE
Confidence 111233432 233444555 444555554 36789999866543 344444 345677778899999999
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
.+|..|+.||-|.+.+....+..+..+ ....+-..+.|-|.
T Consensus 280 l~GKGD~~IRYyEit~d~P~~hyln~f-~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPFVHYLNTF-SSKEPQRGMGFMPK 320 (472)
T ss_pred EEecCCcceEEEEecCCCceeEEeccc-ccCCcccccccccc
Confidence 999899999999998875444443322 22334445666654
No 180
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=7.4e-20 Score=159.39 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=142.4
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCC-CEEEEEecCCCeEEEE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCW 293 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~ 293 (430)
...|+.+.|+|.+...|++++.||.|++|.+..+ .+...+..|...|+++.|+|-. ..|++++ .|-+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as-yd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS-YDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh-ccceeeee
Confidence 3469999999999999999999999999998754 3456778899999999999964 4566666 99999999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-eecccccccC-CeeEEEEcCCCcEEEE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK-WISGFQAAAD-TVNGFSFHPFLPMAAS 371 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~l~s 371 (430)
|+++..... ...+|...|..++|||+|+.+|+.+.||+|+||..++++ +++.-++..+ .--.|.|.-+|++++.
T Consensus 706 Dl~~~~~~~----~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 706 DLANAKLYS----RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred ehhhhhhhh----eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 999875432 236899999999999999999999999999999988764 3444433322 3356788889998887
Q ss_pred eeCCc----eeeecCCCc-----------------------------cccccCCCcEEEEeecccccc
Q 014125 372 SSGHR----RFPVDDFED-----------------------------LHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 372 ~~~d~----~~~vw~~~~-----------------------------l~~~~~d~~i~~w~~~~~~~~ 406 (430)
.+.|. .+.+|+.+. ++++..|..|.+|.+.+....
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence 76653 466663222 677888999999999876653
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.6e-19 Score=158.16 Aligned_cols=306 Identities=14% Similarity=0.166 Sum_probs=210.8
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....-..|.-.++|.++||+++++|+|..||.|.+|.--.. ..+.....+.-=|...|.+++|
T Consensus 197 ~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------------~~~~~t~t~lHWH~~~V~~L~f---- 259 (792)
T KOG1963|consen 197 SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------------SDDSETCTLLHWHHDEVNSLSF---- 259 (792)
T ss_pred cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------------ccccccceEEEecccccceeEE----
Confidence 34455667777999999999999999999999999964321 1112233334445568999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+++|.+|++|+..|.+.+|.+.+++ .+-++.... +|..+.++||+.+.+ +..|+.|.+......... ..
T Consensus 260 ---S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k-~t 329 (792)
T KOG1963|consen 260 ---SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK-ST 329 (792)
T ss_pred ---ecCCceEeecccceEEEEEeecCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecCceEEEEeccchhhh-hh
Confidence 7899999999999999999999998 334444443 899999999999888 568999999887442111 01
Q ss_pred cccccCC----CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----------cccCeEEEEEcc
Q 014125 211 YSTLKGN----KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-----------QEGGVTHVQFSR 275 (430)
Q Consensus 211 ~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----------~~~~i~~~~~~~ 275 (430)
+..+... .....+-.+.++++| ..+.++-.+..|.|.+||+-+.+.+..+.. +.-.++.++.+.
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred ccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 1111111 223455678899999 777888889999999999988766655431 223577888888
Q ss_pred CCCEEEEEec-------CC--CeEEEEeCCCCceEEEE-eecccCCccceEEEEEcC-CCC-EEEEEccCCcEEEEEcCC
Q 014125 276 DGNYLYTGGR-------KD--PYILCWDLRKAVQVVYK-LYRSSEHTNQRILFDIEP-SGR-HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 276 ~~~~l~~~~~-------~d--~~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~ 343 (430)
.|.++++.-- .| -.+++|-.....+.... ......|...+...++.+ ... .+++++.||.++||-+..
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 8999888641 23 35778876554332111 111245666555555543 333 789999999999999843
Q ss_pred CC----------eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 344 GK----------WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 344 ~~----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
.+ +...-..|..++++++|+.||.+|+.+- |++|.+||+...
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~------------------~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF------------------DDTITIWDYDTK 540 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec------------------CCEEEEecCCCh
Confidence 22 2222224788999999999997776663 567777777663
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=3e-20 Score=162.72 Aligned_cols=243 Identities=16% Similarity=0.289 Sum_probs=186.2
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
+..++++|.+.|+|++|+.||+.+|+|+.|..|.+|+-.- +..+...|+..|.|+.|
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-------------------EG~LkYSH~D~IQCMsF---- 101 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-------------------EGILKYSHNDAIQCMSF---- 101 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-------------------cceeeeccCCeeeEeec----
Confidence 4568999999999999999999999999999999997642 34467789999999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|-...|++++-.. .-+|......... .+. ...+.+++|..||++++.| .+|+|.+=+-... ..
T Consensus 102 ---NP~~h~LasCsLsd-FglWS~~qK~V~K-~ks------s~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE--ek-- 166 (1081)
T KOG1538|consen 102 ---NPITHQLASCSLSD-FGLWSPEQKSVSK-HKS------SSRIICCSWTNDGQYLALGMFNGTISIRNKNGE--EK-- 166 (1081)
T ss_pred ---CchHHHhhhcchhh-ccccChhhhhHHh-hhh------heeEEEeeecCCCcEEEEeccCceEEeecCCCC--cc--
Confidence 55677888887654 7788876543322 121 1278899999999999977 8999988754321 11
Q ss_pred cccccCCCCCCCcceEEEEEcCCC----CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.......+...+|.+++|+|.. ...+++.....++.+|.+. |+.+..-+.......|+.+.++|.+++.|| .
T Consensus 167 --~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG-s 242 (1081)
T KOG1538|consen 167 --VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG-S 242 (1081)
T ss_pred --eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc-C
Confidence 1112224667899999999953 2367888888888888875 555544344445668999999999999999 8
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
|+.+.+|.-..- .+.+.......|+.++..|++++++.|+.||+|-.|++
T Consensus 243 dk~L~~fTR~Gv-----rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 243 DKQLSLFTRDGV-----RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCceEEEeecCe-----EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999965432 22233457789999999999999999999999999987
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.5e-19 Score=149.27 Aligned_cols=278 Identities=14% Similarity=0.215 Sum_probs=187.0
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+..|...|+++.|+|+|..||+|+.+|.|.+|....-... ....+................|...|+.++|
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~v~k~lr~h~~diydL~W--- 131 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWVVKKVLRGHRDDIYDLAW--- 131 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cccchhhhCccceEEEEEecccccchhhhhc---
Confidence 456689999999999999999999999999999999987642221 0001111111223344455668899999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++..+++++.|..+++||+..|+....+..|.+ .+..++|.|-++++++ +.|...+.+.+........
T Consensus 132 ----s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-----yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 132 ----SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-----YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred ----cCCCceeeeeeccceEEEEEeccceeEeecccccc-----ccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 77899999999999999999999999999888876 8889999999999983 5666666665543211100
Q ss_pred cc-cccc-C-------------CCCCCCcceEEEEEcCCCCceEEEecC----CC-----eEEEEEcCC-ceeeEEeecc
Q 014125 210 KY-STLK-G-------------NKEGQAGIMSAIAFSPTHTGMLAIGSY----SQ-----TSAIYREDN-MELLYVLHGQ 264 (430)
Q Consensus 210 ~~-~~~~-~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg-----~v~~~d~~~-~~~~~~~~~~ 264 (430)
.. .... . ....-..-...++|+| ++.++++.+. ++ +.++|+-.. .++...+...
T Consensus 203 ~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 203 HGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP 281 (434)
T ss_pred eeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC
Confidence 00 0000 0 0001123356778899 5557766432 22 234454332 2344444444
Q ss_pred ccCeEEEEEccC-----------------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE
Q 014125 265 EGGVTHVQFSRD-----------------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 265 ~~~i~~~~~~~~-----------------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 327 (430)
..+...+.|+|- .+.+++.. ..+.|++||.++........ .-|-..++.++|+++|.+|
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l 357 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVL 357 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEe---eeeeeeecceeecCCCcEE
Confidence 455555665541 12344444 57899999998864443222 4678899999999999999
Q ss_pred EEEccCCcEEEEEcCCCCe
Q 014125 328 GTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~ 346 (430)
+..+.||...+--++.+++
T Consensus 358 ~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 358 LVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeccCCceEEEEEcchhc
Confidence 9999999988877776554
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=2.9e-21 Score=172.88 Aligned_cols=290 Identities=17% Similarity=0.211 Sum_probs=214.8
Q ss_pred eeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 47 YHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 47 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
.+..+.++.+.||...|+|+.|...|.++++|+.|..++||.+++..+.....+ |.+.|+.++
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-----------------hs~ditdla 239 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-----------------HSGDITDLA 239 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-----------------Cccccchhc
Confidence 344456678899999999999999999999999999999999988766555444 447888888
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
. +.+...+++++.|..|++|.+.++.++..+.+|.+ .|++++|+|-. .++.||++++||.+-...
T Consensus 240 v-------s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-----avtaiafsP~~---sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 240 V-------SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-----AVTAIAFSPRA---SSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred c-------chhhhhhhhcccCceEEEEecCCCchHHHHhcccc-----ceeeeccCccc---cCCCCCceEecccccccc
Confidence 7 55677899999999999999999999999988876 99999999976 566899999999872111
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. .............+.++.|.. ....+++|+.|+.-..|.+... ..+...+.-+.++.+-..+......
T Consensus 305 ~----y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 305 I----YVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred c----cCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHh------hhhccceEEEeccccccccceeeee
Confidence 0 011111111224456666665 5667899999998887765421 1222223333333333333333337
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+..+.+|++.++... ....+|...+..+.++|-. +...+++.||...|||+-.|.+++.+....+.+..-+|+++
T Consensus 374 ~~~~~vwnl~~g~l~----H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLL----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeEeeeeecccchhh----hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 889999999887432 2236788899999999965 45668999999999999999887766544567788899999
Q ss_pred CcEEEEeeCCceeeecCC
Q 014125 366 LPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~ 383 (430)
|..++.....|.+.|...
T Consensus 450 gts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CceEecCCCCCceEEecc
Confidence 999999988888888743
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.8e-19 Score=135.35 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=158.4
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC----------ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
+|.+++|++|..+|+|.+..+.+- ..+...+. |..+++.++|+ ..+|+++.||.|+-|..+..
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa-----hdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA-----HDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEE 91 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc-----cCCCeeeeeee--hhheeeccCceEEEeeehhh
Confidence 778999999999999999987542 12222333 34499999997 45777777899999988754
Q ss_pred CCcccccc--cccCCC---CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 205 GRDFEKYS--TLKGNK---EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 205 ~~~~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
.+...... ..+... ...--.|++|...| ..+-++.++.|+.++-||+++|+..+.+++|...|.++.--.....
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 33111110 011000 11123588999999 4445555568999999999999999999999999999998555567
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecc------cC-CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRS------SE-HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
+++|+ .||++|+||.++.+.... +... .. ....|-+++. +..+|++|+. ..+.+|.+++.++...+.
T Consensus 171 ilsG~-EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 171 ILSGA-EDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred eeecC-CCccEEEEeccccceeEE-eccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe-
Confidence 89999 999999999999865432 1110 11 1234555554 4568888765 469999999998887776
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
-..+|..+.|.. ..+++++..+.+.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 345677777753 345555544444444
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=3.5e-19 Score=140.74 Aligned_cols=286 Identities=17% Similarity=0.242 Sum_probs=198.3
Q ss_pred ceeEEEECc--C-CceEEEecC----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 62 FLKGIKWSP--D-GSSFLTSSE----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 62 ~v~~~~~sp--~-~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.++.||. + +.+||.|+. ...|.|-.+.... ........+.|.-+++.+.|.|.....
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s--------------~e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS--------------GELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC--------------CceeccCCCCCCCCccceEecCCcccc
Confidence 477888883 3 447888875 3566666554221 111122225677799999998865443
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC--ce--eeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG--LL--RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~ 208 (430)
.| .+||+++ ..+++|.+... +. ...+..........+++++.|+.-...++ ++-|-+..|||++.+..
T Consensus 112 ~p--dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-- 185 (364)
T KOG0290|consen 112 YP--DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-- 185 (364)
T ss_pred Cc--chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--
Confidence 44 3565543 45999998742 21 22233333334556899999988665544 44899999999987511
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccCC-CEEEEEe
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDG-NYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~-~~l~~~~ 284 (430)
...+..+-.|...|..++|...+..+||+.+.||.|++||++..+....+ .....+...++|++.. +++++-.
T Consensus 186 ---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~ 262 (364)
T KOG0290|consen 186 ---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA 262 (364)
T ss_pred ---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh
Confidence 12333346788899999999978889999999999999999976543332 2224578899998754 5677766
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCC------eecccccccCCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGK------WISGFQAAADTV 357 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~v 357 (430)
.....|.+.|+|.+..++..+ ..|...|+.++|.|.. ..|++++.|..+.+||+...- ++..+. -.+.|
T Consensus 263 ~dS~~V~iLDiR~P~tpva~L---~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EV 338 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPCTPVARL---RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEV 338 (364)
T ss_pred cCCceEEEEEecCCCcceehh---hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-cccee
Confidence 455789999999887665554 7899999999999964 689999999999999997531 222333 45689
Q ss_pred eEEEEcCCC-cEEEEeeC
Q 014125 358 NGFSFHPFL-PMAASSSG 374 (430)
Q Consensus 358 ~~~~~~~~~-~~l~s~~~ 374 (430)
+.+.|++.. ..++.+..
T Consensus 339 Nqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 339 NQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eeeeecccCCCEEEEEec
Confidence 999999754 46666653
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.6e-19 Score=148.47 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=152.5
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCCC-EEEEEecCCCe
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPY 289 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~ 289 (430)
..+|.++|..++|+|.+.+.+|+|++|.+|.||.+..+ +++..+.+|...|--++|+|... .|++++ .|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag-~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG-SDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc-CCce
Confidence 47899999999999999999999999999999998754 45778889999999999999754 566666 8999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPM 368 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 368 (430)
|.+|++.++...+. + .|...|+++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.+
T Consensus 156 v~iWnv~tgeali~-l----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT-L----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred EEEEeccCCceeee-c----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 99999999865543 2 3999999999999999999999999999999999999998888887 3566778888885
Q ss_pred EEEee---CCceeeecCCCc----------------------------cccccCCCcEEEEeecccc
Q 014125 369 AASSS---GHRRFPVDDFED----------------------------LHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 369 l~s~~---~d~~~~vw~~~~----------------------------l~~~~~d~~i~~w~~~~~~ 404 (430)
+.||- ++..+.+||.+. .+++-.|+.||-+.+..+.
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55553 367889996543 3455679999999998665
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=6e-19 Score=150.82 Aligned_cols=271 Identities=13% Similarity=0.190 Sum_probs=186.7
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.|...|.|+.|+.....+.+++.+..+.-|++..... .....+. ...+. .+.-.|....-...
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~------df~pt----------~~h~~~rs~~~g~~ 74 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPD------DFVPT----------DMHLGGRSSGGGKG 74 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCc------ccCCc----------cccccccccCCCCC
Confidence 4566678999998776666666554444455543221 1111100 00000 00000100000223
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
...|+.++.||.+.+.+- .++.......|.. .+.+-.|+|+|.-|+ +|.||.|++|.-.. .++.
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~-----A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---------MLRS 139 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAA-----AISSGRWSPDGAGLLTAGEDGVIKIWSRSG---------MLRS 139 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhh-----hhhhcccCCCCceeeeecCCceEEEEeccc---------hHHH
Confidence 457899999999998874 4555556666655 888999999998887 67999999998542 1222
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.......+|.|++|.|+..+.+.+.+ +.+.+=.+.....+-..++|.+-|.++.|++....++++| .|-..++||..
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~ 216 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQ 216 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeeccc
Confidence 22334567999999998777777665 5566666666666778889999999999999999999999 99999999986
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.. .++....|..+|++++|.|+ ..++.++.+ ++++= +...+.|..++|++||..++.|+..|
T Consensus 217 G~-----~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GA-----NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred Cc-----ccccCChhccceeeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCc
Confidence 54 34555789999999999999 556666543 44411 12346799999999999999999999
Q ss_pred eeeec
Q 014125 377 RFPVD 381 (430)
Q Consensus 377 ~~~vw 381 (430)
.+.+-
T Consensus 279 ~v~~A 283 (737)
T KOG1524|consen 279 QLIVA 283 (737)
T ss_pred eEEEe
Confidence 87764
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.8e-18 Score=130.60 Aligned_cols=281 Identities=12% Similarity=0.177 Sum_probs=189.6
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCccc-ceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE-ASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.|.+-+++|.+++|+.|..+|.|-+..+.+...-.. ..+... ...+..|.++++.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------~~~gk~~iv~eqahdgpiy~~~f~---------d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------EPPGKLKIVPEQAHDGPIYYLAFH---------DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc--------CCCCCcceeeccccCCCeeeeeee---------hhh
Confidence 366778999999999999999999999875321111 111111 12236788999999993 335
Q ss_pred EEEEeCCCcEEEEeccCCce------eeeeec--ccccccccceEEEEECCCCcEE-EEEcCCeEEEEEcCCCCCccccc
Q 014125 141 FASTTRDHPIHLWDATTGLL------RCTYRA--YDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~------~~~~~~--~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
|++|+ ||.|+=|....... ....+. +........|+++-..|...-+ .++.|+.++-||+++
T Consensus 75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-------- 145 (325)
T KOG0649|consen 75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-------- 145 (325)
T ss_pred eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC--------
Confidence 66665 59999998754321 111111 1212334578899999876544 488999999999988
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc----------cCeEEEEEccCCCEEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE----------GGVTHVQFSRDGNYLY 281 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~ 281 (430)
..+...+.+|+..+.++.-.. ....+++|++||++++||.++++.+..+.... ..|.+++. +..+|+
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlv 222 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLV 222 (325)
T ss_pred CEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEE
Confidence 356666789999999999855 45589999999999999999999887765321 23555655 556787
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
+|+ ...+.+|.++........ .-...+..+.|.. ..++++++.+.|.-|.+. |.+-...+..........
T Consensus 223 CGg--Gp~lslwhLrsse~t~vf-----pipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s 292 (325)
T KOG0649|consen 223 CGG--GPKLSLWHLRSSESTCVF-----PIPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSAS 292 (325)
T ss_pred ecC--CCceeEEeccCCCceEEE-----ecccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCccceeeec
Confidence 775 788999999987554322 2344566677764 478888888889999876 444444444444556666
Q ss_pred EcCC-CcEEEEeeCCceeeec
Q 014125 362 FHPF-LPMAASSSGHRRFPVD 381 (430)
Q Consensus 362 ~~~~-~~~l~s~~~d~~~~vw 381 (430)
|+.. -++|-.++...++.|.
T Consensus 293 ~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 293 WQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccCCceEEEEecccceeeeee
Confidence 6533 2344445555555544
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.5e-19 Score=155.41 Aligned_cols=268 Identities=16% Similarity=0.213 Sum_probs=188.2
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++..|.+.|+.++|.|....|++|+.||++.+|++...... ..........+..|.++|.|++.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------~~~~~epi~tfraH~gPVl~v~v------ 352 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------AEKDVEPILTFRAHEGPVLCVVV------ 352 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------cccceeeeEEEecccCceEEEEe------
Confidence 378899999999999999999999999999999999431110 01112233456678899999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc----------eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVH 202 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~ 202 (430)
.+++..+++|+-||+|+.|++.... ....+. +|...++.+++++....|+ ++.||+++.|+..
T Consensus 353 -~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~-----Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 353 -PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL-----GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred -cCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee-----ccccceeeeeecccccceeeecCCceEEeeccC
Confidence 6789999999999999999765321 112233 3445899999999888777 6699999999986
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-------cccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------QEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------~~~~i~~~~~~~ 275 (430)
.... ..+.. ....+...++.+-.......++...-+.-.++++.....+..+.. ....+..+.++|
T Consensus 427 ~~~~--~~f~~-----~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 427 EESP--CTFGE-----PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred CcCc--cccCC-----ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 5332 11111 112233455555432222333333333333344444433333321 113477888999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.+...+++. .|+.|+++|..++... .....|...++++++.|+|.+|++++.|+++++|.+....++.....|.
T Consensus 500 ~~~~~~~~h-ed~~Ir~~dn~~~~~l----~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 500 TADITFTAH-EDRSIRFFDNKTGKIL----HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCCeeEecc-cCCceecccccccccc----hheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999 9999999999887533 3335788899999999999999999999999999998777766665553
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=3.9e-17 Score=144.03 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=157.0
Q ss_pred CceeEEEECcCCceEEEec-CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 61 NFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+....++++|++++|++++ .++.|.+|++......... ...........+++ +|+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~---------------~~~~~~~~p~~i~~-------~~~g~ 92 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA---------------AESPLPGSPTHIST-------DHQGR 92 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------------eeecCCCCceEEEE-------CCCCC
Confidence 4577899999999887664 4788999998632110000 00111123345556 78899
Q ss_pred eEEEEeC-CCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCccccccccc
Q 014125 140 VFASTTR-DHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 140 ~l~~~~~-dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.|++++. ++.|.+|++.+. .......... ....+.+++++|++++++ +. .++.|.+||+...+..........
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQIIE---GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeecc---CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 8888764 789999999643 2211111111 111456788999999887 44 679999999976322110000000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCC--c--eeeEEeecc------ccCeEEEEEccCCCEEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDN--M--ELLYVLHGQ------EGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~--~--~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~ 284 (430)
. .........+.|+|++. +++++. .+++|.+|++.. + +.+..+..+ ......+.++|++++++++.
T Consensus 170 -~-~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 170 -T-TVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred -e-cCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 0 01123367899999544 555554 499999999973 2 223333221 11234688999999999987
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQ 342 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~ 342 (430)
..++.|.+|++............... ......+.++|+|++|+++.. ++.|.+|+++
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 56899999999654322212111111 134457899999999998775 8899999875
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-17 Score=154.32 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=175.4
Q ss_pred eeeecceeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeec-CCCeeee
Q 014125 47 YHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYD 124 (430)
Q Consensus 47 ~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 124 (430)
......+..+..|+..|..++.+++ +.+++|||.||+|++|+...-.-. ........... .+..+.+
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-----------~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-----------GGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-----------cceeeeeEEEeccCCceEE
Confidence 3434556678899999999998875 599999999999999998743211 00111112222 5667777
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeee-cccccccccceEEE-EECCC-Cc-EEE-EEcCCeEE
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYR-AYDAVDEITAAFSV-AFNPT-GT-KIF-AGYNKSVR 197 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~-~~~~~~~~~~v~~~-~~~~~-~~-~l~-~~~d~~i~ 197 (430)
+... +.+..+|.++.||.|++.++... ....... ........+.+.++ +|... +. .++ +...+.|.
T Consensus 1104 vt~~-------~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1104 VTMC-------GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred EEec-------cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 7774 36889999999999999998762 1111111 11111111233333 33322 22 344 55788999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRD 276 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~ 276 (430)
.||++.....+. .......+.|++++.+| ..+++++|+..|.+.+||++-+.++.... ++..+|+.+..+|-
T Consensus 1177 ~~D~r~~~~~w~------lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWR------LKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred EecchhhhhHHh------hhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 999986432221 11233457799999999 77799999999999999999887776654 33467888877764
Q ss_pred C---CEEEEEec-CCCeEEEEeCCCCceEEEEeec-c----------c----CCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 277 G---NYLYTGGR-KDPYILCWDLRKAVQVVYKLYR-S----------S----EHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 277 ~---~~l~~~~~-~d~~i~i~d~~~~~~~~~~~~~-~----------~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
. ...++++. ..+.|.+|++.++......... . . .+.-....+.+...+..+.+|+.|..|+
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence 3 46666664 5788999999987443222111 0 0 1111222333444457899999999999
Q ss_pred EEEcCC
Q 014125 338 IYDLQT 343 (430)
Q Consensus 338 vwd~~~ 343 (430)
.||...
T Consensus 1330 ~wD~~~ 1335 (1431)
T KOG1240|consen 1330 KWDPTR 1335 (1431)
T ss_pred eccCCC
Confidence 999864
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.5e-16 Score=146.64 Aligned_cols=291 Identities=27% Similarity=0.453 Sum_probs=213.4
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
.....+.+|...|.+++|+|+++++++++. |+.+++|++...... .....|...|.+++|
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~-- 206 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL-----------------STLAGHTDPVSSLAF-- 206 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE-----------------EeeccCCCceEEEEE--
Confidence 445678899999999999999999999886 999999999863221 122226689999999
Q ss_pred ccCccCCCCc-eEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCC
Q 014125 130 HMSASDPTSC-VFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 130 ~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~ 206 (430)
+|++. .+++++.|+.|++||...+.... .+..+.. .. ...|+|++.+++ ++.++.+++|++.....
T Consensus 207 -----~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 207 -----SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -----cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 45666 55556999999999988777666 4554443 32 228999997777 55999999999986543
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.. ... ..|...+.++.|+| ....+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.++
T Consensus 276 ~~---~~~----~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 276 LL---RTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred EE---EEE----ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 11 111 45678899999999 55566668888899999998877666555 7777899999943335666663
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE-EccCCcEEEEEcCCCCeecccccccCCeeEEEEc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT-GGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 363 (430)
..|+.+.+|++.... ..... .....+..+.+.+ ...+.. +..++.+.+|+............+...+....+.
T Consensus 348 ~~d~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (466)
T COG2319 348 SDDGTIRLWDLRTGK-PLKTL----EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421 (466)
T ss_pred cCCCcEEeeecCCCc-eeEEe----cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEEC
Confidence 378999999998875 22111 1112278888888 544444 6889999999999888777666544788999999
Q ss_pred CCCcEEEEeeCCceeeecCCCc
Q 014125 364 PFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
+++..+++++.++.+.+|+...
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 422 PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEecCCCcEEEEeccC
Confidence 9999999987766666665544
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.6e-16 Score=128.86 Aligned_cols=239 Identities=17% Similarity=0.251 Sum_probs=170.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..+..+.|+.|...|..|+.|| .++|+.+..... ......+..|--+-|+ ..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-----------------~~~~~~~~~IvEmLFS---------SSL 58 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-----------------FSKDTEGVSIVEMLFS---------SSL 58 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh-----------------hcccCCCeEEEEeecc---------cce
Confidence 4567778999999999999998 478877643210 0111122345555552 335
Q ss_pred EEEEeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 141 FASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 141 l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+|..+.+ +.+++++...+..++.+.... +|.++.++. +.|++.-...|+|||++... ...++.. .
T Consensus 59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt------~IL~VrmNr--~RLvV~Lee~IyIydI~~Mk----lLhTI~t-~ 125 (391)
T KOG2110|consen 59 VAIVSIKQPRKLKVVHFKKKTTICEIFFPT------SILAVRMNR--KRLVVCLEESIYIYDIKDMK----LLHTIET-T 125 (391)
T ss_pred eEEEecCCCceEEEEEcccCceEEEEecCC------ceEEEEEcc--ceEEEEEcccEEEEecccce----eehhhhc-c
Confidence 5555544 359999999988888877665 888999864 45666655569999998631 1122211 1
Q ss_pred CCCCcceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC-eEEEEeC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-YILCWDL 295 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-~i~i~d~ 295 (430)
..+...+.++.+++ .+.+++. ....|.|.+||..+-+++..+..|.+++.+++|+++|.+||+++ ..| .||+|.+
T Consensus 126 ~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVIRVf~v 203 (391)
T KOG2110|consen 126 PPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVIRVFSV 203 (391)
T ss_pred CCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEEEEEEc
Confidence 23344466666665 3445554 23468999999999999999999999999999999999999999 565 5799999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.++... +.+.+ ......|.+++|+|++.+|++.+..++|+||.+..
T Consensus 204 ~~G~kl-~eFRR-G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQKL-YEFRR-GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCccEe-eeeeC-CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 888544 34333 33467789999999999999999999999999874
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=2.7e-18 Score=155.98 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=159.1
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccC
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATT 157 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~ 157 (430)
+..|.+||.+... ......+...+...+| +|+|+.|+..+.+ ..|++||+.+
T Consensus 183 ~~~i~i~d~dg~~------------------~~~lt~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~t 237 (429)
T PRK01742 183 PYEVRVADYDGFN------------------QFIVNRSSQPLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRS 237 (429)
T ss_pred eEEEEEECCCCCC------------------ceEeccCCCccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCC
Confidence 4689999886432 1122344567888999 7899999887654 3699999988
Q ss_pred CceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCC
Q 014125 158 GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 235 (430)
++....... .. ....++|+|||+.|+. + .+|.+.||.++....... . ...+...+....|+|++.
T Consensus 238 g~~~~l~~~-~g-----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~---~----lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 238 GARKVVASF-RG-----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS---Q----LTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred CceEEEecC-CC-----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE---e----eccCCCCcCCEEECCCCC
Confidence 764332211 11 2336899999998884 3 577766664432221111 1 123445578899999666
Q ss_pred ceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccc
Q 014125 236 GMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314 (430)
Q Consensus 236 ~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 314 (430)
.+++++..++...+|+++.. .....+ .+.. ....|+|+|++|+..+ .++ +.+||+.++.... +.. .. .
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~~--lt~--~~--~ 373 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTEV--LSS--TF--L 373 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeEE--ecC--CC--C
Confidence 56666667888888876532 222223 3333 4678999999999887 554 5669998775332 111 11 2
Q ss_pred eEEEEEcCCCCEEEEEccCCcEEEEEcC--CCCeecccccccCCeeEEEEcCC
Q 014125 315 RILFDIEPSGRHLGTGGQDGLVHIYDLQ--TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 315 v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
...+.|+|+|++|+.++.++.+.+|.+. +++.+..+..|.+.+...+|+|-
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 2457899999999999999988888763 58888888888888999999985
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=147.55 Aligned_cols=241 Identities=15% Similarity=0.215 Sum_probs=161.8
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.+.+--|+.|-.-|.|++.|....+..+.+.... ......++++.|-|.+.. +++-.+|.+++||........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t---- 256 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT---- 256 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC----
Confidence 5677788999999999999987633322222221 122348999999886643 334589999999874321100
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
. .+....+ .+..++.....+ ..+..++..+.--.+.|...+|+|||++|++.+ .||.+||
T Consensus 257 ----------~--p~~~~~k-~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRv 316 (636)
T KOG2394|consen 257 ----------A--PSYQALK-DGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRI 316 (636)
T ss_pred ----------C--CcccccC-CCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEe-cCceEEE
Confidence 0 0001111 222333222111 112244444544566899999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||..+.... ...+..-+...|++|||||+||++|++|..|.||.+...+.+..-++|.+.|..++|.|. ..+.
T Consensus 317 F~fdt~eLl----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy---tt~~ 389 (636)
T KOG2394|consen 317 FDFDTQELL----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY---TTST 389 (636)
T ss_pred eeccHHHHH----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc---cccc
Confidence 999875321 222445678999999999999999999999999999999999999999999999999972 1111
Q ss_pred e-------CCceee------------ecC---------------CCccccccCCCcEEEEeeccccccc
Q 014125 373 S-------GHRRFP------------VDD---------------FEDLHLSGDENCVSVWSFLYASMME 407 (430)
Q Consensus 373 ~-------~d~~~~------------vw~---------------~~~l~~~~~d~~i~~w~~~~~~~~~ 407 (430)
. .|+... .|. .-.+.++|.|-.+-+||+..+.+..
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 1 111111 111 1127788999999999998765543
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.8e-18 Score=136.54 Aligned_cols=197 Identities=16% Similarity=0.210 Sum_probs=145.6
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
..+|++-..|.|++||..+++.+..++.+.. .+..+.|... ...+. ++.||+|++||++...+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~----- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI----- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----
Confidence 5789999999999999999999999998876 6667777663 33344 669999999999985443221
Q ss_pred CCCCCC-CcceEEEEEcCCCCceEEEecC----CCeEEEEEcCCcee-eEE-eeccccCeEEEEEccCCC-EEEEEecCC
Q 014125 216 GNKEGQ-AGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNMEL-LYV-LHGQEGGVTHVQFSRDGN-YLYTGGRKD 287 (430)
Q Consensus 216 ~~~~~~-~~~v~~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~-~~~-~~~~~~~i~~~~~~~~~~-~l~~~~~~d 287 (430)
....+ ..+..+++.+- ..+++++|++ +-.|.+||.|..+. +.. ...|...|++++|+|... .|++|+ .|
T Consensus 111 -~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vD 187 (376)
T KOG1188|consen 111 -SWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VD 187 (376)
T ss_pred -eccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-cc
Confidence 11222 24667777765 5668888864 56799999998765 443 457999999999999765 555666 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
|.|.+||+......- .+...-.+...|..+.|..++ +.|.+-+..+...+|+++.+.....
T Consensus 188 GLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred ceEEeeecCCCcchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 999999998763321 222223566779999999877 4578888899999999998765443
No 198
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-18 Score=140.56 Aligned_cols=277 Identities=14% Similarity=0.239 Sum_probs=183.7
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccc-ccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.+-|.++.|..+|.+||||..+|.|.++.-...... +.... .+..+...........-.++|..+.|.+. .+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-----~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-----GNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-----CCc
Confidence 456899999999999999999999999975533210 11000 00001111111112223468999999773 345
Q ss_pred ceEEEEeCCCcEEEEeccCCceee---------------ee-----eccc-----------ccccccceEEEEECCCCcE
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRC---------------TY-----RAYD-----------AVDEITAAFSVAFNPTGTK 187 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~---------------~~-----~~~~-----------~~~~~~~v~~~~~~~~~~~ 187 (430)
..++..+.|.+|++|.+....... .+ ..+. ...|.--|.++.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 678888999999999976432111 01 1100 1123446889999999999
Q ss_pred EEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee----EEe--
Q 014125 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL----YVL-- 261 (430)
Q Consensus 188 l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~----~~~-- 261 (430)
++++.|=.|.+|+++-....+............-..-|++..|+|..-++++-++..|+|++-|++..... ..+
T Consensus 179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 99999999999999876655543332222223334568999999988899999999999999999853211 111
Q ss_pred ----------eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC---------Ccc---ceEEEE
Q 014125 262 ----------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE---------HTN---QRILFD 319 (430)
Q Consensus 262 ----------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~---~v~~~~ 319 (430)
..--..|..+.|+++|+++++-. =-+|++||+.....+......... ... .-..++
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 11124688899999999998753 479999999655444433221110 011 223588
Q ss_pred EcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 320 IEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|+.++.++++|+..+.++++++..|
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EcCCcceEecccccceEEEecCCCC
Confidence 9999999999999999999996543
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.7e-17 Score=136.10 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=141.9
Q ss_pred EEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc
Q 014125 177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (430)
Q Consensus 177 ~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 255 (430)
..++|+++|..++++ .||++|+|+.... ........|...|.++.|+| ++.+|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC
Confidence 589999999999965 9999999997552 22233456778899999999 67788888888 9999999999
Q ss_pred eeeEEeecc--ccCeEEEEEccCC---C-EEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEE
Q 014125 256 ELLYVLHGQ--EGGVTHVQFSRDG---N-YLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 256 ~~~~~~~~~--~~~i~~~~~~~~~---~-~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
..+...... ......+.|+.++ . ++++.-..-+.|+.||+...... ..+..........|++++.+++|++++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 766555422 2346677888776 2 23333324566777666433221 111112123345799999999999999
Q ss_pred EEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 329 TGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
.|+.||.|-|++..+.+.++.. +.|...|+.+.|+|+.+++++-+.+....|
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 9999999999999988776655 579999999999999998888776544433
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=8.7e-17 Score=131.61 Aligned_cols=233 Identities=14% Similarity=0.214 Sum_probs=166.8
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE--cCCeEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVR 197 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~ 197 (430)
.+..+.| +.+...|..|+.|| .+++....-........ ....|..+-|+.. +++ ++ ..+.++
T Consensus 7 ti~~~~~-------Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~-----~~~~IvEmLFSSS--LvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 7 TINFIGF-------NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT-----EGVSIVEMLFSSS--LVAIVSIKQPRKLK 71 (391)
T ss_pred ceeeeee-------ccceeEEEccCCCc-eeEEecCchHHhhcccC-----CCeEEEEeecccc--eeEEEecCCCceEE
Confidence 4555556 67788899999999 78888765433111111 1125666667643 444 44 335688
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec---cccCeEEEEEc
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHVQFS 274 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~i~~~~~~ 274 (430)
++++...... .. ......|.++.++. +.|+++-.+. |+|||+++.+.+.++.. +...+.+++++
T Consensus 72 v~~~Kk~~~I----Ce-----~~fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 72 VVHFKKKTTI----CE-----IFFPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred EEEcccCceE----EE-----EecCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 8888653110 00 11234588888854 3566665544 99999999999887763 34456677777
Q ss_pred cCCCEEEEEe-cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc-EEEEEcCCCCeeccccc
Q 014125 275 RDGNYLYTGG-RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHIYDLQTGKWISGFQA 352 (430)
Q Consensus 275 ~~~~~l~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~ 352 (430)
+.+.+++.-+ ...|.|.+||+.+-.... .+ ..|.+.+.+++|+++|.+||++++.|+ |||+.+.+|+.+++|+.
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I---~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDTINLQPVN-TI---NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred CCCceEEecCCCCCceEEEEEcccceeee-EE---EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 7777888644 256899999998875432 33 589999999999999999999999998 89999999999999975
Q ss_pred ccC--CeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 353 AAD--TVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 353 ~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
... .|.+++|+|++++|++.+..++|+|+..+.
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 544 588999999999999999988888885443
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.3e-16 Score=128.16 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=166.2
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
..+|+|.+|++|+..+|.+.....|.||.....+. .........|...|+.++| +|..+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------w~~~htls~Hd~~vtgvdW-------ap~sn 68 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------WEPAHTLSEHDKIVTGVDW-------APKSN 68 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------ceeceehhhhCcceeEEee-------cCCCC
Confidence 46799999999999999999999999999876542 1122234457789999999 66788
Q ss_pred eEEEEeCCCcEEEEec-cCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.|++|+.|..-++|.. ..++...++... .....++++.|+|.+..+++| ....|.||-++..+.=+ ..+..
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLl---RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW----VsKhi 141 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLL---RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW----VSKHI 141 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEE---EeccceeeEeecCcCceEEeccCccEEEEEEEeccccee----hhhhh
Confidence 9999999999999998 444433333221 122288999999999999966 66788888887633211 11222
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-----C-------------ceeeEEeeccccCeEEEEEccCCCE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-----N-------------MELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
...+.+.|+++.|+| ++-++++|+.|+..++|..- + |+.+..+....+.+..+.|+|+|..
T Consensus 142 kkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred CCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 345667899999999 77899999999999998631 1 1223333345678999999999999
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
|+-.+ .|..+.+-|...+.+...... ...-+..++.|-.
T Consensus 221 lawv~-Hds~v~~~da~~p~~~v~~~~---~~~lP~ls~~~is 259 (361)
T KOG1523|consen 221 LAWVG-HDSTVSFVDAAGPSERVQSVA---TAQLPLLSVSWIS 259 (361)
T ss_pred eeEec-CCCceEEeecCCCchhccchh---hccCCceeeEeec
Confidence 99999 999999999887653322221 1224555666644
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8e-18 Score=140.00 Aligned_cols=201 Identities=23% Similarity=0.296 Sum_probs=150.7
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
.+++|+++|..|++|+.||++|||++++.....+ +..|...|.++.| +|||+.|++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~-----------------e~~~~~eV~DL~F-------S~dgk~las 203 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE-----------------EIAHHAEVKDLDF-------SPDGKFLAS 203 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh-----------------hHhhcCcccccee-------CCCCcEEEE
Confidence 7899999999999999999999999876543322 3345579999999 889999999
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC---cEE-EEE--cCCeEEEEEcCCCCCcccccccccCC
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKI-FAG--YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l-~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
-+.| ..+||+..++..+........ ......+.|+.++ .+. ++. ..+.|+.|++...... .+....+.
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~ 277 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKK 277 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhh
Confidence 9999 899999999966665543222 1245577787776 333 333 4577888877543221 00111111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
......|++++.++ ++++++.|+.||.|.+++..+.+.++.. +.|...|+.+.|+|+.+++++.+ .|....+..+.
T Consensus 278 -~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~ 354 (398)
T KOG0771|consen 278 -IKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLA 354 (398)
T ss_pred -hhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEe
Confidence 12234699999999 7789999999999999999988776554 47899999999999999999988 88888887765
Q ss_pred C
Q 014125 297 K 297 (430)
Q Consensus 297 ~ 297 (430)
.
T Consensus 355 v 355 (398)
T KOG0771|consen 355 V 355 (398)
T ss_pred e
Confidence 4
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.6e-16 Score=128.48 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=179.6
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+-.+..++|++.-..+|++..|-.|++|+-... ....+.......|.+++|.|. .+.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-----------------~pt~Lks~sQrnvtclawRPl------sas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-----------------CPTKLKSVSQRNVTCLAWRPL------SAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-----------------CCceecchhhcceeEEEeccC------Ccc
Confidence 445888999998788999999999999987641 122233334568999999885 234
Q ss_pred eEEEEeCCCcEEEEeccCC----ceee-----eeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCcc
Q 014125 140 VFASTTRDHPIHLWDATTG----LLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~----~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~ 208 (430)
.|+.|+..| |.+|..... ..+. ..+.....+| .+|+++.|++||..+++ + .|..|+|||.+++...
T Consensus 155 elavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~- 231 (445)
T KOG2139|consen 155 ELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI- 231 (445)
T ss_pred eeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-
Confidence 788888888 999986532 1111 0111111122 48999999999999994 4 7899999999885331
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.+. ....+.++-+.|+| ++..|++++.|+..++|+..............+.|...+|+|.|++|+.++ .|
T Consensus 232 ----pL~---~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~--sg 301 (445)
T KOG2139|consen 232 ----PLI---PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC--SG 301 (445)
T ss_pred ----ccc---ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE--cC
Confidence 111 22345688999999 566888889999999996554333223333456899999999999888776 34
Q ss_pred eEEEEeCCCCceE-----------EEEeec---------ccCCccceEEEEEcCCCCEEEEEccCC--------cEEEEE
Q 014125 289 YILCWDLRKAVQV-----------VYKLYR---------SSEHTNQRILFDIEPSGRHLGTGGQDG--------LVHIYD 340 (430)
Q Consensus 289 ~i~i~d~~~~~~~-----------~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~vwd 340 (430)
.-++|.+.-..+. ...... ..-..+.+.+++|+|.|.+||+.-..+ .|.+||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 4455554321110 000000 011245678899999999999876543 366777
Q ss_pred cCCCCeecccc-c--ccCCeeEEEEcC---CCcEEEEeeCCceee
Q 014125 341 LQTGKWISGFQ-A--AADTVNGFSFHP---FLPMAASSSGHRRFP 379 (430)
Q Consensus 341 ~~~~~~~~~~~-~--~~~~v~~~~~~~---~~~~l~s~~~d~~~~ 379 (430)
.+..-.+.-.. + ......-|.|+| ++.+|..+=..|.+.
T Consensus 382 tr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 382 TRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred ccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 76543322110 1 011245566665 344555554444333
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=4e-19 Score=149.23 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=187.9
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
|-|....++.+|..|+.|+.-|.+..+|+.+++....+.... .|.++.|-.+.++++++..+.++|||-...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-- 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-- 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHHhhhhceEEEecCCCc--
Confidence 344444558899999999999999999999999988887765 788999999999999999999999996531
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.+. .+ .....|..+.|-| .-.+|++++..|.++--|+.+|+.+..+..-.+.+..++-+|-+..+-+|. .
T Consensus 202 ElH---Cl-----k~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-s 271 (545)
T KOG1272|consen 202 ELH---CL-----KRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-S 271 (545)
T ss_pred EEe---eh-----hhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-C
Confidence 111 11 1124588899999 667899999999999999999999999988888999999999998888888 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
.|+|.+|......... ....|.++|.++++.++|+|++|.+.|..++|||++....+.++.. ..+...+++|..|
T Consensus 272 nGtVSlWSP~skePLv----KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLV----KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG 346 (545)
T ss_pred CceEEecCCCCcchHH----HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc
Confidence 9999999988765433 3357999999999999999999999999999999998876666654 4467788888544
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
+++++....+.||.
T Consensus 347 --lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 347 --LLALSYGDHVQIWK 360 (545)
T ss_pred --ceeeecCCeeeeeh
Confidence 33444445677783
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=128.31 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=181.8
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE-E
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-S 143 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~ 143 (430)
-++|||+|+++|+++.- .+.|-|..+-+...-+ ..-..|..+.| ..|..+++ .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf------------------~cldki~yieW-------~ads~~ilC~ 66 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF------------------LCLDKIVYIEW-------KADSCHILCV 66 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH------------------HHHHHhhheee-------eccceeeeee
Confidence 37899999999999876 6777777654432111 11145666777 44555544 5
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
...++.|.+|++...+....+..... ++.+++|+|+|+.|+ .+ .+-.|.+|.+.+...... .-.
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---------~~p 132 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---------PHP 132 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---------ccc
Confidence 57788999999998888777776554 889999999998877 44 789999999987432111 111
Q ss_pred CcceEEEEEcCCCCceEEEecC-C-----------------------------------CeEEEEEcCCceeeEEeeccc
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSY-S-----------------------------------QTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~-d-----------------------------------g~v~~~d~~~~~~~~~~~~~~ 265 (430)
...+..++|+| ++++.+..+. | ..+.+||.--.-.+..+. ..
T Consensus 133 K~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~ 210 (447)
T KOG4497|consen 133 KTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RG 210 (447)
T ss_pred ccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-ec
Confidence 12246667777 3334443322 1 123334322111111111 22
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCC---------------Cc-------------------------------
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK---------------AV------------------------------- 299 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~---------------~~------------------------------- 299 (430)
-.+..++|+|.+++|++|+ .|+.+|+.+--+ ..
T Consensus 211 lG~k~v~wsP~~qflavGs-yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGS-YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred cceeEEEeccccceEEeec-cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 4688999999999999999 999988754210 00
Q ss_pred -----------eE--EEEe---ecccCCccceEEEEEcCCCCEEEEEccC--CcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 300 -----------QV--VYKL---YRSSEHTNQRILFDIEPSGRHLGTGGQD--GLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 300 -----------~~--~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
.. ...+ .........+.-++|++|..|+++-.+. +.+.+||++..+....+. ...+|....
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~ 368 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFE 368 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEE
Confidence 00 0000 0011123446679999999999987653 569999999877655554 557999999
Q ss_pred EcCCCcEEEEeeCCceeeecCCCc
Q 014125 362 FHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 362 ~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
|+|....|+.+.+..++.+|...-
T Consensus 369 WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 369 WDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eCCCCceEEEEcCCceEEEEcCCC
Confidence 999999999999888888886544
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=9.4e-17 Score=128.92 Aligned_cols=201 Identities=16% Similarity=0.182 Sum_probs=158.9
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
+|+|.+|++|...++.+ ....|.||.....+ .++ ....+..|...|+.++|+| ..+.|++++.|..-++|...
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~----~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWE----PAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCC-Cce----eceehhhhCcceeEEeecC-CCCceeEccCCCCccccccC
Confidence 89999999999999977 67799999987632 122 2233467888999999999 78899999999999999984
Q ss_pred Cc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 254 NM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 254 ~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
.+ ++.-.+..+....+++.|+|.++.+++++ ....|.+|-++....-.........+.+.|++++|+|++-+|++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS-gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS-GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEecc-CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 44555666889999999999999999999 889999988776543222222224567889999999999999999
Q ss_pred ccCCcEEEEEcC-----C-------------CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 331 GQDGLVHIYDLQ-----T-------------GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 331 ~~dg~i~vwd~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.|+..+|+..- . |+++.++....+.|..+.|+|+|..|+-.+.|..+.+-|
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 999999998742 1 233444544567899999999999999999888887753
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=7.2e-15 Score=118.20 Aligned_cols=240 Identities=13% Similarity=0.213 Sum_probs=161.5
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..+++|+.|...++.|..+| .+||+.+--+.... ......+-.+..+-| ..++|+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~---------------r~~~~~G~~~veMLf---------R~N~la 62 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS---------------RQFIDGGFKIVEMLF---------RSNYLA 62 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhh---------------hccccCchhhhhHhh---------hhceEE
Confidence 44599999999999988887 79999874211100 000111112222222 112333
Q ss_pred -EEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 143 -STTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 143 -~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+|+.+ ..+.|||=...+++.++.... +|.++.+.++ .|++-..+.|.||.....-+....+.+.
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~~------~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~- 133 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFNS------EIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR- 133 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEecc------ceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-
Confidence 33333 469999977777777766554 8899999655 6777788999999987533322222111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEE-ecCCCeEEEEEcCCcee--eEEeeccccCeEEEEEccCCCEEEEEecCCCe-EE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY-IL 291 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~v~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~-i~ 291 (430)
..+..+.+++-+. +..+||. |..-|.|.|-|+...+. ...+.+|...|.|++.+-+|..+|+++ ..|+ ||
T Consensus 134 ----~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIR 207 (346)
T KOG2111|consen 134 ----SNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIR 207 (346)
T ss_pred ----cCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEE
Confidence 1111233333322 2334444 44569999999987665 477889999999999999999999999 6665 89
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|||..++.... .+ +.......|.+++|||++.+|+++|+.|+++|+.++..
T Consensus 208 IFdt~~g~~l~-E~-RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 208 IFDTEDGTLLQ-EL-RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCCCcEee-ee-ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999986553 33 22455678999999999999999999999999998753
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=140.03 Aligned_cols=209 Identities=14% Similarity=0.210 Sum_probs=157.8
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~v 152 (430)
..|+.++.||.+.|.+-.. ........|.+.+.+-.| +|+|.-|+++++||.|++
T Consensus 76 d~~~i~s~DGkf~il~k~~------------------rVE~sv~AH~~A~~~gRW-------~~dGtgLlt~GEDG~iKi 130 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA------------------RVERSISAHAAAISSGRW-------SPDGAGLLTAGEDGVIKI 130 (737)
T ss_pred ceEEEEcCCceEEEecccc------------------hhhhhhhhhhhhhhhccc-------CCCCceeeeecCCceEEE
Confidence 4788889999998876432 122233446678999999 779999999999999999
Q ss_pred EeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC
Q 014125 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (430)
|.- +|....++..... +|.|++|.|+...++-+..+.+.|=-+..... ......|.+.|.++.|++
T Consensus 131 WSr-sGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k--------~i~WkAHDGiiL~~~W~~ 196 (737)
T KOG1524|consen 131 WSR-SGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQGGHISIKPLAANSK--------IIRWRAHDGLVLSLSWST 196 (737)
T ss_pred Eec-cchHHHHHhhcCc-----eeEEEEECCCCCceEEecCCeEEEeecccccc--------eeEEeccCcEEEEeecCc
Confidence 985 4443333332222 89999999999888877677777765543221 112368899999999999
Q ss_pred CCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCc
Q 014125 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
..+++++|++|-..++||.. |..+..-..|+.+|++++|+|+ +.++.++ -+++|+= ....
T Consensus 197 -~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S--~nt~R~~---------------~p~~ 256 (737)
T KOG1524|consen 197 -QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS--YNTARFS---------------SPRV 256 (737)
T ss_pred -cccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee--eeeeeec---------------CCCc
Confidence 77899999999999999975 6777777789999999999999 5555554 4455521 2345
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
+.|..++||+||..+++|+..|.+.+-.
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEEee
Confidence 6788999999999999999999876543
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=5.8e-15 Score=129.76 Aligned_cols=291 Identities=14% Similarity=0.137 Sum_probs=178.9
Q ss_pred ceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee-eeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 73 SSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 73 ~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
+++ ++-..++.|.|.|..+.+....+. .+..+ ..+.+ +|||+++++++.||.|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~------------------~~~~~h~~~~~-------s~Dgr~~yv~~rdg~v 60 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIP------------------TGGAPHAGLKF-------SPDGRYLYVANRDGTV 60 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-------------------STTEEEEEE--------TT-SSEEEEEETTSEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEc------------------CCCCceeEEEe-------cCCCCEEEEEcCCCeE
Confidence 344 456678999999998764432221 11222 22344 8899999999999999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
.++|+.+++.+.+++... ...++++++||++++++ ..+.+.++|.++... ...+.............+..+
T Consensus 61 sviD~~~~~~v~~i~~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 61 SVIDLATGKVVATIKVGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp EEEETTSSSEEEEEE-SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEE
T ss_pred EEEECCcccEEEEEecCC------CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeE
Confidence 999999999999887755 56789999999999955 689999999876321 111111111111244567888
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
..+|....+++.--+.+.|.+.|....+.+. .............|+|++++++++...++.|.++|..+.+.....-..
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 8888444455556667999999977654332 222234567789999999998887767889999998775432211000
Q ss_pred cc--------------------C-----------------C-------------ccceEEEEEcCCCCEEEEE----ccC
Q 014125 308 SS--------------------E-----------------H-------------TNQRILFDIEPSGRHLGTG----GQD 333 (430)
Q Consensus 308 ~~--------------------~-----------------~-------------~~~v~~~~~~~~~~~l~~~----~~d 333 (430)
.. . + .+.-.-+..+|+++++.+. ...
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA 293 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence 00 0 0 0111346678999999888 445
Q ss_pred CcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccC
Q 014125 334 GLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
+.|.++|..+.+.+..+....+ .+..+.|+++|+.+..+..+ .++.|.++|-.+-+.+..+.
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~---------------~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWD---------------GNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----------------TTEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEec---------------CCCEEEEEECCCcEEEEEEE
Confidence 7899999999988877764333 59999999999977766543 23367777777666555444
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.6e-16 Score=144.34 Aligned_cols=244 Identities=17% Similarity=0.198 Sum_probs=166.1
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEE-EEEcCCeEEEEEcCCCC-Cccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKI-FAGYNKSVRVFDVHRPG-RDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l-~~~~d~~i~v~d~~~~~-~~~~ 209 (430)
++|-...++++...-.|+|||.+.++....|..... ....|+.+.+-.+. .++ +++.||.|+||+-.... ...+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~--~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF--PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceeccccCCCC--CCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 355566889988778899999999988777765542 22367788775432 333 46699999999865543 2222
Q ss_pred cc---ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEcc-CCCEEEEEe
Q 014125 210 KY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSR-DGNYLYTGG 284 (430)
Q Consensus 210 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~ 284 (430)
.. ..+.....+..+.-.-+.|....+ .|++++.-..|+|||......+..+.. ....|+++.-+- .|+.+++|.
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 11 122222222222234567777455 555555588999999998877766653 334577776543 467888888
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccc--eEEEEEcCCCC-EEEEEccCCcEEEEEcCCCCe--eccccccc--C-C
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQ--RILFDIEPSGR-HLGTGGQDGLVHIYDLQTGKW--ISGFQAAA--D-T 356 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~--~-~ 356 (430)
.||.|++||.+...... .......|... |..+.+.+.|- .|++|+.||.|++||++.... ...+..|. + .
T Consensus 1229 -aDGsvRvyD~R~a~~ds-~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 -ADGSVRVYDRRMAPPDS-LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred -cCCceEEeecccCCccc-cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 99999999998764421 11112345555 99999998774 499999999999999997422 22223333 3 5
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+++..|+....+|+|+. +.++||+.
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEec
Confidence 899999999999999998 88888854
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.1e-16 Score=134.75 Aligned_cols=277 Identities=16% Similarity=0.218 Sum_probs=190.9
Q ss_pred cCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.|...-+.|..+|||+|+ |||.+--.|++||+....+..+-.. ...+. .|-|. +.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl------------------Dae~V--~feiL----sD 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL------------------DAEVV--DFEIL----SD 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc------------------cccce--eEEEe----cc
Confidence 456677899999999975 5677788999999986543222111 11111 11111 33
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
|-..++.-..|.+|.+..-. |. -..++.+ ..-..++++. ...++++|....|+-++++.+ .+.
T Consensus 105 D~SK~v~L~~DR~IefHak~-G~-hy~~RIP------~~GRDm~y~~~scDly~~gsg~evYRlNLEqG--------rfL 168 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKY-GR-HYRTRIP------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG--------RFL 168 (703)
T ss_pred chhhheEeecCceeeehhhc-Ce-eeeeecC------cCCccccccCCCccEEEeecCcceEEEEcccc--------ccc
Confidence 33344555566666554321 11 1111111 1334566654 345666778888999999873 233
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------cccc-----CeEEEEEccCCCEEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------GQEG-----GVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~ 284 (430)
..+....+.+.++..++ ...+|++|+.+|.|..||.++...+..+. .|.+ .|+++.|+.+|-.+++|.
T Consensus 169 ~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred cccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence 33344457799999999 66699999999999999999876655543 2333 499999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--CCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
.+|.+.|||++...+....- +....+|..+.|.+. +..|++. ....++|||-.+|+....+.. ...+..+++
T Consensus 248 -s~G~v~iyDLRa~~pl~~kd---h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~ 321 (703)
T KOG2321|consen 248 -STGSVLIYDLRASKPLLVKD---HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCF 321 (703)
T ss_pred -cCCcEEEEEcccCCceeecc---cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceee
Confidence 99999999999986654332 566778999999776 3445544 346799999999999888774 446999999
Q ss_pred cCCCcEEEEeeCCceeeec
Q 014125 363 HPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw 381 (430)
-|++.+++++-.+..+..+
T Consensus 322 ~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 322 VPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ecCCceEEEecCCCcceeE
Confidence 9999999999877666554
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=6.9e-18 Score=141.89 Aligned_cols=264 Identities=17% Similarity=0.249 Sum_probs=193.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.-+.+.++.+|+.|+.|+.-|.|--+|+.++++..++.. .+.|.++.|.. +..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------~Etv~Dv~~LH-------neq~~ 185 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------METVRDVTFLH-------NEQFF 185 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------hhhhhhhhhhc-------chHHH
Confidence 346789999999999999999999999998866544333 35888888843 34455
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
|++ ....++|||- .|..+..++.+. .|..+.|-|-.-+|++ +..|.++.-|+..+. +...+..
T Consensus 186 AVA-QK~y~yvYD~-~GtElHClk~~~------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk--------lVa~~~t 249 (545)
T KOG1272|consen 186 AVA-QKKYVYVYDN-NGTELHCLKRHI------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK--------LVASIRT 249 (545)
T ss_pred Hhh-hhceEEEecC-CCcEEeehhhcC------chhhhcccchhheeeecccCCceEEEeechhh--------hhHHHHc
Confidence 555 4566999995 455555555544 7888999999888884 478999999998743 2222334
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
..+.+..++-+| -...+-+|...|+|.+|.....+++..+..|.++|.+|++.++|.|++++| .|..++|||++...+
T Consensus 250 ~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 250 GAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQ 327 (545)
T ss_pred cCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeeccccc
Confidence 456788889999 666899999999999999999999999999999999999999999999999 999999999998764
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC-CC----CeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ-TG----KWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
+. .... ..+...+++|..| +++.+....|.||.=. .+ +..+.-....++|.++.|.|-...|-.|-.-
T Consensus 328 l~-t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 328 LH-TYRT----PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred cc-eeec----CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence 43 2211 3345567787655 3344455579999522 21 1111111223489999999977766665443
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=6e-16 Score=144.97 Aligned_cols=222 Identities=16% Similarity=0.179 Sum_probs=149.2
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-------eeeeeecccccccccceEEEEECCCCcE
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTGTK 187 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (430)
...|...|..++-+ ++.+.+|++|+.||+|++|++..-. ...++.. ....+.++...+.+..
T Consensus 1044 L~Ehs~~v~k~a~s------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-----~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVS------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-----EGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred hhhccccccceeec------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-----cCCceEEEEeccCCCe
Confidence 34455666666653 4566899999999999999986421 1222222 2237888888899999
Q ss_pred EEE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCc-ceEEEEEcCCCCc-eEEEecCCCeEEEEEcCCceeeEEee--
Q 014125 188 IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG-IMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELLYVLH-- 262 (430)
Q Consensus 188 l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~-- 262 (430)
+++ +.||.|++.+++....................+ .+..-+|...... .++.+..-+.|..||.+.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 985 599999999998732222111111111122223 3344455554444 78888999999999999876555443
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---CEEEEEc--cCCcEE
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---RHLGTGG--QDGLVH 337 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~ 337 (430)
...+.|++++.+|.+.+++.|. ..|.+.+||+|-....... ..++..++..+..+|-. ...++++ ..+.|.
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGt-s~G~l~lWDLRF~~~i~sw---~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGT-SRGQLVLWDLRFRVPILSW---EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred ccccceeEEEecCCceEEEEec-CCceEEEEEeecCceeecc---cCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2347899999999999999999 9999999999976443221 14455777777777643 3444444 467899
Q ss_pred EEEcCCCCeecccc
Q 014125 338 IYDLQTGKWISGFQ 351 (430)
Q Consensus 338 vwd~~~~~~~~~~~ 351 (430)
+|++.+|..-..+-
T Consensus 1269 ~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLW 1282 (1431)
T ss_pred eeecccCcceEEEE
Confidence 99999886555443
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2.6e-16 Score=143.04 Aligned_cols=204 Identities=18% Similarity=0.137 Sum_probs=134.4
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC---CeEEEEEcCCCCCcccccccccCCCCCCC
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN---KSVRVFDVHRPGRDFEKYSTLKGNKEGQA 222 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 222 (430)
+..|.+||..... ...+..+.. .+.+..|+|+|+.|+ ++.+ ..|++||+.++... . + ....++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~---l-~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--V---V-ASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-----ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--E---E-ecCCCc-
Confidence 4689999986554 333433332 688999999999988 4432 47999999764221 1 1 111222
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEE--EcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~v~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
...++|+|++..++++.+.+|.+.|| |+.+++. ..+..+...+....|+|||+.|+.++..++...+|++.....
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34689999655444555567765554 6655554 445556677889999999998887664678888887754322
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
....+ .+.. ....|+|+|++|+.++.++ +.+||+.+++.......+ ....+.|+|+|++|+.++.+
T Consensus 327 ~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 327 GASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CeEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 22222 1222 3578999999998887765 666999988754322222 33567899999999998854
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.2e-17 Score=137.04 Aligned_cols=279 Identities=16% Similarity=0.207 Sum_probs=201.1
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC---CCcEEEEEc
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFAGY 192 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~ 192 (430)
-.|.+.|..+.| +..|..|++|+.|..|.+||+..++....+... |...|....|-| +...+.++.
T Consensus 139 ~~H~GcVntV~F-------N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG----H~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 139 NKHKGCVNTVHF-------NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG----HCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred cCCCCccceeee-------cccCceeeccCccceEEeehhhccCcccccccc----cccchhhhhccCCCCCcCceeccc
Confidence 346678888888 678999999999999999999998877665542 222444445555 334444779
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---ecccc---
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEG--- 266 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~--- 266 (430)
||.+++=.+...+.. .-......|.++|..++..|+...-|.+++.|+.+.-+|++...+...+ ..+..
T Consensus 208 dgqvr~s~i~~t~~~-----e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 208 DGQVRVSEILETGYV-----ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred cCceeeeeeccccce-----ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 999999887653321 1123346788999999999999999999999999999999987543333 22333
Q ss_pred CeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceE-----EEEee---cccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 267 GVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV-----VYKLY---RSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 267 ~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~-----~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
....++..|... .+++++ .|..+++||.+..... +..+. ........|++++|+.++.-|+++-.|-.|+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGG-SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeEecCCCCccccccCC-hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 577899999776 677777 9999999998754221 11110 0013456789999997776666666777899
Q ss_pred EEEcCC--C----------Ceec-ccccccC--CeeEEEE-cCCCcEEEEeeCCceeeecCCCc----------------
Q 014125 338 IYDLQT--G----------KWIS-GFQAAAD--TVNGFSF-HPFLPMAASSSGHRRFPVDDFED---------------- 385 (430)
Q Consensus 338 vwd~~~--~----------~~~~-~~~~~~~--~v~~~~~-~~~~~~l~s~~~d~~~~vw~~~~---------------- 385 (430)
++.-.. | ..+. .+++|.. .|.++-| -|...++++|+.-|.|.||+...
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC 441 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC 441 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence 995432 2 1222 3778866 5777765 68899999999999999996543
Q ss_pred ---------cccccCCCcEEEEeecccccccccCC
Q 014125 386 ---------LHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 386 ---------l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
|+++|-|..|+||.....+....+.+
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~ 476 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTL 476 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCccccccChhh
Confidence 89999999999998866665555444
No 216
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.1e-14 Score=125.76 Aligned_cols=289 Identities=19% Similarity=0.280 Sum_probs=182.3
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+++..++|++|+++|.+.. ..++|++...... .+.... ..++++.| +|.+.+|
T Consensus 36 ~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~------------------~lt~~~-~~~~~L~f-------SP~g~yL 88 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKV------------------VLCVEL-KKTYDLLF-------SPKGNYL 88 (566)
T ss_pred cceeEEEcCCCcEEEEEcC-CeEEEEEccCCcE------------------EEEecc-ceeeeeee-------ccccccc
Confidence 3778899999999887665 5899998876521 111112 26778888 5556665
Q ss_pred EEE-------eC---CCcEEEEeccCCceeeeeecccc-----------------------------------cccccce
Q 014125 142 AST-------TR---DHPIHLWDATTGLLRCTYRAYDA-----------------------------------VDEITAA 176 (430)
Q Consensus 142 ~~~-------~~---dg~i~vwd~~~~~~~~~~~~~~~-----------------------------------~~~~~~v 176 (430)
.+= .. .-.+.+|+++++.....++.... .-+...|
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i 168 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGI 168 (566)
T ss_pred ccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccce
Confidence 542 11 23477999887544333322111 0012234
Q ss_pred EEEEECCCC--cEEEE------EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--C--
Q 014125 177 FSVAFNPTG--TKIFA------GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--S-- 244 (430)
Q Consensus 177 ~~~~~~~~~--~~l~~------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d-- 244 (430)
..+.++|.+ ..+++ |.-..|+||.....+.. .......-....-..+.|++-+..+|+..+. |
T Consensus 169 ~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~-----~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 169 TMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH-----QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc-----chhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 455555542 22221 12245666655421110 0000000111123456777766666655543 2
Q ss_pred -------CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE-ecCCCeEEEEeCCCCceEEEEeecccCCccceE
Q 014125 245 -------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG-GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI 316 (430)
Q Consensus 245 -------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 316 (430)
.+++++++........+. ..++|.++.|+|+++.++++ |.+--.+.|||++.. ++. .-..++-+
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~v~-----df~egpRN 315 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--PVF-----DFPEGPRN 315 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--EeE-----eCCCCCcc
Confidence 357777777444444444 57899999999999765543 337789999999875 221 22456677
Q ss_pred EEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCC
Q 014125 317 LFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDEN 393 (430)
Q Consensus 317 ~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~ 393 (430)
++-|+|.|++|+.++-+ |.|-|||+.+.+.+..+.... -+-+.|+|||.+++|++..-+++| |+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv-----------dN 382 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV-----------DN 382 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEe-----------cC
Confidence 89999999999888765 789999999999888887544 355799999999999999888887 88
Q ss_pred cEEEEeeccc
Q 014125 394 CVSVWSFLYA 403 (430)
Q Consensus 394 ~i~~w~~~~~ 403 (430)
.++||++...
T Consensus 383 g~KiwhytG~ 392 (566)
T KOG2315|consen 383 GIKIWHYTGS 392 (566)
T ss_pred CeEEEEecCc
Confidence 8999998743
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.4e-15 Score=125.57 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=191.4
Q ss_pred CCCceeEEEECcCCc--eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 59 PNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 59 h~~~v~~~~~sp~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
-...|+.++|.-+++ .|...+.|..+....+........... .........+|..+..
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~-----------~~~~~l~~~~I~gl~~--------- 113 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD-----------AKTVSLGTKSIKGLKL--------- 113 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccc-----------ccccccccccccchhh---------
Confidence 345578888876554 555555677777777766544322210 0111222345665554
Q ss_pred CCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCCcEEEE--EcC--CeEEEEEcCCCCCcc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYN--KSVRVFDVHRPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~d--~~i~v~d~~~~~~~~ 208 (430)
....|++|-.+|.+.+|..+.+. ....+..+. .+..+.-++....|++ |.. ..+.+||+....+.+
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~------g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP------GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCC------ceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 24478889999999999988543 222223222 5666777777766663 455 789999998753333
Q ss_pred cccccccCCC-CCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 209 EKYSTLKGNK-EGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 209 ~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.........+ -.-+-+++++.|-+ + .+.|++++.-+.|++||.+.+ +++..+.-.+.+++++...|++++++++.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec
Confidence 2211111111 11234678889988 5 779999999999999999876 57778887788999999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.-+.+..||++.+......+ .+..+.+.++..+|.+++|++++-|..|+|+|+.+.+++.... -...++.|.+.+
T Consensus 267 -~~g~l~~FD~r~~kl~g~~~---kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 267 -TKGQLAKFDLRGGKLLGCGL---KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred -ccchhheecccCceeecccc---CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99999999999885443222 5778899999999999999999999999999999977765443 234566777755
Q ss_pred C
Q 014125 365 F 365 (430)
Q Consensus 365 ~ 365 (430)
+
T Consensus 342 ~ 342 (412)
T KOG3881|consen 342 D 342 (412)
T ss_pred C
Confidence 4
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=8.9e-16 Score=122.58 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=113.0
Q ss_pred EEEEEcCCCCceEEEecC---------CCeEEEEEcCCc-eeeEEeec-cccCeEEEEEccCCCEEEEEe-cCCCeEEEE
Q 014125 226 SAIAFSPTHTGMLAIGSY---------SQTSAIYREDNM-ELLYVLHG-QEGGVTHVQFSRDGNYLYTGG-RKDPYILCW 293 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i~ 293 (430)
..+.|+|.+..+++.... -+...+|.++.. .....+.- ..++|.+++|+|+|+.+++.. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467888866666555542 134555555332 23333332 345799999999999876553 257899999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
|++. .....+ ....+..+.|+|+|++|++|+.+ |.|.+||+++.+.+.... | ..++.++|+|+|++|+
T Consensus 89 d~~~--~~i~~~-----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVKG--KKIFSF-----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLA 159 (194)
T ss_pred cCcc--cEeEee-----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEE
Confidence 9973 222222 34567789999999999998754 669999999888887765 3 3478999999999999
Q ss_pred EeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 371 SSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 371 s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
+++...+.++ |+.++||++....
T Consensus 160 ta~t~~r~~~-----------dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 160 TATTSPRLRV-----------DNGFKIWSFQGRL 182 (194)
T ss_pred EEEeccceec-----------cccEEEEEecCeE
Confidence 9987655543 8899999996443
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5e-16 Score=121.48 Aligned_cols=272 Identities=13% Similarity=0.188 Sum_probs=172.0
Q ss_pred ccccCCCCCcceeeecceeecc-cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCccccee
Q 014125 36 LIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (430)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (430)
...|.+...+... .+. .|+..|+.+.--|+ ..|.+-+.|+.+.+|++.....
T Consensus 37 V~~w~lqt~r~~~------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~-------------------- 89 (323)
T KOG0322|consen 37 VKMWVLQTERDLP------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF-------------------- 89 (323)
T ss_pred EEEEEeecCccch------hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce--------------------
Confidence 3445555555544 344 56788999999987 5788999999999999975321
Q ss_pred eecCCCeeeeeeeccccCccCCCC--ceEEEEeCCCc-EEEEeccCCceeeeeecccccccccceEEEEECC-CC-cEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTS--CVFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TG-TKI- 188 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~--~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~l- 188 (430)
...|.-.+.++.|++....-.+.. ..++.-++... +.+-|......++... .......+.+.+..+.. .+ .++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d-d~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD-DSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC-chhccccCceeeeeccccccceEEE
Confidence 112223555566655432211111 12222221111 2222222211121111 11222334566665432 23 333
Q ss_pred EEE-cCCeEEEEEcCCCCCccc--ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--e--eeEEe
Q 014125 189 FAG-YNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--E--LLYVL 261 (430)
Q Consensus 189 ~~~-~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~--~~~~~ 261 (430)
++| .+|.+.+||+..+..... ...........|..++.++.|.+ ....=++|+.+..+..|++... . ....+
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceE
Confidence 367 899999999988533221 12233344567889999999988 4445577888888889987643 1 11222
Q ss_pred eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 262 ~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
......|..+..-||++.++++| .|+.||+|..++..... ....|...|.+++|+|+...+|+++.|++|.+|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pLA----VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPLA----VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCchh----hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22345688999999999999999 99999999999885432 22578899999999999999999999999999986
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.7e-15 Score=125.00 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=183.2
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecc-cccccccceEEEEECCCCcEEEEEcCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIFAGYNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 196 (430)
....+..++|.- .+....|...+.+..+..+.............. .......+|..++.. ++.+++|-.+|.+
T Consensus 54 ~~~ris~l~~~~-----d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l 127 (412)
T KOG3881|consen 54 ELDRISSLLFGV-----DGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNL 127 (412)
T ss_pred hhhhhhhheeec-----CCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEecCCcE
Confidence 335677788842 445566766667777887777766554443111 001112255555543 6666667799999
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--CeEEEEEcCCceeeEEeecc---------c
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYVLHGQ---------E 265 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~~~d~~~~~~~~~~~~~---------~ 265 (430)
.+|....+.........+ .....+..+.-++....++++|+.. ..+.+||+...+.+..-+.- .
T Consensus 128 ~~~~~k~~d~hss~l~~l-----a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKL-----ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred EEEeccCCccccccceee-----ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 999987543211111111 1113466677777677888999998 88999999988665543321 1
Q ss_pred cCeEEEEEccC--CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 266 GGVTHVQFSRD--GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 266 ~~i~~~~~~~~--~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
-.++++.|-+. ...|+++. .-+.+++||.+...+++..+ .....+++++...|+|++|++|..-|.+..||++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T-~~hqvR~YDt~~qRRPV~~f---d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATIT-RYHQVRLYDTRHQRRPVAQF---DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred eeeccceecCCCCCceEEEEe-cceeEEEecCcccCcceeEe---ccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 24678899887 77899998 89999999999887776555 44578899999999999999999999999999999
Q ss_pred CCeecc-cccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 344 GKWISG-FQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 344 ~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
++.+.. +++-.+.|++|..+|.+++|++++-|+.++|+|...
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 998877 888999999999999999999999777777776544
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.2e-15 Score=133.70 Aligned_cols=219 Identities=13% Similarity=0.136 Sum_probs=144.3
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G- 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~- 191 (430)
.+...+...+| +|||+.|+..+. +..|.+|++.+++......... .+....|+|||+.|+. .
T Consensus 196 ~~~~~~~~p~w-------SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~------~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 196 RSPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------HNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred cCCCceeeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC------CcCCeEECCCCCEEEEEEc
Confidence 34457888899 789998886542 4579999998876543322211 3346899999998883 2
Q ss_pred cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccC
Q 014125 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++ .|++||+..+.. ..+ ..+...+....|+|++..++++...++. |+++|+.+++.. .+..+...
T Consensus 263 ~~g~~~I~~~d~~tg~~-----~~l----t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~ 332 (429)
T PRK03629 263 KTGSLNLYVMDLASGQI-----RQV----TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ 332 (429)
T ss_pred CCCCcEEEEEECCCCCE-----EEc----cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 344 588889875321 111 1223356788999965544455444454 555566665443 33334445
Q ss_pred eEEEEEccCCCEEEEEecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc---EEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL---VHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vwd~~ 342 (430)
.....|+|+|++|+..+..+ ..|.+||+.++... .+.. . .......|+|||++|+.++.++. +++++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 66789999999998876333 35888999876432 2211 1 12345789999999999888764 6777774
Q ss_pred CCCeecccccccCCeeEEEEcCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
++....+.+|.+.+...+|+|-
T Consensus 407 -G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 407 -GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCCeEECccCCCCcCCcccCCC
Confidence 6666777788888999999983
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5e-15 Score=134.48 Aligned_cols=220 Identities=19% Similarity=0.244 Sum_probs=141.0
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-E-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-G 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~ 191 (430)
.+...+.+.+| +|||+.|+..+.+ ..|.+||+.+++....... .. ...+..|+|||+.|+ + +
T Consensus 193 ~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g-----~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 193 SSPEPIISPAW-------SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG-----SNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred cCCCCcccceE-------cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC-----CccceEECCCCCEEEEEEc
Confidence 34567888888 7799988877643 3599999998875433222 11 445789999999887 3 3
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCceeeEEeeccccCeE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVT 269 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~~~~~~~~~~~i~ 269 (430)
.++...+|.++..+.... .+ ..+........|+|++..+++++..+|...+|.+ .+++.. .+........
T Consensus 260 ~~g~~~Iy~~d~~~~~~~---~l----t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~ 331 (427)
T PRK02889 260 RDGNSQIYTVNADGSGLR---RL----TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT 331 (427)
T ss_pred cCCCceEEEEECCCCCcE---EC----CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC
Confidence 677767776543222111 11 2223345667899966655555555566666654 444332 2222233445
Q ss_pred EEEEccCCCEEEEEecCCC---eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCC
Q 014125 270 HVQFSRDGNYLYTGGRKDP---YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQT 343 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~ 343 (430)
..+|+|+|++|+..+ .++ .|.+||+.++... .+.. ........|+|+|+.|+.++.++ .+++.++ +
T Consensus 332 ~~~~SpDG~~Ia~~s-~~~g~~~I~v~d~~~g~~~--~lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 332 SPRISPDGKLLAYIS-RVGGAFKLYVQDLATGQVT--ALTD----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred ceEECCCCCEEEEEE-ccCCcEEEEEEECCCCCeE--EccC----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 689999999998877 443 6999999876432 2211 12235689999999988777544 3666666 4
Q ss_pred CCeecccccccCCeeEEEEcCC
Q 014125 344 GKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
++....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 6666666667777888899874
No 223
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.6e-16 Score=128.39 Aligned_cols=251 Identities=13% Similarity=0.137 Sum_probs=172.5
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCCCcEEEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAG- 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~- 191 (430)
...|.+.|.++.| +.+++.|++|+.|..+++|+++.--..++-+... ...|...|.|++|...++++++|
T Consensus 52 ~~~H~GCiNAlqF-------S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 52 VREHTGCINALQF-------SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhccccceeee-------ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 3457788999999 7789999999999999999986532222111111 11234589999999999999866
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-e--eEEeeccccCe
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-L--LYVLHGQEGGV 268 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~--~~~~~~~~~~i 268 (430)
.+++|..-|+.+..... .. ......+.|..+..+| -.+.|++.+.++.|.+||.+... . ...+.......
T Consensus 125 ~~~~VI~HDiEt~qsi~----V~--~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY----VA--NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred CcceeEeeecccceeee----ee--cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 89999999998742211 11 1123345899999999 57899999999999999998754 2 22222344567
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCc---cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHT---NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
..+.|+|....|+...+..+-+-+||.+.....+.......+-. ..-..+.|+|+|..+.+--...--.+||+-+.+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 88999997765554444788899999997755443322112211 223567899999888776655556677777643
Q ss_pred e-eccccccc-------CCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 346 W-ISGFQAAA-------DTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 346 ~-~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+ +..+. |. ..+.+++|..+.. +++|+.+-.+.+|
T Consensus 278 ~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 278 CFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIW 319 (609)
T ss_pred ceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEE
Confidence 3 33332 22 2467788876555 8899999999999
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.7e-15 Score=120.77 Aligned_cols=236 Identities=17% Similarity=0.262 Sum_probs=159.0
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEEEEcCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAGYNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~v 198 (430)
..+..++|+++. ..++++..|-.|++|+-.. +....++... ...|.+++|-|.+ ..|+.+..+.|.+
T Consensus 99 ~dlr~~aWhqH~-------~~fava~nddvVriy~kss-t~pt~Lks~s----QrnvtclawRPlsaselavgCr~gIci 166 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-------IAFAVATNDDVVRIYDKSS-TCPTKLKSVS----QRNVTCLAWRPLSASELAVGCRAGICI 166 (445)
T ss_pred cceeeEeechhh-------hhhhhhccCcEEEEeccCC-CCCceecchh----hcceeEEEeccCCcceeeeeecceeEE
Confidence 467889997653 3588999999999999776 4444444322 2389999999976 5566787888999
Q ss_pred EEcCCCCCcccccc---c--cc-CCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 199 FDVHRPGRDFEKYS---T--LK-GNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 199 ~d~~~~~~~~~~~~---~--~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
|..+.......... . .. ....+| .+|++|.|++|+. .+++++ .|..|.+||..++..+.......+.++-+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence 98876433222110 0 00 011233 6899999999655 555555 57889999999987765554456789999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC-C-----
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG-K----- 345 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~----- 345 (430)
.|||||.+|+++. -|+..++|......... +..-..+.|...+|+|+|++|+.+.. |.-++|.+.-. +
T Consensus 245 kwSPdgd~lfaAt-~davfrlw~e~q~wt~e----rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 245 KWSPDGDVLFAAT-CDAVFRLWQENQSWTKE----RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred EEcCCCCEEEEec-ccceeeeehhcccceec----ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 9999999999999 89999999655432221 11223448999999999988665443 23344443210 0
Q ss_pred ---------eecccc-----c----ccCCeeEEEEcCCCcEEEEeeCC
Q 014125 346 ---------WISGFQ-----A----AADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 346 ---------~~~~~~-----~----~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
++..++ . -.+.+.+++|.|.|.+||+.-..
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 011111 1 14578899999999999987543
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=5.3e-15 Score=118.96 Aligned_cols=233 Identities=15% Similarity=0.194 Sum_probs=158.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC-----
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN----- 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d----- 193 (430)
....++| +.|...+++|..+| .++|+++.-+.....+.... . ..+..+-| ..++++ +| .+
T Consensus 7 ~~lsvs~-------NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~--G-~~~veMLf--R~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 7 KTLSVSF-------NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG--G-FKIVEMLF--RSNYLALVGGGSRPKYP 73 (346)
T ss_pred ceeEEEE-------ccCCceEEEEecCc-eEEEecCchhhhhhhccccC--c-hhhhhHhh--hhceEEEecCCCCCCCC
Confidence 3444778 77888899999888 99999876332222221111 0 12223333 223444 33 22
Q ss_pred -CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccc--cCeE
Q 014125 194 -KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQE--GGVT 269 (430)
Q Consensus 194 -~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~--~~i~ 269 (430)
+.|.|||=.. .. ...++ .-..+|.++.+.++ .+++.- .+.|++|... +.+.++.+.... ..+.
T Consensus 74 pNkviIWDD~k-~~---~i~el-----~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 74 PNKVIIWDDLK-ER---CIIEL-----SFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred CceEEEEeccc-Cc---EEEEE-----EeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence 5799999322 11 11111 22456999999873 444443 6889999987 445555555332 3344
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCc-EEEEEcCCCCee
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHIYDLQTGKWI 347 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~ 347 (430)
+++-..+...|+.-|..-|.|.|-|+...... ... ...|.+.|.+++++-+|..+|++|..|+ |||||..+|+.+
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~---I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI---INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE---EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 44433345566666657799999999876441 112 2689999999999999999999999998 999999999999
Q ss_pred cccccccC--CeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 348 SGFQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 348 ~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
++++.... .|.+++|+|+..+||.+|..|+++|+.
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 99875433 699999999999999999999999883
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=7.6e-13 Score=116.81 Aligned_cols=249 Identities=18% Similarity=0.233 Sum_probs=160.4
Q ss_pred cCCCCceEEEEeC----CCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCC
Q 014125 134 SDPTSCVFASTTR----DHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPG 205 (430)
Q Consensus 134 ~~~~~~~l~~~~~----dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~ 205 (430)
++|++++|++... +|.|..|++... +....-.... .......++++|++++|+++ .+|.|.++++...+
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE---SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc---CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 3788999998877 468999988764 3222111110 11155689999999999965 68999999998754
Q ss_pred Cccccccccc------CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--ee--EEee-ccccCeEEEEEc
Q 014125 206 RDFEKYSTLK------GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LL--YVLH-GQEGGVTHVQFS 274 (430)
Q Consensus 206 ~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~--~~~~-~~~~~i~~~~~~ 274 (430)
.......... ...........++.++|++..++++.-....|.+|++.... .. ..+. ........++|+
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence 3322211110 00112234578999999666566666667789999987654 21 2222 234567899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEee---cc---cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcC--CCC
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY---RS---SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQ--TGK 345 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~---~~---~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~ 345 (430)
|+++++++....++.|.++++........... .. .........+.++|+|++|+++.. .+.|.+|+++ +++
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 99999999987899999999982221111111 11 111235788999999999887664 5679999994 344
Q ss_pred e--ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeec
Q 014125 346 W--ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 346 ~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
+ +..+.......+.++++|+|++|+++.. .++.|.+|++.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~----------------~s~~v~vf~~d 322 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ----------------DSNTVSVFDID 322 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEET----------------TTTEEEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEec----------------CCCeEEEEEEe
Confidence 3 3333433445899999999999998875 46778888775
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.4e-14 Score=132.15 Aligned_cols=218 Identities=15% Similarity=0.164 Sum_probs=141.2
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-E-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-G 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~ 191 (430)
.+...+...+| +|||+.|+..+.+ ..|.+||+.+++...... ... ...+..|+|+|+.|+ + +
T Consensus 201 ~~~~~v~~p~w-------SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g-----~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 201 RSAEPILSPAW-------SPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG-----INGAPSFSPDGRRLALTLS 267 (433)
T ss_pred cCCCccccccC-------CCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC-----CccCceECCCCCEEEEEEe
Confidence 34457888888 7899998887643 469999998876543322 111 334789999999876 3 3
Q ss_pred cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccC
Q 014125 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++ .|++||+..+.. ..+ ..+.......+|+|++..++++...+|. |+++|+.+++... +..+...
T Consensus 268 ~~g~~~Iy~~d~~~g~~-----~~l----t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~ 337 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQL-----TRL----TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY 337 (433)
T ss_pred CCCCceEEEEECCCCCe-----EEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence 444 689999876321 111 2223345678999965545555545555 6667776665432 2223344
Q ss_pred eEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~ 342 (430)
...++|+|+|++|+..+..++ .|.+||+.++... .+. +........|+|+|++|+..+.+ +.|+++++.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 557899999999988762333 6999999876432 221 11223457899999988776653 358888885
Q ss_pred CCCeecccccccCCeeEEEEcC
Q 014125 343 TGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 445566665667788888887
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.69 E-value=3.8e-13 Score=118.72 Aligned_cols=277 Identities=19% Similarity=0.256 Sum_probs=170.9
Q ss_pred ceeEEEECcCCceEEEecC----CCeEEEEeCCCC-CCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 62 FLKGIKWSPDGSSFLTSSE----DKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~----dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
....++++|++++|.++.. +|.|..|++... ..+. ........+.....++. +|
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~--------------~~~~~~~~g~~p~~i~~-------~~ 96 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT--------------LLNSVPSGGSSPCHIAV-------DP 96 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE--------------EEEEEEESSSCEEEEEE-------CT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE--------------EeeeeccCCCCcEEEEE-------ec
Confidence 3566889999999988866 578988887653 1100 00011112233334555 78
Q ss_pred CCceEEEEeC-CCcEEEEeccC-Cceeeeeecc-------c-ccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCC
Q 014125 137 TSCVFASTTR-DHPIHLWDATT-GLLRCTYRAY-------D-AVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~-------~-~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~ 204 (430)
++++|+++.. +|.|.++++.. +......... . .......+.++.++|+++++++. ....|.+|+++..
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 8999888874 88999999987 4333321111 0 01122356789999999988854 5678999999875
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cce--eeEEeecc------ccCeEEEEEc
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NME--LLYVLHGQ------EGGVTHVQFS 274 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~--~~~~~~~~------~~~i~~~~~~ 274 (430)
...+.....+ ........+.+.|+|++..++++...+++|.+|++. ++. .+..+... ......|+++
T Consensus 177 ~~~l~~~~~~---~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 177 TGKLTPVDSI---KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp S-TEEEEEEE---ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred CceEEEeecc---ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 4333221111 123345588999999777777778889999999988 442 22222211 1257889999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEc--CCCCeecccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDL--QTGKWISGFQ 351 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~ 351 (430)
|+|++|+++.+..+.|.+|++......+...............++++|+|++|+++.. ++.|.+|++ .+|.+...-.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 9999999999888999999994321111222222223445789999999999988874 568999976 4665543332
Q ss_pred -cccCCeeEEEE
Q 014125 352 -AAADTVNGFSF 362 (430)
Q Consensus 352 -~~~~~v~~~~~ 362 (430)
..-....||.|
T Consensus 334 ~~~~~~p~ci~f 345 (345)
T PF10282_consen 334 SVPIPSPVCIVF 345 (345)
T ss_dssp EEESSSEEEEEE
T ss_pred cccCCCCEEEeC
Confidence 22234555554
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=5.2e-15 Score=119.53 Aligned_cols=187 Identities=17% Similarity=0.276 Sum_probs=135.3
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~ 211 (430)
|||+|+++|+++.- .+.|-|..+-+..+.+.... .|.-+.|..|..+++++ .++.|.+|++..++
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cld------ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe------ 82 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLD------KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE------ 82 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHH------HhhheeeeccceeeeeeeeccceEEEEEeecce------
Confidence 48999999999877 68888887766555544432 67788999999888855 78899999998742
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC---
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--- 288 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--- 288 (430)
...........+.++.|+|++..+|.+...+-.|.+|.+.+.+.... +.....+..++|+|+|++.+..++.|.
T Consensus 83 --w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 83 --WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred --eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHH
Confidence 22223455667999999998888999999999999999987765433 323445688999999998887764432
Q ss_pred --------------------------------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 289 --------------------------------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 289 --------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+.+||---.-.. .. -.-.-.+..++|+|.+++|+.|+.|+.+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-~a----Ye~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-YA----YERGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-ee----eeeccceeEEEeccccceEEeeccchhh
Confidence 2333332111000 00 1123567889999999999999999999
Q ss_pred EEEEc
Q 014125 337 HIYDL 341 (430)
Q Consensus 337 ~vwd~ 341 (430)
+|.+-
T Consensus 235 rvlnh 239 (447)
T KOG4497|consen 235 RVLNH 239 (447)
T ss_pred hhhce
Confidence 98764
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.68 E-value=1.4e-14 Score=117.74 Aligned_cols=251 Identities=16% Similarity=0.294 Sum_probs=173.6
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..++.+.||.+.|++...-|...-+++.+.|.+++||--.+.. .+-+........+++++.+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~---------------q~wpsI~~~mP~~~~~~~y-- 76 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG---------------QYWPSIYHYMPSPCSAMEY-- 76 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc---------------ccCchhhhhCCCCceEeee--
Confidence 35677899999999999999988889999999999999543221 1122222223357788887
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCC----ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~ 204 (430)
.++...|+.|-..|++.-+.+... ...+.+.. |...+..+-|+...+.++ +|.|..+. |-....
T Consensus 77 -----~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-----h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~ 145 (404)
T KOG1409|consen 77 -----VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-----HQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTES 145 (404)
T ss_pred -----eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhh-----hhcceeeEEecCCceeEEEeccccceE-EEeecc
Confidence 567889999999999998876542 22333333 344888999988888877 45665553 433222
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
+..+..+. + ....+++.+.- . ....|...|.|.+..+ ..-.++.++.+|.+.+++++|.|....|++
T Consensus 146 ~~~lg~Y~-~-------~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS 214 (404)
T KOG1409|consen 146 GNRLGGYN-F-------ETPASALQFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS 214 (404)
T ss_pred CCcccceE-e-------eccCCCCceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe
Confidence 21111000 0 00111112211 1 4455666666665543 344678889999999999999999999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
+. .|..+.+||+-......... .+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus 215 g~-~d~~vi~wdigg~~g~~~el---~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 215 GA-SDHSVIMWDIGGRKGTAYEL---QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cc-ccCceEEEeccCCcceeeee---ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99 99999999998765544443 57888888888877778899999999999999863
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.2e-14 Score=127.20 Aligned_cols=205 Identities=14% Similarity=0.056 Sum_probs=132.9
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.|.++|........... ... .+.+.+|+|||+.|+ ++ .+..|.+|++..+.. .. +. .....
T Consensus 180 ~l~~~d~dg~~~~~lt~-~~~-----~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~---l~----~~~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-SPQ-----PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQ---VA----SFPRH 244 (429)
T ss_pred eEEEEcCCCCCCEEeec-CCC-----ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EE---cc----CCCCC
Confidence 68888887654433322 222 678999999999888 43 245799999876321 11 11 11122
Q ss_pred eEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCce
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAVQ 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~~ 300 (430)
.....|+|++..++++.+.+| .|++||+.+++..... .+...+....|+|+|+.|+.++..++. |.++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 446899996665555555555 5889999887665443 344567889999999988877734444 44556665432
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
. .+. ..........|+|+|++|+..+.+ ..|++||+.+++.. .+.. ........|+|||++|+.++.++
T Consensus 324 ~--~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 324 Q--RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred E--Eee---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCC
Confidence 2 221 122334568899999998876543 35889999888643 2321 12345678999999999988653
No 232
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=2.7e-16 Score=141.63 Aligned_cols=232 Identities=22% Similarity=0.312 Sum_probs=174.3
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+|...|+|..| ...|.++++|+.|..++||..+++.+.....+|.. .|+.++.+.++.+++ ++.|
T Consensus 186 LlgH~naVyca~f-------Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-----ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIF-------DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG-----DITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHhhhhheeeeee-------ccccceEeecCccceeeeeeccchhhhccCCCCcc-----ccchhccchhhhhhhhcccC
Confidence 3467788999999 77899999999999999999999999999998876 899999998888888 4589
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE---ee-ccccCeE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV---LH-GQEGGVT 269 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~---~~-~~~~~i~ 269 (430)
..|++|.+..+ .+...+.+|++.|++++|+|. .+.+.||++++||.+-.-.... +. ....-+.
T Consensus 254 ~vIrvWrl~~~--------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 254 KVIRVWRLPDG--------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred ceEEEEecCCC--------chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCccccccee
Confidence 99999999873 333445899999999999993 3778899999999881111111 11 1224567
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeec
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
++.|...+..+++++ .|+.-..|.+.... .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|.++.
T Consensus 321 s~~~~~~~~~f~Tgs-~d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGS-RDGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred eeecccccccccccc-CCcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 788888888899998 89988888765321 12222222222222 2466777778889999999999999
Q ss_pred ccccccCCeeEEEEcCCCcEEE-EeeCCceeeecC
Q 014125 349 GFQAAADTVNGFSFHPFLPMAA-SSSGHRRFPVDD 382 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~~~vw~ 382 (430)
.+.+|...+..+.+||-...++ +++.||...|||
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 9999999999999999776544 344444444443
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.3e-13 Score=125.95 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=141.0
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
..+...+...+| +|||+.|+..+. +..|.+||+.+++.... ..... .+....|+|||+.|+ +.
T Consensus 198 t~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~g-----~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 198 TDGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFPG-----MTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred ecCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCCC-----cccCcEECCCCCEEEEEE
Confidence 345568889999 779998887764 46899999988865432 22221 556789999999876 33
Q ss_pred -cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeecccc
Q 014125 192 -YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 192 -~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~ 266 (430)
.++ .|.+||+..+.. ..+ ..+........|+|++..++++...+| .|+++|+.+++.. .+..+.+
T Consensus 265 ~~~g~~~Iy~~d~~~~~~-----~~L----t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~ 334 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTT-----TRL----TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGG 334 (435)
T ss_pred ecCCCceEEEEECCCCce-----EEc----cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCC
Confidence 444 477778765321 111 223344667899996554544443444 6888888766543 3333445
Q ss_pred CeEEEEEccCCCEEEEEecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------CcEEE
Q 014125 267 GVTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------GLVHI 338 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~v 338 (430)
.+....|+|+|+.|+...... ..|.+||+...... .+. ....+....|+|||+.|+..+.+ ..+++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--ecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 677789999999998876222 36888887654322 221 11235678999999988765542 25888
Q ss_pred EEcCCCCeecccccccCCeeEEEEcCC
Q 014125 339 YDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+|+..+.. ..+. ..+.+...+|+|-
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCCC
Confidence 88876554 3444 2445677788873
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=2.3e-14 Score=114.43 Aligned_cols=157 Identities=19% Similarity=0.350 Sum_probs=109.4
Q ss_pred EEEECCCCcEEEE--Ec---------CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEE-ecCCC
Q 014125 178 SVAFNPTGTKIFA--GY---------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQ 245 (430)
Q Consensus 178 ~~~~~~~~~~l~~--~~---------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg 245 (430)
.+.|+|+|.+|++ .. -+...+|.++..+.+.... .....++|.+++|+|++..++++ |..++
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i------~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI------ELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee------eccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 6889999988873 21 1456677665433322111 11233569999999966554433 45678
Q ss_pred eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC
Q 014125 246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS 323 (430)
Q Consensus 246 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 323 (430)
.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. ..|.|.+||.++..... . .....++.++|+|+
T Consensus 84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~-~-----~~~~~~t~~~WsPd 154 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS-T-----FEHSDATDVEWSPD 154 (194)
T ss_pred ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee-c-----cccCcEEEEEEcCC
Confidence 99999997 66666664 467889999999999999872 24679999999664332 2 12234789999999
Q ss_pred CCEEEEEcc------CCcEEEEEcCCCCeeccc
Q 014125 324 GRHLGTGGQ------DGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 324 ~~~l~~~~~------dg~i~vwd~~~~~~~~~~ 350 (430)
|++|++++. |+.++||+.. |+.+...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 999998874 6789999986 6655443
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.5e-13 Score=120.83 Aligned_cols=252 Identities=17% Similarity=0.203 Sum_probs=155.8
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
..+.|+|||+++++++.||.|.++|+.+.+....+ ..+.....+++ ++||+++++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------------------~~G~~~~~i~~-------s~DG~~~~v 94 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI------------------KVGGNPRGIAV-------SPDGKYVYV 94 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE------------------E-SSEEEEEEE---------TTTEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE------------------ecCCCcceEEE-------cCCCCEEEE
Confidence 45789999999999999999999999987543322 23345666777 889999887
Q ss_pred Ee-CCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEE-EEc-CCeEEEEEcCCCCCcccccccccCCC
Q 014125 144 TT-RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIF-AGY-NKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 144 ~~-~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+. ..+.+.++|.++.+.+..+....... ....+.++..+|....++ +-. .+.|.+.|......... ..+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~--~~i---- 168 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV--TTI---- 168 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE--EEE----
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce--eee----
Confidence 75 58899999999999888876543211 223567888888888555 444 48888888765422111 111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------------------------------------
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------------------------------ 262 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------------------------ 262 (430)
..........|+|++..+++....+..|-++|..+++.+..+.
T Consensus 169 -~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 169 -KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp -E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred -cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 1123466789999555555656667788888877665443221
Q ss_pred -------------------ccccCeEEEEEccCCCEEEEE---ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE
Q 014125 263 -------------------GQEGGVTHVQFSRDGNYLYTG---GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 263 -------------------~~~~~i~~~~~~~~~~~l~~~---~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
...++ ..+..+|+++++++. +...+.|.++|.++.+ ....+. ......+..+.|
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~--~~~~~~~~h~ef 323 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTIT--PGPGKRVVHMEF 323 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HH--HHHT--EEEEEE
T ss_pred CCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEe--ccCCCcEeccEE
Confidence 11112 457779999999998 4356899999999873 322321 112234889999
Q ss_pred cCCCCEEEEEccC--CcEEEEEcCCCCeecccc
Q 014125 321 EPSGRHLGTGGQD--GLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 321 ~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 351 (430)
+++|+.+..+..+ +.|.|||..+.+.+..+.
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999987666554 369999999999988776
No 236
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.6e-14 Score=120.90 Aligned_cols=293 Identities=12% Similarity=0.164 Sum_probs=180.2
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
=+-+.|||.|.||+|--.-| |.+|-=. .......+.|. .|.-+.| ||..++|+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~------------------~f~r~~RF~Hp-~Vq~idf-------SP~EkYLV 265 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGE------------------SFDRIQRFYHP-GVQFIDF-------SPNEKYLV 265 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCc------------------cHHHHHhccCC-Cceeeec-------CCccceEE
Confidence 35689999999999988776 7899322 33333444444 4666666 77888999
Q ss_pred EEeC-----------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 143 STTR-----------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 143 ~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+-+. ...++|||+.+|...+.+........ .-.-+.||.|++++|.-....|.||+...-.
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP~frWS~DdKy~Arm~~~sisIyEtpsf~------ 337 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWPIFRWSHDDKYFARMTGNSISIYETPSFM------ 337 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccceEEeccCCceeEEeccceEEEEecCcee------
Confidence 8653 24699999999998888877533211 2234689999999996656889999875410
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEE--------------EEE---------------------
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSA--------------IYR--------------------- 251 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~--------------~~d--------------------- 251 (430)
+.....-....|....|+| .+++||--... ..+. +++
T Consensus 338 --lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 338 --LLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred --eecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEe
Confidence 1000111123466666666 44455432211 0111 111
Q ss_pred -----------------cCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEEeecccCCc
Q 014125 252 -----------------EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 252 -----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
++........-.....|...+|-|.|..+++.+.. ..++.+|.+++......... .-..
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--~~dk 492 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--ELDK 492 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--hhcc
Confidence 11111000000123467788999999987766533 35788888874322111111 1122
Q ss_pred cceEEEEEcCCCCEEEEEc---cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccc
Q 014125 313 NQRILFDIEPSGRHLGTGG---QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLS 389 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~ 389 (430)
...+.+.|+|.|++++.+. ..|.+.++|+.-......-.......+.+.|.|.|+|++|++...+.+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk---------- 562 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK---------- 562 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc----------
Confidence 4567799999999988764 468899999885332222222223568899999999999998655443
Q ss_pred cCCCcEEEEeecccccc
Q 014125 390 GDENCVSVWSFLYASMM 406 (430)
Q Consensus 390 ~~d~~i~~w~~~~~~~~ 406 (430)
.|..-++|++...-+.
T Consensus 563 -~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 563 -VDNGYRIFTFQGRLLK 578 (698)
T ss_pred -cccceEEEEeecHHHH
Confidence 4788999998865443
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=2.9e-14 Score=131.92 Aligned_cols=280 Identities=13% Similarity=0.145 Sum_probs=185.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+++++.++-. +||+.|.. -.|.+||+..+.....+........+ ..+ +.+. -.+.+
T Consensus 8 ~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H--------~~e-~~~~------------l~~~~ 63 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH--------RGE-GKVK------------LLSGK 63 (967)
T ss_pred ccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc--------ccc-ccce------------eccce
Confidence 3445555443 57765554 47999999988665544433321111 000 0111 12335
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++++..-+.+..=+....... .+.. .+....+..+...++ ...++.+.+||........+ ......
T Consensus 64 ~v~~~~~~~v~~~~~~~~~~~-~~s~--------wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~----i~~~er 130 (967)
T KOG0974|consen 64 IVTCAKSDEVYVKEASNQIIE-RFSD--------WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSK----IQSDER 130 (967)
T ss_pred EEEEEeecceeecchhhhhhh-hccc--------cccccchhhhcceEEEEEcCceEEEEecccCceehh----cCCCce
Confidence 666665554544333221111 1110 233334444556666 66889999999865321111 110000
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
..-....-+.+++ ..-++++|+.-+.|.+|+....+....+.+|++.|.++.|+.+|.++++.+ +|.++|+|++.+.+
T Consensus 131 ~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~ 208 (967)
T KOG0974|consen 131 CTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSRE 208 (967)
T ss_pred EEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe-cCcceeeeeccccc
Confidence 1111122233445 666889999999999999875444446889999999999999999999999 99999999999876
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCcee
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
... ....+|+..++.+.|.|+ .++++++|-+.++|+.+ ++.+..+.+|.. .+..++..++...++|++.|+.+
T Consensus 209 ~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 209 VLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccC---cccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence 543 223589999999999998 99999999999999766 555668888876 69999999999999999999999
Q ss_pred eecCCCc
Q 014125 379 PVDDFED 385 (430)
Q Consensus 379 ~vw~~~~ 385 (430)
++|+...
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9997655
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.64 E-value=1.3e-13 Score=109.87 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=180.3
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCc
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGL 159 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 159 (430)
.|.+.+|++.+.+... ...+.......+..+.|.... .+|. .++-+...|.|.++......
T Consensus 45 ~Gkl~Lys~~d~~~~~--------------l~~~q~~dts~~~dm~w~~~~----~~g~~~l~~a~a~G~i~~~r~~~~~ 106 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--------------LDTLQCTDTSTEFDMLWRIRE----TDGDFNLLDAHARGQIQLYRNDEDE 106 (339)
T ss_pred ccceEEEeecccccCc--------------cceeeeecccccceeeeeecc----CCccceeeeccccceEEEEeeccce
Confidence 4678888887665432 112223334567888885531 2333 57777889999999887666
Q ss_pred eeeeeeccccccccc-ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCce
Q 014125 160 LRCTYRAYDAVDEIT-AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 237 (430)
....+.+.....-.. ...++.|++.+..++++ .+|.+.+-+.... . ....+..++|........|+..+.++
T Consensus 107 ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~----le~vq~wk~He~E~Wta~f~~~~pnl 180 (339)
T KOG0280|consen 107 SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--V----LEKVQTWKVHEFEAWTAKFSDKEPNL 180 (339)
T ss_pred eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--e----eeecccccccceeeeeeecccCCCce
Confidence 555555544322111 35678899999888877 7788885544321 0 11112457888889999999888899
Q ss_pred EEEecCCCeEEEEEcC-CceeeEE-eeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccc
Q 014125 238 LAIGSYSQTSAIYRED-NMELLYV-LHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ 314 (430)
Q Consensus 238 l~~~~~dg~v~~~d~~-~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 314 (430)
+.+|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|+ .|..|++||.|+-.+++.. ....+.
T Consensus 181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs-YDe~i~~~DtRnm~kPl~~----~~v~GG 255 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS-YDECIRVLDTRNMGKPLFK----AKVGGG 255 (339)
T ss_pred EEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec-cccceeeeehhcccCcccc----Cccccc
Confidence 9999999999999999 3344433 556889999999886 466888888 9999999999976655433 234588
Q ss_pred eEEEEEcCCC--CEEEEEccCCcEEEEEcCCCC-----eecccccccCCeeEEEEcCCCcEEEEee
Q 014125 315 RILFDIEPSG--RHLGTGGQDGLVHIYDLQTGK-----WISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 315 v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
|+.+.++|.- +.|+++-.+| .+|-+...+. .....+.|.+-+..-.|......|+||+
T Consensus 256 VWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred eEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 9999999963 3455444444 6777766442 2345566777777778866666788876
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1e-13 Score=126.47 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=134.3
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc---CCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.+||...... ..+..+.. .+.+.+|+|+|+.|+ ++. ...|++||+..+... .+ ....+
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-----~l----~~~~g 248 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAE-----PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-----LV----ASFRG 248 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCC-----ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-----Ee----ccCCC
Confidence 3588999865443 33333322 678899999999888 442 346999999764221 11 11123
Q ss_pred ceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~ 299 (430)
...+..|+|++..++++.+.+| .|++||+.+++.. .+..+.......+|+|||+.|+.++..+|. |+++|+.++.
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3457899997666666666655 5999999887654 444455556788999999998877634554 6666776653
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.. .+. .........+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|+|++|+..+.
T Consensus 328 ~~--~lt---~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 328 AE--RLT---FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eE--Eee---cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 22 221 1122344689999999988765433 5999999888765 333 2234567899999998887764
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.7e-14 Score=127.61 Aligned_cols=205 Identities=21% Similarity=0.201 Sum_probs=130.9
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc---CCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.++|... .....+..... .+.+.+|+|||+.|+ ++. ...|.+||+..+... .+ ....+
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-----~l----~~~~g 240 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPE-----PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-----VV----ANFKG 240 (427)
T ss_pred cEEEEECCCC-CCceEeccCCC-----CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----Ee----ecCCC
Confidence 3577777643 33333333222 677899999999888 442 246999999764221 11 11223
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEE--cCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC--CCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYR--EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL--RKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~--~~~~ 299 (430)
......|+|++..++++.+.+|...+|. +..+. ...+..+........|+|||+.|+..+..+|...+|.+ .++.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 4567899996666666777788766664 44443 44555455556778999999988876634566666655 3332
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.. .+.. . .......+|+|+|++|+..+.++ .|++||+.+++...... ........|+|+|+.|+.++.+
T Consensus 320 ~~--~lt~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 320 AQ--RVTF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred eE--EEec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec
Confidence 21 2211 1 12234578999999998776554 59999999887543322 2344678999999998888754
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=125.22 Aligned_cols=222 Identities=18% Similarity=0.241 Sum_probs=153.6
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG- 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~- 191 (430)
..+|.+-|.++.| +.+|.+|++|+.|-.+.|||.-..+.+..+.. +|...|.++.|-|. ++++++|
T Consensus 46 L~GH~GCVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 46 LTGHTGCVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hccccceecceee-------cCCCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCeEEEecc
Confidence 4567889999999 78999999999999999999987777666543 34558999999885 3555554
Q ss_pred cCCeEEEEEcCCCCCccc--ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee----------E
Q 014125 192 YNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL----------Y 259 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~----------~ 259 (430)
.|..|+++|+........ ...........|...|..++..|++++.+.++++||+++-||++..... .
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 899999999985222111 0111222235678889999999988899999999999999999874211 0
Q ss_pred EeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceEE----------------EEeecccCC--------c--
Q 014125 260 VLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQVV----------------YKLYRSSEH--------T-- 312 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~~~--------~-- 312 (430)
.+...--...++..+|... +|++|+ .|...++||.+...+.. ...+. .+| .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLKNSQGNLDRY 272 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-CccccCcccccccc
Confidence 1111123467899999765 566677 99999999954211100 00000 111 1
Q ss_pred -cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 313 -NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 313 -~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
..++.+.|+|+|.-|+..-....|+++|+..++....
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1256688999997666555555799999998765443
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.8e-13 Score=123.75 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=136.5
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.++|...... ..+..+.. .+.+.+|+|||+.|+ ++ .+..|.+||+..+... .+ ....+
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-----~l----~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSS-----LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-----LV----GNFPG 246 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCC-----CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-----Ee----ecCCC
Confidence 3688888855443 33443333 788999999999888 44 2468999999764221 11 22334
Q ss_pred ceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~ 299 (430)
.+....|+|++..++++.+.++. |++||+.+++.. .+..+........|+|||+.|+..+..+| .|+++|+..+.
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 56788999976666667666665 777788877654 45545566778999999998887763333 68888887653
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.. .+. .....+....|+|+|++|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+|+|++|+..+.
T Consensus 326 ~~--~lt---~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 326 PR--RIS---FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred eE--Eee---cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 32 221 123345668899999998876543 3588899865543 3332 2235778899999998877664
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6e-13 Score=118.62 Aligned_cols=318 Identities=14% Similarity=0.157 Sum_probs=213.4
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+......|++|+....|+|+||.||.++|-.+.+......... ......-......-+|...|.-+.| +.+
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTW-------Ne~ 82 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTW-------NEN 82 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEe-------ccc
Confidence 3445688999999999999999999999998876533222222 1111222233345678889999999 556
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+.|-+...+|.|.+|-+-.|.......... ....|.+++|+.+|..|. +-.||.|.+=.++.. + ...+
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR---nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-R------IwgK 152 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNR---NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-R------IWGK 152 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCc---CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-e------ecch
Confidence 7789999999999999998886544332221 223788999999999988 558999988777542 1 1111
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeE----EeeccccCeEEEEEc--------cCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLY----VLHGQEGGVTHVQFS--------RDG 277 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~----~~~~~~~~i~~~~~~--------~~~ 277 (430)
.+.+ .....+.|++ +...++.+-.+|.+.+||.... .+.. .+......|..+.|. |+.
T Consensus 153 eLkg--~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 153 ELKG--QLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred hcch--heccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 1111 1245789999 5567777888999999997532 1111 111122235666664 467
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---------CcEEEEEcCCCCeec
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---------GLVHIYDLQTGKWIS 348 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~ 348 (430)
..|+++- ..|.+.+..-.+...+...- ..-.+....|+++|..|+.++.+ +.|.+|.. -|+.+.
T Consensus 230 P~lavcy-~nGr~QiMR~eND~~Pvv~d-----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~g 302 (1189)
T KOG2041|consen 230 PRLAVCY-ANGRMQIMRSENDPEPVVVD-----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVG 302 (1189)
T ss_pred CEEEEEE-cCceehhhhhcCCCCCeEEe-----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheE
Confidence 7888888 89999887666554443221 23567889999999999998864 34666653 478888
Q ss_pred ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC----------Ccc--cccc---CCCcEEEEeeccccc
Q 014125 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF----------EDL--HLSG---DENCVSVWSFLYASM 405 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~----------~~l--~~~~---~d~~i~~w~~~~~~~ 405 (430)
+++.....|++++|-..|-.++.+- |+.+.+-+. +++ +-.+ ....|.+||...++.
T Consensus 303 tlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek 373 (1189)
T KOG2041|consen 303 TLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEK 373 (1189)
T ss_pred EEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChh
Confidence 8888888999999998877776653 444443221 111 1222 245799999987654
No 244
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=5.8e-14 Score=120.77 Aligned_cols=202 Identities=14% Similarity=0.167 Sum_probs=133.2
Q ss_pred eEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE-----cCCCCceEEEecCCCeEEEE
Q 014125 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF-----SPTHTGMLAIGSYSQTSAIY 250 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~~~dg~v~~~ 250 (430)
+....++-.|..|+-.....+++|+.+....... .+.+....... .+|=+| .| .+--+++|-.-|.|.++
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~---pi~k~~y~gt~-P~cHdfn~~~a~~-~g~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSK---PIDKREYKGTS-PTCHDFNSFTATP-KGLDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhcc---chhhhcccCCC-CceecccccccCC-CCcceEEeeccCceEEe
Confidence 3344555567777766667888898875222111 11111111111 222233 23 45567888889999999
Q ss_pred EcCCceeeEEee----ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc--------------eEEE---------
Q 014125 251 REDNMELLYVLH----GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV--------------QVVY--------- 303 (430)
Q Consensus 251 d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--------------~~~~--------- 303 (430)
|....+..+.+. -....++++.|-|.+..++...-.+|.+++||..... ....
T Consensus 201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 876643322221 1236899999999665444444389999999763210 0000
Q ss_pred -EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 304 -KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 304 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
...........|..++|+|||++||+.+.||.++|||..+.+++..++.--+...+++|+|||++|++|+.|--|.||.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 0001112235788899999999999999999999999999999999988888999999999999999998766666663
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.2e-13 Score=117.26 Aligned_cols=275 Identities=13% Similarity=0.115 Sum_probs=168.1
Q ss_pred CeEEEEeCCCCCCccccccccccc-------ccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEEEE
Q 014125 82 KTLRIFSLPENGISYDVNACSLAK-------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLW 153 (430)
Q Consensus 82 g~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vw 153 (430)
..|+||++..++.+.......... ..........+.+...-+.+.. +|||.++ ++|..--.|++|
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~-------s~DGqY~lAtG~YKP~ikvy 79 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKV-------SPDGQYLLATGTYKPQIKVY 79 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEe-------cCCCcEEEEecccCCceEEE
Confidence 358888887665544432211000 0011112223444445555555 8899875 566677899999
Q ss_pred eccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC
Q 014125 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 154 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (430)
|+..-..... .|...+ .|.-.-.+.|-..++ -..|.+|.+-.... .. .... -+..-..++++.
T Consensus 80 dlanLSLKFE--RhlDae---~V~feiLsDD~SK~v~L~~DR~IefHak~G--~h----y~~R-----IP~~GRDm~y~~ 143 (703)
T KOG2321|consen 80 DLANLSLKFE--RHLDAE---VVDFEILSDDYSKSVFLQNDRTIEFHAKYG--RH----YRTR-----IPKFGRDMKYHK 143 (703)
T ss_pred Ecccceeeee--eccccc---ceeEEEeccchhhheEeecCceeeehhhcC--ee----eeee-----cCcCCccccccC
Confidence 9876543222 221111 333333333332232 34566665543211 00 0000 011235566665
Q ss_pred CCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc--cC
Q 014125 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS--SE 310 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~ 310 (430)
... -|.+++....|+-+++..|..+..+....+.++++..++-..+|++|+ .+|.|..||.+........-... ..
T Consensus 144 ~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt-~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 144 PSC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT-EDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred CCc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc-cCceEEEecchhhhhheeeecccccCC
Confidence 333 345555567899999999999998888789999999999988898888 99999999999764432221111 12
Q ss_pred C-----ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-cccCCeeEEEEcCC--CcEEEEeeCCceeeecC
Q 014125 311 H-----TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-AAADTVNGFSFHPF--LPMAASSSGHRRFPVDD 382 (430)
Q Consensus 311 ~-----~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~~~vw~ 382 (430)
+ ...|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+. ++.+++.. ...++||+
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcc
Confidence 2 2349999999999999999999999999999998876544 22348999999876 34555542 33444443
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.58 E-value=4.3e-11 Score=102.91 Aligned_cols=280 Identities=9% Similarity=0.055 Sum_probs=167.3
Q ss_pred CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC----------CCcEE
Q 014125 82 KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----------DHPIH 151 (430)
Q Consensus 82 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~ 151 (430)
++|.+.|..+.+....+ .+.+.|+.. ++||++.|+++.. +..|.
T Consensus 27 ~~v~ViD~~~~~v~g~i-------------------------~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~ 80 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT-------------------------DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVE 80 (352)
T ss_pred ceEEEEECCCCEEEEEE-------------------------EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEE
Confidence 78999998876443211 122344443 4889988887765 78899
Q ss_pred EEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 152 LWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
+||..+.+.+..+....... .......++++|||++++.. . +..|.+.|+.+..... .+. - .+...
T Consensus 81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~----ei~----v-p~~~~ 151 (352)
T TIGR02658 81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR----MMD----V-PDCYH 151 (352)
T ss_pred EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE----EEe----C-CCCcE
Confidence 99999999998887643311 11234478999999999965 3 7899999998742111 000 0 00011
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCC-cee-eEE---eeccccCe-EEEEEcc-CCCEEEEEecCCCeEEEEeCCCCc
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL-LYV---LHGQEGGV-THVQFSR-DGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~-~~~---~~~~~~~i-~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
-...+. ..++ +-+.||......+.+ ++. ... +.....++ ..-.|.+ +|++++++. . |.|.+.|+....
T Consensus 152 vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e-G~V~~id~~~~~ 226 (352)
T TIGR02658 152 IFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T-GKIFQIDLSSGD 226 (352)
T ss_pred EEEecC-CccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-C-CeEEEEecCCCc
Confidence 111111 1111 112344433332222 111 111 11100000 0014455 888888887 4 999999975542
Q ss_pred eEEEEeec---c-----cCCccceEEEEEcCCCCEEEEEc----------cCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 300 QVVYKLYR---S-----SEHTNQRILFDIEPSGRHLGTGG----------QDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 300 ~~~~~~~~---~-----~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
........ . .-....+.-++++|+++.++... ..+.|.++|..+++.+..+.. ...+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~ia 305 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSIN 305 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEE
Confidence 22111111 0 01223344499999998887743 225799999999999988874 35889999
Q ss_pred EcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceee
Q 014125 362 FHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFN 418 (430)
Q Consensus 362 ~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 418 (430)
++|+++ +|.+... .++.|.+.|....+.+..+...-..++.
T Consensus 306 vS~Dgkp~lyvtn~----------------~s~~VsViD~~t~k~i~~i~~vg~~P~~ 347 (352)
T TIGR02658 306 VSQDAKPLLYALST----------------GDKTLYIFDAETGKELSSVNQLGRGPQV 347 (352)
T ss_pred ECCCCCeEEEEeCC----------------CCCcEEEEECcCCeEEeeeccCCCCCeE
Confidence 999999 7776652 4678999999988888877544333443
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.57 E-value=2.3e-12 Score=110.52 Aligned_cols=291 Identities=13% Similarity=0.186 Sum_probs=184.8
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..-++..++|||.|.+|++....| |.+|.-.... ....+.| ..|+.+.| +|.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~------------------~l~~~~~-~~V~~~~f-------SP~~ 83 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA------------------KLVRFRH-PDVKYLDF-------SPNE 83 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchh------------------heeeeec-CCceeccc-------Cccc
Confidence 455789999999999999887764 8899766432 1222223 35777777 7788
Q ss_pred ceEEEEeCCC---------------cEEEEeccCCceeeeeecccccccccceE-EEEECCCCcEEEEEcCCeEEEEEcC
Q 014125 139 CVFASTTRDH---------------PIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 139 ~~l~~~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~v~d~~ 202 (430)
++|.+=+..+ .+.+||+.+|..+..+....... ..+ -+.|+-+..+++=-....++|+++
T Consensus 84 kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s~~D~y~ARvv~~sl~i~e~- 159 (561)
T COG5354 84 KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFSIDDKYVARVVGSSLYIHEI- 159 (561)
T ss_pred ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeeeecchhhhhhccCeEEEEec-
Confidence 8988865543 49999999999998887765421 133 578888888877325567888886
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEE-----ecCCCeEEEEEcCCceee------------------
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAI-----GSYSQTSAIYREDNMELL------------------ 258 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~-----~~~dg~v~~~d~~~~~~~------------------ 258 (430)
++......+..+. ...+....|+|.+ ...|+. ....+.+++|.+..+..+
T Consensus 160 t~n~~~~p~~~lr------~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~ 233 (561)
T COG5354 160 TDNIEEHPFKNLR------PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL 233 (561)
T ss_pred CCccccCchhhcc------ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence 3221111111110 1335555555531 111222 223344444443322111
Q ss_pred ----------------------------------EEeeccccCeEEEEEccCCCEEEEEe-cCCCeEEEEeCCCCceEEE
Q 014125 259 ----------------------------------YVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 259 ----------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i~d~~~~~~~~~ 303 (430)
.......++|...+|.|.++.+++.+ -++-.+.++|++..- ..
T Consensus 234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~ 311 (561)
T COG5354 234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RF 311 (561)
T ss_pred CceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce--EE
Confidence 11112357888999999888766544 378889999998762 11
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeec-ccccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWIS-GFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
. .....-..+.|+|.+++++.++-| |.+-+||......+. .+.+. ..+-+.|+|+++++.+....-.++
T Consensus 312 ~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 312 Y-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred e-----cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccc
Confidence 1 223344568899999999998876 679999987654433 44432 345568999999998887654443
Q ss_pred ecCCCccccccCCCcEEEEeecccccc
Q 014125 380 VDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 380 vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
.|+.|++|++.....-
T Consensus 385 -----------~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 385 -----------VDNSIKLWDVYGAKVF 400 (561)
T ss_pred -----------cCcceEEEEecCchhh
Confidence 3889999998765543
No 248
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=2.4e-14 Score=114.93 Aligned_cols=273 Identities=14% Similarity=0.227 Sum_probs=179.0
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCc-----ccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-----YDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.|+++.|...|.||++|...|.|.+|.-....-. .+++.+.. .-.+... ..-...|..+.|...
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~---EFDYLkS--leieEKin~I~w~~~--- 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL---EFDYLKS--LEIEEKINAIEWFDD--- 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc---chhhhhh--ccHHHHhhheeeecC---
Confidence 3456999999999999999999999999976543210 11111110 0011111 222357888998542
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCce--e--------------------ee-----eecc-----------cccccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLL--R--------------------CT-----YRAY-----------DAVDEITA 175 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~--~--------------------~~-----~~~~-----------~~~~~~~~ 175 (430)
.....++..+.|.+|++|.+..... + .. +..+ ....|.-.
T Consensus 97 --t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 97 --TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred --CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 2335677888999999998754310 0 00 0000 00123445
Q ss_pred eEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc
Q 014125 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 255 (430)
+.++.|+.|.+.++++.|-.|.+|+++.....+............-..-|++..|+|...+.+.-.+..|.|++-|++..
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 77999999999999999999999999876655443322222222233568899999988888999999999999999843
Q ss_pred ee------eEE----------eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc---------C
Q 014125 256 EL------LYV----------LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS---------E 310 (430)
Q Consensus 256 ~~------~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~ 310 (430)
.. +.. +..-...|..+.|+++|+++++-. --+|++||.+..+.++..+.-.. .
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 21 111 111234688899999999998754 67999999998776655441100 0
Q ss_pred Cccce---EEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 311 HTNQR---ILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 311 ~~~~v---~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
....| ..+.|+.+...+++|+..+..-+|...+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 11222 3478888889999999988888887543
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.4e-10 Score=95.92 Aligned_cols=282 Identities=15% Similarity=0.180 Sum_probs=178.9
Q ss_pred CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccC
Q 014125 81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATT 157 (430)
Q Consensus 81 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~ 157 (430)
+.-|++|++.+..-. ..............-++| +|+++.|+++-++ |.|..|.+..
T Consensus 15 s~gI~v~~ld~~~g~--------------l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGE--------------LSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred CCceEEEEEeCcccc--------------cchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcC
Confidence 456999998743211 111112223345555666 7788889888654 6677777764
Q ss_pred --CceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCC-CC----CcceEEE
Q 014125 158 --GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKE-GQ----AGIMSAI 228 (430)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~----~~~v~~~ 228 (430)
|+....-..... + .+...+++++++++++++ ..|.|.++-++..+.............. .| ...+...
T Consensus 74 ~~G~Lt~ln~~~~~-g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 74 DDGRLTFLNRQTLP-G--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred CCCeEEEeeccccC-C--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcccee
Confidence 443322111110 1 144789999999999965 6799999999876544333222221111 11 1237888
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEee---ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~ 305 (430)
.+.|++..++++.-.--.|.+|++..++....-. .....-..|.|+|++++.++.+.-+++|.+|...........+
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 9999554444444445679999999775432211 2345678999999999999998789999999998753322222
Q ss_pred ecc------cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCC--CCe--ecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 306 YRS------SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQT--GKW--ISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 306 ~~~------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
... -........+.++|+|++|.++.. ...|.+|.+.. +++ +.....+....+.+.|+|.+++|+++..
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 211 123456678899999999988764 24688887764 332 2222334445789999999999999986
Q ss_pred CceeeecCCCccccccCCCcEEEEeecc
Q 014125 375 HRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 375 d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
+ +..|.++....
T Consensus 311 ~----------------sd~i~vf~~d~ 322 (346)
T COG2706 311 K----------------SDNITVFERDK 322 (346)
T ss_pred C----------------CCcEEEEEEcC
Confidence 4 34588887764
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.4e-12 Score=115.67 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=135.7
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC-C--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG- 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~- 191 (430)
.....+....| +|||+.|+..+.+ + .|.+||+.+++....... .. ......|+|||+.|+ +.
T Consensus 215 ~~~~~~~~p~w-------SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g-----~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 215 RSPEPLMSPAW-------SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG-----INGAPRFSPDGKKLALVLS 281 (448)
T ss_pred cCCCcccCceE-------CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC-----CcCCeeECCCCCEEEEEEe
Confidence 34457778888 7899988876543 3 588899988765332221 11 234689999999887 33
Q ss_pred cCCe--EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccC
Q 014125 192 YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++. |+++|+..+.. ..+ ..+........|+|++..++++...++ .|+++|+.+++.... ......
T Consensus 282 ~~g~~~Iy~~dl~tg~~-----~~l----t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~ 351 (448)
T PRK04792 282 KDGQPEIYVVDIATKAL-----TRI----TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQ 351 (448)
T ss_pred CCCCeEEEEEECCCCCe-----EEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCC
Confidence 5554 77777765321 111 122334567899996665556555454 466667776664332 212223
Q ss_pred eEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~ 342 (430)
....+|+|+|++|+..+..++ .|.++|+.++... .+.. .. ......|+|+|+.|+..+.+ | .+++++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~-~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTS-TR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 456799999999988763445 4556777766432 2211 11 12245799999987765543 3 3777787
Q ss_pred CCCeecccccccCCeeEEEEcCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+++....+..+.+.+...+|+|-
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 46666667666667788889873
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.7e-10 Score=95.45 Aligned_cols=280 Identities=13% Similarity=0.154 Sum_probs=176.7
Q ss_pred ccCCCceeEEEECcCCceEEEecC---CCeEEEEeCCC--CCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~---dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+..+-|+|+|+++.|.++-. +|.|.-|.++. +.+.. .......+.+-..++.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~---------------ln~~~~~g~~p~yvsv---- 96 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF---------------LNRQTLPGSPPCYVSV---- 96 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE---------------eeccccCCCCCeEEEE----
Confidence 345667889999999999988855 46777777764 22210 0011111222244555
Q ss_pred CccCCCCceEEEEeC-CCcEEEEeccC-Cceeee---eecccc----cccccceEEEEECCCCcEEEEE--cCCeEEEEE
Q 014125 132 SASDPTSCVFASTTR-DHPIHLWDATT-GLLRCT---YRAYDA----VDEITAAFSVAFNPTGTKIFAG--YNKSVRVFD 200 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d 200 (430)
++++++++++.. .|.|.++-+.. |..... ...... ......+....+.|+++++++. .-..|.+|+
T Consensus 97 ---d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 97 ---DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred ---CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 788999888866 47899999865 433222 211111 0111227788999999999854 456799999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeec---------cccCeEE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHG---------QEGGVTH 270 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~---------~~~~i~~ 270 (430)
+..+..... ... ........+.|.|+|++.-..++.--+++|.+|..... ..+..++. -......
T Consensus 174 ~~dg~L~~~--~~~---~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 174 LDDGKLTPA--DPA---EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred cccCccccc--ccc---ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 984322111 111 11334557899999965555556667999999988763 22222221 1235678
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-cEEEEEcC--CCCee
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-LVHIYDLQ--TGKWI 347 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~--~~~~~ 347 (430)
|..+|+|++|+++.+....|.+|.+......+........+......+.++|+|++|+++.+++ .|.+|..+ +|++-
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 9999999999999877789999998876444434333344555578899999999999988764 58888665 55543
Q ss_pred cccc-cccCCeeEEEEc
Q 014125 348 SGFQ-AAADTVNGFSFH 363 (430)
Q Consensus 348 ~~~~-~~~~~v~~~~~~ 363 (430)
.... .......|+.|.
T Consensus 329 ~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 329 LLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ecccccCCCCcEEEEEc
Confidence 3322 222334555553
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=8.3e-12 Score=114.29 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=134.8
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-c
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y 192 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~ 192 (430)
+...+...+| +|+|+.|+.+..+ ..|++||+.+++...... ... .+.+++|+|+++.|+ +. .
T Consensus 188 ~~~~~~~p~~-------Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~-----~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 188 SREPILSPAW-------SPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG-----MNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CCCceecccC-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC-----CccceEECCCCCEEEEEECC
Confidence 4446777778 7899999887654 479999998886543322 211 455789999998777 33 3
Q ss_pred C--CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCe
Q 014125 193 N--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGV 268 (430)
Q Consensus 193 d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i 268 (430)
+ ..|++|++..+.. ..+ ..+........|+|++..+++++..++ .|+++|+.+++.. .+..+...+
T Consensus 255 ~~~~~i~~~d~~~~~~-----~~l----~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-----TRL----TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CCCccEEEEECCCCCE-----EEC----CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 3 3588888865321 111 122233446689996554555554444 5788888766543 343345667
Q ss_pred EEEEEccCCCEEEEEecCCC---eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcC
Q 014125 269 THVQFSRDGNYLYTGGRKDP---YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQ 342 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~ 342 (430)
..+.|+|+|++|+.++ .++ .|.+||+.+.... .+.. ........|+|+|++|+..+.++ .+++.+..
T Consensus 325 ~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~~~~~--~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVH-REGGGFNIAVMDLDGGGER--VLTD----TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred cCeEECCCCCEEEEEE-ccCCceEEEEEeCCCCCeE--EccC----CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7889999999999888 555 7889998875332 2211 11234468999999888777654 35565544
Q ss_pred CCCeecccccccCCeeEEEE
Q 014125 343 TGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~ 362 (430)
++....+..+.+.+..++|
T Consensus 398 -g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 398 -GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CceeeECCCCCCCcCCCCC
Confidence 4444555444445555544
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2e-12 Score=112.95 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=149.9
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
|...++|....||.+++|+...++....+........ ...+..| .+.....+.+......
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~--t~~~~~w------------------~L~~~~s~~k~~~~~~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG--TCTYTKW------------------GLSADYSPMKWLSLEK 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccC--cceeEEE------------------EEEeccchHHHHhHHH
Confidence 3466899999999999999999988777765433211 2223333 2222111111110000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
... -+. +...++-|...|.|.+|+...++....+. .|.+.|+++.++.+-..|++++ .|+.+..|
T Consensus 63 ---------~~~--~s~-~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~ 129 (541)
T KOG4547|consen 63 ---------AKK--ASL-DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG-ADLKVVYI 129 (541)
T ss_pred ---------Hhh--ccC-CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC-CceeEEEE
Confidence 000 011 55688889999999999999999887775 6889999999999999999999 99999999
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC-----CcE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF-----LPM 368 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~ 368 (430)
+........ .. ......+.+++.+|||..+++|+. .|++||+++++.+..|.+|.++|++++|.-+ |.+
T Consensus 130 ~~~~~~~~~-~~---~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 130 LEKEKVIIR-IW---KEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred ecccceeee-ee---ccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 998764322 22 455667889999999999998874 7999999999999999999999999999876 555
Q ss_pred EEEe-eCCceeeec
Q 014125 369 AASS-SGHRRFPVD 381 (430)
Q Consensus 369 l~s~-~~d~~~~vw 381 (430)
+.++ ..+..+.+|
T Consensus 204 vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 204 VLSSAAAERGITVW 217 (541)
T ss_pred eeeccccccceeEE
Confidence 5444 334445555
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-11 Score=113.46 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=138.2
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG- 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~- 191 (430)
.+...+....| +|||+.|+..+.+ ..|.+|++.+++....... .. .+....|+|+|+.|+ +.
T Consensus 196 ~~~~~~~~p~w-------SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g-----~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 196 QSREPILSPRW-------SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG-----LNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred cCCCceeeeeE-------CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC-----CcCCeEECCCCCEEEEEEc
Confidence 44567888889 7899988876543 3689999988865433221 11 344689999999887 33
Q ss_pred cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccC
Q 014125 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++ .|++||+..+.. ..+ ..+........|+|++..++++...+| .|+++++.+++...... ....
T Consensus 263 ~~g~~~Iy~~d~~~~~~-----~~l----t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~ 332 (430)
T PRK00178 263 KDGNPEIYVMDLASRQL-----SRV----TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNY 332 (430)
T ss_pred cCCCceEEEEECCCCCe-----EEc----ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCC
Confidence 344 688888876321 111 122334556789996665656555444 57777887776433221 2233
Q ss_pred eEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~ 342 (430)
.....|+|+|+.|+.....++ .|.++|+.++... .+.. .. ......|+|+|+.++..+.+ ..|+++++.
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 456789999999988773343 5888998876432 2211 11 12246899999998776654 347777775
Q ss_pred CCCeecccccccCCeeEEEEcCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
+.....+..+.+.+...+|+|-
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CCceEECcCCCCCcCCCccCCC
Confidence 4444455555566778888874
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.3e-11 Score=110.09 Aligned_cols=222 Identities=14% Similarity=0.079 Sum_probs=132.4
Q ss_pred CeeeeeeeccccCccCCCCce--E-EEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-c
Q 014125 120 ESVYDFCWFPHMSASDPTSCV--F-ASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-Y 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~--l-~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~ 192 (430)
.....-+| +|||+. + ++...+| .|.+.++.+++....... .. .....+|+|||+.|+. + .
T Consensus 185 ~~~~sP~w-------SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g-----~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 185 SLSITPTW-------MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG-----NQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred CCcccceE-------ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC-----CccceEECCCCCEEEEEECC
Confidence 34555567 778864 2 2444444 577778887765443322 21 3346799999998883 3 2
Q ss_pred CC--e--EEEEEcCCCC-CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEE--EcCC-ceeeEEeecc
Q 014125 193 NK--S--VRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDN-MELLYVLHGQ 264 (430)
Q Consensus 193 d~--~--i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~--d~~~-~~~~~~~~~~ 264 (430)
+| . +..|++..+. .... .+ ...........+|+|++..++++...+|...+| ++.. +.....+..+
T Consensus 252 ~g~~di~~~~~~~~~g~~g~~~---~l---t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGKPR---RL---LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred CCCcceeEEEeecccCCCCcce---Ee---ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 23 3 3446655421 1100 11 111122345679999666556555566755555 4432 2333444444
Q ss_pred ccCeEEEEEccCCCEEEEEecCC--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---CCcEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---DGLVHIY 339 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw 339 (430)
...+....|+|||+.|+..+..+ ..|.+||+.++... .+. .....+....|+|||++|+.... ...|+++
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLT---TSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--Ecc---CCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 45678899999999998776233 47999999887543 221 11234567899999998775433 3468999
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCC
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
|+.+++...... ..+.+...+|+|..
T Consensus 401 dl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeec-CCCcccCceecCCC
Confidence 998877544333 44567778888753
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=2.3e-12 Score=105.06 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=161.6
Q ss_pred CCCceEEEEeCCCcEEEEec-cCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
|...-+++.+.|.++++|-- +.++.-..+.. ....++.++.+.++...|++| ..|++.-+.+...- .. ..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~----~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf---nk-m~ 105 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH----YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF---NK-MT 105 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhh----hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh---hh-cc
Confidence 34556899999999999953 34443333222 123378899999999999988 78999888775421 11 12
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
.......|...+..+.|+- ....+++.+.|..+.---.+.+..+..+. .....+++.+.-. +.+.+. ..|.|.+-
T Consensus 106 ~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd-~~gqvt~l 180 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGD-HSGQITML 180 (404)
T ss_pred hhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecc-cccceEEE
Confidence 2233467888999999988 66678888888776544444444332221 1112222222222 455555 67777766
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC-eecccccccCCeeEEEEcCCCcEEEEe
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK-WISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
.+...... .+.+..+|...+.+++|.|..+.|++|..|..+.+||+.-.+ ....+.+|.+.|..+...+.-+.|+++
T Consensus 181 r~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~ 258 (404)
T KOG1409|consen 181 KLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC 258 (404)
T ss_pred EEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec
Confidence 65543222 334447899999999999999999999999999999997544 355778899999999998889999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
+.||.|-+|+-
T Consensus 259 ~edg~i~~w~m 269 (404)
T KOG1409|consen 259 GEDGGIVVWNM 269 (404)
T ss_pred cCCCeEEEEec
Confidence 99999999953
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=6.8e-12 Score=102.41 Aligned_cols=255 Identities=12% Similarity=0.149 Sum_probs=169.1
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----eeeeeecccc-------cccccceEEEEECCCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDA-------VDEITAAFSVAFNPTG 185 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~-------~~~~~~v~~~~~~~~~ 185 (430)
...-+.++.| ...|.+|++|..+|.|.++.-.... ....++.|.. ..-...|..+.|.+++
T Consensus 24 eadiis~vef-------~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 24 EADIISAVEF-------DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hhcceeeEEe-------ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 3456778887 6789999999999999999755432 2223333321 1123468889998876
Q ss_pred ---cEEEEEcCCeEEEEEcCCCCCcccc-----------c-----------------ccccCCCCCCCcceEEEEEcCCC
Q 014125 186 ---TKIFAGYNKSVRVFDVHRPGRDFEK-----------Y-----------------STLKGNKEGQAGIMSAIAFSPTH 234 (430)
Q Consensus 186 ---~~l~~~~d~~i~v~d~~~~~~~~~~-----------~-----------------~~~~~~~~~~~~~v~~~~~~~~~ 234 (430)
.+|+++.|.+|++|.+...+..... . ...+.....|...|.++.++.|
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD- 175 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD- 175 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-
Confidence 3555789999999998764432200 0 0011122467888999999984
Q ss_pred CceEEEecCCCeEEEEEcCCcee---eEEeecc-----ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE--E
Q 014125 235 TGMLAIGSYSQTSAIYREDNMEL---LYVLHGQ-----EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY--K 304 (430)
Q Consensus 235 ~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~--~ 304 (430)
...+++ ..|=.|.+|++.-... +..++.+ ..-|++..|+|..-.+++-++..|+|++-|++....... +
T Consensus 176 ~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 445554 4578899999864322 2222322 345889999997554444333899999999984321100 0
Q ss_pred eecc----------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEc-CCCCeecccccccC------------Ce---e
Q 014125 305 LYRS----------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL-QTGKWISGFQAAAD------------TV---N 358 (430)
Q Consensus 305 ~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~------------~v---~ 358 (430)
++.. ..-...|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|.. .| .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 1100 112356788999999999998754 57999999 45677777766532 22 4
Q ss_pred EEEEcCCCcEEEEeeCCceeeecC
Q 014125 359 GFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 359 ~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.++|+.++.+++||+....+++++
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEEEcCCcceEecccccceEEEec
Confidence 578999999999999999999987
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=7.2e-12 Score=114.71 Aligned_cols=205 Identities=19% Similarity=0.173 Sum_probs=133.9
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc---CCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..|.++|....... .+..+.. .+....|+|+|+.|+ +.. ...|++||+.++... .+ ..+..
T Consensus 170 ~~l~~~d~~g~~~~-~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-----~~----~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGANPQ-TITRSRE-----PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-----KV----ASFPG 234 (417)
T ss_pred ceEEEEcCCCCCCE-EeecCCC-----ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----Ee----ecCCC
Confidence 35788887544433 3332222 577889999999998 332 257999998764211 11 12233
Q ss_pred ceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCc
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAV 299 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~ 299 (430)
.+.+++|+|++..++++.+.++ .|++||+.++... .+..+........|+|+|+.|+..+..++ .|+++|+.+..
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4567899996665666666554 5888898876543 33334455567899999998887663333 57788887654
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.. .+ ..+........|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|++++|+..+.+
T Consensus 314 ~~--~l---~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 314 VR--RL---TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EE--Ee---ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeC
Confidence 22 22 12334566789999999999888775 7999999876543 22222 234567899999988887754
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=1.4e-10 Score=99.74 Aligned_cols=249 Identities=13% Similarity=0.102 Sum_probs=149.8
Q ss_pred ECcCCceEEEecC----------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 68 WSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 68 ~sp~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+||||+.|+.+.. +..|.+||..+.+...++.... .+-..+.-.|...+++||
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-----------------~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-----------------GPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-----------------CchhhccCccceEEECCC
Confidence 9999998877655 6799999999886654443321 000000111223334889
Q ss_pred CceEEEEe-C-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc-
Q 014125 138 SCVFASTT-R-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL- 214 (430)
Q Consensus 138 ~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~- 214 (430)
|++|++.. . +..|.+.|+.+++.+..+..... ..-... ++..+++.+.||......+...+........+
T Consensus 116 gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~------~~vy~t-~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 116 NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC------YHIFPT-ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC------cEEEEe-cCCccEEEeecCceEEEEecCCCceEEeeeeee
Confidence 99998776 3 68899999999999988876432 112222 23333343445554444443332211000000
Q ss_pred cC-CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-----eeEEeec-------cccCeEEEEEccCCCEEE
Q 014125 215 KG-NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----LLYVLHG-------QEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 215 ~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----~~~~~~~-------~~~~i~~~~~~~~~~~l~ 281 (430)
.. ...-...+ .|.+.++..+.+..+ |+|.+.|+.... ....+.. ..+.+.-++++|+++.++
T Consensus 189 ~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 189 HPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred cCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 00 00000111 345534556655555 999999965432 2222211 223445599999999988
Q ss_pred EEe-c--------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCCCCeeccc
Q 014125 282 TGG-R--------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 282 ~~~-~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~~ 350 (430)
+.. . ..+.|.++|..+.+... .+. -...+..++++||++ +|++.. .++.|.++|+.+++.+..+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~-~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLR-KIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEE-EEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 843 1 22589999998875443 321 234788899999999 777666 5788999999999998887
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.8e-11 Score=108.02 Aligned_cols=225 Identities=15% Similarity=0.101 Sum_probs=131.4
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--E-EEE-cC--CeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--I-FAG-YN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
..|.+.|...+.... +..... ...+-.|+|||+. + +.+ .+ ..|.+.++..+.. ..+ ...
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~-----~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~l-------t~~ 229 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHS-----LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKI-------LAL 229 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCC-----CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEe-------ecC
Confidence 357777776554433 222221 4556799999974 3 244 33 4577777765322 111 111
Q ss_pred CcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEE-
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW- 293 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~- 293 (430)
.+......|+||+..++++...+| .+..|++..+ +.........+.....+|+|||+.|+..+..+|...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 223456799997666665554433 3444676642 33333332233456789999999888776456655555
Q ss_pred -eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE
Q 014125 294 -DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 294 -d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
++.........+ ......+....|+|||+.|+..+.+ ..|++||+.+++...... ....+....|+|+|+.|
T Consensus 310 ~~~~~~g~~~~~l---t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 310 MQIDPEGQSPRLL---TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHL 385 (428)
T ss_pred EECcccccceEEe---ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEE
Confidence 443221111122 1223455678999999988866543 369999999887643332 33456789999999988
Q ss_pred EEeeCCceeeecCCCccccccCCCcEEEEeeccccc
Q 014125 370 ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 370 ~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~ 405 (430)
+..+.+ .....|.+|++..++.
T Consensus 386 ~f~~~~--------------~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 386 VYSAGN--------------SNESELYLISLITKKT 407 (428)
T ss_pred EEEECC--------------CCCceEEEEECCCCCE
Confidence 765432 1245677777765543
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=108.21 Aligned_cols=201 Identities=15% Similarity=0.215 Sum_probs=147.7
Q ss_pred CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec------cc-------cCccC
Q 014125 69 SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF------PH-------MSASD 135 (430)
Q Consensus 69 sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~-------~~~~~ 135 (430)
.|-+.|+|....||.++||+...+++-.++..... ..+...+..|. |. ...-+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS--------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchh--------------ccCcceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 34567999999999999999998766433322111 11222233331 10 00113
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
.+...++-|...|.|.+|++..++....+....+ .+.|.++.++.+-..|. ++.|+.+..|+.... ..
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h---~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--------~~ 136 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKH---YGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--------VI 136 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCC---CCcceeeecccccCceEecCCceeEEEEecccc--------ee
Confidence 4566788999999999999999998887775433 33888999988888888 569999999998762 22
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC-----CCEEEEEecCCCe
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD-----GNYLYTGGRKDPY 289 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~d~~ 289 (430)
..........+.+++.+|| +..+++++ +.|++||+++++.+..|.+|.++|.+++|-.+ |.+++++...+..
T Consensus 137 ~~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 2233455566899999995 66888776 88999999999999999999999999999877 7888877656777
Q ss_pred EEEEeCCC
Q 014125 290 ILCWDLRK 297 (430)
Q Consensus 290 i~i~d~~~ 297 (430)
+.+|-++.
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 88887654
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=5.1e-11 Score=108.76 Aligned_cols=203 Identities=20% Similarity=0.155 Sum_probs=125.1
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC--CeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.+.++|....... .+..... .+.+..|+|||+.|+ ++ .+ ..|++||+..+... . +. .. .+.
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~-----~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~---lt-~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPE-----PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--K---VT-SF---PGI 263 (448)
T ss_pred EEEEEeCCCCCce-EeecCCC-----cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--E---ec-CC---CCC
Confidence 5666776554432 2222222 677899999999888 44 23 35888888663221 1 11 11 122
Q ss_pred eEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCce
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~ 300 (430)
.....|+|++..++++.+.+|. |+++|+.+++.. .+..+.......+|+|||+.|+..+..++ .|+++|+.++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3467999976666666666775 777888876644 34445556678899999998887763444 466667766543
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
. .+. ..+ ......+|+|+|++|+..+.+ + .|.++|+.+++... +... .......|+|+|+.|+..+.
T Consensus 343 ~--~Lt-~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 343 S--RLT-FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred E--EEe-cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe
Confidence 2 221 111 223356899999998776553 3 46667888776532 2211 12234589999998877664
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.1e-10 Score=107.06 Aligned_cols=203 Identities=16% Similarity=0.130 Sum_probs=129.2
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc-C--CeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-N--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.|.++|...+.... +..+.. .+....|+|+|+.|+ ++. + ..|.+|++..+... .+ ....+.
T Consensus 180 ~l~~~d~~g~~~~~-l~~~~~-----~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-----~l----~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARAVT-LLQSRE-----PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-----QI----TNFEGL 244 (430)
T ss_pred EEEEECCCCCCceE-EecCCC-----ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-----Ec----cCCCCC
Confidence 47777876554333 322222 678899999999887 442 2 46889998764221 11 111223
Q ss_pred eEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCce
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~ 300 (430)
.....|+|++..++++...+| .|+++|+.+++.. .+..+........|+|+|+.|+..+..+| .|+++|+.++..
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 456899996665555665555 5888899877654 34445555677899999998877663444 577778776643
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.. +.. .. .......|+|+|++|+..+.+ + .|.++|+.+++... +. +........|+|+|++++.++.
T Consensus 324 ~~--lt~-~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 324 ER--VTF-VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EE--eec-CC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEe
Confidence 22 111 11 223457899999998876643 3 48899998876532 22 1222345689999998887764
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=1.5e-10 Score=99.68 Aligned_cols=280 Identities=15% Similarity=0.223 Sum_probs=180.8
Q ss_pred ceeEEEECcCCceEEEecCCC---------------eEEEEeCCCCCCcccccccccccccC---------cccc-----
Q 014125 62 FLKGIKWSPDGSSFLTSSEDK---------------TLRIFSLPENGISYDVNACSLAKDQD---------SYEA----- 112 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~----- 112 (430)
.|..+.|||.++||.|-+..+ .+.+||..++.++............. .+..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 488999999999999977644 38999999988766543322110000 0000
Q ss_pred eeeec--------------CCCeeeeeeeccccCccCCCCceEEE-----EeCCCcEEEEeccCCceeeeeecccccccc
Q 014125 113 SLVVT--------------EGESVYDFCWFPHMSASDPTSCVFAS-----TTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173 (430)
Q Consensus 113 ~~~~~--------------~~~~v~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 173 (430)
.+.++ ....+....|+|. .++..|+. ....+.+++|.+..+..+.+-.....
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~-----~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---- 223 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPE-----GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---- 223 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCC-----CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----
Confidence 00000 1134555666553 12333443 35678899999887766655443332
Q ss_pred cceEEEEECCCCcEEEEE------------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEE-
Q 014125 174 TAAFSVAFNPTGTKIFAG------------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI- 240 (430)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~- 240 (430)
.-..+.|++.|+++++- ....+.++++.... +... ....++|...+|.|.+.++.++
T Consensus 224 -~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--------i~V~-~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 224 -SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS--------IPVE-KDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred -cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc--------ccee-ccccccceeeeecccCCceeEEe
Confidence 23468899999887631 12567888886421 1111 1346789999999966555444
Q ss_pred ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccCCccceEE
Q 014125 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSEHTNQRIL 317 (430)
Q Consensus 241 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 317 (430)
|-....+.++|++.. ....+ ....=+.+.|+|.+++++.++ -| |.+.+||..........+ .......
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag-F~nl~gni~i~~~~~rf~~~~~~-----~~~n~s~ 364 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG-FDNLQGNIEIFDPAGRFKVAGAF-----NGLNTSY 364 (561)
T ss_pred cccccceeecccccc-eEEec--CCcccccccccCcccEEEEec-CCccccceEEeccCCceEEEEEe-----ecCCceE
Confidence 357889999999865 33333 345557789999999999977 44 689999988765444232 1223456
Q ss_pred EEEcCCCCEEEEEc------cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 318 FDIEPSGRHLGTGG------QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 318 ~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
+.|+|++.++.+.. .|+.|.|||+...+.. ..+.+.|.|.+++..+.+.+..
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~~ 422 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCPK 422 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCCC
Confidence 78999999987764 3788999998744322 5567889999988888877653
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.2e-12 Score=113.58 Aligned_cols=296 Identities=16% Similarity=0.196 Sum_probs=187.4
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+..+.||...|+.++--.+.+-+++++.|++|++|.++...-......++ .....|..+|.++.|..
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----------fTY~aHkk~i~~igfL~-- 794 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----------FTYQAHKKPIHDIGFLA-- 794 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----------eEhhhccCcccceeeee--
Confidence 456789999999999877777889999999999999997543222222222 23345778899888833
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE--EcCCeEEEEEcCCCCCccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~d~~i~v~d~~~~~~~~~ 209 (430)
+.+.++ +.||-|.+||.--++..............+.|.++.- -+...+++ +...+|+++|.+..+...+
T Consensus 795 -----~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 795 -----DLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred -----ccceee--eccCcceeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeecccccceee
Confidence 444454 4588899999887776654433222222223444331 12333333 4789999999887543221
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.. .....+....+++++..+ .++.++++-.+|.|.+.|.++|+.+......+.....++ .|..+.|+.+. .|.+
T Consensus 867 ~k---Vcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa-ldHs 940 (1034)
T KOG4190|consen 867 LK---VCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA-LDHS 940 (1034)
T ss_pred EE---eccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc-ccce
Confidence 11 111234556789999999 788999999999999999999998888776666666665 46677788777 8999
Q ss_pred EEE-EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----Ceecccc--cccCCeeEEEE
Q 014125 290 ILC-WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQ--AAADTVNGFSF 362 (430)
Q Consensus 290 i~i-~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~--~~~~~v~~~~~ 362 (430)
+.+ |-.-.+... ... .....+..-+ ..-|..|+++...+.+.||.-... ..+..++ ...+..++++-
T Consensus 941 laVnWhaldgimh-~q~---kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~ 1014 (1034)
T KOG4190|consen 941 LAVNWHALDGIMH-LQD---KPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAP 1014 (1034)
T ss_pred eEeeehhcCCeee-ecc---CCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeee
Confidence 988 876554221 111 1111111101 112667888877778888853210 1111121 23456788888
Q ss_pred cCCCcEEEEeeCCceee
Q 014125 363 HPFLPMAASSSGHRRFP 379 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~ 379 (430)
-|-..-+..|...|.+.
T Consensus 1015 LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 1015 LPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred ccccchhhccCCCCcee
Confidence 88766666666555544
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=3.7e-12 Score=114.08 Aligned_cols=297 Identities=16% Similarity=0.227 Sum_probs=188.0
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC--eeeeeeeccccCccCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE--SVYDFCWFPHMSASDPT 137 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 137 (430)
.+++.++..+|.|+-+|.++.-| +.+-|++.. +.+...++|.. .|-.+.|+|+ |.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p-----------------~~ppr~l~h~tpw~vad~qws~h-----~a 80 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP-----------------FTPPRWLHHITPWQVADVQWSPH-----PA 80 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCC-----------------CCCceeeeccCcchhcceecccC-----CC
Confidence 45688999999999999999876 456677643 22223333332 3677888874 44
Q ss_pred CceEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
..+-++......-.+|++..... ...+-.| +|...|+.+.|+|+..-+. ++.|..+..||++.+..+.....
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lh---ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-- 155 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLH---GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-- 155 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEe---cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee--
Confidence 55566666666678888754321 1122222 2334899999999986655 45899999999998655443221
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccC-CCEEEEEecCCCeEEE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRD-GNYLYTGGRKDPYILC 292 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~i 292 (430)
.....-+.++|+..+++.+| .+....|.+||++.+ .++..+++|...|+.+.|..- ...+++++ .|++|+.
T Consensus 156 -----~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkf 228 (1081)
T KOG0309|consen 156 -----SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKF 228 (1081)
T ss_pred -----cccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceee
Confidence 22234577899885555544 556778999999876 567788889899999999764 33566677 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCC--EEEEEccCCcEEEEEcC---------C-CCeecccccccCCeeEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR--HLGTGGQDGLVHIYDLQ---------T-GKWISGFQAAADTVNGF 360 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~---------~-~~~~~~~~~~~~~v~~~ 360 (430)
||........... .....+++.-.+-|-|. ++.---.++.+.+++-+ + .+++..|.||.+.|..+
T Consensus 229 w~y~kSt~e~~~~---vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 229 WDYSKSTTESKRT---VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eccccccccccee---ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 9998764433222 23445666677777553 22222222234444332 2 46788999999999988
Q ss_pred EEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeec
Q 014125 361 SFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
.|...+.-. .|... ..-+|+|-+.|..+|+|-+.
T Consensus 306 lWR~r~e~~----~d~d~---rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 306 LWRKRKECD----GDYDS---RDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhccccc----CCCCc---cceeEEEeecCCceEeeecc
Confidence 887543310 00000 11135555666677777654
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=2.5e-11 Score=112.89 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=149.9
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.|....+.-+.+.++.++.+..+.+||............... ...++.+ ...++++.-
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er----------------~~l~~~~----~~g~s~~~~ 146 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER----------------CTLYSSL----IIGDSAEEL 146 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce----------------EEEEeEE----EEeccCcEE
Confidence 44455556666677888888899999999987655433332210 1111111 112266778
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
++++|+.-+.|.+|+.........+.+|.+ .|.++.|+.+|.+++ ++.|.++++|++++... .....
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG-----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-------~~~~~ 214 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEG-----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-------LGCTG 214 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCC-----ceEEEEEccCCcEEEEEecCcceeeeecccccc-------cCccc
Confidence 999999999999999874433333455444 999999999999999 67999999999987532 22345
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+|+..+..+.|.| . .+++++.|.+.++|+.. +..+..+..|. ..|..++..++...+++++ .|+.+++||+..
T Consensus 215 fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 215 FGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNG 289 (967)
T ss_pred ccccceeEEEEecc-c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhc
Confidence 78999999999998 4 89999999999999765 44455777776 4799999999888889998 999999999764
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.1e-09 Score=109.27 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=157.2
Q ss_pred cCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccc---------cccccceEEEEECCCCcEEEE-E-cCCeEEEEEc
Q 014125 134 SDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---------VDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDV 201 (430)
Q Consensus 134 ~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~ 201 (430)
+++ ++.++++-+.++.|+++|.. +..+..+..... .........+++++++..|++ . .++.|+++|+
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 354 45677777788899999975 444433332110 011124578999998876654 3 4578999987
Q ss_pred CCCCCccccccc---ccCCCCC-------CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------
Q 014125 202 HRPGRDFEKYST---LKGNKEG-------QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------- 263 (430)
Q Consensus 202 ~~~~~~~~~~~~---~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------- 263 (430)
..... ..+.. ......+ .-.....++++|+++.++++...++.|++||..++... .+.+
T Consensus 654 ~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~ 730 (1057)
T PLN02919 654 VNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLN 730 (1057)
T ss_pred CCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCC
Confidence 65211 00000 0000000 01234689999977778888888999999998776542 1111
Q ss_pred -------cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe---------eccc--------CCccceEEEE
Q 014125 264 -------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL---------YRSS--------EHTNQRILFD 319 (430)
Q Consensus 264 -------~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~--------~~~~~v~~~~ 319 (430)
.-.....|+++|+++.|+++...++.|++||+.++......- .... ..-.....++
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 012356799999999777777578999999998754321110 0000 0112345789
Q ss_pred EcCCCCEEEEEccCCcEEEEEcCCCCeecccc-------------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 320 IEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-------------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
++++|.++++-..+++|++||..++....... +.-....+++++++|+++++-+.++.|++|+...
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 99999988888899999999998776542211 1122567899999999888888777777776543
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=1.2e-11 Score=110.88 Aligned_cols=237 Identities=14% Similarity=0.193 Sum_probs=162.6
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--c-E
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--T-K 187 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-~ 187 (430)
...+.+.-.+++.++.. +|.|+-++.++.-| +.+.|+...-....+-.|... -.+-.+.|+|.. . .
T Consensus 16 ~kslsl~v~~~~~a~si-------~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp---w~vad~qws~h~a~~~w 84 (1081)
T KOG0309|consen 16 GKSLSLKVDGGFNAVSI-------NPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP---WQVADVQWSPHPAKPYW 84 (1081)
T ss_pred CceeEEEecCcccceee-------ccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc---chhcceecccCCCCcee
Confidence 33444444556666666 67788899998888 667777653222111111111 145567777764 2 3
Q ss_pred EEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeecccc
Q 014125 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG 266 (430)
Q Consensus 188 l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~ 266 (430)
++......-.+|++..... ..+...+.+|...++.+.|+|.....+++++.|..+..||+++.. ++..+..-..
T Consensus 85 iVsts~qkaiiwnlA~ss~-----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSS-----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred EEecCcchhhhhhhhcCCc-----cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 4444566677888876433 223334578899999999999999999999999999999999864 5555555556
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
....++|+-....+++.+ ..+.|++||++.+..+...+ .+|...++.++|..- ...+.+.+.||+|++||.....
T Consensus 160 ~asqVkwnyk~p~vlass-hg~~i~vwd~r~gs~pl~s~---K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASS-HGNDIFVWDLRKGSTPLCSL---KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cCceeeecccCcchhhhc-cCCceEEEeccCCCcceEEe---cccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 678899987666666666 78899999999987776555 457888888888653 2457888999999999987543
Q ss_pred ee-cccccccCCeeEEEEcCCCc
Q 014125 346 WI-SGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 346 ~~-~~~~~~~~~v~~~~~~~~~~ 367 (430)
.. ........+|..-.+.|-|.
T Consensus 236 ~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 236 TESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cccceeccccCcceeccccccCc
Confidence 22 12222345677777777655
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.5e-10 Score=98.55 Aligned_cols=256 Identities=13% Similarity=0.191 Sum_probs=158.1
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
++..|++|..+.|-- ..+.+.+|++.+.+. ....-+...|..+.++| .|....+|+
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~------------------~~~kl~~~~i~~f~lSp-----gp~~~~vAv 184 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKT------------------IQHKLSVSGITMLSLSP-----GPEPPFVAV 184 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccc------------------eeeeeeccceeeEEecC-----CCCCceEEE
Confidence 578888876544322 245799999875211 11112345777777766 344445553
Q ss_pred -----EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EE--cC---------CeEEEEEcCCCC
Q 014125 144 -----TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG--YN---------KSVRVFDVHRPG 205 (430)
Q Consensus 144 -----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~--~d---------~~i~v~d~~~~~ 205 (430)
.+.-+.+++|...............-.. . .=..+.|++-|.-|+ ++ -| .+++++++....
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk-a-dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK-A-DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhccccc-c-ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 3556689999887332211111100000 0 223678888775443 32 23 367777776211
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEE-ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
. ... -...++|.++.|+|.+..+.++ |-.-..+.+||++ +.++..+. +++-+++-|+|.|++|+.+|
T Consensus 263 ~----~V~-----L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 263 V----SVP-----LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred E----EEe-----cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEee
Confidence 1 011 1235789999999955444333 5567889999997 56666554 67789999999999999888
Q ss_pred c--CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc------CCcEEEEEcCCCCeecccccccCC
Q 014125 285 R--KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ------DGLVHIYDLQTGKWISGFQAAADT 356 (430)
Q Consensus 285 ~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~ 356 (430)
. -.|.+-+||+.+.+.+. .. .-..-+-+.|+|||+++++++. |+.++||+.. |..+....-. ..
T Consensus 331 FGNL~G~mEvwDv~n~K~i~-~~-----~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~-sE 402 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIA-KF-----KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFK-SE 402 (566)
T ss_pred cCCCCCceEEEeccchhhcc-cc-----ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhhh-Hh
Confidence 3 23789999998854332 21 2233456899999999998875 6889999987 5554433211 15
Q ss_pred eeEEEEcCC
Q 014125 357 VNGFSFHPF 365 (430)
Q Consensus 357 v~~~~~~~~ 365 (430)
...+.|-|.
T Consensus 403 L~qv~W~P~ 411 (566)
T KOG2315|consen 403 LLQVEWRPF 411 (566)
T ss_pred Hhheeeeec
Confidence 677778764
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=8.8e-12 Score=121.88 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=145.1
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..|.++.- +|...+.++|+.||.+++|....++.+..++.... ..|+.+.|+.+|..+..+ .||.+.+
T Consensus 2209 ~~v~r~~s-------Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2209 ENVRRMTS-------HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----SRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred CceeeecC-------CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc----chhhhhhhcccCCceeeeccCCceee
Confidence 44555554 45566899999999999999999988888776543 378899999999888755 8999999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCc-eeeEEeeccccCeEEEEEc
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~ 274 (430)
|.+.. ..-.....|....+.+.|-. ..+++++ .++.+.+||..-. .....-..|.+.++++++.
T Consensus 2278 ~q~~p---------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2278 WQASP---------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred cccCC---------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEc
Confidence 99862 11112256666677777754 3566543 4688999995432 1111226799999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
|..+.|++|| .+|.|++||++..+.. |.-.. ++ ...++++|+..|.++||++.....+..++
T Consensus 2346 P~~qllisgg-r~G~v~l~D~rqrql~---------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2346 PKHQLLISGG-RKGEVCLFDIRQRQLR---------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcceEEEecC-CcCcEEEeehHHHHHH---------HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999 9999999999875321 11111 44 56799999999999999999888877776
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.8e-09 Score=97.87 Aligned_cols=295 Identities=16% Similarity=0.242 Sum_probs=188.4
Q ss_pred cceeecccCCCceeEEEECcCC------------ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecC
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDG------------SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~------------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (430)
+.+.+...|...|+.+.|.|-. -.||++...|.|.+||+..+... ....++
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------~~l~~~ 108 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------NWLSHS 108 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------hhhcCC
Confidence 4566788899999999998731 25777888899999999765332 223345
Q ss_pred CCeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEE-EEcCCe
Q 014125 119 GESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKS 195 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~ 195 (430)
..++.+++|.|. -++. ..|+.-....++.+|+..+|+.......... ...|+.+.|-. +.+. .|..|.
T Consensus 109 ~~~~qdl~W~~~----rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 109 NDSVQDLCWVPA----RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred Ccchhheeeeec----cCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeCCCCcceEEEEccCce
Confidence 578999999885 3344 5677777888999999999998877665543 55668887743 4444 556666
Q ss_pred EEEEEcCCCCCc---ccccccccC--C----------CCCCC------c---ceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 196 VRVFDVHRPGRD---FEKYSTLKG--N----------KEGQA------G---IMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 196 i~v~d~~~~~~~---~~~~~~~~~--~----------~~~~~------~---~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
+.+.+.-...++ .+.+..... . ...+. . ....++|+|.-.+.++ ......+.++|
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~d 258 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFD 258 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEc
Confidence 666654321111 110000000 0 00000 0 1223567884444444 44567799999
Q ss_pred cCCceeeEEeeccccCeEEEEEccCCC--EEEEEecCCCeEEEEeCCCC----------------ce--EEEE-------
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFSRDGN--YLYTGGRKDPYILCWDLRKA----------------VQ--VVYK------- 304 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~d~~i~i~d~~~~----------------~~--~~~~------- 304 (430)
++-..++....-..+.+.-+.+-|+++ .|++.. .||.+.+|-.+.. .+ .+..
T Consensus 259 le~~~~l~vvpier~~akfv~vlP~~~rd~LfclH-~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~ 337 (1062)
T KOG1912|consen 259 LEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH-SNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV 337 (1062)
T ss_pred chhhceeEEEEeccCCcceeEeccCCCcceEEEEe-cCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence 988888777766667777777777654 688888 8999988854320 00 0000
Q ss_pred --------------------------------------------------------------eecccCCccceEEEEEcC
Q 014125 305 --------------------------------------------------------------LYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 305 --------------------------------------------------------------~~~~~~~~~~v~~~~~~~ 322 (430)
+....+|....++....|
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p 417 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRP 417 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeeccc
Confidence 000012223333332222
Q ss_pred -----------CC-------CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 323 -----------SG-------RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 323 -----------~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.| .++|.|...|+|.++|+.++.....+..|...|.++.|.....++-.+.
T Consensus 418 ~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsy 486 (1062)
T KOG1912|consen 418 MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSY 486 (1062)
T ss_pred CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeee
Confidence 11 3678999999999999999999999999999999999987766554443
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.33 E-value=5.6e-09 Score=94.14 Aligned_cols=263 Identities=11% Similarity=0.025 Sum_probs=152.7
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.+..+++++.+|.|.-+|..+++..-...... .+. -.| ..++..++.++.+|.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------------------~~~---~~p-----~v~~~~v~v~~~~g~l 117 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE------------------RLS---GGV-----GADGGLVFVGTEKGEV 117 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC------------------Ccc---cce-----EEcCCEEEEEcCCCEE
Confidence 36688888999999999988875432221110 000 001 1245678888899999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIA 229 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 229 (430)
..+|..+|+.+....... .+.+.....++..++...++.|..||..++...++....... ..... .+..
T Consensus 118 ~ald~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~----~sp~ 187 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSS------EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS----ASPV 187 (377)
T ss_pred EEEECCCCcEeeeeccCc------eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC----CCCE
Confidence 999999999887665432 121111112445555568899999999876543322110000 00000 1111
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc----C---eEEEEEcc--CCCEEEEEecCCCeEEEEeCCCCce
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----G---VTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~----~---i~~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
.. + ..++.+..++.+..+|.++++.+........ . ...+.-+| .+..+++++ .+|.++.||..+++.
T Consensus 188 ~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 188 IA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRV 263 (377)
T ss_pred EE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcE
Confidence 11 2 3677888899999999999887654331100 0 00011111 355778887 899999999998854
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCceee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
..... .. ...... ..+..++.++.+|.++.+|..+++.+........ ....... .+..|++++.+|.+.
T Consensus 264 ~W~~~-----~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 264 LWKRD-----AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred EEeec-----cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence 43221 11 111122 2466788888999999999999988765532211 1222222 355777777666666
Q ss_pred ecCC
Q 014125 380 VDDF 383 (430)
Q Consensus 380 vw~~ 383 (430)
+++.
T Consensus 334 ~~d~ 337 (377)
T TIGR03300 334 WLSR 337 (377)
T ss_pred EEEC
Confidence 6543
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=3.3e-08 Score=84.92 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=128.8
Q ss_pred CCCcEEEEEcCCeEEEEEcCCCCCcccccc-ccc-C-CCCCCCcceEEEE-EcCCCCceEEEecCCCeEEEEEcCCceee
Q 014125 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYS-TLK-G-NKEGQAGIMSAIA-FSPTHTGMLAIGSYSQTSAIYREDNMELL 258 (430)
Q Consensus 183 ~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~-~~~-~-~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 258 (430)
.||+.|+-...|.|.+||..+.......+. .+. . .......+..-+. |++-++.+++..+. |...+.+...+-.+
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 368888888889999999876432211111 010 0 0000011111122 44545667777764 66666665544433
Q ss_pred EEeeccccCeEEEEEccCCCEEEEEecCCC-eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
+. ++.+.|.-..+..+++-++.+. .|| .+-+||.+++... .+ ...-+.|.++..+|+|++++.+.....+.
T Consensus 355 qv--~~~~~VrY~r~~~~~e~~vigt-~dgD~l~iyd~~~~e~k--r~---e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 355 QV--GKKGGVRYRRIQVDPEGDVIGT-NDGDKLGIYDKDGGEVK--RI---EKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred Ec--CCCCceEEEEEccCCcceEEec-cCCceEEEEecCCceEE--Ee---eCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 32 4677788888888888888888 787 9999999987422 22 45667899999999999999999999999
Q ss_pred EEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 338 IYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 338 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
+.|+++++....-+...+-|+.+.|||+++++|-+--+|.
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 9999999876655666778999999999999998865543
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=120.13 Aligned_cols=194 Identities=18% Similarity=0.298 Sum_probs=145.1
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
....|-..|.++.=+|...+.+||+.||.|++|....++.+ ..........|..+.|
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v----------------~~~rt~g~s~vtr~~f------- 2259 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV----------------VCFRTAGNSRVTRSRF------- 2259 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE----------------EEeeccCcchhhhhhh-------
Confidence 44556677888988998899999999999999988755322 1122222256777777
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~ 210 (430)
+.+|+.+..+..||.+.+|... .++....+.|+. ....+.|-. ..++ +| .++.+.+||...+....
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk-----~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s-- 2329 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK-----ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS-- 2329 (2439)
T ss_pred cccCCceeeeccCCceeecccC-CcceeccccCCc-----cccceeeee--hhhhccccCCCCCcccchhcccCcccc--
Confidence 6789999999999999999987 444444555443 566677755 4444 33 57899999986643321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
+. ...|.+.++++++-| ...+|++|+.+|.|++||++..+..+.++. +. ...++++++ ..|.+
T Consensus 2330 ---~v--~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~i 2392 (2439)
T KOG1064|consen 2330 ---LV--HTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNI 2392 (2439)
T ss_pred ---ee--eeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccce
Confidence 11 167888999999999 788999999999999999998877766653 44 556788888 99999
Q ss_pred EEEeCCCC
Q 014125 291 LCWDLRKA 298 (430)
Q Consensus 291 ~i~d~~~~ 298 (430)
+||++...
T Consensus 2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred EEEEcccc
Confidence 99999876
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=9.6e-09 Score=100.81 Aligned_cols=289 Identities=14% Similarity=0.214 Sum_probs=179.6
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..+.|.++.|-++...|+.+..+|.|.+...+... ..........-...|.+++| |||+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~--------------~~~~~E~VG~vd~GI~a~~W-------SPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP--------------DEDEIEIVGSVDSGILAASW-------SPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC--------------CCceeEEEEEEcCcEEEEEE-------CCCc
Confidence 45679999999999999999999999998332100 01112223334468999999 8899
Q ss_pred ceEEEEeCCCcEEEEecc---------------C--------Cceeeeeecccccc-------------------cccce
Q 014125 139 CVFASTTRDHPIHLWDAT---------------T--------GLLRCTYRAYDAVD-------------------EITAA 176 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~---------------~--------~~~~~~~~~~~~~~-------------------~~~~v 176 (430)
.+|+..+.++++.+..-. . |+...+|.+..+.. ....-
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~ 212 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR 212 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc
Confidence 999999999988775421 0 11111121111110 11134
Q ss_pred EEEEECCCCcEEEEE-c---C---CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---CCe
Q 014125 177 FSVAFNPTGTKIFAG-Y---N---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQT 246 (430)
Q Consensus 177 ~~~~~~~~~~~l~~~-~---d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~ 246 (430)
..++|-.||.+++++ . . ..++||+-+. .+....+.-.+--.+++|.| .++++|+... ...
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG---------~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG---------ELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHD 282 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc---------eEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcE
Confidence 578999999999954 2 2 5789998652 11111122233345789999 7778888764 345
Q ss_pred EEEEEcCCceeeEE----eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 247 SAIYREDNMELLYV----LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 247 v~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
|.+|.-+ |-.... +......|..+.|++++..|++.. .|. |.+|-..+..-..+..... .....+..+.|+|
T Consensus 283 VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWYLKqei~~-~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 283 VVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWYLKQEIRF-SSSESVNFVKWDP 358 (928)
T ss_pred EEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEEEEEEEEc-cCCCCCCceEECC
Confidence 6666543 332222 223456899999999999999976 454 9999988764333322221 2233344599999
Q ss_pred CC-CEEEEEccCCcEEEEEcC----CC----------------Ceec--ccc-------------cccCCeeEEEEcCCC
Q 014125 323 SG-RHLGTGGQDGLVHIYDLQ----TG----------------KWIS--GFQ-------------AAADTVNGFSFHPFL 366 (430)
Q Consensus 323 ~~-~~l~~~~~dg~i~vwd~~----~~----------------~~~~--~~~-------------~~~~~v~~~~~~~~~ 366 (430)
.. ..|...+.+|.+..++.. .+ ..+. .|+ ....+|.+++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 64 346666665666554431 11 1100 010 134679999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
..+++-..||.+.+|.
T Consensus 439 ~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYE 454 (928)
T ss_pred CeEEEEECCCCEEEEE
Confidence 8899999888888874
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=7.8e-09 Score=103.39 Aligned_cols=268 Identities=13% Similarity=0.113 Sum_probs=155.4
Q ss_pred eEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee-eeeeccccCccCCCCceE
Q 014125 64 KGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY-DFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 64 ~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l 141 (430)
..++++++ ++.+++-+.++.|++||...... ....... ..... .+... +.-..|...+++++++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g----~~G~~-------dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTG----EEGLR-------DGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCC----CcCCC-------CCchhccccCCCcEEEEeCCCCEE
Confidence 46788874 66777777788999999864321 1110000 00000 00000 001123344447777766
Q ss_pred EEEe-CCCcEEEEeccCCceeeeeeccccc------------ccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCC
Q 014125 142 ASTT-RDHPIHLWDATTGLLRCTYRAYDAV------------DEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 142 ~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~-~~l~~~-~d~~i~v~d~~~~~~ 206 (430)
+++. ..+.|+++|+.++.. .++...... ........++++|++ .++++. .++.|++||...+..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 6554 457799999877653 333211000 001234689999954 444443 678999999865321
Q ss_pred cccc----cccccCC--CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----------------
Q 014125 207 DFEK----YSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----------------- 263 (430)
Q Consensus 207 ~~~~----~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----------------- 263 (430)
.... ....... ....-.....++++|++..++++-+.++.|++||+.++.......+
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 0000 0000000 0011134677999996666778888889999999987653211100
Q ss_pred ----cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc----------cCCccceEEEEEcCCCCEEEE
Q 014125 264 ----QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS----------SEHTNQRILFDIEPSGRHLGT 329 (430)
Q Consensus 264 ----~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~ 329 (430)
.-.....++++++|..+++-. .++.|++||..++.... ..... ...-.....++++++|+.+++
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 011246899999998666665 89999999998763221 11110 112235678999999999888
Q ss_pred EccCCcEEEEEcCCCCe
Q 014125 330 GGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~~~ 346 (430)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999998765
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=5e-09 Score=94.43 Aligned_cols=266 Identities=14% Similarity=0.115 Sum_probs=149.8
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
++..++.++.+|.+..+|..+++..-.... ...+.+ .| .-.+..++.++.+|.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------~~~~~~---~p-----~v~~~~v~v~~~~g~l 157 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL------------------SSEVLS---PP-----LVANGLVVVRTNDGRL 157 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc------------------Cceeec---CC-----EEECCEEEEECCCCeE
Confidence 355677788888999999887754322111 011110 01 0024467778889999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcc---e-E
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI---M-S 226 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---v-~ 226 (430)
..||..+|+.+..+.............+.... ++..+++..++.+..+|..++...+........ ....... + .
T Consensus 158 ~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~~~~ 235 (377)
T TIGR03300 158 TALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVDVDG 235 (377)
T ss_pred EEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhccCC
Confidence 99999999987776543321000000111111 343333457789999998775433221100000 0000000 0 0
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
...+ .+..+++++.+|.++.||..+++.+..... ....... ..+..+++++ .+|.+..+|..++.......
T Consensus 236 ~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~- 306 (377)
T TIGR03300 236 DPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPA--VDDNRLYVTD-ADGVVVALDRRSGSELWKND- 306 (377)
T ss_pred ccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCce--EeCCEEEEEC-CCCeEEEEECCCCcEEEccc-
Confidence 1112 123677788899999999999987766542 1122222 2466788887 89999999998885443221
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCee-EEEEcCCCcEEEEeeCCceee
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVN-GFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~~~ 379 (430)
... ......... .+..|++++.+|.|+++|..+++.+..++.+...+. ...+. ++ .|+.++.||.+.
T Consensus 307 ~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~ 374 (377)
T TIGR03300 307 ELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLY 374 (377)
T ss_pred ccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEE
Confidence 101 111111122 367889999999999999999999988876654332 22222 23 466666555543
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=1.9e-08 Score=86.30 Aligned_cols=174 Identities=16% Similarity=0.178 Sum_probs=124.7
Q ss_pred ECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC
Q 014125 68 WSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (430)
Q Consensus 68 ~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 146 (430)
|++ +|.+++..|. |..-|.+...+ ..+.+.+...|.-..+ ..+++-++.|..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-------------------~~iqv~~~~~VrY~r~-------~~~~e~~vigt~ 379 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDG-------------------YSIQVGKKGGVRYRRI-------QVDPEGDVIGTN 379 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCC-------------------eeEEcCCCCceEEEEE-------ccCCcceEEecc
Confidence 444 5788888876 45555544322 2244555566776666 556678999999
Q ss_pred CC-cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DH-PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
|| .+-++|..+++......... .|.++..+++|++++++ ....|.+.|++++.... .-....+-
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vididngnv~~--------idkS~~~l 445 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL--------IDKSEYGL 445 (668)
T ss_pred CCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE--------ecccccce
Confidence 99 89999999987665544333 78899999999999877 56789999998854321 11334467
Q ss_pred eEEEEEcCCCCceEEEecCCC----eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
|+.+.|+| +++++|-+-.+| .|++||+..++...... ..+.=.+-+|.|++++|+--+
T Consensus 446 Itdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 446 ITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 99999999 777888887765 58999999887665443 333446778999999887665
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.28 E-value=2.4e-08 Score=84.13 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=141.9
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEEC-CCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++.++++--..+.|..|+..+++... +... ....+++. +++.++++.. +.+.++|..+.. ...+....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-------~~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~--~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-------GPNGMAFDRPDGRLYVADS-GGIAVVDPDTGK--VTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EESS-------SEEEEEEECTTSEEEEEET-TCEEEEETTTTE--EEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-EecC-------CCceEEEEccCCEEEEEEc-CceEEEecCCCc--EEEEeecc
Confidence 56777777778999999998876543 2221 25577777 6766655554 555666876631 11111110
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. ........+.+++.| +++++++.... |.|..++.. ++...... .-...+.|+|+|+++.|+++....
T Consensus 80 ~-~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 80 D-GGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp T-TCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTT
T ss_pred C-CCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccccc
Confidence 0 111345688999999 55566665433 568888877 55443333 345678999999999888776688
Q ss_pred CeEEEEeCCCCce-E--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEc-
Q 014125 288 PYILCWDLRKAVQ-V--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFH- 363 (430)
Q Consensus 288 ~~i~i~d~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~- 363 (430)
+.|..|++..... . ...+..........-.++++.+|++.++....+.|.+++.+ |+.+..+......+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 9999999864332 1 11122222223457789999999988887788999999988 98888887665689999994
Q ss_pred CCCcEEEE
Q 014125 364 PFLPMAAS 371 (430)
Q Consensus 364 ~~~~~l~s 371 (430)
++.+.|..
T Consensus 235 ~~~~~L~v 242 (246)
T PF08450_consen 235 PDGKTLYV 242 (246)
T ss_dssp TTSSEEEE
T ss_pred CCCCEEEE
Confidence 66554443
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.27 E-value=9e-09 Score=82.89 Aligned_cols=251 Identities=14% Similarity=0.202 Sum_probs=137.5
Q ss_pred EEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 66 ~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
++.+++|+.||.-- |..|.|=...+.-.. -...+. +.......-+.++| |||+.+||.+.
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~s-i~~kcq-----------VpkD~~PQWRkl~W-------SpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSS-IIGKCQ-----------VPKDPNPQWRKLAW-------SPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchh-eeEEEe-----------cCCCCCchheEEEE-------CCCCcEEEEEc
Confidence 56788998888644 556766554432100 000000 11111124567889 88999999999
Q ss_pred CCCcEEEEeccCCceeeeeeccc-cc-ccccceEEEEECCCC-------cEEEEEcCCeEEEEEcCCC-CCccccccccc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYD-AV-DEITAAFSVAFNPTG-------TKIFAGYNKSVRVFDVHRP-GRDFEKYSTLK 215 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~-------~~l~~~~d~~i~v~d~~~~-~~~~~~~~~~~ 215 (430)
..|+|+++|+..... ..+.... .. .-...|..+.|.+-. ++|+...+|.++-|-+..+ .........+.
T Consensus 63 S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 63 STGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred CCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 999999999976433 3333221 11 112356677775532 5666788888888877431 11111111111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEE--EEEecCCCe----
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL--YTGGRKDPY---- 289 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l--~~~~~~d~~---- 289 (430)
. .......|.++.++| +.++|++|+.... .++. -.+....+++=..-.+..+. ++.. .|+.
T Consensus 142 f-~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~-~~~~~~~~ 208 (282)
T PF15492_consen 142 F-SSHYPHGINSAVYHP-KHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSS-EDDITASS 208 (282)
T ss_pred e-cccCCCceeEEEEcC-CCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEcccc-Cccccccc
Confidence 0 123356799999999 5556666654322 0000 00112223332222121111 1111 1211
Q ss_pred --EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 290 --ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 290 --i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
..+|.+-+.. ...........|..+..||||..||+...+|.|.+|++.+-++...+..++
T Consensus 209 ~~~~~~~~~~~~----~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 209 KRRGLLRIPSFK----FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred cccceeecccee----eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 1233322210 111113456789999999999999999999999999999888777666444
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=7.2e-09 Score=82.24 Aligned_cols=245 Identities=13% Similarity=0.089 Sum_probs=152.7
Q ss_pred eEEEECc-----CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 64 KGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 64 ~~~~~sp-----~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
+.+.|.| ...+||.||..|...+|...+.+........ +...| ...... -...
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~----------------snn~v---~~~~r~---cd~~ 128 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV----------------SNNDV---TLVKRY---CDLK 128 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecc----------------cccch---hhhhhh---cccc
Confidence 4566766 2348999999999999998865432211110 00111 000000 0011
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
..+..++.|.++++.+++.+......-.... .+.++++++++++++ +|....|..|.++..+...... .
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~ 198 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----Y 198 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----E
Confidence 2466778888888888876544333222211 477999999999999 6788999999998755433221 1
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee-----EEeeccccCeEEEEEccCCC--EEEEEecCCCeE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-----YVLHGQEGGVTHVQFSRDGN--YLYTGGRKDPYI 290 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~--~l~~~~~~d~~i 290 (430)
.......-.+..|+. ....+|++..||++.|||++..... ..-..|.+.+..+.|++.|. +|+.+- .-+.+
T Consensus 199 ~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~ 276 (344)
T KOG4532|consen 199 EAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRV 276 (344)
T ss_pred ecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceE
Confidence 122233446778888 6679999999999999999875432 22235889999999998664 344444 67899
Q ss_pred EEEeCCCCceEEEEeecc---cCC-ccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRS---SEH-TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~---~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.+.|+++........... ..| ...+....|+.++..+.+.+++ .+.=|++.+
T Consensus 277 hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 277 HVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 999999886543332111 112 2336667777777666666554 244555543
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=2.1e-09 Score=86.34 Aligned_cols=252 Identities=17% Similarity=0.170 Sum_probs=155.9
Q ss_pred ceeEEEECc---CCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 62 FLKGIKWSP---DGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 62 ~v~~~~~sp---~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.+..+.|.- +|. .|+-+-.+|.|.++..........+.... ...+.. ..-.++.| ++.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls----------~~ki~~-~~~lslD~-------~~~ 132 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS----------SKKISV-VEALSLDI-------STS 132 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc----------hhhhhh-eeeeEEEe-------ecc
Confidence 355566643 444 45566667788887665332111111100 000000 02345556 667
Q ss_pred CceEEEEeCCCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+..++++..+|.+.+-+........ .++.|.. +++...|+....-++ + |.|+.+..||++.++. -
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~------~ 201 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT------F 201 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccce-----eeeeeecccCCCceEEecCCCceEEEEEecCCcc------e
Confidence 7789999999999966655543333 5666554 888888887665444 5 4899999999985432 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYIL 291 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~ 291 (430)
+......|...|.++.-+|..+..+++|+.|-.|++||.+. ++++..-. -.+.|..+.++|.-. .+++++ +-.-.+
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~k 279 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAK 279 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHH-HhcCce
Confidence 22223567788999999998899999999999999999995 45655444 458899999999643 334444 555567
Q ss_pred EEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEE-EEEcCCC
Q 014125 292 CWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVH-IYDLQTG 344 (430)
Q Consensus 292 i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-vwd~~~~ 344 (430)
|-+....... ...+.....|.+-...-.|......|++++ .|+.++ +|-.-++
T Consensus 280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 7776654332 112233355666666666644445677754 455544 6644443
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.4e-08 Score=89.00 Aligned_cols=207 Identities=11% Similarity=0.063 Sum_probs=122.8
Q ss_pred eeeeeeeccccCccCCCCce-EEEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E-c--
Q 014125 121 SVYDFCWFPHMSASDPTSCV-FASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-Y-- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~-- 192 (430)
......| +|||+. ++..+. +..|.++|+.+++....... .. ......|+|||+.++. . .
T Consensus 189 ~~~~p~w-------SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g-----~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 189 LNIFPKW-------ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG-----MLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred CeEeEEE-------CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC-----cEEeeEECCCCCEEEEEEccCC
Confidence 6667788 778874 554433 35699999988876554432 21 3456789999988873 2 2
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEeeccccCeEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+..|.++|+..+. .. .+ ..+........|+|++..++++....+ .|++.|+.+++..+.... +. ..
T Consensus 256 ~~~Iy~~dl~~g~--~~---~L----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~ 323 (419)
T PRK04043 256 QPDIYLYDTNTKT--LT---QI----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NN 323 (419)
T ss_pred CcEEEEEECCCCc--EE---Ec----ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cC
Confidence 3567777875532 11 11 111112334579997776666665554 577778887765433321 11 23
Q ss_pred EEEccCCCEEEEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-C--cEEEE
Q 014125 271 VQFSRDGNYLYTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-G--LVHIY 339 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vw 339 (430)
..|+|+|+.|+...... ..|.+.|+.++... .+.. . .......|+|||+.|+..+.+ + .+.+.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 48999999988877332 36888888776432 2221 1 122358899999987766543 2 36677
Q ss_pred EcCCCCeecccccccCCeeE
Q 014125 340 DLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~ 359 (430)
+++. .....+....+.+..
T Consensus 398 ~l~g-~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 398 RLNY-NKSFLFPLKVGKIQS 416 (419)
T ss_pred ecCC-CeeEEeecCCCccCC
Confidence 7754 333334333333433
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.3e-09 Score=95.42 Aligned_cols=252 Identities=12% Similarity=0.129 Sum_probs=159.1
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
-+++.||++.|.-+.|+...+.|-|...+|.|.||-+-.++...+ ...-...+.|.+++|
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE---------------MiNnRnKSvV~SmsW----- 123 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE---------------MINNRNKSVVVSMSW----- 123 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHH---------------HhhCcCccEEEEEEE-----
Confidence 358899999999999999999999999999999999876654322 222223467999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCc-cc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD-FE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~-~~ 209 (430)
+.+|..+...-.||.|.+=.++..+.-. .+++. ....+.|++|.+.++.+ ..|.+.+||....-.. ++
T Consensus 124 --n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~-------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~ 194 (1189)
T KOG2041|consen 124 --NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ-------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLE 194 (1189)
T ss_pred --cCCCcEEEEEEccCCEEEEeeccceecchhcchh-------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhh
Confidence 7789999988899988776665433211 11111 33478899999888755 7899999997642110 00
Q ss_pred --ccccccCCCCCCCcceEEEEEc-------CCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCE
Q 014125 210 --KYSTLKGNKEGQAGIMSAIAFS-------PTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 210 --~~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
...............+..+.|. |.+...|+++..+|.+.+-.-.+. .++ .+. ..-.+..+.|+++|..
T Consensus 195 ~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~d-tgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 195 KDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVD-TGMKIVGAKWNHNGAV 272 (1189)
T ss_pred hceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEe-cccEeecceecCCCcE
Confidence 0000011111112224555553 225668999999999888654333 333 333 2367899999999999
Q ss_pred EEEEecCCC---------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 280 LYTGGRKDP---------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 280 l~~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
|+++| .+. .|.+|..-.. .. .........|++++|-..|-.++.+ -|+.|++-+++
T Consensus 273 LAvcG-~~~da~~~~d~n~v~Fysp~G~--i~---gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 273 LAVCG-NDSDADEPTDSNKVHFYSPYGH--IV---GTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred EEEcc-CcccccCccccceEEEeccchh--he---EEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 99988 442 3444432211 11 1113455678888887766555544 24444444443
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=2.4e-09 Score=86.73 Aligned_cols=255 Identities=12% Similarity=0.147 Sum_probs=164.1
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----eeeeeecccc-------cccccceEEEEECCCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDA-------VDEITAAFSVAFNPTG 185 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~-------~~~~~~v~~~~~~~~~ 185 (430)
....|+++.| ...|.+|++|...|.|.++.-+... ....++.|.. .+-...|..+.|-.++
T Consensus 25 ead~ItaVef-------d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 25 EADKITAVEF-------DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred ccceeeEEEe-------ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence 3467888888 6678999999999999999865432 1222333321 1112357778876554
Q ss_pred ---cEEEEEcCCeEEEEEcCCCCC------------------ccccccc-----------------ccCCCCCCCcceEE
Q 014125 186 ---TKIFAGYNKSVRVFDVHRPGR------------------DFEKYST-----------------LKGNKEGQAGIMSA 227 (430)
Q Consensus 186 ---~~l~~~~d~~i~v~d~~~~~~------------------~~~~~~~-----------------~~~~~~~~~~~v~~ 227 (430)
.+|+++.|.+|++|.+..... +...... .+.....|...+.+
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 466788999999999875411 1100000 01122467778899
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeeccc-----cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQE-----GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
+.|+. +...++ .+.|-.|.+|++.-.. .+..++.|. .-|++..|+|....++.-++..|.|++-|++...
T Consensus 178 iS~Ns-D~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISFNS-DKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecC-chheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99988 444444 4457889999876432 122333443 3588999999654433333379999999998432
Q ss_pred eEEE--Eee----------cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeeccccccc------------
Q 014125 300 QVVY--KLY----------RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAA------------ 354 (430)
Q Consensus 300 ~~~~--~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~------------ 354 (430)
.... .++ -..+-...|..+.|+++|+++++-+. -+|++||++. ..+++++..|.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 1100 000 01123456888999999999998765 4799999985 45566665443
Q ss_pred CCe---eEEEEcCCCcEEEEeeCCceeeecC
Q 014125 355 DTV---NGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 355 ~~v---~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
+.| ..+.|+.+.+.+.+|+..+.+-++-
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeec
Confidence 223 3578899999999999988888874
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=1.3e-07 Score=93.05 Aligned_cols=246 Identities=12% Similarity=0.170 Sum_probs=154.5
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEE----eccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW----DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY 192 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 192 (430)
....|.++.| -++...++.+..+|.|.+. +..+..... ...... .|.+++||||+..++ +..
T Consensus 74 ~~~~ivs~~y-------l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~-VG~vd~-----GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 74 PNDKIVSFQY-------LADSESLCIALASGDIILVREDPDPDEDEIEI-VGSVDS-----GILAASWSPDEELLALVTG 140 (928)
T ss_pred CCCcEEEEEe-------ccCCCcEEEEECCceEEEEEccCCCCCceeEE-EEEEcC-----cEEEEEECCCcCEEEEEeC
Confidence 3467888888 4567789999999999999 544443221 122222 899999999999998 557
Q ss_pred CCeEEEEEcCCC------------CC----------ccccc------------cccc------CCCCCCCcceEEEEEcC
Q 014125 193 NKSVRVFDVHRP------------GR----------DFEKY------------STLK------GNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 193 d~~i~v~d~~~~------------~~----------~~~~~------------~~~~------~~~~~~~~~v~~~~~~~ 232 (430)
+++|.+..-.-. +. .-..+ .... .... ....-..++|-.
T Consensus 141 ~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 141 EGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred CCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 778777643210 00 00000 0000 0011 233556789998
Q ss_pred CCCceEEEecC---C---CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEE
Q 014125 233 THTGMLAIGSY---S---QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 233 ~~~~~l~~~~~---d---g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~ 304 (430)
++.++|+.+. . ..+++|+-+ |.....-..-.+--.+++|-|.|++|++.-+. ...|.+|.-+..+.....
T Consensus 220 -DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~ 297 (928)
T PF04762_consen 220 -DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFT 297 (928)
T ss_pred -CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEe
Confidence 5567777664 2 579999876 65544444334444678999999999988732 356777775544332222
Q ss_pred eecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccccc-cCCeeEEEEcCCCc-EEEEeeCCceeee
Q 014125 305 LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQAA-ADTVNGFSFHPFLP-MAASSSGHRRFPV 380 (430)
Q Consensus 305 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~-~l~s~~~d~~~~v 380 (430)
+ ........+..+.|++++..||..-.|. |.+|-..+... .+.+... ...+..+.|+|... .|...+.++.+..
T Consensus 298 l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 298 L-RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred c-CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 2 2234566789999999999999987665 99999887654 2233322 23455699999655 4666665565554
Q ss_pred c
Q 014125 381 D 381 (430)
Q Consensus 381 w 381 (430)
+
T Consensus 376 ~ 376 (928)
T PF04762_consen 376 Y 376 (928)
T ss_pred E
Confidence 4
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.14 E-value=1.3e-09 Score=91.27 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=105.3
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
....+..++.+++++++ .+....+++.....+..+...... .......++.+..+. .....-..+....+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccc-eEEEEeecCCceeeeeeccc
Confidence 34456677888888865 556666777765433111111100 011112233333322 11111123333445555555
Q ss_pred CceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.+.. ..+-+|-.-++.++|+||+++|+++. .|..|++-........-.. ..+|..-|..++.-++ ..|++||.|
T Consensus 141 ~~~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~Iesf---clGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 141 SGRC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESF---CLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred ccCc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhh---ccccHhheeeeeeccC-ceeeecCCC
Confidence 4333 34457999999999999999999999 9999999776554222111 1579999999998774 569999999
Q ss_pred CcEEEEEcCCCCeecccc
Q 014125 334 GLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~ 351 (430)
++|++||+.+|+.+.++.
T Consensus 215 ~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcEEEEecccCCcccccc
Confidence 999999999999876554
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=2e-07 Score=75.26 Aligned_cols=231 Identities=12% Similarity=0.066 Sum_probs=126.3
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~ 211 (430)
+.+|++||.. .|..|.+-...+. ..+...+.+.. ....-..++|+||+.+|+.+ ..|+|++||+..... -.+
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD--~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~I 80 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKD--PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL--FVI 80 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCC--CCchheEEEECCCCcEEEEEcCCCeEEEEeccccee--EEc
Confidence 5677777665 4555666655443 22233333221 12256789999999999955 889999999864211 111
Q ss_pred ccccCCCCCCCcceEEEEEcCCC-----CceEEEecCCCeEEEEEcCCc-----eeeEEe--ec-cccCeEEEEEccCCC
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSYSQTSAIYREDNM-----ELLYVL--HG-QEGGVTHVQFSRDGN 278 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~~~d~~~~-----~~~~~~--~~-~~~~i~~~~~~~~~~ 278 (430)
.........-...|..+.|.+.. ...|++-..+|.++-|-+..+ +....+ .. +...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 11111111223567777775532 335666677888877765321 222222 22 356899999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE--EEEEccCCc------EEEEEcCCCCeeccc
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH--LGTGGQDGL------VHIYDLQTGKWISGF 350 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~------i~vwd~~~~~~~~~~ 350 (430)
.|+++|.....-..+ ......+++-..-.+..+ .++..+|+. -.+|.+-+.+.....
T Consensus 161 LLlVgG~~~~~~~~s---------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMS---------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred EEEEeccCCCCCccc---------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 999888444321000 111222222222211111 112222221 234444433332222
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
....+.|..|..+|||.+||+...+|.+.+|+...
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 33566899999999999999998766666665544
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.4e-08 Score=83.92 Aligned_cols=239 Identities=18% Similarity=0.190 Sum_probs=136.3
Q ss_pred eeecCCCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
+...++..|.+++|+| ..+ ++..++.+..|+|.|+++...+..+..+. .+++++|.-+....+ +|
T Consensus 188 ~lp~~g~~IrdlafSp-------~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSP-------FNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cccccchhhhhhccCc-------cccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEe
Confidence 4556677899999954 444 78889999999999999998888887764 899999998876555 88
Q ss_pred -cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC-----CCceEEEecCCCeEEEEEcC--CceeeEEee-
Q 014125 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-----HTGMLAIGSYSQTSAIYRED--NMELLYVLH- 262 (430)
Q Consensus 192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~v~~~d~~--~~~~~~~~~- 262 (430)
.+|.|.+||++.+...+.....- ....+|..++.-+. .+.+++....+ ...|... .+.....+.
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~-----~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVAN-----VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhh-----hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 89999999999876544322110 11223443333221 23344444433 2233322 222222222
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCe------EEE-EeCCCCceEEEEeecc-cCCccce---EEEEEcCCCCEEE-EE
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPY------ILC-WDLRKAVQVVYKLYRS-SEHTNQR---ILFDIEPSGRHLG-TG 330 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~------i~i-~d~~~~~~~~~~~~~~-~~~~~~v---~~~~~~~~~~~l~-~~ 330 (430)
...+.+.++++.+..+.++.+.+.+.. +-. -|.+++..+....... .....++ ..+.-.++.++|+ +|
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 134567777777766777666533211 111 1122222221111100 0000000 0111234445544 55
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC--CcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF--LPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~ 373 (430)
+.-+.+.+||..+.+.++.+... .+|.++..... +.+|++-.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT 451 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT 451 (463)
T ss_pred CCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee
Confidence 55678999999999999998844 78888766532 33555554
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.09 E-value=3.3e-08 Score=78.61 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=120.8
Q ss_pred cEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc
Q 014125 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (430)
Q Consensus 186 ~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 264 (430)
.+|+ .|..|...+|...+........ ..+...|+-+.=.-+...-+..++.|.++++.++.-+.........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 4566 4588999999987643322211 1111111111111112334667788888888887644332222111
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
.-.+.+++++++++++++.+ ....|..|.+............ ......-.+..|+.....+|++..||++.|||++..
T Consensus 158 ~~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccceeeeEEcCCCceEEEec-CCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 12378999999999999999 8899999999876554434222 333444567889999999999999999999999864
Q ss_pred Cee-----cccccccCCeeEEEEcCCCc--EEEEeeCCceeeecCC
Q 014125 345 KWI-----SGFQAAADTVNGFSFHPFLP--MAASSSGHRRFPVDDF 383 (430)
Q Consensus 345 ~~~-----~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~~~vw~~ 383 (430)
... .+-..|.+.++.+.|++.|. +|+..-.-+.+.|-|.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 322 23345889999999998665 4555444444444443
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1.4e-07 Score=85.05 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=113.4
Q ss_pred ceeEEEECcCCce-EEEecCC---CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 62 FLKGIKWSPDGSS-FLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 62 ~v~~~~~sp~~~~-l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.+....|||||+. ++..+.+ ..|.++|+.+++.. ......+......| +||
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~------------------~lt~~~g~~~~~~~-------SPD 243 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE------------------KIASSQGMLVVSDV-------SKD 243 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE------------------EEecCCCcEEeeEE-------CCC
Confidence 6778999999984 6644433 46888888765321 11112234455667 788
Q ss_pred CceEEE-EeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCCCCcccc
Q 014125 138 SCVFAS-TTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~-~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~v~d~~~~~~~~~~ 210 (430)
|+.++. .+.+ ..|.++++.+++.... ..... ......|+|||+.|+ ++ ..+ .|.+.|+..+.. +
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~L-T~~~~-----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~- 314 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQI-TNYPG-----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--E- 314 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEc-ccCCC-----ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--E-
Confidence 976654 3334 4688888877764433 22221 122457999999888 44 333 577777765322 1
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.+. ..+.. ...|+|++..++++.... ..|.+.|+.++... .+... .......|+|||+.|+.
T Consensus 315 --rlt--~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 315 --QVV--FHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMF 384 (419)
T ss_pred --eCc--cCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEE
Confidence 111 11111 238999766666655443 36888898877643 33322 23346899999998877
Q ss_pred EecCCC--eEEEEeCCCC
Q 014125 283 GGRKDP--YILCWDLRKA 298 (430)
Q Consensus 283 ~~~~d~--~i~i~d~~~~ 298 (430)
.....+ .+.+.++...
T Consensus 385 ~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 385 IKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEccCCcEEEEEEecCCC
Confidence 663333 3556666554
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=3.5e-07 Score=76.90 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=119.1
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
++..+++++.++.+..||..+|+.+..+........ .....++..++...++.|+.+|..++...+........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~------~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG------APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS------GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc------eeeecccccccccceeeeEecccCCcceeeeecccccc
Confidence 466788888999999999999999888876432111 12333555555667889999998876554431111100
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC----------eEEEEEccCCCEEEEEecC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG----------VTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~~ 286 (430)
... ........+ .+..++++..++.|..+|.++|+.+......... +..-....++ .++.+. .
T Consensus 109 ~~~--~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~ 181 (238)
T PF13360_consen 109 PAG--VRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-G 181 (238)
T ss_dssp TCS--TB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-C
T ss_pred ccc--cccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-C
Confidence 000 111112222 2447788888999999999999998777653322 1222222344 677776 6
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
++.+..+|+.++.... .. . ...+.. ...+++..|+.++.++.|..||+++|+.+.
T Consensus 182 ~g~~~~~d~~tg~~~w-~~---~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 182 DGRVVAVDLATGEKLW-SK---P--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TSSEEEEETTTTEEEE-EE---C--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCCEEE-Ee---c--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 7754444999986442 21 1 111222 134667888888899999999999998764
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=6.3e-09 Score=87.28 Aligned_cols=159 Identities=13% Similarity=0.157 Sum_probs=107.3
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEEEccCCCEEEEEe--cCCCeEEEEeCCCCce
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLYTGG--RKDPYILCWDLRKAVQ 300 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~d~~i~i~d~~~~~~ 300 (430)
.+..+| ++.++|++..+....+++.+.... ..... -...-+++.|..+.....++. +....+.+|....+
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc--
Confidence 344555 778889888888877777665432 22221 222345556655555555544 13344455554432
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-ccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-QAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
......+|-+.++.++|+||+++|+++..|..|+|-.+.....+..+ -||..-|..++.-++.. |+++|
T Consensus 143 ---~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~s------ 212 (390)
T KOG3914|consen 143 ---RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGS------ 212 (390)
T ss_pred ---CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecC------
Confidence 12233689999999999999999999999999999888866666655 46999999999886544 55554
Q ss_pred ecCCCccccccCCCcEEEEeecccccccccC
Q 014125 380 VDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 380 vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
.|+++++||+..++.+..+.
T Consensus 213 -----------GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 -----------GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -----------CCCcEEEEecccCCcccccc
Confidence 57888888888888775443
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=9.5e-08 Score=87.07 Aligned_cols=244 Identities=12% Similarity=0.119 Sum_probs=161.8
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc---cCCC--
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA---SDPT-- 137 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~-- 137 (430)
-.++.|+|.| +||-|+.. .|.+-|..+-+....+. .|...|..+.|.|.... ++|.
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie-----------------~h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIE-----------------LHQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccc-----------------cCccceeEEEeccCCCchhccCcccc
Confidence 5688999977 88888765 67888876654433222 34478999999885432 2332
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC---C-cEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---G-TKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.-+||++...|.|.+||...+..+..+..+.. ++..++|-+. . .+++ ......|.+|+..+++..++.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-----~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-- 151 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSND-----SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-- 151 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCc-----chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--
Confidence 34677888889999999999888888877665 7777887653 3 2333 457889999999887554432
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-------ceeeEEeecccc-------------------
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-------MELLYVLHGQEG------------------- 266 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-------~~~~~~~~~~~~------------------- 266 (430)
........|+.+.|.+.+.+..-+..|.|.+-+.-. ++..+.-..|..
T Consensus 152 ------~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~ 225 (1062)
T KOG1912|consen 152 ------DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPA 225 (1062)
T ss_pred ------ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCc
Confidence 122345778999998888888877788877765321 122222222211
Q ss_pred ------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEEE
Q 014125 267 ------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVHI 338 (430)
Q Consensus 267 ------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~v 338 (430)
....++|+|.-+.++-.. ....+.++|++-....... .-..+.+.-+.+-|++ ..|++.-.||.+.+
T Consensus 226 sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vv----pier~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 226 SAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVV----PIERGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred chhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEE----EeccCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 012366788766555555 6888999999866443222 1233444456666665 57999999999999
Q ss_pred EEcCC
Q 014125 339 YDLQT 343 (430)
Q Consensus 339 wd~~~ 343 (430)
|-.+.
T Consensus 301 rvrk~ 305 (1062)
T KOG1912|consen 301 RVRKE 305 (1062)
T ss_pred EEeec
Confidence 97653
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.9e-09 Score=94.09 Aligned_cols=242 Identities=15% Similarity=0.189 Sum_probs=154.0
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCCc
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTGT 186 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (430)
...+|...|+.++- -.+.+-+++++.|.+|++|.++.. .+..+++.|.. +|.++.|-.+.+
T Consensus 730 nf~GH~~~iRai~A-------idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----~i~~igfL~~lr 797 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAA-------IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----PIHDIGFLADLR 797 (1034)
T ss_pred cccCcHHHhHHHHh-------cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----cccceeeeeccc
Confidence 34567777777664 335677999999999999998642 24444554444 888999988877
Q ss_pred EEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEee---
Q 014125 187 KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLH--- 262 (430)
Q Consensus 187 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~--- 262 (430)
+++ +.|+.|.+||.-.+.. +.. .......+..+.|.++.-- +..+++.| +...+|+++|.+..+....++
T Consensus 798 ~i~-ScD~giHlWDPFigr~-Laq--~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 798 SIA-SCDGGIHLWDPFIGRL-LAQ--MEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred eee-eccCcceeecccccch-hHh--hhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEecc
Confidence 665 4588999999754211 110 1111112222333333211 33344444 788999999999887655554
Q ss_pred --ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE-E
Q 014125 263 --GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI-Y 339 (430)
Q Consensus 263 --~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v-w 339 (430)
+...-+.+++..+.|+.++++- ..|+|.+.|.+++... ... .........++ .|..+.|+....|.++.| |
T Consensus 872 a~~Pna~~R~iaVa~~GN~lAa~L-SnGci~~LDaR~G~vI-Nsw---rpmecdllqla-apsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADKGNKLAAAL-SNGCIAILDARNGKVI-NSW---RPMECDLLQLA-APSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred CCCCchheeEEEeccCcchhhHHh-cCCcEEEEecCCCcee-ccC---Ccccchhhhhc-CchhHHHHhhcccceeEeee
Confidence 3345688999999999999998 8999999999998422 111 22223333333 466677888888888888 8
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
...++......+....+..- ...-|+-|+++.....+.||
T Consensus 946 haldgimh~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 946 HALDGIMHLQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhcCCeeeeccCCCCcchhh--hhccCceeEEeccCcEEEEE
Confidence 87777655544432222110 12246677777766667776
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.7e-08 Score=84.73 Aligned_cols=258 Identities=12% Similarity=0.055 Sum_probs=167.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.-|++.|+.+.-+. .+++.+++.||.++.|.-..-.-. ........|-..+.+++- +-
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGv--------------EfVKhFraHL~~I~sl~~-------S~ 63 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGV--------------EFVKHFRAHLGVILSLAV-------SY 63 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccce--------------eehhhhHHHHHHHHhhhc-------cc
Confidence 45888888887664 579999999999999965421000 000111223344555544 66
Q ss_pred CCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEEEEE--cCCeEEEEEcCCCCCccccc
Q 014125 137 TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG--YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 137 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~--~d~~i~v~d~~~~~~~~~~~ 211 (430)
++.++.+.+. |..++++|+++-..+.-++...-. ...++..++.. ..++++ .++.+.++|-.....+
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP----g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q---- 135 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP----GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ---- 135 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCC----CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc----
Confidence 8889999777 999999999876655444433221 11122222221 244544 6899999997654321
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC------ceeeEE---------eeccccCeEEEEEccC
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MELLYV---------LHGQEGGVTHVQFSRD 276 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~------~~~~~~---------~~~~~~~i~~~~~~~~ 276 (430)
......-|..+|.++.++| -...+++....|.|.-|.... .+.... +........++.|+|+
T Consensus 136 --~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 136 --DGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred --cceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 2222356778999999999 666888888899999998762 111111 1223456789999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEE-------------ee---------------cccCC-ccceEEEEEcCCCCEE
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYK-------------LY---------------RSSEH-TNQRILFDIEPSGRHL 327 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~-------------~~---------------~~~~~-~~~v~~~~~~~~~~~l 327 (430)
+..+.+.+ .|..|++++.++++..... .. ....+ ...-+.+.|...|++|
T Consensus 213 g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fl 291 (558)
T KOG0882|consen 213 GAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFL 291 (558)
T ss_pred cCcccccC-cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEE
Confidence 99999999 9999999998876421100 00 00011 2233567888899999
Q ss_pred EEEccCCcEEEEEcCCCCeecc
Q 014125 328 GTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
+.|+-=| |+|.++.+++.++.
T Consensus 292 ly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 292 LYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred Eeeccee-EEEEEeecCeEEEE
Confidence 9998876 89999988766544
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.02 E-value=9e-07 Score=73.88 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=152.3
Q ss_pred eEEEECc-CCceEEEecCCCe-EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 64 KGIKWSP-DGSSFLTSSEDKT-LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 64 ~~~~~sp-~~~~l~s~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
..++.+| .+..++.+-.-|+ ..+||..+++....+... ....+.+|+ +| |+||++|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~---------~gRHFyGHg------~f-------s~dG~~L 65 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP---------PGRHFYGHG------VF-------SPDGRLL 65 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC---------CCCEEecCE------EE-------cCCCCEE
Confidence 4678888 5667777777665 778999887654322211 112233332 23 8899999
Q ss_pred EEEeC-----CCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 142 ASTTR-----DHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 142 ~~~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++.-. .|.|-|||.. +-+.+.++..+.- ....+.+.||++.|+++..|-- +
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~------T------------ 122 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIE------T------------ 122 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCc------c------------
Confidence 98744 4789999998 5566667766654 4456889999988887654421 1
Q ss_pred CCCCCCCcceEEEEEcCC-CCceEEEecCCCeEEEEEcCCceeeEE--e--eccccCeEEEEEccCCCEEEEEecCCC--
Q 014125 216 GNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYV--L--HGQEGGVTHVQFSRDGNYLYTGGRKDP-- 288 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~~d~-- 288 (430)
+|+ +...|-..+.+.++...|..+++.+.. + ..|...|..+++.++|..++..- ..|
T Consensus 123 ---------------hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q-~qg~~ 186 (305)
T PF07433_consen 123 ---------------HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ-YQGDP 186 (305)
T ss_pred ---------------CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe-cCCCC
Confidence 010 111222233445555666677776655 3 33677899999999987655443 333
Q ss_pred -----eEEEEeCCCCceEEEE-eecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeEEE
Q 014125 289 -----YILCWDLRKAVQVVYK-LYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNGFS 361 (430)
Q Consensus 289 -----~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 361 (430)
-|-+++.......... ......-.+.+-++++++++.++++.+ ..|.+.+||..+++.+....-. .+..++
T Consensus 187 ~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva 264 (305)
T PF07433_consen 187 GDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVA 264 (305)
T ss_pred CccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeee
Confidence 2334433322111000 000123457888999999998876555 5678999999999988766533 466777
Q ss_pred EcCCCcEEEEee
Q 014125 362 FHPFLPMAASSS 373 (430)
Q Consensus 362 ~~~~~~~l~s~~ 373 (430)
-.+++ ++++++
T Consensus 265 ~~~~~-f~~ssG 275 (305)
T PF07433_consen 265 PTDDG-FLVSSG 275 (305)
T ss_pred ecCCc-eEEeCC
Confidence 77766 555554
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=8.9e-09 Score=81.35 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=70.3
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS- 323 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 323 (430)
+..+.|+++..+.+..-......|++++-+|..+.+++++..||.+.+||+++...+. .....|..+++.+-|+|.
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~---S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV---SLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH---HHHHHhhhhhhheeccCCC
Confidence 3455566654433222222233599999999887777666699999999999874333 223678999999999995
Q ss_pred CCEEEEEccCCcEEEEEcCC
Q 014125 324 GRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~ 343 (430)
+..|+++++||.+..||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 57899999999999999874
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=1.3e-09 Score=62.15 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=35.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEe
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~ 88 (430)
+.+++.+|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999999999999999999997
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3e-09 Score=87.36 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=113.7
Q ss_pred CcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-----eeeE
Q 014125 185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----ELLY 259 (430)
Q Consensus 185 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----~~~~ 259 (430)
+..+++|.+-.|-+-++.++-. ..+ ...+.|.++.|.. ..+++..|..+|.|..+|++.. .+..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~---------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQ---------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred eeeecccccceeEEEEeecccc---------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 4445577888888888876422 111 2345678888887 6789999999999999999875 3444
Q ss_pred EeeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceE--EEEEcCCCCEEEEEccCCcE
Q 014125 260 VLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI--LFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i 336 (430)
.+- |...|+++..-. ++++|++++ .+|+|++||++..+... ....-.+|.+.-. -+-..+....+++++.|...
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASD-MTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeecc-CcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEE
Confidence 554 889999998776 788888888 99999999999765421 1122234543322 23445667889999999999
Q ss_pred EEEEcCCCCeecccccc
Q 014125 337 HIYDLQTGKWISGFQAA 353 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~ 353 (430)
+||.++.+.++.+++..
T Consensus 371 RiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEecccCceeeccCCC
Confidence 99999999998888744
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=1.2e-06 Score=79.33 Aligned_cols=274 Identities=9% Similarity=0.048 Sum_probs=150.7
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.+..+++++.+|.+.-+|..+++..-....... ...........+ .-.| .-++..++.++.+|.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-------~~~~~~~~~~~~---~~~~-----~v~~~~v~v~~~~g~l 132 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEK-------DGWFSKNKSALL---SGGV-----TVAGGKVYIGSEKGQV 132 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCc-------cccccccccccc---cccc-----EEECCEEEEEcCCCEE
Confidence 356777788888999999888765432221110 000000000000 0000 1134567788899999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIA 229 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 229 (430)
..+|..+|+.+...+.... +.+--.-.++..++...++.|..+|..++...+........ ...+...++
T Consensus 133 ~ald~~tG~~~W~~~~~~~------~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~---- 202 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAGE------ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA---- 202 (394)
T ss_pred EEEECCCCCCcccccCCCc------eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----
Confidence 9999999998887765432 11111111455555567889999999876554432211000 000111111
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc-------CeEEEEEcc--CCCEEEEEecCCCeEEEEeCCCCce
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-------GVTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
.. + ..++.++.+|.+..+|..+++.+........ ....+.-+| .+..+++++ .+|.+..+|..+++.
T Consensus 203 v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~ 278 (394)
T PRK11138 203 TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQI 278 (394)
T ss_pred EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCE
Confidence 11 2 2567778899999999998887655431110 011111222 345677777 799999999998865
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCCceee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
...... .. ...+.. .+..|+.++.+|.+..+|..+++.+........ ...+... .+.+|+.++.+|.+.
T Consensus 279 ~W~~~~---~~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 279 VWKREY---GS---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLH 348 (394)
T ss_pred EEeecC---CC---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEE
Confidence 543221 11 111222 356788888999999999999987654432111 1111122 245666677677666
Q ss_pred ecCC
Q 014125 380 VDDF 383 (430)
Q Consensus 380 vw~~ 383 (430)
+.|.
T Consensus 349 ~ld~ 352 (394)
T PRK11138 349 WINR 352 (394)
T ss_pred EEEC
Confidence 6543
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=7.1e-08 Score=76.40 Aligned_cols=166 Identities=9% Similarity=0.011 Sum_probs=98.7
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
+.+.-|.++-.+-+.+-.++-++++..||.+.+.+.+.... +.... ..... .-.+.+.
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~---~~~~i---------~~~~~----~~as~~~------ 140 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA---LMSRI---------PSIHS----GSASRKI------ 140 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHh---hhhhc---------ccccc----cccccce------
Confidence 34445555444444555677899999999999998864211 10000 00000 0000000
Q ss_pred cCCCCceEEEE-----eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCC
Q 014125 134 SDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 134 ~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~ 206 (430)
-..++.+.++ ..-+..+.|++...+....... ....|.+++-+|..+.++ +| .||.+.+||.+....
T Consensus 141 -~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-----~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~ 214 (319)
T KOG4714|consen 141 -CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-----ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM 214 (319)
T ss_pred -eecccEEecCCcceEeeccceeeeccccccccccccc-----ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc
Confidence 0012222222 1123355555543322211111 112588899999887766 55 899999999987522
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
+...+..|+.++..+-|+|.++..|+++++||.+..||..+
T Consensus 215 -------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 215 -------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22234678889999999999999999999999999999875
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=3.5e-06 Score=76.37 Aligned_cols=268 Identities=11% Similarity=0.109 Sum_probs=147.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..++.++.+|.+.-+|.++++..-..... ..+.+ .|. -.+..++.+..+|.+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------~~~~s---sP~-----v~~~~v~v~~~~g~l~ 173 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA------------------GEALS---RPV-----VSDGLVLVHTSNGMLQ 173 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC------------------Cceec---CCE-----EECCEEEEECCCCEEE
Confidence 345667778899999999888654332211 11110 010 0234567788899999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCC-cceEEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAF 230 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 230 (430)
.+|..+|+.+................+-... ++..++++.++.+..+|..++...+..... ....... .....+..
T Consensus 174 ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~--~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 174 ALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRIS--QPTGATEIDRLVDVDT 250 (394)
T ss_pred EEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccc--cCCCccchhcccccCC
Confidence 9999999988877643210000000011111 344555667888988888775443321100 0000000 00000111
Q ss_pred cCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 231 SPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 231 ~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
+|- .+..+++++.+|.+..+|..+++.+..... .....+. ..+..+++++ .+|.+..+|..++........ .
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~--~ 323 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRGGVELWSQSD--L 323 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCCCcEEEcccc--c
Confidence 110 123566677899999999999987765432 1112222 2456788888 899999999988864432111 0
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeE-EEEcCCCcEEEEeeCCceeee
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG-FSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~~~v 380 (430)
. .....+... .+.+|+.++.+|.|++.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.+..
T Consensus 324 ~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 324 L-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred C-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 1 111111122 2567888999999999999999988776543332221 122 2345666665555443
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=3e-09 Score=97.93 Aligned_cols=232 Identities=13% Similarity=0.140 Sum_probs=152.8
Q ss_pred CCcceeeecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee
Q 014125 43 PHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 122 (430)
..-.+..|+..++++.|+...+|++|+-+.+.|+.|+..|.|+++++.+|........ |+.+|
T Consensus 1084 r~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-----------------H~Sav 1146 (1516)
T KOG1832|consen 1084 RQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-----------------HQSAV 1146 (1516)
T ss_pred chhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-----------------ccccc
Confidence 3445667788899999999999999999999999999999999999998866544433 33566
Q ss_pred eeeeeccccCccCCCCceEEEEeCCC--cEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEE
Q 014125 123 YDFCWFPHMSASDPTSCVFASTTRDH--PIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198 (430)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v 198 (430)
+-+.= +.+|..+++.+.-. ...+|++.+ +.....+. .-.++.|+.....-+ +.......+
T Consensus 1147 T~veP-------s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---------ed~~vkFsn~~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1147 TLVEP-------SVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---------EDKAVKFSNSLQFRALGTEADDALL 1210 (1516)
T ss_pred ccccc-------cCCcceeeeeccccCchHHHhccccccCcccccc---------ccceeehhhhHHHHHhcccccceEE
Confidence 65543 66777776655433 578899864 33333333 334788876654444 345577899
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
||+.+.......+... .+....-++..|+|++ .+++ .|| .+||.+..+.++.|..... -..-.|+|+|.
T Consensus 1211 YDvqT~~~l~tylt~~----~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1211 YDVQTCSPLQTYLTDT----VTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGN 1279 (1516)
T ss_pred EecccCcHHHHhcCcc----hhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCc
Confidence 9998854432211111 1222233678899954 3444 244 4799998888877765442 23447999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
.++.-+ .|||+++..... . -..-.-..+.|+..|..+...
T Consensus 1280 eVIINS------EIwD~RTF~lLh-~-----VP~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1280 EVIINS------EIWDMRTFKLLH-S-----VPSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEeec------hhhhhHHHHHHh-c-----CccccceEEEeccCccchhhh
Confidence 988776 589999864221 1 112223457788777765533
No 306
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.1e-07 Score=78.41 Aligned_cols=260 Identities=17% Similarity=0.263 Sum_probs=156.9
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
-..||.|++|+|--..+ +|.||+..+..+... +.. .-..|....| +|.+++||.=
T Consensus 310 ~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl----------------ki~gIr~Fsw-------sP~~~llAYw 364 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL----------------KISGIRDFSW-------SPTSNLLAYW 364 (698)
T ss_pred eEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc----------------CCccccCccc-------CCCcceEEEE
Confidence 46899999999987775 789998875322111 110 1157888899 4556676654
Q ss_pred eCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC-----------CeEEEEEcCCCCCcc
Q 014125 145 TRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-----------KSVRVFDVHRPGRDF 208 (430)
Q Consensus 145 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-----------~~i~v~d~~~~~~~~ 208 (430)
... ..+.+..+.+++.++.-..++. .=..+.|-.+|.+|+.-.| ..+.|+.++...-+.
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnV-----sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNV-----SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceee-----eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 321 2466677777776666555432 2235678888888874211 246677776543332
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecC--CCeEEEEEcCC-c---eeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDN-M---ELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~~~d~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.. ..-...|...+|.|.+..+.+..+. ..++.+|...+ . +.+..+. ....+.+.|+|.|+++++
T Consensus 440 e~--------velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 440 EV--------VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVV 509 (698)
T ss_pred ee--------eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEE
Confidence 21 1223568899999955554444433 35788888773 2 2333443 245788999999999887
Q ss_pred Eec--CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------CcEEEEEcCCCCeeccccccc
Q 014125 283 GGR--KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------GLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 283 ~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~ 354 (430)
++- ..|.+.++|+....... .. .......+.+.|.|.|+|+++++.- .--++|+.. |++++.- --
T Consensus 510 a~l~s~~g~l~F~D~~~a~~k~---~~-~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq-Grll~~~--~i 582 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYADLKD---TA-SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ-GRLLKED--II 582 (698)
T ss_pred EEecccccceEEEecchhhhhh---cc-CccccccccceECCCCCEEEEeeehhhhccccceEEEEee-cHHHHHH--HH
Confidence 652 47899999987421111 11 1222345679999999999999863 335556555 2222110 01
Q ss_pred CCeeEEEEcCCCcEEEE
Q 014125 355 DTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s 371 (430)
+....+.|.|.-+.+++
T Consensus 583 ~~f~qF~WRPRPps~LS 599 (698)
T KOG2314|consen 583 DRFKQFLWRPRPPSLLS 599 (698)
T ss_pred HHHHhhccCCCCCcccC
Confidence 23345677776665554
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=1.4e-05 Score=67.33 Aligned_cols=221 Identities=17% Similarity=0.205 Sum_probs=132.8
Q ss_pred EEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 65 GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 65 ~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
++.|.+ ++.++++--..+.|..|+..++... ...... ...+++. .+++ .|+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------------~~~~~~-~~G~~~~------~~~g-~l~v 56 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------------VIDLPG-PNGMAFD------RPDG-RLYV 56 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------------EEESSS-EEEEEEE------CTTS-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------------EEecCC-CceEEEE------ccCC-EEEE
Confidence 578888 7778888778899999998765321 111112 3444442 1344 4555
Q ss_pred EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC---------CeEEEEEcCCCCCcccccccc
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN---------KSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d---------~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+...+ +.++|+.+++.................+.+++.|+|.+.++... +.|..++.. +. ... .
T Consensus 57 ~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~---~ 129 (246)
T PF08450_consen 57 ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTV---V 129 (246)
T ss_dssp EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEE---E
T ss_pred EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEE---E
Confidence 55555 66669998876555554222112347889999999997775421 446666654 11 111 1
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
...-.....++|+|++..++++-+..+.|..|++..... ...+....+..-.+++..+|+..++.. ..
T Consensus 130 ----~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~ 204 (246)
T PF08450_consen 130 ----ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GG 204 (246)
T ss_dssp ----EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TT
T ss_pred ----ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CC
Confidence 111234689999997666677888899999999863221 112222223478899999998766666 79
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEE
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGT 329 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 329 (430)
+.|.+++.+ +. ....+.. ....+++++|. ++.+.|+.
T Consensus 205 ~~I~~~~p~-G~-~~~~i~~---p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 205 GRIVVFDPD-GK-LLREIEL---PVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp TEEEEEETT-SC-EEEEEE----SSSSEEEEEEESTTSSEEEE
T ss_pred CEEEEECCC-cc-EEEEEcC---CCCCEEEEEEECCCCCEEEE
Confidence 999999988 43 3323321 23478899994 56555544
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=6.5e-06 Score=68.84 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=132.7
Q ss_pred ceEEEEECCCCc-EEEEE-c-CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-----cCCCe
Q 014125 175 AAFSVAFNPTGT-KIFAG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-----SYSQT 246 (430)
Q Consensus 175 ~v~~~~~~~~~~-~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~ 246 (430)
....++.+|... .++.+ . .....+||..++............++.+| -.|+|++. +|++. ...|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCcEE
Confidence 345688888554 44445 3 45688999987544322222222233333 58999554 55554 33588
Q ss_pred EEEEEcC-CceeeEEeeccccCeEEEEEccCCCEEEEEec-----------------CCCeEEEEeCCCCceEEEEeecc
Q 014125 247 SAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-----------------KDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 247 v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++.. ++..+...|..++..........
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999998 66778888877767788999999988777641 23345555666664332222222
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCc-------EEEEEcCCCCeeccc-------ccccCCeeEEEEcCCCcEEEEeeC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGL-------VHIYDLQTGKWISGF-------QAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..|...+..+++.++|..++..-..|. |-+++.. +.+..+ ..-.+-+-+|++++++.++++++-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 446778999999999887766554432 4444433 222222 234457899999999987766654
Q ss_pred CceeeecCCCccccccCCCcEEEEeecccccccccCCCCccee
Q 014125 375 HRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEF 417 (430)
Q Consensus 375 d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 417 (430)
..+++.+||..++.++....-...|.+
T Consensus 237 ----------------rGg~~~~~d~~tg~~~~~~~l~D~cGv 263 (305)
T PF07433_consen 237 ----------------RGGRVAVWDAATGRLLGSVPLPDACGV 263 (305)
T ss_pred ----------------CCCEEEEEECCCCCEeeccccCceeee
Confidence 235555565555555555544444443
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=4.3e-09 Score=86.47 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=96.9
Q ss_pred EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc----eEEEEeecccCCccc
Q 014125 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV----QVVYKLYRSSEHTNQ 314 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~ 314 (430)
++.+.+..|-+-|+.++... .+. ..+.|.++.|...++.++.|+ ..|.|..+|++... .....+ .|.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~Gc-RngeI~~iDLR~rnqG~~~~a~rl----yh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGC-RNGEIFVIDLRCRNQGNGWCAQRL----YHDSS 300 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecc-cCCcEEEEEeeecccCCCcceEEE----EcCcc
Confidence 44555777888888876433 333 467899999999899999999 99999999999762 222222 47788
Q ss_pred eEEEEEcC-CCCEEEEEccCCcEEEEEcCCCCe---ecccccccCCeeEEE--EcCCCcEEEEeeCCceeeec
Q 014125 315 RILFDIEP-SGRHLGTGGQDGLVHIYDLQTGKW---ISGFQAAADTVNGFS--FHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 315 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~l~s~~~d~~~~vw 381 (430)
|+++..-. ++++|++.+.+|.|++||++--+. +.++.+|-..-.-+- .++....+++++.|...+||
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 88877665 678999999999999999987666 778888865433332 34455566666544444444
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=2.9e-07 Score=85.50 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=123.2
Q ss_pred cEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 186 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
.++.+|....+..+|+++.... ....-..+.+.-|.. +++.+.+|...|+|.+-|.++.+.+.++.+|.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~--------r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKET--------RTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred ceeecchhhheeeeecccceee--------eeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 3444666777888888763221 111111223555555 56699999999999999999999999999999
Q ss_pred cCeEEEEEccCCCEEEEEec--------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcE
Q 014125 266 GGVTHVQFSRDGNYLYTGGR--------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLV 336 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 336 (430)
+.|..+.. .|+.|+++|- .|.-|++||+|..+... ++ .-+ ....-+.|+|. ...+++.+..|..
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI---~~~-~~P~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PI---QFP-YGPQFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC-Cc---ccc-cCchhhhhcccccceEEEEecccce
Confidence 99886655 7888888872 35678999999864332 11 111 11234677775 3568888889999
Q ss_pred EEEEcCCC-Ce---ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 337 HIYDLQTG-KW---ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 337 ~vwd~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+-|..+. .+ ++.+..-...+.++.+++++..++.+..+|.|.+|
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW 339 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence 99984321 22 22233334459999999999999999988888877
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=3.2e-08 Score=56.28 Aligned_cols=39 Identities=28% Similarity=0.610 Sum_probs=36.5
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
++++..+.+|.+.|++++|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 467889999999999999999999999999 999999997
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.77 E-value=7.1e-06 Score=79.12 Aligned_cols=265 Identities=10% Similarity=0.112 Sum_probs=151.0
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.|.++.|..+++.++.+..+|.|.+-|..+... .....-...|.+++| +||+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~------------------eivg~vd~GI~aasw-------S~Dee 122 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL------------------EIVGNVDNGISAASW-------SPDEE 122 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce------------------eeeeeccCceEEEee-------cCCCc
Confidence 36899999999999999999999999988775432 122223468999999 78999
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC--C
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG--N 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~ 217 (430)
.++..+..+++.+-.- +-.++.....+. .-.+.++++-+|....=.-+.-..+............ .
T Consensus 123 ~l~liT~~~tll~mT~-~f~~i~E~~L~~-----------d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 123 LLALITGRQTLLFMTK-DFEPIAEKPLDA-----------DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred EEEEEeCCcEEEEEec-cccchhcccccc-----------ccccccccceecccccceeeecchhhhccccccccccccc
Confidence 9999988887766442 222222222111 1122233333443221111111100000000000000 0
Q ss_pred CCCCCcceEEEEEcCCCCceEEEe-----cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCCeE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIG-----SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDPYI 290 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~-----~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i 290 (430)
.....+.=+++.|-- ++.++|+. .....|++||.+ +..-..-....+--.+++|-|.|..+++... .|+.|
T Consensus 191 ~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred chhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence 001112235688987 55577762 223789999987 4433333333444578999999999888652 45679
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE---EccCCcEEEEEcCCCCe--ecccccccCCeeEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT---GGQDGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~ 365 (430)
.+|.-+.-..-...+ ........+..++|+.++..|++ ......|++|-+.+... .+.+....... +.|+|.
T Consensus 269 vffErNGL~hg~f~l-~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 269 VFFERNGLRHGEFVL-PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred EEEecCCcccccccc-CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 998866543221111 11223334889999999999887 44555699999887543 22333222222 788884
Q ss_pred C
Q 014125 366 L 366 (430)
Q Consensus 366 ~ 366 (430)
.
T Consensus 346 ~ 346 (1265)
T KOG1920|consen 346 T 346 (1265)
T ss_pred C
Confidence 3
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=7.4e-06 Score=68.82 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=120.9
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
+|+|..||..+|+.+........ .....+.....++..++++.++.|..||..++...+... +.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~---~~~-- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG---IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPI---SGA-- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS---CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCG---GSG--
T ss_pred CCEEEEEECCCCCEEEEEECCCC---CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccc---cce--
Confidence 68899999999999888765221 112222233334555556699999999997754322211 11110 011
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccc---cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQE---GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
... .+..+++++.++.++.+|..+++.+... .... ...........+..++++. .++.|..+|++++....
T Consensus 72 -~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 72 -PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTGKLLW 146 (238)
T ss_dssp -EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTTEEEE
T ss_pred -eee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCCcEEE
Confidence 111 2336666778889999999999988874 3221 1122233333477888888 79999999999986654
Q ss_pred EEeecccCCccc------eEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 303 YKLYRSSEHTNQ------RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 303 ~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
............ +..-....++ .++.++.++.+.-+|+.+++.+.... ...+..+ ..+.+..|+.++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDG 222 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTT
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCC
Confidence 433211111111 1222222344 77777777764444999998664222 2223321 345666666665444
Q ss_pred eeeec
Q 014125 377 RFPVD 381 (430)
Q Consensus 377 ~~~vw 381 (430)
.+..+
T Consensus 223 ~l~~~ 227 (238)
T PF13360_consen 223 RLYAL 227 (238)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 33333
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.76 E-value=9.4e-06 Score=74.44 Aligned_cols=210 Identities=13% Similarity=0.076 Sum_probs=131.1
Q ss_pred cCCCCceEEEE-eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEEcCCCCCc
Q 014125 134 SDPTSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFDVHRPGRD 207 (430)
Q Consensus 134 ~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~v~d~~~~~~~ 207 (430)
+++||+.+... -..+.+.+.|.++.+...++.... ....+.++|+|++++++ .+ .++...+... .
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~- 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--R- 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeecccc--C-
Confidence 36788766433 335778889999887777766544 33467899999998854 22 2232222211 0
Q ss_pred ccccccccCCCCCCCcceEEEEE--------cCCCCceEEEecCCCeEEEEEcCC-----ceeeEEeeccccCeEEEEEc
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAF--------SPTHTGMLAIGSYSQTSAIYREDN-----MELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~dg~v~~~d~~~-----~~~~~~~~~~~~~i~~~~~~ 274 (430)
. ..+.| .+++. .... .++.|.+.|.++ .+.+..+. -......+.++
T Consensus 271 ---------------d--~~vvfni~~iea~vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vS 329 (635)
T PRK02888 271 ---------------D--WVVVFNIARIEEAVKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTS 329 (635)
T ss_pred ---------------c--eEEEEchHHHHHhhhCCC-EEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEEC
Confidence 0 22222 23233 3333 367899999988 34444444 44567899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEE-------EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC----
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVV-------YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT---- 343 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---- 343 (430)
|||+++++++..+++|.+.|+.+..... ..+.....-.......+|+++|....+-.-|..|..||+.+
T Consensus 330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~ 409 (635)
T PRK02888 330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRA 409 (635)
T ss_pred CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHH
Confidence 9999999998789999999998754210 00000011233445678999998888888999999999876
Q ss_pred ------CCeecccccccCC-----eeEEEEcCCCcEEEEee
Q 014125 344 ------GKWISGFQAAADT-----VNGFSFHPFLPMAASSS 373 (430)
Q Consensus 344 ------~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~ 373 (430)
...+..+..|-.+ ..+=.-.|+|++|++..
T Consensus 410 ~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 410 YKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred hccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 2334444333222 12222367888887764
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.75 E-value=6.4e-06 Score=73.99 Aligned_cols=186 Identities=21% Similarity=0.159 Sum_probs=115.9
Q ss_pred ceEEEEECCCCcEEE-EE---cC-CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--E
Q 014125 175 AAFSVAFNPTGTKIF-AG---YN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--S 247 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~---~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v 247 (430)
.+..-+|+|++..++ .. .. ..+.++++..+....... ..+.-..-.|+|++..++++...||. |
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 566778999998776 33 22 358999998754322111 12233456899988888888888876 5
Q ss_pred EEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE--EeCCCCceEEEEeecccCCccceEEEEEcCCCC
Q 014125 248 AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC--WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 248 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
+++|+..+... .+..-.+.-..-.|+|||+.|+-.+...|.-.| +++..... ..+.. ..... ..-.|+|+|+
T Consensus 265 y~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~-~~~~~--~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF-SGGGN--SNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec-cCCCC--cCccCCCCCC
Confidence 56677766633 344333444577899999999888756665444 45554432 22221 11111 1678999999
Q ss_pred EEEEEcc-CCc--EEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 326 HLGTGGQ-DGL--VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 326 ~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+|+..+. +|. |.+.|+.++..+..+. +......-.|.|++..+...+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 9887664 344 6777776665433333 333445567888888777766543
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.72 E-value=4.3e-05 Score=64.88 Aligned_cols=255 Identities=13% Similarity=0.129 Sum_probs=144.2
Q ss_pred EEEECcCCceEEEecC----------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|||++.+++++. .-.|.+||..+.....++..+. ......+. .+....+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~----------------k~R~~~~~-~~~~~~l 102 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP----------------KPRAQVVP-YKNMFAL 102 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT----------------S-B--BS---GGGEEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC----------------cchheecc-cccceEE
Confidence 4678999998887542 3369999998765433322221 10111111 2233344
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+.|+++++.... -..|.|.|+..++.+..+..... ..+--+++..+...|.||.+.-..+...++......
T Consensus 103 s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-------~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 103 SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-------WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp -TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-------EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-------EEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 778888776643 45699999999998888776541 112112233455578999999999987665442211
Q ss_pred cccCCCCCCCcce-EEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeec----------cccCeEEEEEccCCCE
Q 014125 213 TLKGNKEGQAGIM-SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHG----------QEGGVTHVQFSRDGNY 279 (430)
Q Consensus 213 ~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~ 279 (430)
. .+.....++ ..-++.. .+..++.-+.+|.|+-.|+...... ..+.. -.+.-.-+++++....
T Consensus 176 ~---~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 176 K---VFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp E---ESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred c---ccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 1 112222222 2333443 3445566788999999988765422 12210 1233455788876666
Q ss_pred EEEEec--C-----C--CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEE-ccCCcEEEEEcCCCCeec
Q 014125 280 LYTGGR--K-----D--PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTG-GQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 280 l~~~~~--~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~vwd~~~~~~~~ 348 (430)
|++.-- . | ..|-++|+.+.+... ++. -..++.+++.+.+.+ +|++. ..++.+.+||..+|+.+.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 665430 1 1 157788888875543 321 123466888888765 55444 457899999999999988
Q ss_pred cccc
Q 014125 349 GFQA 352 (430)
Q Consensus 349 ~~~~ 352 (430)
.+..
T Consensus 327 ~~~~ 330 (342)
T PF06433_consen 327 SIEQ 330 (342)
T ss_dssp EE--
T ss_pred ehhc
Confidence 8764
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=9.2e-06 Score=75.51 Aligned_cols=208 Identities=12% Similarity=0.164 Sum_probs=129.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-cEEE-EEcC-C----eEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYN-K----SVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d-~----~i~v~d~~~~~~~ 207 (430)
++.+..++.|+.+|.|.+.+-. -+....++.... .+...-+.-++ .+|+ .+.| . .|++|+++...+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 6678899999999998887732 223345555443 32222333344 4555 4533 2 6999999864322
Q ss_pred c--ccc---ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---C-ceeeEEeeccccCeEEEEEccCCC
Q 014125 208 F--EKY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---N-MELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 208 ~--~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~-~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
. ... ..........+.++.+++.+. +-..+|+|-.+|.|..+.-+ . +....-......+|+.+++..+++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 1 111 111112223467889999998 57799999999999998522 1 111222223456999999999888
Q ss_pred E-EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-cccC
Q 014125 279 Y-LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-AAAD 355 (430)
Q Consensus 279 ~-l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~ 355 (430)
. ++++ .-..|.+|.+.... +... ....+...+.|.++++....+++++.. -+.+|+.....+-..+. +|..
T Consensus 185 s~lFv~--Tt~~V~~y~l~gr~-p~~~--~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 185 SVLFVA--TTEQVMLYSLSGRT-PSLK--VLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred eeEEEE--ecceeEEEEecCCC-ccee--eeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence 7 3333 35689999998554 2222 125677788888888765535555443 59999998777666666 5553
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=3.2e-07 Score=85.24 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=132.8
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++..++.|+-...+..+|+.+.+..+....... .|.-+.. +++++.+| ..|+|.+-|.++ ....
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-----~v~imR~--Nnr~lf~G~t~G~V~LrD~~s--------~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-----GVTIMRY--NNRNLFCGDTRGTVFLRDPNS--------FETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC-----ceEEEEe--cCcEEEeecccceEEeecCCc--------Ccee
Confidence 456788888888899999998887776655443 3444443 67788877 889999999876 3444
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecC---------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCC-CEEEEEec
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSY---------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG-NYLYTGGR 285 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 285 (430)
..+..|.+.+..+.. .+++|++++. |..|+|||++..+.+.-+.-+.++ .-+.|.|.- ..+++++
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S- 285 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS- 285 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-
Confidence 556788999988887 4557777654 445899999988877666655554 667888864 3566666
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
..|...+-|..+-..+...........+.+..++++++|..|+.|..+|.|.+|.
T Consensus 286 ~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8999999993322222111122244556699999999999999999999999997
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.2e-06 Score=80.42 Aligned_cols=183 Identities=12% Similarity=0.109 Sum_probs=124.8
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.++|++++ +++|+-|+.+|.|++++..... ...+.|... ..+|.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------------------~~~~~~s~~-------------~~~Ge 84 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------------------KTNFDHSSS-------------ILEGE 84 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-------------------ccccccccc-------------ccCCc
Confidence 5668888887 4899999999999999876431 011111111 34789
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC-----CcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-----GTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
++++|+.||.|.|-.+-+.+....+.... ++.+++++|+ .+.++ +|.-| +.++.-+--+... .
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df~r------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~----~ 153 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDFKR------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD----S 153 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEecCC------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc----c
Confidence 99999999999999998888777666554 8899999998 34455 45555 7776532211100 0
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC------eEEEEEccCCCEEEEEecCC
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG------VTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~~~~~~d 287 (430)
. ......++|.++.|. ++++|-++.+| |++||..+.+.+..++..... -..+.|.++.+ |+ .| ..
T Consensus 154 v--~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IG-W~ 224 (846)
T KOG2066|consen 154 V--VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IG-WG 224 (846)
T ss_pred e--eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EE-Ee-cC
Confidence 0 224456889999994 55888877665 899999998877766543332 34577876654 33 34 56
Q ss_pred CeEEEEeCC
Q 014125 288 PYILCWDLR 296 (430)
Q Consensus 288 ~~i~i~d~~ 296 (430)
.+|++..++
T Consensus 225 d~v~i~~I~ 233 (846)
T KOG2066|consen 225 DSVKICSIK 233 (846)
T ss_pred CeEEEEEEe
Confidence 788888887
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.1e-05 Score=74.94 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=122.3
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 146 (430)
+|++.+..++.|+.+|.|.+.+-.-. ....+..+ ...+...-|. ..+.++|++.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fqa~-----------------~~siv~~L~~------~~~~~~L~sv~E 85 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQAY-----------------EQSIVQFLYI------LNKQNFLFSVGE 85 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-eeehheec-----------------chhhhhHhhc------ccCceEEEEEee
Confidence 45778889999999999888764311 11111111 1221111221 223357777776
Q ss_pred CCc-----EEEEeccCC------ceeeeee--cccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 147 DHP-----IHLWDATTG------LLRCTYR--AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 147 dg~-----i~vwd~~~~------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
|+. +++|+++.- .+..... .+.......++.+++.+.+-+.+++| .+|.|..+.=+- .+...
T Consensus 86 d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi----~RDrg 161 (933)
T KOG2114|consen 86 DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI----LRDRG 161 (933)
T ss_pred cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc----hhccc
Confidence 654 899998753 1221111 11222234578899999998899988 889988885321 11111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
.-.........+|+.+++..++...+++ ..-..|.+|.+....+ ...+..|..++.|..|++....+++++ +..+.
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~ 238 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLY 238 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEE-EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEE
Confidence 1111123345789999998866553333 3346789999874442 445777888999999987666566665 67899
Q ss_pred EEeCCCCc
Q 014125 292 CWDLRKAV 299 (430)
Q Consensus 292 i~d~~~~~ 299 (430)
+|+....+
T Consensus 239 fY~sd~~~ 246 (933)
T KOG2114|consen 239 FYDSDGRG 246 (933)
T ss_pred EEcCCCcc
Confidence 99987543
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.4e-07 Score=78.31 Aligned_cols=210 Identities=13% Similarity=0.103 Sum_probs=142.0
Q ss_pred ceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-CCeEEEEEc
Q 014125 175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYRE 252 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~~d~ 252 (430)
.|+.+.-.. .+++. ++.||.++.|.-... ....+......|...+.+++.+- ++.++.+.+. |..++++|+
T Consensus 11 ~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i-----sGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 11 VITHVFPTK-AKFIIQASLDGHKKFWKKSRI-----SGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred eeeeEeeeh-hheEEeeecchhhhhcCCCCc-----cceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEe
Confidence 455544433 34555 779999999975431 11334455677888889999888 6678888676 999999998
Q ss_pred CCceeeEEeec--cccCeEEEEEccCC--CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 253 DNMELLYVLHG--QEGGVTHVQFSRDG--NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 253 ~~~~~~~~~~~--~~~~i~~~~~~~~~--~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
.+-..+..++. ..+.+.. ..+|.. ..|+++...++.+.++|-....+... ....-|..+|..+.+.|.+..++
T Consensus 84 En~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~--~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG--YFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc--eecccccCceEEEEeecccccee
Confidence 87655433331 1222221 122221 25666665889999999877653322 22256899999999999999999
Q ss_pred EEccCCcEEEEEcCC------CCeec---------ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCC
Q 014125 329 TGGQDGLVHIYDLQT------GKWIS---------GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDEN 393 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~ 393 (430)
+....|.|.-|.... .+... .+.--.....++.|+|++..+.+-+ .|.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-----------------~Dr 223 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-----------------PDR 223 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-----------------ccc
Confidence 999999999999872 11211 2222344678999999888776665 678
Q ss_pred cEEEEeecccccccccCC
Q 014125 394 CVSVWSFLYASMMENADG 411 (430)
Q Consensus 394 ~i~~w~~~~~~~~~~~~~ 411 (430)
.||++.+.++++++.++-
T Consensus 224 kVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred EEEEEEeccchhhhhhhc
Confidence 888888888887766654
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5.8e-08 Score=89.78 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=127.9
Q ss_pred cceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-eEEEEE
Q 014125 174 TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYR 251 (430)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~~~d 251 (430)
...+|++|+.+.++|+.| ..|.|++|++.++ .......+|..+++-+.-+.++..+|.+++... -..+|+
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 377899999999999966 8999999999884 344455789999999999986665555555544 578899
Q ss_pred cCC-ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 252 EDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 252 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+.+ +.+.+.+. .-.++.|+..-..-+.|+ ......+||+.+.......+....+....-+...|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt-~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGT-EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcc-cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 865 33444443 346788887765555666 5677899999988654432322223333346789999988876
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.|| .+||++..+.+..|......+ .-.|||.|.-++.-+
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec
Confidence 566 479999888888776554322 236899998777655
No 323
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.60 E-value=0.0001 Score=60.96 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=111.8
Q ss_pred eecccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+.+.+-.+.+..|+|+|+.+ ++++....+.|..++.+ ++.... ..+..-+..-.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~----------------i~l~g~~D~EgI~y----- 72 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR----------------IPLDGFGDYEGITY----- 72 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE----------------EE-SS-SSEEEEEE-----
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE----------------EeCCCCCCceeEEE-----
Confidence 45556666799999999755 66667778888888764 332211 11222234555666
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCc-e-----eeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC--
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGL-L-----RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR-- 203 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~-~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~-- 203 (430)
..++.++++.-+++.+.++++.... . ...+...........+-.++|+|.+..|++. ...-..+|.++.
T Consensus 73 --~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 73 --LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp ---STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred --ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 3456666666668999999884321 1 1222221111233357799999987766644 555566776654
Q ss_pred CCCccccc--ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---------cCeEEEE
Q 014125 204 PGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVQ 272 (430)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~ 272 (430)
........ ..... .......+.+++++|..+.+++.+..+..|..+| .+|+++..+.-.. ...-.|+
T Consensus 151 ~~~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp -SS--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred Cccceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 11111100 00110 1223345899999998888999999999999999 5677665544221 2467899
Q ss_pred EccCCCEEEEEecCCCeEEEE
Q 014125 273 FSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~ 293 (430)
|.++|+ |+..+ .-+..+.|
T Consensus 229 ~d~~G~-LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGN-LYIVS-EPNLFYRF 247 (248)
T ss_dssp E-TT---EEEEE-TTTEEEEE
T ss_pred ECCCCC-EEEEc-CCceEEEe
Confidence 999986 55555 66665554
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=8.2e-08 Score=85.66 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=128.7
Q ss_pred ceeEEEECcC--CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 62 FLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 62 ~v~~~~~sp~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.|++++-+ ...++.|..+|.|.+-.+....- ....+.-.+..+.++++|.+. |.+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---------------Ss~E~tp~~ar~Ct~lAwneL------Dtn 116 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---------------SSAEVTPGYARPCTSLAWNEL------DTN 116 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCccc---------------ccceecccccccccccccccc------cHH
Confidence 4777777654 34788899999999987764311 112233345568899999764 566
Q ss_pred eEEEEe----CCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 140 VFASTT----RDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 140 ~l~~~~----~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.||.|- .|..+.|||+.++ .+........ +......+++|..+.+++.+| ....++++|++.......
T Consensus 117 ~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~--- 191 (783)
T KOG1008|consen 117 HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS--- 191 (783)
T ss_pred HHHhhhhhhcccCCccceecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---
Confidence 777773 3667999999887 2222222111 111245588898888888777 677999999985321111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE-cCCce-eeEEeeccc----cCeEEEEEccCCC-EEEEEec
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME-LLYVLHGQE----GGVTHVQFSRDGN-YLYTGGR 285 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d-~~~~~-~~~~~~~~~----~~i~~~~~~~~~~-~l~~~~~ 285 (430)
.-.+..+..+.+.|...+++++.. ||.|.+|| .+.-+ ++..+...+ ..+..++|.|... .+++..+
T Consensus 192 ------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 192 ------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred ------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 111224666778886666666555 99999999 44332 333332122 2489999999654 4555555
Q ss_pred CCCeEEEEeCCC
Q 014125 286 KDPYILCWDLRK 297 (430)
Q Consensus 286 ~d~~i~i~d~~~ 297 (430)
..++|++||+..
T Consensus 265 dS~tIrlydi~~ 276 (783)
T KOG1008|consen 265 DSITIRLYDICV 276 (783)
T ss_pred CcceEEEecccc
Confidence 778999999863
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-06 Score=73.57 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=70.8
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
....+...|..++|+|....++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+....+.+|...|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 345667789999999977779999999999999999999998888877 7899999998766544444499999999999
Q ss_pred CCceEE
Q 014125 297 KAVQVV 302 (430)
Q Consensus 297 ~~~~~~ 302 (430)
......
T Consensus 267 ~~~~~~ 272 (463)
T KOG1645|consen 267 QPEGPL 272 (463)
T ss_pred CCCchH
Confidence 876543
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.55 E-value=9.1e-06 Score=77.33 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=100.9
Q ss_pred CceEEEE-eCCCcEEEEeccCCceeeeeecccccccccceEEEEECC------CCcEEEEEcCCeEEEEEcCCCCCcccc
Q 014125 138 SCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP------TGTKIFAGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~d~~i~v~d~~~~~~~~~~ 210 (430)
.++|+.. .....|+-.|++.|+.+..+..+... +|..++-.. ....+++-.++.+..||.+..+....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~----~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v- 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI----PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV- 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc----ceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence 3444433 34577999999999999999987642 233333211 12334444889999999997542211
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.............+|++-+. ...||+|+.+|.|++||--..+....+.+...+|..|..+.||++|+++| +..|
T Consensus 568 --~~~~k~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyL 641 (794)
T PF08553_consen 568 --DSQSKQYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYL 641 (794)
T ss_pred --eccccccccCCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceE
Confidence 11111123345577887775 44899999999999999544444555667788999999999999999987 7788
Q ss_pred EEEeC
Q 014125 291 LCWDL 295 (430)
Q Consensus 291 ~i~d~ 295 (430)
.+++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 88875
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=3.2e-05 Score=74.86 Aligned_cols=237 Identities=13% Similarity=0.128 Sum_probs=131.7
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v 198 (430)
..|.++.| -.+++.++.+...|.|.+-|.++......-.. .. .|.+++|+||++.++ +....++.+
T Consensus 69 ~~i~s~~f-------l~d~~~i~v~~~~G~iilvd~et~~~eivg~v-d~-----GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQF-------LADTNSICVITALGDIILVDPETLELEIVGNV-DN-----GISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEE-------ecccceEEEEecCCcEEEEcccccceeeeeec-cC-----ceEEEeecCCCcEEEEEeCCcEEEE
Confidence 36777777 55778899999999999999887654332222 22 889999999999998 555666655
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
-.-.- ..... ..+... ....+..-.+-|.. .... +-|+ .|.....+.... +.......+ ..=++|.|--||
T Consensus 136 mT~~f-~~i~E--~~L~~d-~~~~sk~v~VGwGr-keTq-frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 136 MTKDF-EPIAE--KPLDAD-DERKSKFVNVGWGR-KETQ-FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDG 207 (1265)
T ss_pred Eeccc-cchhc--cccccc-cccccccceecccc-ccee-eecc-hhhhcccccccccccccchhhc-cCCceEEEccCC
Confidence 43211 00000 000000 00011122223322 1100 1111 111111111100 001111112 223679999999
Q ss_pred CEEEEEe---cCC-CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc---cCCcEEEEEcC---CCCee
Q 014125 278 NYLYTGG---RKD-PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG---QDGLVHIYDLQ---TGKWI 347 (430)
Q Consensus 278 ~~l~~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~---~~~~~ 347 (430)
+++++.. ..+ ..|++||-+..-.. ........-.+++|-|.|..+++-. .|+.|.++.-+ .|+..
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drEg~Lns-----~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDREGALNS-----TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV 282 (1265)
T ss_pred cEEEEEEEeccCCceeEEEecccchhhc-----ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc
Confidence 9998833 134 79999998722111 0112223335699999999988764 45678888754 23333
Q ss_pred cccccccCCeeEEEEcCCCcEEEE---eeCCceeeecC
Q 014125 348 SGFQAAADTVNGFSFHPFLPMAAS---SSGHRRFPVDD 382 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~~~~l~s---~~~d~~~~vw~ 382 (430)
..+......|..++|+.++..|+. ......+.+|.
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 334444445999999999999988 55555699983
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=9.5e-06 Score=75.32 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=77.3
Q ss_pred eEEEECcCCceEEEecC----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 64 KGIKWSPDGSSFLTSSE----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
+-.+|+|...+||.++- .|+|.||- +++.... ...-.-.+.++||+| ..-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr------------------~Vt~P~hatSLCWHp-------e~~ 72 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR------------------DVTYPVHATSLCWHP-------EEF 72 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc------------------ccccceehhhhccCh-------HHH
Confidence 34679998889888764 57888883 2222111 111112456799955 566
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR 203 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~ 203 (430)
.|+.|-.-|.+.+|...+.+.......|. .+|..+.|+++|..++++ .-|.|.+|....
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~htv~~th~-----a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHTVVETHP-----APIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HHhhccccceeEEEecCCceeeeeccCCC-----CCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 89999999999999987765544444333 389999999999999977 679999998764
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=5.2e-05 Score=64.37 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=143.6
Q ss_pred CCCCceEEEEe----------CCCcEEEEeccCCceeeeeecccc--cccccceEEEEECCCCcEEEEE---cCCeEEEE
Q 014125 135 DPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTGTKIFAG---YNKSVRVF 199 (430)
Q Consensus 135 ~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~---~d~~i~v~ 199 (430)
+|+++.+++++ +.-.|.+||..+-.....+..+.. .........+.++.++++++.. --..|.|.
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 77888887653 345699999999888777666542 1111233456888899888743 45678888
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEe----eccccCe-EEEEE
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVL----HGQEGGV-THVQF 273 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~----~~~~~~i-~~~~~ 273 (430)
|+....- . ..+. ..-|...-|.++.-|.+-+.||.+.-..+. .|+...+. .....++ ..-++
T Consensus 124 Dl~~~kv-v---~ei~--------~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 124 DLAAKKV-V---GEID--------TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp ETTTTEE-E---EEEE--------GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred ECCCCce-e---eeec--------CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 8876311 0 1110 011222234345567888889999998887 34443221 1111222 23344
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC--------CccceEEEEEcCCCCEEEEEcc---CC-------c
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE--------HTNQRILFDIEPSGRHLGTGGQ---DG-------L 335 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~---dg-------~ 335 (430)
...+..++-.+ .+|.|+-.|+............... -.+.-.-+++++....|++.-. +| .
T Consensus 192 ~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 192 SRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp ETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred ECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 44444444455 7999999998876543322221110 0112223677765554443321 11 3
Q ss_pred EEEEEcCCCCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 336 VHIYDLQTGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|.+.+ ..++.+.+||..+++++..+.++-.
T Consensus 271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~----------------~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS----------------AGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE----------------TTTTEEEEEETTT--EEEEE---SS
T ss_pred EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc----------------CCCCeEEEEeCcCCcEEeehhccCC
Confidence 88899999999998874 34678899988765 555443 2578899999999999888876543
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.53 E-value=2.7e-05 Score=69.34 Aligned_cols=261 Identities=9% Similarity=0.067 Sum_probs=129.6
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcc------cccc-----------cc---ccc----c-cCcccceee-
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY------DVNA-----------CS---LAK----D-QDSYEASLV- 115 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~------~~~~-----------~~---~~~----~-~~~~~~~~~- 115 (430)
.|+.+.|+++..-|+.|...|.|.||.+..++... .... .. ... . .+...+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999998899999999999999886554322 0000 00 000 0 001111111
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc---ccccccceEEEEEC-----CCC--
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFN-----PTG-- 185 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~-----~~~-- 185 (430)
....++|.+++. | +=..++.|..+|.+.|.|++....+..-.... .......++++.|. .|+
T Consensus 83 ~~~~g~vtal~~-------S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKN-------S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE---------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEec-------C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 123567888886 2 44589999999999999998777666533322 11122356677765 233
Q ss_pred -cEEEEE-cCCeEEEEEcCC-CCCcccccccccCCCCCCCcceEEEE-EcCCCC-------------------ceEEEec
Q 014125 186 -TKIFAG-YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIA-FSPTHT-------------------GMLAIGS 242 (430)
Q Consensus 186 -~~l~~~-~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-------------------~~l~~~~ 242 (430)
-.+++| ..|.+.+|.+.. .+..+.. .+......+.+++..+. ++.+.+ +-+++..
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 344455 779999998852 1111110 11111123334444443 322111 1234445
Q ss_pred CCCeEEEEEcCCceeeEEeeccccCeEEEEEc-----cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE
Q 014125 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-----RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL 317 (430)
Q Consensus 243 ~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 317 (430)
.+..++++...+.+...+..........+.+- ..+..|++-. .+|.+++|.+..-+...............+..
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 57889999988776655444222233344452 2455677777 89999999998876554333222223334445
Q ss_pred EEEcCCCCEEEEEccC
Q 014125 318 FDIEPSGRHLGTGGQD 333 (430)
Q Consensus 318 ~~~~~~~~~l~~~~~d 333 (430)
..++++|..++-.+..
T Consensus 312 ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EE-TTS-EEEE-SSS
T ss_pred cEECCCCCEEEEeCcc
Confidence 7778889877665543
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=0.00042 Score=55.73 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=64.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
|++++.|...|.+++.+.+++.+...+.... .-.+... ..+++.++..|+.|+..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----------------~vk~~a~--------~d~~~glIycgshd~~~y 118 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----------------TVKVRAQ--------CDFDGGLIYCGSHDGNFY 118 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh----------------hhccceE--------EcCCCceEEEecCCCcEE
Confidence 5678889999999998888875432222211 0111111 156889999999999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECC-CCcEEEEEcCCeEEEEEc
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDV 201 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~v~d~ 201 (430)
..|..+..++...+.... ...+-+..| ++.+.++...|.+.--..
T Consensus 119 alD~~~~~cVykskcgG~-----~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 119 ALDPKTYGCVYKSKCGGG-----TFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred EecccccceEEecccCCc-----eeccceecCCCceEEEEeccceEEEEcc
Confidence 999999888877655443 222344555 455555555555544433
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=9e-05 Score=68.24 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=94.0
Q ss_pred cCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-------------------------
Q 014125 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR------------------------- 285 (430)
Q Consensus 231 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------------- 285 (430)
.|++..+....-..+.+.+.|..+.+....+.. .+....++++|+|+++++++.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 343333333344456778888887777666553 234567788888888877751
Q ss_pred --------------CCCeEEEEeCCC----CceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCe
Q 014125 286 --------------KDPYILCWDLRK----AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKW 346 (430)
Q Consensus 286 --------------~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~ 346 (430)
.++.|.+.|.++ .......+ .-......+.++|||+++++++. +++|.|+|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yI----PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYV----PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEE----ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 113466666655 22222222 12334556899999998776654 88999999987553
Q ss_pred ------------ecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 347 ------------ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 347 ------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
+..... .......+|.++|....|..-|..+..|+...
T Consensus 356 ~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 222222 22446778999998888888777777776543
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.42 E-value=0.00041 Score=62.75 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=107.8
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
.|++|+. .|+.+..+..... .+.++.|+.+..+++...||.+++||+.... .+...... ....-....+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~-----~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i-~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSG-----RIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEI-EEEKVLECRIFAI 133 (410)
T ss_pred EEEEECC-CCCEeEEEEECCC-----CEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhc-cccCccccccccc
Confidence 4888886 4555666554442 8999999998888889999999999986321 11100000 0001111112222
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeecccc---------CeEE-EEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG---------GVTH-VQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~---------~i~~-~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+.. .+ +++-..++.+.+.+--... ....+..-.. .... ..++.+....+... .++.+.+.+-..
T Consensus 134 ~~~~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-~g~~i~~i~~~~ 209 (410)
T PF04841_consen 134 WFYK-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-NGETIYIIDENS 209 (410)
T ss_pred ccCC-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe-cCCEEEEEEccc
Confidence 2222 22 3333445555554322211 1111110000 0111 22344444444444 455555444322
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCC
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFL 366 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 366 (430)
... ....+++..+++||+|++||.-..+|.+.|...+-.+.+..+... ......+.|.-+.
T Consensus 210 ~~~--------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 210 FKQ--------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccc--------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 111 123467999999999999999999999999987766666666544 3466778887554
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=3.7e-07 Score=81.65 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=131.4
Q ss_pred ceEEEEECCCCc--EEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC----CCeE
Q 014125 175 AAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTS 247 (430)
Q Consensus 175 ~v~~~~~~~~~~--~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v 247 (430)
.+.|+++.-+.. .+++| .+|.|-+-.++.+... -.....++..+.++++|++-+.+.||+|-. |..+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 455666554443 44455 7899999888764322 112235667789999999988888888853 5679
Q ss_pred EEEEcCCc--eee--EEeec-cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC
Q 014125 248 AIYREDNM--ELL--YVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 248 ~~~d~~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
.|||+.++ .+. ..+.+ ......+++|..+.+.+++|. ....+.++|++........ -.+..+..+..+|
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm-~sr~~~ifdlRqs~~~~~s-----vnTk~vqG~tVdp 205 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM-TSRSVHIFDLRQSLDSVSS-----VNTKYVQGITVDP 205 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhccc-ccchhhhhhhhhhhhhhhh-----hhhhhcccceecC
Confidence 99999876 221 12222 334567899998888888888 8889999999854222111 1233455677788
Q ss_pred -CCCEEEEEccCCcEEEEE-cCCC-CeecccccccC----CeeEEEEcCCCc-EEEEeeC-CceeeecCCCcccccc
Q 014125 323 -SGRHLGTGGQDGLVHIYD-LQTG-KWISGFQAAAD----TVNGFSFHPFLP-MAASSSG-HRRFPVDDFEDLHLSG 390 (430)
Q Consensus 323 -~~~~l~~~~~dg~i~vwd-~~~~-~~~~~~~~~~~----~v~~~~~~~~~~-~l~s~~~-d~~~~vw~~~~l~~~~ 390 (430)
.+.|+++-. ||.|-+|| .++- .++..+..... .+..++|.|... ++++... .+.|+.++.....+-+
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc
Confidence 677877665 99999999 4433 33444432222 389999999665 5555544 4567776655544443
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.41 E-value=0.00033 Score=62.49 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=139.0
Q ss_pred CcCCceEEEec---------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 69 SPDGSSFLTSS---------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 69 sp~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
|||+++++... ..+.+.|||+.++...... .....+....| +|+|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~------------------~~~~~~~~~~~-------sP~g~ 55 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT------------------PPPPKLQDAKW-------SPDGK 55 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-------------------EETTBSEEEE--------SSST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc------------------CCcccccccee-------ecCCC
Confidence 68888877642 2467889999875321100 00246777788 77899
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeeccccc-----------cc-ccceEEEEECCCCcEEEE-E-cCCeEEEEEcC---
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----------DE-ITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVH--- 202 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~-~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~--- 202 (430)
.++... ++.|.+++..++...+........ ++ ...-..+-|+||+++|+. . .+..|..+.+.
T Consensus 56 ~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~ 134 (353)
T PF00930_consen 56 YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS 134 (353)
T ss_dssp EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES
T ss_pred eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC
Confidence 888875 567999998877544332211000 00 123357899999999983 3 44444443322
Q ss_pred CCCC---cccccc------------------------cccCC--CCCCCcceEEEEEcCCCCceEEE-ecCC---CeEEE
Q 014125 203 RPGR---DFEKYS------------------------TLKGN--KEGQAGIMSAIAFSPTHTGMLAI-GSYS---QTSAI 249 (430)
Q Consensus 203 ~~~~---~~~~~~------------------------~~~~~--~~~~~~~v~~~~~~~~~~~~l~~-~~~d---g~v~~ 249 (430)
.... ....+. .+... .......+..+.|.+++..+++. ...+ ..+.+
T Consensus 135 ~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 135 PPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp SSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE
T ss_pred CccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE
Confidence 1110 000000 00000 01234567888898854423333 2222 23666
Q ss_pred EEcCCceeeEEeec-cccC---eEEEEEc-cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce-EEEEEcCC
Q 014125 250 YREDNMELLYVLHG-QEGG---VTHVQFS-RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR-ILFDIEPS 323 (430)
Q Consensus 250 ~d~~~~~~~~~~~~-~~~~---i~~~~~~-~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 323 (430)
+|..++........ ..+. -....|. +++..++..+..+|.-+||-+.........+ ....-.| ..+.++++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l---T~G~~~V~~i~~~d~~ 291 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL---TSGDWEVTSILGWDED 291 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES---S-SSS-EEEEEEEECT
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc---ccCceeecccceEcCC
Confidence 77776654333321 2222 2355554 6666555444377755554443332222232 2233445 34778888
Q ss_pred CCEE-EEEccC----CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 324 GRHL-GTGGQD----GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 324 ~~~l-~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
++.| +++..+ ..|+.-++..+..+..+......-..+.|+|++++++-..
T Consensus 292 ~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 292 NNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 7654 455543 2466666662333444443322226899999999776554
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=0.00063 Score=61.33 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=62.2
Q ss_pred ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 263 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
.....+.+++++|+...++.|+ .||.|.+||...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGC-EDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEe-cCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3667899999999999999999 999999999987633321 233456789999999999999999999999986
Q ss_pred C
Q 014125 343 T 343 (430)
Q Consensus 343 ~ 343 (430)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 3
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.39 E-value=5.8e-05 Score=67.97 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=105.2
Q ss_pred CCCCceEEEEe---CC-CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTT---RD-HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~ 208 (430)
+|++..++..+ .. ..+.++++.+++......... .-..-.|+|||+.|+ +. .|+...+|-++..+...
T Consensus 201 s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g------~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 201 SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG------NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC------ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 66776655442 22 458999999887665554322 223568999999988 44 66665554443322221
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.. +....+.-+.=.|+|++..++++.+..|. |.+++...+.. ..+....+.-..-.|+|||++|+..+..
T Consensus 275 ~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 275 PR-------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred ee-------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 11 11112223356899988888888777776 55556655544 3333333333478899999999887744
Q ss_pred CCe--EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 287 DPY--ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 287 d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
+|. |.+.|+.++.. ... .........-+|.|+|+.+...+.
T Consensus 347 ~g~~~i~~~~~~~~~~-~~~----lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 347 GGQWDIDKNDLASGGK-IRI----LTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCceeeEEeccCCCCc-EEE----ccccccCCCCCcCCCCceEEEecc
Confidence 565 66667666543 111 122333334667888877665544
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.9e-05 Score=72.98 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=114.7
Q ss_pred ceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
.++|++++ +++++ +..+|.|++++..... .....|... .. .+.++++|+.||+|.|..+-
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----------~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP----------KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc----------ccccccccc------cc-CCceEEEecCCCcEEEeecc
Confidence 45566664 55666 5589999999886421 011112111 22 67799999999999999998
Q ss_pred CceeeEEeeccccCeEEEEEccC-----CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 254 NMELLYVLHGQEGGVTHVQFSRD-----GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
+.+...++. ...++.+++++|+ .+.+++|| ..| +.++.-+-....... ......++|.++.|. |.++|
T Consensus 102 ~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG-~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 102 TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGG-MAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred CCccceeEe-cCCcceeEEeccchhhhhhhheeecC-cce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEE
Confidence 887776665 4578999999998 45788888 777 777764321111111 124567889999996 78999
Q ss_pred EEccCCcEEEEEcCCCCeecccccccCC------eeEEEEcCCCcEE
Q 014125 329 TGGQDGLVHIYDLQTGKWISGFQAAADT------VNGFSFHPFLPMA 369 (430)
Q Consensus 329 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l 369 (430)
-++.+| |+|||+.+++.+..++..... ...+.|.++.+++
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence 998888 999999998887766543333 3456676654433
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.37 E-value=0.0009 Score=62.43 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=134.1
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe-------
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------- 145 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------- 145 (430)
..++.++.+|.|.-+|.++++..-........ . .-..+.-.|. - .+..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~------~---------~~~~i~ssP~----v-~~~~v~vg~~~~~~~~ 170 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV------P---------PGYTMTGAPT----I-VKKLVIIGSSGAEFFA 170 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc------C---------cceEecCCCE----E-ECCEEEEecccccccc
Confidence 56777788889999998887654332211100 0 0000111110 0 112344443
Q ss_pred --CCCcEEEEeccCCceeeeeecccccccc---------------cce-EEEEECCCCcEEEEE-cCC------------
Q 014125 146 --RDHPIHLWDATTGLLRCTYRAYDAVDEI---------------TAA-FSVAFNPTGTKIFAG-YNK------------ 194 (430)
Q Consensus 146 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~-~d~------------ 194 (430)
.+|.+..+|..+|+.+..+......... ..+ ...++.+.+..++.+ .++
T Consensus 171 ~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 171 CGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCC
Confidence 4678999999999988877653210000 001 123444444455533 343
Q ss_pred ------eEEEEEcCCCCCcccccccccCC--CCCCCcc-eEEEE-EcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc
Q 014125 195 ------SVRVFDVHRPGRDFEKYSTLKGN--KEGQAGI-MSAIA-FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (430)
Q Consensus 195 ------~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~-v~~~~-~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 264 (430)
.|.-+|..++...+......... ......+ +..+. ..-.....+++++.+|.+..+|.++++.+......
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV 330 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence 68888887765544322111000 0111111 11111 11101136788889999999999999988765421
Q ss_pred ccCeEEEEEccCCCEEEEEe-----------------cCCCeEEEEeCCCCceEEEEeecccCCc----cce--EEEEEc
Q 014125 265 EGGVTHVQFSRDGNYLYTGG-----------------RKDPYILCWDLRKAVQVVYKLYRSSEHT----NQR--ILFDIE 321 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~-----------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~~~~~ 321 (430)
...++.+| ..++... ..+|.|...|+.+++...........+. ... ..+..
T Consensus 331 ---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~- 404 (488)
T cd00216 331 ---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT- 404 (488)
T ss_pred ---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-
Confidence 11233444 2333321 1367888899988865543322100000 111 11222
Q ss_pred CCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 322 PSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 322 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
.+..|+.++.||.|+.+|..+|+.+..++.
T Consensus 405 -~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 -AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred -cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 467889999999999999999999888764
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=2.1e-05 Score=70.47 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=68.5
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
.+|++...+.. ..........+.+.+++++|+...++.|+.||+|.+||...+... +....-.++.++|||+|.+++
T Consensus 239 ciYE~~r~klq-rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRNKLQ-RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecCcee-EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 45666544222 222222456788999999999999999999999999999876433 222344678999999999999
Q ss_pred EeeCCceeeecCCC
Q 014125 371 SSSGHRRFPVDDFE 384 (430)
Q Consensus 371 s~~~d~~~~vw~~~ 384 (430)
+|+..|.+.+||..
T Consensus 316 V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 316 VGSEQGELQCFDMA 329 (545)
T ss_pred EEcCCceEEEEEee
Confidence 99999999888653
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.36 E-value=0.00067 Score=63.24 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=146.7
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee--eeeeccccCccCCCCceEEEEeCCCc
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY--DFCWFPHMSASDPTSCVFASTTRDHP 149 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (430)
+..++.++.++.+.-.|..+++..-....... .. .....+. .+.. .++..++.++.+|.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~------~~-----~~~~~~~~~g~~~--------~~~~~V~v~~~~g~ 121 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLP------AD-----RGCCDVVNRGVAY--------WDPRKVFFGTFDGR 121 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCC------cc-----ccccccccCCcEE--------ccCCeEEEecCCCe
Confidence 44666777889999999988865433222110 00 0000000 0000 02257888889999
Q ss_pred EEEEeccCCceeeeeecccccccccceE-EEEECCCCcEEEEE---------cCCeEEEEEcCCCCCcccccccccC--C
Q 014125 150 IHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAG---------YNKSVRVFDVHRPGRDFEKYSTLKG--N 217 (430)
Q Consensus 150 i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~--~ 217 (430)
|..+|.++|+.+..+...........+. +..+. ++.+++.+ .++.+..+|..++...+........ .
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 9999999999988876543210000011 11121 23333332 2577888888776554432211000 0
Q ss_pred CCC---------CC-c-ceEEEEEcCCCCceEEEecCCC------------------eEEEEEcCCceeeEEeeccccCe
Q 014125 218 KEG---------QA-G-IMSAIAFSPTHTGMLAIGSYSQ------------------TSAIYREDNMELLYVLHGQEGGV 268 (430)
Q Consensus 218 ~~~---------~~-~-~v~~~~~~~~~~~~l~~~~~dg------------------~v~~~d~~~~~~~~~~~~~~~~i 268 (430)
... +. . .-...++.+ ...++++++.++ .|.-+|..+++....++.-....
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~ 279 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL 279 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence 000 00 0 011334444 345677776554 79999999999887765211111
Q ss_pred E------EEEEc----cCCC---EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-----
Q 014125 269 T------HVQFS----RDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----- 330 (430)
Q Consensus 269 ~------~~~~~----~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----- 330 (430)
. ...+. -++. .+++++ .+|.+..+|.++++........ ...++.+| ..++.+
T Consensus 280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~--~~vyv~~~~~~ 349 (488)
T cd00216 280 WDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLISARPEV-------EQPMAYDP--GLVYLGAFHIP 349 (488)
T ss_pred cccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEeeEeEee-------ccccccCC--ceEEEcccccc
Confidence 1 01111 1333 566676 8999999999999765433211 01123333 222221
Q ss_pred -------------ccCCcEEEEEcCCCCeeccccccc--------CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 331 -------------GQDGLVHIYDLQTGKWISGFQAAA--------DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 331 -------------~~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+|.+.-.|+.+|+.+....... .+...-.....+.+|+.++.||.+...|.
T Consensus 350 ~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 350 LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 246789999999998877665331 11100011124566777777777766544
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=2.4e-05 Score=72.79 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=83.7
Q ss_pred EEEECCCCcEEEE-E----cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 178 SVAFNPTGTKIFA-G----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 178 ~~~~~~~~~~l~~-~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
-..|+|...++++ + ..|.|.||-- ++.+. .. ...+..+++++|+| ..-+|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-r~--------Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-RD--------VTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-cc--------cccceehhhhccCh-HHHHHhhccccceeEEEec
Confidence 4579999988883 2 4688988843 22111 10 11123467899999 7778999999999999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.+.+.-.....|..+|..+.||++|..++++. .-|.|.+|...
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 88877777778999999999999999999998 89999999875
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.31 E-value=0.00033 Score=61.65 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=107.8
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCC----CcEEEEEc----------C-CeEEEEEcCCCC---Ccccc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKIFAGY----------N-KSVRVFDVHRPG---RDFEK 210 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~----------d-~~i~v~d~~~~~---~~~~~ 210 (430)
.|++.|..+.+.+..+..... ++...+..+.+..+ ..++++|. . |.|.++++.... ..++.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578888888877776665543 33334445556543 46666431 1 889999998731 11111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEeecccc--CeEEEEEccCCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d 287 (430)
.. .....++|++++--. + .|+++ .++.|.+|++...+ ....-. +.. .+.++.. .+++++++. ..
T Consensus 82 i~-----~~~~~g~V~ai~~~~--~-~lv~~-~g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~--~~~~I~vgD-~~ 148 (321)
T PF03178_consen 82 IH-----STEVKGPVTAICSFN--G-RLVVA-VGNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSV--FKNYILVGD-AM 148 (321)
T ss_dssp EE-----EEEESS-EEEEEEET--T-EEEEE-ETTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEE--ETTEEEEEE-SS
T ss_pred EE-----EEeecCcceEhhhhC--C-EEEEe-ecCEEEEEEccCcccchhhhe-ecceEEEEEEec--cccEEEEEE-cc
Confidence 11 122356788887763 3 33333 35899999998777 433322 333 4555544 566899998 77
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
..+.++..+........+.. ......++++.+-++++.++.+..+|.+.++...
T Consensus 149 ~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 78887765543332323322 3345668888888666799999999999999886
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.31 E-value=0.00015 Score=69.37 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=96.9
Q ss_pred CCceEEEe-cCCCeEEEEEcCCceeeEEeeccccC-eEEEEEccC-------CCEEEEEecCCCeEEEEeCCCCce-EEE
Q 014125 234 HTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRD-------GNYLYTGGRKDPYILCWDLRKAVQ-VVY 303 (430)
Q Consensus 234 ~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~~d~~i~i~d~~~~~~-~~~ 303 (430)
+.++|+.. .....|+-.|+..|+.+..+..+... |..+ .|+ ....++|- .++.+..||.|-... .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGl-s~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGL-SDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEE-CCCceEEeccCCCCCceee
Confidence 45555554 35678999999999999999877643 4444 443 23345566 789999999997542 221
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
.....-.......|++-+.+| +||+|+.+|.||+||--..+....+++-..+|.+|..+.||++|++.+..-.+
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLL 642 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEE
Confidence 111112344567778777665 78999999999999954333334556777899999999999988877654333
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00046 Score=61.62 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=124.2
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee------eee-----------------ccc----c----
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC------TYR-----------------AYD----A---- 169 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~-----------------~~~----~---- 169 (430)
.|..+.+ .++...|++|...|.|.+|.....+... ... ... .
T Consensus 3 ~v~~vs~-------a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSF-------APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEE-------ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEe-------cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccc
Confidence 4666777 5567789999999999998875432221 000 000 0
Q ss_pred -------cccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEcC----C--
Q 014125 170 -------VDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSP----T-- 233 (430)
Q Consensus 170 -------~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~----~-- 233 (430)
....++|++++.+.-| ++++ ..+|.+.|.|++.+.-.+. ..+.. ........++++.|.. +
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~--~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN--ENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE--EEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee--ccccccccccccccCeeEEEEEEEecCCCc
Confidence 0014578899987555 5554 4799999999976533222 11111 1223345678888862 1
Q ss_pred -CCceEEEecCCCeEEEEEcC--C-cee----eEEeeccccCeEEEE-EccC-C-------------------CEEEEEe
Q 014125 234 -HTGMLAIGSYSQTSAIYRED--N-MEL----LYVLHGQEGGVTHVQ-FSRD-G-------------------NYLYTGG 284 (430)
Q Consensus 234 -~~~~l~~~~~dg~v~~~d~~--~-~~~----~~~~~~~~~~i~~~~-~~~~-~-------------------~~l~~~~ 284 (430)
..-.+++|+..|.+.+|.+- . +.. ......+.++|..+. |+.+ | +.+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 12478899999999999764 1 211 112223445665554 3221 1 1234444
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE-----cCCCCEEEEEccCCcEEEEEcCCCCeeccccccc----C
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI-----EPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA----D 355 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~ 355 (430)
.+..++++...+.+...+.. ........+.+ ...+..|++-..+|.|+++.+..-+.+..++.+. .
T Consensus 233 -Se~~irv~~~~~~k~~~K~~----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 233 -SESDIRVFKPPKSKGAHKSF----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred -cccceEEEeCCCCcccceee----ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 58899999988765443222 11122223333 2346678888999999999999988877666432 2
Q ss_pred CeeEEEEcCCCcEEEEeeC
Q 014125 356 TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~ 374 (430)
.+....++++|..++-.+.
T Consensus 308 ~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS
T ss_pred cccccEECCCCCEEEEeCc
Confidence 4566777888887766653
No 346
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=8.2e-05 Score=65.74 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=101.4
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc--------EEEEEcCCeEEEEEcCCCCCccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--------KIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|.++.....++-.|++.|+.+..++.+. .|.-+.+.|+.+ .|++-.++.|.-||.+-.+......
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 34455556678999999999999998876 355566767643 3344478999999998654421111
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
... ..........|.+-. +...+++|+.+|.|++||.-.......+.+...+|..+..+.+|++|++++ +.++.
T Consensus 422 ~q~--kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLl 495 (644)
T KOG2395|consen 422 VQS--KQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLL 495 (644)
T ss_pred eec--cccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEE
Confidence 111 111222345566655 445899999999999999844455566778888999999999999999887 77777
Q ss_pred EEeCC
Q 014125 292 CWDLR 296 (430)
Q Consensus 292 i~d~~ 296 (430)
+.++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 77754
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.19 E-value=0.003 Score=54.30 Aligned_cols=235 Identities=13% Similarity=0.135 Sum_probs=127.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.++.|+.|+.+| +.+++...... ........+|..+...| +-+.|++-+ |+.+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~------------------~~~i~~~~~I~ql~vl~-------~~~~llvLs-d~~l 58 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK------------------PTRILKLSSITQLSVLP-------ELNLLLVLS-DGQL 58 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc------------------ceeEeecceEEEEEEec-------ccCEEEEEc-CCcc
Confidence 578999999998 88988832211 11112223477777744 334444443 5999
Q ss_pred EEEeccCCceeeeeec---------ccccccccceEEEE---ECCCCcEEEEEcCCeEEEEEcCCCCCcc-cccccccCC
Q 014125 151 HLWDATTGLLRCTYRA---------YDAVDEITAAFSVA---FNPTGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKGN 217 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~---------~~~~~~~~~v~~~~---~~~~~~~l~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~ 217 (430)
.++++..-........ .........+..++ -......++++..+.|.+|....+.... .....+
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--- 135 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--- 135 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE---
Confidence 9999876543331110 00111122344444 2233456667777899999987643322 222221
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------------ccCeEEEEEccCCCEEEEEec
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------EGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~ 285 (430)
.-...+.+++|.+ +.++.|.. ....+.|+.++.....+... ..++..+.. +++.+|++.
T Consensus 136 --~lp~~~~~i~~~~---~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 136 --SLPDPPSSIAFLG---NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred --EcCCCcEEEEEeC---CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 1225688899974 36776764 44778888876554333211 123333343 345555543
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|..-.+.|.... ........ -...+..+++. ..||+..+.+ .|.||++.++++++.+..
T Consensus 207 -~~~g~fv~~~G~-~~r~~~i~---W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 207 -DNIGVFVNKNGE-PSRKSTIQ---WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred -cceEEEEcCCCC-cCcccEEE---cCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 333334444332 11111111 12244455553 4588777665 499999999999887764
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.00039 Score=62.94 Aligned_cols=163 Identities=13% Similarity=0.117 Sum_probs=90.7
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
.+..+.++|+|++++++.+|.-.++..... . ....+.-...+|.+ . +.+|+-..+++|.++.--+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~----------r---~k~~G~g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAW----------R---NKAFGSGLSFVWSS-R-NRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTT----------E---EEEEEE-SEEEE-T-S-SEEEEE-TTS-EEEEETTE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCC----------c---ccccCceeEEEEec-C-ccEEEEECCCeEEEEEcCc
Confidence 467899999999999999999999883221 0 11123455678887 3 3577777789999974333
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
.+....+.. ...+..|-. |..|+..+ ++.|.+||+.+... +..+ .-.+|..+.|+++|.+++..+.+
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~-i~~i-----~v~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---GNLLGVKS--SDFICFYDWETGKL-IRRI-----DVSAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp E-TT------SS-EEEEE----SSSEEEEE--TTEEEEE-TTT--E-EEEE-----SS-E-EEEEE-TTSSEEEEE-S--
T ss_pred cccceEEcC-CcccceEEc---CcEEEEEC--CCCEEEEEhhHcce-eeEE-----ecCCCcEEEEECCCCEEEEEeCC-
Confidence 433333332 123444433 88887776 55899999998743 3333 12248899999999999988866
Q ss_pred cEEEEEcCCC-----------CeecccccccCCeeEEEEcCC
Q 014125 335 LVHIYDLQTG-----------KWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 335 ~i~vwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.++|++.+.. ..+..+..-...|.+..|..+
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 5888776532 022222222467888899866
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0029 Score=56.99 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=131.7
Q ss_pred eeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
-..++.++++. ..++...+..|.+.|..+..... ... +-..|...+++++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~----------------~~~---------vG~~P~~~~~~~~~~~v 130 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG----------------SIP---------VGLGPVGLAVDPDGKYV 130 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceee----------------Eee---------eccCCceEEECCCCCEE
Confidence 34678888877 44445556889999865432210 011 11144444558888777
Q ss_pred EEEeC---CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccC
Q 014125 142 ASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 142 ~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
+.+.. ++++.+.|..+++.......... + ..++++|+|..++.. .++.|.+.|........ ... .
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~-~ 200 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSV-G 200 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---ccc-c
Confidence 77655 68899999998888877544332 3 789999999977754 58999999976531110 000 0
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCC--CeEEEEEcCCceeeEEeecccc-CeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
...........+.++|++....++-..+ +.+...|..++.....-..-.. ....+.++|+|+.+++.....+.+.+-
T Consensus 201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEE
Confidence 0111223346788999666566665555 6899999988876655221122 457789999999999987466899999
Q ss_pred eCCCCc
Q 014125 294 DLRKAV 299 (430)
Q Consensus 294 d~~~~~ 299 (430)
|..+..
T Consensus 281 d~~~~~ 286 (381)
T COG3391 281 DGATDR 286 (381)
T ss_pred eCCCCc
Confidence 988764
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0042 Score=55.93 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=131.6
Q ss_pred ceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEE
Q 014125 175 AAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIY 250 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~ 250 (430)
....++.++.+..+... .++.|.+.|...... ......+ .....++++|++..+.++-. .++++.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~-------~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV-------LGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccce-------eeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 34578888888866633 579999999654211 0000011 14678899997766666666 47999999
Q ss_pred EcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 251 REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 251 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
|..+.+.......-..+ ..++++|+|..+++....++.|.+.|.......................+.++|+|.++...
T Consensus 146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 99988887775533344 89999999998888776799999999766532210000011223344568899999876655
Q ss_pred ccC---CcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEeeCC-ceeeecCC
Q 014125 331 GQD---GLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASSSGH-RRFPVDDF 383 (430)
Q Consensus 331 ~~d---g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d-~~~~vw~~ 383 (430)
... +.+...|..++.....-..-.. ....+..+|+|..+...... +.+.+-|.
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 443 5899999998877665221111 46678999999988777443 55555543
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.14 E-value=0.0032 Score=52.21 Aligned_cols=207 Identities=11% Similarity=0.129 Sum_probs=109.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+..++|.|. .+.++++....+.|..++. +|+.+..+..... ...-.+++..++.++++. .++.+.+
T Consensus 22 ~e~SGLTy~pd------~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPD------TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETT------TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCccccEEcCC------CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 45899999442 3557777788888888886 5788877765432 245688888888888877 6899999
Q ss_pred EEcCCCCCcccc--cccccCC-CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC---ceeeE--Eee------cc
Q 014125 199 FDVHRPGRDFEK--YSTLKGN-KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLY--VLH------GQ 264 (430)
Q Consensus 199 ~d~~~~~~~~~~--~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~---~~~~~--~~~------~~ 264 (430)
+++......... ...+... ...++..+-.++|+|.+. .|+++-+..-..+|.++. ...+. ... ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 999654332211 1111111 123456689999999444 555566666666666543 11111 111 12
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc----CCccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS----EHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
...+.+++++|....|+.-+.....|..+|..........+.... ..-...-.++|.++|++.+++ +-+..+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 345789999997665555554889999999544322222221100 111346789999999665544 56666654
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.0036 Score=53.85 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=127.3
Q ss_pred CCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
.++.. ++.+--..+.|.-|+..+++.. .+.... .+.++..-..+..|+++. ..+.+++.+..... .....
T Consensus 33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~------~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~-t~~~~ 103 (307)
T COG3386 33 DPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPG------GFSSGALIDAGGRLIACE-HGVRLLDPDTGGKI-TLLAE 103 (307)
T ss_pred cCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCC------CcccceeecCCCeEEEEc-cccEEEeccCCcee-EEecc
Confidence 34444 5556666788999998766432 233222 223333333344444332 33455555432220 11111
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecC-----------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
... .......+.+...|++ .+.++... -|.|+.+|. .+...+.+..+-..-+.|+||||++.|+.
T Consensus 104 ~~~--~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PED--GLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccC--CCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 111 1122456677888854 34333222 134555554 45666666655566689999999999998
Q ss_pred EecCCCeEEEEeCCC-CceEE--EEeecccCCccceEEEEEcCCCCEEEEEccCC-cEEEEEcCCCCeecccccccCCee
Q 014125 283 GGRKDPYILCWDLRK-AVQVV--YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-LVHIYDLQTGKWISGFQAAADTVN 358 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~-~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~ 358 (430)
+.+..+.|.-|++.. ..... ..........+..-.++...+|.+-+++..+| .|.+|+.+ ++++..+..+...++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 885668888888762 10000 00111122344455677778888776555554 89999998 999988887767888
Q ss_pred EEEEc-CCCcEEEEee
Q 014125 359 GFSFH-PFLPMAASSS 373 (430)
Q Consensus 359 ~~~~~-~~~~~l~s~~ 373 (430)
+++|- |+.+.|...+
T Consensus 259 ~~~FgG~~~~~L~iTs 274 (307)
T COG3386 259 NPAFGGPDLNTLYITS 274 (307)
T ss_pred cceEeCCCcCEEEEEe
Confidence 88886 4445444433
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.04 E-value=0.0024 Score=56.99 Aligned_cols=230 Identities=16% Similarity=0.089 Sum_probs=117.4
Q ss_pred CCCCceEEEE---------eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCC
Q 014125 135 DPTSCVFAST---------TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPG 205 (430)
Q Consensus 135 ~~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~ 205 (430)
|||+++++.. +..+.+.++|+.+++....... . ..+....|+|+|+.++-..++.|.+++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~-----~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P-----PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E-----TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c-----cccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 4566666553 2346799999999765544433 1 26778999999999998889999999876531
Q ss_pred CcccccccccCCCCCC---------CcceEEEEEcCCCCceEEEecCCCe------------------------------
Q 014125 206 RDFEKYSTLKGNKEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQT------------------------------ 246 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~------------------------------ 246 (430)
..............+- -+.-..+-|+|++..++..-..+..
T Consensus 75 ~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~ 154 (353)
T PF00930_consen 75 ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDP 154 (353)
T ss_dssp EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-
T ss_pred eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCc
Confidence 1100000000000000 1123567899955544333322322
Q ss_pred -----EEEEEcCCceeeEE-e----eccccCeEEEEEccCCCEEE-EEecCC---CeEEEEeCCCCceEEEEeecccCCc
Q 014125 247 -----SAIYREDNMELLYV-L----HGQEGGVTHVQFSRDGNYLY-TGGRKD---PYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 247 -----v~~~d~~~~~~~~~-~----~~~~~~i~~~~~~~~~~~l~-~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
+.++|+.+++.... . ......+..+.|.++++.|+ .-...+ -.+.++|..++...........+--
T Consensus 155 np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 155 NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV 234 (353)
T ss_dssp --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce
Confidence 23344444433211 1 11233578899999988333 332122 2466677766554433332222222
Q ss_pred cceEEEEEc-CCC-CEEEEEccCCc--EEEEEcCCCCeecccccccCCeeE-EEEcCCCcEEEE
Q 014125 313 NQRILFDIE-PSG-RHLGTGGQDGL--VHIYDLQTGKWISGFQAAADTVNG-FSFHPFLPMAAS 371 (430)
Q Consensus 313 ~~v~~~~~~-~~~-~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s 371 (430)
..-....+. +++ .+|.....+|. |++++...+. ...+....-.|.. +.|+++++.|.-
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEE
Confidence 222345554 555 45555556665 5566666555 3344444456644 677888775543
No 354
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.04 E-value=0.0029 Score=56.43 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=63.5
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC-CcEEEEeeCCceeeecC---CC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF-LPMAASSSGHRRFPVDD---FE 384 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~~~vw~---~~ 384 (430)
......+.+++.+|++++.|+...-|+|.++|+.++..++.+++-.+.=......++ +.. .. .......... .-
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~-~~-~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR-DR-SNSNSPKSSSRFALF 381 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc-cc-ccccccCCCCcceEE
Confidence 344566888999999999998888899999999999999999876553211111111 000 00 0000000000 00
Q ss_pred ccccccCCCcEEEEeecccccccccCCCCc
Q 014125 385 DLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 385 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
.++-+..-|.|.||.+..+..+..++--.+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 123345678999999988888776654433
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.0025 Score=57.89 Aligned_cols=222 Identities=12% Similarity=0.125 Sum_probs=110.6
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..-....+.++|+|++++.++ ||...|+.....+ ....+.-...+| .+ .
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r----------------------~k~~G~g~~~vw-------~~-~ 79 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR----------------------NKAFGSGLSFVW-------SS-R 79 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTE----------------------EEEEEE-SEEEE--------T-S
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCc----------------------ccccCceeEEEE-------ec-C
Confidence 344578999999999999844 6788888632110 011135556777 44 3
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+.+|+-...+.|.++.--+......++... .+..+-. |.+|....++.|.+||+.+.. .+..+
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~~~~i~~yDw~~~~----~i~~i---- 142 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKSSDFICFYDWETGK----LIRRI---- 142 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEETTEEEEE-TTT------EEEEE----
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEECCCCEEEEEhhHcc----eeeEE----
Confidence 457777778889996432333322333321 2222322 888887777799999998731 11111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-----------eeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. -.+|..+.|++ ++.+++..+. ..+.+++.+.. .....+..-...|.+.+|..+ .++-+. ..
T Consensus 143 ~--v~~vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~ 215 (443)
T PF04053_consen 143 D--VSAVKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN 215 (443)
T ss_dssp S--S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT
T ss_pred e--cCCCcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC
Confidence 1 12388999999 5556666664 45666654322 122233222467899999765 444343 33
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.|+- +..+....... -..++.-+.+.|....+.....|+.|..+.++.
T Consensus 216 -~lkY--l~~Ge~~~i~~-----ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 216 -HLKY--LVNGETGIIAH-----LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEE--EETTEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -eEEE--EEcCCcceEEE-----cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 6765 33443322111 234566677777777888888888888887763
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.02 E-value=0.00057 Score=47.78 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=66.7
Q ss_pred eeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEE
Q 014125 122 VYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFD 200 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d 200 (430)
|.++++... ..+| +.|++|+.|..|++|+-+ ..+..+.... .|.+++-...+++.++-.+|+|-+|+
T Consensus 2 V~al~~~d~----d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~------~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDF----DGDGENELLVGSDDFEIRVFKGD--EIVAEITETD------KVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEec----CCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc------ceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 455655432 3333 689999999999999844 5555555443 78888887777766677899998887
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEc---CCCCceEEEecCCCeEEE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS---PTHTGMLAIGSYSQTSAI 249 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~v~~ 249 (430)
-... .+ +. .....+.++.+. .++..-|++|-.+|.|-+
T Consensus 70 ~~~R--lW------Ri---KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 RSQR--LW------RI---KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred Ccce--ee------ee---ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5331 11 10 111224555443 344557899988888753
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.01 E-value=0.012 Score=54.12 Aligned_cols=248 Identities=19% Similarity=0.153 Sum_probs=126.1
Q ss_pred ceeEEEECcCCceEEEe-cCC----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 62 FLKGIKWSPDGSSFLTS-SED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~-~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+...++||||++||.+ +.. ..+++.|+.+++.+... +.. ..-..+.| .+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---------------i~~---~~~~~~~W-------~~ 179 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---------------IEN---PKFSSVSW-------SD 179 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---------------EEE---EESEEEEE-------CT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---------------ccc---cccceEEE-------eC
Confidence 34468899999988854 233 35999999987432110 000 11122788 66
Q ss_pred CCceEEEEeCCC-----------cEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEE--E--cC-CeEEE
Q 014125 137 TSCVFASTTRDH-----------PIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G--YN-KSVRV 198 (430)
Q Consensus 137 ~~~~l~~~~~dg-----------~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~--~d-~~i~v 198 (430)
+++.|+....+. .|+.|++.+.... ..+...... .....+..++++++++. . .+ ..+.+
T Consensus 180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~---~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP---FWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT---TSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC---cEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 777666554332 3777787766433 333333221 12567889999999883 2 33 45777
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe---cCCCeEEEEEcCCcee---eEEeeccccCeEEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG---SYSQTSAIYREDNMEL---LYVLHGQEGGVTHVQ 272 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~ 272 (430)
.++............+. ....+....+... ++.+++.. ...+.|...++..... ...+..+...+.-..
T Consensus 257 ~d~~~~~~~~~~~~~l~---~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLS---PREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp EECCCTTTSS-SEEEEE---ESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred EeccccCCCcCCcEEEe---CCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 78766311111111111 1111222333333 34344433 2346777778776642 224444555433334
Q ss_pred EccCCCEEEEEecCCC--eEEEEeCC-CCceEEEEeecccCCccceEEEEEcCCCCEEE-EEcc---CCcEEEEEcCCCC
Q 014125 273 FSRDGNYLYTGGRKDP--YILCWDLR-KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG-TGGQ---DGLVHIYDLQTGK 345 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~--~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~---dg~i~vwd~~~~~ 345 (430)
+...+.+|+.....++ .|+++++. ..... ... ....+.+..+...+++..+. +-+. -++++.||+.+++
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~--~~~--~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLDDGKESR--EIP--LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT-TEEEE--EEE--SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEECCEEEEEEEECCccEEEEEECCCCcEEe--eec--CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4445666776654554 57888888 33222 221 12234455555555554432 2222 3568889998887
Q ss_pred e
Q 014125 346 W 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 408 ~ 408 (414)
T PF02897_consen 408 L 408 (414)
T ss_dssp E
T ss_pred E
Confidence 5
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.0043 Score=54.15 Aligned_cols=262 Identities=14% Similarity=0.048 Sum_probs=119.9
Q ss_pred eeeeccccCccCCCCceEEEEeC-CC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEE
Q 014125 124 DFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVF 199 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~ 199 (430)
+-.+.....++.++|+.|+.++. || .+.+.|+.+++..+....... ......++|+++.++ ...+..|+-.
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEE
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCCeEEEE
Confidence 33333444556888977666554 44 577778988877665544322 222456678888776 6667788888
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCC-CCceEEEe----------------------cCCCeEEEEEcCCce
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIG----------------------SYSQTSAIYREDNME 256 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~----------------------~~dg~v~~~d~~~~~ 256 (430)
|+++.... .+. ......+-...|..+ +...++-. -....|.-.|+.+++
T Consensus 108 dL~T~e~~--~vy------~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 108 DLDTLEER--VVY------EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp ETTT--EE--EEE------E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred ECCcCcEE--EEE------ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 98874221 111 112223333444321 22222211 011345666777777
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
....+. ....+..+.|+|....+++-| ..| .-|||-+++......++... .....+..=-|.|||..|.--+
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fC-HEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFC-HEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEE-E-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEE
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEe-ccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEe
Confidence 655554 456788999999877777766 444 23677776655544444332 2344556667899998765432
Q ss_pred -----cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 332 -----QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 332 -----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
.+..|.-+|+.+++...... ......+.-+++|.+++-=+.|.-+.+-+... .....+..|+++++..+.
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~-~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGG-YKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--------------------EEEEEETTTTE
T ss_pred ecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCcccccccc-ceecCCcEEEEeccccCc
Confidence 24457778888876543222 22455666678888887655543333211100 011234566666665444
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.0084 Score=52.38 Aligned_cols=267 Identities=18% Similarity=0.203 Sum_probs=121.4
Q ss_pred eeEEEECcCCceEEEecC-CCe--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 63 LKGIKWSPDGSSFLTSSE-DKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
-+.=+|.+||+.|+.++. ||. +.+.|+.+++.. .+.-..+.......+ +++.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-----------------QLTdg~g~~~~g~~~-------s~~~~ 93 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-----------------QLTDGPGDNTFGGFL-------SPDDR 93 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-----------------E---SS-B-TTT-EE--------TTSS
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-----------------ECccCCCCCccceEE-------ecCCC
Confidence 344567889976665544 554 555566655321 011111111222333 56677
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE--CCCCcEEEEE----cC-------------------C
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----YN-------------------K 194 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~----~d-------------------~ 194 (430)
.++-......++-.|+.+.+....+..... -+-...| +.++..++.. .+ .
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~-----~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDD-----WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TT-----EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcc-----cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 776665667899999999887666666553 2222333 4566666532 11 1
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEEeeccc--c
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYVLHGQE--G 266 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~--~ 266 (430)
.|.-.|+.++.. +. .......+..+.|+|.+..+|+.|-+. ..|.+.+.... ....+..+. .
T Consensus 169 ~i~~idl~tG~~--~~-------v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e 238 (386)
T PF14583_consen 169 RIFTIDLKTGER--KV-------VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGE 238 (386)
T ss_dssp EEEEEETTT--E--EE-------EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTE
T ss_pred eEEEEECCCCce--eE-------EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCc
Confidence 233333333211 00 012234678899999888888876542 24444444332 223332222 3
Q ss_pred CeEEEEEccCCCEEEEEec----CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC--------
Q 014125 267 GVTHVQFSRDGNYLYTGGR----KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-------- 334 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 334 (430)
.+..=-|.|||..|..-+. .+..|.-+|+.+..... +.. ......+-.+++|++++-=+.|.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~ 312 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAG 312 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEE----E-SEEEEEE-TTSSEEEEEE-----------
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEe----CCceeeeEEcCCCCEEEecCCCCCccccccc
Confidence 4555678999987665331 24467778888765432 111 11234566688988876444432
Q ss_pred --------cEEEEEcCCCCeec---------ccccccC-CeeEEEEcCCCcEEEEeeC
Q 014125 335 --------LVHIYDLQTGKWIS---------GFQAAAD-TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 335 --------~i~vwd~~~~~~~~---------~~~~~~~-~v~~~~~~~~~~~l~s~~~ 374 (430)
-|+++++..++... .+.++.. .=....|+||+++++-.|.
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp --------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred cceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 46677877655421 1111111 1246799999997776664
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=0.0019 Score=52.16 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=89.5
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
..-++...+++.|+..+.+.-.|..+++...... -...|.+-+.- -|++++.++ ..|.+++.+..++.+.......
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GC-y~g~lYfl~~~tGs~~w~f~~~- 92 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGC-YSGGLYFLCVKTGSQIWNFVIL- 92 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEE-ccCcEEEEEecchhheeeeeeh-
Confidence 3445567789999999999999999998776543 22334433322 467889999 9999999999998655433221
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
..--......+++..+..|+.|+..+..|..+...+...+-..+.-.+-+..|
T Consensus 93 ---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 93 ---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred ---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 11112344578899999999999999999999888887664433333334444
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=7.2e-05 Score=68.31 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=93.6
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
+++. ...+++.|+..|.+++|+...++.... ..+-.+.+..+..+++..++++++ ..|.|.++-+.........+..
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt-~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT-ASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc-CCceEEeehhhccCCCcceeec
Confidence 3444 566999999999999999877654332 223345666777888888888888 9999999988764333222222
Q ss_pred --ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC----CeecccccccCCeeEEEEc
Q 014125 308 --SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG----KWISGFQAAADTVNGFSFH 363 (430)
Q Consensus 308 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~ 363 (430)
...|...|++++|++++..+++|...|.|..-.+++. ...+.+-...+.|-.+...
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2346889999999999999999999999999888872 1122222334556666554
No 362
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00016 Score=66.11 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=99.0
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
.+.--+++..+++++.| .-|.+++|+-..+.. ......+..+.+..+..++ ...++|.|+..|.|.++-+.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-------~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-------RKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhh-------hcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhh
Confidence 34444566678888855 789999998765321 1111233445667777888 77799999999999999877
Q ss_pred Cceee-----EEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE
Q 014125 254 NMELL-----YVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 254 ~~~~~-----~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 327 (430)
...+. ... ..|...|++++|++++..+++|. ..|+|.+-.+.................+.|..+.... +.+|
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LL 184 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLL 184 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceeh
Confidence 64321 111 23677899999999999999999 8999998887762111111111123455666666543 3333
Q ss_pred EEEccCCcEEEEEcCCC
Q 014125 328 GTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~ 344 (430)
++... +-.+++++.+
T Consensus 185 VStl~--r~~Lc~tE~e 199 (726)
T KOG3621|consen 185 VSTLT--RCILCQTEAE 199 (726)
T ss_pred Hhhhh--hhheeecchh
Confidence 33322 2334555543
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0081 Score=52.92 Aligned_cols=213 Identities=12% Similarity=0.150 Sum_probs=113.4
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeC----------CCcEEEEeccCC-ceeeeeecccccccccceEEEEEC
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----------DHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFN 182 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 182 (430)
..+...+.+.+++.......-.....+|++|.. .|.|.++++... .....+.........++|++++--
T Consensus 18 ~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 18 FELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF 97 (321)
T ss_dssp EEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE
T ss_pred EECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh
Confidence 344445566666543321100012467777643 288999999884 111111111111223478888755
Q ss_pred CCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEe
Q 014125 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVL 261 (430)
Q Consensus 183 ~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~ 261 (430)
+..|+++.++.|.+|++.... .+..... ......+.++.... +++++|.....+.++..+. ...+..+
T Consensus 98 --~~~lv~~~g~~l~v~~l~~~~-~l~~~~~-----~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 98 --NGRLVVAVGNKLYVYDLDNSK-TLLKKAF-----YDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp --TTEEEEEETTEEEEEEEETTS-SEEEEEE-----E-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred --CCEEEEeecCEEEEEEccCcc-cchhhhe-----ecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 445888888999999998754 1111111 11122567776653 4899999888888875443 2222222
Q ss_pred e--ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC------ce-EEEEeecccCCccceEEE---EEcCC--C---
Q 014125 262 H--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA------VQ-VVYKLYRSSEHTNQRILF---DIEPS--G--- 324 (430)
Q Consensus 262 ~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~------~~-~~~~~~~~~~~~~~v~~~---~~~~~--~--- 324 (430)
. .....++++.|-++++.++++. .+|.+.++..... .. ....... ......|+++ ++.|. +
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~~~~~~~~~~~~L~~~~~-f~lg~~v~~~~~~~l~~~~~~~~~ 244 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNPEIPNSRDGDPKLERISS-FHLGDIVNSFRRGSLIPRSGSSES 244 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-SS-SSTTTTTTBEEEEEE-EE-SS-EEEEEE--SS--SSSS-T
T ss_pred EecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECCCCcccccccccceeEEE-EECCCccceEEEEEeeecCCCCcc
Confidence 2 2345688999987777888888 9999999987631 11 1111111 1223456666 44451 2
Q ss_pred ---CEEEEEccCCcEEEE
Q 014125 325 ---RHLGTGGQDGLVHIY 339 (430)
Q Consensus 325 ---~~l~~~~~dg~i~vw 339 (430)
..++.++.+|.|.+.
T Consensus 245 ~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 245 PNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TEEEEEEEEETTS-EEEE
T ss_pred cccceEEEEecCCEEEEE
Confidence 247788889988843
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.95 E-value=0.0099 Score=51.09 Aligned_cols=239 Identities=12% Similarity=0.067 Sum_probs=131.1
Q ss_pred CCceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc-cc
Q 014125 137 TSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS-TL 214 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~-~~ 214 (430)
.++.|+.|..+| +.+++... ......... ..|..+...|+-..+++=.|+.+.++++..-........ ..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-------~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL-------SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec-------ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccc
Confidence 577899999999 99999832 222222221 158888888888888876779999999876332221100 00
Q ss_pred -c----CCCCCCCcceEEEE-EcCCCCceEEEecCCCeEEEEEcCCc-----eeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 215 -K----GNKEGQAGIMSAIA-FSPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 215 -~----~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~v~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
. .........+..++ -....+...++.....+|.+|..... +..+.+. -...+.+++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence 0 00112223344444 11223334444444568888876653 3445554 34778999997 5567777
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecc--------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-cccccc
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRS--------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS-GFQAAA 354 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~ 354 (430)
. .+...+.|+.++.......... .....++..+... ++.+|++- |..-.+.|. .|++.+ ..-.-.
T Consensus 155 ~--~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~ 228 (275)
T PF00780_consen 155 T--SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS 228 (275)
T ss_pred e--CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC
Confidence 6 4557888998654322111000 0112234344433 45666653 333333333 454433 111122
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
..+.++++. .++|+... ++.|.||++..+++++.+.+.
T Consensus 229 ~~p~~~~~~--~pyli~~~------------------~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYS--SPYLIAFS------------------SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEE--CCEEEEEC------------------CCEEEEEECcCCcEEEEEECC
Confidence 344555553 34555553 466999999999888877754
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.015 Score=52.85 Aligned_cols=184 Identities=9% Similarity=0.133 Sum_probs=87.5
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccc----cceEEEEECCCCcEEEEEcCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI----TAAFSVAFNPTGTKIFAGYNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~d~~ 195 (430)
+.+.++.| +. ...|+....||.++++|+... . .+......... ..+....+...|-.+++ .++.
T Consensus 81 ~~iv~~~w-------t~-~e~LvvV~~dG~v~vy~~~G~-~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt-~~~~ 148 (410)
T PF04841_consen 81 GRIVGMGW-------TD-DEELVVVQSDGTVRVYDLFGE-F--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT-GNNR 148 (410)
T ss_pred CCEEEEEE-------CC-CCeEEEEEcCCEEEEEeCCCc-e--eechhhhccccCcccccccccccCCCCEEEEC-CCCe
Confidence 67888888 44 456777789999999998633 3 22222111111 01222233335533333 3444
Q ss_pred EEEEEcCCCCCcccccccccCCC---CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNK---EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.+..-.......+......... ...........++. .....+....++.+.+.+....+. +. ..+++..++
T Consensus 149 ~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ia 223 (410)
T PF04841_consen 149 FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIA 223 (410)
T ss_pred EEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEE
Confidence 43332211110000000110000 01111000122333 233344444455566444332211 22 246899999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG 324 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 324 (430)
.||+|++++.-. .+|.+.+....-.+... ... .........+.|.-+.
T Consensus 224 vSpng~~iAl~t-~~g~l~v~ssDf~~~~~-e~~--~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 224 VSPNGKFIALFT-DSGNLWVVSSDFSEKLC-EFD--TDSKSPPKQMAWCGND 271 (410)
T ss_pred ECCCCCEEEEEE-CCCCEEEEECcccceeE-Eee--cCcCCCCcEEEEECCC
Confidence 999999999988 88999888764432221 211 1223445566666543
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=2.4e-05 Score=43.84 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=32.3
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEe
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~ 88 (430)
...+..|...|+++.|+|++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345668899999999999999999999999999996
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0001 Score=66.53 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=77.0
Q ss_pred cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE-EEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
..+.-+.|+| ...++|.+..+|.|.++.++ .+.+.++..+...++ +++|.|||+.|++|- .||+|++.|+.++...
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~-kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF-KDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe-cCCeEEEEEccCCCce
Confidence 3578899999 78899999999999999998 777888886777777 999999999999999 9999999999988655
Q ss_pred EEEeecccCCccceEEEEEcC
Q 014125 302 VYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~ 322 (430)
.... ......|.++-|++
T Consensus 98 ~~~~---~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFL---FSVETDISKGIWDR 115 (665)
T ss_pred eccc---cccccchheeeccc
Confidence 4321 23455677777764
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.86 E-value=0.026 Score=53.14 Aligned_cols=211 Identities=11% Similarity=0.070 Sum_probs=111.9
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-.|..+++..-........ .. ....+........ .-.+..++.++.|+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~----~~---------~~~~~~~~~~rg~--av~~~~v~v~t~dg~l~ 133 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPD----DV---------IPVMCCDVVNRGV--ALYDGKVFFGTLDARLV 133 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCc----cc---------ccccccccccccc--eEECCEEEEEcCCCEEE
Confidence 456777777888888898888654332211000 00 0000000000000 00234677788899999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCcccccccccC---------
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKYSTLKG--------- 216 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~--------- 216 (430)
-.|..+|+.+.......... ...+.+--.--++..++.. .+|.|.-+|.+++...+........
T Consensus 134 ALDa~TGk~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred EEECCCCCEEeecccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 99999999887765432110 0011111011144444432 2578888888876554432211110
Q ss_pred ----C-----------CCCCCcceEEEEEcCCCCceEEEecCC-----C-----------eEEEEEcCCceeeEEeeccc
Q 014125 217 ----N-----------KEGQAGIMSAIAFSPTHTGMLAIGSYS-----Q-----------TSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 217 ----~-----------~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g-----------~v~~~d~~~~~~~~~~~~~~ 265 (430)
. ..+....-..+++.| ..+++..+..+ + .|.-.|+++++....++...
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~ 291 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP 291 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC
Confidence 0 001112223457777 45566555422 2 57778899999887776432
Q ss_pred cCeE---------EEEEccCCC---EEEEEecCCCeEEEEeCCCCce
Q 014125 266 GGVT---------HVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 266 ~~i~---------~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~ 300 (430)
..+. -+....+|+ .++.+. .+|.+++.|.++++.
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHAD-RNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeC-CCceEEEEECCCCce
Confidence 2221 122334665 566666 999999999998854
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.78 E-value=0.035 Score=52.28 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 323 SGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 323 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
.+.+++.++.+|.++.+|.++|+.+..++..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3557778888999999999999999887654
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.015 Score=48.18 Aligned_cols=181 Identities=10% Similarity=0.134 Sum_probs=109.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.|-...|.++.|+|+.+.|++......-.||=...|+.....+.. .+ +.--.+.| ..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-------------g~---~DpE~Iey-------ig 138 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-------------GF---SDPETIEY-------IG 138 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-------------cc---CChhHeEE-------ec
Confidence 344555999999999999988888777777765556544332221 11 12223333 44
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeee-----eecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCT-----YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
++.+.++--+++.+.++.+..+..... ++...........-.++|.|....+... ..+-+.||.+.........
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence 566777777788888888776533222 2222221223356689999999888865 6666777777643222211
Q ss_pred ccccc--CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe
Q 014125 211 YSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261 (430)
Q Consensus 211 ~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 261 (430)
..... ....-.-..++++.|++..+.+++-+.+++.+.-.|.. +.++..+
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 11110 00011124578899999888889999999999888876 4434333
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.63 E-value=0.025 Score=53.68 Aligned_cols=185 Identities=13% Similarity=0.083 Sum_probs=96.6
Q ss_pred ceEEEEECCCCcEEEEEc-------CC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--
Q 014125 175 AAFSVAFNPTGTKIFAGY-------NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-- 243 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~-------d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 243 (430)
.+.+.+++|+|+.++... |. .|.+++. ++.. .. + ..+. ..+.-.|+|++. .+++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-~~---l---t~g~--~~t~PsWspDG~-~lw~v~dg~ 418 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-VQ---V---LEGH--SLTRPSWSLDAD-AVWVVVDGN 418 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-ee---e---ecCC--CCCCceECCCCC-ceEEEecCc
Confidence 567899999999888332 33 4444453 2211 11 1 1111 266778999544 3333321
Q ss_pred ----------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE---EeCCCCceEEEEeecc-c
Q 014125 244 ----------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC---WDLRKAVQVVYKLYRS-S 309 (430)
Q Consensus 244 ----------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i---~d~~~~~~~~~~~~~~-~ 309 (430)
.+.+.+.+++.+.... ...+.|..+.|||||..++... ++.|.+ -....+...+...... .
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeec
Confidence 2334444444433322 2346799999999999999876 577777 3433332111111111 1
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeeccccc--ccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQA--AADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
.....+..+.|.+++.++ ++..++...+|.+.- |.....+.. ...++.+++=+++ .+.....++.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 223345789999998855 555554444554431 222222222 2446667766653 233444444333
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.63 E-value=0.00024 Score=39.50 Aligned_cols=38 Identities=50% Similarity=0.781 Sum_probs=32.7
Q ss_pred eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
+....+..|...|.++.|++.+..+++++ .|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 44556667888999999999999999998 999999996
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00044 Score=62.61 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=72.2
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceE-EEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
..+..+.|+|.-..+|.+. .+|.|.+..+. ..+. .....+...++ +++|.|||+.||.|-.||+|++.|+.++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t-~~gelli~R~n-~qRl----wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRT-EKGELLIHRLN-WQRL----WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheec-cCCcEEEEEec-ccee----EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 4678899999999999999 99999998887 3222 22233445555 9999999999999999999999999999
Q ss_pred Ceecccc-cccCCeeEEEEcC
Q 014125 345 KWISGFQ-AAADTVNGFSFHP 364 (430)
Q Consensus 345 ~~~~~~~-~~~~~v~~~~~~~ 364 (430)
..+..+. .-...|.++-|.+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 8877632 2344677777763
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.029 Score=46.33 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=108.3
Q ss_pred ceEEEEECCCCcEEE-EE-cC-CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----CCe
Q 014125 175 AAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQT 246 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 246 (430)
....++|+|....-+ .. .- -...++|......+.........++.+|. .|+|++. +|...-. -|.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~-~LYATEndfd~~rGV 141 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGR-LLYATENDFDPNRGV 141 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCc-EEEeecCCCCCCCce
Confidence 344688888765544 23 33 34678888775544333333333444443 6899554 5544332 377
Q ss_pred EEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEec-----------------CCCeEEEEeCCCCceEEEEeecc
Q 014125 247 SAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-----------------KDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 247 v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
|-+||.+.+ ..+..+..|.-.-..+.+.+||+.++.+.. +...+.+.|..++....+.....
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 999998854 456677788777889999999998887651 11123333333332111111111
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCc-----EEEEEcCCCCeeccccc-------ccCCeeEEEEcCCCcEEEEeeC-C
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGL-----VHIYDLQTGKWISGFQA-------AADTVNGFSFHPFLPMAASSSG-H 375 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~-d 375 (430)
..+...+..++..+||+.++.+-..|. -.|=-...++++.-+.. ...-|-+|+.+.+..+++..+- -
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G 301 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG 301 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence 134456777888888876665443321 11111233444443332 2234667777655444444333 3
Q ss_pred ceeeecCC
Q 014125 376 RRFPVDDF 383 (430)
Q Consensus 376 ~~~~vw~~ 383 (430)
+...+||.
T Consensus 302 N~~vi~da 309 (366)
T COG3490 302 NRAVIWDA 309 (366)
T ss_pred CeEEEEEc
Confidence 34445543
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.017 Score=54.85 Aligned_cols=193 Identities=11% Similarity=0.104 Sum_probs=98.5
Q ss_pred CceeEEEECcCCceEEEec------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 61 NFLKGIKWSPDGSSFLTSS------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
..+.+.++||||+.+|..- .|+.-.||-...+.. . .....+.....-.|
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----------------~--~~lt~g~~~t~PsW------- 404 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----------------A--VQVLEGHSLTRPSW------- 404 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----------------c--eeeecCCCCCCceE-------
Confidence 4678899999999887665 244334443221110 0 11111223556667
Q ss_pred CCCCceEEEEeCC------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcC
Q 014125 135 DPTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 135 ~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~ 202 (430)
+|+|..+++.... +.+.+.++..+.... . ....|..+.|+|||..++.-.++.|.+--+.
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~-----~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vv 476 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---R-----VPGPISELQLSRDGVRAAMIIGGKVYLAVVE 476 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---c-----cCCCcCeEEECCCCCEEEEEECCEEEEEEEE
Confidence 6777766666432 233333443332221 0 1127899999999999985556788774443
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEE--EcCCceeeEEeec--cccCeEEEEEccCCC
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHG--QEGGVTHVQFSRDGN 278 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~--d~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 278 (430)
......................+..+.|.+ ++.+ +++..++...+| ++.... ...+.. ...++.+++-++.
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~-- 551 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS-- 551 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--
Confidence 311111111111111122233467889998 4444 455554444444 444222 112122 2456777777763
Q ss_pred EEEEEecCCCeEEE
Q 014125 279 YLYTGGRKDPYILC 292 (430)
Q Consensus 279 ~l~~~~~~d~~i~i 292 (430)
.++++. .++.+.+
T Consensus 552 ~iyv~~-~~g~~~l 564 (591)
T PRK13616 552 TVYVTD-ARAVLQL 564 (591)
T ss_pred eEEEEc-CCceEEe
Confidence 455555 5665544
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.0044 Score=50.87 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=106.2
Q ss_pred EECcCCceEEEecCC-----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 67 KWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 67 ~~sp~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.|||||.+|...-.| |.|-|||...+-.. .--...++-.-..+.| .+||+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr----------------vgE~~t~GiGpHev~l-------m~DGrtl 176 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR----------------VGEFSTHGIGPHEVTL-------MADGRTL 176 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccce----------------ecccccCCcCcceeEE-------ecCCcEE
Confidence 589999999865443 77999998743110 0011122333344555 6688877
Q ss_pred EEEeC------------------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCC----eEEE
Q 014125 142 ASTTR------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVRV 198 (430)
Q Consensus 142 ~~~~~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~----~i~v 198 (430)
+.+.. .-++.+.|..+|..+.+...... .+.-.|..++..+||+.++++ ..| .--+
T Consensus 177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~-l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL 255 (366)
T COG3490 177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS-LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL 255 (366)
T ss_pred EEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh-hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcc
Confidence 76532 22344555555655554443322 122367788888888777754 221 1111
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
.-...++.+++.+.........-...|-+++.+.+.+...+++-..+...+||..++..+..-.- ..+..++- ...
T Consensus 256 vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~--~~~ 331 (366)
T COG3490 256 VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAA--AKG 331 (366)
T ss_pred eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--ccccccee--ccC
Confidence 11122233222222111111222345778888875565555666666788999999987654331 12233333 333
Q ss_pred EEEEEecCCCeEEEEe
Q 014125 279 YLYTGGRKDPYILCWD 294 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d 294 (430)
-+++++ .+|.+.++.
T Consensus 332 gf~vss-g~G~~~~~s 346 (366)
T COG3490 332 GFAVSS-GQGRIIFYS 346 (366)
T ss_pred ceEEec-CCceEEecc
Confidence 355555 688888874
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.014 Score=40.91 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
|..++.+.|++|+.|..|++|+-. +.+..+. ....|++++-...+ .++.+- .+|+|-+|+-... . .+..
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~-~F~Y~l-~NGTVGvY~~~~R--l----WRiK 78 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG-RFAYAL-ANGTVGVYDRSQR--L----WRIK 78 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC-EEEEEe-cCCEEEEEeCcce--e----eeec
Confidence 344566899999999999999764 5555655 45678888877664 466666 8999999986432 1 2222
Q ss_pred CCccceEEEEE-cCC--C-CEEEEEccCCcEEE
Q 014125 310 EHTNQRILFDI-EPS--G-RHLGTGGQDGLVHI 338 (430)
Q Consensus 310 ~~~~~v~~~~~-~~~--~-~~l~~~~~dg~i~v 338 (430)
. ...+.++.+ ..+ | .-|++|=.+|.|-+
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 223444443 333 3 35888888887743
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.52 E-value=0.058 Score=47.84 Aligned_cols=220 Identities=12% Similarity=0.149 Sum_probs=92.2
Q ss_pred CceeEEEEC-----------cCCceEEEec-CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 61 NFLKGIKWS-----------PDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 61 ~~v~~~~~s-----------p~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
+.....-|+ .+.++|+..+ ..+.|.|.|+.+......+.... ... ......-....+.+.|
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvI--e~~-ev~~k~g~s~PHT~Hc---- 137 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVI--EPE-EVFEKTGLSRPHTVHC---- 137 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE---HH-HHHHHH-EEEEEEEEE----
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeee--CHH-HHHhhcCCCCCceeee----
Confidence 466666665 2456777776 57889999998543221111100 000 0000000011112222
Q ss_pred cccCccCCCCceEEEEeC------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-----------
Q 014125 129 PHMSASDPTSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----------- 191 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------- 191 (430)
-|+|..++++-. -|-+.++|-++-+.......... ...--+.+-|.|..+.++++
T Consensus 138 ------lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~--~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 138 ------LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG--PQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp -------SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T--T------EEEETTTTEEEE-B---HHHHTT-
T ss_pred ------cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC--CCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 457878877522 24577888777666666554322 11234567778877777653
Q ss_pred ----------cCCeEEEEEcCCCCCcccccccccCCCCCC-CcceEEEEEc--CCCCceEEEecCCCeEEEEEc-CCce-
Q 014125 192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFS--PTHTGMLAIGSYSQTSAIYRE-DNME- 256 (430)
Q Consensus 192 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~~~dg~v~~~d~-~~~~- 256 (430)
...++.+||+..... .+.+. -+. ......+.|. |....-++.+.-.++|..|-. ..++
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~----~Q~id---Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKL----LQTID---LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW 282 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEE----EEEEE---S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred CChhHhhcccccCeEEEEECCCCcE----eeEEe---cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence 135899999987311 11111 111 1234556664 423333444445666666543 3332
Q ss_pred ---eeEEeecc-----------------ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE
Q 014125 257 ---LLYVLHGQ-----------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 257 ---~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
.+..+... ..-|+.|..|.|.++|+.++...|.|+.||+.....+.
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 12222111 24578999999999999999999999999998875543
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.009 Score=53.43 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=94.9
Q ss_pred eEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE-------EEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY-------LYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
+|..+.....++-.|+..|+.+.....+.. |+-+.+.|+.+. -++|- .|..|.-||.|-...........+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeeeeecc
Confidence 445566667899999999999999886655 788888887542 23455 688899999985433111111111
Q ss_pred --CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 310 --EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 310 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.......|++-..+| +|++||.+|.|++||--.......+++...+|..+..+.+|++|+..+..-
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence 123344555555544 899999999999999743334456778888999999999999887766443
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.48 E-value=0.036 Score=44.36 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=68.3
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEe--CCCCc----eEEEEeecccCC-ccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWD--LRKAV----QVVYKLYRSSEH-TNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d--~~~~~----~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
--+.++|+.+.+.++...+.+-.|.-|| ..++. ..+..+...... .-..-.++...+|.+.++.-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 3467899988888888776777887788 33331 122222221111 1112235556678888888888999999
Q ss_pred EcCCCCeecccccccCCeeEEEEcC
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
|..+|+.+.+++-....|++++|--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999998889999999974
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.46 E-value=0.13 Score=50.13 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=79.7
Q ss_pred EEEEEcCCceeeEEeec--cc--cCeEEEEEccC-CCEEEEEec---------CCCeEEEEeCCCCceEEEEeecccCCc
Q 014125 247 SAIYREDNMELLYVLHG--QE--GGVTHVQFSRD-GNYLYTGGR---------KDPYILCWDLRKAVQVVYKLYRSSEHT 312 (430)
Q Consensus 247 v~~~d~~~~~~~~~~~~--~~--~~i~~~~~~~~-~~~l~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~ 312 (430)
++++|-++.+.+...+- .+ ..|.++.|..| +.++++|.. ..|.|.+|.+...... ..... ..-.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~~v~e-~~v~ 829 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-ELVAE-TVVK 829 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-eeeee-eeec
Confidence 55555555444332221 11 24556668777 667777652 2477888877663222 11111 2233
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
+.+.++.. -+|++||. -+..|++|+..+.+.++.-..+..++..+...-.|..++.|.--+.+.+
T Consensus 830 Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 830 GAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred cceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 44444432 24676664 4557999999999888777778888888888888888888877666654
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.43 E-value=0.052 Score=45.00 Aligned_cols=187 Identities=11% Similarity=0.201 Sum_probs=111.9
Q ss_pred CCceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
......+.|..+|.++-+.|.-| .|+.+|+.+++.......... .... =....+..++.+.|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-----~FgE-Git~~~d~l~qLTW---------- 107 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-----YFGE-GITILGDKLYQLTW---------- 107 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------EE-EEEEETTEEEEEES----------
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----ccce-eEEEECCEEEEEEe----------
Confidence 34456788878888888888766 699999998865433222110 0000 00112345555655
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.++...+||..+-+.+..+.... .-+.++ .+++.|+.+ ....|+++|..+-.. ...+.-
T Consensus 108 --------k~~~~f~yd~~tl~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~----~~~i~V 167 (264)
T PF05096_consen 108 --------KEGTGFVYDPNTLKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE----VRTIQV 167 (264)
T ss_dssp --------SSSEEEEEETTTTEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE----EEEEE-
T ss_pred --------cCCeEEEEccccceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCcccce----EEEEEE
Confidence 67889999999888888776543 556677 456666644 778899999764211 111111
Q ss_pred CCC-CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec------------c---ccCeEEEEEccCCCEE
Q 014125 217 NKE-GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG------------Q---EGGVTHVQFSRDGNYL 280 (430)
Q Consensus 217 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~------------~---~~~i~~~~~~~~~~~l 280 (430)
... ..-..++.+.+- ++.++|=.-....|...|..+|+....+.. + ..-.+.||++|....|
T Consensus 168 ~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred EECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 111 112346667776 455666666778888889999987766531 0 2347899999998888
Q ss_pred EEEe
Q 014125 281 YTGG 284 (430)
Q Consensus 281 ~~~~ 284 (430)
+++|
T Consensus 246 ~vTG 249 (264)
T PF05096_consen 246 FVTG 249 (264)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8887
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00055 Score=54.12 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=83.1
Q ss_pred eEEEecCCCeEEEEEcCCceeeEEe-eccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 237 MLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
.+..-+.+|.|+-++++..+....- .-+... . ..-.-+..+++++ .+|.|++|............ ......+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~--~v~~~~~~~~vG~-~dg~v~~~n~n~~g~~~d~~---~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-Q--RVVTASAKLMVGT-SDGAVYVFNWNLEGAHSDRV---CSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc-e--eecccCceEEeec-ccceEEEecCCccchHHHhh---hcccccc
Confidence 3444566788887777654322111 112222 1 1122345688888 99999999887332111010 1111222
Q ss_pred -EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCc
Q 014125 316 -ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENC 394 (430)
Q Consensus 316 -~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~ 394 (430)
..+.--.++.+..++..||.|+.|++..++.+.....|.. -++..+++.+.++.+.+|+. ++|..
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~--------~~~e~~ivv~sd~~i~~a~~------S~d~~ 170 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF--------ESGEELIVVGSDEFLKIADT------SHDRV 170 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccC--------CCcceeEEecCCceEEeecc------ccchh
Confidence 2232233456889999999999999998888777776763 23445555555555555543 45777
Q ss_pred EEEEeecc
Q 014125 395 VSVWSFLY 402 (430)
Q Consensus 395 i~~w~~~~ 402 (430)
++.|++..
T Consensus 171 ~k~W~ve~ 178 (238)
T KOG2444|consen 171 LKKWNVEK 178 (238)
T ss_pred hhhcchhh
Confidence 77777654
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.33 E-value=0.041 Score=50.51 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCceEEEecCCC----eEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC----------CCe
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK----------DPY 289 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------d~~ 289 (430)
.+..+.++|++..++++-+..| .++++|+.+++.+...-.. .....+.|.++++.|+..... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3557889996554544544444 5999999999776532211 122349999998887766522 224
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---C-CcEEEEEcCCC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---D-GLVHIYDLQTG 344 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~vwd~~~~ 344 (430)
|+.|.+.+....-..++...........+..++++++|+.... + ..+++.++..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 7888888765442333332333333667889999999775433 2 35888888875
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.26 E-value=0.022 Score=51.89 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=74.0
Q ss_pred ceEEEEECCCC-----cEEEEEcCCeEEEEEcCCCCCcc-ccc-ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeE
Q 014125 175 AAFSVAFNPTG-----TKIFAGYNKSVRVFDVHRPGRDF-EKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS 247 (430)
Q Consensus 175 ~v~~~~~~~~~-----~~l~~~~d~~i~v~d~~~~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 247 (430)
.|..+.|.|-+ .+||+-..+.|.||.+....... +.. ...-...+...--...+.|+| ...+|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCcee
Confidence 68899999863 56777889999999986422111 000 000000011112234678999 66677766655555
Q ss_pred EEEEcCCc--eeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 248 AIYREDNM--ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 248 ~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+++++.. +....++ ..+-|.|.+|.+||+.|+++-+..=.-++||-..
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 55665533 3333443 4578999999999998887763445567887543
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.20 E-value=0.038 Score=46.59 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe-CCCCce
Q 014125 224 IMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD-LRKAVQ 300 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d-~~~~~~ 300 (430)
.+.+.++++++..+.++.. ....++++.. +....... ....+....|++++...++.. .+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~-~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDD-GSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEc-CCCceEEEEecCCCcc
Confidence 5888999996665555552 3344555543 33322221 234788899999987666655 566666663 233322
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEc---cCCcEEEEEcC---CC------CeecccccccCCeeEEEEcCCCcE
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGG---QDGLVHIYDLQ---TG------KWISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~---~~------~~~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
....... ......|..+.+||||..++... .++.|.+--+. .+ .++.........+.++.|.+++.+
T Consensus 101 ~~~~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 2212211 11122899999999998876555 35777777553 23 111222233457899999999998
Q ss_pred EEEeeCC
Q 014125 369 AASSSGH 375 (430)
Q Consensus 369 l~s~~~d 375 (430)
++.+...
T Consensus 180 ~V~~~~~ 186 (253)
T PF10647_consen 180 VVLGRSA 186 (253)
T ss_pred EEEeCCC
Confidence 8777653
No 387
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.20 E-value=0.16 Score=45.79 Aligned_cols=148 Identities=7% Similarity=0.074 Sum_probs=88.5
Q ss_pred CCceEEEEeCCCcEEEEeccCCce-----eeeeecccccccccceEEEEEC---C--CCcEEEEEcCCeEEEEEcCCCCC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAFN---P--TGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+...+++|+..|.++||+...+.. +.+.+.. .+|..+..- + +...|++=.-..+.+|.+...+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~------~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK------DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecC------CcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 456899999999999999865431 1111111 266666542 2 23455566778888998854322
Q ss_pred c------ccccccccCCCCCCCcceEEEEEcCCC----CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 207 D------FEKYSTLKGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 207 ~------~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
. ..........+ ......++.-|.+ ..++.+=+.||.+.+|+-+.......+.. .--...+.|.+.
T Consensus 110 ~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPR 185 (418)
T ss_pred CcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeec
Confidence 2 11000111111 1123333333322 46788889999999999876554444443 222345778888
Q ss_pred CCEEEEEecCCCeEEEEeC
Q 014125 277 GNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~ 295 (430)
-..+++++ .+..+..|..
T Consensus 186 tDsfvt~s-ss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTAS-SSWTLECYKY 203 (418)
T ss_pred CCEEEEec-CceeEEEecH
Confidence 88888888 7888988875
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.18 E-value=0.11 Score=43.77 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=88.8
Q ss_pred ceeEEEECcCCceEEEec---CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSS---EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.+.+.++|+||+.+|... ....++++....... ....+..+..-.| ++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~--------------------~~~~g~~l~~PS~-------d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR--------------------PVLTGGSLTRPSW-------DPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce--------------------eeccCCccccccc-------cCCC
Confidence 588999999999877665 334455554432210 0002235556666 6677
Q ss_pred ceEEEEeCCCcEEEEe-ccCCceee-eeecccccccccceEEEEECCCCcEEEE-E---cCCeEEEEEcCCCCCc-cccc
Q 014125 139 CVFASTTRDHPIHLWD-ATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFA-G---YNKSVRVFDVHRPGRD-FEKY 211 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd-~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~---~d~~i~v~d~~~~~~~-~~~~ 211 (430)
...+....+...+++. ..++.... ....... . ..|..+.++|||..++. . .++.|.+--+...... ....
T Consensus 78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CEEEEEcCCCceEEEEecCCCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 7777777677677774 33333221 1221111 0 17899999999998883 2 3688888877654333 1111
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecC-CCeEEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAI 249 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~ 249 (430)
.............++.+.|.+ +..+++.+.. ++.+..
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ccceEecccccCcceeeeecC-CCEEEEEeCCCCCceeE
Confidence 111112223346789999999 4445555444 343433
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.12 E-value=0.11 Score=49.36 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=110.6
Q ss_pred CCceEEEEeCCC------cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC------CeEEEEEcCCC
Q 014125 137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN------KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d------~~i~v~d~~~~ 204 (430)
.+.+++.|+.++ .+..+|..++........... ..-.+++...+.-++++|.+ .++..||....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~----r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP----RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc----cccccEEEECCEEEEEccccCCCcccceEEEecCCCC
Confidence 355677777763 578889888755444333221 12334555444333345566 45777887764
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe-----EEEEEcCCceee--EEeeccccCeEEEEEccCC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNMELL--YVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~ 277 (430)
. +.....+.... .......+ ++.+.++|+.||. |..||..+.+-. ..+.........+.+ +|
T Consensus 360 ~--W~~~a~M~~~R----~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g 428 (571)
T KOG4441|consen 360 Q--WTPVAPMNTKR----SDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GG 428 (571)
T ss_pred c--eeccCCccCcc----ccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CC
Confidence 3 33222221111 11222222 6778999998864 777887765432 222211112222222 55
Q ss_pred CEEEEEecCCC------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCc-----EEEEEcCCCCe
Q 014125 278 NYLYTGGRKDP------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-----VHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~ 346 (430)
...++|| .++ .+..||..+..-.... .......... ++ .-++.+.+.|+.|+. |..||..+.+.
T Consensus 429 ~iYi~GG-~~~~~~~l~sve~YDP~t~~W~~~~--~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 429 KLYIIGG-GDGSSNCLNSVECYDPETNTWTLIA--PMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred EEEEEcC-cCCCccccceEEEEcCCCCceeecC--Ccccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 5555555 443 5678888776432111 1111111111 22 224677888887763 77888887655
Q ss_pred ecc--cccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 347 ISG--FQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 347 ~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
... +......+....+ ++.+.+.|+.|+.-
T Consensus 504 ~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNN 535 (571)
T ss_pred eEcccCccccccccEEEE--CCEEEEEecccCcc
Confidence 332 2222222222222 45666677665543
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.022 Score=55.53 Aligned_cols=105 Identities=9% Similarity=0.076 Sum_probs=71.8
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.+-+++.|+..|.+...|+..+-.. .......+.+|.+++| +.+|..++.|-.+|.|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~----------------~~~ne~v~~~Vtsvaf-------n~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP----------------LHQNERVQGPVTSVAF-------NQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch----------------hhcCCccCCcceeeEe-------cCCCceeccccCCCcE
Confidence 3457888888888888877643100 0111223478999999 7899999999999999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH 202 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~ 202 (430)
.+||+..++..+.+..+... +. .+..+.+..++..++++ ..|. +|.+.
T Consensus 155 ~v~D~~~~k~l~~i~e~~ap-~t-~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEHGAP-VT-GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEccCCcceeeeeecCCc-cc-eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 99999999988888766541 12 44455555566655555 4454 55543
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.10 E-value=0.18 Score=44.52 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=43.4
Q ss_pred cCeEEEEEccC-------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 266 GGVTHVQFSRD-------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 266 ~~i~~~~~~~~-------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
..+..+.|.+. |.++++.- ..+.|....+...................+..+++.|||.+.++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADY-GGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEET-TTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecC-CCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45677777543 34454444 6778888888655443322222234455789999999999888888888774
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.07 E-value=0.0031 Score=36.75 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.0
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
.....|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 34567899999999999999999999999999 4544
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.07 E-value=0.0023 Score=37.26 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=28.2
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP 90 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~ 90 (430)
...|.+++|+|..++||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3459999999999999999999999999984
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0031 Score=61.05 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
.+..++.++ ..|.+-..|+...-.. .........+|++++|+.+|+.++.|-.+|.|.+||+..+++++.+..|..
T Consensus 98 ~~~~ivi~T-s~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGT-SHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEc-Cchhhhhhhhhcccch---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 455677777 8899999998875222 223345578899999999999999999999999999999999998887776
Q ss_pred CeeEE---EEcCCCcEEEEeeCCce
Q 014125 356 TVNGF---SFHPFLPMAASSSGHRR 377 (430)
Q Consensus 356 ~v~~~---~~~~~~~~l~s~~~d~~ 377 (430)
+.+++ .+..++..+.++..-|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 65554 44455666777665553
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.03 E-value=0.24 Score=44.75 Aligned_cols=274 Identities=14% Similarity=0.172 Sum_probs=135.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
+...|++||..|.++||+....... .....+...-+.+|..+..-.... ..+...||+ -.-..+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~-------------~~~lllE~~l~~PILqv~~G~F~s--~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ-------------PEDLLLETQLKDPILQVECGKFVS--GSEDLQLAV-LHPRKL 99 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC-------------CccEEEEEecCCcEEEEEeccccC--CCCcceEEE-ecCCEE
Confidence 3468999999999999998543211 112334444556787777633211 122334444 445567
Q ss_pred EEEeccCC--c-------eeeeeecccccccccceEEEEECC----CC-cEEE-EEcCCeEEEEEcCCCCCccccccccc
Q 014125 151 HLWDATTG--L-------LRCTYRAYDAVDEITAAFSVAFNP----TG-TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 151 ~vwd~~~~--~-------~~~~~~~~~~~~~~~~v~~~~~~~----~~-~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+|.+... . .+.....|.- ......++.-| .+ .+|. =+.||.+.+|+-+.-. +.
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--------f~ 168 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--------FS 168 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--------EE
Confidence 77776321 1 1111111111 11333343322 22 3333 3689999999976521 11
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--------------------e---eeEEeeccccC---eE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------------------E---LLYVLHGQEGG---VT 269 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------------~---~~~~~~~~~~~---i~ 269 (430)
..+.. ---...+.|.| ....|++++.+..+.-|....- + +-.++. -... |.
T Consensus 169 ~~lp~-~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~ 245 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQ 245 (418)
T ss_pred EEcCC-CCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEE
Confidence 00011 11233467777 6668888888888888864210 0 011111 1122 33
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce--EEE--EEcCCC-CEEEEEccCCcEEEEEcCCC
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR--ILF--DIEPSG-RHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~--~~~~~~-~~l~~~~~dg~i~vwd~~~~ 344 (430)
.+.++.....+++-| ...+.+.+....-...+++ ....... ..+ ...|+. ..++.++.++++.||.=.+-
T Consensus 246 v~~~~~~~~~IvvLg--er~Lf~l~~~G~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L 320 (418)
T PF14727_consen 246 VVRFSSSESDIVVLG--ERSLFCLKDNGSLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL 320 (418)
T ss_pred EEEcCCCCceEEEEe--cceEEEEcCCCeEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE
Confidence 334443444566655 5667776664322222111 1111111 111 112221 24888899999999864433
Q ss_pred CeecccccccCC--eeEEEEcCCCcEEEEeeCCceeeec
Q 014125 345 KWISGFQAAADT--VNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 345 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
..-..+ ...+ |.-..|..-..+|++-+.+|.+.+-
T Consensus 321 ~WsA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 321 VWSAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVS 357 (418)
T ss_pred EEecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEE
Confidence 322222 2223 2333344445688888888877765
No 396
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.046 Score=51.37 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=101.8
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
-.|+|++. +|+....+.-... .+..+.|+.+..+|+...+|.+++|++-..... ............|..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-----~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie-----~~svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-----ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE-----SNSVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-----CeeeecccCCceEEEEeccceEEEeecchhhhc-----ccccccccccCceeE
Confidence 34777776 4444443333222 777999999999999999999999998642111 000001112223444
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec---cccCeEEEEEccCCC--E-EEEEecCCCeEEEEeCCCCceE
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHVQFSRDGN--Y-LYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~--~-l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
+.+.. ++ +++-..+|.+.+-.-.......++.. ...+-.|-...+++. . ++-.....+ ..++-.......
T Consensus 133 c~~f~-~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q 208 (829)
T KOG2280|consen 133 CRFFH-NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQ 208 (829)
T ss_pred EEEec-Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccc
Confidence 44443 33 33344456655543322222222221 111112222222211 1 111110000 111111111111
Q ss_pred EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFL 366 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 366 (430)
. .........+..+..||+.++|+--...|.|.+-+.+..+.+..+... ..+...++|..+.
T Consensus 209 ~---~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 209 L---HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred c---cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 1 111222456778999999999999999999999999887777766522 1233467776443
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.98 E-value=0.2 Score=43.12 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=89.4
Q ss_pred EEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce
Q 014125 177 FSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 177 ~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
..+....++..++++..|. ||.....+..++... ....+.+..+.-++ ++.+++++.......-||.-...
T Consensus 107 ~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~------~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~ 177 (302)
T PF14870_consen 107 FGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVV------SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTT 177 (302)
T ss_dssp EEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-------S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS
T ss_pred eEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcc------cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCcc
Confidence 3444444555555665554 555555555554322 22235688888888 56677777666666677754322
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE-eecccCCccceEEEEEcCCCCEEEEEccCCc
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK-LYRSSEHTNQRILFDIEPSGRHLGTGGQDGL 335 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 335 (430)
-...-..-...|.+|.|.|++...++ . ..|.|+.=+.......... ........-.+..++|.+++...++|+. |.
T Consensus 178 w~~~~r~~~~riq~~gf~~~~~lw~~-~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~ 254 (302)
T PF14870_consen 178 WQPHNRNSSRRIQSMGFSPDGNLWML-A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT 254 (302)
T ss_dssp -EEEE--SSS-EEEEEE-TTS-EEEE-E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-
T ss_pred ceEEccCccceehhceecCCCCEEEE-e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc
Confidence 22222223578999999999876554 4 7899998873222222111 1111223344789999998887776665 43
Q ss_pred EEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEe
Q 014125 336 VHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~ 372 (430)
+ +...+.|+.-...+ .-...+..|.|.+..+-++.|
T Consensus 255 l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 255 L-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred E-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 3 34455555433222 233467888888665555544
No 398
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.041 Score=52.33 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=97.7
Q ss_pred CCceEEEEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 014125 137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~ 204 (430)
++.+++.|+.+ ..+..||+.++.....-..... .... +++. -++++.+ +|.+ ..+..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 45667777753 3477888877654322111110 0011 2222 2455555 4443 34788887653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----------------------CeEEEEEcCCceee--E
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----------------------QTSAIYREDNMELL--Y 259 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------------------g~v~~~d~~~~~~~--~ 259 (430)
.+.....+...... ...+.+ ++.+++.|+.+ ..+..||..+.+-. .
T Consensus 378 --~W~~~~~mp~~r~~----~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 378 --KWKMLPDMPIALSS----YGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred --eEEECCCCCccccc----ccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 22222222211111 122222 56677877754 24777887765432 2
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCC------CeEEEEeCCC-CceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKD------PYILCWDLRK-AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
.+....... +++ .-+++..+.|| .+ ..+..||..+ ..-. ..............+.+ +|++.++|+.
T Consensus 449 ~m~~~r~~~-~~~-~~~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~--~~~~m~~~r~~~~~~~~--~~~iyv~Gg~ 521 (557)
T PHA02713 449 NFWTGTIRP-GVV-SHKDDIYVVCD-IKDEKNVKTCIFRYNTNTYNGWE--LITTTESRLSALHTILH--DNTIMMLHCY 521 (557)
T ss_pred CCCcccccC-cEE-EECCEEEEEeC-CCCCCccceeEEEecCCCCCCee--EccccCcccccceeEEE--CCEEEEEeee
Confidence 221111111 122 22455555555 43 2467888886 3221 11111222222222332 5788889998
Q ss_pred CC--cEEEEEcCCCCeecccccccC
Q 014125 333 DG--LVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 333 dg--~i~vwd~~~~~~~~~~~~~~~ 355 (430)
+| .+..||..+.+.......|..
T Consensus 522 ~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 522 ESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred cceeehhhcCcccccccchhhhcCC
Confidence 88 788888888777655555543
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.25 Score=42.76 Aligned_cols=222 Identities=12% Similarity=0.089 Sum_probs=116.0
Q ss_pred EEECcCCce-EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 66 IKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 66 ~~~sp~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
..|.++... +.+--..+.|.-|+..+++. ..+.....+.++.. +.. +..|++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------------------~~~~~p~~~~~~~~------~d~-~g~Lv~- 82 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-------------------RVFPSPGGFSSGAL------IDA-GGRLIA- 82 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-------------------EEEECCCCccccee------ecC-CCeEEE-
Confidence 456776664 44445567788887764422 11111122222222 122 223333
Q ss_pred eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC----------CeEEEEEcCCCCCcccccccc
Q 014125 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN----------KSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 145 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----------~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+..| +.+++.+++..+..+............+.....|+|.+.++... ..-.+|-+...+...+
T Consensus 83 ~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~----- 156 (307)
T COG3386 83 CEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR----- 156 (307)
T ss_pred Eccc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-----
Confidence 3344 67777766665333333222122235668888999988885422 0113333332111111
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--ce-----eeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--ME-----LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
....+-..-+.++|+|++..++++=+..+.|.-|++.. +. ....+....+..-.++...+|.+.+++. .+
T Consensus 157 --l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~ 233 (307)
T COG3386 157 --LLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WG 233 (307)
T ss_pred --eecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cC
Confidence 11222344678999997766666666678899988752 11 1222223345667788888888775554 44
Q ss_pred C-eEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEE
Q 014125 288 P-YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLG 328 (430)
Q Consensus 288 ~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~ 328 (430)
| .|.+|+.. ++... ... -....+++++|- |+.+.|+
T Consensus 234 g~~v~~~~pd-G~l~~-~i~---lP~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 234 GGRVVRFNPD-GKLLG-EIK---LPVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred CceEEEECCC-CcEEE-EEE---CCCCCCccceEeCCCcCEEE
Confidence 4 89999988 43332 221 222456666664 3334433
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.00092 Score=63.23 Aligned_cols=149 Identities=12% Similarity=0.057 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCCCccc--ccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeE
Q 014125 194 KSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 269 (430)
|.+.||+++.-..... ....+. ......+.-+.|.|- +.-.+..+..+++|++........ ..+.+|...++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~---~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~ 228 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPI---TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVT 228 (1283)
T ss_pred hhhheeehHhhccccccceEEeec---CcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcc
Confidence 6788898865222111 111111 122223344444442 345666677788888877654322 23334554444
Q ss_pred EE-----------EEccCCCEEEEEecCCCeEEEEeCCCCce-EEEEeecccCCc-cceEEEEEcCC-------C--CEE
Q 014125 270 HV-----------QFSRDGNYLYTGGRKDPYILCWDLRKAVQ-VVYKLYRSSEHT-NQRILFDIEPS-------G--RHL 327 (430)
Q Consensus 270 ~~-----------~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~-~~v~~~~~~~~-------~--~~l 327 (430)
.+ ..+|||..++..+ .||.++.|.+.-... ....+.....|. .+..|.-++.. + .++
T Consensus 229 d~a~~~~g~~~l~~lSpDGtv~a~a~-~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~ 307 (1283)
T KOG1916|consen 229 DMAFFAEGVLKLASLSPDGTVFAWAI-SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLR 307 (1283)
T ss_pred cHHHHhhchhhheeeCCCCcEEEEee-cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEE
Confidence 32 2689999999999 999998887542211 111122223344 22222223322 1 245
Q ss_pred EEEccC-CcEEEEEcCCCCee
Q 014125 328 GTGGQD-GLVHIYDLQTGKWI 347 (430)
Q Consensus 328 ~~~~~d-g~i~vwd~~~~~~~ 347 (430)
++++.- ..+++|....++++
T Consensus 308 Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 308 ITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EecccCCcceeEeeccchhhh
Confidence 555543 45999988877765
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.80 E-value=0.23 Score=47.32 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCceEEEEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC-----eEEEEEcCCC
Q 014125 137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK-----SVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~-----~i~v~d~~~~ 204 (430)
++.+.++|+.| .++..||..+++....-.. .... .-.+++.. +|.+.+ +|.|| ++-.||..+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-~~~R---~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-NTKR---SDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCc-cCcc---ccceeEEE-CCEEEEEeccccccccccEEEecCCCC
Confidence 46688888888 3577888888775442211 1111 11122221 455555 55664 4777777653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC------eEEEEEcCCceee--EEeeccccCeEEEEEccC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ------TSAIYREDNMELL--YVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~ 276 (430)
. +....... ........+.+ ++.+.++|+.++ ++..||..+.+-. ..+..-..... ++. -+
T Consensus 407 ~--W~~va~m~----~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~ 475 (571)
T KOG4441|consen 407 K--WTPVAPML----TRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LN 475 (571)
T ss_pred c--ccccCCCC----cceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-EC
Confidence 2 11111111 11112222233 677888888554 5678887766432 22221112222 222 24
Q ss_pred CCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCe
Q 014125 277 GNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKW 346 (430)
Q Consensus 277 ~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 346 (430)
+...+.|| .|+ +|..||..+..-... .........+..+.+ ++...++|+.|| +|..||..+.+.
T Consensus 476 ~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v--~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 476 GKIYVVGG-FDGTSALSSVERYDPETNQWTMV--APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CEEEEECC-ccCCCccceEEEEcCCCCceeEc--ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 55555555 665 377788877643221 111222222222222 467778888776 477777665543
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.26 Score=41.19 Aligned_cols=167 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+.++.| +|+.+.|++......-.|+=..+|+.+..+....-. ..-.+.+..+++++++. .++.+.+
T Consensus 86 ~nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 86 ANVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred ccccceee-------CCCcceEEEecCCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEEehhcceEEE
Confidence 34889999 778888888888888888877789998887765421 33467888888888877 7899999
Q ss_pred EEcCCCCCcccccc-ccc-CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-e--eEEeecc-------cc
Q 014125 199 FDVHRPGRDFEKYS-TLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-L--LYVLHGQ-------EG 266 (430)
Q Consensus 199 ~d~~~~~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~--~~~~~~~-------~~ 266 (430)
+.+........... .+. ......+.....++|.| ....|..+-+..-+.||...... . ......+ -.
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 88876433221111 111 11112255688999999 55566667666667777654322 1 1111111 23
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
.|.++.|++....|++-+..++.+.-.|....
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 57788898755545444437888887887655
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.74 E-value=0.66 Score=45.51 Aligned_cols=166 Identities=8% Similarity=0.088 Sum_probs=101.2
Q ss_pred ceEEEEEcCCCCceEEEec----------CCCeEEEEEcCCceeeEEeec--cccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 224 IMSAIAFSPTHTGMLAIGS----------YSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~----------~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
.+.++.|..+.+.++++|+ ..|.|.+|.....+.+..... -.+.+.++.- -+|+++|. -...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~---In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG---INQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe---cCcEEE
Confidence 4556678886677777775 247788887776433333221 2345555543 25665554 467999
Q ss_pred EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC--eeccc-ccccCCeeEEEEcCCCcE
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--WISGF-QAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~ 368 (430)
+|++.+.+.. .....+..++..+...-.|..+++|.--+++.+...+..+ ....- ..+....+++.+-.+..+
T Consensus 852 Lye~t~~~eL----r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~y 927 (1096)
T KOG1897|consen 852 LYEWTTEREL----RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTY 927 (1096)
T ss_pred EEEcccccee----hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceE
Confidence 9999877433 2224677788888888889999999988887776655433 33222 235567777777654444
Q ss_pred EEEeeCCceeeecCCCccccccCCCcEEEE
Q 014125 369 AASSSGHRRFPVDDFEDLHLSGDENCVSVW 398 (430)
Q Consensus 369 l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w 398 (430)
+-+..+|.+.+-..+.-++.-.|..+--|
T Consensus 928 -lgae~~gNlf~v~~d~~~~td~eR~~l~~ 956 (1096)
T KOG1897|consen 928 -LGAENSGNLFTVRKDSDATTDEERQILEE 956 (1096)
T ss_pred -EeecccccEEEEEecCCCCchhhhhcccc
Confidence 44455666665544444444444444333
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.72 E-value=0.42 Score=43.02 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=74.4
Q ss_pred eeeeeeeccccCccCCCCceEEEEe-----------CCC-cEEEEeccC--Ccee--eeeecccccccccceEEEEECCC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTT-----------RDH-PIHLWDATT--GLLR--CTYRAYDAVDEITAAFSVAFNPT 184 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 184 (430)
....++| .++|+++++-. ..+ .|.+++-.+ |+.. ..+.... .....+++.++
T Consensus 15 ~P~~ia~-------d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-----~~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCF-------DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-----SMVTGLAVAVG 82 (367)
T ss_pred CCceeeE-------CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-----CCccceeEecC
Confidence 3445566 77888777653 223 677776443 3221 2222111 14568999988
Q ss_pred CcEEEEEcCCeEE-EEEcCCCCCcc---c-ccccccCCCCCCCcceEEEEEcCCCCceEEEecC----------------
Q 014125 185 GTKIFAGYNKSVR-VFDVHRPGRDF---E-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------------- 243 (430)
Q Consensus 185 ~~~l~~~~d~~i~-v~d~~~~~~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------- 243 (430)
+ ++++... .|. +.|....+..- + ....+......+......+.|.|++ .++++-+.
T Consensus 83 G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 83 G-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred C-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcc
Confidence 8 5554444 444 43554322111 1 1111111001123447789999954 45443331
Q ss_pred ---CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 244 ---SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 244 ---dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.|.|.-++..+++......++ .....++|+|+|+.+++-.
T Consensus 160 ~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 145666666554433222222 3457899999998776544
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.70 E-value=0.32 Score=47.42 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=58.3
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCC-CCcccc------cccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-GISYDV------NACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..-.|..|.+||+|++||..|..|. .|-.+... .....+ ..|.. ..-............|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt---~~v~~~~~~~~~~~~i~qv~WhP~- 157 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRT---VPVDERFFTSNSSLEIKQVRWHPW- 157 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEE---EEechhhccCCCCceEEEEEEcCC-
Confidence 3446899999999999999998764 44444321 000000 00000 000001112234568999999997
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCC
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTG 158 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~ 158 (430)
+.++..|+.-..|+++++||+...
T Consensus 158 ---s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 158 ---SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCCCCeEEEEecCCEEEEEecCCC
Confidence 667889999999999999999754
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.68 E-value=0.087 Score=48.27 Aligned_cols=127 Identities=11% Similarity=0.136 Sum_probs=72.9
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-----CceeeeeecccccccccceEEEEECCCCcEEEEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
+.-+.|..++|.|...+ +...|++......|.||.+.. ++........-......-...+.|+|....|++=
T Consensus 54 GqFEhV~GlsW~P~~~~---~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTA---DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred eccceeeeeeecCcccC---CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 33468999999886543 233555666677799999752 2222221111100000112367899999988843
Q ss_pred -cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC
Q 014125 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 253 (430)
....-.+++++..+...+ .. -...+.|.|.+|.+|+.+++++.+..=.-++||-.
T Consensus 131 T~~dvSV~~sV~~d~srVk------aD-i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVK------AD-IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCceeEeeeeeeCCceEE------Ee-ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 222223455554322111 11 13346799999999777776666666667888854
No 407
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.68 E-value=0.35 Score=41.61 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=102.1
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECCCCcEEEEEcCCeE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSV 196 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 196 (430)
...++.++.| ..+..-+++|. .+. ++....+ +.-................++.|..+ ..+++|..+.
T Consensus 15 t~~~l~dV~F-------~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG~~g~- 82 (302)
T PF14870_consen 15 TDKPLLDVAF-------VDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVGEPGL- 82 (302)
T ss_dssp -SS-EEEEEE-------SSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEEETTE-
T ss_pred CCCceEEEEE-------ecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEcCCce-
Confidence 4468888888 32344455554 453 3333333 22111111111011124567777654 4555666553
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~ 275 (430)
++....++..+..+... .... +....+.... ....++ .+..|.|+.= .+.++. ......-.+.+..+..++
T Consensus 83 -ll~T~DgG~tW~~v~l~-~~lp---gs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 83 -LLHTTDGGKTWERVPLS-SKLP---GSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp -EEEESSTTSS-EE-----TT-S---S-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-T
T ss_pred -EEEecCCCCCcEEeecC-CCCC---CCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECC
Confidence 34444455555443211 1111 1223333322 222333 3344554332 222222 222233456788899999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc-CCCCe----eccc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL-QTGKW----ISGF 350 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~----~~~~ 350 (430)
+|++++++. ....+.-||--...-. ... ......|..+.|+|++.+.+.+ ..|.|++=+. ...+. +..+
T Consensus 155 dG~~vavs~-~G~~~~s~~~G~~~w~--~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~ 228 (302)
T PF14870_consen 155 DGRYVAVSS-RGNFYSSWDPGQTTWQ--PHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI 228 (302)
T ss_dssp TS-EEEEET-TSSEEEEE-TT-SS-E--EEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT
T ss_pred CCcEEEEEC-cccEEEEecCCCccce--EEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCc
Confidence 999988886 5555567775432111 111 2346789999999998776654 7888888772 22211 1122
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
..-.-.+..++|.+++...++++..
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccCceeeEEEEecCCCCEEEEeCCc
Confidence 2233358999999998877766543
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.047 Score=48.92 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=95.0
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--------cEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--------TKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+..|.....++-.|++.|+.+..+..+.. + -+.|.|.. +.|++-.+..|.-.|.+..+......
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~dd------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDD------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCc------c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 34555666788889999999999888763 3 56677753 34444467777777777654322111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
..+. ........+..-. ...++|+++..|.|++||.-..+....+.+....|-.+..+.+|++++++| ...+.+
T Consensus 555 esKd--Y~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL 628 (776)
T COG5167 555 ESKD--YKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLL 628 (776)
T ss_pred eehh--ccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEE
Confidence 1110 1111122333222 345899999999999999766566666777778899999999999999988 667778
Q ss_pred EeCC
Q 014125 293 WDLR 296 (430)
Q Consensus 293 ~d~~ 296 (430)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7765
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.66 E-value=0.16 Score=45.71 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCceEEEec-----------CCC-eEEEEEcCC--cee--eEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 224 IMSAIAFSPTHTGMLAIGS-----------YSQ-TSAIYREDN--MEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~-----------~dg-~v~~~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
....|+|.+ .++++++-. ..+ .|.+++-.+ ++. ...+.........+++.++| |+++. ..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~ 90 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PP 90 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CC
Confidence 367889998 555665532 223 777776543 222 23333233456889999988 55554 44
Q ss_pred CeEEEEeCCCC------ceEEEEeeccc--CCccceEEEEEcCCCCEEEEEccC-------------------CcEEEEE
Q 014125 288 PYILCWDLRKA------VQVVYKLYRSS--EHTNQRILFDIEPSGRHLGTGGQD-------------------GLVHIYD 340 (430)
Q Consensus 288 ~~i~i~d~~~~------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~vwd 340 (430)
...++.|.... ...+..-.... .+......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43344454321 11111111111 023446789999999876654421 3455556
Q ss_pred cCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 341 LQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..+++. ..+.........++|+|+|.++++-..
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCCEEEEccC
Confidence 554443 222222234678999999998876543
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.008 Score=47.79 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=80.0
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
.+..-+.+|.|+-+++..-+....-..... .... .-.-+.-++ ++.+|.|.+|.....+......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~-----e~~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------- 97 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFID-----EGQR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV------- 97 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhh-----ccee--ecccCceEEeecccceEEEecCCccchHHHhh-------
Confidence 345556788888777654332211111000 1111 111233444 4589999999987433222111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEccCCCEEEEE--ecCCCeEEEEeC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTG--GRKDPYILCWDL 295 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~~d~~i~i~d~ 295 (430)
......+.++.-.-+.+.+..++..+|.|+.|+..-.+.+.....|. .++.....+..++++..+ + .|..++.|++
T Consensus 98 ~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~v 176 (238)
T KOG2444|consen 98 CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNV 176 (238)
T ss_pred hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcch
Confidence 11122344433333355588999999999999998888777666676 455555555555555555 5 6666677766
Q ss_pred CC
Q 014125 296 RK 297 (430)
Q Consensus 296 ~~ 297 (430)
..
T Consensus 177 e~ 178 (238)
T KOG2444|consen 177 EK 178 (238)
T ss_pred hh
Confidence 54
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.57 E-value=0.18 Score=40.56 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=68.4
Q ss_pred EEEEECCCCcEEE-E-EcCCeEEEEEcCCCCCccc---ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 177 FSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFE---KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 177 ~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
..++|+.+.+.+. . +.+-+|.-||.+.+..... .+..+++......-..-.++... .++++++.-..++|..+|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 4789998887776 3 4677787788543322111 11112221111111223344454 677888888899999999
Q ss_pred cCCceeeEEeeccccCeEEEEEc-cCCCEEEEEe
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGG 284 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 284 (430)
..+++.+..+.-....|++++|- |+-..+++++
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999999998888899999994 3334555554
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.0046 Score=58.80 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=91.4
Q ss_pred CeEEEEEcCCcee-eEEeeccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCc---eEEEEeecccCCccceEEEE
Q 014125 245 QTSAIYREDNMEL-LYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAV---QVVYKLYRSSEHTNQRILFD 319 (430)
Q Consensus 245 g~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~ 319 (430)
+.+++-+..+... ...+++..+.+-.+.|.. +-..+. - .-|.+.+||+.--. .....+.......+.+.-+.
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~-~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--R-LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--H-HhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4455554433221 122345566777777742 111222 1 45678888875311 11111111122333444455
Q ss_pred EcC---CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE-----------cCCCcEEEEeeCCceeeecCCCc
Q 014125 320 IEP---SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF-----------HPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 320 ~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
|.| +.-++..+-.++.|++...++... ..+.+|...+..++| +|||..+++++.||.++.|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~---- 262 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY---- 262 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee----
Confidence 554 567888888899999887765443 556668777666654 5566666666554444443
Q ss_pred cccccCCCcEEEEeecccccccccCCCCcceeeeeccCccCCCC
Q 014125 386 LHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHENLNQD 429 (430)
Q Consensus 386 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (430)
.|+|.+.....++.....|++.+-.|..|+...|++
T Consensus 263 --------Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~ 298 (1283)
T KOG1916|consen 263 --------QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILV 298 (1283)
T ss_pred --------eeeeeccccHhhhhccCCCCCCCceeeeeccccccC
Confidence 233333333445555566766677777777777765
No 413
>PHA02713 hypothetical protein; Provisional
Probab=96.51 E-value=0.43 Score=45.54 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=65.4
Q ss_pred CCceEEEecCCC-----eEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEEEecCC-------------------
Q 014125 234 HTGMLAIGSYSQ-----TSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKD------------------- 287 (430)
Q Consensus 234 ~~~~l~~~~~dg-----~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d------------------- 287 (430)
++.+++.|+.++ ++..||..+.+-.. .+.........+.. +|+..+.|| .+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG-~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGG-RTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeC-CCccccccccccccccccccc
Confidence 566888888754 48889987654321 22211111222222 565555565 44
Q ss_pred ----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------CcEEEEEcCC-CCe--eccccccc
Q 014125 288 ----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------GLVHIYDLQT-GKW--ISGFQAAA 354 (430)
Q Consensus 288 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~-~~~--~~~~~~~~ 354 (430)
..+..||..+..-. ............ +++ .-+|+..+.|+.+ ..+..||..+ .+. +..+....
T Consensus 428 ~~~~~~ve~YDP~td~W~--~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWE--TLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccceEEEECCCCCeEe--ecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 24777887765321 111111111111 122 2246666777654 2467899886 443 33443322
Q ss_pred CCeeEEEEcCCCcEEEEeeCCc
Q 014125 355 DTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.....+.+ ++++.++|+.++
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ccceeEEE--CCEEEEEeeecc
Confidence 22222222 566777776554
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.1 Score=51.58 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=92.6
Q ss_pred ceEEEEECCCCcEEEEE---cCCeEEEEEcCCCCCcc-cccccccC--CCCCCCcceEEEEEcCCCCceEEEecCCCeEE
Q 014125 175 AAFSVAFNPTGTKIFAG---YNKSVRVFDVHRPGRDF-EKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA 248 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~---~d~~i~v~d~~~~~~~~-~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~ 248 (430)
++..+...+|+...++. .+-.|..||++.-.... .....+.. ..........++.|+|.-.-..++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666777666532 44478899987532111 00111111 11122345678899996666778888899999
Q ss_pred EEEcCCcee-eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc-CCccceEEEEEcCCCCE
Q 014125 249 IYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS-EHTNQRILFDIEPSGRH 326 (430)
Q Consensus 249 ~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 326 (430)
+..+..... +..+. .....++++|+|.|+.++.+- ..|++.-|...-... ..+.... .....|.+++|-..-.+
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~-nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGR-NNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEec-CCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeE
Confidence 887654332 22222 456789999999999999998 899999887643311 1221111 12467889999776666
Q ss_pred EEE
Q 014125 327 LGT 329 (430)
Q Consensus 327 l~~ 329 (430)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 553
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.45 E-value=0.15 Score=48.30 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=67.2
Q ss_pred CceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEc--cCCCEEEEEecCCCeEEEEeCC-----CCc---eEEE
Q 014125 235 TGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFS--RDGNYLYTGGRKDPYILCWDLR-----KAV---QVVY 303 (430)
Q Consensus 235 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~~d~~i~i~d~~-----~~~---~~~~ 303 (430)
+...++-+....+.|||.+.+.....-. ...+.|..+.|. |+++.+++.| ..+.|.+|--. +.. ....
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhcCCcccceeE
Confidence 3344445556679999999886543332 346789999985 6899999999 89999998542 111 1111
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
.+.-......+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2111112235788999999987666443 46888874
No 416
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.31 E-value=0.56 Score=39.65 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=111.6
Q ss_pred ceEEEEECCCCcEEEEE-cCCeEEEEEcCCC---CCcccccccccC-CCCCCCcceEEEEEcCC-----------CCceE
Q 014125 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP---GRDFEKYSTLKG-NKEGQAGIMSAIAFSPT-----------HTGML 238 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~---~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-----------~~~~l 238 (430)
..+.++++|.+.+-++. ..+...+||.... +........+.. .-.......+.+.|+.. +...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 56789999999777765 6788999998721 111111111110 11112345677777742 11236
Q ss_pred EEecCCCeEEEEEcCCcee-----eEEeec-cccCe-EEEEEc--cCCCEEEEEecCCCeEEEEeCCCCceEEE-Eeecc
Q 014125 239 AIGSYSQTSAIYREDNMEL-----LYVLHG-QEGGV-THVQFS--RDGNYLYTGGRKDPYILCWDLRKAVQVVY-KLYRS 308 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~-----~~~~~~-~~~~i-~~~~~~--~~~~~l~~~~~~d~~i~i~d~~~~~~~~~-~~~~~ 308 (430)
+.+++||+|.-|...-... ...+.. ..+.| ..+++. ..+.+|+++....++|.+||-.-...... .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998532211 122221 12333 345554 34678888887899999998653311100 00000
Q ss_pred -------------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc--cccCCeeEEEEcC------CCc
Q 014125 309 -------------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ--AAADTVNGFSFHP------FLP 367 (430)
Q Consensus 309 -------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~------~~~ 367 (430)
.+..-.|+...-.++++.=+.|-.-|.|-+||+. |.+++.+. +.-...+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0001112222222333333344445789999977 77777663 2333567777765 455
Q ss_pred EEEEeeCCceeeecCC
Q 014125 368 MAASSSGHRRFPVDDF 383 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~~ 383 (430)
+|+---.||+|.++|.
T Consensus 263 lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 263 LLVGNFGDGTINAYDP 278 (336)
T ss_pred eEEeecCCceeEEecC
Confidence 6666555555555543
No 417
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.29 E-value=0.77 Score=41.09 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=99.8
Q ss_pred CCceEEEEe-CCCcEEEEeccCC----ceeeeeecccccc--cccceEEEEECCCCcEEEEE---cC----CeEEEEEcC
Q 014125 137 TSCVFASTT-RDHPIHLWDATTG----LLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG---YN----KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~---~d----~~i~v~d~~ 202 (430)
+.++|+..+ ..+.|.|.|+.+. +..+.+....-.. .......+..-|+|.+++++ .+ |.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455666665 6788999998843 3333333211110 11123344555788777742 22 456676655
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec--------------------CCCeEEEEEcCCceeeEEee
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--------------------YSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~v~~~d~~~~~~~~~~~ 262 (430)
+- ......... .+....-..+-|.| ..+.++++. ...++.+||+.+.+.++++.
T Consensus 166 tf----~v~g~We~~-~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TF----EVKGRWEKD-RGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T------EEEE--SB--TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred cc----cccceeccC-CCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 31 111111110 11223345667777 556666653 34689999999999998887
Q ss_pred ccc--cCeEEEEEc--cCCCEEEEEecCCCeEEEEeC-CCCceEEEEeecccC-----------------CccceEEEEE
Q 014125 263 GQE--GGVTHVQFS--RDGNYLYTGGRKDPYILCWDL-RKAVQVVYKLYRSSE-----------------HTNQRILFDI 320 (430)
Q Consensus 263 ~~~--~~i~~~~~~--~~~~~l~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~-----------------~~~~v~~~~~ 320 (430)
--. ....-|.|. |+..+=++++--..+|..|-- ..+.-...+...... -..-++.+.+
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 433 235567774 455554444424455554433 333222211111110 1345789999
Q ss_pred cCCCCEEEEEcc-CCcEEEEEcCCCC---eecccc----------------cccCCeeEEEEcCCCcEEEEee
Q 014125 321 EPSGRHLGTGGQ-DGLVHIYDLQTGK---WISGFQ----------------AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 321 ~~~~~~l~~~~~-dg~i~vwd~~~~~---~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
|.|.++|..... .|.|+.||+.... ++.++. .-.+...-+..|-||+.|...+
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999876664 7999999998632 222111 0112346677888888666543
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.15 E-value=0.64 Score=38.77 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=105.8
Q ss_pred eEEEEECCCCcEEE-EEc--CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 176 AFSVAFNPTGTKIF-AGY--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 176 v~~~~~~~~~~~l~-~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
...+.|..++.++- +|. ...|+.+|+.++... .. ..+... .---.++.. +..++...-.++...+||.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~-~~l~~~-----~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QS-VPLPPR-----YFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EE-EE-TTT-------EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EE-EECCcc-----ccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 34677766776666 553 347999998874221 11 111111 112233333 3445666667899999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec-ccCCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.+.+.+..+. ..+.=..++ .+++.|+.+. ....|+++|..+.......... ....-..++-+.+- +|...|-.=
T Consensus 118 ~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NTLKKIGTFP-YPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTTEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ccceEEEEEe-cCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 9998888876 345556777 4677788777 6788999998776433221111 11223345667775 566666555
Q ss_pred cCCcEEEEEcCCCCeeccccc---------------ccCCeeEEEEcCCCc-EEEEe
Q 014125 332 QDGLVHIYDLQTGKWISGFQA---------------AADTVNGFSFHPFLP-MAASS 372 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~-~l~s~ 372 (430)
....|...|..+|+.+..+.. ..+-.++|+|.|... +++||
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 667788899999987654320 124579999998766 44554
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.14 E-value=1.6 Score=43.20 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=112.4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeeccccccc---ccceEEEEECC-----------------CCcEEEEEcCCeEE
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE---ITAAFSVAFNP-----------------TGTKIFAGYNKSVR 197 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~-----------------~~~~l~~~~d~~i~ 197 (430)
+..++.++.++.|.-.|..+|+.+..+........ ......+++.. +++.++.+.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45777888889999999999998888765432111 00111222211 12344456888888
Q ss_pred EEEcCCCCCcccccc--c--ccCCCCCCCcceEEEEEcCC-CCceEEEecC----------CCeEEEEEcCCceeeEEee
Q 014125 198 VFDVHRPGRDFEKYS--T--LKGNKEGQAGIMSAIAFSPT-HTGMLAIGSY----------SQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 198 v~d~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~----------dg~v~~~d~~~~~~~~~~~ 262 (430)
-.|.+++......-. . +.............+.-.|- .+..+++|+. +|.|+-+|.++++.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 888877644322100 0 00000000000000011110 1225555532 6889999999999887764
Q ss_pred cc---------cc--------Ce-EEEEEccCCCEEEEEec-----------------CCCeEEEEeCCCCceEEEEeec
Q 014125 263 GQ---------EG--------GV-THVQFSRDGNYLYTGGR-----------------KDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 263 ~~---------~~--------~i-~~~~~~~~~~~l~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
.- .+ .+ ..+++++....++.... ..+.|.-.|.++++........
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 21 00 11 23455555444444220 1245666777777655433221
Q ss_pred ccC-----CccceEEEEEcC-CCC---EEEEEccCCcEEEEEcCCCCeeccc
Q 014125 308 SSE-----HTNQRILFDIEP-SGR---HLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 308 ~~~-----~~~~v~~~~~~~-~~~---~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.+. ......-+.+.. +|+ .++.++.+|.+++.|.++|+++...
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 110 011122223322 553 7899999999999999999987654
No 420
>PHA03098 kelch-like protein; Provisional
Probab=96.08 E-value=0.76 Score=43.91 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCceEEEEeCCC------cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 014125 137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~ 204 (430)
++.+++.|+.++ .+..||..+.+....-..... ......+.. ++.+++ +|.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 455666666542 577888877765332111111 011112222 455555 4433 35677777653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEE--eeccccCeEEEEEccC
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~ 276 (430)
.+.....+...... . +++.. ++.+++.|+.+ ..+..||..+.+-... +....... +++ ..+
T Consensus 369 --~W~~~~~lp~~r~~----~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~ 437 (534)
T PHA03098 369 --KWREEPPLIFPRYN----P-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHD 437 (534)
T ss_pred --ceeeCCCcCcCCcc----c-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EEC
Confidence 22222222111111 1 12221 55677777732 4588899876543221 11111111 122 224
Q ss_pred CCEEEEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCC
Q 014125 277 GNYLYTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQT 343 (430)
Q Consensus 277 ~~~l~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~ 343 (430)
+...+.|| .+ ..+.+||..+..-. ..............+.+ +++.++.|+.+ +.|.+||..+
T Consensus 438 ~~iyv~GG-~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 438 GKIYVIGG-ISYIDNIKVYNIVESYNPVTNKWT--ELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CEEEEECC-ccCCCCCcccceEEEecCCCCcee--eCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 55555555 32 23888888765322 11111111111122222 56777777654 4688888886
Q ss_pred CCe
Q 014125 344 GKW 346 (430)
Q Consensus 344 ~~~ 346 (430)
.+.
T Consensus 513 ~~W 515 (534)
T PHA03098 513 NTW 515 (534)
T ss_pred CEE
Confidence 544
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.07 E-value=1.7 Score=42.97 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=80.9
Q ss_pred CceEEEecCCCeEEEEEcCCceeeEEeeccccCeE-------------EEEEcc--CCCEEEEEec---------CCCeE
Q 014125 235 TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-------------HVQFSR--DGNYLYTGGR---------KDPYI 290 (430)
Q Consensus 235 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~---------~d~~i 290 (430)
...++.++.|+.+.-.|.++++....+.. .+.|. .+.-.| .+..+++++. .+|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 34788888999999999999998876642 12110 111122 1345666641 26889
Q ss_pred EEEeCCCCceEEEEeecccC-------------Cccce-EEEEEcCCCCEEEEEc------------------cCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSE-------------HTNQR-ILFDIEPSGRHLGTGG------------------QDGLVHI 338 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~-------------~~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~v 338 (430)
+-+|.++++........... ....+ ...+++|....++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999998765543211000 00011 2345555544443322 1345777
Q ss_pred EEcCCCCeecccccccCCeeEE---------EEcC-CCc---EEEEeeCCceeeecCC
Q 014125 339 YDLQTGKWISGFQAAADTVNGF---------SFHP-FLP---MAASSSGHRRFPVDDF 383 (430)
Q Consensus 339 wd~~~~~~~~~~~~~~~~v~~~---------~~~~-~~~---~l~s~~~d~~~~vw~~ 383 (430)
.|+++|+....++.....+.+. .+.. +|+ .++.++.+|.+.+.|.
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr 476 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDR 476 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEEC
Confidence 8888898887776522222221 1111 332 5666666666665554
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.05 E-value=0.77 Score=38.85 Aligned_cols=230 Identities=15% Similarity=0.148 Sum_probs=125.9
Q ss_pred eeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC------C-ceeeeeecccccccccceEEEEECCCC---------
Q 014125 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT------G-LLRCTYRAYDAVDEITAAFSVAFNPTG--------- 185 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 185 (430)
-+.+++ +|.+..-++....+...+||... . ..+-.+............+.+.|+...
T Consensus 25 ~WGia~-------~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 25 AWGLSY-------RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred cceeEe-------cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 456666 66677888888888999999861 1 222233322221122356667776432
Q ss_pred ----cEEEEEcCCeEEEEEcCCCCCcc-cccccccCCCCCCCcceEEEEEc--CCCCceEEEecCCCeEEEEEcCCceee
Q 014125 186 ----TKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKGNKEGQAGIMSAIAFS--PTHTGMLAIGSYSQTSAIYREDNMELL 258 (430)
Q Consensus 186 ----~~l~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~~~~ 258 (430)
.+|.++.||+|.-|........+ ......... ........+++. ..+..++++--..++|.+||-.-.+..
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 34668899999999854321100 000111111 111223344444 323445566667899999985432221
Q ss_pred E--Eeecc-----cc-----------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE
Q 014125 259 Y--VLHGQ-----EG-----------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 259 ~--~~~~~-----~~-----------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
. .+... -. .|+-..-.++++.=+.+. .-|.|-+||+... .+.++ ...+.-+..+.++.
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~--l~~r~-as~g~LNaPWG~a~ 251 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQ--LLRRV-ASSGRLNAPWGLAI 251 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCc--EEEEe-ccCCcccCCceeee
Confidence 0 01100 00 011111122222222222 4578999998764 33233 33555667778888
Q ss_pred cC------CCCEEEEEccCCcEEEEEcCCCCeecccccccC------CeeEEEEcC
Q 014125 321 EP------SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD------TVNGFSFHP 364 (430)
Q Consensus 321 ~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~~~ 364 (430)
.| .|.+|+---.||+|..||..+++.+..+....+ .++.|.|..
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66 466777666799999999999998877765433 467888865
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.2 Score=44.50 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=75.7
Q ss_pred cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 264 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
..++|.++.|++|.+.|++-- .++.|.+++....................|..+.|+.+ .-+|..+..| +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR-~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQR-TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEe-cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 467999999999999999887 89999999985443322222222344556889999876 4455555555 67776654
Q ss_pred C-CeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 344 G-KWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 344 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
. +.++..+.|.-.|.-..|.++.+.+.-++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 3 446666778888999999998885554443
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.03 E-value=1.1 Score=40.81 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=86.3
Q ss_pred CCce-EEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-------EEEEEecCCCeEEEEeCCCCceEEEEe
Q 014125 234 HTGM-LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-------YLYTGGRKDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 234 ~~~~-l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~~d~~i~i~d~~~~~~~~~~~ 305 (430)
+..+ +..|.....++--|+..|+.+.....|..- -+.|.|..+ .-++|- .+..|.-.|.+-........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccCCceeee
Confidence 4444 445666777888899999999888877554 577877542 223344 45555555665433221111
Q ss_pred -ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 306 -YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 306 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
...-.......+..-. ...|+|+|+..|-|++||--..+....+++....|..+..+.+|.++++.+..
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 1101111222222222 34589999999999999966555555667777899999999999977766643
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.00 E-value=0.032 Score=31.43 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.3
Q ss_pred cceEEEEEcCCCC--ceEEEecCCCeEEEEEcCC
Q 014125 223 GIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 223 ~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~ 254 (430)
+.++++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998555 6999999999999999995
No 426
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.91 E-value=0.29 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=29.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 157 (430)
.+.+++|+|...+ ...+.+|++...+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEecCC
Confidence 7899999997654 22467899999999999999774
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=95.79 E-value=1.3 Score=39.27 Aligned_cols=151 Identities=12% Similarity=0.016 Sum_probs=79.9
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEE-EcCCceeeE-EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIY-REDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~-d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
...+..+.+.| ++.+++++ ..|.+..- +- .++.-. ....-...++++.+.++++.++++ ..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg--~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA--RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe--cCCEEEEccCCCCC
Confidence 45688899998 45455444 45655432 22 222221 222334678999999999877665 46776542233322
Q ss_pred eEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEeeCC
Q 014125 300 QVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 300 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
........ ......+..+.+.|++..+++| .+|.+. ...+.++.-.... .-......+.|..++..+++| ..
T Consensus 247 -sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 247 -SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred -ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 11111110 1122457788899987765554 567554 3445444333322 122357777877666665544 34
Q ss_pred ceeeec
Q 014125 376 RRFPVD 381 (430)
Q Consensus 376 ~~~~vw 381 (430)
|.|..+
T Consensus 323 G~il~~ 328 (334)
T PRK13684 323 GVLLRY 328 (334)
T ss_pred ceEEEe
Confidence 444433
No 428
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.78 E-value=1.3 Score=39.32 Aligned_cols=210 Identities=11% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--EE-EE-cC---CeEEEEEcCCCCCc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IF-AG-YN---KSVRVFDVHRPGRD 207 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~-~~-~d---~~i~v~d~~~~~~~ 207 (430)
.|...+++...+++-+.+||+.. +.+..+... ......-...+.+ .++. |+ ++ .+ ..|++|.+......
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~~G-r~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDG-KELQSLPVG-RPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS--EEEEE-SS--EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCEEEEcCCC-cEEEeecCC-Ccceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 56677888888888999999964 444544321 1111112233444 3332 33 44 32 57999988743222
Q ss_pred ccccccccCCCCCCCcceEEEEE--cCC-CCceEEEecCCCeEEEEEcC---Cc----eeeEEeeccccCeEEEEEccCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAF--SPT-HTGMLAIGSYSQTSAIYRED---NM----ELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~~~l~~~~~dg~v~~~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+................+..+++ +|. +..++++...+|.+..|.+. .+ +.++.|.. ...+..+......
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 22221111111111233566665 343 33456667788998888764 22 35666663 4578889998888
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEE-EEe--ecccCCccceEEEEEc--CCC-CE-EEEEccCCcEEEEEcCC-CCeecc
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVV-YKL--YRSSEHTNQRILFDIE--PSG-RH-LGTGGQDGLVHIYDLQT-GKWISG 349 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~-~~~--~~~~~~~~~v~~~~~~--~~~-~~-l~~~~~dg~i~vwd~~~-~~~~~~ 349 (430)
..|+.+- .+.-|.-|+.+...... ..+ .........+-.+++- +++ .| |++.-.+++..||+... ...+..
T Consensus 220 g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 220 GRLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp TEEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred CCEEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 8999998 88888888886332111 111 1112234566666663 333 34 44545577899999874 343444
Q ss_pred c
Q 014125 350 F 350 (430)
Q Consensus 350 ~ 350 (430)
|
T Consensus 299 f 299 (381)
T PF02333_consen 299 F 299 (381)
T ss_dssp E
T ss_pred E
Confidence 4
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.78 E-value=0.41 Score=45.45 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=73.9
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
.+-+.-|.-++.-++-+....+.|||...+.+. ....+...+.|.++.|.. .|+++.++
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE----------------~~~~f~~~~~I~dLDWts-----t~d~qsiL 90 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE----------------YEESFSEDDPIRDLDWTS-----TPDGQSIL 90 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEE----------------EeeeecCCCceeeceeee-----cCCCCEEE
Confidence 334444444444444444557999999866421 112234567999999966 78999999
Q ss_pred EEeCCCcEEEEecc-----C----CceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 143 STTRDHPIHLWDAT-----T----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 143 ~~~~dg~i~vwd~~-----~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
+.+..+.|.++--. . -..+..+....... .+|.+..|.++|.+++ +.++.+.|+|-.-
T Consensus 91 aVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDKWL 157 (631)
T ss_pred EEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECCCc
Confidence 99999999998532 1 12233333222111 2788999999986655 4467888887543
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.76 E-value=1.3 Score=39.16 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=39.7
Q ss_pred cceEEEEEcC-------CCCEEEEEccCCcEEEEEcCCCCeec---c-cccccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 313 NQRILFDIEP-------SGRHLGTGGQDGLVHIYDLQTGKWIS---G-FQAAADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 313 ~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~---~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
..+..+.|-. .|.++++.-..+.|....++.+..+. . +......+..+++.|||.+.++.+.+|.|
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4555666653 34566666656778888876543222 1 22344479999999999988888766554
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.59 E-value=1.2 Score=43.02 Aligned_cols=154 Identities=8% Similarity=0.097 Sum_probs=91.0
Q ss_pred CcEEEEEcCCeEEEEEcCCCCCccc------ccccccC--------CCCCCCcceEEEEEcCC-CCceEEEecCCCeEEE
Q 014125 185 GTKIFAGYNKSVRVFDVHRPGRDFE------KYSTLKG--------NKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAI 249 (430)
Q Consensus 185 ~~~l~~~~d~~i~v~d~~~~~~~~~------~~~~~~~--------~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~ 249 (430)
..+++.+..+.|.||+++....... ....... ........|+.|....- +...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 5667777788999998865322110 0000000 00001223444444322 4568888999999999
Q ss_pred EEcCC-------c-------------eeeEEeeccccCeEEEEEc--cCCCEEEEEecCCCeEEEEeCCCCceEEEEeec
Q 014125 250 YREDN-------M-------------ELLYVLHGQEGGVTHVQFS--RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 250 ~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~ 307 (430)
|...+ . ++...+. -...+++++++ ...++||+++ ....|.||-.......... ..
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSs-Ns~~VTVFaf~l~~~r~~~-~~ 205 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSS-NSQEVTVFAFALVDERFYH-VP 205 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEec-CCceEEEEEEecccccccc-cc
Confidence 96531 0 0112222 23478899998 7777888887 7888888766542111111 11
Q ss_pred ccCCccceEEEEEcCCC-----C-EEEEEccCCcEEEEEc
Q 014125 308 SSEHTNQRILFDIEPSG-----R-HLGTGGQDGLVHIYDL 341 (430)
Q Consensus 308 ~~~~~~~v~~~~~~~~~-----~-~l~~~~~dg~i~vwd~ 341 (430)
...+...|-+++|-++. . .|++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 22356678888887643 2 7888999999999887
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.24 Score=49.19 Aligned_cols=144 Identities=10% Similarity=-0.032 Sum_probs=89.2
Q ss_pred ceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCceee-----EEeecc------ccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 224 IMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELL-----YVLHGQ------EGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~-----~~~~~~------~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
++..+...+| ....++ .+.+-.|..||+++-... .-+..| ..-..++.|+|.-....+.+..|+.|
T Consensus 102 pi~~~v~~~D-~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHD-ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccC-CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4555666664 333333 333447889998764221 111111 23456788888654333333379999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----ccCCeeEEEEcCCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----AADTVNGFSFHPFL 366 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~ 366 (430)
++..+......... .......++++|+|.|+.++.|-..|++.-|-.. .+....+.. ....|.+|.|-...
T Consensus 181 ~V~~~~~~~~~v~s----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcc----cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 99877654332222 2455678999999999999999999999888644 333333322 13579999999888
Q ss_pred cEEEEee
Q 014125 367 PMAASSS 373 (430)
Q Consensus 367 ~~l~s~~ 373 (430)
.+|+.-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 8777644
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.54 E-value=1.8 Score=41.75 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=67.9
Q ss_pred CCceEEEEeCCCcEEEEeccC-------C----ce---eeeeecccccccccceEEEEEC--CCCcEEEEE-cCCeEEEE
Q 014125 137 TSCVFASTTRDHPIHLWDATT-------G----LL---RCTYRAYDAVDEITAAFSVAFN--PTGTKIFAG-YNKSVRVF 199 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~-~d~~i~v~ 199 (430)
....|+.|..||.|.+|.+++ . +. ....+..-.......+++++++ ...++||+| ....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456899999999999997632 0 00 0000111111122378899998 788888877 55677777
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCC--Cc---eEEEecCCCeEEEEEc
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TG---MLAIGSYSQTSAIYRE 252 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~v~~~d~ 252 (430)
-............ ...+...|.+++|-++. +. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~-----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVP-----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccc-----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6654211111000 11245568899998754 22 6778888999999887
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.35 E-value=0.077 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=26.0
Q ss_pred CceeEEEECcCC---ceEEEecCCCeEEEEeCCC
Q 014125 61 NFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPE 91 (430)
Q Consensus 61 ~~v~~~~~sp~~---~~l~s~~~dg~v~iw~~~~ 91 (430)
+.|+++.|||+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888889999999984
No 435
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.27 E-value=0.19 Score=44.58 Aligned_cols=166 Identities=8% Similarity=0.080 Sum_probs=95.2
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCC-CcceE-EEEEcCCCCceEEEecCCCeEEEE-E
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMS-AIAFSPTHTGMLAIGSYSQTSAIY-R 251 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~~l~~~~~dg~v~~~-d 251 (430)
.+..+-..|||+.+..-...++.++++.......+.. .....+. ...|+ .+..-. ++.-+.+++.||-|.-| |
T Consensus 222 ~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl---~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKL---VDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred chHhhEECCCCCEEEEecCCeEEEEeecccccchhhh---hhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 6677889999999997666899999987643222111 1100110 01122 111222 66678889999998877 5
Q ss_pred cCCce-----eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE
Q 014125 252 EDNME-----LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH 326 (430)
Q Consensus 252 ~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 326 (430)
.+.+. .++.++-...++..+.-..+.+-+++-. ..|++.++.....+.... ...-..+.-+++||.+.+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~-~~G~L~~f~st~~~~lL~-----~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLY-RNGTLQSFYSTSEKLLLF-----ERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEc-CCCceeeeecccCcceeh-----hhhhcCcceeeeCcccch
Confidence 54332 1222222223343333333445566666 788888776544432211 111224556889999999
Q ss_pred EEEEccCCcEEEEEcCCCCeecccc
Q 014125 327 LGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 327 l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+++- ..|.++++.+++..+--++.
T Consensus 372 Ll~e-~~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 372 LLSE-DQGKIRLAQLENRNPEISWS 395 (733)
T ss_pred heee-cCCceEEEEecCCCCCccHH
Confidence 8865 44679999998776544443
No 436
>PHA03098 kelch-like protein; Provisional
Probab=95.21 E-value=2.8 Score=40.13 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCceEEEEeCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc--C----CeEEEEEcCCC
Q 014125 137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY--N----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--d----~~i~v~d~~~~ 204 (430)
++.+++.|+.+ ..+..||..+++....-..... ..-.+++. -++.+++ +|. + +.+..||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~----r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP----RYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC----CccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 46677777765 3477888877654432211111 01112222 2455555 442 1 45788887653
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeEE--eeccccCeEEEEEc
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYV--LHGQEGGVTHVQFS 274 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~ 274 (430)
.+...........+ . ++... ++.+++.|+.+ ..+.+||..+.+-... +.........+.+
T Consensus 417 --~W~~~~~~p~~r~~----~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~- 486 (534)
T PHA03098 417 --KWSKGSPLPISHYG----G-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF- 486 (534)
T ss_pred --eeeecCCCCccccC----c-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-
Confidence 22222111111111 1 22222 45577777643 2388899876543221 1111111122222
Q ss_pred cCCCEEEEEecCC-----CeEEEEeCCCC
Q 014125 275 RDGNYLYTGGRKD-----PYILCWDLRKA 298 (430)
Q Consensus 275 ~~~~~l~~~~~~d-----~~i~i~d~~~~ 298 (430)
+++.++.|| .+ +.+.+||..+.
T Consensus 487 -~~~iyv~GG-~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 -NNKIYVVGG-DKYEYYINEIEVYDDKTN 513 (534)
T ss_pred -CCEEEEEcC-CcCCcccceeEEEeCCCC
Confidence 555555665 33 46778887765
No 437
>PRK10115 protease 2; Provisional
Probab=95.15 E-value=3.7 Score=40.48 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=114.8
Q ss_pred ceeEEEECcCCceEEEecC-----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 62 FLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+..+.+||||++|+.+.. .-.|++-|+.++...... +.. .. ..++| .+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-----------------i~~-~~-~~~~w-------~~ 181 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-----------------LDN-VE-PSFVW-------AN 181 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-----------------ccC-cc-eEEEE-------ee
Confidence 4677899999998886533 235888888766321110 000 11 44788 55
Q ss_pred CCceEEEEeCC------CcEEEEeccCC--ceeeeeecccccccccceE-EEEECCCCcEEEE--E--cCCeEEEEEcCC
Q 014125 137 TSCVFASTTRD------HPIHLWDATTG--LLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFA--G--YNKSVRVFDVHR 203 (430)
Q Consensus 137 ~~~~l~~~~~d------g~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~--~--~d~~i~v~d~~~ 203 (430)
|++.|+....+ ..|..+++.++ +....+..... ... .+..+.++++++. . .++.+.+++...
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-----~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-----TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-----CEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 67666555432 35777888877 33334442221 122 3334547776652 2 457899998644
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---CCeEEEEEcCCceeeEEeecc-c-cCeEEEEEccCCC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMELLYVLHGQ-E-GGVTHVQFSRDGN 278 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~-~-~~i~~~~~~~~~~ 278 (430)
........ .. ........+. +. +..+++.... ...|...++........+..+ . ..|..+.+. ++
T Consensus 257 ~~~~~~~~--~~----~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~ 326 (686)
T PRK10115 257 ADAEPFVF--LP----RRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TD 326 (686)
T ss_pred CCCCceEE--EE----CCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CC
Confidence 32211111 10 0011112222 22 3333333322 223444455421122233334 2 367777776 44
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc--CCC-CEEEEEcc---CCcEEEEEcCCCC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE--PSG-RHLGTGGQ---DGLVHIYDLQTGK 345 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l~~~~~---dg~i~vwd~~~~~ 345 (430)
.|+.....+|.-+++-+.........+. . .....+..+.++ +++ .++++.+. -+.++.+|+.+++
T Consensus 327 ~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 327 WLVVEERQRGLTSLRQINRKTREVIGIA-F-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEeCCEEEEEEEcCCCCceEEec-C-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 5555553677665554432211121211 0 111223333344 333 34443333 3668888888764
No 438
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=0.54 Score=47.58 Aligned_cols=171 Identities=11% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee-eccccCccCC
Q 014125 59 PNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC-WFPHMSASDP 136 (430)
Q Consensus 59 h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~ 136 (430)
|...-+.+-+-|. ++.- .+-|..+.+|+++++.......... +.|..+. +.|....|-|
T Consensus 77 ~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~s-----------------htIl~V~LvkPkpgvFv~ 137 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLS-----------------HTILKVGLVKPKPGVFVP 137 (1311)
T ss_pred CcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchh-----------------hhheeeeeecCCCCcchh
Confidence 3433444545553 3222 3457889999999854433322211 2333332 2233333344
Q ss_pred CCceEEEEeCCCcEEEEeccCCceee-------eeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC-cc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRC-------TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR-DF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~ 208 (430)
.=++++.-..--.|.++-+.-.+... .++.. .....|.++....+|+.+++|.||. +|.+.-... .+
T Consensus 138 ~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~---~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gW 212 (1311)
T KOG1900|consen 138 EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS---VDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGW 212 (1311)
T ss_pred hhheeEEecccceEEEEEEEeccccCcccccccceeee---cCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCch
Confidence 44455555455556666543221111 11111 1123788999899999999998884 444321110 00
Q ss_pred --c--------------ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 209 --E--------------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 209 --~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
+ ....+......+..+|..+.... ..+++.+-++.|+|.+||+..
T Consensus 213 f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 213 FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 0 00111112235567999999988 788999999999999999876
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.011 Score=52.57 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=94.3
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.+.+.-++.++.+..+..||-... ........ +....++|..++..++ +-..+.+.+||+.+... .
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq-~~le~n~t------g~aldm~wDkegdvlavlAek~~piylwd~n~eyt-----q 110 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQ-VILELNPT------GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-----Q 110 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcc-eecccCCc------hhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-----H
Confidence 345555888888888888885433 22222221 1556788888887776 44789999999976321 1
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
++.. +....-.-+.|++ +...++.+...|.+.+++..+.+.....-.|...++++++.+.+..+. ++ .|..+.+
T Consensus 111 qLE~---gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~d-cd~~L~v 184 (615)
T KOG2247|consen 111 QLES---GGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CD-CDNTLSV 184 (615)
T ss_pred HHhc---cCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cC-cHHHHHH
Confidence 1111 1111122267888 778899999999999999988777666666889999999998875444 43 4655544
Q ss_pred E
Q 014125 293 W 293 (430)
Q Consensus 293 ~ 293 (430)
-
T Consensus 185 ~ 185 (615)
T KOG2247|consen 185 T 185 (615)
T ss_pred h
Confidence 3
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.66 E-value=0.0061 Score=53.97 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~ 304 (430)
.....|-|.+.+ ++.++.+..+..||-... ...... ..+....++|..++..+++.....+.+.+||+.+.....
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-- 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-- 111 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH--
Confidence 344567775554 777888888999986533 332332 345667889988888776665578999999998653221
Q ss_pred eecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 305 LYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 305 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+.....+.. .-+.|++.+..++.+...|.+.|++..+.+.+-..-.|...+++++|.+.+..+ .++.|.
T Consensus 112 LE~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred HhccCcchH--HHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence 111112222 227899988999999999999999998877766666688899999999866543 343333
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.48 E-value=1.6 Score=42.85 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=50.5
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcC---------Ccee---eEEe--------eccccCeEEEEEccC---CC
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---------NMEL---LYVL--------HGQEGGVTHVQFSRD---GN 278 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---------~~~~---~~~~--------~~~~~~i~~~~~~~~---~~ 278 (430)
...|..+.++| .+.+++..+..|-+.+.=.+ .++. .+.+ ..+...|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45799999999 55666666665544332111 1111 1111 123457889999997 46
Q ss_pred EEEEEecCCCeEEEEeCCCCceEE
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVV 302 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~ 302 (430)
.|++-. .|+.+|+||+.....+.
T Consensus 163 ~l~vLt-sdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLT-SDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEe-cCCEEEEEecCCCCCCe
Confidence 788887 89999999998655443
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=94.24 E-value=4.6 Score=37.94 Aligned_cols=185 Identities=10% Similarity=-0.026 Sum_probs=83.9
Q ss_pred CCceEEEEeCCC-----cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC--CeEEEEEcCCCCCcc
Q 014125 137 TSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN--KSVRVFDVHRPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d--~~i~v~d~~~~~~~~ 208 (430)
++.+++.|+.++ .+..||..+++....-..... . ... +++. -++.+.+. |.+ ..+..||.... .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-r--~~~-~~v~-~~~~iYviGG~~~~~sve~ydp~~n--~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-R--LYA-SGVP-ANNKLYVVGGLPNPTSVERWFHGDA--AW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-h--hcc-eEEE-ECCEEEEECCcCCCCceEEEECCCC--eE
Confidence 345667776543 466788877654332222111 0 011 2222 35555554 432 45777876542 22
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
.....+.... .....+.+ ++.+.+.|+.++ .+..||.++.+-... +.........+. -++ .|++.
T Consensus 344 ~~~~~l~~~r----~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~-~IYv~ 413 (480)
T PHA02790 344 VNMPSLLKPR----CNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGR-RLFLV 413 (480)
T ss_pred EECCCCCCCC----cccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECC-EEEEE
Confidence 2222221111 11222233 566888877653 477888776543221 111111111222 244 45444
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCC
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGK 345 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 345 (430)
| |.+.+||.++..-. ..............+. -+|+..+.|+.+ ..+.+||..+.+
T Consensus 414 G---G~~e~ydp~~~~W~--~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 414 G---RNAEFYCESSNTWT--LIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred C---CceEEecCCCCcEe--EcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4 34678888765322 2211111111222222 256777777754 246666666544
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.98 E-value=0.6 Score=38.29 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=51.9
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEe-----ecc-----cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL-----YRS-----SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
+..++.+|++.. .+|.+++||+.+.+...... ... ......|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT-~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAIT-SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEe-CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344788888888 89999999999875443220 000 03556788899998888777654 5788999887
Q ss_pred CCCeec
Q 014125 343 TGKWIS 348 (430)
Q Consensus 343 ~~~~~~ 348 (430)
-+..+.
T Consensus 96 L~~W~~ 101 (219)
T PF07569_consen 96 LGCWIR 101 (219)
T ss_pred cceeEE
Confidence 655443
No 444
>PRK10115 protease 2; Provisional
Probab=93.92 E-value=7.2 Score=38.53 Aligned_cols=112 Identities=7% Similarity=-0.000 Sum_probs=64.9
Q ss_pred ceEEEEECCCCcEEEEEc--C----CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC----
Q 014125 175 AAFSVAFNPTGTKIFAGY--N----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---- 244 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~--d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 244 (430)
.+..+.++|++++|+.+. + ..|++.|+.++.. +...... .-..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-------l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-------YPELLDN---VEPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-------CCccccC---cceEEEEeeCCCEEEEEEecCCCCC
Confidence 566788999999998542 2 3588888875321 1111111 114589999766666665432
Q ss_pred -CeEEEEEcCCc--eeeEEeeccccCeE-EEEEccCCCEEEEEe--cCCCeEEEEeCC
Q 014125 245 -QTSAIYREDNM--ELLYVLHGQEGGVT-HVQFSRDGNYLYTGG--RKDPYILCWDLR 296 (430)
Q Consensus 245 -g~v~~~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~--~~d~~i~i~d~~ 296 (430)
..|+.+++.++ +....+........ .+..+.++++++..+ ..++.+.+++..
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 36888888877 33333432223233 333444788766544 134578888853
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=2.7 Score=37.71 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=89.6
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
.-+.+-|...++.+++...|.+.-|.+..++..... ..-....++|.++.|++ +...+|+--.+.+|.+++...
T Consensus 24 esngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~ 97 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIP 97 (657)
T ss_pred cccceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCC
Confidence 344667777777888777788888877665432211 11123346899999999 677999999999999998743
Q ss_pred ceee----EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE
Q 014125 255 MELL----YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 255 ~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 328 (430)
.+.. .+.+.....|....|+.+ .-++... +.-+.+|............ ..+...|.-..|.++.+.++
T Consensus 98 d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~--~~G~e~y~v~pekrslRlV---ks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 98 DNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT--DQGIEFYQVLPEKRSLRLV---KSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred CchhhHHHHHhccCcceeEEEEEecC-eeEEEEe--cCCeEEEEEchhhhhhhhh---hhcccCccEEEEccccceEe
Confidence 3322 222233446889999866 4455554 3446666655443322222 45666777777888766533
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.59 E-value=4.9 Score=35.52 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=83.4
Q ss_pred ceEEEEEC-CCCcEEEEEcCCe------EEEEEcCCCCCccccc-----ccccCC----CCCCCcceEEEEEcCCCCceE
Q 014125 175 AAFSVAFN-PTGTKIFAGYNKS------VRVFDVHRPGRDFEKY-----STLKGN----KEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 175 ~v~~~~~~-~~~~~l~~~~d~~------i~v~d~~~~~~~~~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~l 238 (430)
.+..+.+. .++.+++.+.++. +..+++.......... ..+... +.......-++++.+ ++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~~ 99 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSFW 99 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCEE
Confidence 66788888 4566666777776 6666655411111100 001000 000111345778844 66677
Q ss_pred EEecCC------CeEEEEEcCCceeeEEee---------------ccccCeEEEEEccCCCEEEEEec----CCC--e--
Q 014125 239 AIGSYS------QTSAIYREDNMELLYVLH---------------GQEGGVTHVQFSRDGNYLYTGGR----KDP--Y-- 289 (430)
Q Consensus 239 ~~~~~d------g~v~~~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~----~d~--~-- 289 (430)
++.-.+ ..|+.++.. ++....+. ......-+|+++|+|+.|+++.. .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776667 789889876 55433331 12346889999999997776541 122 1
Q ss_pred -----EEEE--eCCCCc-eEEEEeecccC-----CccceEEEEEcCCCCEEE
Q 014125 290 -----ILCW--DLRKAV-QVVYKLYRSSE-----HTNQRILFDIEPSGRHLG 328 (430)
Q Consensus 290 -----i~i~--d~~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~ 328 (430)
++++ |..+.. ......+.... ....+..+.+-+++++|+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 4454 444311 11111122122 467788899999988765
No 447
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.54 E-value=7.8 Score=38.74 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=48.8
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc----c-----------c----ccCCeeEEEEcCCCcEEEEee
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF----Q-----------A----AADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~-----------~----~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..|.++....-+.+++..-.||+|.++|-.+.+.+... . | ...++..++|+|++-.++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 55667777677889999999999999998877555433 1 0 111344688999999888888
Q ss_pred CCceee
Q 014125 374 GHRRFP 379 (430)
Q Consensus 374 ~d~~~~ 379 (430)
.++.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 777644
No 448
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.54 E-value=9.1 Score=38.45 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=98.0
Q ss_pred ceEEEEEC---C----CCcEEEEEcCCeEEEEEcCCCCC------cc-----cccccccCCCCCCCcceEEEEEcCCCCc
Q 014125 175 AAFSVAFN---P----TGTKIFAGYNKSVRVFDVHRPGR------DF-----EKYSTLKGNKEGQAGIMSAIAFSPTHTG 236 (430)
Q Consensus 175 ~v~~~~~~---~----~~~~l~~~~d~~i~v~d~~~~~~------~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 236 (430)
+|..|+|. . ..++|++=....+.|+....... .. ..+..+... .-...+...++|+|....
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~-~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS-DTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechh-hcCCCccceEEeccCccc
Confidence 77777776 2 23577777778888888322111 00 011111111 112346889999999888
Q ss_pred eEEEecCCCeEEEEEcCCce-----eeEEeecccc----------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 237 MLAIGSYSQTSAIYREDNME-----LLYVLHGQEG----------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
.||+....|...||++.... .......+.+ .-..+.|.++...|+++. ...+.++|+++....
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--r~~l~~~d~~~~~~~ 237 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--RSKLMLIDFESNWQT 237 (765)
T ss_pred eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--CCceEEEECCCCCcc
Confidence 99999999999999992111 1111111112 234788988888888875 678999999987543
Q ss_pred EEEeecccCCccceEEEEEcCC--CCEEEEEccCCcEEEEEcCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~ 343 (430)
.. +. .......|..+.-+|. +..++-.+ ..|...++..
T Consensus 238 ~~-l~-~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 238 EY-LV-TAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred ch-hc-cCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 21 21 1345667888888876 23332222 4577777765
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.48 E-value=0.58 Score=38.40 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=48.1
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeee-eccccc--------ccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAV--------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
++.+|++.+.+|.+++||+.+++.+..- ....-. .....|..+.++.+|.-+++-.+|..+.|+.+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 6778999999999999999998765432 100000 233478888888888877766678888888754
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=3.2 Score=33.10 Aligned_cols=177 Identities=10% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCceEEEecC--CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCC
Q 014125 71 DGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH 148 (430)
Q Consensus 71 ~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg 148 (430)
+|.++.+.+. ...|++||+.+++......... +..-..-...-+..++.+.| .+|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-----~~~FgEGit~~gd~~y~LTw------------------~eg 111 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-----DTVFGEGITKLGDYFYQLTW------------------KEG 111 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-----ccccccceeeccceEEEEEe------------------ccc
Confidence 4567777665 3469999999876543322210 00000001112234555555 577
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCC-CcceE
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMS 226 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~ 226 (430)
.-..+|..+-+.+..+.... .-+.++ .|++.|+.+ ....++.-|..+-... ....-...+. -..++
T Consensus 112 vaf~~d~~t~~~lg~~~y~G------eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~----~~v~VT~~g~pv~~LN 179 (262)
T COG3823 112 VAFKYDADTLEELGRFSYEG------EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAEL----DTVQVTDDGVPVSKLN 179 (262)
T ss_pred eeEEEChHHhhhhcccccCC------cceeee--cCCcceEeeCCceEEEecCHHHhhhc----ceEEEEECCeeccccc
Confidence 78888888777666555433 334444 355555544 4445555554331110 0000000000 01122
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------------ccccCeEEEEEccCCCEEEEEe
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.+.|- ++.++|-.-.+..|...+..+|+.+.-+. .+..-.+.+++.|++..++..+
T Consensus 180 ELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 180 ELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33332 22233333334444444555555443322 2344678899999887776666
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=93.47 E-value=6.8 Score=36.83 Aligned_cols=142 Identities=9% Similarity=0.042 Sum_probs=64.4
Q ss_pred CCceEEEEeCC--CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC---CeEEEEEcCCCCCcccc
Q 014125 137 TSCVFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN---KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 137 ~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~~~~~ 210 (430)
++.+.+.|+.+ ..+..||..+++....-..... ......+. -+|++.+ +|.+ ..+..||..+. .+..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~---r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~ 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP---RCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD--QWQF 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC---CcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC--EEEe
Confidence 56667777754 3577888766654332221111 00111222 2555555 4433 35677887642 2222
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeeccccCeEEEEEccCCCEEEEEecCC-
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKD- 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~d- 287 (430)
...+..... ....+.+ ++.+++.| |.+.+||..+.+-. ..+.........+. -+++..++|| .+
T Consensus 391 ~~~m~~~r~----~~~~~~~---~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG-~~~ 457 (480)
T PHA02790 391 GPSTYYPHY----KSCALVF---GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGG-FYR 457 (480)
T ss_pred CCCCCCccc----cceEEEE---CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECC-cCC
Confidence 211111111 1122222 55677777 45778888765432 22221112222222 2555555555 33
Q ss_pred ----CeEEEEeCCCC
Q 014125 288 ----PYILCWDLRKA 298 (430)
Q Consensus 288 ----~~i~i~d~~~~ 298 (430)
..+..||..+.
T Consensus 458 ~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 458 GSYIDTIEVYNNRTY 472 (480)
T ss_pred CcccceEEEEECCCC
Confidence 24556665544
No 452
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.41 E-value=4.7 Score=34.79 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=91.8
Q ss_pred CCcceEEEEEcCCCC-----ceEEEecCCCeEEEEEcCCceeeEEeecc-------------------ccCeEEEEEcc-
Q 014125 221 QAGIMSAIAFSPTHT-----GMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------------EGGVTHVQFSR- 275 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~-----~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~- 275 (430)
..+.+..+.+....+ ..+++=+..+.|.+||+.+++..+.+..+ ...+..++.+|
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 445678888776322 23344444578999999988765544321 12356666655
Q ss_pred --CCCEEEEEecCCCeEEEEeCC-----CCce--------EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 276 --DGNYLYTGGRKDPYILCWDLR-----KAVQ--------VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 276 --~~~~l~~~~~~d~~i~i~d~~-----~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
+++.|+-.. ..+ -++|.+. +... ....+. ........++++++|.+.++--..+.|..|+
T Consensus 139 ~~d~r~LYf~~-lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG---~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~ 213 (287)
T PF03022_consen 139 SPDGRWLYFHP-LSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLG---DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWD 213 (287)
T ss_dssp STTS-EEEEEE-TT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEE---E---SECEEEEETTTEEEEEECCCTEEEEEE
T ss_pred CCCccEEEEEe-CCC-CcEEEEEHHHhhCccccccccccccceecc---ccCCCCceEEECCCCcEEEecCCCCeEEEEe
Confidence 566666555 222 1223221 1110 001110 1113445688899999998888999999999
Q ss_pred cCCCC---eecccccc---cCCeeEEEEcC--CCcEEEEeeCCceeeecCCCccccc---cCCCcEEEEeeccccccc
Q 014125 341 LQTGK---WISGFQAA---ADTVNGFSFHP--FLPMAASSSGHRRFPVDDFEDLHLS---GDENCVSVWSFLYASMME 407 (430)
Q Consensus 341 ~~~~~---~~~~~~~~---~~~v~~~~~~~--~~~~l~s~~~d~~~~vw~~~~l~~~---~~d~~i~~w~~~~~~~~~ 407 (430)
..+.- ....+... -..+.++.+.+ +|.+.+.+.. ...+... .++-..++|.....++++
T Consensus 214 ~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr--------l~~~~~~~~~~~e~nfri~~~~v~~~~~ 283 (287)
T PF03022_consen 214 PDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR--------LQRFAYGNLNPDEVNFRIWRARVDELIK 283 (287)
T ss_dssp TTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S----------SSTGGG---SS-SEEEEES-HHHHHT
T ss_pred CCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc--------chHhhccCCCCCccEEeEEEeCHHHHhc
Confidence 88621 12222211 23678999999 7877776652 2222221 246677888776655543
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.31 E-value=6.2 Score=35.83 Aligned_cols=148 Identities=9% Similarity=0.076 Sum_probs=79.8
Q ss_pred eEEEEECCCCcEEEEEcCCeEEE-EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 176 AFSVAFNPTGTKIFAGYNKSVRV-FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
...+..++++.+++.+..|.+.. ||--. ..+.. ........++.+.+.+ ++.+++++ ..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~~W~~------~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--PYWQP------HNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--cceEE------ecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCC
Confidence 34556778888888887775443 33211 00111 1122345688999988 45455554 5566543 3333
Q ss_pred ce-----eeEEeec--cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE
Q 014125 255 ME-----LLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 255 ~~-----~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 327 (430)
++ ....... ....++.+.|.+++..++++ ..|.+.... ..+ +..........-...++.+.|.++++.+
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~ 385 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGF 385 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceE
Confidence 32 1222221 12358899999887766555 578766653 222 2222221112334567889988776666
Q ss_pred EEEccCCcEEEE
Q 014125 328 GTGGQDGLVHIY 339 (430)
Q Consensus 328 ~~~~~dg~i~vw 339 (430)
++| .+|.|.-|
T Consensus 386 ~~G-~~G~il~~ 396 (398)
T PLN00033 386 VLG-NDGVLLRY 396 (398)
T ss_pred EEe-CCcEEEEe
Confidence 555 66766544
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.19 E-value=4.5 Score=33.88 Aligned_cols=218 Identities=15% Similarity=0.150 Sum_probs=124.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
.+||..-+++...|.|--.|..+|+....--.... ....+..-||+..-++-....|.-.|-++.+ . ..+
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-----~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e--v---t~f 139 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-----SPHGIVVGPDGSAWITDTGLAIGRLDPKTLE--V---TRF 139 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCC-----CCceEEECCCCCeeEecCcceeEEecCcccc--e---EEe
Confidence 77898999999999999999999986654333322 4456777888866665433344444443311 1 111
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
...............|.+ .+++.+++... .---.|.. ...+..+.. ....-+.|+..|+|..-++.- .+..|-..
T Consensus 140 ~lp~~~a~~nlet~vfD~-~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiari 215 (353)
T COG4257 140 PLPLEHADANLETAVFDP-WGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARI 215 (353)
T ss_pred ecccccCCCcccceeeCC-CccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEc
Confidence 111233345577788988 66677776532 11111111 112223322 234567889999999888776 77788777
Q ss_pred eCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe-ecccccccCCeeEEEEcCCCcE
Q 014125 294 DLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW-ISGFQAAADTVNGFSFHPFLPM 368 (430)
Q Consensus 294 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 368 (430)
|.......... ...........+--+|.|+.-++-...+.+..+|-.+... ...+.+....-.++.....++.
T Consensus 216 dp~~~~aev~p--~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 216 DPFAGHAEVVP--QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ccccCCcceec--CCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 77665332211 1122233344555677888888877778888888765442 2233333333444444444443
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.87 E-value=6.7 Score=35.05 Aligned_cols=190 Identities=21% Similarity=0.264 Sum_probs=96.3
Q ss_pred CCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCc---ceEEEEEcCCCCce-EEEec-CC---CeEEEEEcC
Q 014125 183 PTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGM-LAIGS-YS---QTSAIYRED 253 (430)
Q Consensus 183 ~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-l~~~~-~d---g~v~~~d~~ 253 (430)
|...+|++ ..++-+.+||+.... . ..+. .+... -...+.+. +... |++++ .+ .+|++|.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~--l---q~~~---~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE--L---QSLP---VGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E--E---EEE----SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE--E---Eeec---CCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEec
Confidence 33445554 478889999997521 1 1111 11111 11222222 2222 44443 32 469999765
Q ss_pred --CceeeEEeec-------cccCeEEEEE--cc-CCC-EEEEEecCCCeEEEEeCCCC--ceEEEEeecccCCccceEEE
Q 014125 254 --NMELLYVLHG-------QEGGVTHVQF--SR-DGN-YLYTGGRKDPYILCWDLRKA--VQVVYKLYRSSEHTNQRILF 318 (430)
Q Consensus 254 --~~~~~~~~~~-------~~~~i~~~~~--~~-~~~-~l~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~ 318 (430)
++. +..+.. ....++.+|+ +| +|. +.++.. .+|.+..|.+... ......+.+...-.+.+..|
T Consensus 136 ~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 136 PDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC 213 (381)
T ss_dssp TTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred CCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence 333 323221 1124677776 33 455 455555 8999988887521 11211222222334578889
Q ss_pred EEcCCCCEEEEEccCCcEEEEEcCCC-----Ceeccccc--ccCCeeEEEEc--CCCc--EEEEeeCCceeeecCCC
Q 014125 319 DIEPSGRHLGTGGQDGLVHIYDLQTG-----KWISGFQA--AADTVNGFSFH--PFLP--MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 319 ~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~--~~~~v~~~~~~--~~~~--~l~s~~~d~~~~vw~~~ 384 (430)
.......+|..|-++--|.-|+.+.. +.+....+ ....|..|+.- +++. +|++.-.++.+.||+.+
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 99888889999999977888887622 22322222 34467778774 3333 45555557788888654
No 456
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=5.6 Score=33.67 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=101.8
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+++...+..+.-+++.|+.+............. +-..++. -.|++...+ .+.-+.+.|+..+..+. +.
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~-----la 164 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ-----LA 164 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce-----ee
Confidence 3557777777777999999876544333322210 1223333 457777755 57778888998765432 22
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee---EEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
............++.+ ++....+..|+-+.+.|+...... .... ....+.++..+++..+++.. +--+.+
T Consensus 165 grya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy---~egvli 237 (370)
T COG5276 165 GRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY---DEGVLI 237 (370)
T ss_pred eeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc---ccceEE
Confidence 2222222333455664 446677778999999998765322 2222 22367888888776666554 344666
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
-|..+...+...-.........++.+.. .+++...+..+.-+-+-|+.+
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccC
Confidence 6777665332211111111122222333 345555555555555555543
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.57 E-value=2.4 Score=38.46 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=62.3
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee-eeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 130 (430)
....+......+.+|..+|++++.|+...-|.|.++|+..+..+.-.++..-.. ..-+.......- ..-...+.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq-----c~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ-----CGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce-----EEEEEeecccccccccccccC
Confidence 344566667779999999999999888778999999999887665444332100 000000000000 00000000
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeec
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 166 (430)
. .-...--+++-+-.-|.|.||.+..|..+..+..
T Consensus 374 ~-~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 374 S-SSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred C-CCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 0 0000111455667789999999999987666554
No 458
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.34 E-value=2.8 Score=40.19 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=63.0
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...++++.-+|.|+.++.+..||+|++|++.......- + ....+-..+.| .+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski---~---------------~~~~p~~nlv~---------tnh 66 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI---C---------------EEAKPKENLVF---------TNH 66 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh---h---------------hhcCCccceee---------ecc
Confidence 34478899999999999999999999999864422100 0 00112222222 122
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~ 201 (430)
-|+++..|..+.-|.- .|-..+.+..... ......++...|..+.+++.--|-|.-+|.
T Consensus 67 gl~~~tsdrr~la~~~-dgvvqqqfdyndq--sekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 67 GLVTATSDRRALAWKE-DGVVQQQFDYNDQ--SEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred ceEEEeccchhheeec-cCcchhhccccch--hhhhccceecCchhhhhhhhhccceeeehH
Confidence 3667777777777763 3333333332221 112455666777776666443344544543
No 459
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=92.31 E-value=14 Score=37.83 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCC------CcEEEEE------c----CCeEEEEEcCC----CCC
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT------GTKIFAG------Y----NKSVRVFDVHR----PGR 206 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~------~----d~~i~v~d~~~----~~~ 206 (430)
.+.|.+....+.+.+..+..... ++...+..+..... ..+|++| . .|.+.++|+-. +++
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~-E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQEN-EHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred cceeEEecCCccccccccccCcc-ceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 34566666666655554333221 22222222222211 2456643 1 38899999753 333
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc-CCceeeEEeeccccCeEEEEEccCCCEEEEEec
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE-DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
+........-..+...++|..++=-. + .|+++ ....|.+|++ +....+..-- -.-++.-....--+++|+.+.
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV~--G-~l~~~-~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gD- 1155 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEVR--G-HLLSS-QGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGD- 1155 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEec--c-EEEEc-cCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhh-
Confidence 33222111112234456777766432 2 45544 3567899998 4333321110 112233333333455666666
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEEEEEcC
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~ 342 (430)
--..|.+.-........ .+.......-.+.+..|--+| -+++++..|+.|++|-..
T Consensus 1156 V~ksisfl~fqeep~rl-sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRL-SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhceEEEEEccCceEE-EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 55666666655443322 222223344556777776666 357888899999988654
No 460
>PRK13684 Ycf48-like protein; Provisional
Probab=92.00 E-value=8.4 Score=34.17 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=93.6
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
.+.++.|.++ ..++++..+. +|.....+..+....... ...++ ........+ ...+++ ...|.|..= .+.
T Consensus 91 ~l~~v~~~~~-~~~~~G~~g~--i~~S~DgG~tW~~~~~~~-~~~~~--~~~i~~~~~--~~~~~~-g~~G~i~~S-~Dg 160 (334)
T PRK13684 91 RLISISFKGD-EGWIVGQPSL--LLHTTDGGKNWTRIPLSE-KLPGS--PYLITALGP--GTAEMA-TNVGAIYRT-TDG 160 (334)
T ss_pred ceeeeEEcCC-cEEEeCCCce--EEEECCCCCCCeEccCCc-CCCCC--ceEEEEECC--Ccceee-eccceEEEE-CCC
Confidence 4667877654 3455565554 444455555554332110 11122 122223333 223333 344444322 222
Q ss_pred ceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 255 MELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 255 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
++.-..+. ...+.+..+.+.|++.+++++ ..|.+..- .+.+........ ......+..+.+.++++.+++| ..
T Consensus 161 G~tW~~~~~~~~g~~~~i~~~~~g~~v~~g--~~G~i~~s-~~~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~ 234 (334)
T PRK13684 161 GKNWEALVEDAAGVVRNLRRSPDGKYVAVS--SRGNFYST-WEPGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RG 234 (334)
T ss_pred CCCceeCcCCCcceEEEEEECCCCeEEEEe--CCceEEEE-cCCCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cC
Confidence 33222221 224578899999998776655 46655432 122212222221 2445678899999999877765 45
Q ss_pred CcEEEEEcCCCCeeccccc----ccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 334 GLVHIYDLQTGKWISGFQA----AADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
|.+++=..+.+..-..... ....+.++.+.|++..++++ .+|.+.
T Consensus 235 G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 235 GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 7665323444433222221 12357888999987766554 445443
No 461
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.76 E-value=8.8 Score=33.91 Aligned_cols=146 Identities=17% Similarity=0.254 Sum_probs=82.4
Q ss_pred cceEEEEEcCCCCceEEEecCCCe------EEEEEcCC--c--eee-----EEeecccc--------CeEEEEEccCCCE
Q 014125 223 GIMSAIAFSPTHTGMLAIGSYSQT------SAIYREDN--M--ELL-----YVLHGQEG--------GVTHVQFSRDGNY 279 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~dg~------v~~~d~~~--~--~~~-----~~~~~~~~--------~i~~~~~~~~~~~ 279 (430)
+.++.+.+.|+++ .+++.+.+|. +..+++.. + ..+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5688899987444 5555566666 55555443 1 111 11111111 3447888777777
Q ss_pred EEEEecCC------CeEEEEeCCCCceEEEEe-----e-------cccCCccceEEEEEcCCCCEEEEEcc-----CC--
Q 014125 280 LYTGGRKD------PYILCWDLRKAVQVVYKL-----Y-------RSSEHTNQRILFDIEPSGRHLGTGGQ-----DG-- 334 (430)
Q Consensus 280 l~~~~~~d------~~i~i~d~~~~~~~~~~~-----~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg-- 334 (430)
+++.- .+ ..|+.++.. +.. ...+ . .........-+++++|+|+.|+++.+ |+
T Consensus 99 ~is~E-~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSE-GGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeC-CccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 66655 66 778888866 222 1111 0 11234556789999999997666644 22
Q ss_pred c-------EEEE--EcCC-CCeec----cccc-----ccCCeeEEEEcCCCcEEEEe
Q 014125 335 L-------VHIY--DLQT-GKWIS----GFQA-----AADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 335 ~-------i~vw--d~~~-~~~~~----~~~~-----~~~~v~~~~~~~~~~~l~s~ 372 (430)
. ++++ |..+ ++... .+.. ....|..+.+.+++++|+.=
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 1 4444 4444 32222 2222 34578899999999877653
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.69 E-value=0.93 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=21.5
Q ss_pred cccCeEEEEEccCCCEEEEEecCC--CeEEEE
Q 014125 264 QEGGVTHVQFSRDGNYLYTGGRKD--PYILCW 293 (430)
Q Consensus 264 ~~~~i~~~~~~~~~~~l~~~~~~d--~~i~i~ 293 (430)
....-....|+|||+.|+-++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677899999999988777566 666555
No 463
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=5.9 Score=31.68 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=89.1
Q ss_pred CCcEEE-EE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE
Q 014125 184 TGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260 (430)
Q Consensus 184 ~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 260 (430)
+|.++. +| ....|++||+..+.......... ....+ ..++.+ +..+..-.-.+|.-..||.++.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~Fg--EGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFG--EGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccc--cceeec-----cceEEEEEeccceeEEEChHHhhhhcc
Confidence 344444 44 45689999998653322111110 00000 111111 233444445577778888888877766
Q ss_pred eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 261 ~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
+. .++.=..++. |++.|+.+. ....++.-|..+........... ...-..++-+.|- +|...|-.=.+..|...
T Consensus 127 ~~-y~GeGWgLt~--d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 127 FS-YEGEGWGLTS--DDKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cc-cCCcceeeec--CCcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence 65 3444466654 555566665 45566666654432211111110 1111223334443 35555544445556666
Q ss_pred EcCCCCeecccc------------cccCCeeEEEEcCCC-cEEEEe
Q 014125 340 DLQTGKWISGFQ------------AAADTVNGFSFHPFL-PMAASS 372 (430)
Q Consensus 340 d~~~~~~~~~~~------------~~~~~v~~~~~~~~~-~~l~s~ 372 (430)
+..+|+.+..+. .+....+.|++.|++ ++++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 666666544332 344567899999987 455665
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.57 E-value=4.3 Score=29.90 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred EEEcCCCCceEEEecCCCeEEEEEcCCce--------eeEEeeccccCeEEEEEcc-----CCCEEEEEecCCCeEEEEe
Q 014125 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME--------LLYVLHGQEGGVTHVQFSR-----DGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~~d~~i~i~d 294 (430)
-.|.. ....|++++..|+|.|++..... .+..+. -...|++++-.+ ....|+.+ ....|..||
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG--t~t~llaYD 79 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG--TQTSLLAYD 79 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe--ccceEEEEE
Confidence 34554 33478888889999999865332 333333 345677776544 23455555 478899999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcC----CCCEEEEEccCCcEEEEEcCCCCe
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
+.......++ .-...+.++.+-. ...++++| .+..|.-||..-.+.
T Consensus 80 V~~N~d~Fyk-----e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 80 VENNSDLFYK-----EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred cccCchhhhh-----hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 9987655433 2335566665532 23344444 456677777654443
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.31 E-value=3.5 Score=32.45 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=23.6
Q ss_pred cCeEEEEEccCC-----C-EEEEEecCCCeEEEEeCCC
Q 014125 266 GGVTHVQFSRDG-----N-YLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 266 ~~i~~~~~~~~~-----~-~l~~~~~~d~~i~i~d~~~ 297 (430)
..+.+++|||.| + .|++.. .++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLT-s~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLT-SNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEc-CCCeEEEEecCC
Confidence 378999999954 3 456666 899999997654
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.18 E-value=1.4 Score=24.71 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=28.0
Q ss_pred CCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 232 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
|++..++++...+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 345556666667899999999888887777652 33344544
No 467
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=4.4 Score=41.54 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=89.6
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE--------ccCCCEEEEEecCCCeEEEEeCCC
Q 014125 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF--------SRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
..+-+-|.=++.. .+.|..+.+|+..++.....+.+....|..+.. -|.=+++++.+ .--.|.++-+.-
T Consensus 82 ~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEe
Confidence 3444444333333 345899999999987777777766666666553 23334555554 455666654432
Q ss_pred Cc----e-EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE--EEcCCC---C-e----------------eccc
Q 014125 298 AV----Q-VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI--YDLQTG---K-W----------------ISGF 350 (430)
Q Consensus 298 ~~----~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v--wd~~~~---~-~----------------~~~~ 350 (430)
.. . .....+........|+++....+|+.+++|- ||.|+= |....+ + + +..+
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 11 1 0000111123356788888888888777664 553332 222211 0 0 1122
Q ss_pred c-cccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 351 Q-AAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 351 ~-~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
. .+.++|..++.....+.|.+-+..+.+.+|+.
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEc
Confidence 2 45679999999998889999888888888865
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.69 E-value=1.1 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 322 PSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 322 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
|++++|+++. .++.|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666655 5788999999988887777653 23344444
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.08 E-value=6.1 Score=29.13 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=63.7
Q ss_pred CCCceEEEEeCCCcEEEEeccCCc--------eeeeeecccccccccceEEEE---ECC--CCcEEEEEcCCeEEEEEcC
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGL--------LRCTYRAYDAVDEITAAFSVA---FNP--TGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~d~~i~v~d~~ 202 (430)
.....|+.++.-|.|.|++..... .+..+.... .|++++ |.| ....|+.|....|..||+.
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------EITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC------ceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 334478888888999999876432 223333222 555654 432 3467778999999999998
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCceeeEE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYV 260 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~ 260 (430)
.....+. +.-...+.++.+..- ...-++..+.+..|.-||....+....
T Consensus 82 ~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhh---------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 7533211 122244666655321 122344444467777777765555443
No 470
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=28 Score=36.12 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=25.4
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLP 90 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~ 90 (430)
....++|+|...++|.++..|.|++|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45678999999999999999999999654
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.43 E-value=3.1 Score=39.93 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=28.2
Q ss_pred cceEEEEEcC----CCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 313 NQRILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 313 ~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
.....+++++ +..+|++.+.|+.+|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566666 6789999999999999999999985543
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.98 E-value=12 Score=31.15 Aligned_cols=137 Identities=13% Similarity=0.022 Sum_probs=70.9
Q ss_pred EEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCC--ceEEEEeecccCCccceEEEEEcC
Q 014125 247 SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKA--VQVVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 247 v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
-.+||+.+++...........+.+-.+-+||+.|.+|+..+| .+++++.... ................--+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888776543222222334445567899999999885453 4788876541 011111100011222223345567
Q ss_pred CCCEEEEEccCC-cEEEEEcCCC--Ceec--ccccc----cCC-eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 323 SGRHLGTGGQDG-LVHIYDLQTG--KWIS--GFQAA----ADT-VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 323 ~~~~l~~~~~dg-~i~vwd~~~~--~~~~--~~~~~----~~~-v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
||+.|+.|+.+. ...+|.-... .... .+..- ... =--+...|+|++++.+..+..+.=|..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~ 198 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKT 198 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCC
Confidence 999999888874 3445554211 1111 11100 001 113455789999988876655554433
No 473
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=88.79 E-value=15 Score=31.99 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=38.5
Q ss_pred CceEEEEeCCCcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcEEEE--EcCCeEEEEEcCC
Q 014125 138 SCVFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDVHR 203 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~d~~i~v~d~~~ 203 (430)
+++|+.|.++| +.+.++.. ++..+.+. ...|.++...+....|++ +....++++++..
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~-------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLIG-------RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEecC-------cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 36899999999 66666654 22332222 127888888888777763 3445599999853
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.62 E-value=14 Score=31.64 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=65.8
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-----cCCCeEEEEeCCCCceEEEEeec-c-cCCccceEE
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-----RKDPYILCWDLRKAVQVVYKLYR-S-SEHTNQRIL 317 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~d~~i~i~d~~~~~~~~~~~~~-~-~~~~~~v~~ 317 (430)
..|.+||..+.+-...-.+-.+.|+.+.|..+.+.+++|. .....+..||+.+..-. .+.. . ..-.+++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~--~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS--SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee--ecCCcccccCCCcEEE
Confidence 4689999877665554445667899999985555554443 13567888998876321 2111 0 123467777
Q ss_pred EEEcC-CC-CEEEEEc-cCC--cEEEEEcCCCCeecc-cccccCCeeEEEEcC
Q 014125 318 FDIEP-SG-RHLGTGG-QDG--LVHIYDLQTGKWISG-FQAAADTVNGFSFHP 364 (430)
Q Consensus 318 ~~~~~-~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~ 364 (430)
+.+.. ++ ++.+.|. .+| .|..||=.+...+.. .......|.++.+-|
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 76633 33 3444443 333 466776555544443 222234555555433
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=4 Score=37.47 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEe---CCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFS---LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.|..+..++.|..+|-+|.+|.+.++= +.......+-+....-....-....+.....-.+...+|+|. |-..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~----S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPS----SILD 180 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCC----ccCC
Q ss_pred ceEEEEeCCCcEEEEeccC
Q 014125 139 CVFASTTRDHPIHLWDATT 157 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~ 157 (430)
..|..-+.|..|++|++..
T Consensus 181 ~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred ceEEEEecCcEEEEEecCC
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.47 E-value=21 Score=35.00 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=60.4
Q ss_pred eEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
-..+.|-|.|..+++.+ .|| .|.++.-+....-. .....+........+|+-....++.+ ..+.+.+|-..
T Consensus 249 e~~LSWkpqgS~~ati~-td~~~~S~~ViFfErNGLrHGe--f~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 249 EHQLSWKPQGSKYATIG-TDGCSTSESVIFFERNGLRHGE--FDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred hhccccccCCceeeeec-cCCCCCcceEEEEccCCcccCC--ccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 34589999999999987 555 35555433221110 00001233445556666554444443 45679999877
Q ss_pred CCCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeec
Q 014125 343 TGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVD 381 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw 381 (430)
+..........-..+.-+.|+|... .|...+.....+|.
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred ceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence 6554333333334567789999654 33333334444443
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.80 E-value=1.9 Score=23.69 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred CCCceeEEEECcCCceEEEecC-C--CeEEEE
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSE-D--KTLRIF 87 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~-d--g~v~iw 87 (430)
....-....|||||+.|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445778999999998876654 4 555555
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.80 E-value=17 Score=31.24 Aligned_cols=118 Identities=12% Similarity=0.222 Sum_probs=65.6
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-------CCeEEEEEcCCCCCcccccccccCCC-C
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-------NKSVRVFDVHRPGRDFEKYSTLKGNK-E 219 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~~~-~ 219 (430)
..|++||..+.+....-.... +.|.++.|..+.+++++|. ...+..||+.... + ..+.... .
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~-----G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w---~~~~~~~s~ 85 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGIS-----GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--W---SSLGGGSSN 85 (281)
T ss_pred CEEEEEECCCCEeecCCCCce-----EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--e---eecCCcccc
Confidence 459999998876654433333 3899999987777777652 3457788886531 1 1111100 1
Q ss_pred CCCcceEEEEEcCCC-CceEEEec-CC--CeEEEEEcCCceeeEE-eeccccCeEEEEEcc
Q 014125 220 GQAGIMSAIAFSPTH-TGMLAIGS-YS--QTSAIYREDNMELLYV-LHGQEGGVTHVQFSR 275 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~-~~~l~~~~-~d--g~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~ 275 (430)
.-.+++..+.+...+ .++.+.|. .+ ..|..||-.+...+.. .......|..+.+-|
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 234678888775433 34554544 23 3466676555544433 222234455555433
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.70 E-value=13 Score=30.02 Aligned_cols=144 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred eEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEEE----cCC---eEEEE-EcCCC---CC
Q 014125 140 VFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNK---SVRVF-DVHRP---GR 206 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~---~i~v~-d~~~~---~~ 206 (430)
.|+.+...+.|.+|++... +....+... +.|..+.++..|++|++= ... .+|+| +.+.. ..
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 4444466677999999833 344444433 388999999999999963 122 56765 22211 11
Q ss_pred ccc--ccc-------------cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eE-----Eee---
Q 014125 207 DFE--KYS-------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LY-----VLH--- 262 (430)
Q Consensus 207 ~~~--~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~-----~~~--- 262 (430)
+.. ... .+....-+-..++.+++.-|..+++++ |+ ++++.+|.+..... .. .+.
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhh
Confidence 110 000 000000122345777887785555544 43 56788887654332 11 111
Q ss_pred --cccc-CeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 263 --GQEG-GVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 263 --~~~~-~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
.|.+ ....+++. +.++|..+ +..++++.+
T Consensus 182 ~~~~~~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred hheecCceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 1111 23445553 45676664 667777654
No 480
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.21 E-value=19 Score=31.17 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=85.7
Q ss_pred eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee
Q 014125 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC 162 (430)
Q Consensus 83 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 162 (430)
.|.+||+.+++.......+..... ..+.+..+........ ..++-..++=+..+-|.|+|+.+++..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~-----------~~s~lndl~VD~~~~~-~~~~~aYItD~~~~glIV~dl~~~~s~R 102 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP-----------PDSFLNDLVVDVRDGN-CDDGFAYITDSGGPGLIVYDLATGKSWR 102 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS------------TCGGEEEEEEECTTTT-S-SEEEEEEETTTCEEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcc-----------cccccceEEEEccCCC-CcceEEEEeCCCcCcEEEEEccCCcEEE
Confidence 688889888876544433321111 2233444444221000 0012223343444579999999987665
Q ss_pred eeecccccc--------------cccceEEEEECC---CCcEEEEEcCCeEEEEEcCC-----CCCcccc--cccccCCC
Q 014125 163 TYRAYDAVD--------------EITAAFSVAFNP---TGTKIFAGYNKSVRVFDVHR-----PGRDFEK--YSTLKGNK 218 (430)
Q Consensus 163 ~~~~~~~~~--------------~~~~v~~~~~~~---~~~~l~~~~d~~i~v~d~~~-----~~~~~~~--~~~~~~~~ 218 (430)
......... ....+..++.+| +++.|.-+.=..-++|.+.+ +...... ....+ .
T Consensus 103 v~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~--~ 180 (287)
T PF03022_consen 103 VLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQ--D 180 (287)
T ss_dssp EETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-E--E
T ss_pred EecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccce--e
Confidence 544322111 112345555554 55555532111222333321 1110000 00000 0
Q ss_pred CCC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc----e--eeEEeeccccCeEEEEEcc--CCCEEEEEe
Q 014125 219 EGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----E--LLYVLHGQEGGVTHVQFSR--DGNYLYTGG 284 (430)
Q Consensus 219 ~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~--~~~~~~~~~~~i~~~~~~~--~~~~l~~~~ 284 (430)
.+. ......+++++ .+.++++--..+.|..|+..+. . .+..-...-..+..+.+.+ +|.+.+.+.
T Consensus 181 lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 181 LGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 111 13456788888 7778888888999999998762 1 1211111124678888888 665544443
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.98 E-value=17 Score=30.39 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred EEEEcCCCCceEEEecC-C--CeEEEEEcCC----ceee---EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 227 AIAFSPTHTGMLAIGSY-S--QTSAIYREDN----MELL---YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~-d--g~v~~~d~~~----~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
+-.+.| ++.++.+|+. + ..+++++..+ .... ..+. ....-.....-|||+.|+.||.......+|.-.
T Consensus 71 gg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 71 GGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCc
Confidence 335667 5678887765 2 3477887544 1111 0111 223344555678999999999544455566543
Q ss_pred CCce-EE-EEeecc---cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 297 KAVQ-VV-YKLYRS---SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 297 ~~~~-~~-~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
.... .. ..+... ......--.+...|+|++++.+..+. .|||..+.+.++.+..
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 2111 11 111100 01111122456679999998887754 5678888877666654
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.90 E-value=15 Score=29.75 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=35.4
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
+.|+.+. ..+.|.+|++.+........+ ..-+.|..+.++..|.||++--.+
T Consensus 29 d~Lfva~-~g~~Vev~~l~~~~~~~~~~F---~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAA-SGCKVEVYDLEQEECPLLCTF---STVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEc-CCCEEEEEEcccCCCceeEEE---cchhheeEEEeccccceEEEEEee
Confidence 4454445 678899999984333222221 234788999999999999987554
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.60 E-value=27 Score=32.38 Aligned_cols=109 Identities=12% Similarity=0.033 Sum_probs=59.8
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE-Eeecc--cCCccceEEEEEcCCC------CEEEEEc-----
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY-KLYRS--SEHTNQRILFDIEPSG------RHLGTGG----- 331 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~------~~l~~~~----- 331 (430)
...+.|+|.|+|+.|++-- ..|.|++++..+...... .+... .........++++|+- .+|....
T Consensus 30 ~~Pw~maflPDG~llVtER-~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTER-ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEe-cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 4568999999997666543 369999998655432111 11100 1135678899999874 2333321
Q ss_pred -----cCCcEEEEEcCCC-------Ce-eccccc-ccCCeeEEEEcCCCcEEEEeeCC
Q 014125 332 -----QDGLVHIYDLQTG-------KW-ISGFQA-AADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 332 -----~dg~i~vwd~~~~-------~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
....|.-|.+... +. +..+.. ....-..|+|.|+|.+.++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233544554321 11 111111 11234578899999877765543
No 484
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=40 Score=34.07 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=42.6
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeee-------ecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTY-------RAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
..|+.+..|+.+|.+.+|.+......... ...... ...+|..+...+.-..+.+-.|+.|.++++...
T Consensus 24 ~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~-~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 24 AYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEF-SKKPINKLLVCASLELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred HhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhh-ccchhHHHhhcchhcchheecCCcceeeecCcc
Confidence 35789999999999999998654211110 000000 122555555555556666778888999988763
No 485
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.22 E-value=5.5 Score=26.89 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=34.3
Q ss_pred CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
+.|..||..+.+ .... --...+.|.++|++++|++++...+.|++|..+.
T Consensus 36 ~~Vvyyd~~~~~--~va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVK--VVAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeE--Eeec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 456666654322 1222 2234578999999999999987889999998653
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.90 E-value=26 Score=32.37 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
.|.+++..+..+.|++.+.++.|.+|+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 38888888888899999988888888653
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.84 E-value=27 Score=32.27 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=25.1
Q ss_pred ccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
...|..+...+..+.+++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34488899999889999999999999999974
No 488
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.62 E-value=27 Score=31.52 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=104.3
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.++.+..+|.|.-.|..++..+.......... .+..-.+..+|+.++++.++.++.+|.+++...+.....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~---~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~------ 140 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVA---QLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVG------ 140 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcce---eccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecC------
Confidence 45556888889999999988665444332000 122222233788777778888888888654333221111
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---cCeEEEEEccCCCEEEEEecC--CCeEEEEe
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---GGVTHVQFSRDGNYLYTGGRK--DPYILCWD 294 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d 294 (430)
.. ..+..-... ....+..++.++.+...|..+++......... ..+..--.. ....++.+. . ++.+.-.|
T Consensus 141 ~~-~~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~-~~~~~~~~a~~ 215 (370)
T COG1520 141 GS-PYYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGS-DGYDGILYALN 215 (370)
T ss_pred CC-eEEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEec-CCCcceEEEEE
Confidence 10 011111221 22245555578999999988888766654321 111111111 233455555 4 55677777
Q ss_pred CCCCceEEEEeecccCCccce-EEEEEcC----CCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 295 LRKAVQVVYKLYRSSEHTNQR-ILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v-~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
..++................+ ....+.. .+.-+..++.++.+...|..+++.+..+...
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 776654432111101111101 0001100 0223456677888999999999988877754
No 489
>PLN02193 nitrile-specifier protein
Probab=85.49 E-value=32 Score=32.29 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=54.1
Q ss_pred CCceEEEecCCC-----eEEEEEcCCceeeEEee-----ccccCeEEEEEccCCCEEEEEecCC----CeEEEEeCCCCc
Q 014125 234 HTGMLAIGSYSQ-----TSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGNYLYTGGRKD----PYILCWDLRKAV 299 (430)
Q Consensus 234 ~~~~l~~~~~dg-----~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~d----~~i~i~d~~~~~ 299 (430)
+..+++.|+.++ .+..||+.+.+-...-. ........+. -+++.++.++ .+ ..+.+||+.+..
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG-~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWVVYG-FNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEEEEC-CCCCccCceEEEECCCCE
Confidence 456777777543 46778877654321110 0111111222 2566666666 44 468899988764
Q ss_pred eEEEEeec-ccCCccceEEEEEcCCCCEEEEEccC--------------CcEEEEEcCCCCe
Q 014125 300 QVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGGQD--------------GLVHIYDLQTGKW 346 (430)
Q Consensus 300 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~vwd~~~~~~ 346 (430)
-....... .........++. -++++++.|+.. +.+.++|+.+.+.
T Consensus 355 W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 355 WTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred EEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 32111100 001111112222 246677777753 2478888887654
No 490
>PLN02153 epithiospecifier protein
Probab=84.60 E-value=29 Score=30.93 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=14.9
Q ss_pred CceEEEEeCC-------CcEEEEeccCCcee
Q 014125 138 SCVFASTTRD-------HPIHLWDATTGLLR 161 (430)
Q Consensus 138 ~~~l~~~~~d-------g~i~vwd~~~~~~~ 161 (430)
+.+++.|+.+ ..+.+||+.+.+..
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 63 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWS 63 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEE
Confidence 4456666542 35788888776543
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.34 E-value=35 Score=31.67 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=41.1
Q ss_pred CCEEEEEccCCcEEEEEcCCCC--e----ecccccccCCeeEEEEcCCC-cEEEEeeCCceeeecCCCccccccCCCcEE
Q 014125 324 GRHLGTGGQDGLVHIYDLQTGK--W----ISGFQAAADTVNGFSFHPFL-PMAASSSGHRRFPVDDFEDLHLSGDENCVS 396 (430)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~~--~----~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~ 396 (430)
|.+|+++-..+.|....++... . ...+.. .+.|+.+...||| .+.+..+..|.+.=-+.....+-.+-|.|-
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~~~~~~~~~~~~~~~~~ 447 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQKDDGSVTNTLENPGSII 447 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCccccCCCCceeEecCCCeEE
Confidence 4556666566667777775432 1 122333 5689999999997 555555555555433333233333344444
Q ss_pred EEe
Q 014125 397 VWS 399 (430)
Q Consensus 397 ~w~ 399 (430)
++.
T Consensus 448 ~~~ 450 (454)
T TIGR03606 448 VFT 450 (454)
T ss_pred EEE
Confidence 443
No 492
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.83 E-value=31 Score=30.75 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=8.5
Q ss_pred CeEEEEEcCCce
Q 014125 245 QTSAIYREDNME 256 (430)
Q Consensus 245 g~v~~~d~~~~~ 256 (430)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888887654
No 493
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=83.29 E-value=30 Score=30.04 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=51.4
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC--------------------Cc
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD--------------------GL 335 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------g~ 335 (430)
+|+..++-+ ..|.+.-+|..++...... .-.+....++|. |+++++|-+. .-
T Consensus 212 dgrLwvlds-gtGev~~vD~~~G~~e~Va-----~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG 283 (335)
T TIGR03032 212 QGKLWLLNS-GRGELGYVDPQAGKFQPVA-----FLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCG 283 (335)
T ss_pred CCeEEEEEC-CCCEEEEEcCCCCcEEEEE-----ECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence 455555555 7899999998766433222 123345667776 7777665421 23
Q ss_pred EEEEEcCCCCeeccccc--ccCCeeEEEEcCCC
Q 014125 336 VHIYDLQTGKWISGFQA--AADTVNGFSFHPFL 366 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~ 366 (430)
|.|.|+++|..+..++- --..+.+++.-|.-
T Consensus 284 v~vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 284 VAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 77888888888776652 23356677777753
No 494
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.06 E-value=10 Score=36.45 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=41.2
Q ss_pred CCceEEEecCCCeEEEEEcCC----ceeeEE--eec--------------------cccCeEEEEEcc----CCCEEEEE
Q 014125 234 HTGMLAIGSYSQTSAIYREDN----MELLYV--LHG--------------------QEGGVTHVQFSR----DGNYLYTG 283 (430)
Q Consensus 234 ~~~~l~~~~~dg~v~~~d~~~----~~~~~~--~~~--------------------~~~~i~~~~~~~----~~~~l~~~ 283 (430)
+...++++..||.+....... +..... +.. .......+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556888888999988887664 111111 110 113455666666 67789899
Q ss_pred ecCCCeEEEEeCCCCce
Q 014125 284 GRKDPYILCWDLRKAVQ 300 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~ 300 (430)
+ .|+.+|+||+.+...
T Consensus 237 ~-~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 S-RDHTLRIWSLETGQC 252 (547)
T ss_dssp E-TTSEEEEEETTTTCE
T ss_pred e-CCCeEEEEECCCCeE
Confidence 9 999999999999866
No 495
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.93 E-value=2.9 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEccCCcEEEEEcCCCCeecc
Q 014125 326 HLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 326 ~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
.++.++.+|.+..+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999999987654
No 496
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.64 E-value=34 Score=30.21 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCceEEEecC-----CCeEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEEEecCCC----eEEEEeCCCCc
Q 014125 234 HTGMLAIGSY-----SQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDP----YILCWDLRKAV 299 (430)
Q Consensus 234 ~~~~l~~~~~-----dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~----~i~i~d~~~~~ 299 (430)
++.+++.|+. ...+..||+.+.+-.. .+... ......+..-+++..+.++ .++ .+.+||..+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence 4557777764 2468888987654322 12111 1111222233555555565 543 35678887653
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.59 E-value=39 Score=30.87 Aligned_cols=142 Identities=9% Similarity=0.027 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce----
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ---- 300 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~---- 300 (430)
...+...+ ++.+++++.....++-||-....-...-......++++.|.+++..++++ .+|.+..-+ ..+..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g--~~G~l~~S~-d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT--RGGGLYVSK-GTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe--CCceEEEec-CCCCccccc
Confidence 34445556 44455555433323333332110011112234578999999999877766 466654432 22211
Q ss_pred EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEee
Q 014125 301 VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 301 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..... ........+..+.|.+++..+++| ..|.+.... +.|+.-...+ .-......+.|.++++.+++|.
T Consensus 317 ~f~~~-~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 317 DFEEA-DIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred ceeec-ccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 11111 101122458889999887766555 667666553 4444322222 2234678999988777666653
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.32 E-value=62 Score=33.08 Aligned_cols=179 Identities=12% Similarity=0.173 Sum_probs=100.9
Q ss_pred cEEEEeccCCceeeeeecccccccccceEEEEECCCCcE--EEEE------------cCCeEEEEEcCCCCCcccccccc
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAG------------YNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~------------~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
.|++.|..+++.+..+..... .....+..+.|+..... ++++ .+|.++.|++-..+..++....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~- 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK- 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec-
Confidence 388888888887777665544 33335667777655433 3332 1245777776655443322211
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
..-.+++.+ ..|..+ ++++ +....+++||+...++++... .-...|+.+++ .+..++++. ..-.+.+
T Consensus 932 ----T~~~~~v~A--i~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD-~qeSV~~ 1000 (1205)
T KOG1898|consen 932 ----TEIPGPVGA--ICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGD-IQESVHF 1000 (1205)
T ss_pred ----cCCCccceE--EeccCC-EEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEee-ccceEEE
Confidence 122334444 445344 4443 346789999998877655433 22456777777 566788888 4445555
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
+..+........+.. ......++++.+- |-..+|.|..=|.+.+-.+.
T Consensus 1001 ~~y~~~~n~l~~fad-D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1001 VRYRREDNQLIVFAD-DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEecCCCeEEEEeC-CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 544443333333322 3334456665544 34567777777877777654
No 499
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=81.69 E-value=12 Score=37.37 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=54.8
Q ss_pred eEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEE-EecCCC-----eEEEEeCCCCceEEEEeeccc
Q 014125 237 MLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYT-GGRKDP-----YILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~-~~~~d~-----~i~i~d~~~~~~~~~~~~~~~ 309 (430)
+.......+.+.+-|......... +. +..+|.+-+|||||+.|+- .+ .++ .|++-++++......++.
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts-~e~~~g~s~vYv~~L~t~~~~~vkl~--- 395 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTG-IEGLPGKSSVYVRNLNASGSGLVKLP--- 395 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEe-ecCCCCCceEEEEehhccCCCceEee---
Confidence 333333445888888876555544 43 6788999999999999988 44 444 588888887654433332
Q ss_pred CCccceEEEEEcCCCCE
Q 014125 310 EHTNQRILFDIEPSGRH 326 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~ 326 (430)
-....|..-...++|..
T Consensus 396 ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 396 VENAAIPRWRVLENGDT 412 (912)
T ss_pred cccccccceEecCCCCe
Confidence 23445555666666654
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.28 E-value=14 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=33.8
Q ss_pred EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 239 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
+.+..+|.+..||..+++....+.+- .-.+.|++++|+.+++.+-.....|
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceE
Confidence 33556789999999998876555543 4568999999999888775333333
Done!