Query 014125
Match_columns 430
No_of_seqs 718 out of 2594
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 05:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 9E-50 3.1E-54 353.6 40.2 291 51-382 46-340 (340)
2 1vyh_C Platelet-activating fac 100.0 7.8E-50 2.7E-54 362.8 38.2 288 53-383 101-409 (410)
3 3ow8_A WD repeat-containing pr 100.0 9.3E-49 3.2E-53 343.6 37.3 290 52-382 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 2.9E-48 9.9E-53 345.5 39.8 292 51-382 55-354 (354)
5 1nr0_A Actin interacting prote 100.0 6.3E-47 2.2E-51 361.2 43.5 355 52-423 51-590 (611)
6 2ynn_A Coatomer subunit beta'; 100.0 4.5E-47 1.5E-51 330.9 38.0 284 52-376 5-294 (304)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-46 8.5E-51 332.1 37.8 307 51-407 6-340 (345)
8 3iz6_a 40S ribosomal protein R 100.0 5.2E-47 1.8E-51 341.0 33.1 298 51-381 57-371 (380)
9 4gqb_B Methylosome protein 50; 100.0 2.5E-46 8.7E-51 330.4 32.7 300 57-403 27-332 (344)
10 4g56_B MGC81050 protein; prote 100.0 3.4E-46 1.2E-50 332.4 33.3 298 56-406 38-347 (357)
11 3frx_A Guanine nucleotide-bind 100.0 3.5E-45 1.2E-49 321.1 39.2 285 51-375 8-307 (319)
12 4ery_A WD repeat-containing pr 100.0 5.9E-45 2E-49 319.2 40.2 280 51-373 14-298 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 7E-45 2.4E-49 322.7 41.1 291 51-376 12-331 (343)
14 1nr0_A Actin interacting prote 100.0 1.1E-44 3.6E-49 345.9 39.8 306 57-404 15-399 (611)
15 2hes_X YDR267CP; beta-propelle 100.0 1.5E-44 5E-49 318.7 37.3 298 51-383 5-326 (330)
16 1erj_A Transcriptional repress 100.0 1.9E-44 6.6E-49 325.8 37.8 301 58-381 62-385 (393)
17 4aow_A Guanine nucleotide-bind 100.0 4.9E-43 1.7E-47 311.0 41.5 298 52-404 30-339 (340)
18 2ymu_A WD-40 repeat protein; u 100.0 1.6E-43 5.6E-48 336.7 41.1 299 52-399 254-577 (577)
19 2ymu_A WD-40 repeat protein; u 100.0 3.4E-43 1.2E-47 334.5 41.8 322 52-424 213-559 (577)
20 1vyh_C Platelet-activating fac 100.0 4.1E-43 1.4E-47 318.7 36.3 262 113-400 102-409 (410)
21 3zwl_B Eukaryotic translation 100.0 2.2E-42 7.7E-47 310.2 40.7 305 51-409 23-353 (369)
22 2pm9_A Protein WEB1, protein t 100.0 1E-43 3.6E-48 324.3 29.3 293 60-383 12-335 (416)
23 3dm0_A Maltose-binding peripla 100.0 2.7E-42 9.3E-47 334.6 39.6 295 53-383 375-691 (694)
24 2ynn_A Coatomer subunit beta'; 100.0 8E-42 2.7E-46 297.7 35.1 244 114-382 8-256 (304)
25 4e54_B DNA damage-binding prot 100.0 1.6E-42 5.6E-47 317.6 31.3 296 51-381 110-426 (435)
26 3ow8_A WD repeat-containing pr 100.0 7.9E-42 2.7E-46 299.6 33.6 264 116-401 29-320 (321)
27 1sq9_A Antiviral protein SKI8; 100.0 1.7E-41 5.8E-46 307.7 36.8 309 51-403 7-396 (397)
28 4gqb_B Methylosome protein 50; 100.0 5.6E-42 1.9E-46 302.7 32.0 268 118-401 29-308 (344)
29 1got_B GT-beta; complex (GTP-b 100.0 2.6E-41 8.9E-46 299.3 36.4 262 115-399 51-340 (340)
30 1gxr_A ESG1, transducin-like e 100.0 1.1E-41 3.9E-46 301.7 34.0 305 58-401 7-336 (337)
31 1gxr_A ESG1, transducin-like e 100.0 8E-41 2.7E-45 296.3 39.1 286 56-383 47-335 (337)
32 3ei3_B DNA damage-binding prot 100.0 3.9E-41 1.3E-45 303.8 34.8 294 51-383 64-380 (383)
33 3vl1_A 26S proteasome regulato 100.0 1.4E-41 5E-46 310.5 30.4 279 61-383 57-363 (420)
34 4a11_B DNA excision repair pro 100.0 1.4E-40 4.6E-45 302.8 35.9 324 52-401 35-404 (408)
35 3i2n_A WD repeat-containing pr 100.0 5.3E-41 1.8E-45 299.9 32.5 297 54-381 12-349 (357)
36 3k26_A Polycomb protein EED; W 100.0 1E-41 3.4E-46 305.6 27.6 301 54-383 12-364 (366)
37 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-40 4E-45 299.4 34.5 298 55-405 3-364 (372)
38 1r5m_A SIR4-interacting protei 100.0 7.5E-41 2.6E-45 306.1 33.2 285 59-383 107-423 (425)
39 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-40 3.9E-45 329.2 36.1 212 56-301 13-246 (902)
40 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-40 7.7E-45 341.7 38.8 326 54-423 609-1012(1249)
41 2pbi_B Guanine nucleotide-bind 100.0 7.2E-40 2.5E-44 291.4 36.5 250 114-383 59-313 (354)
42 1r5m_A SIR4-interacting protei 100.0 3.3E-40 1.1E-44 301.8 34.3 298 56-383 41-359 (425)
43 3odt_A Protein DOA1; ubiquitin 100.0 9.5E-40 3.3E-44 286.3 35.4 291 50-409 8-303 (313)
44 2pm9_A Protein WEB1, protein t 100.0 7.5E-41 2.6E-45 305.3 28.9 298 57-383 64-412 (416)
45 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-40 1.2E-44 340.3 37.4 334 52-414 649-1086(1249)
46 4h5i_A Guanine nucleotide-exch 100.0 2.9E-40 9.8E-45 294.9 31.8 302 61-381 15-339 (365)
47 4g56_B MGC81050 protein; prote 100.0 1.8E-40 6.3E-45 295.4 29.9 300 64-401 9-320 (357)
48 3gre_A Serine/threonine-protei 100.0 1.5E-40 5.2E-45 305.3 30.0 300 52-381 54-436 (437)
49 3dwl_C Actin-related protein 2 100.0 2.6E-41 9E-46 304.2 23.3 252 55-342 6-280 (377)
50 4aez_A CDC20, WD repeat-contai 100.0 2.7E-39 9.4E-44 293.2 36.0 295 56-412 87-390 (401)
51 1erj_A Transcriptional repress 100.0 2.2E-39 7.4E-44 292.8 34.5 269 116-403 61-390 (393)
52 2pm7_B Protein transport prote 100.0 3.1E-39 1E-43 280.4 33.5 257 54-342 3-284 (297)
53 4ery_A WD repeat-containing pr 100.0 4.8E-39 1.6E-43 281.6 34.0 245 114-383 18-266 (312)
54 3dw8_B Serine/threonine-protei 100.0 1.8E-39 6.2E-44 299.1 32.5 301 57-376 25-438 (447)
55 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-39 1.6E-43 318.4 36.7 281 52-373 5-291 (814)
56 3iz6_a 40S ribosomal protein R 100.0 1.8E-39 6.3E-44 291.9 30.3 252 115-383 62-327 (380)
57 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-40 1.2E-44 305.3 26.3 278 59-369 132-458 (524)
58 2oaj_A Protein SNI1; WD40 repe 100.0 5.8E-40 2E-44 324.1 28.4 339 59-413 97-675 (902)
59 1pgu_A Actin interacting prote 100.0 9.7E-39 3.3E-43 306.2 35.3 306 57-401 15-365 (615)
60 1pgu_A Actin interacting prote 100.0 8.7E-39 3E-43 306.5 34.6 315 52-404 55-404 (615)
61 3bg1_A Protein SEC13 homolog; 100.0 9.4E-40 3.2E-44 286.2 25.2 254 55-342 8-292 (316)
62 3v7d_B Cell division control p 100.0 3.7E-38 1.3E-42 291.7 37.2 287 53-383 114-419 (464)
63 4gga_A P55CDC, cell division c 100.0 5.5E-38 1.9E-42 286.3 37.8 284 62-406 107-399 (420)
64 2hes_X YDR267CP; beta-propelle 100.0 1.8E-38 6.1E-43 279.8 31.4 270 115-402 10-328 (330)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.8E-38 3.4E-42 287.1 37.6 277 52-384 110-390 (445)
66 1yfq_A Cell cycle arrest prote 100.0 2.4E-38 8.3E-43 281.0 31.4 295 53-382 4-321 (342)
67 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-38 9.9E-43 281.1 31.2 311 54-409 5-344 (351)
68 4ggc_A P55CDC, cell division c 100.0 1.9E-37 6.5E-42 272.3 36.0 278 62-383 27-313 (318)
69 3dwl_C Actin-related protein 2 100.0 3.2E-39 1.1E-43 290.7 24.9 244 118-381 10-278 (377)
70 3frx_A Guanine nucleotide-bind 100.0 1.4E-37 4.8E-42 272.7 32.9 250 52-344 57-318 (319)
71 2pm7_B Protein transport prote 100.0 1.5E-37 5.1E-42 269.8 32.7 247 115-380 5-280 (297)
72 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-37 4.6E-42 275.9 33.0 261 55-350 56-342 (345)
73 3vl1_A 26S proteasome regulato 100.0 4.2E-38 1.4E-42 287.5 30.2 287 56-382 94-416 (420)
74 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-37 2.3E-41 280.5 33.3 282 54-406 127-418 (435)
75 3mmy_A MRNA export factor; mRN 100.0 1.4E-36 4.7E-41 272.4 33.6 290 48-381 27-342 (368)
76 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-36 1.5E-40 276.1 36.0 287 52-403 151-443 (445)
77 3v7d_B Cell division control p 100.0 4.9E-36 1.7E-40 277.5 35.9 281 52-376 154-454 (464)
78 2xzm_R RACK1; ribosome, transl 100.0 1.2E-36 4.2E-41 269.7 30.3 253 52-344 68-341 (343)
79 3jrp_A Fusion protein of prote 100.0 1.4E-36 4.6E-41 273.6 31.0 261 53-345 4-289 (379)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-36 4E-41 276.2 29.4 273 62-371 36-330 (402)
81 3bg1_A Protein SEC13 homolog; 100.0 5.6E-37 1.9E-41 268.5 24.3 248 114-381 8-289 (316)
82 3vu4_A KMHSV2; beta-propeller 100.0 3.5E-35 1.2E-39 261.2 36.0 276 54-381 13-332 (355)
83 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-35 7.5E-40 292.1 37.7 249 53-343 48-302 (814)
84 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-36 6.4E-41 280.4 26.8 261 115-385 129-428 (524)
85 3k26_A Polycomb protein EED; W 100.0 1.9E-36 6.5E-41 271.3 25.0 273 114-401 13-365 (366)
86 2xyi_A Probable histone-bindin 100.0 2.3E-35 7.9E-40 269.7 32.3 248 112-376 121-401 (430)
87 3dm0_A Maltose-binding peripla 100.0 2.6E-35 8.9E-40 285.7 34.4 242 115-383 378-630 (694)
88 3ei3_B DNA damage-binding prot 100.0 1.1E-35 3.7E-40 268.2 29.2 266 114-412 68-349 (383)
89 4gga_A P55CDC, cell division c 100.0 1.4E-34 4.6E-39 263.9 35.3 268 55-362 142-414 (420)
90 4aez_A CDC20, WD repeat-contai 100.0 2.9E-35 9.9E-40 266.8 30.6 252 58-351 132-388 (401)
91 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-37 2.8E-41 275.8 19.8 287 59-404 14-323 (588)
92 3jrp_A Fusion protein of prote 100.0 5E-35 1.7E-39 263.3 30.4 252 114-384 6-286 (379)
93 3gre_A Serine/threonine-protei 100.0 1.1E-36 3.9E-41 279.5 19.0 277 67-383 34-357 (437)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-34 8.2E-39 264.7 34.4 293 61-372 5-371 (450)
95 1sq9_A Antiviral protein SKI8; 100.0 4.2E-35 1.4E-39 265.6 27.4 280 39-345 41-397 (397)
96 3zwl_B Eukaryotic translation 100.0 9.1E-34 3.1E-38 254.1 35.7 283 111-424 24-325 (369)
97 4h5i_A Guanine nucleotide-exch 100.0 7.2E-35 2.5E-39 260.0 27.2 256 55-344 68-344 (365)
98 4e54_B DNA damage-binding prot 100.0 4.1E-35 1.4E-39 268.5 26.1 280 115-419 115-404 (435)
99 3jro_A Fusion protein of prote 100.0 7.3E-35 2.5E-39 284.0 26.3 259 54-344 3-286 (753)
100 4gq1_A NUP37; propeller, trans 100.0 1.5E-34 5.3E-39 260.8 25.9 294 63-377 18-382 (393)
101 1k8k_C P40, ARP2/3 complex 41 100.0 7.7E-34 2.6E-38 255.0 29.7 242 117-383 6-272 (372)
102 3i2n_A WD repeat-containing pr 100.0 2.6E-34 8.8E-39 256.5 26.4 262 57-346 62-356 (357)
103 4aow_A Guanine nucleotide-bind 100.0 5.9E-33 2E-37 246.0 33.9 254 52-345 78-339 (340)
104 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-34 7.1E-39 255.5 23.9 268 66-381 42-329 (343)
105 3dw8_B Serine/threonine-protei 100.0 4.1E-34 1.4E-38 263.3 25.6 257 117-384 26-372 (447)
106 2xyi_A Probable histone-bindin 100.0 1.6E-33 5.6E-38 257.4 29.0 266 54-344 122-411 (430)
107 1yfq_A Cell cycle arrest prote 100.0 1.6E-33 5.5E-38 249.9 27.9 250 117-412 9-292 (342)
108 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-32 6.1E-37 240.0 33.9 240 114-384 13-254 (313)
109 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-32 4E-37 252.4 33.5 229 117-383 131-363 (435)
110 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-33 6.6E-38 253.9 27.3 272 54-374 46-350 (588)
111 3jro_A Fusion protein of prote 100.0 1.4E-33 4.8E-38 275.0 28.0 251 115-384 5-284 (753)
112 3bws_A Protein LP49; two-domai 100.0 4.1E-32 1.4E-36 248.9 35.3 280 61-381 123-428 (433)
113 4a11_B DNA excision repair pro 100.0 2.9E-32 9.8E-37 247.8 34.0 293 57-385 96-405 (408)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-33 7.6E-38 254.6 26.6 261 52-346 73-345 (402)
115 4ggc_A P55CDC, cell division c 100.0 2.2E-31 7.7E-36 233.6 34.6 251 55-345 62-317 (318)
116 1l0q_A Surface layer protein; 100.0 5.4E-31 1.9E-35 238.1 36.9 265 73-384 3-274 (391)
117 2w18_A PALB2, fancn, partner a 100.0 5.8E-32 2E-36 229.5 28.3 262 63-381 42-353 (356)
118 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-32 3.6E-37 244.5 24.4 233 135-382 45-289 (343)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.5E-31 1.9E-35 242.3 30.5 244 120-383 5-337 (450)
120 3bws_A Protein LP49; two-domai 100.0 3.3E-30 1.1E-34 236.2 34.8 269 119-411 122-399 (433)
121 1l0q_A Surface layer protein; 100.0 1.9E-29 6.4E-34 228.0 38.6 304 55-405 27-345 (391)
122 3mmy_A MRNA export factor; mRN 100.0 2E-30 6.8E-35 232.2 31.2 243 114-384 34-303 (368)
123 3vu4_A KMHSV2; beta-propeller 100.0 9.3E-31 3.2E-35 232.7 28.5 235 116-383 16-269 (355)
124 4gq1_A NUP37; propeller, trans 100.0 2.9E-31 9.9E-36 239.4 23.0 265 56-342 85-388 (393)
125 1nir_A Nitrite reductase; hemo 100.0 2.9E-29 1E-33 234.2 32.2 310 67-411 144-523 (543)
126 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-29 9E-34 223.1 26.8 245 114-373 6-279 (351)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.2E-28 7.7E-33 221.7 26.2 313 61-427 63-410 (415)
128 2w18_A PALB2, fancn, partner a 100.0 5.8E-28 2E-32 205.1 23.0 187 137-341 144-355 (356)
129 1nir_A Nitrite reductase; hemo 100.0 1.2E-26 4E-31 216.7 33.1 287 63-385 181-514 (543)
130 2ecf_A Dipeptidyl peptidase IV 100.0 1.1E-26 3.9E-31 227.2 32.3 299 60-382 36-410 (741)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.4E-26 4.7E-31 210.0 27.3 264 55-367 112-410 (415)
132 3u4y_A Uncharacterized protein 100.0 5.4E-25 1.9E-29 194.0 32.4 279 67-404 4-306 (331)
133 2ojh_A Uncharacterized protein 99.9 1.2E-25 4E-30 194.8 25.5 258 77-375 17-292 (297)
134 1ri6_A Putative isomerase YBHE 99.9 7E-25 2.4E-29 194.2 30.9 265 74-373 7-295 (343)
135 3vgz_A Uncharacterized protein 99.9 2E-24 6.7E-29 192.2 32.2 275 60-375 40-334 (353)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-25 1E-29 216.5 25.3 288 62-382 18-390 (723)
137 1ri6_A Putative isomerase YBHE 99.9 3.4E-24 1.2E-28 189.8 29.7 275 58-367 35-335 (343)
138 1pby_B Quinohemoprotein amine 99.9 4.3E-24 1.5E-28 188.7 27.0 269 73-383 2-308 (337)
139 3hfq_A Uncharacterized protein 99.9 4.7E-23 1.6E-27 182.9 33.1 240 120-374 40-305 (347)
140 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-24 1.5E-28 207.8 27.5 291 63-375 28-376 (706)
141 3u4y_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 182.5 30.6 254 58-346 38-307 (331)
142 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-23 6.6E-28 203.2 31.6 282 61-383 82-433 (706)
143 1k32_A Tricorn protease; prote 99.9 4.3E-24 1.5E-28 215.9 27.2 302 53-384 92-460 (1045)
144 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-23 3.9E-28 206.0 28.4 280 62-382 110-456 (741)
145 1k32_A Tricorn protease; prote 99.9 1.1E-23 3.7E-28 213.0 27.9 286 54-384 197-501 (1045)
146 2ojh_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 181.6 24.4 239 55-334 36-293 (297)
147 3o4h_A Acylamino-acid-releasin 99.9 9.8E-24 3.4E-28 200.5 23.6 268 60-383 21-313 (582)
148 1xfd_A DIP, dipeptidyl aminope 99.9 7.9E-23 2.7E-27 199.5 30.3 291 54-373 51-428 (723)
149 3scy_A Hypothetical bacterial 99.9 1.9E-21 6.4E-26 173.5 35.8 285 71-401 12-336 (361)
150 3scy_A Hypothetical bacterial 99.9 6E-22 2.1E-26 176.7 31.4 279 59-363 48-360 (361)
151 3vgz_A Uncharacterized protein 99.9 3.1E-22 1.1E-26 177.9 28.9 248 120-384 41-302 (353)
152 3hfq_A Uncharacterized protein 99.9 6.1E-22 2.1E-26 175.7 27.6 262 58-347 37-323 (347)
153 1jmx_B Amine dehydrogenase; ox 99.9 7.6E-22 2.6E-26 175.1 26.6 278 65-381 4-321 (349)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 2.2E-21 7.7E-26 176.3 29.6 319 60-402 36-405 (434)
155 3pe7_A Oligogalacturonate lyas 99.9 4.1E-22 1.4E-26 179.6 22.8 278 55-374 25-370 (388)
156 1pby_B Quinohemoprotein amine 99.9 2.8E-21 9.5E-26 170.6 27.1 250 62-354 35-321 (337)
157 1z68_A Fibroblast activation p 99.9 1E-22 3.5E-27 198.5 18.5 281 65-381 20-387 (719)
158 3o4h_A Acylamino-acid-releasin 99.9 6.5E-22 2.2E-26 188.0 20.9 233 119-383 21-274 (582)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-21 3.9E-26 178.2 20.6 192 175-373 38-259 (434)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.5E-20 1.2E-24 165.3 28.7 251 121-403 41-342 (365)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.3E-19 4.5E-24 161.6 26.6 257 59-344 38-342 (365)
162 1z68_A Fibroblast activation p 99.9 1.8E-20 6.2E-25 182.6 22.4 287 62-383 61-441 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.9 9.2E-20 3.1E-24 177.7 25.5 281 62-373 18-381 (740)
164 3c5m_A Oligogalacturonate lyas 99.8 1.4E-19 4.7E-24 163.5 21.9 273 61-374 36-370 (396)
165 2oiz_A Aromatic amine dehydrog 99.8 1.3E-18 4.6E-23 154.3 26.4 281 71-409 14-343 (361)
166 3fvz_A Peptidyl-glycine alpha- 99.8 1.8E-17 6.3E-22 145.4 31.2 242 120-375 24-312 (329)
167 4a5s_A Dipeptidyl peptidase 4 99.8 3.4E-18 1.2E-22 166.7 27.7 242 121-382 18-350 (740)
168 3azo_A Aminopeptidase; POP fam 99.8 5.6E-18 1.9E-22 163.5 28.1 289 55-381 18-363 (662)
169 2dg1_A DRP35, lactonase; beta 99.8 1.1E-17 3.8E-22 147.3 27.4 273 61-375 6-300 (333)
170 1q7f_A NHL, brain tumor CG1071 99.8 5.5E-17 1.9E-21 139.5 30.2 238 120-381 30-276 (286)
171 2oiz_A Aromatic amine dehydrog 99.8 2.9E-17 1E-21 145.6 29.0 275 56-367 47-360 (361)
172 3fvz_A Peptidyl-glycine alpha- 99.8 4.1E-17 1.4E-21 143.1 28.0 256 61-343 24-322 (329)
173 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-16 5E-21 136.9 30.9 254 56-346 25-283 (286)
174 1jmx_B Amine dehydrogenase; ox 99.8 8.9E-18 3E-22 148.8 23.5 255 62-353 44-335 (349)
175 2z2n_A Virginiamycin B lyase; 99.8 5.7E-15 1.9E-19 127.7 37.0 272 57-374 11-285 (299)
176 1qks_A Cytochrome CD1 nitrite 99.8 2.8E-15 9.5E-20 139.7 36.1 283 70-386 165-478 (567)
177 2gop_A Trilobed protease; beta 99.8 5.2E-16 1.8E-20 137.4 27.2 246 62-374 16-319 (347)
178 3azo_A Aminopeptidase; POP fam 99.8 7.7E-17 2.6E-21 155.6 23.0 258 54-348 61-374 (662)
179 2xdw_A Prolyl endopeptidase; a 99.8 9.2E-16 3.1E-20 148.9 30.6 243 121-383 126-412 (710)
180 3no2_A Uncharacterized protein 99.8 1.7E-15 5.7E-20 128.7 28.2 252 137-412 4-271 (276)
181 3pe7_A Oligogalacturonate lyas 99.8 8.1E-17 2.8E-21 144.9 21.0 221 134-372 43-307 (388)
182 3e5z_A Putative gluconolactona 99.8 1.2E-15 4E-20 131.9 27.4 229 119-375 27-277 (296)
183 1rwi_B Serine/threonine-protei 99.7 1E-15 3.4E-20 130.4 25.4 235 121-381 25-260 (270)
184 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-14 4.8E-19 134.9 33.3 301 62-410 198-546 (567)
185 1rwi_B Serine/threonine-protei 99.7 7.7E-15 2.6E-19 124.9 27.7 241 62-346 25-267 (270)
186 3dsm_A Uncharacterized protein 99.7 5.2E-15 1.8E-19 129.5 27.1 256 80-372 15-285 (328)
187 3e5z_A Putative gluconolactona 99.7 6.7E-15 2.3E-19 127.1 26.7 244 55-346 22-289 (296)
188 2dg1_A DRP35, lactonase; beta 99.7 8.6E-14 2.9E-18 122.3 32.8 241 53-333 37-300 (333)
189 2xdw_A Prolyl endopeptidase; a 99.7 4.6E-15 1.6E-19 144.1 26.7 248 57-345 121-416 (710)
190 2qc5_A Streptogramin B lactona 99.7 3.4E-13 1.2E-17 116.5 35.9 270 59-373 18-290 (300)
191 2bkl_A Prolyl endopeptidase; m 99.7 1.2E-15 4E-20 147.8 22.3 247 58-346 118-400 (695)
192 2mad_H Methylamine dehydrogena 99.7 1.4E-13 4.8E-18 122.1 33.3 284 68-408 28-356 (373)
193 2bkl_A Prolyl endopeptidase; m 99.7 1.2E-15 4E-20 147.7 21.1 242 120-383 121-395 (695)
194 3c5m_A Oligogalacturonate lyas 99.7 4.9E-16 1.7E-20 140.2 16.0 217 135-373 44-301 (396)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 7.9E-14 2.7E-18 121.4 29.3 238 121-373 19-286 (314)
196 3dsm_A Uncharacterized protein 99.7 2.8E-14 9.6E-19 124.8 25.5 258 61-362 44-319 (328)
197 3no2_A Uncharacterized protein 99.7 3E-13 1E-17 114.8 28.8 246 71-353 4-262 (276)
198 2gop_A Trilobed protease; beta 99.7 3.9E-14 1.3E-18 125.2 23.8 233 61-355 59-341 (347)
199 3sjl_D Methylamine dehydrogena 99.6 9.1E-14 3.1E-18 121.5 23.5 288 67-411 39-372 (386)
200 2z2n_A Virginiamycin B lyase; 99.6 3E-12 1E-16 110.5 33.1 236 120-383 15-253 (299)
201 3g4e_A Regucalcin; six bladed 99.6 9.3E-13 3.2E-17 113.5 29.6 232 121-374 14-261 (297)
202 3sjl_D Methylamine dehydrogena 99.6 5.5E-13 1.9E-17 116.6 26.6 266 65-365 82-384 (386)
203 1yr2_A Prolyl oligopeptidase; 99.6 1.8E-13 6.1E-18 133.5 26.2 239 121-383 164-439 (741)
204 3c75_H MADH, methylamine dehyd 99.6 1.1E-13 3.8E-18 123.3 22.3 284 70-409 82-409 (426)
205 1yr2_A Prolyl oligopeptidase; 99.6 2.4E-13 8.1E-18 132.6 24.0 248 58-346 160-444 (741)
206 2mad_H Methylamine dehydrogena 99.6 9.2E-12 3.1E-16 110.4 31.9 250 65-350 70-357 (373)
207 3hrp_A Uncharacterized protein 99.6 3.6E-12 1.2E-16 114.7 28.9 246 61-341 131-408 (409)
208 3hrp_A Uncharacterized protein 99.6 2.8E-12 9.6E-17 115.4 27.9 233 133-380 137-405 (409)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.4E-12 2.9E-16 108.5 29.7 245 61-343 18-299 (314)
210 3iuj_A Prolyl endopeptidase; h 99.6 8.8E-13 3E-17 127.4 25.0 248 57-346 125-408 (693)
211 3dr2_A Exported gluconolactona 99.6 4.2E-12 1.4E-16 109.9 26.3 232 120-380 45-302 (305)
212 1xip_A Nucleoporin NUP159; bet 99.6 2.4E-13 8.1E-18 119.4 18.0 181 175-373 39-232 (388)
213 2ghs_A AGR_C_1268P; regucalcin 99.5 1.9E-11 6.6E-16 106.7 29.1 229 122-374 51-291 (326)
214 2qc5_A Streptogramin B lactona 99.5 7.3E-11 2.5E-15 101.7 31.9 236 120-383 20-258 (300)
215 3g4e_A Regucalcin; six bladed 99.5 7.2E-11 2.5E-15 101.7 31.4 232 59-332 11-261 (297)
216 1mda_H Methylamine dehydrogena 99.5 2.4E-12 8.4E-17 112.8 20.3 268 83-414 47-358 (368)
217 3c75_H MADH, methylamine dehyd 99.5 4E-11 1.4E-15 106.8 27.7 250 65-350 122-409 (426)
218 1xip_A Nucleoporin NUP159; bet 99.5 6.3E-13 2.1E-17 116.8 15.9 181 121-330 39-231 (388)
219 2ghs_A AGR_C_1268P; regucalcin 99.5 2.2E-10 7.5E-15 100.0 28.9 225 62-332 50-291 (326)
220 2qe8_A Uncharacterized protein 99.4 5.2E-11 1.8E-15 104.8 23.9 268 121-402 18-335 (343)
221 3iuj_A Prolyl endopeptidase; h 99.4 2.1E-11 7.3E-16 117.7 21.8 239 120-383 129-403 (693)
222 3dr2_A Exported gluconolactona 99.4 3E-10 1E-14 98.2 24.1 236 56-340 40-303 (305)
223 1mda_H Methylamine dehydrogena 99.4 1.1E-10 3.9E-15 102.2 20.3 259 65-364 69-366 (368)
224 1yiq_A Quinohemoprotein alcoho 99.3 8.1E-10 2.8E-14 106.0 25.6 294 72-383 70-503 (689)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.2E-09 1.1E-13 94.7 27.7 272 71-383 52-335 (376)
226 1npe_A Nidogen, entactin; glyc 99.3 1.1E-08 3.8E-13 86.4 29.5 221 121-367 37-263 (267)
227 2ece_A 462AA long hypothetical 99.3 3.9E-09 1.3E-13 93.0 27.0 231 136-373 93-399 (462)
228 2qe8_A Uncharacterized protein 99.3 7.1E-10 2.4E-14 97.5 22.7 255 61-339 17-317 (343)
229 2ece_A 462AA long hypothetical 99.3 5E-09 1.7E-13 92.4 27.5 238 70-331 93-399 (462)
230 1fwx_A Nitrous oxide reductase 99.3 9.4E-11 3.2E-15 106.9 16.5 244 70-374 99-407 (595)
231 1kb0_A Quinohemoprotein alcoho 99.3 9.2E-10 3.2E-14 105.4 24.2 295 72-384 77-506 (677)
232 1yiq_A Quinohemoprotein alcoho 99.3 4.7E-09 1.6E-13 100.8 28.8 278 72-374 121-538 (689)
233 1kb0_A Quinohemoprotein alcoho 99.3 2.1E-09 7E-14 103.0 25.2 273 72-371 128-536 (677)
234 2hz6_A Endoplasmic reticulum t 99.2 5.2E-12 1.8E-16 112.1 6.0 239 137-402 8-279 (369)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.2 8.5E-09 2.9E-13 92.0 24.1 265 71-380 102-373 (376)
236 3hxj_A Pyrrolo-quinoline quino 99.2 3.1E-09 1.1E-13 92.9 19.4 213 138-380 107-319 (330)
237 2iwa_A Glutamine cyclotransfer 99.1 8E-08 2.7E-12 79.5 24.2 200 62-298 22-238 (266)
238 1npe_A Nidogen, entactin; glyc 99.1 5.5E-07 1.9E-11 75.9 28.3 233 140-409 3-245 (267)
239 2iwa_A Glutamine cyclotransfer 99.1 1.1E-07 3.6E-12 78.8 22.9 185 176-373 23-224 (266)
240 2fp8_A Strictosidine synthase; 99.1 1.5E-07 5.2E-12 81.8 25.3 228 135-376 27-304 (322)
241 3v64_C Agrin; beta propeller, 99.1 1.6E-06 5.5E-11 76.0 31.8 259 60-362 33-294 (349)
242 2p4o_A Hypothetical protein; p 99.0 7.4E-07 2.5E-11 76.8 28.8 226 120-374 32-277 (306)
243 3v65_B Low-density lipoprotein 99.0 1.1E-06 3.8E-11 78.2 30.5 257 62-362 78-337 (386)
244 4a2l_A BT_4663, two-component 99.0 5.1E-06 1.8E-10 81.7 37.6 287 60-373 214-516 (795)
245 2hz6_A Endoplasmic reticulum t 99.0 6E-10 2E-14 98.9 8.8 256 71-382 8-276 (369)
246 4a2l_A BT_4663, two-component 99.0 3.1E-06 1.1E-10 83.2 34.9 279 63-373 175-470 (795)
247 1fwx_A Nitrous oxide reductase 99.0 4.5E-07 1.5E-11 83.0 26.1 228 140-382 17-358 (595)
248 3nol_A Glutamine cyclotransfer 99.0 1.2E-07 4E-12 77.6 19.7 193 51-284 32-243 (262)
249 1kv9_A Type II quinohemoprotei 99.0 8.4E-08 2.9E-12 91.9 22.1 293 72-384 66-487 (668)
250 3hxj_A Pyrrolo-quinoline quino 98.9 4.2E-08 1.4E-12 85.7 17.3 209 140-381 32-240 (330)
251 1kv9_A Type II quinohemoprotei 98.9 1.1E-06 3.6E-11 84.3 27.5 305 72-402 117-552 (668)
252 1ijq_A LDL receptor, low-densi 98.9 9.8E-06 3.3E-10 70.0 31.3 209 120-351 30-246 (316)
253 2ad6_A Methanol dehydrogenase 98.9 1.1E-06 3.8E-11 82.3 27.0 273 72-371 115-523 (571)
254 3nol_A Glutamine cyclotransfer 98.9 4.5E-07 1.5E-11 74.1 20.3 183 176-373 45-243 (262)
255 2p4o_A Hypothetical protein; p 98.9 1.1E-05 3.8E-10 69.4 30.3 237 61-334 32-279 (306)
256 1k3i_A Galactose oxidase precu 98.9 8.8E-07 3E-11 85.0 25.0 275 65-374 190-530 (656)
257 2fp8_A Strictosidine synthase; 98.9 1.2E-06 4.1E-11 76.1 23.4 258 62-343 20-313 (322)
258 3p5b_L Low density lipoprotein 98.9 2.1E-05 7.3E-10 70.2 31.9 248 74-362 85-339 (400)
259 3v65_B Low-density lipoprotein 98.8 6.7E-06 2.3E-10 73.2 27.8 218 146-382 94-315 (386)
260 3v64_C Agrin; beta propeller, 98.8 1.8E-05 6.1E-10 69.3 30.0 216 147-381 52-271 (349)
261 3nok_A Glutaminyl cyclase; bet 98.8 5.7E-07 2E-11 73.5 18.6 182 176-373 57-253 (268)
262 2ad6_A Methanol dehydrogenase 98.8 6.5E-06 2.2E-10 77.2 28.1 240 138-383 115-492 (571)
263 3tc9_A Hypothetical hydrolase; 98.8 1.4E-06 4.7E-11 78.7 22.3 236 129-379 139-424 (430)
264 1w6s_A Methanol dehydrogenase 98.8 1.2E-05 4E-10 75.5 28.7 273 75-374 124-536 (599)
265 3nok_A Glutaminyl cyclase; bet 98.8 2.5E-06 8.5E-11 69.7 20.6 184 61-284 55-253 (268)
266 3mbr_X Glutamine cyclotransfer 98.8 4.7E-06 1.6E-10 67.5 21.8 185 61-284 21-222 (243)
267 4hw6_A Hypothetical protein, I 98.8 2.2E-06 7.6E-11 77.3 22.0 235 129-379 141-427 (433)
268 3qqz_A Putative uncharacterize 98.7 2.1E-05 7.2E-10 64.7 25.8 214 54-294 20-250 (255)
269 2xzh_A Clathrin heavy chain 1; 98.7 6.5E-05 2.2E-09 62.9 31.1 215 135-361 75-308 (365)
270 3v9f_A Two-component system se 98.7 7.8E-05 2.7E-09 73.1 34.3 286 59-379 311-606 (781)
271 3v9f_A Two-component system se 98.7 0.00011 3.8E-09 72.1 35.0 289 61-379 211-519 (781)
272 2xe4_A Oligopeptidase B; hydro 98.7 5E-06 1.7E-10 80.9 25.2 197 62-295 175-398 (751)
273 1flg_A Protein (quinoprotein e 98.7 3.2E-05 1.1E-09 72.6 29.7 175 194-374 291-549 (582)
274 3sov_A LRP-6, low-density lipo 98.7 5.5E-05 1.9E-09 65.1 29.0 218 120-361 35-256 (318)
275 3qqz_A Putative uncharacterize 98.7 5.8E-05 2E-09 62.1 27.6 207 120-341 27-251 (255)
276 3mbr_X Glutamine cyclotransfer 98.7 1.1E-05 3.6E-10 65.5 21.8 184 175-373 22-222 (243)
277 1w6s_A Methanol dehydrogenase 98.7 2.4E-05 8.3E-10 73.4 26.9 203 138-351 62-350 (599)
278 1ijq_A LDL receptor, low-densi 98.7 0.00014 4.9E-09 62.6 31.5 223 141-382 4-235 (316)
279 1flg_A Protein (quinoprotein e 98.7 3.9E-05 1.3E-09 72.0 28.0 208 140-351 70-363 (582)
280 3m0c_C LDL receptor, low-densi 98.6 0.00012 4.1E-09 70.9 31.4 210 120-351 424-640 (791)
281 1bpo_A Protein (clathrin); cla 98.6 0.0002 7E-09 62.5 31.7 217 135-363 74-309 (494)
282 3p5b_L Low density lipoprotein 98.6 0.00025 8.6E-09 63.3 32.1 227 140-382 85-317 (400)
283 3kya_A Putative phosphatase; s 98.6 3.6E-05 1.2E-09 69.7 25.3 206 131-345 143-411 (496)
284 3amr_A 3-phytase; beta-propell 98.6 5.2E-05 1.8E-09 64.8 24.6 206 135-351 37-272 (355)
285 3sov_A LRP-6, low-density lipo 98.6 0.00018 6.1E-09 62.0 27.2 221 147-383 12-236 (318)
286 1n7d_A LDL receptor, low-densi 98.5 8.7E-07 3E-11 85.1 13.3 220 121-363 407-634 (699)
287 3m0c_C LDL receptor, low-densi 98.5 0.00039 1.3E-08 67.4 31.3 220 146-380 402-627 (791)
288 3tc9_A Hypothetical hydrolase; 98.5 0.00014 4.8E-09 65.6 26.7 239 62-342 138-429 (430)
289 2xbg_A YCF48-like protein; pho 98.5 0.00049 1.7E-08 59.6 32.7 278 60-381 35-318 (327)
290 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0015 5E-08 61.9 32.1 203 120-348 37-242 (628)
291 4hw6_A Hypothetical protein, I 98.3 0.00055 1.9E-08 61.7 25.5 241 62-342 140-432 (433)
292 1n7d_A LDL receptor, low-densi 98.3 2.2E-05 7.5E-10 75.5 17.1 220 147-381 385-610 (699)
293 2xe4_A Oligopeptidase B; hydro 98.3 2.3E-05 7.7E-10 76.3 16.5 147 224-374 175-339 (751)
294 1k3i_A Galactose oxidase precu 98.2 8.4E-05 2.9E-09 71.2 19.6 244 60-332 242-530 (656)
295 3s94_A LRP-6, low-density lipo 98.2 0.0018 6.2E-08 61.2 26.4 204 120-348 40-248 (619)
296 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0061 2.1E-07 57.7 30.3 218 146-382 13-234 (628)
297 2p9w_A MAL S 1 allergenic prot 98.1 0.0018 6.2E-08 54.9 22.8 198 177-381 16-261 (334)
298 3sre_A PON1, serum paraoxonase 98.1 0.00068 2.3E-08 58.8 20.6 187 146-342 81-297 (355)
299 3kya_A Putative phosphatase; s 98.1 0.005 1.7E-07 55.8 26.8 261 63-348 141-480 (496)
300 2p9w_A MAL S 1 allergenic prot 98.0 0.0003 1E-08 59.6 16.2 159 225-384 15-214 (334)
301 1xi4_A Clathrin heavy chain; a 98.0 0.0021 7E-08 64.9 22.6 212 135-358 74-304 (1630)
302 2ism_A Putative oxidoreductase 97.9 0.0081 2.8E-07 52.5 25.1 234 121-373 32-333 (352)
303 3s94_A LRP-6, low-density lipo 97.9 0.014 4.9E-07 55.1 35.7 185 187-381 319-506 (619)
304 3a9g_A Putative uncharacterize 97.9 0.0098 3.4E-07 51.9 25.2 238 121-373 30-330 (354)
305 2g8s_A Glucose/sorbosone dehyd 97.9 0.008 2.7E-07 52.5 23.5 239 121-372 19-340 (353)
306 3amr_A 3-phytase; beta-propell 97.9 0.0034 1.2E-07 53.7 20.1 186 186-384 41-262 (355)
307 2xbg_A YCF48-like protein; pho 97.9 0.01 3.5E-07 51.3 33.1 231 120-378 36-272 (327)
308 3sre_A PON1, serum paraoxonase 97.8 0.0092 3.1E-07 51.7 22.2 198 178-384 54-297 (355)
309 3ei3_A DNA damage-binding prot 97.8 0.043 1.5E-06 55.7 31.3 190 60-284 553-755 (1158)
310 3a9g_A Putative uncharacterize 97.8 0.016 5.5E-07 50.6 27.2 247 61-331 29-330 (354)
311 3das_A Putative oxidoreductase 97.7 0.022 7.7E-07 49.1 26.4 241 120-374 32-327 (347)
312 2ism_A Putative oxidoreductase 97.6 0.03 1E-06 48.8 22.1 105 175-284 32-153 (352)
313 2vpj_A Kelch-like protein 12; 97.6 0.014 4.7E-07 49.7 19.6 191 137-346 14-234 (301)
314 3pbp_A Nucleoporin NUP82; beta 97.4 0.021 7E-07 50.1 18.2 153 137-293 31-208 (452)
315 3ei3_A DNA damage-binding prot 97.4 0.15 5.1E-06 51.9 26.9 181 148-343 807-999 (1158)
316 2vpj_A Kelch-like protein 12; 97.4 0.019 6.7E-07 48.7 18.1 189 137-346 62-281 (301)
317 1zgk_A Kelch-like ECH-associat 97.3 0.048 1.6E-06 46.5 20.1 189 137-346 24-243 (308)
318 3pbp_A Nucleoporin NUP82; beta 97.3 0.027 9.3E-07 49.4 17.8 133 244-379 40-206 (452)
319 1cru_A Protein (soluble quinop 97.2 0.11 3.7E-06 47.0 28.8 113 120-240 27-160 (454)
320 2xn4_A Kelch-like protein 2; s 97.2 0.036 1.2E-06 47.1 18.3 189 138-346 16-232 (302)
321 2xn4_A Kelch-like protein 2; s 97.2 0.04 1.4E-06 46.8 18.3 189 137-346 61-279 (302)
322 3ii7_A Kelch-like protein 7; p 97.2 0.051 1.8E-06 46.2 19.0 216 138-375 12-257 (306)
323 3ii7_A Kelch-like protein 7; p 97.2 0.059 2E-06 45.9 19.2 189 137-346 55-275 (306)
324 1cru_A Protein (soluble quinop 97.0 0.082 2.8E-06 47.8 19.2 107 224-331 28-162 (454)
325 2xzh_A Clathrin heavy chain 1; 97.0 0.13 4.4E-06 43.5 27.1 240 66-348 72-337 (365)
326 2g8s_A Glucose/sorbosone dehyd 96.9 0.18 6.2E-06 43.9 26.9 69 266-336 271-347 (353)
327 2be1_A Serine/threonine-protei 96.9 0.012 4E-07 50.6 11.5 117 236-352 11-139 (339)
328 3das_A Putative oxidoreductase 96.8 0.21 7.2E-06 43.0 26.2 249 60-330 31-325 (347)
329 4asc_A Kelch repeat and BTB do 96.8 0.22 7.4E-06 42.5 19.6 185 140-346 7-224 (315)
330 1zgk_A Kelch-like ECH-associat 96.7 0.22 7.7E-06 42.2 19.2 189 137-346 70-290 (308)
331 1tl2_A L10, protein (tachylect 96.7 0.1 3.5E-06 41.3 14.3 107 62-198 42-158 (236)
332 2uvk_A YJHT; unknown function, 96.6 0.087 3E-06 46.0 15.7 21 137-157 19-40 (357)
333 4asc_A Kelch repeat and BTB do 96.6 0.28 9.6E-06 41.8 19.6 190 137-347 45-281 (315)
334 2be1_A Serine/threonine-protei 96.6 0.017 5.6E-07 49.7 10.3 199 138-348 10-236 (339)
335 1bpo_A Protein (clathrin); cla 96.3 0.56 1.9E-05 41.4 28.7 241 65-348 70-336 (494)
336 1xi4_A Clathrin heavy chain; a 96.0 0.77 2.6E-05 47.1 19.7 236 68-346 73-334 (1630)
337 2woz_A Kelch repeat and BTB do 95.6 0.9 3.1E-05 38.6 19.1 187 140-347 18-235 (318)
338 3s25_A Hypothetical 7-bladed b 95.6 0.92 3.1E-05 38.3 19.8 127 229-373 110-241 (302)
339 2zwa_A Leucine carboxyl methyl 95.5 1.5 5.1E-05 42.1 19.3 201 137-347 397-639 (695)
340 3sbq_A Nitrous-oxide reductase 95.5 0.11 3.8E-06 47.2 10.5 108 266-374 323-454 (638)
341 3s25_A Hypothetical 7-bladed b 95.4 1 3.5E-05 38.1 23.9 200 135-373 61-280 (302)
342 3ott_A Two-component system se 95.4 2.1 7.1E-05 41.7 34.3 272 61-372 146-436 (758)
343 2woz_A Kelch repeat and BTB do 95.4 1.1 3.8E-05 38.1 20.0 191 137-347 56-291 (318)
344 1tl2_A L10, protein (tachylect 94.9 1.1 3.8E-05 35.5 17.9 149 121-283 42-199 (236)
345 2uvk_A YJHT; unknown function, 94.9 1.7 5.9E-05 37.6 18.3 142 148-301 168-346 (357)
346 3ott_A Two-component system se 92.7 7.7 0.00026 37.6 36.0 290 61-381 232-541 (758)
347 2wg3_C Hedgehog-interacting pr 92.6 3.9 0.00013 36.9 14.6 109 175-284 15-157 (463)
348 3uc1_A DNA gyrase subunit A; D 91.8 5.5 0.00019 33.9 22.8 199 139-343 4-228 (327)
349 3q6k_A 43.2 kDa salivary prote 91.0 7.4 0.00025 33.9 23.2 179 223-407 152-373 (381)
350 2zwa_A Leucine carboxyl methyl 90.6 8.9 0.00031 36.8 15.6 117 137-258 500-639 (695)
351 3sbq_A Nitrous-oxide reductase 90.2 0.38 1.3E-05 43.9 5.4 119 61-191 323-452 (638)
352 3uc1_A DNA gyrase subunit A; D 89.1 9.7 0.00033 32.4 23.4 220 60-296 41-278 (327)
353 2wg3_C Hedgehog-interacting pr 88.4 14 0.00047 33.3 25.2 60 313-373 276-354 (463)
354 4hvt_A Ritya.17583.B, post-pro 88.1 19 0.00066 34.5 17.1 227 135-372 138-414 (711)
355 1suu_A DNA gyrase subunit A; t 87.8 12 0.0004 31.7 26.9 202 136-343 6-231 (312)
356 1zi0_A DNA gyrase subunit A; b 87.4 12 0.00042 31.5 25.3 200 137-342 2-225 (307)
357 4gq2_M Nucleoporin NUP120; bet 85.4 3.5 0.00012 41.2 9.5 37 61-97 236-272 (950)
358 3qhy_B Beta-lactamase inhibito 84.9 15 0.00053 30.4 27.2 241 62-366 25-265 (282)
359 3qhy_B Beta-lactamase inhibito 84.9 16 0.00053 30.3 26.4 204 147-383 41-244 (282)
360 3b7f_A Glycosyl hydrolase, BNR 82.0 25 0.00087 30.6 28.8 115 175-294 116-259 (394)
361 4gq2_M Nucleoporin NUP120; bet 78.7 56 0.0019 32.7 16.8 38 313-350 236-273 (950)
362 3q6k_A 43.2 kDa salivary prote 77.4 36 0.0012 29.6 22.3 178 149-330 124-341 (381)
363 1zi0_A DNA gyrase subunit A; b 76.1 34 0.0012 28.7 24.2 217 61-296 42-276 (307)
364 1wp5_A Topoisomerase IV; broke 75.2 37 0.0013 28.8 24.8 197 136-343 3-225 (323)
365 3b7f_A Glycosyl hydrolase, BNR 75.1 42 0.0014 29.2 26.9 217 139-365 23-288 (394)
366 2cn3_A Xyloglucanase, beta-1,4 73.3 68 0.0023 30.9 24.7 117 121-244 24-153 (737)
367 3zwu_A Alkaline phosphatase PH 72.7 11 0.00037 35.1 7.7 58 315-372 478-548 (592)
368 3l6v_A GYRA, DNA gyrase subuni 72.7 47 0.0016 28.8 26.0 154 135-296 4-179 (370)
369 1wp5_A Topoisomerase IV; broke 69.6 51 0.0017 27.9 24.7 177 61-254 39-225 (323)
370 3l6v_A GYRA, DNA gyrase subuni 66.2 65 0.0022 27.9 26.5 130 60-203 45-180 (370)
371 1sqj_A OXG-RCBH, oligoxylogluc 65.9 1E+02 0.0035 30.0 16.8 149 222-374 14-189 (789)
372 4a9v_A PHOX; hydrolase, beta-p 65.5 28 0.00094 32.2 8.5 61 313-373 476-549 (592)
373 3f7f_A Nucleoporin NUP120; nuc 64.1 56 0.0019 31.2 10.5 120 268-398 224-352 (729)
374 4fhn_B Nucleoporin NUP120; pro 63.8 17 0.00056 37.3 7.7 38 313-350 238-275 (1139)
375 1suu_A DNA gyrase subunit A; t 62.6 69 0.0024 26.9 24.9 179 61-254 47-231 (312)
376 4fhn_B Nucleoporin NUP120; pro 61.2 8.6 0.00029 39.4 5.1 36 62-97 239-274 (1139)
377 1sqj_A OXG-RCBH, oligoxylogluc 60.3 1.3E+02 0.0044 29.3 23.4 66 176-244 123-190 (789)
378 3zwu_A Alkaline phosphatase PH 58.5 38 0.0013 31.6 8.4 60 224-284 477-549 (592)
379 4a9v_A PHOX; hydrolase, beta-p 56.5 63 0.0022 29.9 9.2 61 223-284 476-549 (592)
380 3no0_A DNA gyrase subunit A; D 53.1 94 0.0032 25.5 20.6 210 60-296 23-245 (276)
381 3kci_A Probable E3 ubiquitin-p 53.0 1.1E+02 0.0039 26.4 28.8 196 140-342 64-292 (389)
382 1zvt_A Topoisomerase IV subuni 42.6 1.3E+02 0.0046 24.3 13.3 146 237-386 4-164 (256)
383 3mvd_K Regulator of chromosome 36.6 2.2E+02 0.0074 24.9 32.8 256 63-343 77-374 (423)
384 3kci_A Probable E3 ubiquitin-p 27.4 3E+02 0.01 23.7 29.1 199 137-343 115-345 (389)
385 1q47_A Semaphorin 3A; beta pro 25.1 2.1E+02 0.007 26.0 7.3 68 224-292 405-487 (495)
386 3mez_B Mannose-specific lectin 25.1 1.6E+02 0.0056 19.9 10.5 25 178-203 60-84 (113)
387 4h3o_A Lectin; cadmium, plant 24.4 1.6E+02 0.0056 19.6 10.1 24 178-202 54-77 (105)
388 1q47_A Semaphorin 3A; beta pro 22.7 2.3E+02 0.0078 25.7 7.1 66 315-380 406-487 (495)
389 3mez_A Mannose-specific lectin 22.5 1.9E+02 0.0063 19.6 7.4 71 316-399 22-101 (111)
390 3a0f_A Xyloglucanase; beta-pro 22.1 5.4E+02 0.018 24.8 22.1 163 117-288 18-203 (763)
391 3al9_A Plexin-A2; beta-propell 22.0 1.4E+02 0.0048 27.4 5.7 68 314-381 401-477 (539)
392 1olz_A Semaphorin 4D; developm 21.5 4E+02 0.014 25.3 8.8 69 268-338 399-477 (663)
393 3al9_A Plexin-A2; beta-propell 21.0 3E+02 0.01 25.3 7.6 71 267-338 401-476 (539)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9e-50 Score=353.63 Aligned_cols=291 Identities=15% Similarity=0.174 Sum_probs=248.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.++.... ....|...|.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-----------------~~~~~~~~v~~~~~--- 105 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-----------------AIPLRSSWVMTCAY--- 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------------EEECSSSCEEEEEE---
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-----------------EeecCCccEEEEEE---
Confidence 4566889999999999999999999999999999999998654321 22345678999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+|++++|++|+.|+.|++|++.++. ....+..|. ..|.++.|++++.+++++.|+.|++||+.+..
T Consensus 106 ----s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~- 175 (340)
T 1got_B 106 ----APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ- 175 (340)
T ss_dssp ----CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEEETTEEEEEETTSCEEEEETTTTE-
T ss_pred ----CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEECCCCcEEEEECCCcEEEEECCCCc-
Confidence 7789999999999999999998753 333444444 38999999999886667899999999997632
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
....+.+|...|.+++|+| ++.++++|+.|++|++||+++++....+.+|...|++++|+|++++|++++ .
T Consensus 176 -------~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~ 246 (340)
T 1got_B 176 -------QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-D 246 (340)
T ss_dssp -------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred -------EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-C
Confidence 2223467889999999999 677999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
||.|++||++...... . .....+...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus 247 d~~v~iwd~~~~~~~~-~-~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 247 DATCRLFDLRADQELM-T-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp TSCEEEEETTTTEEEE-E-ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CCcEEEEECCCCcEEE-E-EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence 9999999999875432 2 2223445679999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
.+|++++.|+.|+||+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999777666664
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.8e-50 Score=362.84 Aligned_cols=288 Identities=19% Similarity=0.272 Sum_probs=252.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... ....|...|.+++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-----------------~l~~h~~~V~~v~~----- 158 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-----------------TLKGHTDSVQDISF----- 158 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-----------------EECCCSSCEEEEEE-----
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEeccCCcEEEEEE-----
Confidence 34678999999999999999999999999999999998765432 23346689999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|++.+|++|+.||+|++||+.+++.+..+..|.. .|.+++|+|++.+|+ ++.|+.|++||++.+.
T Consensus 159 --~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~------ 225 (410)
T 1vyh_C 159 --DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY------ 225 (410)
T ss_dssp --CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTCC------
T ss_pred --cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------
Confidence 67899999999999999999999988888877665 899999999999988 4599999999998742
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC---------------
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--------------- 276 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------- 276 (430)
....+.+|...|.++.++| ++.++++|+.|++|++||+++++....+..|...|.+++|+|+
T Consensus 226 --~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 226 --CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp --EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred --EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 1122357888999999999 6779999999999999999999999999999999999999996
Q ss_pred -----CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 277 -----GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 277 -----~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+.+|++++ .|+.|++||++++.... .+ .+|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.
T Consensus 303 ~~~~~g~~l~sgs-~D~~i~iwd~~~~~~~~-~~---~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 303 KSGKPGPFLLSGS-RDKTIKMWDVSTGMCLM-TL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp -----CCEEEEEE-TTSEEEEEETTTTEEEE-EE---ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred ccCCCCCEEEEEe-CCCeEEEEECCCCceEE-EE---ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 66899999 99999999999875432 22 5788999999999999999999999999999999999999999
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+|...|++++|+|++++|++++.|+.|++|+.
T Consensus 378 ~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999997766666653
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.3e-49 Score=343.64 Aligned_cols=290 Identities=21% Similarity=0.296 Sum_probs=247.6
Q ss_pred ceeecccCCCceeEEEECcC----CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeee
Q 014125 52 QFRTSSIPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 127 (430)
.++.+.+|.+.|++++|+|+ +.+|+||+.|++|+||++..+.. ........|...|.+++|
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------~~~~~l~gh~~~v~~~~~ 88 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------DLQWSLEGHQLGVVSVDI 88 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------EEEEEECCCSSCEEEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------eeeeeeccCCCCEEEEEE
Confidence 34567899999999999985 66999999999999999865421 011123467789999999
Q ss_pred ccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCC
Q 014125 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR 206 (430)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~ 206 (430)
++++.++++++.|++|++||+.+++.+..+..+.. .+.+++|+|++++|+++ .++.|++|+++....
T Consensus 89 -------~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 89 -------SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-----DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp -------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-----CCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred -------CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 67889999999999999999999998888876554 78899999999999966 899999999987432
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
. .....+...+.+++|+| ++.+|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++ .
T Consensus 157 ~--------~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~ 226 (321)
T 3ow8_A 157 E--------YSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-D 226 (321)
T ss_dssp E--------EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-T
T ss_pred e--------EEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-C
Confidence 1 12245667899999999 677999999999999999999999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 287 DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 287 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
|+.|++||+++..... . ..+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|.+.|.+++|+|++
T Consensus 227 dg~i~iwd~~~~~~~~-~---~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAG-T---LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 302 (321)
T ss_dssp TSCEEEEETTTCCEEE-E---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CCeEEEEECCCcceeE-E---EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 9999999999875432 2 25789999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCCceeeecC
Q 014125 367 PMAASSSGHRRFPVDD 382 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~ 382 (430)
.+|++++.|+.|++||
T Consensus 303 ~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 303 SKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SEEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCeEEEEe
Confidence 9999998765555554
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-48 Score=345.48 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=246.1
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..+.+.+|.+.|++++|+|++++||||+.||+|+|||..++.... ....+...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-----------------~~~~~~~~v~~~~~--- 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-----------------AVTMPCTWVMACAY--- 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------EEECSSSCCCEEEE---
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-----------------EEecCCCCEEEEEE---
Confidence 4567889999999999999999999999999999999987653221 22234567899999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCc------eeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR 203 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~ 203 (430)
+|++..|++++.|+.+++|++.... ....+..|. ..|.+++|+|++..|+ ++.|++|++||++.
T Consensus 115 ----sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 115 ----APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----NYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp ----CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----SCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ----CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-----CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 7789999999999999999986542 233333333 4899999999998888 55999999999987
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
+. ....+.+|...|.+++|+|. .+++|++|+.||+|++||+++++.+..+..|...|++++|+|++.+|++
T Consensus 186 ~~--------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 257 (354)
T 2pbi_B 186 GQ--------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257 (354)
T ss_dssp CC--------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred Ce--------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE
Confidence 42 22233678889999999885 3579999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
++ .|+.|++||++...... ......+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|
T Consensus 258 ~s-~D~~v~lwd~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~ 334 (354)
T 2pbi_B 258 GS-DDATCRLYDLRADREVA--IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334 (354)
T ss_dssp EE-TTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE
T ss_pred Ee-CCCeEEEEECCCCcEEE--EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 99 99999999999875432 2222344557899999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCceeeecC
Q 014125 363 HPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~ 382 (430)
+|++++|++++.|+.++||+
T Consensus 335 spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 335 SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEcCCCCEEecC
Confidence 99999999999877777763
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.3e-47 Score=361.23 Aligned_cols=355 Identities=14% Similarity=0.197 Sum_probs=267.2
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCc--cccccc-------ccccccC--------------
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS--YDVNAC-------SLAKDQD-------------- 108 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~-------~~~~~~~-------------- 108 (430)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++... ..+..+ .+..+..
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 34578899999999999999999999999999999998654321 111110 0000000
Q ss_pred ------cccceeeecCCCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE
Q 014125 109 ------SYEASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181 (430)
Q Consensus 109 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (430)
.........|...|.+++| +|++. .|++|+.|++|++||..+++....+..|.. .|.+++|
T Consensus 131 v~~wd~~~~~~~l~gh~~~v~~v~f-------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-----~V~~v~f 198 (611)
T 1nr0_A 131 VFLFDTGTSNGNLTGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-----FVHSVRY 198 (611)
T ss_dssp EEETTTCCBCBCCCCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-----CEEEEEE
T ss_pred EEEeeCCCCcceecCCCCCceEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC-----ceEEEEE
Confidence 0011123457778899998 66775 699999999999999998888888877665 8999999
Q ss_pred CCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-
Q 014125 182 NPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY- 259 (430)
Q Consensus 182 ~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~- 259 (430)
+|++++|+ ++.|+.|++||+..+... ..+........+|...|.+++|+| ++.+|++++.|++|++||+++++.+.
T Consensus 199 spdg~~las~s~D~~i~lwd~~~g~~~-~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 199 NPDGSLFASTGGDGTIVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEE-EECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEECCCCcEe-eeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 99999999 559999999998764321 111011111237899999999999 67799999999999999998775443
Q ss_pred ------------------------------------------EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 260 ------------------------------------------VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 260 ------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.+.+|...|++++|+|+|++|++++ .|+.|++||+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDIST 355 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Confidence 3346888999999999999999999 999999999876
Q ss_pred CceEEEE-----------------------------eec--------------------------c--------------
Q 014125 298 AVQVVYK-----------------------------LYR--------------------------S-------------- 308 (430)
Q Consensus 298 ~~~~~~~-----------------------------~~~--------------------------~-------------- 308 (430)
+...... +.. .
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 5321100 000 0
Q ss_pred ---------cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 309 ---------SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 309 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
..+...+.+++|+|+|++|++|+.|+.|++||+.+++. +.. .+|...|++++|+|++++|++++.|+.
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~ 514 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK 514 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC
Confidence 01234577899999999999999999999999987653 233 679999999999999999999999999
Q ss_pred eeecCCC----------------------------ccccccCCCcEEEEeecccc-cc-cccCCC-CcceeeeeccC
Q 014125 378 FPVDDFE----------------------------DLHLSGDENCVSVWSFLYAS-MM-ENADGI-NGCEFNCQSEH 423 (430)
Q Consensus 378 ~~vw~~~----------------------------~l~~~~~d~~i~~w~~~~~~-~~-~~~~~~-~~~~~~~~~~~ 423 (430)
+++|+.. .|++++.|++|++|++..+. .. ..+.+| .+ .+.++...
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~-~v~~v~fs 590 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIWL 590 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS-CEEEEEEE
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCccc-CeeEEEEc
Confidence 9999432 27888999999999998765 33 566677 33 45554443
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-47 Score=330.88 Aligned_cols=284 Identities=20% Similarity=0.246 Sum_probs=242.2
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++... .....|..+|.+++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~-----------------~~~~~~~~~v~~~~~---- 63 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-----------------RSIQVTETPVRAGKF---- 63 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE----
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee-----------------EEeeccCCcEEEEEE----
Confidence 45578899999999999999999999999999999999865332 123345678999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++ +.|++|++||++...
T Consensus 64 ---~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----- 130 (304)
T 2ynn_A 64 ---IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130 (304)
T ss_dssp ---EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----
T ss_pred ---eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----
Confidence 66899999999999999999999999988887765 8999999999999985 599999999997632
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEcc--CCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSR--DGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~~d 287 (430)
.......+|...|.+++|+|.++.+|++|+.|++|++||+++......+. .|...+..++|+| ++.+|++++ .|
T Consensus 131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D 207 (304)
T 2ynn_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DD 207 (304)
T ss_dssp --EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TT
T ss_pred --chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CC
Confidence 12223468889999999999777899999999999999998877655554 4667899999987 678999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
+.|++||+++.... ..+ .+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus 208 ~~i~iWd~~~~~~~-~~~---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 208 LTIKIWDYQTKSCV-ATL---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp SEEEEEETTTTEEE-EEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCG
T ss_pred CeEEEEeCCCCccc-eee---CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCC
Confidence 99999999987533 233 57889999999999999999999999999999999999999999999999999999886
Q ss_pred --EEEEeeCCc
Q 014125 368 --MAASSSGHR 376 (430)
Q Consensus 368 --~l~s~~~d~ 376 (430)
++++++.||
T Consensus 284 ~~~~asg~~~g 294 (304)
T 2ynn_A 284 KNYIASGFDNG 294 (304)
T ss_dssp GGCEEEEETTE
T ss_pred ceEEEEecCCc
Confidence 577776443
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-46 Score=332.11 Aligned_cols=307 Identities=20% Similarity=0.278 Sum_probs=240.7
Q ss_pred cceeecccCCC-ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNN-FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~-~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++... ........|...|.+++|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------~~~~~~~~h~~~v~~~~~-- 69 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------CKSVLSEGHQRTVRKVAW-- 69 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------EEEEECSSCSSCEEEEEE--
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------eeeeeccccCCcEEEEEE--
Confidence 45667889988 9999999999999999999999999998754210 011122457789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR 206 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~ 206 (430)
+|++++|++|+.|+++++|++..+. .+..+..|.. .|.+++|+|++++|++ +.|+.|++||++....
T Consensus 70 -----sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 70 -----SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp -----CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred -----CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 7789999999999999999998764 3455555554 8999999999999995 5899999999976432
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
. .......+|...|.+++|+| ++.+|++|+.|++|++||.++++ ....+.+|...|++++|+|++++|++++
T Consensus 140 ~-----~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 140 Y-----ECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp E-----EEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred e-----EEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 1 11122367888999999999 67799999999999999998775 4567889999999999999999999999
Q ss_pred cCCCeEEEEeCCCCce-----------EEEEee-cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe------
Q 014125 285 RKDPYILCWDLRKAVQ-----------VVYKLY-RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW------ 346 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~-----------~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------ 346 (430)
.|+.|++||...... ...... ....|...|.+++|+|++..|++++.|+.|++|+...+..
T Consensus 214 -~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 214 -DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp -TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred -CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 999999999643211 001111 1123788999999999999999999999999999876532
Q ss_pred ---ecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccc
Q 014125 347 ---ISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMME 407 (430)
Q Consensus 347 ---~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~ 407 (430)
.....+|...|++++|+|++. +|++++ .||.|++|++...+.+.
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s-----------------~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCS-----------------DDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTTEEEEEE-----------------TTSCEEEEEECC-----
T ss_pred EEEeeecccccCcEeEeEEeCCCceEEEEcC-----------------CCCcEEEEEecCCCCcc
Confidence 122357899999999999985 888887 57788888887666543
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.2e-47 Score=341.04 Aligned_cols=298 Identities=15% Similarity=0.200 Sum_probs=237.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...+++.+|.+.|++++|+|++++|+||+.||+|+|||+.+++.. .....|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~~~--- 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-----------------HAIKLHCPWVMECAF--- 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-----------------EEEECCCTTCCCCEE---
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-----------------eEEecCCCCEEEEEE---
Confidence 345689999999999999999999999999999999999865332 123345678999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCc-------eeeeeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEEc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d~ 201 (430)
+|++++|++|+.|+.+++|++.+.. ....+..| ...+.++.|+|++ ..|+ ++.|++|++||+
T Consensus 117 ----s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh-----~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 117 ----APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH-----KGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp ----CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC-----SSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred ----CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC-----CcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 7789999999999999999987542 12223333 3478899999975 4455 559999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccccCeEEEEEccCCCEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
.++.... .+ ......+|...|.+++|+|.++++|++|+.|++|++||++ ..+.+..+.+|.+.|++++|+|++++|
T Consensus 188 ~~~~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 188 TTGQRIS-IF--GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp TTCCEEE-EE--CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred CCCcEEE-Ee--ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE
Confidence 8743211 11 0112257888999999988778899999999999999998 457788899999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecc---cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc----ccc
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRS---SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF----QAA 353 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~ 353 (430)
++++ .|++|++||++++.......... ..+...+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 265 ~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 265 GTGS-DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EEEC-SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEEc-CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999 99999999999875443221110 112335889999999999999999999999999999887766 679
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+.|.+++|+|++.+|++|+.|+.+++|
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 9999999999999999999854433333
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-46 Score=330.43 Aligned_cols=300 Identities=13% Similarity=0.124 Sum_probs=228.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|...|.+++|+|||++|++++ |+++++||........... ............+...|.+++| +|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~-------s~ 92 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA------APNEGFCSAGVQTEAGVADLTW-------VG 92 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG------TTCGGGCSEEEEESSCEEEEEE-------ET
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc------cCCcceeeeeeccCCCEEEEEE-------eC
Confidence 35677899999999999999888 6788888742110000000 0111122233445568999999 44
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+ ..|++|+.||+|++||+.+++......... ..|...|.+++|+|++++|++ +.|+.|++||++++ ...
T Consensus 93 d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~-~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--------~~~ 162 (344)
T 4gqb_B 93 E-RGILVASDSGAVELWELDENETLIVSKFCK-YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--------VVL 162 (344)
T ss_dssp T-TEEEEEETTSEEEEEEECTTSSCEEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EEE
T ss_pred C-CeEEEEECCCEEEEEeccCCCceeEeeccc-cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------cEE
Confidence 5 468899999999999999987665544211 123448999999999999995 58999999999873 222
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCC-CEEEEEecCCCeEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDG-NYLYTGGRKDPYILC 292 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i 292 (430)
..+.+|...|.+++|+|++..+|++++.|++|++||+++++....+. .+...+.+++|+|++ ++|++++ .||.|++
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~ 241 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSL 241 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEE
T ss_pred EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEE
Confidence 33468999999999999777899999999999999999998887764 345679999999964 5677777 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc-EEE
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP-MAA 370 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 370 (430)
||++++.... . ..+|...|++++|+|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++ +|+
T Consensus 242 wd~~~~~~~~-~---~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 242 VDTKSTSCVL-S---SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EESCC--CCE-E---EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEE
T ss_pred EECCCCcEEE-E---EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEE
Confidence 9999875432 2 25789999999999998 58999999999999999988765 5688999999999999987 556
Q ss_pred EeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 371 SSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 371 s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
+++ .|++|++|++...
T Consensus 317 s~s-----------------~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 317 TVG-----------------WDHQVVHHVVPTE 332 (344)
T ss_dssp EEE-----------------TTSCEEEEECCC-
T ss_pred EEc-----------------CCCeEEEEECCCC
Confidence 776 4666777766543
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-46 Score=332.39 Aligned_cols=298 Identities=12% Similarity=0.150 Sum_probs=225.6
Q ss_pred cccCCCceeEEEECcCCceEEEecC------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSE------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
...|...|++++|||||++||+|+. |+.|++|+..++.... ........|...|.+++|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~V~~~~~-- 102 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-------------SLCTAGVQTEAGVTDVAW-- 102 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-------------GGCSEEEECSSCEEEEEE--
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-------------eEecccCCCCCCEEEEEE--
Confidence 3579999999999999999999998 7789999887653321 122234456778999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++. +++++.||+|++||+.+++........ ...|...|.+++|+|++++|++ +.|+.|++||++++
T Consensus 103 -----s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~-~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---- 171 (357)
T 4g56_B 103 -----VSEKG-ILVASDSGAVELWEILEKESLLVNKFA-KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---- 171 (357)
T ss_dssp -----ETTTE-EEEEETTSCEEEC--------CCCCEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT----
T ss_pred -----cCCCC-EEEEECCCEEEEeeccccceeEEEeec-cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----
Confidence 55664 567888999999999988654432211 1133448999999999999995 58999999999863
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEEccCC-CEEEEEec
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDG-NYLYTGGR 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~ 285 (430)
.....+.+|...|++++|+|++..++++++.|++|++||+++++....+. .|...+++++|+|++ .+|++++
T Consensus 172 ----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~- 246 (357)
T 4g56_B 172 ----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD- 246 (357)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-
T ss_pred ----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-
Confidence 22233467889999999999777799999999999999999987765543 466789999999985 5677777
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.|+.|++||++++.... .+ ..|...|++++|+|++ ++|++|+.|++|+|||+++++++..+ +|.+.|++++|+|
T Consensus 247 ~d~~i~~wd~~~~~~~~-~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQ-TS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp SSSCEEEEESSCGGGCE-EE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred cccceeEEECCCCcEeE-EE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 99999999999875442 22 5788899999999987 68999999999999999999887655 6999999999999
Q ss_pred -CCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 365 -FLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 365 -~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
++.+|++++. |++|++|++......
T Consensus 322 ~d~~~l~s~s~-----------------Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 322 LDHSKFTTVGW-----------------DHKVLHHHLPSEGRT 347 (357)
T ss_dssp SSTTEEEEEET-----------------TSCEEEEECC-----
T ss_pred CCCCEEEEEcC-----------------CCeEEEEECCCCCcc
Confidence 7889999884 666777766544433
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-45 Score=321.10 Aligned_cols=285 Identities=15% Similarity=0.235 Sum_probs=236.1
Q ss_pred cceeecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++....... .........|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~-- 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF------------GVPVRSFKGHSHIVQDCTL-- 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE------------EEEEEEEECCSSCEEEEEE--
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc------------cccceEEeCCcccEEEEEE--
Confidence 4556889999999999999965 899999999999999986432100 1112234568889999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~ 208 (430)
+|++.+|++|+.|++|++||+.+++....+..|.. .|.+++|+|++.++++ +.|+.|++||++..
T Consensus 74 -----s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---- 139 (319)
T 3frx_A 74 -----TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---- 139 (319)
T ss_dssp -----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSCEEEEETTSC----
T ss_pred -----CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Confidence 77899999999999999999999999888887765 8999999999999985 59999999999641
Q ss_pred cccccccCCCCCCCcceEEEEEcCCC-----CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 283 (430)
......+|...+.++.|.|.. +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|+++
T Consensus 140 -----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 140 -----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp -----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred -----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 112235788899999999842 3489999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc--------cccC
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ--------AAAD 355 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~ 355 (430)
+ .||.|++||+++..... .+ .+...+.+++|+|++.+|++++.+ .+++|+++.+..+..+. .|..
T Consensus 215 ~-~dg~i~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 215 G-KDGEIMLWNLAAKKAMY-TL----SAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp E-TTCEEEEEETTTTEEEE-EE----ECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred e-CCCeEEEEECCCCcEEE-Ee----cCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCc
Confidence 9 99999999999875432 32 234679999999999999988765 59999998776554442 3566
Q ss_pred CeeEEEEcCCCcEEEEeeCC
Q 014125 356 TVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d 375 (430)
.+.+++|+|+|++|++++.|
T Consensus 288 ~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp CEEEEEECTTSSEEEEEETT
T ss_pred ceeEEEECCCCCEEEEeecC
Confidence 79999999999999999853
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.9e-45 Score=319.23 Aligned_cols=280 Identities=23% Similarity=0.378 Sum_probs=235.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++.. .....|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~--- 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAW--- 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEE---
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEE---
Confidence 445678899999999999999999999999999999999765432 123346678999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.++++ +.|+.|++||++...
T Consensus 74 ----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---- 140 (312)
T 4ery_A 74 ----SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---- 140 (312)
T ss_dssp ----CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCC----
T ss_pred ----cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE----
Confidence 77899999999999999999999999888887665 8999999999999995 589999999998632
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.......|..+|.+++|+| ++.+|++++.||.|++||+++++.+..+. .+...+..++|+|++++|++++ .|+
T Consensus 141 ----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~ 214 (312)
T 4ery_A 141 ----CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDN 214 (312)
T ss_dssp ----EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTT
T ss_pred ----EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCC
Confidence 1222356778899999999 67799999999999999999988776654 4567899999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccc---eEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQ---RILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.|++||+++..... .+ ..|... +......+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 215 ~i~iwd~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 215 TLKLWDYSKGKCLK-TY---TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290 (312)
T ss_dssp EEEEEETTTTEEEE-EE---CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred eEEEEECCCCcEEE-EE---EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence 99999999875432 22 233322 233333467899999999999999999999999999999999999999999
Q ss_pred CcEEEEee
Q 014125 366 LPMAASSS 373 (430)
Q Consensus 366 ~~~l~s~~ 373 (430)
+++|++++
T Consensus 291 ~~~l~s~~ 298 (312)
T 4ery_A 291 ENIIASAA 298 (312)
T ss_dssp SSEEEEEE
T ss_pred CCceEEEE
Confidence 99999987
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7e-45 Score=322.74 Aligned_cols=291 Identities=19% Similarity=0.332 Sum_probs=233.1
Q ss_pred cceeecccCCCceeEEEE-----Cc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee
Q 014125 51 NQFRTSSIPNNFLKGIKW-----SP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~-----sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 124 (430)
.....+.+|.+.|++++| +| ++++|++|+.|++|++||+......... .........|...|.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~----------~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF----------GIPHKALTGHNHFVSD 81 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS----------EEEEEEECCCSSCEEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc----------ccccchhccCCCceEE
Confidence 456688999999999999 77 9999999999999999998754321100 1112234567889999
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCC
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR 203 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~ 203 (430)
++| +|++.++++++.|++|++||+.+++....+..|.. .|.+++|+|++++|+ ++.|+.|++||+..
T Consensus 82 ~~~-------~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 82 LAL-------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EEE-------CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred EEE-------CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 999 67899999999999999999999999888887765 899999999999988 45899999999963
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCC---------ceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT---------GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
.. .........|...+.+++|+|++. .++++++.|+.|++||. ..+....+.+|...|.+++|+
T Consensus 150 ~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 150 EC------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS 222 (343)
T ss_dssp CE------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC
T ss_pred Cc------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC
Confidence 21 011112346788899999999542 68999999999999994 566777888999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec--ccc-
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS--GFQ- 351 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~- 351 (430)
|+|++|++++ .||.|++||++......... .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+.
T Consensus 223 ~~g~~l~sgs-~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 223 PNGKYIATGG-KDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp TTSSEEEEEE-TTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC
T ss_pred CCCCEEEEEc-CCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec
Confidence 9999999999 99999999995543322222 234569999999999887755 57789999998776543 332
Q ss_pred ----------cccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 352 ----------AAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 352 ----------~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+|...|.+++|+|++++|++|+.||
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 6778899999999999999998543
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-44 Score=345.89 Aligned_cols=306 Identities=15% Similarity=0.174 Sum_probs=253.2
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..+++.+.+++|+|||++||+++ ++.|++|++.++... .....|...|++++| +|
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~-----------------~~~~~h~~~v~~~~~-------sp 69 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKT-------SP 69 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC-----------------EEECCCSSCEEEEEE-------CT
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccC-----------------eEecCCCCceEEEEE-------CC
Confidence 34577789999999999999998 469999999755322 233457789999999 78
Q ss_pred CCceEEEEeCCCcEEEEeccCCce--eeeeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEEcCCCCCccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFDVHRPGRDFE 209 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~v~d~~~~~~~~~ 209 (430)
+|++||+|+.||+|++||+.+++. ...+..+.. .|.+++|+|+++.|+++ .+ +.|++||...
T Consensus 70 dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-----~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~------ 138 (611)
T 1nr0_A 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT------ 138 (611)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC------
T ss_pred CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC-----ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC------
Confidence 999999999999999999976543 334554444 89999999999999854 33 3688887532
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
....+.+|...|.+++|+|++...|++|+.|++|++||..+++....+.+|...|.+++|+|+|++|++++ .|+.
T Consensus 139 ----~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s-~D~~ 213 (611)
T 1nr0_A 139 ----SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGT 213 (611)
T ss_dssp ----BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSC
T ss_pred ----CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE-CCCc
Confidence 12234789999999999996666799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeec----ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-----------------
Q 014125 290 ILCWDLRKAVQVVYKLYR----SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS----------------- 348 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------- 348 (430)
|++||+.++.... .+.. ..+|...|.+++|+|+|++|++++.|++|++||+.+++.+.
T Consensus 214 i~lwd~~~g~~~~-~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 214 IVLYNGVDGTKTG-VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEEEETTTCCEEE-ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEEEECCCCcEee-eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 9999998875432 2211 12689999999999999999999999999999998876543
Q ss_pred --------------------------ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC------------------
Q 014125 349 --------------------------GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE------------------ 384 (430)
Q Consensus 349 --------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~------------------ 384 (430)
.+.+|...|.+++|+|++++|++++.|+.+++||..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 372 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence 334788899999999999999999999999999743
Q ss_pred -------ccccccCCCcEEEEeecccc
Q 014125 385 -------DLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 385 -------~l~~~~~d~~i~~w~~~~~~ 404 (430)
.+++++.|+.+++|+.....
T Consensus 373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 373 IKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred EEECCCCcEEEEEcCCceEEeecCCcc
Confidence 26778899999999987544
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=318.66 Aligned_cols=298 Identities=17% Similarity=0.266 Sum_probs=226.3
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeec-CCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 129 (430)
+..+.+.+|.+.|++++|+|+ +||+|+.|++|++||+..+.. .....+... |...|.+++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~-- 66 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------TLIDVLDETAHKKAIRSVAW-- 66 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------EEEEEECTTCCCSCEEEEEE--
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------EEEEEEecCCccCCEEEEEE--
Confidence 345678899999999999997 999999999999999975421 001111122 7789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDV 201 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~ 201 (430)
+|++++|++|+.|++|++||+... +....+..|.. .|.+++|+|++++|++ +.|+.|++||+
T Consensus 67 -----sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 67 -----RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp -----CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred -----CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 678999999999999999998532 33444554443 8999999999999995 58999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc--eeeEEeeccccCeEEEEEccC--C
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHVQFSRD--G 277 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~ 277 (430)
+..+..... ...+.+|...|.+++|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +
T Consensus 137 ~~~~~~~~~----~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 137 DESGEEYEC----ISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp CTTCCCCEE----EEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred cCCCCCeEE----EEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence 643322221 122367888999999999 6779999999999999998766 677888999999999999998 6
Q ss_pred CEEEEEecCCCeEEEEeCCCCc----eEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC--eec-c
Q 014125 278 NYLYTGGRKDPYILCWDLRKAV----QVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--WIS-G 349 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~-~ 349 (430)
..|++++ .|++|++||++... ......... ..|...|.+++|++++ +|++++.||.|++||..+++ .+. .
T Consensus 212 ~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 212 FRLCSGS-DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp CEEEEEE-TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred eEEEEEe-CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 7899998 99999999986531 111111112 2388899999999765 89999999999999998774 232 3
Q ss_pred cccccC-CeeEEEEcC--CCcEEEEeeCCceeeecCC
Q 014125 350 FQAAAD-TVNGFSFHP--FLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~~~~-~v~~~~~~~--~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+|.. .|.+++|+| ++++|++++.|+.|++|+.
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 356877 899999999 6889999986555555543
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-44 Score=325.82 Aligned_cols=301 Identities=19% Similarity=0.301 Sum_probs=234.4
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccccccccccc-ccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-DQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
+|.+.|++++|+|||++||+|+ ++.++||++.++.....+....... ............+...|.+++| +|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-------s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SP 133 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-------CT
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE-------CC
Confidence 6999999999999999999987 6799999998876644433221100 0000001111123345899999 77
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++++|++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++ +.|+.|++||+++.... ..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~----~~-- 202 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----LT-- 202 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EE--
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE----EE--
Confidence 999999999999999999999998888877765 8999999999999984 59999999999864211 11
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-------eccccCeEEEEEccCCCEEEEEecCCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-------HGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
..+...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++ .|+
T Consensus 203 ---~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~ 278 (393)
T 1erj_A 203 ---LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDR 278 (393)
T ss_dssp ---EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred ---EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCC
Confidence 1234569999999977789999999999999999998877666 56889999999999999999999 999
Q ss_pred eEEEEeCCCCceEE--------EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEE
Q 014125 289 YILCWDLRKAVQVV--------YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360 (430)
Q Consensus 289 ~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (430)
.|++||+++..... .......+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 99999998643210 0111225788899999999999999999999999999999999999999999999999
Q ss_pred EEcC------CCcEEEEeeCCceeeec
Q 014125 361 SFHP------FLPMAASSSGHRRFPVD 381 (430)
Q Consensus 361 ~~~~------~~~~l~s~~~d~~~~vw 381 (430)
+|+| ++++|++++.|+.++||
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 9986 67888888754333333
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.9e-43 Score=310.98 Aligned_cols=298 Identities=19% Similarity=0.290 Sum_probs=242.3
Q ss_pred ceeecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
+..++.||.+.|++|+|+|+ +++|||||.||+|+|||+.+.+.... ........|...|.+++|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~------------~~~~~l~~h~~~V~~~~~--- 94 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG------------IPQRALRGHSHFVSDVVI--- 94 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE------------EEEEEECCCSSCEEEEEE---
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc------------eeeEEEeCCCCCEEEEEE---
Confidence 34578999999999999997 68999999999999999986543211 112234457789999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++++|++++.|+.|++|+............+.. .+..+.+++++.++++ +.|+.+++||+....
T Consensus 95 ----s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---- 161 (340)
T 4aow_A 95 ----SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---- 161 (340)
T ss_dssp ----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSCE----
T ss_pred ----CCCCCEEEEEcccccceEEeecccceeeeecCCCC-----ceeEEEEeecCccceeecCCCeEEEEEeCCCc----
Confidence 77899999999999999999999887777766554 7788899999998884 589999999986532
Q ss_pred ccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.......+|...+..++|+++. ..++++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++++ .|+
T Consensus 162 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg 237 (340)
T 4aow_A 162 ---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDG 237 (340)
T ss_dssp ---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTC
T ss_pred ---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCC
Confidence 1222346778889999999864 34678899999999999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc---------ccccCCeeE
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF---------QAAADTVNG 359 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~~~~v~~ 359 (430)
.|++||+++..... .+ .+...+.++.|+|++.+ ++++.|+.|++||++++..+..+ .+|...|++
T Consensus 238 ~i~iwd~~~~~~~~-~~----~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (340)
T 4aow_A 238 QAMLWDLNEGKHLY-TL----DGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS 311 (340)
T ss_dssp EEEEEETTTTEEEE-EE----ECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred eEEEEEeccCceee-ee----cCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence 99999999875432 22 24567999999998765 55667999999999987665544 368889999
Q ss_pred EEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 360 FSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 360 ~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
++|+|++++|++|+ .||.|++|++..|.
T Consensus 312 l~~s~dg~~l~sgs-----------------~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 312 LAWSADGQTLFAGY-----------------TDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECTTSSEEEEEE-----------------TTSCEEEEEEEC--
T ss_pred EEECCCCCEEEEEe-----------------CCCEEEEEeCCCcC
Confidence 99999999999998 46777777777654
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-43 Score=336.75 Aligned_cols=299 Identities=21% Similarity=0.404 Sum_probs=252.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|...|++++|+|++++|++++.|+.|++|+.... .......|...|.+++|
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------~~~~~~~h~~~v~~~~~---- 311 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------LLQTLTGHSSSVWGVAF---- 311 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------EEEEECCCSSCEEEEEE----
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------EEEEEecCCCCeEEEEE----
Confidence 45578899999999999999999999999999999997532 11233456789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++..|++++.||.|++||+... ....+..+.. .+.+++|+|++++++++ .|+.|++|+... .
T Consensus 312 ---~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~---- 376 (577)
T 2ymu_A 312 ---SPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNRNG--Q---- 376 (577)
T ss_dssp ---CTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTC--C----
T ss_pred ---CCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEcCCC--C----
Confidence 778999999999999999998654 3445554443 89999999999999955 899999999643 1
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
......+|...|++++|+| ++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|
T Consensus 377 ---~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v 450 (577)
T 2ymu_A 377 ---LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTV 450 (577)
T ss_dssp ---EEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEE
T ss_pred ---EEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEE
Confidence 1122356788999999999 6679999999999999996 5677888899999999999999999999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++||.... ....+ .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 451 ~~w~~~~~--~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 451 KLWNRNGQ--LLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEEETTSC--EEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred EEEECCCC--EEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 99997543 22222 578899999999999999999999999999995 6888999999999999999999999999
Q ss_pred EeeCCceeeecCCC------------------------ccccccCCCcEEEEe
Q 014125 371 SSSGHRRFPVDDFE------------------------DLHLSGDENCVSVWS 399 (430)
Q Consensus 371 s~~~d~~~~vw~~~------------------------~l~~~~~d~~i~~w~ 399 (430)
+++.|+.|++||.. .|++++.|++|++||
T Consensus 525 s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999643 277788888888886
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-43 Score=334.51 Aligned_cols=322 Identities=21% Similarity=0.382 Sum_probs=270.3
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|...|++++|+|++++|++++.|+.|++|+.... .......|...|.+++|
T Consensus 213 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------~~~~~~~~~~~v~~v~~---- 270 (577)
T 2ymu_A 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------LLQTLTGHSSSVNGVAF---- 270 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------EEEEECCCSSCEEEEEE----
T ss_pred EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------EEEEEecCCCCEEEEEE----
Confidence 34567899999999999999999999999999999996532 11233456678999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++..|++++.|+.|++|+.. ++....+..+.. .|.+++|+|++..+++ +.|+.|++||+....
T Consensus 271 ---~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----- 336 (577)
T 2ymu_A 271 ---RPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----- 336 (577)
T ss_dssp ---CTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----
T ss_pred ---cCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 7789999999999999999964 556666665554 8999999999999984 589999999976421
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
.....+|...+.+++|+| ++..+++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++ .|+.|
T Consensus 337 ----~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v 409 (577)
T 2ymu_A 337 ----LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTV 409 (577)
T ss_dssp ----EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEE
T ss_pred ----eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEE
Confidence 112356788899999999 6779999999999999996 5677888889999999999999999999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
++||.... ....+ ..|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|+
T Consensus 410 ~~~~~~~~--~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 410 KLWNRNGQ--LLQTL---TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp EEECTTCC--EEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred EEEeCCCC--EEEEe---cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99996543 22222 578899999999999999999999999999996 5778888999999999999999999999
Q ss_pred EeeCCceeeecCCC------------------------ccccccCCCcEEEEeecccccccccCCCCcceeeeeccCc
Q 014125 371 SSSGHRRFPVDDFE------------------------DLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHE 424 (430)
Q Consensus 371 s~~~d~~~~vw~~~------------------------~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (430)
+++.|+.|++|+.+ .|++++.|+.|++||. .++.+..+.+|.+ .+.++...+
T Consensus 484 s~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~-~v~~~~fs~ 559 (577)
T 2ymu_A 484 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFSP 559 (577)
T ss_dssp EEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEECT
T ss_pred EEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC-CEEEEEEcC
Confidence 99999999999532 3889999999999995 5677888888877 455555544
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-43 Score=318.67 Aligned_cols=262 Identities=18% Similarity=0.304 Sum_probs=232.5
Q ss_pred eeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-E
Q 014125 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G 191 (430)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 191 (430)
.....|..+|++++| +|++.+|++|+.||+|++||+.+++....+..|.. .|.+++|+|++.+|++ +
T Consensus 102 ~~l~gh~~~V~~~~~-------~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-----~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 102 YALSGHRSPVTRVIF-------HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCS 169 (410)
T ss_dssp CEEECCSSCEEEEEE-------CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEE
T ss_pred EeecccCCcEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-----cEEEEEEcCCCCEEEEEe
Confidence 345678899999999 67899999999999999999999999888887765 8999999999999984 5
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.|+.|++||+... .....+.+|...|.+++|+| ++.+|++|+.|++|++||++++..+..+.+|...|.++
T Consensus 170 ~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 170 ADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp TTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 9999999999763 22233468889999999999 67799999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--------------------CCEEEEEc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--------------------GRHLGTGG 331 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~ 331 (430)
+|+|++.+|++++ .|+.|++||+++..... .+ ..|...|.+++|+|+ |.+|++|+
T Consensus 241 ~~~~~g~~l~s~s-~D~~v~vwd~~~~~~~~-~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 241 RPNQDGTLIASCS-NDQTVRVWVVATKECKA-EL---REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EECTTSSEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred EECCCCCEEEEEc-CCCeEEEEECCCCceee-Ee---cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 9999999999999 99999999999875432 22 578899999999996 67899999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------c
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------L 386 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l 386 (430)
.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||... +
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence 999999999999999999999999999999999999999999999999996532 7
Q ss_pred ccccCCCcEEEEee
Q 014125 387 HLSGDENCVSVWSF 400 (430)
Q Consensus 387 ~~~~~d~~i~~w~~ 400 (430)
++++.|++|++|++
T Consensus 396 ~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTSEEEEEC-
T ss_pred EEEeCCCcEEEEeC
Confidence 78888999999975
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-42 Score=310.15 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=253.9
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++... ....|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------------~~~~h~~~v~~~~~--- 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-----------------TLDGHTGTIWSIDV--- 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE---
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-----------------hhhhcCCcEEEEEE---
Confidence 3445788999999999999999999999999999999998764322 22346689999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcCCC
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRP 204 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~v~d~~~~ 204 (430)
+|++++|++++.||.|++||+.+++.+..+. +.. .+.+++|+|++.+++++ .+ +.|++||+...
T Consensus 83 ----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 83 ----DCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ----CTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS-----CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ----cCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC-----CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 7789999999999999999999999888877 332 89999999999999955 66 89999999875
Q ss_pred CCccccccc---ccCCCCCCCc--ceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCC
Q 014125 205 GRDFEKYST---LKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 205 ~~~~~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
......... .......+.. .+.+++|+| ++.+|++++.||.|++||+++ .+.+..+..|...|.+++|+|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence 432211100 1111223333 899999999 677999999999999999998 788888999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC--------------cEEEEEcCCC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG--------------LVHIYDLQTG 344 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~~~ 344 (430)
+|++++ .|+.|++||+++..... .+ .+...+..++|+|+++++++++.++ .+++||+.++
T Consensus 232 ~l~~~~-~d~~i~v~d~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 232 YFITSS-RDTNSFLVDVSTLQVLK-KY----ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEE-EE----ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred EEEEec-CCceEEEEECCCCceee-ee----cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 999999 99999999999875443 22 2677899999999999999999988 8999999999
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+.+..+.+|...|.+++|+|++++|++++ .||.|++|++..+.....+
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-----------------~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 306 EEIGRVQGHFGPLNTVAISPQGTSYASGG-----------------EDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEEECHHHHTCCC
T ss_pred cchhheecccCcEEEEEECCCCCEEEEEc-----------------CCCeEEEEECccccchhHH
Confidence 99999999999999999999999999998 4677888887766554443
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-43 Score=324.28 Aligned_cols=293 Identities=16% Similarity=0.237 Sum_probs=241.5
Q ss_pred CCceeEEEECcCCc-eEEEe----------cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 60 NNFLKGIKWSPDGS-SFLTS----------SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~s~----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
...|.+++|+|+|+ +|++| +.|+.|+|||+.++... .......|...|.+++|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------------~~~~~~~~~~~v~~~~~- 75 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------------KPIASLQVDSKFNDLDW- 75 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------------SCSCCCCCSSCEEEEEE-
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------------cEEEEEecCCceEEEEE-
Confidence 34689999999987 99999 89999999999865321 11123346678999999
Q ss_pred cccCccCCCCceEEEEeCCCcEEEEeccC----CceeeeeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcC
Q 014125 129 PHMSASDPTSCVFASTTRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVH 202 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~v~d~~ 202 (430)
+|++.+|++++.||.|++||+.+ .+....+..+.. .|.+++|+|+ +.+|+++ .|+.|++||+.
T Consensus 76 ------s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 76 ------SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp ------CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ------CCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 77899999999999999999987 345666655554 8999999998 7888855 89999999998
Q ss_pred CCCCccccc-ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------ccCeEEEEEcc
Q 014125 203 RPGRDFEKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------EGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~ 275 (430)
......... .........|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 754111000 01112335788899999999976889999999999999999999988888766 78899999999
Q ss_pred CC-CEEEEEecCCC---eEEEEeCCCCceEEEEeeccc-CCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 276 DG-NYLYTGGRKDP---YILCWDLRKAVQVVYKLYRSS-EHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 276 ~~-~~l~~~~~~d~---~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
++ .++++++ .|+ .|++||+++..... .... .|...|.+++|+| ++++|++++.||.|++||+++++.+..
T Consensus 225 ~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 225 KNSTRVATAT-GSDNDPSILIWDLRNANTPL---QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp SCTTEEEEEE-CCSSSCCCCEEETTSTTSCS---BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred CCCCEEEEEE-CCCCCceEEEEeCCCCCCCc---EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence 97 5788887 888 99999999864332 2224 6889999999999 899999999999999999999999999
Q ss_pred cccccCCeeEEEEcCCC-cEEEEeeCCceeeecCC
Q 014125 350 FQAAADTVNGFSFHPFL-PMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~-~~l~s~~~d~~~~vw~~ 383 (430)
+.+|...|.+++|+|++ .+|++++.|+.+++|+.
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 99999999999999999 89999999999999954
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-42 Score=334.59 Aligned_cols=295 Identities=19% Similarity=0.286 Sum_probs=241.1
Q ss_pred eeecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+.+|.+.|++|+|+|++ ++|+||+.||+|++|++.+..... .........|...|.+++|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~v~~---- 438 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------GVAQRRLTGHSHFVEDVVL---- 438 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------CEEEEEEECCSSCEEEEEE----
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------ccccceecCCCCcEEEEEE----
Confidence 34688999999999999864 799999999999999997643211 1122345568889999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++|+.||+|++||+.+++....+..|.. .|.+++|+|++.+|+ ++.|++|++||+....
T Consensus 439 ---s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~----- 505 (694)
T 3dm0_A 439 ---SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC----- 505 (694)
T ss_dssp ---CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSCE-----
T ss_pred ---CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-----
Confidence 77899999999999999999999998888877765 899999999999888 5599999999985421
Q ss_pred cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.........+|...|.+++|+|++ ...+++++.|++|++||+++++....+.+|.+.|++++|+|++++|++++ .||.
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~ 584 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGV 584 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSB
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCe
Confidence 112223345788899999999954 35899999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc---------------
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA--------------- 354 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------- 354 (430)
|++||++++.... . ..+...+.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 585 i~iwd~~~~~~~~-~----~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 585 VLLWDLAEGKKLY-S----LEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp CEEEETTTTEEEE-C----CBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred EEEEECCCCceEE-E----ecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 9999999875432 2 23456799999999998887765 5569999999988776654321
Q ss_pred ----CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 ----DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ----~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+++++|+|++++|++|+.||.|+||+.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 13789999999999999997666665554
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8e-42 Score=297.70 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=209.0
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| +|++.+|++++.||.|++||+.++..+..+..+.. +|.+++|+|++++|++ +.
T Consensus 8 ~~~~h~~~V~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 8 TFSNRSDRVKGIDF-------HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEEEECSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEET
T ss_pred eecCCCCceEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-----cEEEEEEeCCCCEEEEECC
Confidence 44567789999999 77899999999999999999999998888887665 8999999999999995 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV 271 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~ 271 (430)
|+.|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||++++ .....+.+|...|.++
T Consensus 76 d~~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 76 DFRIRVFNYNTGE--------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp TSEEEEEETTTCC--------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred CCEEEEEECCCCc--------EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 9999999998742 1222367889999999999 6779999999999999999887 5567788999999999
Q ss_pred EEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC--CCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 272 QFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP--SGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 272 ~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+|+| ++..|++++ .|+.|++||++......... ..+...+..+.|+| ++.+|++|+.|+.|++||+++++++.
T Consensus 147 ~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 147 AFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp EECTTCTTEEEEEE-TTSEEEEEETTCSSCSEEEE---CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred EECCCCCCEEEEEe-CCCeEEEEECCCCCccceec---cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 9999 578899999 99999999998765443222 35667788899987 67899999999999999999999999
Q ss_pred ccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 223 ~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9999999999999999999999998654444443
No 25
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-42 Score=317.62 Aligned_cols=296 Identities=15% Similarity=0.139 Sum_probs=224.3
Q ss_pred cceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+..+...+|...|+||+|+| ++++||+|+.||.|+|||+.++... .......|...|.+++|+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------~~~~~~gH~~~V~~l~f~p 174 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------TFIKGIGAGGSITGLKFNP 174 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------EEECCCSSSCCCCEEEECS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------eEEEccCCCCCEEEEEEeC
Confidence 44556678999999999999 5679999999999999999765321 1112345788999999944
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~ 208 (430)
. ++.+|++|+.||+|++||++++........+. ....+.+++|+|++.+|++| .||.|++||++..
T Consensus 175 ~------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---- 241 (435)
T 4e54_B 175 L------NTNQFYASSMEGTTRLQDFKGNILRVFASSDT---INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---- 241 (435)
T ss_dssp S------CTTEEEEECSSSCEEEEETTSCEEEEEECCSS---CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC----
T ss_pred C------CCCEEEEEeCCCEEEEeeccCCceeEEeccCC---CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc----
Confidence 2 67899999999999999998765433333222 22367789999999999965 8999999998642
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE---EeeccccCeEEEEEccCCCEEEEEec
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY---VLHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
....+.+|...|.+++|+|++..++++|+.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++
T Consensus 242 -----~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~- 315 (435)
T 4e54_B 242 -----ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD- 315 (435)
T ss_dssp -----BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-
T ss_pred -----eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-
Confidence 1223467889999999999778899999999999999998865433 3357889999999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCC--ccceEEEEEcCCCCEEEEEc------------cCCcEEEEEcCCCCeecccc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEH--TNQRILFDIEPSGRHLGTGG------------QDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~ 351 (430)
.||.|++||+++.............+ ...+..+.|+|++.++++++ .++.|++||..+++.+..+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 99999999999876554332211111 11233456677666666554 34579999999999988764
Q ss_pred -cccCCeeEE-EEcCCCcEEEEeeCCceeeec
Q 014125 352 -AAADTVNGF-SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 352 -~~~~~v~~~-~~~~~~~~l~s~~~d~~~~vw 381 (430)
+|...|.++ +|+|+|.+|++|+ |+.|+||
T Consensus 396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 677788887 6999999999875 3333333
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-42 Score=299.61 Aligned_cols=264 Identities=19% Similarity=0.280 Sum_probs=222.3
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
..|...|++++|.|.. .+++.+|++|+.|++|++|++..++... .+..|.. .|.+++|++++.++++ +.
T Consensus 29 ~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~-----~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-----GVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp TSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECSSSSEEEEEET
T ss_pred ccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCC-----CEEEEEECCCCCEEEEEeC
Confidence 3577899999996531 1356799999999999999998776433 3444443 8999999999999985 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||+..+.. ......+...+.+++|+| ++.+|++|+.+|.|++||+++++....+..|...|.+++
T Consensus 101 D~~i~lWd~~~~~~--------~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 101 DAHIRLWDLENGKQ--------IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp TSEEEEEETTTTEE--------EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred CCcEEEEECCCCCE--------EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 99999999976421 112245566788999999 677999999999999999999999889988999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|+|++++|++++ .||.|++||++++... ..+ .+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+
T Consensus 172 ~spdg~~lasg~-~dg~i~iwd~~~~~~~-~~~---~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 172 YSPDGKYLASGA-IDGIINIFDIATGKLL-HTL---EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEETTTTEEE-EEE---CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred ECCCCCEEEEEc-CCCeEEEEECCCCcEE-EEE---cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 999999999999 9999999999987433 232 57888999999999999999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-------------------------cccccCCCcEEEEeec
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-------------------------l~~~~~d~~i~~w~~~ 401 (430)
|...|.+++|+|++.+|++++.|+.+++||... |++++.|+.|++||..
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999996432 7888889999999863
No 27
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-41 Score=307.67 Aligned_cols=309 Identities=13% Similarity=0.115 Sum_probs=243.7
Q ss_pred cceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...+.+.+|.+.|++++|+| ++|++|+.||.|++|++.++..... .........|...|.+++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~--- 70 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----------KDKSYSHFVHKSGLHHVDV--- 70 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------GGGEEEEECCTTCEEEEEE---
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------CCcceEEecCCCcEEEEEE---
Confidence 45668899999999999999 7999999999999999987642111 1112233467789999999
Q ss_pred cCccCCC----C---ceEEEEeCCCcEEEEeccCCce-----eeeeecccccccccceEEEEEC----CCCcE-EEE-Ec
Q 014125 131 MSASDPT----S---CVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAFN----PTGTK-IFA-GY 192 (430)
Q Consensus 131 ~~~~~~~----~---~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~----~~~~~-l~~-~~ 192 (430)
+|+ + .+|++++.||.|++|++.+++. ...+..+........|.+++|+ |++.+ |++ +.
T Consensus 71 ----~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 71 ----LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp ----EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred ----ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 456 8 8999999999999999998886 6666665311002389999999 99998 875 58
Q ss_pred CCeEEEEEcCC------CCCcc-ccccccc---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee
Q 014125 193 NKSVRVFDVHR------PGRDF-EKYSTLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 193 d~~i~v~d~~~------~~~~~-~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~ 262 (430)
|+.|++||+.. ..... .....+. .....|...+.+++|+| ++ ++++++.||.|++||+++++.+..+.
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 99999999986 22111 0000110 01144678899999999 45 99999999999999999999999999
Q ss_pred c---c---ccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceEEEEeecccC-------------CccceEEEEE
Q 014125 263 G---Q---EGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQVVYKLYRSSE-------------HTNQRILFDI 320 (430)
Q Consensus 263 ~---~---~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~v~~~~~ 320 (430)
. | ...|.+++|+|++++|++++ .| +.|++||+++..... .+ .. |...|.+++|
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIG-SL---SVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEE-EE---CBC--------CCBSBSSCEEEEEE
T ss_pred ccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcccc-ee---ccCcccccccccccccCCcEEEEEE
Confidence 8 8 99999999999999999999 89 999999999875432 22 34 8889999999
Q ss_pred cCCCCEEEEEccCCcEEEEEcCCCCeecccc------cc---------------cCCeeEEEEcCCC----------cEE
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------AA---------------ADTVNGFSFHPFL----------PMA 369 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l 369 (430)
+|++++|++++.||.|++||+.+++.+..+. +| ...|.+++|+|++ ++|
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l 379 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 379 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceE
Confidence 9999999999999999999999999999998 77 8999999999998 677
Q ss_pred EEeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 370 ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 370 ~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
++++ .|+.|++|++..+
T Consensus 380 ~s~~-----------------~dg~i~iw~~~~g 396 (397)
T 1sq9_A 380 CCVC-----------------LDRSIRWFREAGG 396 (397)
T ss_dssp EEEE-----------------TTTEEEEEEEEC-
T ss_pred EEec-----------------CCCcEEEEEcCCC
Confidence 7776 4666777766544
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.6e-42 Score=302.65 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=203.8
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeec------ccccccccceEEEEECCCCcEEEEE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA------YDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
+...|.+++| +|||.+|++++ |+++++||............ .....+...|.+++|+|++.+++++
T Consensus 29 ~~~~v~~~~f-------s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s 100 (344)
T 4gqb_B 29 MERQLEAARY-------RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVAS 100 (344)
T ss_dssp CCSEEEEEEE-------CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEE
T ss_pred ccCCEEEEEE-------CCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEE
Confidence 4467999999 78999998887 77888887421100000000 0011123379999999998777788
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.||.|++||+.++.... .......+|...|++++|+| ++.+|++|+.|++|++||+++++.+..+.+|...|+++
T Consensus 101 ~dg~v~lWd~~~~~~~~----~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 101 DSGAVELWELDENETLI----VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp TTSEEEEEEECTTSSCE----EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeccCCCcee----EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 99999999998753321 12222357899999999999 67799999999999999999999999999999999999
Q ss_pred EEccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 272 QFSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 272 ~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
+|+|++. .|++++ .|+.|++||++++..... + ....+...+.+++|+|+ +++|++|+.||.|++||+++++++..
T Consensus 176 ~~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 176 AASPHKDSVFLSCS-EDNRILLWDTRCPKPASQ-I-GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EECSSCTTEEEEEE-TTSCEEEEETTSSSCEEE-C-C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EecCCCCCceeeec-cccccccccccccceeee-e-ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 9999986 567777 999999999998754432 2 22345667899999995 57899999999999999999999999
Q ss_pred cccccCCeeEEEEcCCC-cEEEEeeCCceeeecCCCc---cccccCCCcEEEEeec
Q 014125 350 FQAAADTVNGFSFHPFL-PMAASSSGHRRFPVDDFED---LHLSGDENCVSVWSFL 401 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~-~~l~s~~~d~~~~vw~~~~---l~~~~~d~~i~~w~~~ 401 (430)
+.+|...|++++|+|++ ++|++++.|+.|+|||... +...++.+.|+--.+.
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS 308 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence 99999999999999998 5899999888888887543 3334555555544444
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-41 Score=299.30 Aligned_cols=262 Identities=16% Similarity=0.289 Sum_probs=223.3
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
..+|...|++++| +|++++|++|+.||+|++||+.+++....+..+.. .|.+++|+|++.++++ +.|
T Consensus 51 l~gH~~~v~~~~~-------s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 51 LRGHLAKIYAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-----WVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp ECCCSSCEEEEEE-------CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-----CEEEEEECTTSSEEEEEETT
T ss_pred ecCCCCceEEEEE-------CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-----cEEEEEECCCCCEEEEEeCC
Confidence 3457789999999 77899999999999999999999998888877665 8999999999999995 589
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
+.|++|++........ ......+|...+.++.|+++ + .+++++.|++|++||+++++.+..+.+|.+.|.+++|
T Consensus 119 ~~v~iw~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 119 NICSIYNLKTREGNVR----VSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp CEEEEEETTTCSBSCE----EEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CeEEEEECccCCCcce----eEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 9999999976432221 12234678889999999984 3 5889999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA- 352 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 352 (430)
+|+++++++++ .|+.|++||++++.... . ..+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..
T Consensus 193 ~~~~~~l~sg~-~d~~v~~wd~~~~~~~~-~---~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 193 APDTRLFVSGA-CDASAKLWDVREGMCRQ-T---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTCSEEE-E---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred CCCCCEEEEEe-CCCcEEEEECCCCeeEE-E---EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC
Confidence 99999999999 99999999999875432 2 257889999999999999999999999999999999887766642
Q ss_pred -ccCCeeEEEEcCCCcEEEEeeCCceeeecCCC-------------------------ccccccCCCcEEEEe
Q 014125 353 -AADTVNGFSFHPFLPMAASSSGHRRFPVDDFE-------------------------DLHLSGDENCVSVWS 399 (430)
Q Consensus 353 -~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~-------------------------~l~~~~~d~~i~~w~ 399 (430)
+...|.+++|+|++++|++++.|+.+++||.. .|++++.|+.|++|+
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 33479999999999999999999999998542 267777778888775
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-41 Score=301.68 Aligned_cols=305 Identities=17% Similarity=0.227 Sum_probs=249.7
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.|.+.|.+++|+|||++++++..++.+.+|.... .........|...|.+++| +|+
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~-------~~~ 62 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-----------------HARQINTLNHGEVVCAVTI-------SNP 62 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS-----------------EEEEEEEECCSSCCCEEEE-------CSS
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCC-----------------ccccceeccCCCceEEEEE-------ecC
Confidence 3566799999999999999988877766664432 1122234568889999999 778
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
+++|++++ ||.|++||+.+++....+.......+...|.+++|+|+++++++ +.|+.|++||+...... ...
T Consensus 63 ~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~ 135 (337)
T 1gxr_A 63 TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------IKA 135 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------EEE
T ss_pred CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc------eee
Confidence 99999999 99999999988764433332221223448999999999998885 58999999999874321 112
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
....|...+.+++|+| ++.++++++.||.|++||+++++....+..|...|.+++|+|++++|++++ .|+.|++||++
T Consensus 136 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~ 213 (337)
T 1gxr_A 136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLR 213 (337)
T ss_dssp EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT
T ss_pred ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECC
Confidence 2356778899999999 677999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
+..... .. .+...+.+++|+|++++|++++.|+.|++||+++++.. .+..|...|.+++|+|++++|++++.|+
T Consensus 214 ~~~~~~-~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 214 EGRQLQ-QH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TTEEEE-EE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEe-ee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCC
Confidence 875432 22 36678999999999999999999999999999988754 5677999999999999999999999999
Q ss_pred eeeecCCCc------------------------cccccCCCcEEEEeec
Q 014125 377 RFPVDDFED------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 377 ~~~vw~~~~------------------------l~~~~~d~~i~~w~~~ 401 (430)
.+++|+... +++++.||.|++|++.
T Consensus 288 ~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 288 LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999995432 7778888999999874
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8e-41 Score=296.27 Aligned_cols=286 Identities=14% Similarity=0.203 Sum_probs=240.1
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+|.+.|++++|+|++++|++++ ||.|++|++.++....... ......+...|.+++| +
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~-------~ 106 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS------------QLDCLNRDNYIRSCKL-------L 106 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE------------EEECSCTTSBEEEEEE-------C
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee------------cccccCCCCcEEEEEE-------c
Confidence 347999999999999999999999 9999999998754321111 1111256789999999 7
Q ss_pred CCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
|++++|++++.||.|++||+.+++ ....+..+.. .+.+++|+|++.++++ +.|+.|++||++...
T Consensus 107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------- 174 (337)
T 1gxr_A 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQT------- 174 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-------
Confidence 789999999999999999999887 3444444443 8999999999999885 589999999997631
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......|...+.+++|+| ++..+++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++
T Consensus 175 -~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~ 250 (337)
T 1gxr_A 175 -LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEV 250 (337)
T ss_dssp -EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred -eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEE
Confidence 2222356788899999999 66799999999999999999998887775 778899999999999999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
||+++.... . ...|...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|+++
T Consensus 251 ~~~~~~~~~--~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 251 LHVNKPDKY--Q---LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp EETTSSCEE--E---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCeE--E---EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEe
Confidence 999987532 2 2568889999999999999999999999999999999887544 488899999999999999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
+.||.+++|+.
T Consensus 325 ~~dg~i~iw~~ 335 (337)
T 1gxr_A 325 SGDKKATVYEV 335 (337)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCeEEEEEE
Confidence 99999999974
No 32
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-41 Score=303.77 Aligned_cols=294 Identities=13% Similarity=0.111 Sum_probs=229.7
Q ss_pred cceeecccCCCceeEEEECcCC-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 51 NQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
...+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.++..... .....|...|.+++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~h~~~v~~~~~-- 126 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF---------------IQGMGPGDAITGMKF-- 126 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE---------------ECCCSTTCBEEEEEE--
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee---------------eecCCcCCceeEEEe--
Confidence 3455788999999999999999 9999999999999999986533211 111247789999999
Q ss_pred ccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 130 HMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
+| ++.+|++++.|+.|++||+.+ .....+..+. .+...|.+++|+|++.+|++ +.|+.|++||++. .
T Consensus 127 -----~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~- 195 (383)
T 3ei3_B 127 -----NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--H- 195 (383)
T ss_dssp -----ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--C-
T ss_pred -----CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--C-
Confidence 55 678999999999999999986 4444444333 22347999999999999995 5899999999942 1
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC----ceeeEEeeccccCeEEEEEcc-CCCEEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----MELLYVLHGQEGGVTHVQFSR-DGNYLYT 282 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 282 (430)
......+|...|.+++|+|++..++++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++++|++
T Consensus 196 ------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 196 ------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp ------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred ------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence 11223568889999999996555999999999999999998 5566666 5899999999999 9999999
Q ss_pred EecCCCeEEEEeCCCCceEEEEeec---ccCC----------ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYR---SSEH----------TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
++ .|+.|++||+++.......... ...+ ...+..++|+|++++ +|+.||.|++||+.+++.+..
T Consensus 269 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 269 TD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp EE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred Ec-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 99 9999999999876543222111 0111 234455677777776 788999999999999999999
Q ss_pred ccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 350 FQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 350 ~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+ |...+..++|+|++++|++++ |+.|++|+.
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 987 456788889999999999996 555555544
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-41 Score=310.50 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=225.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+.+++++|+|+|++|++++.||.|++||+.+......+. ....+....| ++++++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~------------------~~~~~~~~~~-------~~~~~~ 111 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK------------------RADYTAVDTA-------KLQMRR 111 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC------------------SCCEEEEEEE-------CSSSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe------------------cCCceEEEEE-------ecCCCE
Confidence 346689999999999999999999999998654321111 1123444455 678999
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
|++++.||.|++||+.+++....+..+.. .|.+++|+|++.+|++ +.|+.|++||++.... ...+.
T Consensus 112 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------~~~~~ 178 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFNLQREIDQAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------PRTLI 178 (420)
T ss_dssp EEEEETTSCEEEECTTSCEEEEETTSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------CEEEE
T ss_pred EEEEECCCCEEEEeCCCcceeeecccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------ceEEc
Confidence 99999999999999999888777666554 9999999999999885 5899999999987432 22235
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc---c---------------------cCeEEEEEcc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ---E---------------------GGVTHVQFSR 275 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~---~---------------------~~i~~~~~~~ 275 (430)
+|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..| . ..+.+++|+|
T Consensus 179 ~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 179 GHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 7889999999999 6779999999999999999999988888743 3 3444455678
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCCCe-eccccc-
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTGKW-ISGFQA- 352 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~- 352 (430)
++++|++++ .||.|++||+++........ ..|...+.+++|+|++. +|++|+.||.|++||+++++. +..+..
T Consensus 258 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 258 YGKYVIAGH-VSGVITVHNVFSKEQTIQLP---SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp TTEEEEEEE-TTSCEEEEETTTCCEEEEEC---CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred CCCEEEEEc-CCCeEEEEECCCCceeEEcc---cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 999999999 99999999999886544332 46788999999999998 999999999999999998754 677776
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...|.++.| +++++|++++.|+.+++|+.
T Consensus 334 ~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 334 EGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred CCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 5667888855 57889999999999988863
No 34
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=302.77 Aligned_cols=324 Identities=16% Similarity=0.201 Sum_probs=235.3
Q ss_pred ceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
....+.+|.+.|++++|+| ++++||+|+.||.|++||+.++............ .........|...|.+++|
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~--- 107 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC----SIGRDHPDVHRYSVETVQW--- 107 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE----EECTTCTTCCSSCEEEEEE---
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc----cccccccccCCCcEEEEEE---
Confidence 3456788999999999999 9999999999999999999977544332211000 0000011237789999999
Q ss_pred cCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC---cEEE-EEcCCeEEEEEcCCCC
Q 014125 131 MSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIF-AGYNKSVRVFDVHRPG 205 (430)
Q Consensus 131 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~-~~~d~~i~v~d~~~~~ 205 (430)
+| ++.+|++++.||.|++||+.+++....+.... .+.++.|+|.+ .+++ ++.++.|++||++.+.
T Consensus 108 ----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 108 ----YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp ----CTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred ----ccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 55 67799999999999999999998887776432 78899998855 4777 4589999999998642
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-eeEEe---------------eccccCeE
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVL---------------HGQEGGVT 269 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~---------------~~~~~~i~ 269 (430)
. ......|...|.+++|+|++..++++++.||.|++||++++. ....+ ..|...|.
T Consensus 178 ~--------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 178 C--------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp C--------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred e--------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 2 222357888999999999666679999999999999998765 33333 46888999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+++|+|++++|++++ .||.|++||+++........... ......+........+..+++++.|+.|++||+.+++.+.
T Consensus 250 ~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 250 GLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 999999999999999 99999999999875432111110 1111112222223335567777889999999999999999
Q ss_pred ccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc-----------------------cccccCCCcEEEEeec
Q 014125 349 GFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED-----------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 349 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~-----------------------l~~~~~d~~i~~w~~~ 401 (430)
.+.+|...|.+++|+|++++|++++.||.+++|+... +.+.++|+.+++|+..
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999988888885432 3455667777777543
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.3e-41 Score=299.90 Aligned_cols=297 Identities=12% Similarity=0.165 Sum_probs=229.1
Q ss_pred eecccCCCceeEEEECcCCc-eEEEecC---CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 54 RTSSIPNNFLKGIKWSPDGS-SFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~-~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
+.+.+|.+.|++++|+|++. ++++|+. ||.|+|||+.+++. .......|...|.+++|+|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----------------~~~~~~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----------------KLLREIEKAKPIKCGTFGA 75 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----------------EEEEEEEESSCEEEEECTT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----------------cceeeecccCcEEEEEEcC
Confidence 46678999999999999986 4556665 99999999986532 2223446778999999955
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEE------ECCCCcEEEE-EcCCeEEEEEc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVA------FNPTGTKIFA-GYNKSVRVFDV 201 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~-~~d~~i~v~d~ 201 (430)
. ++++.+|++++.||.|++||+.+++ ....+..+.. .|.++. |+|++.+|++ +.|+.|++||+
T Consensus 76 ~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 76 T----SLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-----IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp C----CTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS-----CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred C----CCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc-----ceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 3 2337999999999999999999987 7777776655 888885 5788988885 58999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEE----EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc--
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIA----FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR-- 275 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-- 275 (430)
+........+ ......+...+.+++ |+| ++.++++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 147 ~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 147 RQKDDPVANM---EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp TSCSSCSEEE---CCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred CCCCCcceec---cccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 8754322222 111122244788888 677 677999999999999999999887554 45889999999999
Q ss_pred -CCCEEEEEecCCCeEEEEeCCCCceEE-EEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCC--------
Q 014125 276 -DGNYLYTGGRKDPYILCWDLRKAVQVV-YKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTG-------- 344 (430)
Q Consensus 276 -~~~~l~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~-------- 344 (430)
++.+|++++ .||.|++||+++..... ........|...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 222 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 222 ISMNKLVATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSCCEEEEEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCEEEEEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 999999999 99999999997643211 01112247889999999999998 8999999999999999864
Q ss_pred -----------CeecccccccCCeeEEEEcCCCcEEE-EeeCCceeeec
Q 014125 345 -----------KWISGFQAAADTVNGFSFHPFLPMAA-SSSGHRRFPVD 381 (430)
Q Consensus 345 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~~~vw 381 (430)
+.+..+.+|...|.+++|+|++++|+ +++.|+.+++|
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 34667788999999999999999888 67754433333
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-41 Score=305.60 Aligned_cols=301 Identities=13% Similarity=0.168 Sum_probs=235.1
Q ss_pred eecccCCCceeEEEECcC----CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 54 RTSSIPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
....+|.+.|++++|+|+ ...+++++.++.|++||+.+++....+... ....+...|.+++|+|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY------------VDADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE------------ECSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec------------cccCCCCcEEEEEecc
Confidence 466799999999999984 445666666779999999865432221111 1112567899999966
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcCCCCCc
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~d~~i~v~d~~~~~~~ 207 (430)
.. .+++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|+| ++.+|++ +.|+.|++||++.....
T Consensus 80 ~~---~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 80 DS---NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp CT---TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CC---CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence 31 12277999999999999999999999888876665 999999999 8888885 58999999999764211
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-------------------------
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------------------- 262 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------------------------- 262 (430)
.......+|...|.+++|+| ++.+|++++.||.|++||+++++....+.
T Consensus 152 -----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 152 -----AIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp -----EEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred -----EEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 11111257888999999999 67799999999999999999876544333
Q ss_pred ---ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce----------EEEEeecccCCccceEEEEEcCC--CCEE
Q 014125 263 ---GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ----------VVYKLYRSSEHTNQRILFDIEPS--GRHL 327 (430)
Q Consensus 263 ---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~--~~~l 327 (430)
.|...|.+++|+ +++|++++ .|+.|++||+++... ..........|...|.+++|+|+ +++|
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 388999999998 77999998 999999999987643 11122333567888999999999 9999
Q ss_pred EEEccCCcEEEEEcCCCCeec----ccccc--cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 328 GTGGQDGLVHIYDLQTGKWIS----GFQAA--ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~----~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
++|+.||.|++||+.+++... .+.+| ...|.+++|+|++++|++++.||.|++|+.
T Consensus 303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 999999999999999987544 67777 689999999999999999997665555544
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-40 Score=299.43 Aligned_cols=298 Identities=16% Similarity=0.203 Sum_probs=238.4
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|.++|++++|+|++++|++|+.|+.|++||+.+++. ........|...|.+++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------~~~~~~~~h~~~v~~~~~------- 60 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------VQVHELKEHNGQVTGVDW------- 60 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEE-------
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------EeeeeecCCCCcccEEEE-------
Confidence 3456999999999999999999999999999999876520 011223357789999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+|++++|++++.||.|++||+.+++......... +...|.+++|+|++.+|++ +.|+.|++||++...... .
T Consensus 61 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~ 133 (372)
T 1k8k_C 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----V 133 (372)
T ss_dssp ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE----E
T ss_pred eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec---CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce----e
Confidence 6689999999999999999999887655543321 2338999999999999985 489999999998743211 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc------------------CCceeeEEeeccccCeEEEEEcc
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE------------------DNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~------------------~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
......+|...|.+++|+| ++.+|++++.||.|++||+ ..++.+..+..|...|.+++|+|
T Consensus 134 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 1112256778899999999 6779999999999999995 46778888888999999999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC--CCe-------
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT--GKW------- 346 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~------- 346 (430)
++++|++++ .|+.|++||+++..... .+ ..|...+.+++|+|++.+|++| .|+.|++|++.+ ++.
T Consensus 213 ~~~~l~~~~-~d~~i~i~d~~~~~~~~-~~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 213 NGSRVAWVS-HDSTVCLADADKKMAVA-TL---ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp SSSEEEEEE-TTTEEEEEEGGGTTEEE-EE---ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred CCCEEEEEe-CCCEEEEEECCCCceeE-EE---ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccC
Confidence 999999999 99999999999875442 22 4677899999999999988888 899999999987 421
Q ss_pred -------------------------e------ccc-ccccCCeeEEEEc-CCC---cEEEEeeCCceeeecCCCcccccc
Q 014125 347 -------------------------I------SGF-QAAADTVNGFSFH-PFL---PMAASSSGHRRFPVDDFEDLHLSG 390 (430)
Q Consensus 347 -------------------------~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~d~~~~vw~~~~l~~~~ 390 (430)
. ..+ .+|...|++++|+ +++ .+|++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~----------------- 349 (372)
T 1k8k_C 287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG----------------- 349 (372)
T ss_dssp CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE-----------------
T ss_pred ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEec-----------------
Confidence 0 223 4899999999977 666 8888887
Q ss_pred CCCcEEEEeeccccc
Q 014125 391 DENCVSVWSFLYASM 405 (430)
Q Consensus 391 ~d~~i~~w~~~~~~~ 405 (430)
.||.|++|++...+.
T Consensus 350 ~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 350 MDGGMSIWDVRSLES 364 (372)
T ss_dssp TTSEEEEEEHHHHHH
T ss_pred CCCceEEEEecChhH
Confidence 577888888776443
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-41 Score=306.07 Aligned_cols=285 Identities=16% Similarity=0.248 Sum_probs=237.3
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
|.+.|++++|+|++++|++|+.||.|++||.. +. .......|...|.+++| +|++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~-----------------~~~~~~~~~~~v~~~~~-------~~~~ 161 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GA-----------------LLNVLNFHRAPIVSVKW-------NKDG 161 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-----------------EEEEECCCCSCEEEEEE-------CTTS
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC-----------------eeeeccCCCccEEEEEE-------CCCC
Confidence 68899999999999999999999999999943 21 11233356789999999 7789
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccc----------cccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD----------EITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
.+|++++.||.|++||+.+++....+..+.... ....+.+++|+|++.+++++.++.|++||+.....
T Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-- 239 (425)
T 1r5m_A 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-- 239 (425)
T ss_dssp SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC--
T ss_pred CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce--
Confidence 999999999999999999998888777655410 00118899999998877777999999999987421
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
......|...|.+++|+| ++.+|++++.|+.|++||+++++....+..|...|.+++|+|++ .+++++ .|+
T Consensus 240 ------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~ 310 (425)
T 1r5m_A 240 ------TGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDG 310 (425)
T ss_dssp ------SEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTS
T ss_pred ------eeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCC
Confidence 222356788999999999 66799999999999999999999999999999999999999999 888888 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC--------------------eec
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK--------------------WIS 348 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------~~~ 348 (430)
.|++||+++..... .+ ..|...+.+++|+|++++|++++.||.|++||+.+++ .+.
T Consensus 311 ~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 311 SVRLWSLKQNTLLA-LS---IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp EEEEEETTTTEEEE-EE---ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred cEEEEECCCCcEeE-ec---ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 99999999875332 22 4678899999999999999999999999999999887 888
Q ss_pred ccccccC--CeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 349 GFQAAAD--TVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 349 ~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+..|.. .|.+++|+|++++|++++.||.+++|+.
T Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 387 SYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred hhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8998976 9999999999999999987655555543
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=329.19 Aligned_cols=212 Identities=11% Similarity=0.092 Sum_probs=173.6
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+. .....|...|.+++| +
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~------------------~~~~~~~~~V~~l~f-------s 67 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV------------------VIKLEDRSAIKEMRF-------V 67 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE------------------EEECSSCCCEEEEEE-------E
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE------------------EEEcCCCCCEEEEEE-------c
Confidence 358999999999999999999999999999999864321 122345678999999 6
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
| +++|++++.|++|++||+.+++.+..+... ..|.+++|+|++.++++| .||.|++||++............
T Consensus 68 p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 68 K-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp T-TTEEEEEETTCEEEEEETTTCSEEEEEECS------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred C-CCEEEEEECcCeEEEEECCCCcEEEEEcCC------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 6 669999999999999999999888777522 289999999999999955 89999999998642110000000
Q ss_pred c---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------------------ccCeEEEEE
Q 014125 215 K---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------------EGGVTHVQF 273 (430)
Q Consensus 215 ~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------------~~~i~~~~~ 273 (430)
. ....+|...|.+++|+|++...+++|+.||.| +||+++++.+..+..| ...|++++|
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 0 23467889999999999767799999999999 9999999888877655 467999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
+|+|++|++++ .||.|++||++++...
T Consensus 220 spdg~~lasgs-~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 220 HPNSLHIITIH-EDNSLVFWDANSGHMI 246 (902)
T ss_dssp CTTSSEEEEEE-TTCCEEEEETTTCCEE
T ss_pred cCCCCEEEEEE-CCCeEEEEECCCCcEE
Confidence 99999999999 9999999999887543
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-40 Score=341.73 Aligned_cols=326 Identities=14% Similarity=0.185 Sum_probs=276.8
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++... ....|...|.+++|
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-----------------~~~~h~~~v~~~~~------ 665 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-----------------DIKAHEDEVLCCAF------ 665 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE------
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-----------------EeccCCCCEEEEEE------
Confidence 4678999999999999999999999999999999998764322 22356689999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC--CcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|+ +.++++ +.|+.|++||++.+.
T Consensus 666 -s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~----- 734 (1249)
T 3sfz_A 666 -SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE----- 734 (1249)
T ss_dssp -CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----
T ss_pred -ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----
Confidence 77899999999999999999999999998887765 8999999995 456664 589999999998742
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-------------cccCeEEEEEccCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------------QEGGVTHVQFSRDG 277 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------~~~~i~~~~~~~~~ 277 (430)
......+|...|++++|+| ++.++++++.||.|++||+++++....+.. +...+.+++|+|+|
T Consensus 735 ---~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 735 ---CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 2223357889999999999 677999999999999999998877665532 12368899999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
+.+++++ ++.+.+||+.+........ .+|...+.+++|+|+++++++++.||.|++||+.++..+..+.+|...|
T Consensus 811 ~~l~~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 811 DKIIVAA--KNKVLLFDIHTSGLLAEIH---TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEEE---CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CEEEEEc--CCcEEEEEecCCCceeEEc---CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence 9999887 7899999999886544332 4788999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcEEEEeeCCceeeecCCC-----------------------------------------------------
Q 014125 358 NGFSFHPFLPMAASSSGHRRFPVDDFE----------------------------------------------------- 384 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~~vw~~~----------------------------------------------------- 384 (430)
.+++|+|++++|++++.|+.+++|+..
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 999999999999999999999999632
Q ss_pred ---------ccccccCCCcEEEEeecccccccccCCCCcceeeeeccC
Q 014125 385 ---------DLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEH 423 (430)
Q Consensus 385 ---------~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (430)
.+++++.||.|++|++..+.....+.+|.+ .+.++...
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~-~v~~l~~s 1012 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK-AVRHIQFT 1012 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS-CCCCEEEC
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC-ceEEEEEC
Confidence 367788999999999999988888887766 44444443
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.2e-40 Score=291.37 Aligned_cols=250 Identities=19% Similarity=0.281 Sum_probs=212.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (430)
...+|...|++++| +|++.+|++|+.||+|++||..+++....+..+.. .|.+++|+|++.+++++ .
T Consensus 59 ~l~gH~~~V~~~~~-------s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-----~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 59 TLKGHGNKVLCMDW-------CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-----WVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp EEECCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCEEEECTTSSEEEEEST
T ss_pred EecCCCCeEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-----CEEEEEECCCCCEEEEeeC
Confidence 44568899999999 77899999999999999999999988887776654 88999999999999965 8
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.+++|++........ ........+|...|.+++|+| ++..|++++.|++|++||+++++.+..+.+|...|.+++
T Consensus 127 d~~i~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENM--AAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp TSEEEEEECCCCTTCCS--GGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEEeccccccc--cccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 99999999875322111 112223356888999999999 667899999999999999999999999999999999999
Q ss_pred Ecc--CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 273 FSR--DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 273 ~~~--~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
|+| ++.+|++++ .||.|++||++++.... .+ ..|...|.+++|+|++.+|++|+.|+.|++||+++++.+..+
T Consensus 204 ~~~~~~g~~l~sgs-~Dg~v~~wd~~~~~~~~-~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 204 LAPSETGNTFVSGG-CDKKAMVWDMRSGQCVQ-AF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp ECCCSSCCEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEeCCCCCEEEEEe-CCCeEEEEECCCCcEEE-Ee---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 987 568999999 99999999999875432 22 578899999999999999999999999999999988776665
Q ss_pred ccc--cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 351 QAA--ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 351 ~~~--~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+ ...+.+++|+|++.+|++++.|+.+++||.
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 533 347899999999999999998888888854
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-40 Score=301.79 Aligned_cols=298 Identities=12% Similarity=0.127 Sum_probs=231.8
Q ss_pred cccCCCceeEEEECcCCc-eEEEecCCCeEEEEeC----CCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 56 SSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSL----PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
...|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++............. ..........|...|.+++|
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~--- 116 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-PFALSASSGKTTNQVTCLAW--- 116 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-CCCCC------CBCEEEEEE---
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-cccccccccCCCCceEEEEE---
Confidence 345668999999999999 9999999999999999 76652111000000000 00000011235679999999
Q ss_pred cCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 131 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++.+|++++.||.|++|| .+++....+..+.. .|.+++|+|++.+|+ ++.|+.|++||+......
T Consensus 117 ----s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-- 184 (425)
T 1r5m_A 117 ----SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRA-----PIVSVKWNKDGTHIISMDVENVTILWNVISGTVM-- 184 (425)
T ss_dssp ----CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE--
T ss_pred ----cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc-----cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE--
Confidence 77899999999999999999 66777777776654 899999999999888 458999999999764211
Q ss_pred ccccccCCCCCCCcc---------------eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 210 KYSTLKGNKEGQAGI---------------MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
.. ...+... +.+++|+| + ..+++++.+|.|++||+++++.+..+..|...|.+++|+
T Consensus 185 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 185 --QH----FELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp --EE----ECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred --EE----eeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 11 1122222 88899998 4 368899999999999999999998999999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
|++++|++++ .|+.|++||+++..... .+ ..|...+.+++|+|++ ++++++.||.|++||+.+++.+..+..|.
T Consensus 257 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 257 DTNKLLLSAS-DDGTLRIWHGGNGNSQN-CF---YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp TTTTEEEEEE-TTSCEEEECSSSBSCSE-EE---CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred CCCCEEEEEc-CCCEEEEEECCCCccce-Ee---cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 9999999999 99999999998865432 22 4688899999999999 99999999999999999999999999999
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..|.+++|+|++++|++++.|+.+++|+.
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 99999999999999999986655555543
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-40 Score=286.27 Aligned_cols=291 Identities=16% Similarity=0.185 Sum_probs=236.1
Q ss_pred ecceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
++..+.+.+|.+.|++++| |++++|++|+.||.|++||+.++.. ......|...|.+++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-----------------~~~~~~~~~~v~~~~~-- 67 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-----------------GTVVYTGQGFLNSVCY-- 67 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------EEEEEECSSCEEEEEE--
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------EEEeecCCccEEEEEE--
Confidence 3456788999999999999 9999999999999999999875422 2233456789999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEeccCC---ceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCC
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPG 205 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 205 (430)
+|++.+|++++.||.|++|++... +....+..+.. .|.+++| ++.+++ ++.|+.|++||..
T Consensus 68 -----~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~--~~~~l~~~~~d~~i~~~d~~--- 132 (313)
T 3odt_A 68 -----DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG-----NVCSLSF--QDGVVISGSWDKTAKVWKEG--- 132 (313)
T ss_dssp -----ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS-----CEEEEEE--ETTEEEEEETTSEEEEEETT---
T ss_pred -----CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc-----CEEEEEe--cCCEEEEEeCCCCEEEEcCC---
Confidence 668999999999999999998765 34455554443 8999999 455666 5699999999921
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEEEEEe
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 284 (430)
........|...+.++.|.|.++..+++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++
T Consensus 133 -------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 133 -------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp -------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred -------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence 122223567888999999986778999999999999999 4455666666 889999999999998 88888
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 364 (430)
.||.|++||+++..... .+ ..|...+.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|
T Consensus 203 -~dg~i~i~d~~~~~~~~-~~---~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 203 -NDGLIKLVDMHTGDVLR-TY---EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp -TTSEEEEEETTTCCEEE-EE---ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred -CCCeEEEEECCchhhhh-hh---hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence 99999999999875432 22 4688999999999999 688999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 365 FLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 365 ~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+++++ +++ .|+.|++|++..++.....
T Consensus 277 ~~~~~-~~~-----------------~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 277 NGDII-VGS-----------------SDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp TSCEE-EEE-----------------TTSCEEEEESCGGGCCC--
T ss_pred CCCEE-EEe-----------------CCCcEEEEeCCCCceeehh
Confidence 99844 555 4788888888877665443
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-41 Score=305.35 Aligned_cols=298 Identities=14% Similarity=0.226 Sum_probs=233.4
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..|...|++++|+|++++|++|+.||.|++|++.+.... .........|...|.+++| +|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~-------~~ 123 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-------------INSMARFSNHSSSVKTVKF-------NA 123 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC-------------CCEEEECCCSSSCCCEEEE-------CS
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc-------------ccchhhccCCccceEEEEE-------cC
Confidence 368899999999999999999999999999999862110 1122233457789999999 66
Q ss_pred C-CceEEEEeCCCcEEEEeccCCc------eeeeeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcCCCCCc
Q 014125 137 T-SCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 137 ~-~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~v~d~~~~~~~ 207 (430)
+ +.+|++++.||.|++||+.+++ ....+. ....+...|.+++|+|+ +.+++++ .|+.|++||++.....
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 6 8899999999999999999876 322221 11234448999999999 6777755 8999999999874221
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCCc-eeeEEee-ccccCeEEEEEcc-CCCEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLYVLH-GQEGGVTHVQFSR-DGNYLY 281 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~ 281 (430)
. .. .......+|...+.+++|+|++..++++++.|+ .|++||++++ .....+. +|...|.+++|+| ++++|+
T Consensus 202 ~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 279 (416)
T 2pm9_A 202 I-HL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279 (416)
T ss_dssp E-EE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred e-EE-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE
Confidence 1 11 111112334788999999997778999999999 9999999986 6677777 8999999999999 899999
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeeccccc--------
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQA-------- 352 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------- 352 (430)
+++ .|+.|++||+++..... .+ ..|...|.+++|+|++ .+|++++.||.|++||+.+++.......
T Consensus 280 s~~-~dg~v~~wd~~~~~~~~-~~---~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 280 SSG-RDNTVLLWNPESAEQLS-QF---PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp EEE-SSSEEEEECSSSCCEEE-EE---ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred EEe-CCCCEEEeeCCCCccce-ee---cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 999 99999999999875432 22 4688899999999999 8999999999999999987764433211
Q ss_pred ---------------------------ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 ---------------------------AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ---------------------------~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|..++.+++|+|+|++|++++.|+.|+||+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 5667889999999999999987666666654
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-40 Score=340.32 Aligned_cols=334 Identities=18% Similarity=0.212 Sum_probs=275.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++... ....|...|.+++|+|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-----------------~~~~~~~~v~~~~~~~-- 709 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH-----------------TYDEHSEQVNCCHFTN-- 709 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------EEECCSSCEEEEEECS--
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE-----------------EEcCCCCcEEEEEEec--
Confidence 345778999999999999999999999999999999998764322 2335668999999955
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
..++.++++|+.||.|++||+.+++....+..+.. .|.+++|+|++.++++ +.||.|++||+.........
T Consensus 710 ---~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 710 ---KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-----SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp ---SSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-----CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred ---CCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-----CEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence 23567899999999999999999998888877665 8999999999999985 58999999998753211000
Q ss_pred c-----------------------------------------------ccccCCCCCCCcceEEEEEcCCCCceEEEecC
Q 014125 211 Y-----------------------------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243 (430)
Q Consensus 211 ~-----------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 243 (430)
. ........+|...+.+++|+| ++.++++++.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~ 860 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALS 860 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeC
Confidence 0 000001126778899999999 6779999999
Q ss_pred CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce-------------------EEE-
Q 014125 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-------------------VVY- 303 (430)
Q Consensus 244 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-------------------~~~- 303 (430)
+|.|++||+.++..+..+.+|...|.+++|+|++++|++++ .||.|++||+.+... ...
T Consensus 861 dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1249)
T 3sfz_A 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939 (1249)
T ss_dssp SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEE
Confidence 99999999999999999999999999999999999999999 999999999753100 000
Q ss_pred --------Eeec-----ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEE
Q 014125 304 --------KLYR-----SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 304 --------~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 370 (430)
.... .......+.+++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1019 (1249)
T 3sfz_A 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI 1019 (1249)
T ss_dssp EESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE
T ss_pred ecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE
Confidence 0000 011345789999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCceeeecCCCc-----------------------cccccCCCcEEEEeecccccccccCCCCc
Q 014125 371 SSSGHRRFPVDDFED-----------------------LHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 371 s~~~d~~~~vw~~~~-----------------------l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
+++.|+.+++|+... +++++.|+.|++|++..++....+.+|.+
T Consensus 1020 s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 1086 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086 (1249)
T ss_dssp EECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS
T ss_pred EEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC
Confidence 999999999996532 67889999999999999988888877765
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-40 Score=294.91 Aligned_cols=302 Identities=10% Similarity=0.031 Sum_probs=214.3
Q ss_pred CceeEEEECcCCceEEEecCCC-------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC-
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDK-------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS- 132 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg-------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 132 (430)
-+|++++|+|||++|++||.|. .|++|++............ .........+...|.++++.+...
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------~~~~~~l~~~~~~v~s~~~~~~~~~ 87 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------ILSEFALEDNDDSPTAIDASKGIIL 87 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------EEEEEECCTTSCCCCEEEEETTEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------eeeEEEccCCCCceEEEEeCCCEEE
Confidence 4799999999999999997643 5999998765432111100 000011223455677776633211
Q ss_pred -ccCCCCceEEEEeCCCcEEEEeccCCceeee----eecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCC
Q 014125 133 -ASDPTSCVFASTTRDHPIHLWDATTGLLRCT----YRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRP 204 (430)
Q Consensus 133 -~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~v~d~~~~ 204 (430)
..+.++..|++++.|+.+++|++........ ............+.+++|+|||++++ ++ .|+.|++||+.+.
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 1122333444556788899999876543221 12222222333578999999999887 33 6899999999764
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEE
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
... .. ..|...|.+++|+| ++.++++++. +.+.+|+..+++... ....|...|.+++|+|+++++++
T Consensus 168 ~~~----~~-----~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 168 TEK----FE-----IETRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEE----EE-----EECSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred cEE----EE-----eCCCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 211 11 13556799999999 6678888875 456667666665543 34568889999999999999999
Q ss_pred EecCCC----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCCe
Q 014125 283 GGRKDP----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADTV 357 (430)
Q Consensus 283 ~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v 357 (430)
++ .|+ .+++|++...............|...|++++|+|+|++||+|+.|+.|+|||+.+++++.. +.+|...|
T Consensus 237 ~s-~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 237 AS-LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EE-ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred Ee-cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 98 666 6889998877554444444567889999999999999999999999999999999999887 47899999
Q ss_pred eEEEEcCCCcEEEEeeCCceeeec
Q 014125 358 NGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++++|+|+|++||+++.|++|+||
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999999999999854433333
No 47
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-40 Score=295.37 Aligned_cols=300 Identities=12% Similarity=0.149 Sum_probs=207.6
Q ss_pred eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEE
Q 014125 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (430)
Q Consensus 64 ~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 143 (430)
..+.+.+++.++.+ +.+.....|+++.. ....|...|.+++| +|||++|++
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~---------------------~p~~H~~~V~~v~f-------SpDG~~las 59 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVT---------------------APACMEVQIGAVRY-------RRDGALLLA 59 (357)
T ss_dssp -----------------------------------------------------CCCSEEEEEEE-------CSSSCEEEE
T ss_pred cCCCCCccceEEec-CCCccccccCCCCC---------------------CcccccCCEEEEEE-------CCCCCEEEE
Confidence 34566666655444 44567889987632 11246789999999 889999999
Q ss_pred EeC------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 144 TTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 144 ~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
++. |+.|++|+..++.....+... ...+...|.+++|+|++.+++++.|+.|++||+.++.... .....
T Consensus 60 ~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~----~~~~~ 134 (357)
T 4g56_B 60 ASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLL----VNKFA 134 (357)
T ss_dssp EECSSSSSCCEEEEEESSCC---CGGGCSE-EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------C----CCCEE
T ss_pred EcCCCCccccCeEEEEECCCCCcceeEecc-cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeE----EEeec
Confidence 998 778999998877544332211 1123347999999999998888999999999998753221 11112
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~ 296 (430)
..+|...|++++|+| ++.+|++|+.|++|++||+++++.+..+.+|...|++++|+|++. .+++++ .|+.|++||++
T Consensus 135 ~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~-~dg~v~~wd~~ 212 (357)
T 4g56_B 135 KYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG-EDGRILLWDTR 212 (357)
T ss_dssp ECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE-TTSCEEECCTT
T ss_pred cCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec-cCCceEEEECC
Confidence 357889999999999 677999999999999999999999999999999999999999886 677777 99999999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC-cEEEEeeC
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL-PMAASSSG 374 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~ 374 (430)
++.... ......+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++.
T Consensus 213 ~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 213 KPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp SSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 875432 22234567789999999974 689999999999999999999999999999999999999987 57899998
Q ss_pred CceeeecCCCc---cccccCCCcEEEEeec
Q 014125 375 HRRFPVDDFED---LHLSGDENCVSVWSFL 401 (430)
Q Consensus 375 d~~~~vw~~~~---l~~~~~d~~i~~w~~~ 401 (430)
|+.|+|||.+. +...++.+.|.--.+.
T Consensus 291 D~~i~iwd~~~~~~~~~~~H~~~V~~vafs 320 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDLSHRDFVTGVAWS 320 (357)
T ss_dssp TSCEEEECTTSCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCCCcEeEECCCCCCEEEEEEe
Confidence 77777776543 2233445554443443
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=305.26 Aligned_cols=300 Identities=16% Similarity=0.180 Sum_probs=230.1
Q ss_pred ceeec-ccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 52 QFRTS-SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 52 ~~~~~-~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
....+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+... ...........|...|.+++|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~------------~~~~~~~~~~~h~~~v~~~~~-- 119 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV------------GEVYSSSLTYDCSSTVTQITM-- 119 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT------------TCCCSCSEEEECSSCEEEEEE--
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc------------CcccceeeeccCCCCEEEEEE--
Confidence 34455 89999999999999 999999999999999999864110 001112234467889999999
Q ss_pred ccCccCCCCceEEEEeCCCcEEEEecc---CCceeeeeecccc-----cc--cccceEEEE--ECCCCcEEEE-EcCCeE
Q 014125 130 HMSASDPTSCVFASTTRDHPIHLWDAT---TGLLRCTYRAYDA-----VD--EITAAFSVA--FNPTGTKIFA-GYNKSV 196 (430)
Q Consensus 130 ~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~-----~~--~~~~v~~~~--~~~~~~~l~~-~~d~~i 196 (430)
+|++.+|++++.||.|++||+. +++.......+.. .. +...+.++. +++++.++++ +.|+.|
T Consensus 120 -----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 194 (437)
T 3gre_A 120 -----IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV 194 (437)
T ss_dssp -----CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred -----eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeE
Confidence 6789999999999999999995 5555444332210 00 223566666 6688988885 589999
Q ss_pred EEEEcCCCCCcccccccccCCCCC--CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEE
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEG--QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQF 273 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~ 273 (430)
++||++.... ...+.. |...|++++|+| ++.+|++|+.||.|++||+++++.+..+. .|...|.+++|
T Consensus 195 ~iwd~~~~~~--------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 195 IIFDIRTLER--------LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTTCCE--------EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCCee--------eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 9999987422 111223 678899999999 67899999999999999999999988876 67789999966
Q ss_pred c----cCCCEEEEEecCCCeEEEEeCCCCceEEEEeec--------------------cc--CCccceEEEEEcCCCCEE
Q 014125 274 S----RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR--------------------SS--EHTNQRILFDIEPSGRHL 327 (430)
Q Consensus 274 ~----~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~--------------------~~--~~~~~v~~~~~~~~~~~l 327 (430)
+ |++.+|++++ .||.|++||++++......... .. .|...|++++|+ ++++|
T Consensus 266 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l 343 (437)
T 3gre_A 266 CQFYGKNSVIVVGGS-SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKIL 343 (437)
T ss_dssp CTTTCTTEEEEEEES-TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEE
T ss_pred ccccCCCccEEEEEc-CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEE
Confidence 5 4677899888 9999999999987543322100 01 267789999999 77999
Q ss_pred EEEccCCcEEEEEcCCCCeeccccc-------------------------------------ccCCeeEEEEcCC--CcE
Q 014125 328 GTGGQDGLVHIYDLQTGKWISGFQA-------------------------------------AADTVNGFSFHPF--LPM 368 (430)
Q Consensus 328 ~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~--~~~ 368 (430)
++|+.||.|++||+.+++.+..+.+ |.+.|++++|+++ +.+
T Consensus 344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~ 423 (437)
T 3gre_A 344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL 423 (437)
T ss_dssp EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence 9999999999999999887776665 7888999999987 778
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++++.||.|+||
T Consensus 424 l~s~~~dG~I~iw 436 (437)
T 3gre_A 424 LVACDNSGLIGIF 436 (437)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEcCCceEEEe
Confidence 8888876666665
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-41 Score=304.23 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=193.4
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+..|.++|++++|+|+|++||+|+.||.|+|||+.++.. ........|...|.+++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~------- 63 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDW------- 63 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEE-------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEE-------
Confidence 3445778999999999999999999999999999986510 111123346789999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++++.||.|++||+.+++ ....+..+.. .|.+++|+|++++|++ +.|+.|++||++..... .
T Consensus 64 s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~- 136 (377)
T 3dwl_C 64 APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQENDW-W- 136 (377)
T ss_dssp CTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEESSSCEEECCC-----C-C-
T ss_pred eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-e-
Confidence 6789999999999999999999877 3444444443 8999999999998885 58999999999874320 0
Q ss_pred cccccCCCCC-CCcceEEEEEcCCCCceEEEecCCCeEEEEEcC------------------CceeeEEeeccccCeEEE
Q 014125 211 YSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------NMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 211 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~------------------~~~~~~~~~~~~~~i~~~ 271 (430)
....... |...|.+++|+| ++.+|++++.|+.|++||++ .++.+..+ .|...|.++
T Consensus 137 ---~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 137 ---VSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp ---CCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred ---eeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 1112233 888999999999 67799999999999999985 35566666 899999999
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
+|+|++++|++++ .||.|++||+++.............|...|.+++|+|++++|++|+.++.+ +|+..
T Consensus 212 ~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999 999999999998866433344446788999999999999999999877655 66665
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-39 Score=293.20 Aligned_cols=295 Identities=13% Similarity=0.183 Sum_probs=232.7
Q ss_pred cccCCCce--eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 56 SSIPNNFL--KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 56 ~~~h~~~v--~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+|.+.+ .+++|++ ..+++++.||.|++|++.+++.. ......|...|.+++|
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~~v~~v~~------ 142 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS----------------ALAETDESTYVASVKW------ 142 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE----------------EEEECCTTCCEEEEEE------
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe----------------EeeecCCCCCEEEEEE------
Confidence 34676654 4456654 66888999999999999876432 2233346789999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|+ +.+++ ++.|+.|++||++.....
T Consensus 143 -s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~----- 209 (401)
T 4aez_A 143 -SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA-----RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ----- 209 (401)
T ss_dssp -CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE-----
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC-----ceEEEEEC--CCEEEEEcCCCCEEEEecccCcce-----
Confidence 77899999999999999999999998888876665 89999994 45676 559999999999854322
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCCeE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDPYI 290 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i 290 (430)
.....+|...|.+++|+| ++.+|++|+.|+.|++||+++++....+..|...|.+++|+|++..++++++ .|+.|
T Consensus 210 --~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 210 --IGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp --EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred --eeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 222357888999999999 7789999999999999999999999999999999999999998876666542 59999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEE--EccCCcEEEEEcCCCCeec--ccccccCCeeEEEEcCCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGT--GGQDGLVHIYDLQTGKWIS--GFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~ 366 (430)
++||++++.... .+ .+...+.+++|+|++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+|++
T Consensus 287 ~i~d~~~~~~~~-~~----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 287 HFWNAATGARVN-TV----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361 (401)
T ss_dssp EEEETTTCCEEE-EE----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred EEEECCCCCEEE-EE----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence 999999875443 22 35678999999999999998 5589999999999866544 467899999999999999
Q ss_pred cEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 367 PMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 367 ~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
++|++++ .|+.|++|++..++.+.....+
T Consensus 362 ~~l~s~~-----------------~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 362 RILSTAA-----------------SDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp SEEEEEC-----------------TTSEEEEEECCC----------
T ss_pred CEEEEEe-----------------CCCcEEEEECCCCccccccccc
Confidence 9999987 4678888888877766555443
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-39 Score=292.77 Aligned_cols=269 Identities=18% Similarity=0.221 Sum_probs=218.9
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc-------------ccccceEEEEEC
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-------------DEITAAFSVAFN 182 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~ 182 (430)
..|...|.+++| +|+|++|++|+ ++.+++|++.+++.+..+..+... .+...|.+++|+
T Consensus 61 ~~h~~~V~~v~f-------spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 61 LDHTSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EECSSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred cCCCCEEEEEEE-------CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 357789999999 77999999986 688999999999887776544311 111248899999
Q ss_pred CCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe
Q 014125 183 PTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261 (430)
Q Consensus 183 ~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 261 (430)
|++++|++ +.|+.|++||+... .....+.+|...|.+++|+| ++..|++++.|++|++||+++++....+
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 99999995 58999999999763 22223468889999999999 6679999999999999999999888777
Q ss_pred eccccCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEe---ecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 262 HGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKL---YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 262 ~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
. +...+.+++|+| ++++|++++ .|+.|++||++++....... ....+|...|.+++|+|+|++|++|+.||.|+
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 6 567899999999 899999999 99999999999875432211 11246888999999999999999999999999
Q ss_pred EEEcCCC------------CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC---------------------
Q 014125 338 IYDLQTG------------KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE--------------------- 384 (430)
Q Consensus 338 vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~--------------------- 384 (430)
+||+++. .....+.+|...|.+++|+|++.+|++++.|+.+++||..
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9999763 3455677899999999999999999999999999999542
Q ss_pred ----------ccccccCCCcEEEEeeccc
Q 014125 385 ----------DLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 385 ----------~l~~~~~d~~i~~w~~~~~ 403 (430)
.|++++.|++|++|++...
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 2678889999999998643
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-39 Score=280.40 Aligned_cols=257 Identities=18% Similarity=0.243 Sum_probs=205.1
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.... .........|..+|++++|.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------~~~~~~l~gH~~~V~~v~~s~---- 63 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH---- 63 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------BCCCEEECCCSSCEEEEEECC----
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------cEEEEEEccccCCeEEEEecC----
Confidence 4678999999999999999999999999999999986431 111223456788999999943
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
..++.+|++|+.||+|++||+.+++ .+..+..+.. .|.+++|+|+ +.+|+ ++.|+.|++||++......
T Consensus 64 -~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 64 -PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp -GGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred -CCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-----ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence 1247899999999999999998874 3344444443 8999999998 77887 5599999999997642211
Q ss_pred cccccccCCCCCCCcceEEEEEcCCC------------CceEEEecCCCeEEEEEcCCce----eeEEeeccccCeEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTH------------TGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~ 272 (430)
.....+|...|.+++|+|+. +.+|++|+.|++|++||+++++ ....+.+|...|.+++
T Consensus 138 ------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 138 ------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp ------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred ------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 11235788899999999952 4689999999999999998765 5667889999999999
Q ss_pred EccCC---CEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 273 FSRDG---NYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 273 ~~~~~---~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
|+|++ .+|++++ .|++|++||++..... .........+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 212 ~sp~~~~~~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 212 WSPTVLLRSYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCCceEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99985 7888988 9999999999874321 11222224677889999999999999999999999999986
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-39 Score=281.65 Aligned_cols=245 Identities=17% Similarity=0.288 Sum_probs=207.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| +|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|++++|++ +.
T Consensus 18 ~~~gh~~~v~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 18 TLAGHTKAVSSVKF-------SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp EECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEET
T ss_pred EEcccCCcEEEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCC-----ceEEEEEcCCCCEEEEECC
Confidence 34567889999999 77899999999999999999999998888876665 8999999999999995 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||++... ......+|...|.+++|+| ++.+|++|+.|+.|++||+++++.+..+..|..+|.+++
T Consensus 86 d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 86 DKTLKIWDVSSGK--------CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp TSEEEEEETTTCC--------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEECCCCc--------EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 9999999998642 1222357888999999999 677999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|+|++++|++++ .||.|++||+++........ ..+...+..++|+|++++|++++.||.|++||+++++.+..+.+
T Consensus 157 ~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 157 FNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEETTTCCEEEEEC---CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCceeeEEe---ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence 999999999999 99999999999875443222 34667899999999999999999999999999999999998888
Q ss_pred ccCCeeE--EEE-cCCCcEEEEeeCCceeeecCC
Q 014125 353 AADTVNG--FSF-HPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ~~~~v~~--~~~-~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...+.. ..+ .+++.+|++++.|+.|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 8765332 233 467888888887777777643
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=299.09 Aligned_cols=301 Identities=16% Similarity=0.235 Sum_probs=220.6
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCC------------Ceeee
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG------------ESVYD 124 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~ 124 (430)
..|.+.|++++|+|+|++||+|+.||.|+||++.++........ ...........|. ..|.+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC------CCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------cceeEecccccccccccccccccccCceEE
Confidence 34688999999999999999999999999999987642110000 0000112233454 77999
Q ss_pred eeeccccCccCCCC--ceEEEEeCCCcEEEEeccCCceeeee---ec--------------------------------c
Q 014125 125 FCWFPHMSASDPTS--CVFASTTRDHPIHLWDATTGLLRCTY---RA--------------------------------Y 167 (430)
Q Consensus 125 ~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~---~~--------------------------------~ 167 (430)
++| +|++ ..|++++.||.|++||+.++...... .. .
T Consensus 99 l~~-------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 99 IRW-------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp EEE-------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred EEE-------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 999 5566 78999999999999999775432110 00 0
Q ss_pred cccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeE
Q 014125 168 DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS 247 (430)
Q Consensus 168 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 247 (430)
....|...|.+++|+|++++|+++.|+.|++||++.................+|...|.+++|+|++..+|++|+.||.|
T Consensus 172 ~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 172 FANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp ECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred eccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 01234458999999999999997799999999998533222211111123467888999999999655899999999999
Q ss_pred EEEEcCCcee----eEEeecccc------------CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 248 AIYREDNMEL----LYVLHGQEG------------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 248 ~~~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
++||+++++. ...+..|.. .|.+++|+|++++|++++ . +.|++||++........+ ..|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~~~~---~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPVETY---QVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCSCCE---ESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccccee---ecc
Confidence 9999998886 677887775 899999999999999998 6 999999998732322222 223
Q ss_pred cc---------------ceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-------------------------
Q 014125 312 TN---------------QRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------------------------- 351 (430)
Q Consensus 312 ~~---------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------- 351 (430)
.. .+..++|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccc
Confidence 22 13349999999999999999999999999887643 11
Q ss_pred --------cccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 352 --------AAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 352 --------~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.+...|..++|+|++++||+++.++
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 2345689999999999999998654
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-39 Score=318.37 Aligned_cols=281 Identities=19% Similarity=0.232 Sum_probs=236.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++... .....|..+|.+++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~---- 63 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV-----------------RSIQVTETPVRAGKF---- 63 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE----
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE-----------------EEEecCCCcEEEEEE----
Confidence 34578899999999999999999999999999999999865332 123356689999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.+|++ +.|+.|++||+.....
T Consensus 64 ---s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---- 131 (814)
T 3mkq_A 64 ---IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---- 131 (814)
T ss_dssp ---EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----
T ss_pred ---eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----
Confidence 66899999999999999999999999888877665 8999999999998885 5899999999976321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEEcc--CCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSR--DGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~~d 287 (430)
......+|...|.+++|+|.++..+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ .|
T Consensus 132 ---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d 207 (814)
T 3mkq_A 132 ---LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DD 207 (814)
T ss_dssp ---EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TT
T ss_pred ---EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CC
Confidence 2223357788999999999667799999999999999999888777776554 8899999999 999999999 99
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
|.|++||++++... ..+ ..|...+.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus 208 g~i~~~d~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 208 LTIKIWDYQTKSCV-ATL---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp SEEEEEETTTTEEE-EEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred CEEEEEECCCCcEE-EEE---cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence 99999999887533 222 46888999999999999999999999999999999888888887777888888888776
Q ss_pred --EEEEee
Q 014125 368 --MAASSS 373 (430)
Q Consensus 368 --~l~s~~ 373 (430)
++++++
T Consensus 284 ~~~~~~~~ 291 (814)
T 3mkq_A 284 KNYIASGF 291 (814)
T ss_dssp GGEEEEEE
T ss_pred ceEEEEEe
Confidence 344444
No 56
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-39 Score=291.86 Aligned_cols=252 Identities=19% Similarity=0.341 Sum_probs=211.8
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (430)
..+|...|++++| +|++++|++|+.||+|++||+.+++....+..+.. .|.+++|+|++++|+++ .|
T Consensus 62 l~gH~~~V~~~~~-------sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 62 LQGHSGKVYSLDW-------TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-----WVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp ECCCSSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT-----TCCCCEECTTSSEEEECCSS
T ss_pred ccccccEEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC-----CEEEEEECCCCCEEEEeeCC
Confidence 3457789999999 77899999999999999999999998888887765 89999999999999955 89
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-----eccccCe
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-----HGQEGGV 268 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i 268 (430)
+.+++|++........ .......+.+|...+.++.|.|+++..|++|+.|++|++||+++++.+..+ .+|...|
T Consensus 130 ~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 130 SACSIFNLSSQADRDG-NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp SCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CcEEEEECCCCccccC-CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9999999975321111 112333457899999999999977788999999999999999999888776 5788999
Q ss_pred EEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCee
Q 014125 269 THVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWI 347 (430)
Q Consensus 269 ~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 347 (430)
.+++|+| ++.+|++++ .|+.|++||++........+ .+|...|.+++|+|++++|++|+.||.|++||+++++.+
T Consensus 209 ~~~~~~~~~~~~l~sgs-~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 209 LSLSINSLNANMFISGS-CDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEEEECSSSCCEEEEEE-TTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred EEEEeecCCCCEEEEEE-CCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 9999987 788999999 99999999998553333233 578999999999999999999999999999999999888
Q ss_pred ccccccc-------CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 348 SGFQAAA-------DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 348 ~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+..+. ..|.+++|+|++++|++++.||.+++||.
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 7765443 24899999999999999997776666654
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-40 Score=305.28 Aligned_cols=278 Identities=10% Similarity=0.097 Sum_probs=201.4
Q ss_pred CCCceeEEEECcCC---------ceEEE-------------------ecCCCeEEEEeCCCCCCcccccccccccccCcc
Q 014125 59 PNNFLKGIKWSPDG---------SSFLT-------------------SSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (430)
Q Consensus 59 h~~~v~~~~~sp~~---------~~l~s-------------------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 110 (430)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++....
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~------------- 198 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV------------- 198 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-------------
Confidence 57889999999986 67766 45788999999876532100
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCcee-----------eeeecccccccccceEEE
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-----------CTYRAYDAVDEITAAFSV 179 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~ 179 (430)
......+|...|.+++|+|.. ..++++.+||+++.||+|++||+.++... ..+..+ ...|.++
T Consensus 199 ~~~~l~~~~~~V~~v~wsp~~-~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-----~~~v~sv 272 (524)
T 2j04_B 199 KVQTIVHSFGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA-----DSLITTF 272 (524)
T ss_dssp EEEEEEECCCSEEEEEECSSC-CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT-----TTCEEEE
T ss_pred EEEEEEecCCcEEEEEECCCC-CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC-----CCCEEEE
Confidence 011233456789999997742 12345789999999999999999876432 123333 3489999
Q ss_pred EECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE--EEcCCCCceEEEecCCCeEEEEEcCCce
Q 014125 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI--AFSPTHTGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 180 ~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
+|++++ .|+ ++.||+|++||++.+... .....+|...|.++ +|+|++..+|++|+.|++|++||+++++
T Consensus 273 ~~s~~~-~lasgs~DgtV~lWD~~~~~~~-------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 273 DFLSPT-TVVCGFKNGFVAEFDLTDPEVP-------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EESSSS-EEEEEETTSEEEEEETTBCSSC-------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EecCCC-eEEEEeCCCEEEEEECCCCCCc-------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 999876 555 569999999999864221 11236788999999 5677333799999999999999999988
Q ss_pred eeEEeecccc--CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 257 LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 257 ~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
....+.+|.. .|.+++|+|+++.+++++ .|++|++||+++..... .+ .+|...|++++|+|+|++|++|+.||
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~~-~l---~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAVH-PL---VSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCCE-EE---EECSSCEEEEECCSSCCBCEEEETTT
T ss_pred cccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccce-ee---ecCCCceEEEEeCCCCCeEEEEECCC
Confidence 7777776653 588999999999999988 89999999999875432 22 46899999999999999999999999
Q ss_pred cEEEEEcCCCCeecccccc-----cCCeeEEEEcCCCcEE
Q 014125 335 LVHIYDLQTGKWISGFQAA-----ADTVNGFSFHPFLPMA 369 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l 369 (430)
+|++||+..+ .+..++.+ ...|.+++|+|++..+
T Consensus 420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999997643 22221111 1135566667766643
No 58
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-40 Score=324.13 Aligned_cols=339 Identities=9% Similarity=0.046 Sum_probs=236.2
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccc-eeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
|.+.|++++|+|++++|++|+.||.|++||+.++... ....... ... .....|..+|.+++|+|. +
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~------~~~~~~~~~h~~~V~sl~~sp~------~ 163 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNL------QKSSFFPAARLSPIVSIQWNPR------D 163 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCH------HHHHTCSSSCCCCCCEEEEETT------E
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccc------cccccccccCCCCeEEEEEccC------C
Confidence 6688999999999999999999999999999876431 0000000 000 112346789999999542 3
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccc-------------cccccceEEEEECCCCcEEEE-EcCCeEEEEEcCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-------------VDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHR 203 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~ 203 (430)
+..|++|+.||.| +||+.+++....+..+.. ..+...|.+++|+|++.+|++ +.|+.|++||+++
T Consensus 164 ~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 164 IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 5789999999999 999999988887765410 112347999999999999995 5899999999977
Q ss_pred CCCccc-ccccccCCC------C---CCCcceEEEEEc----CCCCceEEEe----------------------------
Q 014125 204 PGRDFE-KYSTLKGNK------E---GQAGIMSAIAFS----PTHTGMLAIG---------------------------- 241 (430)
Q Consensus 204 ~~~~~~-~~~~~~~~~------~---~~~~~v~~~~~~----~~~~~~l~~~---------------------------- 241 (430)
+..... .+....... . .+...|.+++|+ |+++.++++|
T Consensus 243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 422110 000000000 0 123456666663 2222334444
Q ss_pred ------------------------------------------------cCCCeEEEEEcCCceeeEE-------------
Q 014125 242 ------------------------------------------------SYSQTSAIYREDNMELLYV------------- 260 (430)
Q Consensus 242 ------------------------------------------------~~dg~v~~~d~~~~~~~~~------------- 260 (430)
+.||.|++||+.++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 3345566666544422111
Q ss_pred ----------------------------eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE---EEEeec--
Q 014125 261 ----------------------------LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV---VYKLYR-- 307 (430)
Q Consensus 261 ----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~---~~~~~~-- 307 (430)
+.+|...+.+++|+|++++|++++ .|++|++||+.++... ......
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs-~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH-SNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE-TTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec-CCCcEEEEECCCccccCCceEEeechh
Confidence 122333344456678999999999 9999999999876311 001000
Q ss_pred --ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC----------------------------------------
Q 014125 308 --SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK---------------------------------------- 345 (430)
Q Consensus 308 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------------------------------- 345 (430)
..+|...|.+++|+|+|++||+|+.||+|+|||+.+++
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 12688899999999999999999999999999998763
Q ss_pred -----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC------------------------------------
Q 014125 346 -----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE------------------------------------ 384 (430)
Q Consensus 346 -----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~------------------------------------ 384 (430)
++..+.+|.+.|++++|+|+| +||+|+.|+.|++||.+
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~ 640 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY 640 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS
T ss_pred CCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC
Confidence 356678899999999999999 99999999999999642
Q ss_pred ---ccccccCCCcEEEEee---cccccccccCCCC
Q 014125 385 ---DLHLSGDENCVSVWSF---LYASMMENADGIN 413 (430)
Q Consensus 385 ---~l~~~~~d~~i~~w~~---~~~~~~~~~~~~~ 413 (430)
.|++++.|++|++|++ ..++....+.+|.
T Consensus 641 ~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 641 SSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp EEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred cceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 2556678999999999 6666666666553
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.7e-39 Score=306.20 Aligned_cols=306 Identities=15% Similarity=0.181 Sum_probs=253.5
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCe-eeeeeeccccCccC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES-VYDFCWFPHMSASD 135 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~ 135 (430)
..|.+.|++++|+|+|++||+++ ++.|+||++.++... .........|... |.+++| +
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~-------------~~~~~~~~~h~~~~v~~~~~-------s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK-------------VPPVVQFTGHGSSVVTTVKF-------S 73 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS-------------SCSEEEECTTTTSCEEEEEE-------C
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc-------------cccceEEecCCCceEEEEEE-------C
Confidence 46889999999999999999998 789999999865100 0122234456778 999999 7
Q ss_pred C--CCceEEEEeCCCcEEEEeccCC--------ceeeeeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEE
Q 014125 136 P--TSCVFASTTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFD 200 (430)
Q Consensus 136 ~--~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~v~d 200 (430)
| ++++|++++.||.|++||+.++ +....+..+.. .|.+++|+|++++++++ .+ +.|++||
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 7 8999999999999999999755 45555554444 89999999999999955 44 5888888
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc---CeEEEEEccC-
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG---GVTHVQFSRD- 276 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~- 276 (430)
... ......+|...|.+++|+|++..++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 149 ~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (615)
T 1pgu_A 149 SGN----------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 218 (615)
T ss_dssp TCC----------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred CCC----------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence 322 12223578889999999996666899999999999999999999999999998 9999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc---
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA--- 353 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--- 353 (430)
+++|++++ .||.|++||++++............|...|.+++|+ ++++|++++.||.|++||+++++.+..+..+
T Consensus 219 ~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 219 GEFVITVG-SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp CCEEEEEE-TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred CCEEEEEe-CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 99999999 999999999998754322111111688999999999 9999999999999999999999998888766
Q ss_pred -cCCeeEEEEcCCCcEEEEeeCCceeeecCCCc---------------------cccccCCCcEEEEeec
Q 014125 354 -ADTVNGFSFHPFLPMAASSSGHRRFPVDDFED---------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 354 -~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~---------------------l~~~~~d~~i~~w~~~ 401 (430)
...+.++.|. ++.++++++.|+.+++|+... +++++.|+.|++|++.
T Consensus 297 ~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 297 LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 3678888886 899999999999999997654 7888999999999987
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.7e-39 Score=306.52 Aligned_cols=315 Identities=13% Similarity=0.150 Sum_probs=257.7
Q ss_pred ceeecccCCCc-eeEEEECc--CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeec
Q 014125 52 QFRTSSIPNNF-LKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (430)
Q Consensus 52 ~~~~~~~h~~~-v~~~~~sp--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (430)
....+.+|.+. |++++|+| ++++||+|+.||.|++||+.++...... ..........|...|.+++|
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~- 124 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV---------EVNVKSEFQVLAGPISDISW- 124 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE---------EEEEEEEEECCSSCEEEEEE-
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccc---------cccccchhhcccccEEEEEE-
Confidence 45578899999 99999999 9999999999999999999643110000 01112233346789999999
Q ss_pred cccCccCCCCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcC
Q 014125 129 PHMSASDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVH 202 (430)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~ 202 (430)
+|++++|++++.+ +.|++|| .++....+..+.. .|.+++|+|++. .++ ++.|+.|++||+.
T Consensus 125 ------s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 125 ------DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-----RINACHLKQSRPMRSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp ------CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-----CEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred ------eCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCc-----cEEEEEECCCCCcEEEEEeCCCcEEEEeCC
Confidence 7789999999988 6888888 5666777666554 899999999997 566 5589999999987
Q ss_pred CCCCcccccccccCCCCCCCc---ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-e---ccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-H---GQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~---~~~~~i~~~~~~~ 275 (430)
.. .....+.+|.. .|.+++|+|+++.+|++++.||.|++||+++++.+..+ . .|...|.+++|+
T Consensus 192 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 192 PF--------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp TB--------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred Cc--------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-
Confidence 62 12222356777 89999999943789999999999999999999999888 5 799999999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++++|++++ .|+.|++||+++.................+.++.|. ++.++++++.||.|++||+.+++.+..+.+|..
T Consensus 263 ~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 340 (615)
T 1pgu_A 263 DSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340 (615)
T ss_dssp SSSEEEEEE-TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSS
T ss_pred CCCEEEEEc-CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC
Confidence 999999999 999999999998754432222112345678888885 889999999999999999999999999999999
Q ss_pred CeeEEEEcCCCcEEEEeeCCceeeecC-------------------CCccccccCCCcEEEEeecccc
Q 014125 356 TVNGFSFHPFLPMAASSSGHRRFPVDD-------------------FEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~d~~~~vw~-------------------~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
.|.+++| |+ |++++.|+.+++|+ ...+++++.|+.|++|++..++
T Consensus 341 ~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 341 GITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp CEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred CEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence 9999999 88 99999999999998 5678999999999999998654
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.4e-40 Score=286.15 Aligned_cols=254 Identities=15% Similarity=0.243 Sum_probs=197.8
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ........|...|++++|.|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------~~~~~l~gH~~~V~~v~~~~----- 67 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------ILIADLRGHEGPVWQVAWAH----- 67 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEECC-----
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------EEEEEEcCCCccEEEEEeCC-----
Confidence 5679999999999999999999999999999999875421 01123446788999999943
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCCccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~~~ 209 (430)
..++++|++|+.|++|++||+.+++ ....+..|.. .|.+++|+|+ +.+|+++ .|+.|++||++....
T Consensus 68 ~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--- 139 (316)
T 3bg1_A 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--- 139 (316)
T ss_dssp GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---
T ss_pred CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---
Confidence 1147899999999999999998874 3444444443 8999999998 7778855 899999999976421
Q ss_pred ccccccCCCCCCCcceEEEEEcCCC----------------CceEEEecCCCeEEEEEcCCc---eeeEEeeccccCeEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTH----------------TGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEGGVTH 270 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~ 270 (430)
........+|...+.+++|+|+. +.+|++|+.|++|++||++.. +....+.+|...|.+
T Consensus 140 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 140 --WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 217 (316)
T ss_dssp --EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred --cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence 11123346788889999999952 368999999999999999754 466778899999999
Q ss_pred EEEccCC----CEEEEEecCCCeEEEEeCCCCce---EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 271 VQFSRDG----NYLYTGGRKDPYILCWDLRKAVQ---VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 271 ~~~~~~~----~~l~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
++|+|++ .+|++++ .|++|++|++++... ....+ ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 218 v~~sp~~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~---~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCS-QDGRVFIWTCDDASSNTWSPKLL---HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECCCCSSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEE---EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEecCCCCCCCceEEEEc-CCCeEEEEEccCccccchhhhhh---hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999986 7899999 999999999976311 11111 3467899999999999999999999999999976
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-38 Score=291.72 Aligned_cols=287 Identities=15% Similarity=0.273 Sum_probs=231.0
Q ss_pred eeecccCCCce-eEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 53 FRTSSIPNNFL-KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 53 ~~~~~~h~~~v-~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
...+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++... ....|...|.+++|
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~-----------------~~~~h~~~V~~l~~---- 170 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-----------------QLSGHDGGVWALKY---- 170 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE-----------------EECCCSSCEEEEEE----
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE-----------------EEeCCCcCEEEEEE----
Confidence 34778999885 56555 56899999999999999998764321 22357789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEEC--CCCcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
++++ .|++|+.||+|++||+.+++....+..+.. .|.+++|+ +++.+++ ++.|+.|++||++......
T Consensus 171 ---~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 171 ---AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS-----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp ---CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred ---cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCC-----ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 4555 899999999999999999998888877665 89999998 5677777 4589999999998754321
Q ss_pred ccccc---------------ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEE
Q 014125 209 EKYST---------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 209 ~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~ 273 (430)
..... ......+|...+.++. + ++.++++|+.||.|++||+++++.+..+.+|...|.+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 10000 1123456777888875 4 5569999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA 353 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 353 (430)
+|+++++++++ .||.|++||++++... ..+ .+|...|.+++|+ +.+|++|+.||.|++||+.+++...... +
T Consensus 319 ~~~~~~l~sg~-~dg~i~vwd~~~~~~~-~~~---~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~ 390 (464)
T 3v7d_B 319 DHERKRCISAS-MDTTIRIWDLENGELM-YTL---QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-H 390 (464)
T ss_dssp ETTTTEEEEEE-TTSCEEEEETTTTEEE-EEE---CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred cCCCCEEEEEe-CCCcEEEEECCCCcEE-EEE---eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-C
Confidence 99999999999 9999999999987533 232 5788999999997 5799999999999999999987766554 6
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
...+..++|+|++.+|++++ |+.+++|+.
T Consensus 391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 391 TNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp TTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred CCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 66788899999999999987 666666654
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.5e-38 Score=286.34 Aligned_cols=284 Identities=16% Similarity=0.252 Sum_probs=226.7
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.++.|+||++ +.||+|. |++|+|||..+++....+ ....|...|++++| +|+|++|
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~---------------~~~~~~~~V~sv~f-------spdg~~l 162 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL---------------QMEQPGEYISSVAW-------IKEGNYL 162 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE---------------ECCSTTCCEEEEEE-------CTTSSEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE---------------EecCCCCcEEEEEE-------CCCCCEE
Confidence 4778999985 5777765 899999999887532111 11245678999999 7799999
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
++|+.||.|++||+.+++.+..+..|.. .+.+++++ +.++++ +.|+.+++||........ ..+.+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~-----~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~-------~~~~~ 228 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV-------ATLSG 228 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE-------EEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCC-----ceEEEeeC--CCEEEEEeCCCceeEeeecccceee-------EEecc
Confidence 9999999999999999999988887665 77777774 567774 599999999987643322 22367
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce----eeEEeeccccCeEEEEEccCCCEE-EEE-ecCCCeEEEEe
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQFSRDGNYL-YTG-GRKDPYILCWD 294 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~~~d~~i~i~d 294 (430)
|...+..+.++| .+..+++++.|+.+++|+..+++ .+.....|...|.+++|+|++..+ +++ ++.|+.|++||
T Consensus 229 h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 229 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred cccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 888999999999 67799999999999999998764 355667788999999999977644 433 33799999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc--cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG--QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
++++.... .+ .+...+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|+|++|+||
T Consensus 308 ~~t~~~~~-~~----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 308 VCSGACLS-AV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp TTTTEEEE-EE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred CCccccce-ee----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99885443 22 2456788999999999888765 78999999999999999999999999999999999999999
Q ss_pred eCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 373 SGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 373 ~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
+. |++|++|++......
T Consensus 383 s~-----------------D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 383 AA-----------------DETLRLWRCFELDPA 399 (420)
T ss_dssp ET-----------------TTEEEEECCSCSSCC
T ss_pred ec-----------------CCeEEEEECCCCCcc
Confidence 85 566666666544333
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=279.80 Aligned_cols=270 Identities=18% Similarity=0.187 Sum_probs=203.4
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-E
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G 191 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 191 (430)
...|..+|++++| +++ +|++|+.|+.|++||+..+. ....+.. ..|...|.+++|+|++.+|++ +
T Consensus 10 ~~~h~~~v~~~~~-------s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 10 LKLYKEKIWSFDF-------SQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDE---TAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp EECCSSCEEEEEE-------ETT--EEEEEESSSCEEEEECSSSCCEEEEEECT---TCCCSCEEEEEECTTSSEEEEEE
T ss_pred eccCCCceeeecc-------CCC--EEEEEcCCCEEEEEEecCCCeEEEEEEec---CCccCCEEEEEECCCCCEEEEEe
Confidence 4467789999999 444 99999999999999998753 3333311 113348999999999999985 5
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc----eeeEEeeccccC
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGG 267 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~ 267 (430)
.|+.|++||+........ .......+.+|...|.+++|+| ++.+|++|+.|++|++||++.. +.+..+.+|...
T Consensus 78 ~D~~v~iw~~~~~~~~~~-~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTF-EMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp TTSCEEEEEC-------C-CCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred CCCcEEEEEcccCcCccc-cceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 899999999864221100 0112223468889999999999 6779999999999999999532 466778899999
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC--CCEEEEEccCCcEEEEEcCCC-
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS--GRHLGTGGQDGLVHIYDLQTG- 344 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~- 344 (430)
|.+++|+|++.+|++++ .|+.|++||....... ......+|...|.+++|+|+ +.+|++|+.|+.|++||+.++
T Consensus 156 v~~v~~~p~~~~l~s~s-~D~~i~iW~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 156 VKHVIWHPSEALLASSS-YDDTVRIWKDYDDDWE--CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp EEEEEECSSSSEEEEEE-TTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEc-CCCeEEEEECCCCCee--EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 99999999999999999 9999999998765322 12233678999999999998 678999999999999999764
Q ss_pred -------Ceeccccc-ccCCeeEEEEcCCCcEEEEeeCCceeeecCC-------------------------------Cc
Q 014125 345 -------KWISGFQA-AADTVNGFSFHPFLPMAASSSGHRRFPVDDF-------------------------------ED 385 (430)
Q Consensus 345 -------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~-------------------------------~~ 385 (430)
.....+.. |...|.+++|++++ +|++++.|+.+++|+. ..
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 33444544 88999999999765 8999999999998842 12
Q ss_pred cccccCCCcEEEEeecc
Q 014125 386 LHLSGDENCVSVWSFLY 402 (430)
Q Consensus 386 l~~~~~d~~i~~w~~~~ 402 (430)
|++++.|++|++|++..
T Consensus 312 las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEecCCCcEEEEEecc
Confidence 56677788888887653
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.8e-38 Score=287.12 Aligned_cols=277 Identities=18% Similarity=0.295 Sum_probs=229.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.... ...|...|.+++|.
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~~~h~~~v~~~~~~--- 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------LVGHTGGVWSSQMR--- 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------CCCCSSCEEEEEEE---
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------EcCCCCCEEEEEec---
Confidence 34578899997643 3555789999999999999999987643322 23466889999993
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+.++++|+.||.|++||+.+++....+..+.. .|.++.|+ +..++ ++.|+.|++||+..+.
T Consensus 169 ------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~----- 230 (445)
T 2ovr_B 169 ------DNIIISGSTDRTLKVWNAETGECIHTLYGHTS-----TVRCMHLH--EKRVVSGSRDATLRVWDIETGQ----- 230 (445)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEESSSCC-----
T ss_pred ------CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC-----cEEEEEec--CCEEEEEeCCCEEEEEECCCCc-----
Confidence 56999999999999999999998888877665 89999995 44566 6699999999998632
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
......+|...+.+++| ++..+++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++ .|+.|
T Consensus 231 ---~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i 301 (445)
T 2ovr_B 231 ---CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSI 301 (445)
T ss_dssp ---EEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCE
T ss_pred ---EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeE
Confidence 12223567889999999 4458999999999999999999999999999999999999 788999999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCc
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLP 367 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~ 367 (430)
++||++++.... .+ ..|...+.++.++ +.+|++|+.||.|++||+++++.+..+.. |...|.+++|+ ++
T Consensus 302 ~i~d~~~~~~~~-~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 302 RVWDVETGNCIH-TL---TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN 373 (445)
T ss_dssp EEEETTTCCEEE-EE---CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred EEEECCCCCEEE-EE---cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence 999999875432 22 4677888888774 67999999999999999999999888876 88899999996 58
Q ss_pred EEEEeeCCceeeecCCC
Q 014125 368 MAASSSGHRRFPVDDFE 384 (430)
Q Consensus 368 ~l~s~~~d~~~~vw~~~ 384 (430)
+|++++.||.|++|+..
T Consensus 374 ~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCeEEEEECC
Confidence 99999999999999654
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.4e-38 Score=280.99 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=231.0
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+....+|.+.|++++|+|++++|++++.||.|++|++.++.. .........|...|.+++|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------~~~~~~~~~~~~~v~~~~~----- 64 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------NVDLLQSLRYKHPLLCCNF----- 64 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------EEEEEEEEECSSCEEEEEE-----
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------cccceeeeecCCceEEEEE-----
Confidence 446679999999999999999999999999999999976531 0112233467789999999
Q ss_pred ccCCCCc-eEEEEeCCCcEEEEec-cCCceeeeeec--ccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 133 ASDPTSC-VFASTTRDHPIHLWDA-TTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 133 ~~~~~~~-~l~~~~~dg~i~vwd~-~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
+|++. +|++++.||.|++||+ .+++. ..+.. +. ..|.+++|+| +.+++ ++.|+.|++||++.....
T Consensus 65 --~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~-----~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 65 --IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEAN-----LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp --EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCC-----SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred --CCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCC-----CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 56799 9999999999999999 87765 44443 33 3899999999 87877 559999999998741100
Q ss_pred c-cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ce--eeEEeeccccCeEEEEEcc-CCCEEEE
Q 014125 208 F-EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-ME--LLYVLHGQEGGVTHVQFSR-DGNYLYT 282 (430)
Q Consensus 208 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~ 282 (430)
. .......... .+...+.+++|+|+. +++++.++.|++||+++ +. .......|...+.+++|+| +++++++
T Consensus 136 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 211 (342)
T 1yfq_A 136 VIAVKNLNSNNT-KVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211 (342)
T ss_dssp CEEEEESCSSSS-SSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE
T ss_pred cccccCCeeeEE-eeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE
Confidence 0 0000111112 267889999999843 99999999999999988 54 3334456788999999999 9999999
Q ss_pred EecCCCeEEEEeCCCC-----ceEEEEeeccc------CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 283 GGRKDPYILCWDLRKA-----VQVVYKLYRSS------EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~-----~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
++ .||.|++|+++.. ......+.... .|...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 212 ~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 212 SS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred Ee-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 99 9999999999876 12222221111 234589999999999999999999999999999999999999
Q ss_pred cc-cCCeeEEEEcCCCcEEEEeeCCce-eeecC
Q 014125 352 AA-ADTVNGFSFHPFLPMAASSSGHRR-FPVDD 382 (430)
Q Consensus 352 ~~-~~~v~~~~~~~~~~~l~s~~~d~~-~~vw~ 382 (430)
+| ...|.+++ |++++|++++.||. .+.+.
T Consensus 291 ~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 98 99999999 99999999998887 44443
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-38 Score=281.06 Aligned_cols=311 Identities=17% Similarity=0.245 Sum_probs=219.4
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.|++++|+|++++||+|+.||.|++||+.++... .........|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~---- 67 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-------------WELSDSWRAHDSSIVAIDWAS---- 67 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-------------EEEEEEEECCSSCEEEEEECC----
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-------------ceecceeccCCCcEEEEEEcC----
Confidence 467899999999999999999999999999999999864221 011223345778999999943
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCC---------ceeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTG---------LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDV 201 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~ 201 (430)
..++.+|++++.||.|++||+.++ +....+..+.. .|.+++|+|+ +.+++ ++.|+.|++||+
T Consensus 68 -~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 68 -PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp -GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred -CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 115889999999999999999887 33455554443 8999999999 88888 458999999999
Q ss_pred CCCCCcccc-----cccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCcee--eEEeeccccCeEEEE
Q 014125 202 HRPGRDFEK-----YSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQ 272 (430)
Q Consensus 202 ~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~~~~~i~~~~ 272 (430)
+........ ..........+...+.+++|+|+ .+.++++++.++.+.+|+...++. +..+.+|...|++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence 875432111 11112223467788999999995 378999999999998888877764 677888999999999
Q ss_pred EccCC----CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE----ccCCcEEEEEcCCC
Q 014125 273 FSRDG----NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----GQDGLVHIYDLQTG 344 (430)
Q Consensus 273 ~~~~~----~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~ 344 (430)
|+|++ ++|++++ .||.|++||++........ ............++....++.+ .....+.+|+....
T Consensus 222 ~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLAS----EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV 296 (351)
T ss_dssp ECCCSSCSSEEEEEEE-TTSCEEEEEEEECC-------------------------------------------CCSEEE
T ss_pred ECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCcccc----CCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence 99998 7899998 9999999999876433221 1222233333344444343333 33455677777777
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+.+..+.+|...|++++|+|++++|++++ .|+.|++|++..++.+..+
T Consensus 297 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-----------------~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAG-----------------DDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEECTTSSCEEEEEECSSSCCEEEEE-----------------TTSCEEEEEECTTSCEEEE
T ss_pred cEEEEEecccccEEEEEEcCCCCEEEEec-----------------CCCcEEEEecCcCcchhhe
Confidence 88889999999999999999999999998 4677888887766554443
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=272.30 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=220.5
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.+++|+||+++ +||+| .|++|+|||+.+++....+ ....|...|.+++| +|++++|
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~---------------~~~~~~~~V~~v~~-------~~~~~~l 82 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL---------------QMEQPGEYISSVAW-------IKEGNYL 82 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE---------------ECCSTTCCEEEEEE-------CTTSSEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE---------------EecCCCCeEEEEEE-------CCCCCEE
Confidence 36789999986 77766 4899999999887542211 12246678999999 7789999
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
++|+.||+|++||+.+++.+..+..+.. .+.++. +++..+++ +.++.+++|+........ ....+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~-----~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~-------~~~~~ 148 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHV-------ATLSG 148 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEE--EETTEEEEEETTSEEEEEETTSSSCEE-------EEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccc-----eEEEee--cCCCEEEEEecCCceEeeecCCCceeE-------EEEcC
Confidence 9999999999999999999988887654 555544 45677774 589999999987643221 22357
Q ss_pred CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeEEEEEccCCCEEE--EEecCCCeEEEEe
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLY--TGGRKDPYILCWD 294 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~--~~~~~d~~i~i~d 294 (430)
|...+..+.+.+ .+.++++++.|+.|++||+++++. ......+.+.|.+++++|++..++ .++..++.|++||
T Consensus 149 ~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 149 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 788899999999 677999999999999999987653 345556788999999999876443 2333789999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc--cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG--QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
.+....... ..+...+..+.|+|++..+++++ .|+.|++||+++++++..+.+|.+.|++++|+|++++|+++
T Consensus 228 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 228 VCSGACLSA-----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp TTTCCEEEE-----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ccccccccc-----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 988754432 24667789999999998877654 79999999999999999999999999999999999999999
Q ss_pred eCCceeeecCC
Q 014125 373 SGHRRFPVDDF 383 (430)
Q Consensus 373 ~~d~~~~vw~~ 383 (430)
+.|+.|+||+.
T Consensus 303 s~D~~v~iWd~ 313 (318)
T 4ggc_A 303 AADETLRLWRC 313 (318)
T ss_dssp ETTTEEEEECC
T ss_pred ecCCeEEEEEC
Confidence 97665555554
No 69
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-39 Score=290.67 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=196.7
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCCCcEEEE-EcCC
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK 194 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~ 194 (430)
+..+|.+++| +|++++|++++.||.|++||+.++ +....+..|.. .|.+++|+|++++|++ +.|+
T Consensus 10 ~~~~v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 10 LPKPSYEHAF-------NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-----IVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp CSSCCSCCEE-------CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-----CEEEEEECTTTCCEEEEETTS
T ss_pred CCCcEEEEEE-------CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-----eEEEEEEeCCCCEEEEEeCCC
Confidence 4568999999 778999999999999999999988 56666665554 8999999999998885 5899
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---eeEEeec-cccCeEE
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHG-QEGGVTH 270 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~~~-~~~~i~~ 270 (430)
.|++||+..... . .......+|...|.+++|+| ++.+|++++.|+.|++||+++++ ....+.. |...|.+
T Consensus 78 ~v~vwd~~~~~~-~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 78 NAYVYEKRPDGT-W----KQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp SEEEC------C-C----CCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred eEEEEEcCCCCc-e----eeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 999999987531 0 11122356888999999999 67799999999999999999876 4667777 9999999
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCc--------------eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAV--------------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
++|+|++++|++++ .|+.|++||++... ......... .|...|.+++|+|++++|++++.||.|
T Consensus 152 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999999 99999999986321 111122233 788999999999999999999999999
Q ss_pred EEEEcCCCCe----ecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 337 HIYDLQTGKW----ISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 337 ~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++||+.+++. +..+.+|...|.+++|+|++++|++++.++.+.+|
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 9999999988 88899999999999999999999999877777544
No 70
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-37 Score=272.71 Aligned_cols=250 Identities=18% Similarity=0.271 Sum_probs=204.0
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|...|++++|+|+|++|++|+.|++|++||+.+++.. .....|...|.+++|
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~-----------------~~~~~h~~~v~~~~~---- 115 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-----------------QRFVGHKSDVMSVDI---- 115 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE----
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-----------------EEEccCCCcEEEEEE----
Confidence 35678899999999999999999999999999999999876432 233457789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC------cEEE-EEcCCeEEEEEcCCC
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG------TKIF-AGYNKSVRVFDVHRP 204 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~-~~~d~~i~v~d~~~~ 204 (430)
+|++.+|++|+.|++|++||+.. +.+..+..+.. .|.++.|+|.. ..++ ++.|+.|++||++..
T Consensus 116 ---~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 186 (319)
T 3frx_A 116 ---DKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186 (319)
T ss_dssp ---CTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSS-----CEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred ---cCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCC-----cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence 77899999999999999999964 45556655544 89999999854 3666 569999999999763
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.....+.+|...|.+++|+| ++.+|++|+.||+|++||+++++.+..+.. ...|.+++|+|++.+|++++
T Consensus 187 --------~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 187 --------QIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp --------EEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE
T ss_pred --------hhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc
Confidence 22223467889999999999 677999999999999999999999888874 46899999999999988876
Q ss_pred cCCCeEEEEeCCCCceEEEEeec-----ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYR-----SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
++.+++|++....... .+.. ...+...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 257 --~~~i~v~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 257 --ATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp --TTEEEEEEETTEEEEE-EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred --CCCcEEEEeCcCeeee-ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 5669999998753322 2211 1234667899999999999999999999999998764
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-37 Score=269.79 Aligned_cols=247 Identities=14% Similarity=0.168 Sum_probs=196.4
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCC--ceeeeeecccccccccceEEEEECCC--CcEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF- 189 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~- 189 (430)
...|...|++++| +|++++|++|+.|++|++||+..+ +.+..+..|.. +|.+++|+++ +.+|+
T Consensus 5 ~~~h~~~V~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 5 ANAHNEMIHDAVM-------DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CCSCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEE
T ss_pred ccCCcCceEEEEE-------CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEE
Confidence 3457789999999 779999999999999999999753 55667766655 9999999864 78888
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCce--eeEEeecccc
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNME--LLYVLHGQEG 266 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~ 266 (430)
++.|++|++||++.+... ......+|...|.+++|+|+. +.+|++++.|++|++||++++. ....+.+|..
T Consensus 73 ~s~D~~v~iWd~~~~~~~------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp EETTTEEEEEEBSSSCBC------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred EcCCCEEEEEEcCCCceE------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 558999999999763210 111235678899999999952 6799999999999999998763 2456778999
Q ss_pred CeEEEEEccC-------------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---CEEEEE
Q 014125 267 GVTHVQFSRD-------------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---RHLGTG 330 (430)
Q Consensus 267 ~i~~~~~~~~-------------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~ 330 (430)
.|.+++|+|+ +++|++++ .|+.|++||+++............+|...|.+++|+|++ .+|+++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 9999999997 56899999 999999999987653322223346899999999999985 899999
Q ss_pred ccCCcEEEEEcCCCCe---eccc--ccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 331 GQDGLVHIYDLQTGKW---ISGF--QAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
+.|++|+|||+++... ...+ ..|...|.+++|+|++++|++++.|+.+++
T Consensus 226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 9999999999987531 1222 467889999999999999999985433333
No 72
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=275.93 Aligned_cols=261 Identities=17% Similarity=0.253 Sum_probs=202.3
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
...+|.+.|++++|+|+|++||+|+.|++|+||++..+.. ........|...|.+++|
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~---------------~~~~~~~~h~~~v~~v~~------- 113 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF---------------ECVTTLEGHENEVKSVAW------- 113 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E---------------EEEEEECCCSSCEEEEEE-------
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe---------------EEEEEccCCCCCceEEEE-------
Confidence 3478999999999999999999999999999999875421 112233457789999999
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCce---eeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|++|+.|+.|++||+.++.. +..+..+. ..|.+++|+|++.+|++ +.|+.|++||++....
T Consensus 114 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---- 184 (345)
T 3fm0_A 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-----QDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---- 184 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC-----SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE----
T ss_pred eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC-----CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE----
Confidence 77899999999999999999987643 33444443 38999999999999985 5899999999875321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc---------------eeeEEeec-cccCeEEEEEc
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---------------ELLYVLHG-QEGGVTHVQFS 274 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---------------~~~~~~~~-~~~~i~~~~~~ 274 (430)
.....+.+|...|.+++|+| ++.+|++|+.|++|++||.... +.+..+.+ |...|.+++|+
T Consensus 185 --~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 185 --VCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp --EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred --EEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 11123467889999999999 6779999999999999996321 22334444 78899999999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCce-----EEEEeecccCCccceEEEEEcCCC-CEEEEEccCCcEEEEEcCCCCeec
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQ-----VVYKLYRSSEHTNQRILFDIEPSG-RHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
|++..|++++ .|+.|++|+...... .........+|...|++++|+|++ .+|++|+.||.|++|++.+++...
T Consensus 262 ~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 262 QLTGALATAC-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTTCCEEEEE-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred cCCCEEEEEe-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 9999999999 999999999875421 111122235789999999999998 599999999999999999887665
Q ss_pred cc
Q 014125 349 GF 350 (430)
Q Consensus 349 ~~ 350 (430)
.+
T Consensus 341 ~~ 342 (345)
T 3fm0_A 341 HH 342 (345)
T ss_dssp --
T ss_pred cc
Confidence 44
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.2e-38 Score=287.54 Aligned_cols=287 Identities=12% Similarity=0.141 Sum_probs=221.5
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
+..| ..+....|+|++++||+|+.||.|++||+.++... .....|...|.+++| +
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~~~~-------~ 148 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-----------------EIDQAHVSEITKLKF-------F 148 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-----------------EETTSSSSCEEEEEE-------C
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-----------------eecccccCccEEEEE-------C
Confidence 3444 44555678999999999999999999998765321 122357789999999 6
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccccc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
|++.+|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.+|++ +.|+.|++||++..... ..+
T Consensus 149 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~~ 219 (420)
T 3vl1_A 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI----HTF 219 (420)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE----EEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee----EEe
Confidence 7899999999999999999999998888876665 8999999999999884 58999999999864221 111
Q ss_pred cCCCCCC---------------------CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEE
Q 014125 215 KGNKEGQ---------------------AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQ 272 (430)
Q Consensus 215 ~~~~~~~---------------------~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~ 272 (430)
.. ...+ ...+.+++|+| ++.+|++|+.||.|++||+++++....+. .|...|.+++
T Consensus 220 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 220 NR-KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp CB-TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE
T ss_pred ec-CCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE
Confidence 11 1122 23455555677 67799999999999999999988766664 5788999999
Q ss_pred EccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe-----
Q 014125 273 FSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW----- 346 (430)
Q Consensus 273 ~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----- 346 (430)
|+|++. +|++++ .||.|++||+++.......+. ..+...+.++.+ +++++|++++.||.|++|++.....
T Consensus 298 ~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 298 VDGNNANYIYAGY-ENGMLAQWDLRSPECPVGEFL--INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp ECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEE--ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred EeCCCCCEEEEEe-CCCeEEEEEcCCCcCchhhhh--ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 999999 899998 999999999998754332332 235667887755 5788999999999999999987422
Q ss_pred ----ecccccccCCeeEEEEcCCCc---EEEEeeCCceeeecC
Q 014125 347 ----ISGFQAAADTVNGFSFHPFLP---MAASSSGHRRFPVDD 382 (430)
Q Consensus 347 ----~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~~~vw~ 382 (430)
...+..|.+.|.+++|+|++. .|++.+.+|.+.+|+
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 223456888999999999999 666666555555554
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.8e-37 Score=280.52 Aligned_cols=282 Identities=18% Similarity=0.323 Sum_probs=227.1
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
....+|...|++++| ++++|++|+.||.|++||+.+++... ....|...|.+++|
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~-----------------~~~~h~~~v~~l~~------ 181 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-----------------ILTGHTGSVLCLQY------ 181 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-----------------EECCCSSCEEEEEC------
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE-----------------EEcCCCCcEEEEEE------
Confidence 344577888999887 78999999999999999998664321 23346689999988
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|++ ..++ ++.|+.|++||+......
T Consensus 182 ---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~----- 246 (435)
T 1p22_A 182 ---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-----AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI----- 246 (435)
T ss_dssp ---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS-----CEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-----
T ss_pred ---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC-----cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-----
Confidence 577999999999999999999999888877655 899999974 3555 669999999999874321
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
.......+|...|.+++| ++..+++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++ .||.|++
T Consensus 247 ~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~i 320 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRL 320 (435)
T ss_dssp EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEE
T ss_pred eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEE
Confidence 111234678889999999 3459999999999999999999999999999999999999 567999999 9999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC---------eecccccccCCeeEEEEc
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK---------WISGFQAAADTVNGFSFH 363 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~ 363 (430)
||++++.... .+ .+|...|.+++| ++.+|++|+.||.|++||+.+++ .+..+.+|.+.|.+++|
T Consensus 321 wd~~~~~~~~-~~---~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 393 (435)
T 1p22_A 321 WDIECGACLR-VL---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF- 393 (435)
T ss_dssp EETTTCCEEE-EE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-
T ss_pred EECCCCCEEE-EE---eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-
Confidence 9999875432 22 578899999998 68899999999999999998765 77888899999999999
Q ss_pred CCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccc
Q 014125 364 PFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMM 406 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~ 406 (430)
++.+|++++ .||.|++|++..+...
T Consensus 394 -~~~~l~s~s-----------------~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 394 -DEFQIVSSS-----------------HDDTILIWDFLNDPAA 418 (435)
T ss_dssp -CSSCEEECC-----------------SSSEEEEEC-------
T ss_pred -CCCEEEEEe-----------------CCCEEEEEECCCCCCc
Confidence 677777776 5677777777655443
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=272.37 Aligned_cols=290 Identities=13% Similarity=0.186 Sum_probs=225.8
Q ss_pred eeecceeecccCCCceeEEEECcC---CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeee
Q 014125 48 HFYNQFRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124 (430)
Q Consensus 48 ~~~~~~~~~~~h~~~v~~~~~sp~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 124 (430)
.+.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+.. .........|...|.+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---------------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---------------CEEEEEEEECSSCEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---------------ceeEEEeccccCCEEE
Confidence 344566789999999999999999 6999999999999999998621 1112344557789999
Q ss_pred eeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE--CCCCcEEEE-EcCCeEEEEEc
Q 014125 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFA-GYNKSVRVFDV 201 (430)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~-~~d~~i~v~d~ 201 (430)
++| +|++++|++++.||.|++||+.+++..... .+. ..|.+++| +|++.++++ +.|+.|++||+
T Consensus 92 ~~~-------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 92 VCW-------SDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHD-----APVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECS-----SCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEE-------CcCCCEEEEEcCCCcEEEEEcCCCCceeec-ccc-----CceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 999 778999999999999999999998876643 333 38999999 999988884 58999999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe--eccccCeEEEEEccCCCE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 279 (430)
+...... .+ ..+ ..+.++.+.+ ..+++++.++.+.+|+++........ ..+...+.++++.++...
T Consensus 159 ~~~~~~~----~~----~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 159 RSSNPMM----VL----QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp SCSSCSE----EE----ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred CCCcEEE----EE----ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC
Confidence 8743211 11 122 2466777765 37888899999999999876443222 223445666776665554
Q ss_pred ----EEEEecCCCeEEEEeCCCCce--EEEEeecccCCcc------------ceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 280 ----LYTGGRKDPYILCWDLRKAVQ--VVYKLYRSSEHTN------------QRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 280 ----l~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
+++++ .||.|++||++.... ....+ ..|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus 227 ~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 227 KPTGFALGS-IEGRVAIHYINPPNPAKDNFTF---KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp CEEEEEEEE-TTSEEEEEESSCSCHHHHSEEE---ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCeEEEec-CCCcEEEEecCCCCccccceee---eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 88888 999999999987632 11111 23333 7999999999999999999999999999
Q ss_pred CCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 342 QTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+++.+..+.+|..+|.+++|+|++++|++++.|+..+.|
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 303 DARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp TTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred CCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 9999999999999999999999999999999987644443
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-36 Score=276.11 Aligned_cols=287 Identities=18% Similarity=0.259 Sum_probs=235.5
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|++++|+ +++|++|+.||+|++||+.+++... ....|...|.+++|
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-----------------~~~~h~~~v~~~~~---- 207 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-----------------TLYGHTSTVRCMHL---- 207 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE-----------------EECCCSSCEEEEEE----
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE-----------------EECCCCCcEEEEEe----
Confidence 456788999999999998 5799999999999999998764321 22346678999998
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
++..+++|+.||.|++||+.+++....+..+.. .|.+++| ++.+++ ++.|+.|++||++...
T Consensus 208 -----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~----- 270 (445)
T 2ovr_B 208 -----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYDFMVKVWDPETET----- 270 (445)
T ss_dssp -----ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETTSCEEEEEGGGTE-----
T ss_pred -----cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCCCEEEEEECCCCc-----
Confidence 356899999999999999999999888877665 8999999 566666 5689999999997631
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
......+|...+.++.| ++..+++++.|+.|++||+++++.+..+.+|...+.++.+ +++++++++ .||.|
T Consensus 271 ---~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i 341 (445)
T 2ovr_B 271 ---CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGN-ADSTV 341 (445)
T ss_dssp ---EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEE-TTSCE
T ss_pred ---EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEe-CCCeE
Confidence 22233578889999999 4568999999999999999999999999999999998887 567899999 99999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc-----ccccCCeeEEEEcCC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF-----QAAADTVNGFSFHPF 365 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~ 365 (430)
++||++++... ..+.....|...|.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+|+
T Consensus 342 ~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 342 KIWDIKTGQCL-QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp EEEETTTCCEE-EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred EEEECCCCcEE-EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 99999887543 3443334588899999996 579999999999999999999998877 468889999999999
Q ss_pred CcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccc
Q 014125 366 LPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA 403 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~ 403 (430)
+.++++++.||. .+..|.+||+...
T Consensus 419 ~~~la~~~~dg~-------------~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGT-------------EETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSS-------------SCCEEEEEECCCC
T ss_pred EEEEEEcccCCC-------------CccEEEEEECCCC
Confidence 999999987653 1234777776643
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.9e-36 Score=277.46 Aligned_cols=281 Identities=18% Similarity=0.244 Sum_probs=221.6
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.. .....|...|.+++|.+
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~l~~~~-- 213 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT-----------------HVFEGHNSTVRCLDIVE-- 213 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEEE--
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE-----------------EEECCCCCccEEEEEec--
Confidence 445678999999999999988 9999999999999999876422 12334678999999976
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecc------------------cccccccceEEEEECCCCcEEEE-Ec
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY------------------DAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
.+++.+|++++.||.|++||+.++......... ....+...+.++ ++++.++++ +.
T Consensus 214 ---~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 214 ---YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp ---SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred ---CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 467899999999999999999887543221100 001122355555 567888885 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++||++... ......+|...|.+++|+| ++..+++|+.||.|++||+++++.+..+.+|...|.+++
T Consensus 289 d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 289 DNTLIVWDVAQMK--------CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TSCEEEEETTTTE--------EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCc--------EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 9999999997631 2223357888999999999 677999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQ 351 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~ 351 (430)
|+ +.+|++++ .||.|++||+++....... .+...+..++|+|++++|++|+ ||.|++||+.+++.+.. +.
T Consensus 360 ~~--~~~l~s~s-~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~ 430 (464)
T 3v7d_B 360 LS--DKFLVSAA-ADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL 430 (464)
T ss_dssp EC--SSEEEEEE-TTSEEEEEETTTCCEEEEE-----ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred Ec--CCEEEEEe-CCCcEEEEECCCCceeeee-----cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc
Confidence 97 57899999 9999999999987544322 2555677789999999999998 89999999999999876 67
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCc
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.|...|.+++|+ ...++++++.|+
T Consensus 431 ~~~~~v~~v~~~-~~~l~~~~~~~g 454 (464)
T 3v7d_B 431 KDADQIWSVNFK-GKTLVAAVEKDG 454 (464)
T ss_dssp TTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred cCCCcEEEEEec-CCEEEEEEEeCC
Confidence 788999999997 344555555443
No 78
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-36 Score=269.74 Aligned_cols=253 Identities=16% Similarity=0.264 Sum_probs=196.9
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
....+.+|...|++++|+|++.+|++|+.|++|++||+.+++.. .....|...|.+++|
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~-----------------~~~~~h~~~v~~v~~---- 126 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY-----------------KRFVGHQSEVYSVAF---- 126 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE-----------------EEEECCCSCEEEEEE----
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE-----------------EEEcCCCCcEEEEEE----
Confidence 34578899999999999999999999999999999999876432 123457789999999
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC----------cEEE-EEcCCeEEEEE
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG----------TKIF-AGYNKSVRVFD 200 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~-~~~d~~i~v~d 200 (430)
+|++++|++++.|+.|++||+.... ..... ....+...|.+++|+|++ .+++ ++.|+.|++||
T Consensus 127 ---sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 127 ---SPDNRQILSAGAEREIKLWNILGEC-KFSSA--EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp ---CSSTTEEEEEETTSCEEEEESSSCE-EEECC--TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred ---CCCCCEEEEEcCCCEEEEEeccCCc-eeeee--cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 7789999999999999999997433 22222 111334489999999987 5677 56999999999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCE
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
... .......+|...|.+++|+| ++.+|++|+.||.|++||+... .....+. +...|.+++|+|++.+
T Consensus 201 ~~~---------~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~ 269 (343)
T 2xzm_R 201 TNF---------QIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQW 269 (343)
T ss_dssp TTT---------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCE
T ss_pred CCC---------ceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCE
Confidence 532 11222357888999999999 6779999999999999999543 3444443 5567999999999987
Q ss_pred EEEEecCCCeEEEEeCCCCceEEE-Eee--------cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVY-KLY--------RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~-~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
++++ .|+.|++||+.+...... .+. ...+|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 270 la~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 270 VAVG--TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEE--ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEE--CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7654 588899999987543211 111 01257788999999999999999999999999998764
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=273.56 Aligned_cols=261 Identities=18% Similarity=0.241 Sum_probs=210.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
..++.+|.+.|++++|+|++++||+|+.||.|+||++.... .........|...|.+++|.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~~~~~~--- 65 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH--- 65 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECC---
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------ceeeeEecCCCCcEEEEEeCC---
Confidence 45788999999999999999999999999999999986321 111223345778999999943
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRD 207 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~ 207 (430)
..++.+|++++.||.|++||+.+++ ....+..+.. .|.+++|+|+ +.+++ ++.|+.|++||++.....
T Consensus 66 --~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 66 --PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc-----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 1238899999999999999999987 4555554443 8999999999 88888 559999999999874321
Q ss_pred ccccccccCCCCCCCcceEEEEEcCC------------CCceEEEecCCCeEEEEEcCCce----eeEEeeccccCeEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHV 271 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~ 271 (430)
.. .....|...|.+++|+|. ++.++++++.||.|++||++++. ....+.+|...|.++
T Consensus 139 ~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 139 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp CE------EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred ee------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 11 123567788999999995 47799999999999999998754 456777899999999
Q ss_pred EEccC---CCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 272 QFSRD---GNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 272 ~~~~~---~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
+|+|+ +.+|++++ .||.|++||++..... .........+...+.+++|+|++++|++++.||.|++|++....
T Consensus 213 ~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EECCCCCCCCeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999 88999999 9999999999886422 22333335588899999999999999999999999999998543
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-36 Score=276.18 Aligned_cols=273 Identities=16% Similarity=0.239 Sum_probs=215.8
Q ss_pred ceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC-CCc
Q 014125 62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC 139 (430)
Q Consensus 62 ~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 139 (430)
....++++|+...+ ++++.||.|+||++...... .........|...|.+++| +| ++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------~~~~~~~~~h~~~V~~~~~-------~p~~~~ 95 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------DKNVPLVCGHTAPVLDIAW-------CPHNDN 95 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------CTTCCCBCCCSSCEEEEEE-------CTTCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------CCCCceEecCCCCEEEEEe-------CCCCCC
Confidence 35568999976544 45788999999999653211 0111233457789999999 66 789
Q ss_pred eEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 140 VFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++|+.||.|++||+.++ +.+..+..|.. .|.+++|+|++ .+|+ ++.|+.|++||++...
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----- 165 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----- 165 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----
Confidence 9999999999999999987 45566665554 89999999998 5777 5589999999998642
Q ss_pred cccccCCC--CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccC-eEEEEEccCCCEEEEE---
Q 014125 211 YSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGG-VTHVQFSRDGNYLYTG--- 283 (430)
Q Consensus 211 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~--- 283 (430)
..... ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++
T Consensus 166 ---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 166 ---AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp ---EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred ---ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC
Confidence 11122 56788999999999 6779999999999999999999998888 678775 8999999999999888
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE-EEccCCcEEEEEcCCCCe-ecccccc--cCCeeE
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQTGKW-ISGFQAA--ADTVNG 359 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~~--~~~v~~ 359 (430)
+ .|+.|++||+++......... ..+...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..| ...|.+
T Consensus 242 ~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~ 318 (402)
T 2aq5_A 242 M-SERQVALWDTKHLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRG 318 (402)
T ss_dssp T-CCEEEEEEETTBCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSE
T ss_pred C-CCceEEEEcCccccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccc
Confidence 6 899999999998654222211 34667899999999999986 566799999999999885 5555544 589999
Q ss_pred EEEcCCCcEEEE
Q 014125 360 FSFHPFLPMAAS 371 (430)
Q Consensus 360 ~~~~~~~~~l~s 371 (430)
++|+|++.++++
T Consensus 319 ~~~sp~~~~~~s 330 (402)
T 2aq5_A 319 MGYMPKRGLEVN 330 (402)
T ss_dssp EEECCGGGSCGG
T ss_pred eEEeccccccee
Confidence 999999887654
No 81
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.6e-37 Score=268.53 Aligned_cols=248 Identities=17% Similarity=0.210 Sum_probs=192.5
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECC--CCcEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNP--TGTKIF 189 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 189 (430)
....|...|++++| +|++++|++|+.|++|++||+.++. .+..+..|.. .|.+++|+| ++.+|+
T Consensus 8 ~~~~H~~~V~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 8 VDTSHEDMIHDAQM-------DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ------CCEEEEEE-------CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEE
T ss_pred ecccccCeEEEeeE-------cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEE
Confidence 34567889999999 6789999999999999999998875 3455665554 999999986 377777
Q ss_pred -EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCcee---eEEeecc
Q 014125 190 -AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMEL---LYVLHGQ 264 (430)
Q Consensus 190 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~ 264 (430)
++.|++|++||++.+... ......+|...|.+++|+|+. +.+|++|+.|++|++||++.+.. ...+.+|
T Consensus 76 s~s~D~~v~iWd~~~~~~~------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWE------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp EEETTSCEEEECCSSSCCC------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEECCCEEEEEECCCCcce------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 569999999999763211 111235788899999999953 67999999999999999987532 3456678
Q ss_pred ccCeEEEEEccC-----------------CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC---
Q 014125 265 EGGVTHVQFSRD-----------------GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--- 324 (430)
Q Consensus 265 ~~~i~~~~~~~~-----------------~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 324 (430)
...|.+++|+|+ +++|++++ .|+.|++||++..... .......+|...|.+++|+|++
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~-~~~~~l~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQW-KEEQKLEAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCE-EEEECCBCCSSCEEEEECCCCSSCS
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEec-CCCeEEEEEeCCCCcc-ceeeecccCCCceEEEEecCCCCCC
Confidence 899999999997 46888888 9999999999754321 1223346899999999999986
Q ss_pred -CEEEEEccCCcEEEEEcCCCC----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 325 -RHLGTGGQDGLVHIYDLQTGK----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 325 -~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+|++|+.||+|++|++.+.. ....+..|...|.+++|+|++++|++++.|+.+++|
T Consensus 228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 889999999999999998631 233456788999999999999999999865444444
No 82
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.5e-35 Score=261.23 Aligned_cols=276 Identities=11% Similarity=0.110 Sum_probs=199.7
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.|++++|+|||++||+|+.++ ++||++.+.... ... +...+..+++
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~------------------~~~-~~~~~~~~~~------ 66 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI------------------MSQ-EMRHLSKVRM------ 66 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE------------------EEE-ECSCCCEEEE------
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee------------------eee-ecCCeEEEEE------
Confidence 35678999999999999999999998875 789998743211 111 1123566666
Q ss_pred cCCCCceE-EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 134 SDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 134 ~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
.++++.+ ++++.|+.|++||+.+++.+..+.... .|.+++|+++. ++++.++.|++||+.........+
T Consensus 67 -~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~- 136 (355)
T 3vu4_A 67 -LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDD- 136 (355)
T ss_dssp -CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCC-
T ss_pred -cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEe-
Confidence 3455555 677888999999999999888776432 88999998764 555678999999998742221111
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCce----------------eeEEeeccccCeEEEEEc
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNME----------------LLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~----------------~~~~~~~~~~~i~~~~~~ 274 (430)
.. +...+++++ ..+++ |+.+|.|++||+++++ .+..+.+|.+.|++++|+
T Consensus 137 ------~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s 204 (355)
T 3vu4_A 137 ------IR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN 204 (355)
T ss_dssp ------EE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred ------cc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence 11 345566766 35555 6899999999999765 267888999999999999
Q ss_pred cCCCEEEEEecCCCe-EEEEeCCCCceEEEEeecccC-CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec--cc
Q 014125 275 RDGNYLYTGGRKDPY-ILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS--GF 350 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~ 350 (430)
|+|++|++++ .|++ |++||++++.... .+. .+ |...|.+++|+|+|++|++++.|+.|++||++.+.... .+
T Consensus 205 ~~g~~l~s~s-~d~~~v~iwd~~~~~~~~-~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~ 280 (355)
T 3vu4_A 205 RKSDMVATCS-QDGTIIRVFKTEDGVLVR-EFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHAL 280 (355)
T ss_dssp TTSSEEEEEE-TTCSEEEEEETTTCCEEE-EEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEET
T ss_pred CCCCEEEEEe-CCCCEEEEEECCCCcEEE-EEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccc
Confidence 9999999999 9998 9999999875443 221 13 88999999999999999999999999999998653211 11
Q ss_pred c---------------------cccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 351 Q---------------------AAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 351 ~---------------------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
. .+......++|+|++++|++++.||.+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 281 KGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETF 332 (355)
T ss_dssp TTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEE
T ss_pred cceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEE
Confidence 1 111234678999999999988865555544
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-35 Score=292.06 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=203.6
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++... ....|...|.+++|
T Consensus 48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~-----------------~~~~~~~~v~~~~~----- 105 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-----------------DFEAHPDYIRSIAV----- 105 (814)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------------EEECCSSCEEEEEE-----
T ss_pred EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEecCCCCEEEEEE-----
Confidence 45677999999999999999999999999999999998764321 22346689999999
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCC-ceeeeeecccccccccceEEEEECC-CCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
+|++.+|++++.||.|++||+.++ .....+..+.. .|.+++|+| ++..++ ++.|+.|++||+........
T Consensus 106 --s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 178 (814)
T 3mkq_A 106 --HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (814)
T ss_dssp --CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred --eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence 778999999999999999999987 55566665554 899999999 777777 45899999999976432211
Q ss_pred ccccccCCCCCCCcceEEEEEcCC-CCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
. ...+...+.+++|+|. ++.++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++ .||
T Consensus 179 ~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 250 (814)
T 3mkq_A 179 L-------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDG 250 (814)
T ss_dssp E-------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTS
T ss_pred E-------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCC
Confidence 1 1234467999999983 456899999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC--EEEEEccCCcEEEEEcCC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR--HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~ 343 (430)
.|++||+.+..... .. ..+...+.+++|+|++. +++++ .++.+.+|++..
T Consensus 251 ~v~vwd~~~~~~~~-~~---~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 302 (814)
T 3mkq_A 251 TLKIWNSSTYKVEK-TL---NVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGN 302 (814)
T ss_dssp CEEEEETTTCSEEE-EE---CCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSC
T ss_pred eEEEEECCCCcEEE-Ee---ecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCC
Confidence 99999999875432 22 45778999999999987 35544 566788888754
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=280.40 Aligned_cols=261 Identities=9% Similarity=0.087 Sum_probs=191.8
Q ss_pred eecCCCeeeeeeeccccCc---------------------cCCCCceEEEEeCCCcEEEEeccCCceee----eeecccc
Q 014125 115 VVTEGESVYDFCWFPHMSA---------------------SDPTSCVFASTTRDHPIHLWDATTGLLRC----TYRAYDA 169 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~---------------------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~ 169 (430)
.+..+..|++++|+|.... .+|++..|++++.|++|+||++.+++... .+..+.
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~- 207 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF- 207 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC-
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC-
Confidence 3445688999999885310 13445566667789999999998876432 223322
Q ss_pred cccccceEEEEECCC------CcEEE-EEcCCeEEEEEcCCCCCccc---ccccccCCCCCCCcceEEEEEcCCCCceEE
Q 014125 170 VDEITAAFSVAFNPT------GTKIF-AGYNKSVRVFDVHRPGRDFE---KYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (430)
Q Consensus 170 ~~~~~~v~~~~~~~~------~~~l~-~~~d~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 239 (430)
..|.+++|+|+ +.+|+ ++.|++|++||+........ ........+.+|...|++++|+| + ..|+
T Consensus 208 ----~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 208 ----GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp ----CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred ----CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence 37999999997 46788 55899999999976432100 00111123467889999999998 4 3899
Q ss_pred EecCCCeEEEEEcCCc-eeeEEeeccccCeEEE--EEccCC-CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 240 IGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV--QFSRDG-NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 240 ~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
+|+.||+|++||++++ .+...+.+|...|+++ +|+|++ .+|++++ .|++|++||+++......... ......+
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S-~D~tvklWD~~~~~~~~~~~~--~~~~~~v 358 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA-VDGYFYIFNPKDIATTKTTVS--RFRGSNL 358 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE-TTSEEEEECGGGHHHHCEEEE--ECSCCSC
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec-cCCeEEEEECCCCCccccccc--ccccCcc
Confidence 9999999999999976 4456688999999999 578888 8899999 999999999987643321111 1111347
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCc
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~ 385 (430)
.+++|+|+++.+++++.|+.|++||++++..+..+.+|.+.|++++|+|++++|++|+.|+.+++|+...
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 8899999999999999999999999999998888999999999999999999999999999999997543
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-36 Score=271.26 Aligned_cols=273 Identities=13% Similarity=0.146 Sum_probs=219.7
Q ss_pred eeecCCCeeeeeeeccccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC----CcEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKI 188 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l 188 (430)
+...|..+|.+++|+|. ++ ....+++++.++.|++||+.+++.+..+..+....+...|.+++|+|+ +.+|
T Consensus 13 ~~~~h~~~v~~i~~~p~----~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWH----SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EECTTCSCEEEEEECTT----CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred eecCCCCceEEEEEecc----cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 34468899999999663 12 244566677777999999998888877776654445568999999999 5677
Q ss_pred E-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---ecc
Q 014125 189 F-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQ 264 (430)
Q Consensus 189 ~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~ 264 (430)
+ ++.|+.|++||+.... ......+|...|.+++|+|+++.+|++++.||.|++||+++++....+ ..|
T Consensus 89 ~~~~~dg~i~v~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQ--------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp EEEETTCEEEEECTTTCC--------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred EEecCCCEEEEEEchhce--------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 7 4599999999997632 122235788899999999967789999999999999999999988887 679
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE------------------------EeecccCCccceEEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY------------------------KLYRSSEHTNQRILFDI 320 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~------------------------~~~~~~~~~~~v~~~~~ 320 (430)
...|.+++|+|++++|++++ .||.|++||+++...... .......|...|.+++|
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 99999999999999999999 999999999986532100 00111238889999999
Q ss_pred cCCCCEEEEEccCCcEEEEEcCCCCe--------------ecccccccCCeeEEEEcCC--CcEEEEeeCCceeeecCCC
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQTGKW--------------ISGFQAAADTVNGFSFHPF--LPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~~~vw~~~ 384 (430)
+ +++|++++.||.|++||+.+++. +..+..|...|.+++|+|+ +++|++++.||.|++|+..
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 8 77999999999999999988754 6677789999999999999 9999999999999999543
Q ss_pred c-------------------------------cccccCCCcEEEEeec
Q 014125 385 D-------------------------------LHLSGDENCVSVWSFL 401 (430)
Q Consensus 385 ~-------------------------------l~~~~~d~~i~~w~~~ 401 (430)
. |++++.||.|++|++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 2 6677778888888764
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.3e-35 Score=269.66 Aligned_cols=248 Identities=17% Similarity=0.319 Sum_probs=201.4
Q ss_pred ceeeecCCCeeeeeeeccccCccCCC-CceEEEEeCCCcEEEEeccC----------CceeeeeecccccccccceEEEE
Q 014125 112 ASLVVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATT----------GLLRCTYRAYDAVDEITAAFSVA 180 (430)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~ 180 (430)
......|...|.+++|+ |+ +.+|++++.||.|++|++.+ ......+..|.. .|.+++
T Consensus 121 ~~~~~~h~~~v~~l~~~-------p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~ 188 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYM-------PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLS 188 (430)
T ss_dssp EEEEEEESSCCSEEEEE-------TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEE
T ss_pred EEEEEcCCCcEEEEEEC-------CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEE
Confidence 34567788899999994 44 67999999999999999987 455566665554 899999
Q ss_pred ECCCCc-EEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc---
Q 014125 181 FNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--- 255 (430)
Q Consensus 181 ~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--- 255 (430)
|+|++. +|+++ .||.|++|++......... ........+|...|.+++|+|+++.+|++++.||.|++||++++
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRV-IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGE-EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce-eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 999998 77755 8999999999874322111 11122345788899999999988889999999999999999987
Q ss_pred eeeEEeeccccCeEEEEEccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEccC
Q 014125 256 ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQD 333 (430)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 333 (430)
+....+..|...|++++|+|++. ++++++ .||.|++||++........+ ..|...|.+++|+|+++ +|++++.|
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCC
Confidence 56777888999999999999998 577777 99999999999854433333 46888999999999985 69999999
Q ss_pred CcEEEEEcCC--------------CCeecccccccCCeeEEEEcCCCc-EEEEeeCCc
Q 014125 334 GLVHIYDLQT--------------GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHR 376 (430)
Q Consensus 334 g~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~ 376 (430)
|.|+|||+.. .+.+..+.+|...|.+++|+|+++ +|++++.|+
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 9999999987 356777788999999999999999 888887533
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-35 Score=285.68 Aligned_cols=242 Identities=18% Similarity=0.273 Sum_probs=197.9
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----eeeeeecccccccccceEEEEECCCCcEEE
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (430)
...|...|++++|.|. ++.+|++|+.|++|++|++.+.. ....+..|.. .|.+++|+|++++|+
T Consensus 378 l~~H~~~V~~v~~~~~------~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 378 MRAHTDMVTAIATPID------NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFAL 446 (694)
T ss_dssp EECCSSCEEEEECCTT------CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEE
T ss_pred cccCCceeEEEEecCC------CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEE
Confidence 4578899999999442 35789999999999999997643 2344555544 899999999999999
Q ss_pred E-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccc
Q 014125 190 A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQE 265 (430)
Q Consensus 190 ~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~ 265 (430)
+ +.|+.|++||+.... ....+.+|...|.+++|+| ++..|++|+.|++|++||.......... .+|.
T Consensus 447 sgs~Dg~v~vwd~~~~~--------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGV--------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp EEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred EEeCCCcEEEEECCCCc--------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 5 589999999997631 2223467889999999999 6779999999999999998765443332 3688
Q ss_pred cCeEEEEEccCC--CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 266 GGVTHVQFSRDG--NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 266 ~~i~~~~~~~~~--~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
..|.+++|+|++ ..|++++ .|+.|++||+++..... .+ .+|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s-~d~~v~vwd~~~~~~~~-~~---~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSAS-WDKTVKVWNLSNCKLRS-TL---AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEE-TTSCEEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CcEEEEEEeCCCCcceEEEEe-CCCeEEEEECCCCcEEE-EE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999987 5788888 99999999999875332 22 57899999999999999999999999999999999
Q ss_pred CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
++.+..+.. ...|.+++|+|++.+|++++ ++.+++||.
T Consensus 593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~ 630 (694)
T 3dm0_A 593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630 (694)
T ss_dssp TEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred CceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence 998888774 46899999999999888776 455888853
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-35 Score=268.16 Aligned_cols=266 Identities=15% Similarity=0.213 Sum_probs=208.8
Q ss_pred eeecCCCeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEE-E
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-A 190 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~ 190 (430)
....|...|.+++| +|++ ++|++|+.||.|++||+.+++....+... .+...|.+++|+| ++.+|+ +
T Consensus 68 ~~~~h~~~v~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 68 TASPFDRRVTSLEW-------HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM---GPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp EECCCSSCEEEEEE-------CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC---STTCBEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEE-------CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC---CcCCceeEEEeCCCCCCEEEEE
Confidence 34467789999999 6677 89999999999999999998877766531 1233899999999 667777 4
Q ss_pred EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEE
Q 014125 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
+.|+.|++||++.. .. ..+. ....+...|.+++|+| ++.+|++|+.|+.|++||+ +++.+..+..|...|.+
T Consensus 138 ~~d~~i~iwd~~~~--~~---~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 138 SIRGATTLRDFSGS--VI---QVFA-KTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp ETTTEEEEEETTSC--EE---EEEE-CCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred eCCCEEEEEECCCC--ce---EEEe-ccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 58999999999741 11 1111 1234567899999999 6779999999999999999 57788888899999999
Q ss_pred EEEccCCC-EEEEEecCCCeEEEEeCCCCc---eEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCCC
Q 014125 271 VQFSRDGN-YLYTGGRKDPYILCWDLRKAV---QVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 271 ~~~~~~~~-~l~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
++|+|+++ +|++++ .|+.|++||+++.. ...... .|...|.+++|+| ++.+|++++.|+.|++||+++++
T Consensus 210 ~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 210 AEFNPRCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEECSSCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEECCCCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999 888888 99999999998732 222222 5788999999999 99999999999999999999998
Q ss_pred eeccccccc-------CCeeEEEEcCCCcEEEEee-CCceeeecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 346 WISGFQAAA-------DTVNGFSFHPFLPMAASSS-GHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 346 ~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~-~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
.+..+.+|. ..+. +.|+|++..++.+. .|+ .+ +++.|+.|++|++..++.+..+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg--------~~-s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDD--------QL-LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCT--------TT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred cccccccccccccccccceE-EeccCCCCceEEEecCCc--------cc-ccCCCCeEEEEecCCCceeeeecCC
Confidence 877776553 3444 57888877766543 222 22 6677888888888777777666653
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-34 Score=263.93 Aligned_cols=268 Identities=15% Similarity=0.269 Sum_probs=207.3
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++... ....|...+.+++|
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-----------------~~~~h~~~v~~~s~------- 197 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-----------------NMTSHSARVGSLSW------- 197 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------------EECCCSSCEEEEEE-------
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-----------------EEeCCCCceEEEee-------
Confidence 345788899999999999999999999999999998764322 23345678888887
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++..|++|+.|+.+++||..... .+..+..+.. .+..+.|+|++.++++ +.|+.+++|+.........
T Consensus 198 --~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~-----~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~--- 267 (420)
T 4gga_A 198 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--- 267 (420)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC---
T ss_pred --CCCEEEEEeCCCceeEeeecccceeeEEeccccc-----ceeeeeecCCCCeeeeeeccccceEEeeccccccce---
Confidence 46699999999999999987643 4455555554 8899999999999995 5899999999987533221
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEE--ecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-cCCCe
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPY 289 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~ 289 (430)
.......|...|.+++|+|.+..++++ |+.|++|++||+.+++....+..| ..+.++.|+|+++.+++++ ..|+.
T Consensus 268 -~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 268 -PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp -CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCC
T ss_pred -eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCE
Confidence 112235677889999999988888876 457999999999999998888754 6789999999999888764 36899
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
|++||+.+..... .+ .+|...|++++|+|+|++|++|+.|++|+|||+.+..+......+...+....+
T Consensus 346 I~iwd~~~~~~v~-~l---~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 346 LVIWKYPTMAKVA-EL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEECCCCcEEE-EE---cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 9999999875442 33 689999999999999999999999999999999887776666655554443333
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-35 Score=266.76 Aligned_cols=252 Identities=17% Similarity=0.271 Sum_probs=203.9
Q ss_pred cCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
.|...|++++|+|++++|++|+.||.|++||+.+++... ....|...|.+++| +
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~v~~~~~---------~ 185 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-----------------TMAGHQARVGCLSW---------N 185 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE---------E
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-----------------EecCCCCceEEEEE---------C
Confidence 389999999999999999999999999999998764322 22356689999999 3
Q ss_pred CceEEEEeCCCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 138 SCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+..|++++.||.|++||+. .+.....+..+.. .|.+++|+|++.+|++ +.|+.|++||++... ..
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------~~ 252 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--------PK 252 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------EE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------cc
Confidence 4699999999999999998 4556666666554 8999999999999995 589999999998632 11
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEec--CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-cCCCeEEE
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPYILC 292 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i 292 (430)
.....|...|.+++|+|++..++++++ .|+.|++||+++++.+..+. +...|.+++|+|+++++++++ ..||.|++
T Consensus 253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v 331 (401)
T 4aez_A 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331 (401)
T ss_dssp EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEE
T ss_pred EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEE
Confidence 223567888999999998888888876 89999999999999888886 667899999999999999853 27999999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
||+.+..... .....+|...|.+++|+|+|++|++++.||.|++|++.+++.+....
T Consensus 332 ~~~~~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 332 WSYSSSGLTK--QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEETTEEEE--EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EecCCcccee--EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9998864332 22235788999999999999999999999999999999988776543
No 91
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-37 Score=275.76 Aligned_cols=287 Identities=12% Similarity=0.113 Sum_probs=214.2
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
-...|.+++|||||+++||++.|++|+ |...++. + ..|...|++++| +|+|
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-------------------l-~gh~~~v~~V~F-------sPdg 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-------------------I-NCNSKNLFHVKE-------FPLE 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-------------------C-SSBGGGTEEEEE-------ECCC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce-------------------e-cCCCccEEEEEE-------CCCC
Confidence 357899999999999999999999999 6433321 1 246689999999 5566
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.++.+.+|+.... ..+... +...|.+++|+|+|..|+ ++.||.|++||... ....+...
T Consensus 65 -------~~~~~~~~~~~~~---~~~~~~----~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~~~ 124 (588)
T 2j04_A 65 -------FENKLDFELAQQN---GLLNSQ----PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLDSK 124 (588)
T ss_dssp -------CCCTTTTSCCCSS---CSSTTS----CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECCCS
T ss_pred -------CcceEEEEeCCCc---eEeecC----CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeeccCC
Confidence 4555555554322 222211 123899999999999999 55999999999532 11111100
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEEe----eccccCeEEEEEccCCCEEEEEecC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYVL----HGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
..-....+.+++|+| ++++|++|+.||+|++||+.++.. +..+ .+|...|.+++|+|+| +++++ .
T Consensus 125 ~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~ 200 (588)
T 2j04_A 125 GNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-S 200 (588)
T ss_dssp SCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-T
T ss_pred CccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-C
Confidence 000123599999999 778999999999999999998752 5665 5677899999999999 77787 8
Q ss_pred CCeEEEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE--
Q 014125 287 DPYILCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF-- 362 (430)
Q Consensus 287 d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-- 362 (430)
|+.|++||+.+.... ...+. .+|...|.+++|+ |.+||+++ ++.|++||+.+++......+|.+.|..++|
T Consensus 201 D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~ 275 (588)
T 2j04_A 201 NNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNH 275 (588)
T ss_dssp TCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETT
T ss_pred CCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeee
Confidence 999999999887531 11121 3577889999999 68999987 699999999988774444379999999999
Q ss_pred cCCCcEEEEeeCCceeeecCCCc-------cccccCCCcEEEEeecccc
Q 014125 363 HPFLPMAASSSGHRRFPVDDFED-------LHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~~~~-------l~~~~~d~~i~~w~~~~~~ 404 (430)
+|++..|++++.||. ++|..+. ..+++.|+.+++|+...+.
T Consensus 276 s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~ 323 (588)
T 2j04_A 276 EKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNE 323 (588)
T ss_dssp CSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTS
T ss_pred CCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCc
Confidence 999999999999999 9995432 2333348999999876554
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-35 Score=263.31 Aligned_cols=252 Identities=14% Similarity=0.168 Sum_probs=206.9
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc--CCceeeeeecccccccccceEEEEECCC--CcEEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF 189 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 189 (430)
....|...|.+++| +|++++|++++.||.|++||+. +++....+..|.. .|.+++|+++ +.+|+
T Consensus 6 ~~~~h~~~v~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 6 IANAHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILA 73 (379)
T ss_dssp CEEECCCCEEEEEE-------CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEE
T ss_pred EecCCcccEEEEEE-------cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEE
Confidence 34567789999999 7789999999999999999998 4455566665554 8999999977 88888
Q ss_pred -EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCce--eeEEeeccc
Q 014125 190 -AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNME--LLYVLHGQE 265 (430)
Q Consensus 190 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~ 265 (430)
++.|+.|++||+..... ........|...|.+++|+|+. +.+|++++.|+.|++||+++.. ....+..|.
T Consensus 74 s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EeccCCEEEEEEcCCCce------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 45899999999986421 1122235678899999999942 7799999999999999998873 445667899
Q ss_pred cCeEEEEEcc-------------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC---CCEEEE
Q 014125 266 GGVTHVQFSR-------------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS---GRHLGT 329 (430)
Q Consensus 266 ~~i~~~~~~~-------------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~ 329 (430)
..|.+++|+| ++.+|++++ .|+.|++||++..............|...|.+++|+|+ +.+|++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999999 689999999 99999999998775544344444678999999999999 899999
Q ss_pred EccCCcEEEEEcCCCC-----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 330 GGQDGLVHIYDLQTGK-----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 330 ~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
++.||.|++||++++. .+.....|...|.+++|+|++++|++++.||.+++|+..
T Consensus 227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999999999999864 233334588899999999999999999988877777643
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=279.48 Aligned_cols=277 Identities=12% Similarity=0.175 Sum_probs=203.5
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC-CCceEEEEe
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSCVFASTT 145 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~ 145 (430)
.|+|+++.+++++ .|+... +. ...+..+|...|.+++| +| ++.+|++|+
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g-~~----------------~~~~~~~h~~~V~~~~~-------s~~~~~~l~s~s 83 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG-KL----------------IATLMENEPNSITSSAV-------SPGETPYLITGS 83 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC-CE----------------EEEECTTTTSCEEEEEE-------ECSSSCEEEEEE
T ss_pred hcCCccccccccc------cccccc-eE----------------EeeeccCCCCceEEEEE-------CCCCCCEEEEec
Confidence 4678888887765 376432 11 11222457789999999 66 889999999
Q ss_pred CCCcEEEEeccC---Cceee-eeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCC--CCCccccc-----cc
Q 014125 146 RDHPIHLWDATT---GLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHR--PGRDFEKY-----ST 213 (430)
Q Consensus 146 ~dg~i~vwd~~~---~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~--~~~~~~~~-----~~ 213 (430)
.||.|++||+.+ +.... ... ..+...|.+++|+|++.+|++ +.|+.|++||+.. .+...... ..
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLT----YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEE----EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCceEEEeECcccccCcccceeee----ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 999999999877 43211 111 123348999999999998884 5899999999952 11111100 00
Q ss_pred ccCCCCCCCcceEEEE--EcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--cccCeEEEEEccCCCEEEEEecCCCe
Q 014125 214 LKGNKEGQAGIMSAIA--FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
+.....++...+.++. ++| ++.++++|+.|+.|++||+++++.+..+.. |...|++++|+|++++|++++ .||.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~ 237 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGI 237 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSC
T ss_pred EEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCe
Confidence 1000011445677776 456 677999999999999999999999999987 889999999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcC----CCCEEEEEccCCcEEEEEcCCCCeeccccc-------------
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP----SGRHLGTGGQDGLVHIYDLQTGKWISGFQA------------- 352 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 352 (430)
|++||+++..... .+. ..|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+.+
T Consensus 238 i~iwd~~~~~~~~-~~~--~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 238 IDIWDIRFNVLIR-SWS--FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp EEEEETTTTEEEE-EEB--CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred EEEEEcCCccEEE-EEe--cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 9999999864332 221 25667899996664 678999999999999999999887666654
Q ss_pred -------------ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 -------------AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 -------------~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...|++++|+ ++++|++++.|+.|++|+.
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 44557777887 6678888887777777754
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=264.72 Aligned_cols=293 Identities=10% Similarity=0.044 Sum_probs=218.3
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCC---Ccccccccccc-----------------cccC------------
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG---ISYDVNACSLA-----------------KDQD------------ 108 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~-----------------~~~~------------ 108 (430)
.++.+++|+|+|++|+++ .++.|++||+.+++ ........... ....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977665 57799999998887 33222211100 0000
Q ss_pred --------cccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEEEEecc--CCceeeeeecccccccccceE
Q 014125 109 --------SYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAF 177 (430)
Q Consensus 109 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~ 177 (430)
.........+...|.+++| +|++++| ++++.||.|++||+. +++....+..+. +...|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCce
Confidence 0000001134457999999 7789886 899999999999999 888777776422 223899
Q ss_pred EEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCC
Q 014125 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 178 ~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~ 254 (430)
+++|+|++.+|+++ .++.|++|++....... .......+|...|++++|+|+ ++.+|++|+.|+.|++||+++
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEK----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCCCSS----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCccccc----ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999999855 88999999997643211 012234578889999999994 177999999999999999999
Q ss_pred ceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc---------------------cCCc
Q 014125 255 MELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS---------------------SEHT 312 (430)
Q Consensus 255 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------~~~~ 312 (430)
++.+.. +.+|...|.+++|+ ++++|++++ .|+.|++||++++.......... ....
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 888776 56899999999999 999999999 99999999999875443221100 0234
Q ss_pred cceEEEEEcCCCCEEEEEc-cCCcEEEEEc--CCC---CeecccccccCCeeEEEEcCCCcEEEEe
Q 014125 313 NQRILFDIEPSGRHLGTGG-QDGLVHIYDL--QTG---KWISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
..+..++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++ ++++.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence 5789999999999999998 8999999999 555 566777777 889999999954 44444
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.2e-35 Score=265.63 Aligned_cols=280 Identities=16% Similarity=0.161 Sum_probs=210.6
Q ss_pred cCCCCCcceeeecceeecccCCCceeEEEECcC----C---ceEEEecCCCeEEEEeCCCCCCcccccccccccccCccc
Q 014125 39 FDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD----G---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (430)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----~---~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 111 (430)
|+........++.....+.+|...|++++|+|+ + ++|++++.||.|++|++.++..... ..
T Consensus 41 w~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------~~ 108 (397)
T 1sq9_A 41 WDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK------------VI 108 (397)
T ss_dssp EESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC------------EE
T ss_pred EECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc------------cc
Confidence 443333322333456677899999999999999 9 9999999999999999986543100 00
Q ss_pred ceeeecC-----CCeeeeeeeccccCccCCCCce-EEEEeCCCcEEEEeccC------Cceee-----eeecc--ccccc
Q 014125 112 ASLVVTE-----GESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHLWDATT------GLLRC-----TYRAY--DAVDE 172 (430)
Q Consensus 112 ~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~------~~~~~-----~~~~~--~~~~~ 172 (430)
......+ ...|.+++|++.. .|++.+ |++++.||.|++||+.+ ++.+. .+... ....+
T Consensus 109 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 109 FEKLDLLDSDMKKHSFWALKWGASN---DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185 (397)
T ss_dssp EEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred ceeecccccccCCCcEEEEEEeecc---CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC
Confidence 1122223 4789999994210 068889 99999999999999998 66555 44320 00112
Q ss_pred ccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCC---C---CcceEEEEEcCCCCceEEEecCC-
Q 014125 173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG---Q---AGIMSAIAFSPTHTGMLAIGSYS- 244 (430)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d- 244 (430)
...|.+++|+|++ +++++ .|+.|++||++.... ...... | ...+.+++|+| ++.+|++++.|
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~ 255 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNNGTVQISELSTLRP--------LYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSN 255 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--------EEEEECCC---CCCCCEEEEEECS-STTEEEEEEEET
T ss_pred CCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--------eEEEeccccccccCCccceEEECC-CCCEEEEEecCC
Confidence 3389999999999 87755 899999999986321 111233 6 78899999999 67799999999
Q ss_pred --CeEEEEEcCCceeeEEeec-------------cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeec--
Q 014125 245 --QTSAIYREDNMELLYVLHG-------------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR-- 307 (430)
Q Consensus 245 --g~v~~~d~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~-- 307 (430)
+.|++||+++++.+..+.. |...|.+++|+|++++|++++ .||.|++||+++..... .+..
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~ 333 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERIT-TLNMHC 333 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEE-EEECCG
T ss_pred CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceeE-EEeccc
Confidence 9999999999999999988 999999999999999999999 99999999999875433 3320
Q ss_pred -ccCC---------------ccceEEEEEcCCC----------CEEEEEccCCcEEEEEcCCCC
Q 014125 308 -SSEH---------------TNQRILFDIEPSG----------RHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 308 -~~~~---------------~~~v~~~~~~~~~----------~~l~~~~~dg~i~vwd~~~~~ 345 (430)
...| ...|.+++|+|++ ++|++++.||.|++|++.+++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 0044 8899999999998 799999999999999998764
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-34 Score=254.06 Aligned_cols=283 Identities=14% Similarity=0.177 Sum_probs=226.1
Q ss_pred cceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE
Q 014125 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (430)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (430)
.......|...|.+++| +|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++++|++
T Consensus 24 ~~~~l~~h~~~v~~~~~-------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKY-------NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-----TIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EEEEEECCSSCEEEEEE-------CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEE
T ss_pred ccEEEEEeeceEEEEEE-------cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-----cEEEEEEcCCCCEEEE
Confidence 33455678899999999 77899999999999999999999999988887665 8999999999999984
Q ss_pred -EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCce--------
Q 014125 191 -GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME-------- 256 (430)
Q Consensus 191 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~-------- 256 (430)
+.|+.|++||+...... ... .+...+.+++|+| ++..+++++.+ +.|++||+....
T Consensus 92 ~~~dg~i~iwd~~~~~~~----~~~-----~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCV----ATW-----KSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EETTTEEEEEETTTCCEE----EEE-----ECSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EeCCCeEEEEECCCCcEE----EEe-----ecCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 58999999999864221 111 1566799999999 67788888888 999999987653
Q ss_pred ---eeEEeecccc--CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 257 ---LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 257 ---~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
....+..|.+ .+.+++|+|++++|++++ .||.|++||+++.......+ ..|...|.+++|+|++++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECCCCCEEEEec
Confidence 3344455655 899999999999999999 99999999999854444343 46788999999999999999999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.||.|++||+++++.+..+. +...+..++|+|+++++++++.++...+|.... ......+++|+...++.+..+.+
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA---NEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----------------CEEEEEETTTCCEEEEEEC
T ss_pred CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEec---CCCcceeEEEecCCCcchhheec
Confidence 99999999999999988887 778999999999999999999988777664322 22344789999998888888887
Q ss_pred CCcceeeeeccCc
Q 014125 412 INGCEFNCQSEHE 424 (430)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (430)
|.+ .+.++...+
T Consensus 314 ~~~-~v~~~~~s~ 325 (369)
T 3zwl_B 314 HFG-PLNTVAISP 325 (369)
T ss_dssp CSS-CEEEEEECT
T ss_pred ccC-cEEEEEECC
Confidence 766 455555443
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.2e-35 Score=259.99 Aligned_cols=256 Identities=12% Similarity=0.064 Sum_probs=193.8
Q ss_pred ecccCCCceeEEEECcCCceEEEe-----------cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTS-----------SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~-----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 123 (430)
.+.+|.+.|.++++++ +.+++| +.|+.+++|++............. .......+...+.
T Consensus 68 ~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 137 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSV--------DFDASTNADDYTK 137 (365)
T ss_dssp ECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEE--------CSSCCCCTTCCEE
T ss_pred EccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeee--------ceeecCCcccCEE
Confidence 5788999999987754 555554 457789999876543211110000 0001112334578
Q ss_pred eeeeccccCccCCCCceEEEE--eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 014125 124 DFCWFPHMSASDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~ 201 (430)
+++| +|||++++++ +.|++|++||+.+++.+..+... . .|.+++|+|+|++++++.++.+++|+.
T Consensus 138 ~v~f-------SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-~-----~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 138 LVYI-------SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-G-----EVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp EEEE-------CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-S-----CCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred EEEE-------cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-C-----ceEEEEEccCCceEEeccceeEEEEEe
Confidence 8888 7899998754 47899999999999988877532 2 799999999999999887888888887
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCcee----eEEeeccccCeEEEEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMEL----LYVLHGQEGGVTHVQF 273 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~----~~~~~~~~~~i~~~~~ 273 (430)
..+... .......|...+.+++|+| ++..+++++.++ .+++|++..... ...+.+|...|++++|
T Consensus 205 ~~~~~~------~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 205 VTGSCI------ARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp TTCCEE------EEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred ccCcce------eeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 664321 1122356788899999999 667888888776 688899876543 3456788899999999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
+|+|++|++++ .|+.|+|||+++++..... ..+|...|++++|+|||++||+|+.|++|+|||+...
T Consensus 278 Spdg~~lasgs-~D~~V~iwd~~~~~~~~~~---~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLAS-NDNSIALVKLKDLSMSKIF---KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEE-TTSCEEEEETTTTEEEEEE---TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEc-CCCEEEEEECCCCcEEEEe---cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999 9999999999987543322 2579999999999999999999999999999999643
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-35 Score=268.50 Aligned_cols=280 Identities=16% Similarity=0.198 Sum_probs=212.1
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEE-Ec
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GY 192 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~ 192 (430)
...|...|++++|+|. ++++||+|+.||.|+|||+.+++....+... .|...|.+++|+| ++.+|++ +.
T Consensus 115 ~~~~~~~V~~l~~~P~------~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~---gH~~~V~~l~f~p~~~~~l~s~s~ 185 (435)
T 4e54_B 115 AAPFDRRATSLAWHPT------HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI---GAGGSITGLKFNPLNTNQFYASSM 185 (435)
T ss_dssp EEECSSCEEEEEECSS------CTTCEEEEETTSCEEEECSSCCSCCEEECCC---SSSCCCCEEEECSSCTTEEEEECS
T ss_pred CCCCCCCEEEEEEeCC------CCCEEEEEeCCCEEEEEECCCCCceeEEEcc---CCCCCEEEEEEeCCCCCEEEEEeC
Confidence 3456678999999553 5678999999999999999887655544322 2334899999998 5778885 58
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|++|++||++... .. .. .....+...+.+++|+| ++.+|++|+.||.|++||++ ++.+..+.+|...|++++
T Consensus 186 D~~v~iwd~~~~~--~~---~~-~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 186 EGTTRLQDFKGNI--LR---VF-ASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp SSCEEEEETTSCE--EE---EE-ECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEE
T ss_pred CCEEEEeeccCCc--ee---EE-eccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeee
Confidence 9999999997521 11 11 11133445688999999 67799999999999999996 456677889999999999
Q ss_pred EccCCC-EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSRDGN-YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~~~~-~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
|+|++. +|++++ .|+.|++||+++..... .+....+|...|++++|+|+|.+|++++.||.|+|||+.+++....+.
T Consensus 258 ~~p~~~~~~~s~s-~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 258 LNPCCDWFLATAS-VDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp ECTTCSSEEEEEE-TTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred ecCCCceEEEEec-CcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 999987 566677 99999999998764322 222335788999999999999999999999999999999998877776
Q ss_pred cccC------CeeEEEEcCCCcEEEEeeC-CceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeee
Q 014125 352 AAAD------TVNGFSFHPFLPMAASSSG-HRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNC 419 (430)
Q Consensus 352 ~~~~------~v~~~~~~~~~~~l~s~~~-d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 419 (430)
.|.. .+....|+|++.++++++. |+.+. +.++.+++.|++|+...++.+..+.+.....+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK------SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC------CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeE------EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE
Confidence 6543 3456789999998888754 33333 2344567789999999988887765433323343
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=284.01 Aligned_cols=259 Identities=18% Similarity=0.242 Sum_probs=206.6
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. .........|..+|.+++|+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------~~~~~~l~~h~~~V~~l~~s~---- 63 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH---- 63 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECC----
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------CccceeccCCcCceEEEEecC----
Confidence 4678999999999999999999999999999999986321 112223445778999999944
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
..++++|++|+.||.|++||+.+++ ....+..+.. .|.+++|+|+ +..++ ++.||.|++||++......
T Consensus 64 -~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~-----~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 64 -PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp -TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred -CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC-----CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 2238999999999999999999986 4455554444 8999999999 88888 4589999999998753211
Q ss_pred cccccccCCCCCCCcceEEEEEcCC------------CCceEEEecCCCeEEEEEcCCc----eeeEEeeccccCeEEEE
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~ 272 (430)
.....+|...|.+++|+|. ++.++++|+.||.|++||++++ .....+.+|...|++++
T Consensus 138 ------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 138 ------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp ------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred ------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 1123567889999999995 3779999999999999999876 55677788999999999
Q ss_pred EccC---CCEEEEEecCCCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 273 FSRD---GNYLYTGGRKDPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 273 ~~~~---~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|+|+ +.+|++++ .||.|++||+++.... .........|...+++++|+|+|++|++|+.||.|++|++.++
T Consensus 212 ~sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 212 WSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ECCCCSSSEEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eccCCCCCCEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999 89999999 9999999999876321 1122333567889999999999999999999999999999853
No 100
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.5e-34 Score=260.79 Aligned_cols=294 Identities=14% Similarity=0.113 Sum_probs=199.7
Q ss_pred eeEEEE---CcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc--------
Q 014125 63 LKGIKW---SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM-------- 131 (430)
Q Consensus 63 v~~~~~---sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 131 (430)
..++.| +|++..|++++.|+.|.+|+.......... ...........++.++..+.|.+..
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGST--------GLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCC--------SEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCccccc--------ccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 445666 444445555666888999986533211100 0011112233444556666664421
Q ss_pred -----CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC--------CCcEEE-EEcCCeEE
Q 014125 132 -----SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP--------TGTKIF-AGYNKSVR 197 (430)
Q Consensus 132 -----~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~-~~~d~~i~ 197 (430)
..+++++.+|++++.|++|++||+.++.............|...|.+++|+| ++++|+ ++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 1224567789999999999999999887654433333334556999999998 788888 55999999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-----------------
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----------------- 260 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----------------- 260 (430)
|||+...... .....|...+.+++|+|++.++|++|+.|++|++||+++++....
T Consensus 170 ~Wd~~~~~~~--------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 170 IWRLTDEGPI--------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp EEEEETTEEE--------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred EEECCCCcee--------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999764221 112456778999999997777999999999999999987654322
Q ss_pred --------eeccccCeEEEEEc-cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccc-----------------
Q 014125 261 --------LHGQEGGVTHVQFS-RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQ----------------- 314 (430)
Q Consensus 261 --------~~~~~~~i~~~~~~-~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----------------- 314 (430)
..+|...+.++.|+ |+++.|++++ .|+.+++||+....... .+ ..+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~-~l---~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMC-KSGAWLRWNLFANNDYN-EI---SDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEEC-TTSEEEEEEC-----------------------CCSCSEEEECSSC
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEe-CCCCEEEEECccCCCCc-eE---eeecCccccEEEccccccccccC
Confidence 13466788899986 7999999999 99999999998653221 11 111111
Q ss_pred -eEEEEEcC--CCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 315 -RILFDIEP--SGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 315 -v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
.....++| ++.++++|+.||.|++||+.+++.+..+..|..+|.+++|+|+|++||+++.+|.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 12233443 3456788999999999999999998888889999999999999999999986543
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.7e-34 Score=254.97 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=202.7
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEE-EcC
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (430)
.|..+|.+++| +|++++|++++.|+.|++||+.+++ ....+..+.. .|.+++|+|++.+|++ +.|
T Consensus 6 ~~~~~i~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCC
Confidence 36689999999 7789999999999999999999987 6777766554 8999999999999985 589
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee----eEEeeccccCeE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVT 269 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~ 269 (430)
+.|++||+..... ........|...+.+++|+| ++.+|++++.|+.|++||++.+.. ......|...|.
T Consensus 74 g~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 74 RNAYVWTLKGRTW------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp SCEEEEEEETTEE------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred CeEEEEECCCCee------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 9999999966321 01111246778899999999 677999999999999999988762 233356889999
Q ss_pred EEEEccCCCEEEEEecCCCeEEEEeCC------------------CCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 270 HVQFSRDGNYLYTGGRKDPYILCWDLR------------------KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+++|+|++++|++++ .||.|++||++ .. ..... ...|...+.+++|+|++++|++++
T Consensus 147 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFE---SSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEE---CCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEcCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchh-hheEe---cCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999999999999 99999999964 22 22222 247888999999999999999999
Q ss_pred cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 332 QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.||.|++||+++++.+..+..|..+|.+++|+|++.+|+++ .|+.+++|+.
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 99999999999999999999999999999999999988887 7777777654
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=256.54 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=205.0
Q ss_pred ccCCCceeEEEECcC---CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 57 SIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++. .......|...|.+++|.+. .+
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~v~~~~~~~~-~~ 124 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------------PVYSVKGHKEIINAIDGIGG-LG 124 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------------CSEEECCCSSCEEEEEEESG-GG
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------------cEEEEEecccceEEEeeccc-cc
Confidence 379999999999998 69999999999999999987641 11223356788999988653 24
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEE----ECCCCcEEEEE-cCCeEEEEEcCCCCCc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVA----FNPTGTKIFAG-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~-~d~~i~v~d~~~~~~~ 207 (430)
++|++++|++++.||.|++||+.+++ ....+..+.. .....+.+++ |+|++.+++++ .|+.|++||++....
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 202 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL- 202 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC-CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-
Confidence 58899999999999999999999887 5666655433 1223677887 78899999955 889999999987421
Q ss_pred ccccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCceeeEEee-----ccccCeEEEEEccCCC-E
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGN-Y 279 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~ 279 (430)
.....|...+.+++|+|. ++..+++++.||.|++||+++++....+. .|...|++++|+|+++ +
T Consensus 203 --------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 203 --------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp --------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred --------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 111355678999999994 45689999999999999999877655544 8999999999999998 7
Q ss_pred EEEEecCCCeEEEEeCCCCceEE---------------EEeecccCCccceEEEEEcCCCCEEE-EEccCCcEEEEEcCC
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVV---------------YKLYRSSEHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQT 343 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~ 343 (430)
|++++ .||.|++||++...... ..+.....|...|.+++|+|++++|+ +++.||.|++||+.+
T Consensus 275 l~~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 275 FLTAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 88888 99999999998653221 22333467889999999999999998 899999999999987
Q ss_pred CCe
Q 014125 344 GKW 346 (430)
Q Consensus 344 ~~~ 346 (430)
.+.
T Consensus 354 ~~~ 356 (357)
T 3i2n_A 354 LNK 356 (357)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.9e-33 Score=246.02 Aligned_cols=254 Identities=23% Similarity=0.346 Sum_probs=198.4
Q ss_pred ceeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
..+.+.+|.+.|++++|+|+|++|++|+.|+.|++|+...... ......+...+....+
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~---- 136 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----------------TRRFVGHTKDVLSVAF---- 136 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------EEEEECCSSCEEEEEE----
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce-----------------eeeecCCCCceeEEEE----
Confidence 3567889999999999999999999999999999999876432 1222334456677777
Q ss_pred CccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCC--cEEE-EEcCCeEEEEEcCCCCCcc
Q 014125 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIF-AGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~-~~~d~~i~v~d~~~~~~~~ 208 (430)
++++..|++++.|+.+++||+.......... ..+...+..++|++++ .+++ ++.|+.|++||++..
T Consensus 137 ---~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---- 205 (340)
T 4aow_A 137 ---SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---- 205 (340)
T ss_dssp ---CTTSSCEEEEETTSCEEEECTTSCEEEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----
T ss_pred ---eecCccceeecCCCeEEEEEeCCCceEEEEe----ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC----
Confidence 6688999999999999999987654432211 1223378899998875 4455 558999999999863
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
.......+|...|++++|+| ++.+|++|+.||.|++||+++.+.+..+.. ...|.+++|+|++.++ +++ .|+
T Consensus 206 ----~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~-~d~ 277 (340)
T 4aow_A 206 ----KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAA-TGP 277 (340)
T ss_dssp ----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEE-ETT
T ss_pred ----ceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-ecc-CCC
Confidence 22233467889999999999 677999999999999999999999888874 4689999999988655 555 699
Q ss_pred eEEEEeCCCCceEEEEe-----ecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 289 YILCWDLRKAVQVVYKL-----YRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
.|++||+++........ .....|...|++++|+|+|++|++|+.||.|+|||+.+|+
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999998764332111 1224678899999999999999999999999999999885
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=255.48 Aligned_cols=268 Identities=13% Similarity=0.107 Sum_probs=198.7
Q ss_pred EEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 66 ~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
..+.+++++|++|+.||+|++||+.+++....+. ...|.++.|+ |+ +++++
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-------------------~~~v~~~~~~-------~~---~~s~s 92 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-------------------TPNPRTGGEH-------PA---IISRG 92 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-------------------EECCCTTCCC-------CS---EEEEC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-------------------cCCceeeeeC-------Cc---eEEec
Confidence 3455688999999999999999998765432211 2467777774 44 99999
Q ss_pred CCCcEEEEecc---------CCceeeeeecccccccccceEEEEECC--CCcEEE-EEcCCeEEEEEcCCCCCccccccc
Q 014125 146 RDHPIHLWDAT---------TGLLRCTYRAYDAVDEITAAFSVAFNP--TGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 146 ~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
.|++|++|+.. +++.+..+.. .+...|.+++|+| ++.+++ ++.|+.|++||++.... .
T Consensus 93 ~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~----- 162 (343)
T 3lrv_A 93 PCNRLLLLYPGNQITILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-Y----- 162 (343)
T ss_dssp STTEEEEEETTTEEEEEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-E-----
T ss_pred CCCeEEEEEccCceEEeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-E-----
Confidence 99999999765 3333333331 1223799999999 999999 55899999999986432 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee-EEeec-cccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-YVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
......+...+.+++|+| ++.+|++|+.||.|++||+++++.. ..+.. |.++|++++|+|++.+|++++ .+ .|+
T Consensus 163 -~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~ 238 (343)
T 3lrv_A 163 -IVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVV 238 (343)
T ss_dssp -EEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEE
T ss_pred -EEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEE
Confidence 111123455699999999 6779999999999999999999877 77887 999999999999999999998 55 999
Q ss_pred EEeCCCCceEEEEeecccCCccce--EEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCeecccccccCCeeEEEEcC---C
Q 014125 292 CWDLRKAVQVVYKLYRSSEHTNQR--ILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKWISGFQAAADTVNGFSFHP---F 365 (430)
Q Consensus 292 i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~ 365 (430)
+||+++..... .+.....+...+ .+++|+|+|++|++++. |+.|++|++.+....... .++..+.|.| +
T Consensus 239 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCB-SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcce-eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 99999875321 111111122233 46999999999999988 999999999766543322 5678889998 8
Q ss_pred CcEEEEeeCCceeeec
Q 014125 366 LPMAASSSGHRRFPVD 381 (430)
Q Consensus 366 ~~~l~s~~~d~~~~vw 381 (430)
...+++++.|+.+.++
T Consensus 314 ~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCEEEEEEETTEEEEE
T ss_pred cceeEEEecCCceEEE
Confidence 8899999887777665
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=263.32 Aligned_cols=257 Identities=11% Similarity=0.113 Sum_probs=194.4
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-----------eeeeeeccccc-------ccccceEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----------LRCTYRAYDAV-------DEITAAFS 178 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~-------~~~~~v~~ 178 (430)
.+...|.+++| +|++.+|++|+.||.|++||+.+++ ....+..|... .....|.+
T Consensus 26 ~~~~~V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 26 AEADIISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp CGGGSEEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred cccCcEEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEE
Confidence 45579999999 7789999999999999999998876 35566655410 00137999
Q ss_pred EEECCCC--cEEE-EEcCCeEEEEEcCCCCCccccc--------------------------------ccccCCCCCCCc
Q 014125 179 VAFNPTG--TKIF-AGYNKSVRVFDVHRPGRDFEKY--------------------------------STLKGNKEGQAG 223 (430)
Q Consensus 179 ~~~~~~~--~~l~-~~~d~~i~v~d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 223 (430)
++|+|++ ..++ ++.|+.|++||+.......... ........+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 9999998 5666 5699999999987522100000 000011357889
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeE-------EeeccccCeEEEEEccCC-CEEEEEecCCCeEEEEe
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLY-------VLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWD 294 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i~d 294 (430)
.|.+++|+| ++.+|++| .|+.|++||+++. +... .+..|...|++++|+|++ .+|++++ .||.|++||
T Consensus 179 ~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 255 (447)
T 3dw8_B 179 HINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRLCD 255 (447)
T ss_dssp CCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEEEE
T ss_pred ceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEEEE
Confidence 999999999 67788888 7999999999844 4443 255788999999999998 8999999 999999999
Q ss_pred CCCCceEEEEeecccCCcc------------ceEEEEEcCCCCEEEEEccCCcEEEEEcCC-CCeecccccccCC-----
Q 014125 295 LRKAVQVVYKLYRSSEHTN------------QRILFDIEPSGRHLGTGGQDGLVHIYDLQT-GKWISGFQAAADT----- 356 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~----- 356 (430)
+++.............|.. .|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence 9987531000111133443 8999999999999999999 9999999997 8888888888642
Q ss_pred ----------eeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 357 ----------VNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 357 ----------v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+..++|+|++++|++++.|+.|++|+..
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 2349999999999999988888777654
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-33 Score=257.40 Aligned_cols=266 Identities=16% Similarity=0.277 Sum_probs=204.8
Q ss_pred eecccCCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
....+|.+.|++++|+|+ +.+||+++.||.|++|++........ .............|...|.+++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~----- 189 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------PSGECQPDLRLRGHQKEGYGLSW----- 189 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------TTCCCCCSEEEECCSSCCCCEEE-----
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------ccccCCCcEEecCCCCCeEEEEe-----
Confidence 345689999999999997 78999999999999999975321100 00011222344567889999999
Q ss_pred ccCCCCc-eEEEEeCCCcEEEEeccCCce-------eeeeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcC
Q 014125 133 ASDPTSC-VFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVH 202 (430)
Q Consensus 133 ~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~d~~i~v~d~~ 202 (430)
+|++. +|++|+.||.|++|++.++.. ...+.. +...|.+++|+| ++.++++ +.|+.|++||++
T Consensus 190 --~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 190 --NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp --CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred --CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-----CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 55676 999999999999999987432 222333 334899999999 5667764 589999999998
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCC-EE
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN-YL 280 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l 280 (430)
..... ........|...|++++|+|++..++++|+.||.|++||+++ ..++..+..|...|.+++|+|+++ +|
T Consensus 263 ~~~~~-----~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 263 NNNTS-----KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp CSCSS-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCCC-----cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 74311 111122467888999999997777899999999999999998 567888888999999999999996 57
Q ss_pred EEEecCCCeEEEEeCCCCceE----------EEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCCC
Q 014125 281 YTGGRKDPYILCWDLRKAVQV----------VYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 344 (430)
++++ .|+.|++||+...... ...+....+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 338 ~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 338 ASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7777 9999999999873210 012233367888999999999998 8999999999999998753
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.6e-33 Score=249.88 Aligned_cols=250 Identities=12% Similarity=0.080 Sum_probs=201.9
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCc-EEEE-E
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA-G 191 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~ 191 (430)
.|...|.+++| +|++.+|++++.||.|++|++.++. ....+..+. ..|.+++|+|++. +|++ +
T Consensus 9 ~h~~~v~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 9 APKDYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp CCSSCEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEESSSEEEEEEE
T ss_pred CCCCcEEEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC-----CceEEEEECCCCCcEEEEEc
Confidence 57789999999 5678999999999999999999887 223333333 3899999999999 7874 5
Q ss_pred cCCeEEEEEc-CCCCCcccccccccCCCCC--CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC---------ceeeE
Q 014125 192 YNKSVRVFDV-HRPGRDFEKYSTLKGNKEG--QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---------MELLY 259 (430)
Q Consensus 192 ~d~~i~v~d~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~---------~~~~~ 259 (430)
.|+.|++||+ ..... ....+ |...|.+++|+| +.++++++.|+.|++||+++ ++.+.
T Consensus 77 ~dg~i~~wd~~~~~~~---------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF---------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp TTSCEEEECSSSSSSE---------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CCCeEEEEEeccCCce---------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 8999999999 65321 12245 888999999999 66999999999999999988 77676
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC-CceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEE
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK-AVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVH 337 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 337 (430)
.+. |...|.+++|+|++ +++++ .|+.|++||+++ ........ ...+...+.+++|+| +++++++++.||.|+
T Consensus 146 ~~~-~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 219 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTIE--ESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp SSS-SCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCCCEEE--ECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred EEe-eCCceEEEEecCCc--EEEEe-CCCeEEEEECCccccccceee--ecCCCCceeEEEECCCCCCEEEEEecCCcEE
Confidence 666 88999999999987 88888 899999999998 54322121 146778899999999 999999999999999
Q ss_pred EEEcCCC------CeecccccccC---------CeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecc
Q 014125 338 IYDLQTG------KWISGFQAAAD---------TVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 338 vwd~~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
+|+++.. +....+..|.. .|.+++|+|++++|++++.| |.|++|++..
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------------g~i~vwd~~~ 282 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-----------------GIISCWNLQT 282 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-----------------SCEEEEETTT
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-----------------ceEEEEcCcc
Confidence 9999887 77778887765 99999999999999999854 5555555555
Q ss_pred cccccccCCC
Q 014125 403 ASMMENADGI 412 (430)
Q Consensus 403 ~~~~~~~~~~ 412 (430)
++.+..+.+|
T Consensus 283 ~~~~~~~~~~ 292 (342)
T 1yfq_A 283 RKKIKNFAKF 292 (342)
T ss_dssp TEEEEECCCC
T ss_pred HhHhhhhhcc
Confidence 5555555555
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=239.97 Aligned_cols=240 Identities=18% Similarity=0.271 Sum_probs=201.4
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
....|...|.+++| | ++.+|++++.||.|++||+.+++....+..+.. .|.+++|+|++.++++ +.
T Consensus 13 ~l~~h~~~v~~~~~-~-------~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-V-------DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG-----FLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp EECCCSSCEEEEEE-E-------ETTEEEEEETTSEEEEEEESSSEEEEEEEECSS-----CEEEEEEETTTTEEEEEET
T ss_pred HhhCCCCCcEEEEe-c-------CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCc-----cEEEEEECCCCCEEEEecC
Confidence 44567889999998 5 577899999999999999999888888777655 8999999999999995 59
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
|+.|++|++...... .......+|...|.+++|+ +.++++++.|+.|++|| .++....+..|...+.+++
T Consensus 80 dg~i~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 80 DTMINGVPLFATSGE-----DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp TSCEEEEETTCCTTS-----CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred CCeEEEEEeeecCCC-----CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 999999999764321 1222346788899999994 44899999999999999 6777888888999999999
Q ss_pred Ecc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
|+| ++..+++++ .|+.|++||... ...... ..+...+.+++|+|++. +++++.||.|++||+++++.+..+.
T Consensus 150 ~~~~~~~~l~~~~-~d~~i~i~d~~~---~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 150 VVSFSENKFLTAS-ADKTIKLWQNDK---VIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEETTTTEEEEEE-TTSCEEEEETTE---EEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EccCCCCEEEEEE-CCCCEEEEecCc---eEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 998 899999999 999999999432 222221 33788999999999988 9999999999999999999999999
Q ss_pred cccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 352 AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+|...|.+++|+|++ .|++++.|+.+++|+..
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred cCCceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence 999999999999999 68888877777777643
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-32 Score=252.41 Aligned_cols=229 Identities=19% Similarity=0.311 Sum_probs=194.2
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCe
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKS 195 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~ 195 (430)
.+...|.++.| ++++|++|+.||.|++||+.+++....+..+.. .|.+++| ++.++++ +.||.
T Consensus 131 ~~~~~v~~~~~---------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~--~~~~l~sg~~dg~ 194 (435)
T 1p22_A 131 ETSKGVYCLQY---------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDST 194 (435)
T ss_dssp SSCCCEEEEEC---------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSC
T ss_pred CCCCcEEEEEE---------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-----cEEEEEE--CCCEEEEEcCCCe
Confidence 34567888876 688999999999999999999999888887665 8999998 6778874 58999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee---EEeeccccCeEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLHGQEGGVTHVQ 272 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~---~~~~~~~~~i~~~~ 272 (430)
|++||+.++. ......+|...|.+++|++ ..+++|+.||.|++||++++... ..+.+|...|.+++
T Consensus 195 i~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 195 VRVWDVNTGE--------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp EEEEESSSCC--------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred EEEEECCCCc--------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence 9999998742 2222357888999999975 39999999999999999987654 66778999999999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
| ++++|++++ .||.|++||+++..... .+ ..|...+.+++++ +.++++|+.||.|++||+++++.+..+.+
T Consensus 264 ~--~~~~l~s~~-~dg~i~vwd~~~~~~~~-~~---~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 334 (435)
T 1p22_A 264 F--DDKYIVSAS-GDRTIKVWNTSTCEFVR-TL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 334 (435)
T ss_dssp E--ETTEEEEEE-TTSEEEEEETTTCCEEE-EE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred e--CCCEEEEEe-CCCeEEEEECCcCcEEE-EE---cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeC
Confidence 9 788999999 99999999999875432 22 4688899999984 68999999999999999999999999999
Q ss_pred ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 353 AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 353 ~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
|...|.+++| ++.+|++++.||.|++||.
T Consensus 335 h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred CcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 9999999999 7889999998777777753
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=253.92 Aligned_cols=272 Identities=11% Similarity=0.076 Sum_probs=204.0
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|...|++++|+|+| .++.+.+|+.+.... ....+...|.+++|
T Consensus 46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~-------------------~~~~~~~~V~~vaw------ 93 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL-------------------LNSQPVCYPRVCKP------ 93 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS-------------------STTSCSCCEEEEEE------
T ss_pred ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE-------------------eecCCCCcEEEEEE------
Confidence 3447999999999999999 455555555432211 11123578999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC---ccc
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR---DFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~---~~~ 209 (430)
||+|..||+++.||.|++||... .+..+. +........+.+++|+|+|++|++ +.||+|++||+..+.. .+.
T Consensus 94 -SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 94 -SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp -CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred -CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 78999999999999999999544 444444 332112235899999999999995 5899999999987421 001
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee---eEEe-eccccCeEEEEEccCCCEEEEEec
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVL-HGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~---~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
....+.....+|...|.+++|+|++ +++++.|++|++||+.+++. ...+ .+|...|.+++|+ |+.|++++
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-
T ss_pred eeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-
Confidence 2233333446788999999999954 78888999999999988763 3456 4788899999999 68888886
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEE--cCCCCEEEEEccCCcEEEEEcCC--------------------
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI--EPSGRHLGTGGQDGLVHIYDLQT-------------------- 343 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~-------------------- 343 (430)
++.|++||+.+....... .+|...+..++| +|++..|+++++||. ++|..+.
T Consensus 244 -~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW 317 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKW 317 (588)
T ss_dssp -SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHT
T ss_pred -CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEE
Confidence 699999999987443322 268999999999 999999999999999 9998742
Q ss_pred ---CCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 344 ---GKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 344 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
+..+..+.+ ...|.+++|+|+|+.+|+++.
T Consensus 318 ~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 318 STIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 111222222 446899999999999999875
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=275.01 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=207.8
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc--CCceeeeeecccccccccceEEEEECCC--CcEEE-
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF- 189 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~- 189 (430)
..+|.+.|++++| +|++++|++|+.||.|++||+. +++....+..|.. .|.+++|+|+ +.+|+
T Consensus 5 l~gH~~~V~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 5 ANAHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp ---CCCCEEEECC-------CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEE
T ss_pred cccCcceeEEEEE-------CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEE
Confidence 4467789999999 7789999999999999999998 4455566665554 9999999988 88888
Q ss_pred EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCc--eeeEEeecccc
Q 014125 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEG 266 (430)
Q Consensus 190 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~ 266 (430)
++.||.|++||+..+.. .......+|...|++++|+|+. +..+++|+.||.|++||++++ .....+..|..
T Consensus 73 ~s~Dg~I~vwd~~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp EETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred EeCCCeEEEEECCCCcc------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 55899999999976321 1222336788899999999942 789999999999999999887 34556678999
Q ss_pred CeEEEEEcc-------------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCC---CCEEEEE
Q 014125 267 GVTHVQFSR-------------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPS---GRHLGTG 330 (430)
Q Consensus 267 ~i~~~~~~~-------------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~ 330 (430)
.|.+++|+| ++..+++++ .||.|++||+++.............|...|.+++|+|+ +.+|++|
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999999 589999999 99999999998875443344444688999999999999 8999999
Q ss_pred ccCCcEEEEEcCCCC-----eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 331 GQDGLVHIYDLQTGK-----WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+.||.|++||+.+++ .+.....|...|++++|+|++++|++++.||.|++|+..
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999999874 344455688899999999999999999999999999765
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.1e-32 Score=248.90 Aligned_cols=280 Identities=14% Similarity=0.149 Sum_probs=217.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..+.+++|+|++.++++++.|+.|++||+.+++....... .....|...|.+++| ++++.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------~~~~~~~~~v~~~~~-------~~~~~~ 183 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP------------EKYKKKLGFVETISI-------PEHNEL 183 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC------------HHHHTTCCEEEEEEE-------GGGTEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc------------ccccccCCceeEEEE-------cCCCEE
Confidence 4466999999888889999999999999987654321110 012345678999999 567899
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+++++.|+.|++||+.+++.+..+..+.. .+.+++|+|++..++ ++ .++.|++||++.... ...+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~----~~~~---- 250 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGK-----WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE----IRKT---- 250 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSS-----SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE----EEEC----
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCC-----CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE----EEEe----
Confidence 99999999999999999988888775554 789999999999886 55 689999999976321 1111
Q ss_pred CCCCcceEEEEEcCCCCceEEEec--------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeE
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGS--------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i 290 (430)
. ....+.+++|+| ++..+++++ .|+.|++||+++++....+. |...+.+++|+|+++.+++++..|+.|
T Consensus 251 ~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v 327 (433)
T 3bws_A 251 D-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKI 327 (433)
T ss_dssp C-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEE
T ss_pred c-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEE
Confidence 1 234589999999 555666666 58899999999988776664 667899999999998776665489999
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---------------CCcEEEEEcCCCCeecccccccC
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---------------DGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++||+.+.... ..+ .+...+.+++|+|+|++|++++. ||.|++||+.+++.+..+.. ..
T Consensus 328 ~v~d~~~~~~~-~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~ 401 (433)
T 3bws_A 328 EVYDLKEKKVQ-KSI----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GN 401 (433)
T ss_dssp EEEETTTTEEE-EEE----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SS
T ss_pred EEEECCCCcEE-EEe----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CC
Confidence 99999976433 222 25567899999999999888876 57999999999998888875 45
Q ss_pred CeeEEEEcCCCcEEEEeeC-Cceeeec
Q 014125 356 TVNGFSFHPFLPMAASSSG-HRRFPVD 381 (430)
Q Consensus 356 ~v~~~~~~~~~~~l~s~~~-d~~~~vw 381 (430)
.+.+++|+|++++|++++. |+.+++|
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 7899999999999988764 4444444
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=247.81 Aligned_cols=293 Identities=16% Similarity=0.188 Sum_probs=199.1
Q ss_pred ccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 57 SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 57 ~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
.+|...|++++|+| ++++|++++.||.|++||+.+++.. ....+...+.+++|.|. +
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------~~~~~~~~~~~~~~~~~----~ 153 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------------DVFNFEETVYSHHMSPV----S 153 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------------EEEECSSCEEEEEECSS----C
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------------eeccCCCceeeeEeecC----C
Confidence 46999999999999 7889999999999999999865321 23335578899999775 5
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCCccccc--
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDFEKY-- 211 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~~-- 211 (430)
+++.++++++.||.|++||+.+++....+..+.. .|.+++|+|++. +++ ++.|+.|++||++.........
T Consensus 154 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~ 228 (408)
T 4a11_B 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228 (408)
T ss_dssp SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence 5777999999999999999999988888876655 899999999998 465 5589999999998754332221
Q ss_pred ------ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-----cCeEEEEEccCCCEE
Q 014125 212 ------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYL 280 (430)
Q Consensus 212 ------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l 280 (430)
.........|...|.+++|+| ++.+|++++.||.|++||+++++....+..+. ..+........+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred cccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence 112223357888999999999 67799999999999999999887654443221 122222223334556
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEE
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGF 360 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 360 (430)
++++ .++.|++||+.+..... .+ .+|...|.+++|+|++++|++|+.||.|++||+.+++.+.....+.. ..
T Consensus 308 ~~~~-~~~~i~v~d~~~~~~~~-~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~ 379 (408)
T 4a11_B 308 VFVP-YGSTIAVYTVYSGEQIT-ML---KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KS 379 (408)
T ss_dssp EEEE-ETTEEEEEETTTCCEEE-EE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred EEEe-cCCEEEEEECcCCccee-ee---ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---cc
Confidence 6666 79999999999875442 32 57889999999999999999999999999999999988765553332 22
Q ss_pred EEcC-CCcEEEEeeCCceeeecCCCc
Q 014125 361 SFHP-FLPMAASSSGHRRFPVDDFED 385 (430)
Q Consensus 361 ~~~~-~~~~l~s~~~d~~~~vw~~~~ 385 (430)
.+.| ....+.+++.++.+++|+...
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------
T ss_pred ccccccceeecccCccCceeecCCcc
Confidence 3333 334556677899999997654
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.2e-33 Score=254.57 Aligned_cols=261 Identities=20% Similarity=0.288 Sum_probs=204.4
Q ss_pred ceeecccCCCceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccc
Q 014125 52 QFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (430)
Q Consensus 52 ~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (430)
....+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++....... ........|...|.+++|
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~--- 139 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR----------EPVITLEGHTKRVGIVAW--- 139 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC----------SCSEEEECCSSCEEEEEE---
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC----------CceEEecCCCCeEEEEEE---
Confidence 4456789999999999999 99999999999999999998764322111 122234567789999999
Q ss_pred cCccCCCC-ceEEEEeCCCcEEEEeccCCceeeee--ecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCC
Q 014125 131 MSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR 206 (430)
Q Consensus 131 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~ 206 (430)
+|++ .+|++++.||.|++||+.+++.+..+ ..+.. .|.+++|+|++.+|++ +.|+.|++||++....
T Consensus 140 ----~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 140 ----HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV 210 (402)
T ss_dssp ----CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred ----CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence 6677 69999999999999999999888877 44444 8999999999998885 5899999999987321
Q ss_pred cccccccccCCC-CCCCcc-eEEEEEcCCCCceEEEe---cCCCeEEEEEcCCcee-eEEee-ccccCeEEEEEccCCCE
Q 014125 207 DFEKYSTLKGNK-EGQAGI-MSAIAFSPTHTGMLAIG---SYSQTSAIYREDNMEL-LYVLH-GQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~ 279 (430)
.... ..|... +.++.|+| ++.+|++| +.|+.|++||+++++. ..... .|...+.+++|+|++++
T Consensus 211 --------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 281 (402)
T 2aq5_A 211 --------VAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281 (402)
T ss_dssp --------EEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTE
T ss_pred --------eeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCE
Confidence 1111 344444 88999999 67789988 7999999999998654 32322 46778999999999999
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
|++++..|+.|++||+.+.......+.. ..+...+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 282 l~~~g~~dg~i~i~d~~~~~~~~~~l~~-~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 282 VYLCGKGDSSIRYFEITSEAPFLHYLSM-FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEETTCSCEEEEEECSSTTCEEEEEE-ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEEEcCCCeEEEEEecCCCcceEeecc-cccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9876647999999999987642323322 236788999999999988764 566899999987643
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=233.56 Aligned_cols=251 Identities=15% Similarity=0.288 Sum_probs=199.2
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.+|...|++++|+|++++||+|+.||+|++|++.+++... ....|...+.++.+
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-----------------~~~~h~~~~~~~~~------- 117 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-----------------NMTSHSARVGSLSW------- 117 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----------------EEECCSSCEEEEEE-------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-----------------EecCccceEEEeec-------
Confidence 356788999999999999999999999999999998764332 22334456666555
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++..+++++.++.+++|+...+. .+..+..+.. .+..+.+++++.++++ +.|+.|++||++.......
T Consensus 118 --~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--- 187 (318)
T 4ggc_A 118 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--- 187 (318)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC---
T ss_pred --CCCEEEEEecCCceEeeecCCCceeEEEEcCccC-----ceEEEEEcCCCCEEEEEecCcceeEEECCCCccccc---
Confidence 56699999999999999988764 3444555444 8899999999999985 5899999999987433221
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceE--EEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe-cCCCe
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGML--AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG-RKDPY 289 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~ 289 (430)
.......+...|.++.++|++..++ ++++.+++|++||.+......... +...+..+.|+|++..+++++ ..|+.
T Consensus 188 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 188 -PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp -CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred -ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCE
Confidence 1222345667899999999777665 456788999999999887766554 677899999999999887654 36899
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
|++||++++.... .+ .+|...|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus 266 i~iwd~~~~~~~~-~l---~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 266 LVIWKYPTMAKVA-EL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEETTTCCEEE-EE---CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEECCCCcEEE-EE---cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999875432 33 6799999999999999999999999999999997654
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.4e-31 Score=238.09 Aligned_cols=265 Identities=14% Similarity=0.169 Sum_probs=206.8
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EEEeCCCcEE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIH 151 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~ 151 (430)
.++++++.|+.|++||+.+++... .+.+...+.+++| +|+++.+ ++++.|+.|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~------------------~~~~~~~~~~~~~-------s~dg~~l~~~~~~d~~i~ 57 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA------------------TIPVGSNPMGAVI-------SPDGTKVYVANAHSNDVS 57 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE------------------EEECSSSEEEEEE-------CTTSSEEEEEEGGGTEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE------------------EeecCCCcceEEE-------CCCCCEEEEECCCCCeEE
Confidence 468899999999999998764321 2223345889999 7788876 6777999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEE
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (430)
+||+.+++.+..+..+. .+.+++|+|++++|+ ++ .++.|++||+...... ... . +...+.+++
T Consensus 58 v~d~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~----~~~----~-~~~~~~~~~ 122 (391)
T 1l0q_A 58 IIDTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA----GTV----K-TGKSPLGLA 122 (391)
T ss_dssp EEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEE----E-CSSSEEEEE
T ss_pred EEECCCCeEEEEEECCC------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE----EEE----e-CCCCcceEE
Confidence 99999999888776544 788999999999886 55 5799999999864211 111 1 234589999
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS 309 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 309 (430)
|+|++..++++++.++.|++||+.+++....+..+ ..+.+++|+|++++|++++..++.|++||+++..... ..
T Consensus 123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~---- 196 (391)
T 1l0q_A 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TV---- 196 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EE----
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EE----
Confidence 99966556688999999999999999988888755 5679999999999886555489999999999874332 22
Q ss_pred CCccceEEEEEcCCCCEEEEEc---cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE-EEeeCCceeeecCCC
Q 014125 310 EHTNQRILFDIEPSGRHLGTGG---QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA-ASSSGHRRFPVDDFE 384 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~~~vw~~~ 384 (430)
.+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.+++||..
T Consensus 197 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 2456788999999999999888 68999999999999888887664 57899999999977 555656666666543
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.8e-32 Score=229.48 Aligned_cols=262 Identities=14% Similarity=0.124 Sum_probs=169.8
Q ss_pred eeEEEECcCCc---eEEEecCCCeEEEEeCCCC---CCcccccccccccccCcccceeeecCCCeeeeeeeccc------
Q 014125 63 LKGIKWSPDGS---SFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH------ 130 (430)
Q Consensus 63 v~~~~~sp~~~---~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 130 (430)
+.++.|-..|- .+++++.. .|++|+..+. +.... ...|..+|..+.+.|.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYT-----------------WHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEE-----------------EECCSSCEEEECCCTTCCSCEE
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEE-----------------EeccCceeEEEEEcCcccceee
Confidence 55666755443 77888875 8999999876 22222 2223345555555441
Q ss_pred ------------cCccCCC----CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE---
Q 014125 131 ------------MSASDPT----SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--- 191 (430)
Q Consensus 131 ------------~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--- 191 (430)
..+++|+ +..+++++.+ +.+|++.+ ++++.++
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~---------------------------g~lv~ss~~g 154 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK---------------------------RRLVSSSGTL 154 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT---------------------------TEEEEEESSS
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCC---------------------------CcEEEecccC
Confidence 1223666 6667766533 55565433 3444443
Q ss_pred cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCceeeEEeeccc---c
Q 014125 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---G 266 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---~ 266 (430)
.|+.|++|++...+.... ....|...++.++|+| .++.+|++++.|++|++||+++++.+..+.+|. .
T Consensus 155 ~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~ 227 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA 227 (356)
T ss_dssp TTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred CCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence 366666666644322111 1134455566666666 456799999999999999999999999998654 3
Q ss_pred CeEEEEEccCCCEE------------EEEecCCCeEEEEeCCCCceEEEEeec-ccCCccceEEEEEcCCCCEEEEEccC
Q 014125 267 GVTHVQFSRDGNYL------------YTGGRKDPYILCWDLRKAVQVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 267 ~i~~~~~~~~~~~l------------~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.+.+++|+|+|.++ ++++ .|++|++||..++......... ..+|...+.+..++ +.++++|+.|
T Consensus 228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs-~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~D 304 (356)
T 2w18_A 228 SVCHKAYSEMGLLFIVLSHPCAKESESLRS-PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTS 304 (356)
T ss_dssp CCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETT
T ss_pred eeEEEEECCCCCEEEEeccCCCcceeeccC-CCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCC
Confidence 67788999999877 3455 8999999999987544222111 23555555444444 7899999999
Q ss_pred CcEEEEEcCCCCeecccccccCCee-EEEEcCCCcEEEEeeCCceeeec
Q 014125 334 GLVHIYDLQTGKWISGFQAAADTVN-GFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++|+|||+.+++.+.++.+|...+. .++|+|+|++|++|+.|++|+||
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 9999999999999999999988655 58999999999999865444444
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=244.50 Aligned_cols=233 Identities=10% Similarity=0.008 Sum_probs=181.1
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc--cccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF--EKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~--~~~~ 212 (430)
.+++.+|++|+.||.|++||+.+++.+..+.. ..|.++.|+|+ ++.++.|+.|++|+.......+ ....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-------~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITT-------PNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-------ECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEec-------CCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 56788999999999999999999988877761 26778889888 4446699999999876421000 0001
Q ss_pred cccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCceeeEEee-ccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 213 TLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.+.....+|...|.+++|+| + +.++++++.||+|++||+++++...... .+...+++++|+|++.+|++++ .||.
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~-~dg~ 193 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS-PDGI 193 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC-TTSC
T ss_pred eeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc-CCCE
Confidence 11122245667899999999 5 4589999999999999999998876653 3455899999999999999999 9999
Q ss_pred EEEEeCCCCceEEEEeecccC-CccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc---ccCCee--EEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA---AADTVN--GFSFH 363 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~--~~~~~ 363 (430)
|++||++++......+ .. |...|.+++|+|+|.+|++++ |+.|++||+++++.+..+.. |...+. +++|+
T Consensus 194 i~iwd~~~~~~~~~~~---~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRF---PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp EEEEESSCTTSCCEEC---CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred EEEEECCCCCCCccEE---eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 9999999886542232 34 889999999999999999999 45999999999887666554 444454 59999
Q ss_pred CCCcEEEEeeC-CceeeecC
Q 014125 364 PFLPMAASSSG-HRRFPVDD 382 (430)
Q Consensus 364 ~~~~~l~s~~~-d~~~~vw~ 382 (430)
|++++|++++. |+.++||+
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEE
Confidence 99999999998 88888883
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-31 Score=242.30 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=194.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc---eeeeeecccc---------------------------
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDA--------------------------- 169 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~--------------------------- 169 (430)
.++.+++| +++|++|+++ .++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~-------s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 5 HPLQNLLT-------SRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp CCCCEEEE-------CSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------
T ss_pred ccEEEEEe-------cCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccc
Confidence 47888888 7789866555 57889999999998 5555543221
Q ss_pred ----------------------cccccceEEEEECCCCcEE-EEE-cCCeEEEEEcC--CCCCcccccccccCCCCCCCc
Q 014125 170 ----------------------VDEITAAFSVAFNPTGTKI-FAG-YNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 170 ----------------------~~~~~~v~~~~~~~~~~~l-~~~-~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~ 223 (430)
..+...|.+++|+|++++| +++ .|+.|++||+. .+ .....+ . ...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~---~--~~~~~~ 150 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLR---K--RFCFSK 150 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEE---E--EEECSS
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeee---e--cccCCC
Confidence 0122269999999999996 555 89999999997 42 111111 1 024557
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE----EeeccccCeEEEEEccC---CCEEEEEecCCCeEEEEeCC
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY----VLHGQEGGVTHVQFSRD---GNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~~d~~i~i~d~~ 296 (430)
.|.+++|+| ++.+|++|+.+|.|++|++.+++... .+.+|...|++++|+|+ +++|++++ .|+.|++||++
T Consensus 151 ~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vwd~~ 228 (450)
T 2vdu_B 151 RPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKISHYP 228 (450)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEEEES
T ss_pred CceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEEECC
Confidence 799999999 66799999999999999998876544 77789999999999999 99999999 99999999999
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-----------------------
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA----------------------- 353 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------------- 353 (430)
+........ .+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 229 ~~~~~~~~~---~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 229 QCFIVDKWL---FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp CTTCEEEEC---CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred CCceeeeee---cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 875443222 4788999999999 9999999999999999999999987777532
Q ss_pred --cCCeeEEEEcCCCcEEEEee-CCceeeecCC
Q 014125 354 --ADTVNGFSFHPFLPMAASSS-GHRRFPVDDF 383 (430)
Q Consensus 354 --~~~v~~~~~~~~~~~l~s~~-~d~~~~vw~~ 383 (430)
...|.+++|+|++++|++++ .++.|++|+.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 34689999999999999998 7777777766
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.3e-30 Score=236.22 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=204.5
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
...+.+++| +|++.++++++.++.|++||+.+++............+...+.+++|+|++.+++++ .|+.|+
T Consensus 122 ~~~~~~~~~-------s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 122 GFQPKSVRF-------IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SSCBCCCEE-------SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCCceEEEE-------eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 345667888 667788888889999999999999887644332222344589999999999988866 789999
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
+||++.... ......|...+.+++|+|++..++++++.++.|++||+++++.+..+..+ ..+.+++|+|++
T Consensus 195 ~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g 265 (433)
T 3bws_A 195 VFDLKTLAY--------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDG 265 (433)
T ss_dssp EEETTTCCE--------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTS
T ss_pred EEECCCceE--------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCC
Confidence 999976321 11123566789999999966656677778999999999999888887754 568999999999
Q ss_pred CEEEEEec-------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE-EEEEccCCcEEEEEcCCCCeecc
Q 014125 278 NYLYTGGR-------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGGQDGLVHIYDLQTGKWISG 349 (430)
Q Consensus 278 ~~l~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~ 349 (430)
++|++++. .|+.|++||++++.... .. .+...+..++|+|+++. +++++.|+.|++||+.+++.+..
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLID-TI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-EE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEe-ec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 99998873 37899999999874332 22 34457889999999975 46678999999999999988877
Q ss_pred cccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 350 FQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 350 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
+. +...+.+++|+|++++|++++.+..-. ....+++++.||.|++|+...++.+..+.+
T Consensus 341 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~--~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 341 IP-VFDKPNTIALSPDGKYLYVSCRGPNHP--TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp EE-CSSSEEEEEECTTSSEEEEEECCCCCT--TTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred ec-CCCCCCeEEEcCCCCEEEEEecCCCcc--ccccccccccceEEEEEECCCCcEEEEecC
Confidence 76 677899999999999888887642110 233456666777777777776665555443
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.9e-29 Score=228.00 Aligned_cols=304 Identities=14% Similarity=0.164 Sum_probs=220.3
Q ss_pred ecccCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.. ..+.....+.+++|
T Consensus 27 ~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~------------------~~~~~~~~v~~~~~------ 81 (391)
T 1l0q_A 27 TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI------------------ATVPAGSSPQGVAV------ 81 (391)
T ss_dssp EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE------------------EEEECSSSEEEEEE------
T ss_pred EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE------------------EEEECCCCccceEE------
Confidence 445554 48999999999976 67779999999999866432 22223348899999
Q ss_pred cCCCCceEE-EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccc
Q 014125 134 SDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 134 ~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~ 210 (430)
+|++++|+ +++.++.|++||+.+++.+..+..+. .+.+++|+|+++.++ ++ .++.|++||+.....
T Consensus 82 -spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---- 150 (391)
T 1l0q_A 82 -SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---- 150 (391)
T ss_dssp -CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred -CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----
Confidence 77888775 45567999999999998887776543 678999999999874 55 689999999976321
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec--CCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR--KDP 288 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~ 288 (430)
...+ .. ...+.+++|+|++..++++++.++.|++||+++++....+. +...+.+++|+|++++|++++. .++
T Consensus 151 ~~~~----~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 151 INTV----SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEE----EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEEE----ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence 1111 12 23468999999666566788899999999999998887776 5567899999999999999884 589
Q ss_pred eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCCCCeecccccccCCe---eEEEEcC
Q 014125 289 YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQTGKWISGFQAAADTV---NGFSFHP 364 (430)
Q Consensus 289 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~~~~~~ 364 (430)
.|++||+++.... ..+ .. ...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+. ..+.+.|
T Consensus 225 ~v~~~d~~~~~~~-~~~---~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (391)
T 1l0q_A 225 TVSMIDTGTNKIT-ARI---PV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIP 299 (391)
T ss_dssp EEEEEETTTTEEE-EEE---EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECS
T ss_pred cEEEEECCCCeEE-EEE---ec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccc
Confidence 9999999987433 222 12 2357889999999887 677889999999999999988887776543 2355666
Q ss_pred CCcEEEEeeC-----CceeeecCCCccccccCCCcEEEEeeccccc
Q 014125 365 FLPMAASSSG-----HRRFPVDDFEDLHLSGDENCVSVWSFLYASM 405 (430)
Q Consensus 365 ~~~~l~s~~~-----d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~ 405 (430)
++..+..+.. .+...+-+.-.+...+.|..+++|++..+..
T Consensus 300 ~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 300 VQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 5543321111 1111111112344556688899999875543
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-30 Score=232.23 Aligned_cols=243 Identities=15% Similarity=0.251 Sum_probs=189.9
Q ss_pred eeecCCCeeeeeeeccccCccCCC---CceEEEEeCCCcEEEEeccC-Ccee-eeeecccccccccceEEEEECCCCcEE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPT---SCVFASTTRDHPIHLWDATT-GLLR-CTYRAYDAVDEITAAFSVAFNPTGTKI 188 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (430)
....|...|.+++| +|+ +.+|++|+.||.|++||+.+ +... ..+..+.. .|.+++|+|++++|
T Consensus 34 ~~~~h~~~v~~~~~-------~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 34 VTSSPDDSIGCLSF-------SPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKV 101 (368)
T ss_dssp CSSCCSSCEEEEEE-------CCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEE
T ss_pred eccCCCCceEEEEE-------cCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEE
Confidence 34467789999999 555 69999999999999999987 4444 55555554 89999999999999
Q ss_pred EE-EcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE--cCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc
Q 014125 189 FA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 189 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
++ +.|+.|++||++.... . ....|...|.+++| +| ++.+|++++.||.|++||+++++.+..+..+.
T Consensus 102 ~s~~~dg~v~iwd~~~~~~--------~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQA--------I-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp EEEETTSEEEEEETTTTEE--------E-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred EEEcCCCcEEEEEcCCCCc--------e-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 85 5899999999986421 1 12457889999999 77 67789999999999999999999888888654
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE----EEEEccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH----LGTGGQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~vwd~ 341 (430)
.+.++.+. ...+++++ .++.+++|+++........... .......++.+.++... +++++.||.|++||+
T Consensus 172 -~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 172 -RCYCADVI--YPMAVVAT-AERGLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp -CEEEEEEE--TTEEEEEE-GGGCEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred -CceEEEec--CCeeEEEe-CCCcEEEEEeccccchhhhccc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence 56666665 45788888 8999999999987665544433 33344555555555444 999999999999999
Q ss_pred CCC---CeecccccccC------------CeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 342 QTG---KWISGFQAAAD------------TVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 342 ~~~---~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+.. +.+..+..|.. .|.+++|+|++++|++++.||.|++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 987 45666677765 79999999999999999976666666543
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.3e-31 Score=232.73 Aligned_cols=235 Identities=12% Similarity=0.104 Sum_probs=179.3
Q ss_pred ecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
..|...|.+++| +|++.+|++|+.++ +++|++.+++........ .+..+++.+++..++ ++ .|
T Consensus 16 ~~h~~~V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 16 NHVSNPVTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-------HLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ---CCCCCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-------CCCEEEECTTSSEEEEECSST
T ss_pred ccCCCceEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-------CeEEEEEcCCCCEEEEEECCc
Confidence 446789999999 77999999998886 789999877655443221 466788888888775 44 77
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-eeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~ 272 (430)
+.|++||+.++... ..+ .+...|.+++++++ .++++ .++.|++||+.++ +.+..+.. +...++
T Consensus 81 ~~v~iWd~~~~~~~----~~~-----~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 81 EVVHIWDDVKKQDV----SRI-----KVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp TEEEEEETTTTEEE----EEE-----ECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred cEEEEEECCCCcEE----EEE-----ECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 89999999764211 111 23457999999873 34443 4789999999988 66666654 444556
Q ss_pred EccCCCEEEEE-ecCCCeEEEEeCCCCceE-----------EEE-eecccCCccceEEEEEcCCCCEEEEEccCCc-EEE
Q 014125 273 FSRDGNYLYTG-GRKDPYILCWDLRKAVQV-----------VYK-LYRSSEHTNQRILFDIEPSGRHLGTGGQDGL-VHI 338 (430)
Q Consensus 273 ~~~~~~~l~~~-~~~d~~i~i~d~~~~~~~-----------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~v 338 (430)
+++ .+++++ +..||.|++||+++.... ... .....+|...|.+++|+|+|++|++|+.||+ |++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 666 567665 448999999999875310 000 2233689999999999999999999999998 999
Q ss_pred EEcCCCCeecccc-c-ccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 339 YDLQTGKWISGFQ-A-AADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 339 wd~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
||+++++.+..+. + |...|.+++|+|++++|++++.|+.+++|+.
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 9999999999998 5 9999999999999999999999999999964
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.9e-31 Score=239.37 Aligned_cols=265 Identities=13% Similarity=0.040 Sum_probs=170.6
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc-
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS- 134 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 134 (430)
...|...+....+++++.+||+|+.|++|+|||+..+..... .......+|...|.+++|+|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~------------~~~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ------------HVLGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE------------EEECTTTSCSSCEEEEEEEEEECTTC
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee------------eeecccCCCCCceEEEEEcccccccc
Confidence 344555555566667788999999999999999876532110 0111234578899999998743322
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCCcccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
..++++|++|+.|++|++||+.++.....+..+.. .+.+++|+|++. +|+ ++.|+.|++||++.+........
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 23789999999999999999998877776666554 899999999985 566 45999999999987543221110
Q ss_pred -----------------cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 213 -----------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 213 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
.......+|...+.++.|.+.++..+++++.|+++++||+..++....+..|...+..+.+.|
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 011123467788999999854778999999999999999988776666655554444433332
Q ss_pred -------------------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 276 -------------------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 276 -------------------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+..++++++.||.|++||+.++...... ..|...|.+++|+|+|++||+++.+| +
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 23444444448999999999987655433 35778999999999999999998876 6
Q ss_pred EEEEcC
Q 014125 337 HIYDLQ 342 (430)
Q Consensus 337 ~vwd~~ 342 (430)
.+|.+.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 666543
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.9e-29 Score=234.20 Aligned_cols=310 Identities=12% Similarity=0.040 Sum_probs=231.9
Q ss_pred EECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC
Q 014125 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (430)
Q Consensus 67 ~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 146 (430)
.|+|++.++++++.|++|.+||..+++....+ ..+ ..+..++| +|++++|++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i----------------~~g--~~~~~v~~-------spdg~~l~v~~~ 198 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI----------------DTG--YAVHISRM-------SASGRYLLVIGR 198 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEE----------------ECS--TTEEEEEE-------CTTSCEEEEEET
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEE----------------ecC--cccceEEE-------CCCCCEEEEECC
Confidence 38999999999999999999999876543211 112 23777778 889999999999
Q ss_pred CCcEEEEec--cCCceeeeeecccccccccceEEEEECC----CCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 147 DHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 147 dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
|+.|.+||+ .+++.+..+.... .+..++|+| +|++++++ .+++|.+||..+... ...+.......
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~g~------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~ 271 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTV 271 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECS
T ss_pred CCeEEEEECcCCCCcEEEEEecCC------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCccc
Confidence 999999999 7888877776432 678999999 99998854 589999999876321 11111100000
Q ss_pred C---CC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE--EeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 219 E---GQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 219 ~---~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
. .| ...+..+.++|++..++++...++.|.+||..+.+.+. .+. +...+..++|+|+|+++++++..+++|.+
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 0 02 23689999999888888999999999999998765443 333 55678899999999998887757899999
Q ss_pred EeCCCCceEEEEeec-ccCCccceEEEEEcCC-CCEEEEEc-cCCcEEEEEcCC-------CCeecccccccCCeeEEEE
Q 014125 293 WDLRKAVQVVYKLYR-SSEHTNQRILFDIEPS-GRHLGTGG-QDGLVHIYDLQT-------GKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~ 362 (430)
||+.+++.. ..+.. ...|......+ ++|+ |..++++. .|++|.+||+.+ ++.++++.+|.+.+..+++
T Consensus 351 ~D~~tg~l~-~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~ 428 (543)
T 1nir_A 351 IDSKDRRLS-ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT 428 (543)
T ss_dssp EETTTTEEE-EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred EECCCCeEE-EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence 999988543 23321 12344434333 4777 66677775 689999999998 8999999999989999999
Q ss_pred cCCCcEEEEee-------CCceeeecCCCc-----------------------------------cccc----cCCCcEE
Q 014125 363 HPFLPMAASSS-------GHRRFPVDDFED-----------------------------------LHLS----GDENCVS 396 (430)
Q Consensus 363 ~~~~~~l~s~~-------~d~~~~vw~~~~-----------------------------------l~~~----~~d~~i~ 396 (430)
+|++++|.+++ .++.|.|||... +++. +.|+.|.
T Consensus 429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~ 508 (543)
T 1nir_A 429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV 508 (543)
T ss_dssp CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE
T ss_pred CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE
Confidence 99999999987 267899996542 2221 2478999
Q ss_pred EEeecccccccccCC
Q 014125 397 VWSFLYASMMENADG 411 (430)
Q Consensus 397 ~w~~~~~~~~~~~~~ 411 (430)
+||..+.+++..+.+
T Consensus 509 v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 509 VVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEECCCceEEEeecC
Confidence 999999888877764
No 126
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.6e-29 Score=223.14 Aligned_cols=245 Identities=16% Similarity=0.156 Sum_probs=172.1
Q ss_pred eeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECC--CCcE
Q 014125 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNP--TGTK 187 (430)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 187 (430)
....|...|.+++| +|++++|++++.||.|++||+.++. ....+..+.. .|.+++|+| ++.+
T Consensus 6 ~~~gH~~~v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 6 FDSGHDDLVHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRI 73 (351)
T ss_dssp EECCCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSE
T ss_pred cCcccccceeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCE
Confidence 45568899999999 7789999999999999999998763 4444555444 899999999 5888
Q ss_pred EE-EEcCCeEEEEEcCCCCCcccc-cccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEee--
Q 014125 188 IF-AGYNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLH-- 262 (430)
Q Consensus 188 l~-~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~-- 262 (430)
|+ ++.|+.|++||++........ ..........|...|.+++|+|+. +.++++++.||.|++||+++++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 88 458999999999875321100 001122335788899999999942 7799999999999999998876543332
Q ss_pred -----------ccccCeEEEEEccC---CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCC----
Q 014125 263 -----------GQEGGVTHVQFSRD---GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG---- 324 (430)
Q Consensus 263 -----------~~~~~i~~~~~~~~---~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 324 (430)
.|...+.+++|+|+ +..+++++ .++.+.+|+....... .......|...|.+++|+|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH--VAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE--EEEECCCCCSCEEEEEECCCSSCSS
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee--eeeecCCCCcceeEEEECCCCCCcc
Confidence 57788999999997 88999999 8999988887766432 223346789999999999998
Q ss_pred CEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 325 RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 325 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
++|++|+.||.|++||++++........+...+....+.+....++.+.
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence 8999999999999999998766555544444455555555555444443
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=2.2e-28 Score=221.71 Aligned_cols=313 Identities=11% Similarity=0.060 Sum_probs=215.9
Q ss_pred CceeEEEECcCCc-eEEEec----CCC----eEEEEeC--CCCCCcccccccccccccCcccceeeecCCCeeeeeeecc
Q 014125 61 NFLKGIKWSPDGS-SFLTSS----EDK----TLRIFSL--PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (430)
Q Consensus 61 ~~v~~~~~sp~~~-~l~s~~----~dg----~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (430)
..+....|++.|. ++++|+ .|| .+++||+ .+++.... .....|...+..+++.+
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 127 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ---------------NSYKVNKQWLRYAGHTA 127 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE---------------EEEEECGGGHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee---------------eEEEcChhHHHHHHHHH
Confidence 4678888988775 565776 467 8999999 76643211 11223334555555533
Q ss_pred cc-------CccCCCCceEEEEeCC------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC-
Q 014125 130 HM-------SASDPTSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK- 194 (430)
Q Consensus 130 ~~-------~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~- 194 (430)
.. ....+.+..++.++.+ +.|++||+..+ ....+..+.. .+.+++|+|+|+.|+ ++.++
T Consensus 128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~ 201 (415)
T 2hqs_A 128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESG 201 (415)
T ss_dssp HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESS-----CEEEEEECTTSSEEEEEECTTS
T ss_pred HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCC
Confidence 10 0001235566666554 79999999754 4455554443 899999999999998 45554
Q ss_pred --eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCe--EEEEEcCCceeeEEeeccccCeEE
Q 014125 195 --SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTH 270 (430)
Q Consensus 195 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~ 270 (430)
.|++||+.++.. .. ...+...+.+++|+|++..++++++.++. |++||+.+++. ..+..|...+.+
T Consensus 202 ~~~i~~~d~~tg~~-----~~----l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 202 RSALVIQTLANGAV-----RQ----VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp SCEEEEEETTTCCE-----EE----EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred CcEEEEEECCCCcE-----EE----eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 999999986421 11 23455679999999965545557776654 99999988766 466678889999
Q ss_pred EEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC---CcEEEEEcCCCC
Q 014125 271 VQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD---GLVHIYDLQTGK 345 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~ 345 (430)
++|+|+|++|++++..++ .|++||+.++... .+ ..+...+..++|+|+|++|++++.+ ..|++||+.+++
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~--~l---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RI---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--EC---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCEE--EE---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 999999999998883345 6888898876422 22 3355678899999999999988765 579999999888
Q ss_pred eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCcceeeeeccCcc
Q 014125 346 WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGINGCEFNCQSEHEN 425 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (430)
.. .+..+. .+.+++|+|+|++|++++.++ ....|++|++. ++....+.++.+ .+.+....++
T Consensus 347 ~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~--------------~~~~l~~~d~~-g~~~~~l~~~~~-~v~~~~~~~~ 408 (415)
T 2hqs_A 347 VQ-VLSSTF-LDETPSLAPNGTMVIYSSSQG--------------MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSPY 408 (415)
T ss_dssp EE-ECCCSS-SCEEEEECTTSSEEEEEEEET--------------TEEEEEEEETT-SCCEEECCCSSS-EEEEEEECCC
T ss_pred EE-EecCCC-CcCCeEEcCCCCEEEEEEcCC--------------CccEEEEEECC-CCcEEEeeCCCC-CCcCCccccc
Confidence 64 455454 899999999999999887532 11267778776 444556666655 4555565555
Q ss_pred CC
Q 014125 426 LN 427 (430)
Q Consensus 426 ~~ 427 (430)
+.
T Consensus 409 ~~ 410 (415)
T 2hqs_A 409 LH 410 (415)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.8e-28 Score=205.08 Aligned_cols=187 Identities=12% Similarity=0.141 Sum_probs=134.7
Q ss_pred CCceEEEEe--CCCcEEEEec-cCCceeeeeecccccccccceEEEEECC---CCcEEEE-EcCCeEEEEEcCCCCCccc
Q 014125 137 TSCVFASTT--RDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFA-GYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 137 ~~~~l~~~~--~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~-~~d~~i~v~d~~~~~~~~~ 209 (430)
+++++.+++ .|+.|++|++ ++++.+..+..+.. .+..++|+| ++.+|++ +.|++|+|||+.++.. .
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~-----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l- 216 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP-----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-L- 216 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-E-
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC-----ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-E-
Confidence 455666644 5999999999 55888777777665 788889998 7789995 5999999999987421 1
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceE------------EEecCCCeEEEEEcCCceeeEEe-----eccccCeEEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGML------------AIGSYSQTSAIYREDNMELLYVL-----HGQEGGVTHVQ 272 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i~~~~ 272 (430)
..+... ..+...+.+++|+|+ +.++ ++|+.|++|++||..+++.+..+ .+|...+.+..
T Consensus 217 --~tL~g~-~~~v~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 217 --KKMHID-DSYQASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp --EEEECC-C---CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred --EEEcCC-CcceeeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 112110 112346888899994 4444 67889999999999999887655 35655554444
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceE-EEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
+ ++..+++++ .|++|+|||+.+++... .+ .+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 293 ~--sg~~lASgS-~DgTIkIWDl~tGk~l~-tL---~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 293 V--KDHCAAAIL-TSGTIAIWDLLLGQCTA-LL---PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--ETTEEEEEE-TTSCEEEEETTTCSEEE-EE---CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred c--CCCEEEEEc-CCCcEEEEECCCCcEEE-Ee---cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4 477888888 99999999999986443 33 45665544 5899999999999999999999996
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.2e-26 Score=216.68 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=211.3
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeC--CCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC----
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL--PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP---- 136 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 136 (430)
+.+++|+|||++|++++.|++|++||+ .+++.. ..+..+..+..++| +|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~------------------~~i~~g~~p~~va~-------sp~~~~ 235 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV------------------AEIKIGIEARSVES-------SKFKGY 235 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE------------------EEEECCSEEEEEEE-------CCSTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE------------------EEEecCCCcceEEe-------CCCcCC
Confidence 889999999999999999999999999 543221 12234556788888 88
Q ss_pred CCceEEEEeC-CCcEEEEeccCCceeeeeeccccc-----cc-ccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCc
Q 014125 137 TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV-----DE-ITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 137 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~-----~~-~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~ 207 (430)
+|+++++++. +++|.+||..+++++..+...... -+ ...+.++.++|++..+++ . .++.|.+||+......
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 8999998885 899999999999988887653210 01 126789999998877664 3 7899999999764321
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec----cccCeEEEEEccC-CCEEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----QEGGVTHVQFSRD-GNYLYT 282 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~ 282 (430)
. ...+ .+...+..+.|+|++..+++++..+++|.+||..+++.+..+.. |.+....+ ++|+ +..+++
T Consensus 316 ~--~~~i-----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s 387 (543)
T 1nir_A 316 T--VTSI-----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST 387 (543)
T ss_dssp E--EEEE-----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred e--eEEe-----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence 1 0011 12345778999996655666777799999999999998887764 54433333 4677 444444
Q ss_pred EecCCCeEEEEeCCCC------ceEEEEeecccCCccceEEEEEcCCCCEEEEEc-------cCCcEEEEEcCCCCee-c
Q 014125 283 GGRKDPYILCWDLRKA------VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-------QDGLVHIYDLQTGKWI-S 348 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~-~ 348 (430)
+...|++|.+||+.+. .+.+..+ ..+...+..+.++|+|++|++++ .+++|.|||+.+++.. .
T Consensus 388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~ 464 (543)
T 1nir_A 388 SHLGDGSISLIGTDPKNHPQYAWKKVAEL---QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 464 (543)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEE---ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred ccCCCceEEEEEeCCCCCchhcCeEEEEE---EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE
Confidence 4325799999999872 1333333 45666778899999999999987 3679999999998876 3
Q ss_pred cc--------ccccCCeeEEEEcCCCcEEEEee-----CCceeeecCCCc
Q 014125 349 GF--------QAAADTVNGFSFHPFLPMAASSS-----GHRRFPVDDFED 385 (430)
Q Consensus 349 ~~--------~~~~~~v~~~~~~~~~~~l~s~~-----~d~~~~vw~~~~ 385 (430)
.+ ..+...+..++|+|+|+.|..+. .++.|.|||..+
T Consensus 465 ~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 465 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred EeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 33 34567899999999999888763 379999998765
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.1e-26 Score=227.19 Aligned_cols=299 Identities=14% Similarity=0.141 Sum_probs=201.5
Q ss_pred CCceeEEEECcCCceEEEecC-CC-----eEEEEeCCCCCCcccccccccccc-------cCcccceeeecCCCeeeeee
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-DK-----TLRIFSLPENGISYDVNACSLAKD-------QDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~ 126 (430)
...|.+++|||||++|++++. |+ .|++||+.+++............. ...............+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 446999999999999999998 88 899999988754322211100000 00000000000013467788
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCc--eeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 204 (430)
| +|||++|++++. +.|++||+.++. ....+..+. ..+..++|+|||++|+.+.++.|++||+..+
T Consensus 116 ~-------SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g 182 (741)
T 2ecf_A 116 W-------SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGRNLWVIDLASG 182 (741)
T ss_dssp E-------CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred E-------CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence 8 889999999887 899999999872 223333332 2788999999999999777889999999763
Q ss_pred CCcccccccccCCCCCCCc----------------ceEEEEEcCCCCceEEEecCCC-----------------------
Q 014125 205 GRDFEKYSTLKGNKEGQAG----------------IMSAIAFSPTHTGMLAIGSYSQ----------------------- 245 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg----------------------- 245 (430)
... .+ ...+.. .+..++|+|+ ++.|++++.|+
T Consensus 183 ~~~-----~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 183 RQM-----QL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEE-----EC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred CEE-----Ee---ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 211 11 011111 1477999994 55666666554
Q ss_pred ----------eEEEEEcCC-ceeeEEee--ccccCeEEEEEccCCCEEEEEec----CCCeEEEEeCCCCceEEEEeecc
Q 014125 246 ----------TSAIYREDN-MELLYVLH--GQEGGVTHVQFSRDGNYLYTGGR----KDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 246 ----------~v~~~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.++..........
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 332 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS 332 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC
Confidence 788999988 77654433 36678999999 99999997762 25689999999875433221111
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC-CCCeecccccccCCeeEE-EEcCCCcEEEEeeC-Cc--eeeecC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ-TGKWISGFQAAADTVNGF-SFHPFLPMAASSSG-HR--RFPVDD 382 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~-d~--~~~vw~ 382 (430)
......+..++|+|+|+++++++.||.++||.++ +++ ...+..|...|..+ .|+|+++.|+..+. ++ .++||+
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 1111134578999999999999999988888765 345 77777788888887 59999997765544 43 666763
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.4e-26 Score=209.97 Aligned_cols=264 Identities=14% Similarity=0.159 Sum_probs=197.2
Q ss_pred ecccCCCceeEEEECc--------------CCceEEEecCC------CeEEEEeCCCCCCcccccccccccccCccccee
Q 014125 55 TSSIPNNFLKGIKWSP--------------DGSSFLTSSED------KTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp--------------~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (430)
.+.+|...+..+++++ .+..++.++.+ +.|++||++... ...
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------~~~ 173 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------QFV 173 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------CEE
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------CEE
Confidence 4677888888877775 15566666554 799999997432 123
Q ss_pred eecCCCeeeeeeeccccCccCCCCceEEEEeCCC---cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-E
Q 014125 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A 190 (430)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (430)
...|...+.+++| +|+|+.|++++.++ .|++||+.+++... +..+.. .+.+++|+|+|+.|+ +
T Consensus 174 l~~~~~~v~~~~~-------Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~-----~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 174 VHRSPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR-----HNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp EEEESSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSS-----CEEEEEECTTSSEEEEE
T ss_pred EeCCCCcceeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCC-----cccCEEEcCCCCEEEEE
Confidence 3445678999999 78999999999885 99999999987653 333332 788999999999888 5
Q ss_pred E-cCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-CC--eEEEEEcCCceeeEEeecc
Q 014125 191 G-YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQ 264 (430)
Q Consensus 191 ~-~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~ 264 (430)
+ .++ .|++||+..... . .+..+...+.+++|+|+ +..|++++. ++ .|++||+.+++. ..+..+
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-----~----~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~ 309 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-----R----QVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE 309 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-----E----ECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred EecCCCceEEEEECCCCCE-----E----eCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCE-EEEecC
Confidence 4 344 599999876321 1 12456678999999995 455555554 55 678889887764 344556
Q ss_pred ccCeEEEEEccCCCEEEEEecC--CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---cEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG---LVHIY 339 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw 339 (430)
...+.+++|+|+|++|++++.. +..|++||+.++... .+ ..+. .+.+++|+|+|++|++++.++ .|++|
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--~l---~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VL---SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLV 383 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--EC---CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--Ee---cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence 6788999999999999988833 258999999987542 22 2232 789999999999999988877 79999
Q ss_pred EcCCCCeecccccccCCeeEEEEcCCCc
Q 014125 340 DLQTGKWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 340 d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
|+. +.....+..|.+.|.+++|+|...
T Consensus 384 d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 384 STD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred ECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 987 555778888999999999999654
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=5.4e-25 Score=194.02 Aligned_cols=279 Identities=11% Similarity=0.104 Sum_probs=189.4
Q ss_pred EECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 67 KWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 67 ~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
.|.++++ .+++++.++.|.+||+.+++.... .. .+...+ .++| +|+++++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~-~~~~~~-~~~~-------s~dg~~l~~~~ 58 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ----------------IT-LGYDFV-DTAI-------TSDCSNVVVTS 58 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEE----------------EE-CCCCEE-EEEE-------CSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeee----------------EE-ccCCcc-eEEE-------cCCCCEEEEEe
Confidence 4555544 577888899999999987644211 11 123445 7888 77898666665
Q ss_pred C-CCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEEEEcCC----eEEEEEcCCCCCcccccccccCCCC
Q 014125 146 R-DHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK----SVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 146 ~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
. ++.|.+||+.+++. ...+..... +..+++|+|++++++++.++ .|.+||+..... . ..+ .
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~---~~~----~ 125 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-I---STI----P 125 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-E---EEE----E
T ss_pred CCCCeEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-E---EEE----E
Confidence 5 88999999999887 555554432 34349999999999865433 899999976321 1 111 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCe-EEEEEcCCceeeE----EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLY----VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~-v~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
......+++|+|++..++++...++. |.+|++.....+. ...........++|+|+|+++++++..++.|++||
T Consensus 126 -~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 126 -IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp -CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 12346899999966666677677788 9999987543321 11123456899999999998877775789999999
Q ss_pred CCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCe--ecccccc----cC---CeeEEEE
Q 014125 295 LRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKW--ISGFQAA----AD---TVNGFSF 362 (430)
Q Consensus 295 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~----~~---~v~~~~~ 362 (430)
+.+.... ...+ .....+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ .. ....++|
T Consensus 205 ~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
T 3u4y_A 205 TQNPENITLLNAV----GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMAL 280 (331)
T ss_dssp CSSTTSCEEEEEE----ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEE
T ss_pred CCCCcccceeeec----cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEE
Confidence 9877541 2122 1235667899999999776554 577899999998877 3322211 22 2356899
Q ss_pred cCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccc
Q 014125 363 HPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYAS 404 (430)
Q Consensus 363 ~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~ 404 (430)
+|++++|++++. .++.|++|++....
T Consensus 281 spdg~~l~v~~~----------------~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 281 NKTETKLFISAN----------------ISRELKVFTISGKV 306 (331)
T ss_dssp CTTSSEEEEEET----------------TTTEEEEEETTSCE
T ss_pred CCCCCEEEEecC----------------CCCcEEEEEecCCc
Confidence 999998877664 35567777765433
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=1.2e-25 Score=194.82 Aligned_cols=258 Identities=15% Similarity=0.135 Sum_probs=187.4
Q ss_pred EecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc
Q 014125 77 TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT 156 (430)
Q Consensus 77 s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 156 (430)
+++.|+.|++||+.+++. .....+...|.+++| +|++++|++++ ++.|++||+.
T Consensus 17 ~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~ 70 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------------------RVVWQTPELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLA 70 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------------------EEEEEESSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESS
T ss_pred CCCcceeEEEEeCCCCce------------------eeeccCCcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCC
Confidence 456789999999986532 123345678999999 77999999986 7899999999
Q ss_pred C-CceeeeeecccccccccceEEEEECCCCcEEEEEc---CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC
Q 014125 157 T-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (430)
Q Consensus 157 ~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (430)
+ ++.......+. ...+.+++|+|++++|+.+. ++...+|.++....... .+ . ....+..++|+|
T Consensus 71 ~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~----~-~~~~~~~~~~sp 138 (297)
T 2ojh_A 71 GDPSPEKVDTGFA----TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR---LM----T-KNLPSYWHGWSP 138 (297)
T ss_dssp SCCSCEECCCTTC----CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE---EC----C-SSSSEEEEEECT
T ss_pred CCCCceEeccccc----cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE---Ee----e-cCCCccceEECC
Confidence 8 77665544332 12678899999999998542 34555665543222111 11 1 122388899999
Q ss_pred CCCceEEEecCCCeEEEEEcCC-ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 233 THTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 233 ~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
++..+++++..++.+++|+++. ......+..+...+.+++|+|+++.|++++..++.+++|++.........+ ..+
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---~~~ 215 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---TDS 215 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---CCC
T ss_pred CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---ecC
Confidence 6655555888899999998642 233455666778899999999999888777458999999886332333232 345
Q ss_pred ccceEEEEEcCCCCEEEEEccC-----------CcEEEEEcCCCCee--cccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 312 TNQRILFDIEPSGRHLGTGGQD-----------GLVHIYDLQTGKWI--SGFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
...+..++|+|+|++|++++.+ +.|++||+.+++.. ..+.+|...+..++|+|+++.|++++.+
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6778899999999999888776 56999999988763 3444778899999999999999888764
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=7e-25 Score=194.21 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=177.3
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC-CcEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD-HPIHL 152 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~v 152 (430)
.+++++.|+.|++|++..... ........+...+.+++| +|++++|++++.+ +.|.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~v~~ 64 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA---------------LTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLA 64 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC---------------EEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCc---------------EEEeeeEecCCCCceEEE-------CCCCCEEEEeecCCCeEEE
Confidence 444557899999999863210 011122345567788888 7789988888876 99999
Q ss_pred Eecc--CCceee--eeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 153 WDAT--TGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 153 wd~~--~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
|++. +++... .+... ..+..++|+|++++++ ++ .++.|.+||+.. +......... . ....+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~----~-~~~~~~ 132 (343)
T 1ri6_A 65 YRIAPDDGALTFAAESALP------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVV----E-GLDGCH 132 (343)
T ss_dssp EEECTTTCCEEEEEEEECS------SCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEE----C-CCTTBC
T ss_pred EEecCCCCceeeccccccC------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Cccccccccc----c-CCCCce
Confidence 9997 555332 22221 1667899999999887 44 488999999952 2111111111 1 123478
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeE----Eeec-cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC--C
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLY----VLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK--A 298 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~--~ 298 (430)
+++|+|++..+++++..++.|.+||+.+ ++... .+.. ....+..++|+|+++++++++..++.|.+|++.. +
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 8999995554444444899999999987 54432 2222 3347889999999998877765789999999964 2
Q ss_pred ceE-EEEeeccc---CCccceEEEEEcCCCCEEE-EEccCCcEEEEEcC--CC--CeecccccccCCeeEEEEcCCCcEE
Q 014125 299 VQV-VYKLYRSS---EHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQ--TG--KWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 299 ~~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
... ........ .....+..++|+|+|++|+ ++..++.|.+||+. ++ +.+..+..+.. +.+++|+|++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 291 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYL 291 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEE
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEE
Confidence 211 11111111 1234577899999998877 55578999999998 33 34444544444 8999999999988
Q ss_pred EEee
Q 014125 370 ASSS 373 (430)
Q Consensus 370 ~s~~ 373 (430)
++++
T Consensus 292 ~~~~ 295 (343)
T 1ri6_A 292 IAAG 295 (343)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8876
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=2e-24 Score=192.19 Aligned_cols=275 Identities=10% Similarity=0.072 Sum_probs=200.4
Q ss_pred CCceeEEEECcCCceEEEecC-------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..++|+|+|++|++++. ++.|.+||..+++.... +..+..+..++|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~----- 96 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA------------------IHNDLKPFGATI----- 96 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE------------------EEESSCCCSEEE-----
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE------------------EecCCCcceEEE-----
Confidence 456889999999998888774 56899999987643211 112234566777
Q ss_pred ccCCCCceE-EEEeCCCcEEEEeccCCceeeeeecccccc----cccceEEEEECCCCcEEEEE---cCCeEEEEEcCCC
Q 014125 133 ASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVD----EITAAFSVAFNPTGTKIFAG---YNKSVRVFDVHRP 204 (430)
Q Consensus 133 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~---~d~~i~v~d~~~~ 204 (430)
+|+++.+ ++...++.|.+||+.+++.+..+....... ....+.+++|+|+++.++++ .++.|.+||..+.
T Consensus 97 --s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 97 --NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp --ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred --CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 6788855 455667999999999999888776643211 01126789999999987743 3788999999763
Q ss_pred CCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec----cccCeEEEEEccCCCEE
Q 014125 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----QEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l 280 (430)
... .. ...+...+..++|+| +++.+++++.++.|.+||..+++....+.. +...+..++|+|+++++
T Consensus 175 ~~~----~~----~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 175 KLK----TA----IQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEE----EE----ECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred ceE----EE----ecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 211 11 122233467889999 556777788899999999999988877664 45568889999999988
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccccccCCeeE
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
++++..++.|.+||+.++.... .... .. ...++|+|+|+++++++ .++.|.+||+.+++.+..+..+ ..+.+
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~-~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 318 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILA-KVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNS 318 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEE-EEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEE-EEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCe
Confidence 8887456999999998875432 2221 11 24689999999665554 6899999999999988877644 46799
Q ss_pred EEEcCCCcEEEEeeCC
Q 014125 360 FSFHPFLPMAASSSGH 375 (430)
Q Consensus 360 ~~~~~~~~~l~s~~~d 375 (430)
++|+|++++|+.+..+
T Consensus 319 ~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEEcCCCCEEEEEEcc
Confidence 9999999977766654
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=3.1e-25 Score=216.54 Aligned_cols=288 Identities=12% Similarity=0.005 Sum_probs=190.8
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC---eeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE---SVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~ 138 (430)
.+.+++|+|||+++++ +.||+|++||+.+++....+ ..+.. .|.+++| ||||
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-----------------~~~~~~~~~v~~~~~-------SpDg 72 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-----------------EGKKIESLRAIRYEI-------SPDR 72 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-----------------CTTTTTTTTCSEEEE-------CTTS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-----------------ccccccccccceEEE-------CCCC
Confidence 3678999999998876 78999999999876432111 11111 4788888 8899
Q ss_pred ceEEEEeCC---------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccc
Q 014125 139 CVFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 139 ~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
++|++++.+ +.+.+||+.+++. ..+.... .+...+..++|+|||+.|+.+.++.|++||+..+....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~- 148 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE--VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR- 148 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT--CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE-
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc--cccccccccEECCCCCEEEEEECCeEEEEECCCCceEE-
Confidence 999999775 7788999998876 2232221 12224778999999999997777999999997643211
Q ss_pred ccccccCC--CCCC---------CcceEEEEEcCCCCceEEEecCCC---------------------------------
Q 014125 210 KYSTLKGN--KEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQ--------------------------------- 245 (430)
Q Consensus 210 ~~~~~~~~--~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg--------------------------------- 245 (430)
........ ..++ ...+.+++|+| +++.|++++.++
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 227 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence 10000000 0000 11347899999 455666665432
Q ss_pred -eEEEEEcCCceeeEEeecc------ccCeEEEEEccCCCEEEEEec---CCCeEEEEeCCCCceEEEEeecccCCccce
Q 014125 246 -TSAIYREDNMELLYVLHGQ------EGGVTHVQFSRDGNYLYTGGR---KDPYILCWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 246 -~v~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
.|++||+.+++....+..+ ...+..++|+|||++|++... .+..|++||+.++........ .+...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~ 304 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED---ESEAWL 304 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE---ECSSCC
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe---ccCCEE
Confidence 7999999988765556543 567899999999998877652 235799999988754322211 122222
Q ss_pred ----EEEEEcCCCCEEEE--EccCC------cEEEEE-cCCCCe--ecccccccCCeeE-EEEcCCCcEEEEeeCC---c
Q 014125 316 ----ILFDIEPSGRHLGT--GGQDG------LVHIYD-LQTGKW--ISGFQAAADTVNG-FSFHPFLPMAASSSGH---R 376 (430)
Q Consensus 316 ----~~~~~~~~~~~l~~--~~~dg------~i~vwd-~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---~ 376 (430)
..++|+|+|+.|+. +..++ .|++|| ..+++. ...+..+...+.. ++|+|+|+.|+..+.+ +
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 384 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPR 384 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence 36899999997775 44566 577787 344441 4555544444554 6999999998876654 5
Q ss_pred eeeecC
Q 014125 377 RFPVDD 382 (430)
Q Consensus 377 ~~~vw~ 382 (430)
.+++|+
T Consensus 385 ~~~l~~ 390 (723)
T 1xfd_A 385 RRQLYS 390 (723)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 666773
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.4e-24 Score=189.79 Aligned_cols=275 Identities=11% Similarity=0.154 Sum_probs=180.4
Q ss_pred cCCCceeEEEECcCCceEEEecCC-CeEEEEeCC--CCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSED-KTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++.. ...........+..++|
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~------- 91 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------TFAAESALPGSLTHIST------- 91 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------EEEEEEECSSCCSEEEE-------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------eeccccccCCCCcEEEE-------
Confidence 467789999999999998888876 999999987 3321 01111122236777888
Q ss_pred CCCCceEEEEeC-CCcEEEEeccCC---ceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcc
Q 014125 135 DPTSCVFASTTR-DHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 135 ~~~~~~l~~~~~-dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~ 208 (430)
+|++++|++++. ++.|.+||+..+ +....+... ..+.+++|+|++++++ ++ .++.|.+||+...+...
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL------DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCccccccccccCC------CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 778987776654 888999999533 333333222 2577899999998777 45 78999999997633211
Q ss_pred cccc--cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee--eEEee---cc---ccCeEEEEEccC
Q 014125 209 EKYS--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLH---GQ---EGGVTHVQFSRD 276 (430)
Q Consensus 209 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~ 276 (430)
. .. ... ......+..++|+|++..+++++..++.|.+|++.. ++. ...+. .. ...+..++|+|+
T Consensus 166 ~-~~~~~~~---~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 166 A-QDPAEVT---TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp E-EEEEEEE---CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred e-ecccccc---cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 1 00 111 112346788999996555666667899999999953 332 22222 11 235668999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEc--CCCCe--ecccc
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDL--QTGKW--ISGFQ 351 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~~~--~~~~~ 351 (430)
|++|++++..++.|.+||+...............+. .+..++|+|+|++|++++ .++.|.+|++ .+++. +..+.
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 998887665799999999983211111111112222 378899999999888887 5799999955 45543 33333
Q ss_pred cccCCeeEEEEcCCCc
Q 014125 352 AAADTVNGFSFHPFLP 367 (430)
Q Consensus 352 ~~~~~v~~~~~~~~~~ 367 (430)
. .....+++|.|+.+
T Consensus 321 ~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 V-GQGPMWVVVNAHEG 335 (343)
T ss_dssp C-SSSCCEEEEEEEC-
T ss_pred c-CCCCeeEEEEcccC
Confidence 2 24567778877543
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=4.3e-24 Score=188.65 Aligned_cols=269 Identities=10% Similarity=0.063 Sum_probs=187.5
Q ss_pred ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCC-eeeeeeeccccCccCCCCceE-EEEeCCCcE
Q 014125 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDPTSCVF-ASTTRDHPI 150 (430)
Q Consensus 73 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i 150 (430)
++|++++.++.|++||+.+++.... +...+.. .+..++| +|+++.+ +++..++.|
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~~-------s~dg~~l~v~~~~~~~v 58 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKV----------------ITIADAGPTPMVPMV-------APGGRIAYATVNKSESL 58 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEE----------------EECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEE----------------EEcCCCCCCccceEE-------cCCCCEEEEEeCCCCeE
Confidence 5789999999999999987643211 1111111 3667777 7788765 556668899
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-------------cCCeEEEEEcCCCCCcccccccccCC
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.+||+.+++.+..+.......+...+..++|+|++++++++ .++.|.+||+..... . ..+.
T Consensus 59 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~---~~~~-- 132 (337)
T 1pby_B 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-R---KAFE-- 132 (337)
T ss_dssp EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-E---EEEE--
T ss_pred EEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-E---EEEe--
Confidence 99999999887766643211111245689999999888855 479999999975321 1 1111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC---------
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--------- 288 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--------- 288 (430)
. ...+..++|+|+ ++.++++ ++.|.+||+.+++....+..+.. ...+.|+|+++.+++++..++
T Consensus 133 --~-~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 205 (337)
T 1pby_B 133 --A-PRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp --C-CSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred --C-CCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecc
Confidence 1 234677899995 4555555 68999999999988777764431 113378999987776653333
Q ss_pred --------------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc
Q 014125 289 --------------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 289 --------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.|.+||+.+........ ..+...+..++|+|+|++++++ ++.|++||+.+++.+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~- 279 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP- 279 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-
T ss_pred ccccccccccccccceEEEeCCCCCceEeec---CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-
Confidence 46899999875442222 3455678889999999999888 789999999999887777643
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
..+.+++|+|++++|++++.++.+.+|+.
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 56789999999998888865544444443
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=4.7e-23 Score=182.87 Aligned_cols=240 Identities=15% Similarity=0.191 Sum_probs=161.5
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeC---CCcEEEEeccCCceee--eeecccccccccceEEEEECCCCcEEE-EE-c
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~ 192 (430)
.....++| +|+|+ |++++. ++.|.+|++.+++... .+..+. ..+..++|+|++++|+ ++ .
T Consensus 40 ~~p~~~a~-------spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-----~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 40 QNPTYLAL-------SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-----TPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp SCCCCEEE-------CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-----CCCSEEEEETTTTEEEEEETT
T ss_pred CCcceEEE-------ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC-----CCCEEEEECCCCCEEEEEeCC
Confidence 45566677 78898 555544 6899999998776332 222222 2677899999999887 44 6
Q ss_pred CCeEEEEEcCCCCCcccccccccCC-----CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-Cceee--EEeecc
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGN-----KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELL--YVLHGQ 264 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~--~~~~~~ 264 (430)
++.|.+|++...+.. ......... .......+.+++|+|++. ++++...++.|.+|++. +++.. ..+..+
T Consensus 107 ~~~v~v~~~~~~g~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 107 KGTAEVMKIAADGAL-TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TTEEEEEEECTTSCE-EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCEEEEEEeCCCCCe-eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC
Confidence 799999999653321 111111100 011234588999999666 88888889999999998 44432 222222
Q ss_pred -ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC--CceEE-EEeecccC---CccceEEEEEcCCCCEEE-EEccCCcE
Q 014125 265 -EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK--AVQVV-YKLYRSSE---HTNQRILFDIEPSGRHLG-TGGQDGLV 336 (430)
Q Consensus 265 -~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~--~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~dg~i 336 (430)
...+..++|+|+|+++++++..++.|.+|++.. +.... ........ ....+..++|+|+|++|+ +...++.|
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 236788999999998888765789999999875 32111 11111111 114588899999999874 55568999
Q ss_pred EEEEcCC---CCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 337 HIYDLQT---GKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 337 ~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.+|++.. .+.+..+..+...+..++|+|+|++|++++.
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 9999973 2445555556667899999999998888874
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=4.3e-24 Score=207.80 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=186.5
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCc-ccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-YDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+..+.|+ |+.+++++.|+ | +||+.+++.. ..+..+......-.........+...|.+++| +|+ ..+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-------spd-~~~ 95 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-------AGR-GLV 95 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-------TTT-TEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-------CCC-CeE
Confidence 5668888 56677777787 8 9999887652 21111110000000000001112246888999 778 555
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC-----CCCcccccccccC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR-----PGRDFEKYSTLKG 216 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~ 216 (430)
+.+ .++.|++||+.+++....... .. .+.+++|+|+|+.|+.+.++.|++|++.. +.... .......
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~~~-~~-----~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~-~~~~~~~ 167 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLFDT-NE-----ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA-VTIDGTE 167 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEECC-TT-----CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE-SCSCCBT
T ss_pred EEE-ECCEEEEEECCCCceEEccCC-cc-----cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE-eccCCCC
Confidence 554 359999999998876544332 22 57789999999999988899999999976 32211 0000000
Q ss_pred -------CCCCCCcceEEEEEcCCCCceEEEec---------------------------------CCCeEEEEEcCCce
Q 014125 217 -------NKEGQAGIMSAIAFSPTHTGMLAIGS---------------------------------YSQTSAIYREDNME 256 (430)
Q Consensus 217 -------~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------~dg~v~~~d~~~~~ 256 (430)
....+...+.++.|+| +++.|++++ .+..|++||+.+++
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 0000112257899999 555677665 44789999999887
Q ss_pred eeEEee--ccccCeEEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEee-cccCCccceEEEEEcC--CCCE
Q 014125 257 LLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLY-RSSEHTNQRILFDIEP--SGRH 326 (430)
Q Consensus 257 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~ 326 (430)
...... .|...+.+++|+|||+.|++++ .++ .|++||+.++........ ........+..++|+| +|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 654432 4667799999999999999877 565 899999998733222211 1111112345689999 9999
Q ss_pred EEEEccCCcEEEEEcC-CCCeecccccccCCeeE-EEEcCCCcEEEEeeCC
Q 014125 327 LGTGGQDGLVHIYDLQ-TGKWISGFQAAADTVNG-FSFHPFLPMAASSSGH 375 (430)
Q Consensus 327 l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d 375 (430)
+++++.||.++||.++ +++.+..+..|...+.. ++|+|+++.|+.++.+
T Consensus 326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 9999999999999886 67777778777777877 7999999977666554
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=3.4e-23 Score=182.49 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=176.2
Q ss_pred cCCCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+...+ +++|+|+|++|++++. ++.|.+||+.+++.. ......+..+..+++| +|
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----------------~~~~~~~~~~~~~~~~-------s~ 93 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----------------VVAIQEGQSSMADVDI-------TP 93 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----------------EEEEEECSSCCCCEEE-------CT
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----------------EEecccCCCCccceEE-------CC
Confidence 345556 9999999997666655 889999999876430 1111122234444777 78
Q ss_pred CCceEEEEeCCC---cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCe-EEEEEcCCCCCcccc
Q 014125 137 TSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS-VRVFDVHRPGRDFEK 210 (430)
Q Consensus 137 ~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~-i~v~d~~~~~~~~~~ 210 (430)
++++++++..++ .|.+||+.+++.+..+.... .+.+++|+|++++++ ++ .++. |.+|++...+.....
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 999998655553 89999999998877766533 567999999998665 44 5577 999999864432111
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee---eEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.... .........++|+|++..+++++..++.|.+||+.+++. +..+.. ...+..++|+|+|+++++++..+
T Consensus 168 ~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 168 GQEF----ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp EEEE----ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSE
T ss_pred CCcc----ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCC
Confidence 1011 122344789999996655677777899999999998887 666663 46678999999999888877568
Q ss_pred CeEEEEeCCCCceEEEEeeccc--CCc---cceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCe
Q 014125 288 PYILCWDLRKAVQVVYKLYRSS--EHT---NQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKW 346 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~ 346 (430)
+.|.+||+.++........... .+. .....++|+|+|++|++++ .++.|.+||+.....
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 8999999988754211111101 111 1224589999999886555 567999999986543
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.9e-23 Score=203.22 Aligned_cols=282 Identities=10% Similarity=0.132 Sum_probs=192.0
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.+++|||| +.++.+. ++.|++||+.+++.. ....+...+.+++| +|||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~------------------~l~~~~~~~~~~~~-------SpdG~~ 134 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT------------------YLFDTNEETASLDF-------SPVGDR 134 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE------------------EEECCTTCCTTCEE-------CTTSSE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE------------------EccCCcccccCCcC-------CCCCCE
Confidence 56999999999 5555553 589999999865321 12223456778888 889999
Q ss_pred EEEEeCCCcEEEEeccC-----Cceeeeeeccccc---------ccccceEEEEECCCCcEEEEE---------------
Q 014125 141 FASTTRDHPIHLWDATT-----GLLRCTYRAYDAV---------DEITAAFSVAFNPTGTKIFAG--------------- 191 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~--------------- 191 (430)
|+++ .++.|++|++.+ ++........... ++...+.++.|+|||++|+.+
T Consensus 135 la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 135 VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 9985 679999999998 7665443322210 011125789999999999844
Q ss_pred -------------------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----eE
Q 014125 192 -------------------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TS 247 (430)
Q Consensus 192 -------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v 247 (430)
.+..|++||+..+... .+ .....+...+.+++|+| +++.|++++.++ .|
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-----~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v 286 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-----YL-QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKV 286 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-----EC-CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEE
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-----ee-ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEE
Confidence 2367999999763210 11 11124566799999999 555677766664 89
Q ss_pred EEEEcCCceeeEEee-c-ccc---CeEEEEEcc--CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEE-EE
Q 014125 248 AIYREDNMELLYVLH-G-QEG---GVTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRIL-FD 319 (430)
Q Consensus 248 ~~~d~~~~~~~~~~~-~-~~~---~i~~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~ 319 (430)
++||+.+++....+. . +.. .+.+++|+| +|++++++. .|+.+++|++.........+ ..+...+.. ++
T Consensus 287 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-~~g~~~l~~~~~~~~~~~~l---~~~~~~v~~~~~ 362 (706)
T 2z3z_A 287 NAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-RDGWNHLYLYDTTGRLIRQV---TKGEWEVTNFAG 362 (706)
T ss_dssp EEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-TTSSCEEEEEETTSCEEEEC---CCSSSCEEEEEE
T ss_pred EEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-cCCccEEEEEECCCCEEEec---CCCCeEEEeeeE
Confidence 999999883333332 1 222 246789999 999888887 88999999876322333233 345556766 79
Q ss_pred EcCCCCEEEEEc-cCC----cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC----ceeeecCC
Q 014125 320 IEPSGRHLGTGG-QDG----LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH----RRFPVDDF 383 (430)
Q Consensus 320 ~~~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~~~vw~~ 383 (430)
|+|+|+.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|+|+|++++..+.+ +.+.+|+.
T Consensus 363 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 363 FDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp ECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 999998776554 444 67778887766 33343 66789999999999988776543 45777754
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=4.3e-24 Score=215.93 Aligned_cols=302 Identities=13% Similarity=0.073 Sum_probs=215.3
Q ss_pred eeecccCCCce-------eEEEECcCCceEEEecCC------CeEEEEeCCCCCCcccccccc--c--------------
Q 014125 53 FRTSSIPNNFL-------KGIKWSPDGSSFLTSSED------KTLRIFSLPENGISYDVNACS--L-------------- 103 (430)
Q Consensus 53 ~~~~~~h~~~v-------~~~~~sp~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~--~-------------- 103 (430)
.+.+..|...+ .+++|||||+.+++++.+ ..|.+|++.++....-..... .
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 34677888888 999999999977877754 357788876554211100000 0
Q ss_pred -----------------ccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccC-Cceeeeee
Q 014125 104 -----------------AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYR 165 (430)
Q Consensus 104 -----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~ 165 (430)
..... ........|...+.++.| +++ .++++++.++.+.+|.+.. +.....+.
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~~~~-------s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVI-------VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEE-------ETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred CccccccccCCCcCCEEEECCC-CCeEECcCCCCcccceEE-------eCC-EEEEEEeccCceEEEEEeCCCCcceEec
Confidence 00000 011112456677888888 445 5677888899999998754 33333333
Q ss_pred cccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC-------CCCCCcceEEEEEc-CCCCce
Q 014125 166 AYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN-------KEGQAGIMSAIAFS-PTHTGM 237 (430)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~-~~~~~~ 237 (430)
.+. .+...+|+|+|+.|+.+.++.|++|++... ... .+... ...+...+.+++|+ | ++..
T Consensus 243 ~~~------~~~~~~~SpDG~~la~~~~~~i~~~d~~~~--~l~---~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~ 310 (1045)
T 1k32_A 243 SFT------DYYPRHLNTDGRRILFSKGGSIYIFNPDTE--KIE---KIEIGDLESPEDRIISIPSKFAEDFSPL-DGDL 310 (1045)
T ss_dssp CCC------SSCEEEEEESSSCEEEEETTEEEEECTTTC--CEE---ECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGC
T ss_pred CCC------CcceeeEcCCCCEEEEEeCCEEEEecCCce--Eee---eeccCcccccccccccccccceeeecCC-CCCE
Confidence 322 345679999999999778999999998321 111 11110 01134468899999 9 5556
Q ss_pred EEEecCCCeEEEEEcCCceeeEEeecccc-CeEEEEEccCCCEEEEEecCCCeEE-EEeCCCCceEEEEeecccCCccce
Q 014125 238 LAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYIL-CWDLRKAVQVVYKLYRSSEHTNQR 315 (430)
Q Consensus 238 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v 315 (430)
+++++ ++.|++|+..+++... +..|.. .+..++|+ +|+.|++++ .++.+. +||+...... .+ ..+...+
T Consensus 311 la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~~~~~~--~l---~~~~~~~ 381 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYRTGKAE--KF---EENLGNV 381 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETTTCCEE--EC---CCCCCSE
T ss_pred EEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECCCCCce--Ee---cCCccce
Confidence 66666 8899999998776543 555666 89999999 999999998 688888 9999876422 22 2566789
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCc----------eeeecCCC
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHR----------RFPVDDFE 384 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----------~~~vw~~~ 384 (430)
..++|+|+|++|++++.++.|++||+.+++....+.+|...+.+++|+|+|++|++++.++ .+++|+..
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999999999999999999999999998887778989999999999999998887644 88888653
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.1e-23 Score=206.02 Aligned_cols=280 Identities=11% Similarity=0.108 Sum_probs=194.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCC---CCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.|.+++|||||++|++++. +.|++||+.++ ... ....+...+..++| +|||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~-------SPDG 163 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKL-------SPKG 163 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEE-------CTTS
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccC-------CCCC
Confidence 4889999999999999887 89999999865 211 12223467889999 8899
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeeccccc-----------ccccceEEEEECCCCcEEEE-EcCC------------
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----------DEITAAFSVAFNPTGTKIFA-GYNK------------ 194 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~-~~d~------------ 194 (430)
++|++++. +.|++||+.+++........... +....+.+++|+|||++|+. +.|+
T Consensus 164 ~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~ 242 (741)
T 2ecf_A 164 GFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY 242 (741)
T ss_dssp SEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred CEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence 99998874 58999999988765543322210 00012468999999998884 4444
Q ss_pred ---------------------eEEEEEcCC-CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-----CCCeE
Q 014125 195 ---------------------SVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-----YSQTS 247 (430)
Q Consensus 195 ---------------------~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~v 247 (430)
.|++||+.. +... .+. ....+...+..++| |++ ..|++++ .+..|
T Consensus 243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-----~~~-~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ-----WID-LGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE-----EEC-CCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEE
T ss_pred CCcccceEeecCCCCCCCCeeEEEEEECCCCCceE-----Eec-CCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEE
Confidence 788888865 4321 111 01246678999999 955 4555443 35789
Q ss_pred EEEEcCCceeeEEeecccc----CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEE-EEcC
Q 014125 248 AIYREDNMELLYVLHGQEG----GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILF-DIEP 322 (430)
Q Consensus 248 ~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ 322 (430)
++||+.+++....+..+.. .+..++|+|+|+++++++ .||.+++|.+..... ...+ ..+...+..+ .|+|
T Consensus 315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~-~~g~~~l~~~~~~~~-~~~l---~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE-RTGFQHLYRIDSKGK-AAAL---THGNWSVDELLAVDE 389 (741)
T ss_dssp EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC-TTSSCEEEEECSSSC-EEES---CCSSSCEEEEEEEET
T ss_pred EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec-CCCccEEEEEcCCCC-eeee---eecceEEEeEeEEeC
Confidence 9999999887776665543 456899999999777777 899888887653223 3233 3456667776 5999
Q ss_pred CCCEEE-EEccCC--cEEEEEcCC-CCeecccccccCCeeEEEEcCCCcEEEEeeCC----ceeeecC
Q 014125 323 SGRHLG-TGGQDG--LVHIYDLQT-GKWISGFQAAADTVNGFSFHPFLPMAASSSGH----RRFPVDD 382 (430)
Q Consensus 323 ~~~~l~-~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~~~vw~ 382 (430)
+|+.|+ +++.++ .++||++.. +.....+.. ...+..++|+|++++|+....+ ..+.+++
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 998765 555555 899999874 555566654 5678899999999988776443 3455553
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.1e-23 Score=212.96 Aligned_cols=286 Identities=14% Similarity=0.063 Sum_probs=213.0
Q ss_pred eecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
..+.+|.+.+.++.|+++ .++++++.|+.++||.+..... .......+ ..+...+|
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------~~~~l~~~-~~~~~~~~------ 252 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------DLRKHTSF-TDYYPRHL------ 252 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------SCEECCCC-CSSCEEEE------
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------cceEecCC-CCcceeeE------
Confidence 345789999999999998 6777888899999998653110 00011112 23455677
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc------cccccceEEEEEC-CCCcEEEEEcCCeEEEEEcCCCCC
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA------VDEITAAFSVAFN-PTGTKIFAGYNKSVRVFDVHRPGR 206 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~-~~~~~l~~~~d~~i~v~d~~~~~~ 206 (430)
+|+|+.|+++ .++.|.+|++...+.. .+..... ..+...+.+++|+ |+|+.|+.+.++.|.+|++.....
T Consensus 253 -SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~ 329 (1045)
T 1k32_A 253 -NTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV 329 (1045)
T ss_dssp -EESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBE
T ss_pred -cCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCce
Confidence 6789988887 4889999999544333 3332110 0122357899999 999999877699999999865311
Q ss_pred cccccccccCCCCCCCc-ceEEEEEcCCCCceEEEecCCCeEE-EEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 207 DFEKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGSYSQTSA-IYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~-~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
.. ...+.. .+..++|+ ++ ..++.++.++.+. +||+.+++... +..|...+..++|+|+|++|++++
T Consensus 330 -----~~----~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 330 -----LK----VPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp -----EE----CSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEE
T ss_pred -----EE----ccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEEC
Confidence 11 234455 78999999 54 4666666688898 99998776544 337778899999999999999999
Q ss_pred cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC----------cEEEEEcCCCCeeccccccc
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG----------LVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~vwd~~~~~~~~~~~~~~ 354 (430)
.++.|++||+.++.... .. ..|...+..++|+|||++|++++.++ .|++||+.+++ +..+..|.
T Consensus 398 -~~~~v~~~d~~tg~~~~-~~---~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 398 -DRFEIMTVDLETGKPTV-IE---RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp -TTSEEEEEETTTCCEEE-EE---ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred -CCCeEEEEECCCCceEE-ec---cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 89999999998875432 21 25677788999999999999887654 89999999887 66677788
Q ss_pred CCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 355 DTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
..+..++|+|+|++|++++.++...+|+..
T Consensus 472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 889999999999999999998888877643
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.4e-23 Score=181.65 Aligned_cols=239 Identities=13% Similarity=0.077 Sum_probs=171.2
Q ss_pred ecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCC-CCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.... ....+...+.+++|
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~----------------~~~~~~~~~~~~~~------ 92 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV----------------DTGFATICNNDHGI------ 92 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC----------------CCTTCCCBCSCCEE------
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe----------------ccccccccccceEE------
Confidence 3456888999999999999999987 78999999987 532111 11112356788888
Q ss_pred cCCCCceEEEEe--CCCcEEEEec--cCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCc
Q 014125 134 SDPTSCVFASTT--RDHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 134 ~~~~~~~l~~~~--~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~ 207 (430)
+|++++|++++ .++...+|.+ .+++ ...+.... .+..++|+|+++.|+ ++ .++.+++|+++.....
T Consensus 93 -spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 93 -SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL------PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp -CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS------SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred -CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC------CccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 77999999998 4455666655 4443 22222221 577899999999887 44 7899999997643222
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-CceeeEEeeccccCeEEEEEccCCCEEEEEecC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 286 (430)
.. ....+...+.+++|+|++..+++++..++.+++|++. .+.....+..|...+.+++|+|+|++|++++ .
T Consensus 165 ~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~ 236 (297)
T 2ojh_A 165 ET-------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS-Y 236 (297)
T ss_dssp EE-------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE-E
T ss_pred ce-------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE-c
Confidence 11 1234556799999999555444455568999999886 4556667777778899999999999998887 4
Q ss_pred C-----------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 287 D-----------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 287 d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
+ +.|++||+.+...... .....+...+..++|+|+|++|++++.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETL--FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEE--EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCCcccccCceEEEEEecCCCCceee--eccCCCCcccccceECCCCCEEEEEEecc
Confidence 4 5699999987653321 22235667788899999999998887664
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=9.8e-24 Score=200.47 Aligned_cols=268 Identities=13% Similarity=0.049 Sum_probs=188.0
Q ss_pred CCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
..+|++++|+|||+.||+++. ||+++||+++++.. ..+...+...+..++| +||
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-----------------~~lt~~~~~~~~~~~~-------spd- 75 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-----------------VKLNREPINSVLDPHY-------GVG- 75 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-----------------EECCSSCCSEECEECT-------TCS-
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-----------------EeeecccccccccccC-------CCC-
Confidence 446999999999999999887 99999999754321 1111222257888999 667
Q ss_pred ceEEEEeC---CCcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCCccccc
Q 014125 139 CVFASTTR---DHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 139 ~~l~~~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+++++++. +....+|.+.. ......+.... .+...+|+|+++. ++++.++.+.+||+.++.. .
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~-- 145 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--R-- 145 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--E--
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCccccccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--E--
Confidence 67777765 45566665543 22112222221 2335577777753 4455666677999976421 1
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCC----CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
.+. .+.. .+++|+| +++.+++++.+ +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++. .+
T Consensus 146 -~l~----~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~ 215 (582)
T 3o4h_A 146 -ELA----RLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TA 215 (582)
T ss_dssp -EEE----EESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CS
T ss_pred -Eee----cCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CC
Confidence 111 1111 7889999 56677777666 78999999887765 5667888899999999999999776 78
Q ss_pred C--eEEEEeCCCCceEEEEeecccCCccceEEEE--------EcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCe
Q 014125 288 P--YILCWDLRKAVQVVYKLYRSSEHTNQRILFD--------IEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV 357 (430)
Q Consensus 288 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 357 (430)
+ .|++||+.++... .. ..+...+..++ |+|||.++++++.|+.+++|++ ++... .+.+.|
T Consensus 216 ~~~~i~~~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v 285 (582)
T 3o4h_A 216 REARLVTVDPRDGSVE--DL---ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNH 285 (582)
T ss_dssp SCEEEEEECTTTCCEE--EC---CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEE
T ss_pred CeeEEEEEcCCCCcEE--Ec---cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCce
Confidence 8 8999999887543 22 34444555555 9999999999999999999999 66554 234678
Q ss_pred eEEEEcCCCcEEEEeeCCc---eeeecCC
Q 014125 358 NGFSFHPFLPMAASSSGHR---RFPVDDF 383 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~~~d~---~~~vw~~ 383 (430)
.+++|+ +++++++++.+. .+.+|+.
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 999999 999999888764 3666654
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=7.9e-23 Score=199.52 Aligned_cols=291 Identities=10% Similarity=0.037 Sum_probs=188.7
Q ss_pred eecccCCC---ceeEEEECcCCceEEEecCC---------CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCe
Q 014125 54 RTSSIPNN---FLKGIKWSPDGSSFLTSSED---------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121 (430)
Q Consensus 54 ~~~~~h~~---~v~~~~~sp~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (430)
..+.+|.. .|.+++|||||++||+++.+ +.+.+||+.+++. ..+.. ...+...
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~--------------~~~~~~~ 115 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDP--------------PEVSNAK 115 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCC--------------TTCCSCC
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccC--------------Ccccccc
Confidence 34455554 49999999999999999764 7888999987643 11100 0112234
Q ss_pred eeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccc----c---------ccceEEEEECCCCcEE
Q 014125 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD----E---------ITAAFSVAFNPTGTKI 188 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~---------~~~v~~~~~~~~~~~l 188 (430)
+..++| ||||+.|+.++. +.|++||+.+++.......+.... . ...+.+++|+|||+.|
T Consensus 116 ~~~~~~-------SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 116 LQYAGW-------GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp CSBCCB-------CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ccccEE-------CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 777888 889999999886 789999999987766554322100 0 0123789999999998
Q ss_pred EE-EcCC----------------------------------eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC
Q 014125 189 FA-GYNK----------------------------------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233 (430)
Q Consensus 189 ~~-~~d~----------------------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 233 (430)
+. +.++ .|++||+..+.... .+. .......+...+..++|+|+
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMM-PPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECC-CCCCGGGSSEEEEEEEESSS
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE-Eee-CCccCCCccceeEEEEEeCC
Confidence 84 3332 78889887643211 100 00011123567899999995
Q ss_pred CCceEEEecC----CCeEEEEEcCCceeeEEeecc-ccCe----EEEEEccCCCEEEEE-ecCCC------eEEEEe-CC
Q 014125 234 HTGMLAIGSY----SQTSAIYREDNMELLYVLHGQ-EGGV----THVQFSRDGNYLYTG-GRKDP------YILCWD-LR 296 (430)
Q Consensus 234 ~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l~~~-~~~d~------~i~i~d-~~ 296 (430)
++++++... +..|++||+.+++....+..+ ...+ ..++|+|+|+.|+.. +..++ .|.+|| ..
T Consensus 266 -g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 266 -TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (723)
T ss_dssp -SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred -CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC
Confidence 456655543 367999999988876655433 3333 378999999987764 43667 577777 33
Q ss_pred CCce-EEEEeecccCCccceE-EEEEcCCCCEEEEEccC---CcEEEEEcCCCC--eeccccc---ccCCeeEEEEcCCC
Q 014125 297 KAVQ-VVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQD---GLVHIYDLQTGK--WISGFQA---AADTVNGFSFHPFL 366 (430)
Q Consensus 297 ~~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~--~~~~~~~---~~~~v~~~~~~~~~ 366 (430)
.... ....+ ......+. .++|+|+|+.|+..+.+ +.+++|++.... ....+.. |...+..++|+|+|
T Consensus 345 ~~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 345 NSSNDNIQSI---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp CSSSCCCCBS---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred CCCccceeEe---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 3320 01111 12223344 36999999998765554 789999987432 3334443 56678999999999
Q ss_pred cEEEEee
Q 014125 367 PMAASSS 373 (430)
Q Consensus 367 ~~l~s~~ 373 (430)
++|+...
T Consensus 422 ~~l~~~~ 428 (723)
T 1xfd_A 422 DFFLLKC 428 (723)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 9877654
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.9e-21 Score=173.50 Aligned_cols=285 Identities=12% Similarity=0.115 Sum_probs=182.8
Q ss_pred CCceEEEec----CCCeEEEEeCCC--CCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 71 DGSSFLTSS----EDKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 71 ~~~~l~s~~----~dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
...+++.|+ .++.|.+|+++. +.. ...... +......++| +|++++|+++
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~----------------~~~~~~-~~~~p~~l~~-------spdg~~l~~~ 67 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGES----------------LPLSDA-EVANPSYLIP-------SADGKFVYSV 67 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCE----------------EEEEEE-ECSCCCSEEE-------CTTSSEEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCE----------------EEeecc-cCCCCceEEE-------CCCCCEEEEE
Confidence 334555553 467899997753 211 111111 4455666777 8899999999
Q ss_pred eCC----CcEEEEeccC--CceeeeeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCCccccccccc-
Q 014125 145 TRD----HPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLK- 215 (430)
Q Consensus 145 ~~d----g~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~- 215 (430)
+.+ +.|.+|++.. ++......... ....+..+++ +++++++ + .++.|.+|++...+..........
T Consensus 68 ~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~---~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 142 (361)
T 3scy_A 68 NEFSKDQAAVSAFAFDKEKGTLHLLNTQKT---MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF 142 (361)
T ss_dssp ECCSSTTCEEEEEEEETTTTEEEEEEEEEC---SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC
T ss_pred EccCCCCCcEEEEEEeCCCCcEEEeeEecc---CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc
Confidence 886 7999999876 43322222111 1114566777 7777774 4 688999999976433211111000
Q ss_pred -C----CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee------e-------EEeeccccCeEEEEEccCC
Q 014125 216 -G----NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------L-------YVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 216 -~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~------~-------~~~~~~~~~i~~~~~~~~~ 277 (430)
. ....+...+.+++|+|++..+++++..++.|.+|++..... + .....+...+..++|+|+|
T Consensus 143 ~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg 222 (361)
T 3scy_A 143 KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG 222 (361)
T ss_dssp CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence 0 01122344688999996555666666789999998875431 1 1122234567899999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEE-EEeecccCCccceEEEEEcCCCCEEEEEccC--CcEEEEEcC--CCC--eeccc
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVV-YKLYRSSEHTNQRILFDIEPSGRHLGTGGQD--GLVHIYDLQ--TGK--WISGF 350 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~--~~~--~~~~~ 350 (430)
+++++++..++.|.+||+.++.... ........+......++|+|+|++|+++..+ +.|.+|+++ +++ .+..+
T Consensus 223 ~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 9988887568999999998653221 1222223334556899999999998766654 889999996 455 34444
Q ss_pred ccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeec
Q 014125 351 QAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFL 401 (430)
Q Consensus 351 ~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~ 401 (430)
.. ...+.+++|+|+|++|++++. .++.|.+|++.
T Consensus 303 ~~-g~~~~~~~~spdg~~l~~~~~----------------~~~~v~v~~~d 336 (361)
T 3scy_A 303 LT-GIHPRNFIITPNGKYLLVACR----------------DTNVIQIFERD 336 (361)
T ss_dssp EC-SSCCCEEEECTTSCEEEEEET----------------TTTEEEEEEEC
T ss_pred cC-CCCCceEEECCCCCEEEEEEC----------------CCCCEEEEEEE
Confidence 43 457889999999998888873 35677776655
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=6e-22 Score=176.69 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=175.9
Q ss_pred CCCceeEEEECcCCceEEEecCC----CeEEEEeCCCC-CCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~d----g~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
|...+..++|+|||++|++++.+ +.|.+|+++.. .... .......++.....+++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--------------~~~~~~~~~~~p~~~~~------ 107 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--------------LLNTQKTMGADPCYLTT------ 107 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE--------------EEEEEECSSSCEEEEEE------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE--------------EeeEeccCCCCcEEEEE------
Confidence 66778899999999999999886 79999988642 1000 00011112233444444
Q ss_pred cCCCCceEEEEe-CCCcEEEEeccCCceeeeeec---ccc------cccccceEEEEECCCCcEEE-EE-cCCeEEEEEc
Q 014125 134 SDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRA---YDA------VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDV 201 (430)
Q Consensus 134 ~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~---~~~------~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~ 201 (430)
++++|++++ .++.|.+|++.....+..... +.. ......+.+++|+|++++++ ++ .++.|.+|++
T Consensus 108 ---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 108 ---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp ---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 566666665 578999999975433322111 100 01122457899999999776 44 5789999999
Q ss_pred CCCCC----c-ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee--eEEee---ccccCeEEE
Q 014125 202 HRPGR----D-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLH---GQEGGVTHV 271 (430)
Q Consensus 202 ~~~~~----~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~---~~~~~i~~~ 271 (430)
..... . +................+..++|+|++..++++...++.|.+|++.+++. +..+. .+......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 76432 1 11000000001122345789999995554445555799999999987654 22222 223456799
Q ss_pred EEccCCCEEEEEecC-CCeEEEEeCC--CCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEE--cCCCC
Q 014125 272 QFSRDGNYLYTGGRK-DPYILCWDLR--KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYD--LQTGK 345 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd--~~~~~ 345 (430)
+|+|+|++|+++... ++.|.+|++. ++.... ...... ...+..++|+|+|++|++++ .++.|.+|+ ..+++
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~--~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK--VGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE--EEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE--eeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 999999999888744 5899999996 232211 111122 45677899999999888887 578899965 45677
Q ss_pred eeccc-ccccCCeeEEEEc
Q 014125 346 WISGF-QAAADTVNGFSFH 363 (430)
Q Consensus 346 ~~~~~-~~~~~~v~~~~~~ 363 (430)
+.... ..+...+.++.|.
T Consensus 342 ~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 342 LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECSCCEECSSEEEEEEE
T ss_pred EeecceeeeCCCCeEEEEc
Confidence 65443 2345578888885
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.1e-22 Score=177.94 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=179.9
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeC-------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTR-------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG 191 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 191 (430)
..+..++| +|+++.+++++. ++.|.+||..+++....+.... .+..++|+|+++.++ ++
T Consensus 41 ~~~~~~~~-------s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 41 KGAYEMAY-------SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL------KPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SSEEEEEE-------ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS------CCCSEEEETTTTEEEEEE
T ss_pred cCccceEE-------CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC------CcceEEECCCCCEEEEEe
Confidence 45677888 778888887774 5689999999998888776533 466899999999666 44
Q ss_pred -cCCeEEEEEcCCCCCcccccccccCC--CCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEeeccccC
Q 014125 192 -YNKSVRVFDVHRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGG 267 (430)
Q Consensus 192 -~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~ 267 (430)
.++.|.+||..+..... ........ .......+.+++|+|++..+++++ ..++.|.+||..+++....+..+...
T Consensus 108 ~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 186 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKG-RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM 186 (353)
T ss_dssp TTTTEEEEEETTTCCEEE-EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT
T ss_pred cCCCEEEEEeCCCCeeEE-EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc
Confidence 57999999997643211 11000000 001112378899999655444444 35889999999999988888756666
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCCCCe
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQTGKW 346 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~ 346 (430)
+.+++|+|+++++++++ .++.|.+||+.+............++...+..++|+|+|+++++++. ++.|.+||+.+++.
T Consensus 187 ~~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp CCCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 88999999999999998 89999999999875443222212234566888999999997776655 48999999999998
Q ss_pred ecccccccCCeeEEEEcCCCcEEEEee-CCceeeecCCC
Q 014125 347 ISGFQAAADTVNGFSFHPFLPMAASSS-GHRRFPVDDFE 384 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~~~vw~~~ 384 (430)
+..+.... ...++|+|+++.++.++ .++.+.+||..
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 87776543 36799999999665555 56777777653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=6.1e-22 Score=175.68 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=169.7
Q ss_pred cCCCceeEEEECcCCceEEEecC---CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+...+..++|+|||+ |++++. ++.|++|++.++... .......+...+..++|
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------~~~~~~~~~~~p~~~a~------- 93 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------KLNTVVAPGTPPAYVAV------- 93 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------EEEEEEEESCCCSEEEE-------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------EeeeeecCCCCCEEEEE-------
Confidence 4456688899999999 555544 689999999654210 01111223456677777
Q ss_pred CCCCceEEEEe-CCCcEEEEeccC-Ccee--eeeeccccc----ccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCC
Q 014125 135 DPTSCVFASTT-RDHPIHLWDATT-GLLR--CTYRAYDAV----DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPG 205 (430)
Q Consensus 135 ~~~~~~l~~~~-~dg~i~vwd~~~-~~~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~ 205 (430)
+|++++|++++ .++.|.+|++.. +... ..+...... .....+.+++|+|++++++++ .++.|.+|++...+
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 77899888887 678999999963 3322 222111100 011247789999999955555 57899999998422
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee--eEEeeccc------cCeEEEEEcc
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLHGQE------GGVTHVQFSR 275 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~~~~------~~i~~~~~~~ 275 (430)
. ........ ......+..++|+|++..+++++..++.|.+|++.. ++. ...+.... ..+..++|+|
T Consensus 174 ~-~~~~~~~~---~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 174 Q-LSEQSVLT---MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp C-EEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred c-EEEeeeEE---cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 2 11111111 112235678999996555666678899999999874 443 22332222 3488899999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-CcEEEE--EcCCCCee
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-GLVHIY--DLQTGKWI 347 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw--d~~~~~~~ 347 (430)
+|++|++++..++.|.+|++...... ........+...+..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHL-TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCE-EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcE-EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99988766647899999999743211 1222223344567899999999988887764 889999 44566654
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=7.6e-22 Score=175.12 Aligned_cols=278 Identities=11% Similarity=-0.003 Sum_probs=175.7
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE-EE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AS 143 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~ 143 (430)
.+++++++.++++++.++.|++||+.+++.... +.......+..++| +|+++.+ ++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~-------s~dg~~~~v~ 60 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS----------------CVMPDKFGPGTAMM-------APDNRTAYVL 60 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEE----------------EECSSCCSSCEEEE-------CTTSSEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEE----------------EecCCCCCCceeEE-------CCCCCEEEEE
Confidence 457888999999999999999999987643211 11111113556777 7788765 45
Q ss_pred EeCCCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCCcEEEEE-c------------CCeEEEEEcCCCCCccc
Q 014125 144 TTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-Y------------NKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 144 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~------------d~~i~v~d~~~~~~~~~ 209 (430)
+..++.|.+||+.+++....+...... .....+..++|+|++++++++ . ++.|.+||+.+... ..
T Consensus 61 ~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~ 139 (349)
T 1jmx_B 61 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AK 139 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BC
T ss_pred eCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-cc
Confidence 567899999999999887766543210 001246789999999998855 3 48999999975211 11
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc-----------------------
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----------------------- 266 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~----------------------- 266 (430)
.... ..+...+.+++|+|++. +++ ++ +.|.+||..+++....+..+..
T Consensus 140 ~~~~-----~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 140 PVRT-----FPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp CSEE-----EECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred eeee-----ccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 0011 11223578899999554 444 43 4499999999887776653320
Q ss_pred -CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEEccCCcEEEEEcCCC
Q 014125 267 -GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 267 -~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
....+++++++............+..+|..++....... ......+..++|+| +|++++++ ++.|++||+.++
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 234566666543211111001112224544443222111 22455678899999 99999888 889999999999
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+.+..+.. ...+.+++|+|++++|++++.++.+.+|
T Consensus 286 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 286 KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEE
Confidence 88777763 3457899999999988887644333333
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.2e-21 Score=176.29 Aligned_cols=319 Identities=12% Similarity=0.076 Sum_probs=193.7
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...++.+++++++.+|++++.|+ ++||+.............. .............+...|.+++| +|+++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~-------spdg~ 105 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP--NKIVDKVQGLLVPMKFPIHHLAL-------SCDNL 105 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT--TCEEECCCCEEECCSSCEEEEEE-------CTTSC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc--ccccccCccccccCCCcccEEEE-------cCCCC
Confidence 44689999999999999999987 8998764221100000000 00001111223455678999999 77899
Q ss_pred eEE----EEeCCCcEEEEeccCC--------ceeeeeecccccccccceEEEEECCC-CcEEE-EEcCCeEEEEEcCCCC
Q 014125 140 VFA----STTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF-AGYNKSVRVFDVHRPG 205 (430)
Q Consensus 140 ~l~----~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~-~~~d~~i~v~d~~~~~ 205 (430)
+|+ +++.|+.|++||+.++ +.+..+... ..|...|.+++|+|+ +.+|+ ++.|++|++||++...
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL--KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC--CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc--CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 999 7889999999998765 222222221 123448999999998 67777 5699999999998741
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-------ccCeEEEEEccCCC
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------EGGVTHVQFSRDGN 278 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~ 278 (430)
. .....+|...+.+++|+| ++.+|++|+.||+|++||.+ ++....+..| ...|.+++|++++.
T Consensus 184 ~--------~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 184 K--------VCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp E--------EEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred c--------eeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 1 111235677899999999 57799999999999999998 5544444433 23799999999988
Q ss_pred EEEEEecCCC------eEEEEeCCCCc----eEEEEeecc----cCCccceEEEEEcCCCCEEEEEcc-CCcEEEEEcCC
Q 014125 279 YLYTGGRKDP------YILCWDLRKAV----QVVYKLYRS----SEHTNQRILFDIEPSGRHLGTGGQ-DGLVHIYDLQT 343 (430)
Q Consensus 279 ~l~~~~~~d~------~i~i~d~~~~~----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 343 (430)
++++.+..+| .+++|+++... ......... .....+-..+.+-++.+++++++. .+.|.|.....
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 8776553554 38999998652 111121111 122223333444466666555543 44466665432
Q ss_pred CC--e---------ecccc----cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecc
Q 014125 344 GK--W---------ISGFQ----AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 344 ~~--~---------~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~ 402 (430)
.. . ...+. .......++++.-....-+....+. .+--...|....+||.+..|.+-.
T Consensus 334 ~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~--~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 334 DQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEK--TLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp TSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTE--EECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccc--cCCCCCEEEEECCCCEEEEEEEEe
Confidence 11 0 00111 1222345555543222111222221 111334566778899999998875
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=4.1e-22 Score=179.62 Aligned_cols=278 Identities=13% Similarity=0.067 Sum_probs=180.2
Q ss_pred ecccCCCceeE-----EEECcCCceEEEecC-CCe--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 55 TSSIPNNFLKG-----IKWSPDGSSFLTSSE-DKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 55 ~~~~h~~~v~~-----~~~sp~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
.+..|...... .+|||||++|+.++. +|. |.+||+.+++.. .+...+...+..++
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------~lt~~~~~~~~~~~ 87 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------QLTEGRGDNTFGGF 87 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-----------------ECCCSSCBCSSSCE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-----------------EeeeCCCCCccceE
Confidence 45555554544 889999999998887 664 888888765321 11112223344566
Q ss_pred eccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceE--EEEECCCCcEEEEE-------------
Q 014125 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF--SVAFNPTGTKIFAG------------- 191 (430)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~------------- 191 (430)
| +|+++.|+.++.++.|++||+.+++.......+.. .+. ...++|+++++++.
T Consensus 88 ~-------spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 88 L-------SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE-----WVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp E-------CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred E-------cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh-----cccccceeECCCCCeeccccccCccccccccc
Confidence 7 88999999999999999999999987766654432 222 23458999988732
Q ss_pred ----------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcC-CCCceEEEecC-----CCeEEEEEcCCc
Q 014125 192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSY-----SQTSAIYREDNM 255 (430)
Q Consensus 192 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~-----dg~v~~~d~~~~ 255 (430)
.+..|.+||+.++.. . .+ ..+...+..+.|+| ++..++++... ...|.++|...+
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~--~---~l----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGES--T---VI----LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCE--E---EE----EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred chhhhhhccCCcceEEEEECCCCce--E---Ee----ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 236789999876421 1 11 12334588999999 66544444332 337888888765
Q ss_pred eeeEEeeccc--cCeEEEEEccCCCEEEEEecCCC----eEEEEeCCCCceEEEEeecccCCccc---eEEEEEcCCCCE
Q 014125 256 ELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDP----YILCWDLRKAVQVVYKLYRSSEHTNQ---RILFDIEPSGRH 326 (430)
Q Consensus 256 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~ 326 (430)
+.. .+..+. ..+..++|+|+|+.|+..+..++ .|++||+.++........ ..+... .....|+|+|+.
T Consensus 227 ~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~~spdg~~ 303 (388)
T 3pe7_A 227 NMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM--PACSHLMSNYDGSLMVGDGSD 303 (388)
T ss_dssp CCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE--CCEEEEEECTTSSEEEEEECC
T ss_pred ceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC--CCceeeeecCCCCeEccCCCc
Confidence 543 333333 35788999999998766542322 399999998754322111 111000 111368999988
Q ss_pred EEEE---------ccCCcEEEEEcCCCCeecccccccC-----------CeeEEEEcCCCcEEEEeeC
Q 014125 327 LGTG---------GQDGLVHIYDLQTGKWISGFQAAAD-----------TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 327 l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~ 374 (430)
|+.. ..+..|++||+.+++. ..+..+.. .+..++|+|+|+.|+.++.
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp C------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 7754 4466899999998765 44544554 5788999999998887763
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=2.8e-21 Score=170.57 Aligned_cols=250 Identities=13% Similarity=0.076 Sum_probs=175.1
Q ss_pred ceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.+.+++|+|+|+++ ++++.++.|.+||+.+++....+.... ...++..+..++| +|+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-------s~dg~~ 95 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------PEERVKSLFGAAL-------SPDGKT 95 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------TTEEEECTTCEEE-------CTTSSE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC------------cccccccccceEE-------CCCCCE
Confidence 47889999999765 566678999999998764322111100 0001124556667 789988
Q ss_pred EEEEe------------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 141 FASTT------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 141 l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
|++++ .++.|.+||+.+++....+.... .+.+++|+|++++++++ ++.|.+||+......
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~- 167 (337)
T 1pby_B 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGL-GRDLHVMDPEAGTLV- 167 (337)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEE-SSSEEEEETTTTEEE-
T ss_pred EEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC------CcceeEECCCCCEEEEe-CCeEEEEECCCCcEe-
Confidence 88886 57999999999988777665432 56789999999988866 789999999764211
Q ss_pred cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----------------------eEEEEEcCCceee-EEeecc
Q 014125 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----------------------TSAIYREDNMELL-YVLHGQ 264 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~v~~~d~~~~~~~-~~~~~~ 264 (430)
..+.. .....+ +.|+|++..+++++..++ .|.+||+.+++.. ..+..+
T Consensus 168 ---~~~~~--~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 168 ---EDKPI--QSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ---EEECS--TTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ---eeeec--cccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 11110 010112 267886554544444444 4689999988764 223345
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
...+.+++|+|++++++++ ++.|.+||+.+.+... .+. ....+.+++|+|+|++|++++.++.|++||+.++
T Consensus 240 ~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~-~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIK-RVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEE-EEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcc-eec----CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 5678899999999998877 5899999998874332 221 2245678999999999999999999999999999
Q ss_pred Ceeccccccc
Q 014125 345 KWISGFQAAA 354 (430)
Q Consensus 345 ~~~~~~~~~~ 354 (430)
+.+..+..+.
T Consensus 312 ~~~~~~~~~~ 321 (337)
T 1pby_B 312 EKKGQVDLPG 321 (337)
T ss_dssp CEEEEEECGG
T ss_pred cEEEEEEcCC
Confidence 9888776553
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=198.51 Aligned_cols=281 Identities=10% Similarity=0.031 Sum_probs=182.0
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCC---CeeeeeeeccccCccCCCCceE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG---ESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~l 141 (430)
+++|+|||++++++ .|+.|++||+.+++..... ..+. ..+.+++| ||||++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-----------------~~~~~~~~~~~~~~~-------SpDg~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-----------------SNRTMKSVNASNYGL-------SPDRQFV 74 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-----------------CHHHHHTTTCSEEEE-------CTTSSEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-----------------ccccccccceeeEEE-------CCCCCeE
Confidence 68999999766654 6999999999876432111 1111 13778888 8899999
Q ss_pred EEEeC---------CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 142 ASTTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 142 ~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++++. ++.|++||+.+++.+...... ..+..++|+|||+.|+.+.++.|++|++..+........
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence 98876 789999999998763111111 157789999999999987899999999976432110000
Q ss_pred cc-cCCCCCCCc---------ceEEEEEcCCCCceEEEecCCC----------------------------------eEE
Q 014125 213 TL-KGNKEGQAG---------IMSAIAFSPTHTGMLAIGSYSQ----------------------------------TSA 248 (430)
Q Consensus 213 ~~-~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~v~ 248 (430)
.. .....++.. ...+++|+| +++.|++++.|. .|+
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 00 000011111 125899999 555777766442 788
Q ss_pred EEEcCCceee---E-----EeeccccCeEEEEEccCCCEEEEEecC-C--CeEEEEe----CCCCceEEEEeec--ccCC
Q 014125 249 IYREDNMELL---Y-----VLHGQEGGVTHVQFSRDGNYLYTGGRK-D--PYILCWD----LRKAVQVVYKLYR--SSEH 311 (430)
Q Consensus 249 ~~d~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~l~~~~~~-d--~~i~i~d----~~~~~~~~~~~~~--~~~~ 311 (430)
+||+.+++.. . .+..|...+..++|+||++.+++.... + ..|.+|| +.++... .+.. ...+
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~ 305 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESR 305 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECS
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccC
Confidence 9999887642 1 123577789999999998766664311 2 2488899 6654221 1110 0234
Q ss_pred ccceE-----EEEEcCCCCEEEE--EccCC--cEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCC-----ce
Q 014125 312 TNQRI-----LFDIEPSGRHLGT--GGQDG--LVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGH-----RR 377 (430)
Q Consensus 312 ~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~ 377 (430)
...+. .+.|+|+|+.|+. +..+| .|++||+.+++ ...+..+...+..+.+. +++.|+..+.+ +.
T Consensus 306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence 44454 7899999986554 44555 57778887766 44555555667887777 77777666654 66
Q ss_pred eeec
Q 014125 378 FPVD 381 (430)
Q Consensus 378 ~~vw 381 (430)
.++|
T Consensus 384 ~~l~ 387 (719)
T 1z68_A 384 RNIY 387 (719)
T ss_dssp BEEE
T ss_pred EEEE
Confidence 7777
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=6.5e-22 Score=187.96 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=172.7
Q ss_pred CCeeeeeeeccccCccCCCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c---C
Q 014125 119 GESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y---N 193 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---d 193 (430)
..+|++++| +|||+.||+++. ||+++||++.+++.......+.. .+..++|+|+ ++++++ . +
T Consensus 21 ~~~~~~~~~-------~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~-----~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQG-------VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPIN-----SVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEE-------EETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCS-----EECEECTTCS-EEEEEEECSTTS
T ss_pred ccchheeec-------CCCCCeEEEEEccCCceeEEEEcCCCcEeeeccccc-----ccccccCCCC-eEEEEeccCCCC
Confidence 357999999 779999999887 99999999976665443322212 6789999999 666644 3 3
Q ss_pred CeEEEEEcCC--CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 194 KSVRVFDVHR--PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 194 ~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
....+|.++. .+... .+. .. ......+|+|++..++++...++.+.+||+.+++...... +.. .++
T Consensus 88 ~~~~l~~~~~~~~g~~~----~l~---~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~ 155 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQ----RLE---AV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGF 155 (582)
T ss_dssp CCEEEEEEETTSTTCCE----ECT---TS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEE
T ss_pred cceEEEEEeccCCCccc----ccc---CC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceE
Confidence 5566766654 32211 110 11 1234568888666666555555666699999887665554 323 889
Q ss_pred EEccCCCEEEEEecCC----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC--cEEEEEcCCCC
Q 014125 272 QFSRDGNYLYTGGRKD----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG--LVHIYDLQTGK 345 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~ 345 (430)
+|+|||++|++++ .+ +.|++||+.++... .+ ..+...+..++|+|||++|+++..++ .|++||+.+++
T Consensus 156 ~~spDG~~la~~~-~~~~~~~~i~~~d~~~g~~~--~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 156 VSDIRGDLIAGLG-FFGGGRVSLFTSNLSSGGLR--VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEETTEEEEEE-EEETTEEEEEEEETTTCCCE--EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred EECCCCCEEEEEE-EcCCCCeEEEEEcCCCCCce--Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 9999999999877 56 78999999877533 22 35667789999999999999888888 89999999998
Q ss_pred eecccccccCCeeEEE--------EcCCCcEEEEeeCCceeeecCC
Q 014125 346 WISGFQAAADTVNGFS--------FHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.. .+..|...+..++ |+|+|.++++++.++.+++|+.
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 87 7777777777777 9999999999999999999865
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.1e-21 Score=178.22 Aligned_cols=192 Identities=15% Similarity=0.095 Sum_probs=141.4
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCc-------ccccccccCCCCCCCcceEEEEEcCCCCceEE----EecC
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD-------FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA----IGSY 243 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~----~~~~ 243 (430)
.+..+++++++.+++++....+++|+....... .............+...|.+++|+|+ +++|+ +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEeccCC
Confidence 567899999999998664334999876421000 00000000011234567999999994 56777 7889
Q ss_pred CCeEEEEEcCCc--------ee---eEEeeccccCeEEEEEccC-CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 244 SQTSAIYREDNM--------EL---LYVLHGQEGGVTHVQFSRD-GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 244 dg~v~~~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
|+.|++||+++. +. ...+.+|...|.+++|+|+ +.+|++++ .||.|++||+++..... . ...|
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s-~Dg~v~iwD~~~~~~~~-~---~~~~ 191 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL-ADGSIAVLQVTETVKVC-A---TLPS 191 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE-TTSCEEEEEESSSEEEE-E---EECG
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE-CCCeEEEEEcCCCccee-e---ccCC
Confidence 999999998765 22 4456679999999999998 78899898 99999999999874332 2 1357
Q ss_pred ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-------cCCeeEEEEcCCCcEEEEee
Q 014125 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~ 373 (430)
...+.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|++++.++++.+
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 8899999999999999999999999999998 5555544433 23799999999988876543
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=3.5e-20 Score=165.31 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=166.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcE--EEEE------
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAG------ 191 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~------ 191 (430)
.+..++| +|++++|++++.+ .|.+|++. +++.......... . .+.+++|+|+|++ ++++
T Consensus 41 ~~~~~a~-------spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g---~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 41 PISWMTF-------DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-G---HPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCSEEEE-------CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-S---SGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCcEEEE-------CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-C---CCccEEECCCCCEEEEEEecCCcce
Confidence 5666777 8899999999888 89999997 7765443322110 1 2446889999995 3332
Q ss_pred --------cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcC-Cceee--E
Q 014125 192 --------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED-NMELL--Y 259 (430)
Q Consensus 192 --------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~-~~~~~--~ 259 (430)
.++.+.+|++...+.......... ..+...+.+++|+|++. +++++ ..++.|++|++. +++.. .
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 588999999975333211111110 12345689999999554 55554 457899999998 66543 2
Q ss_pred Eee--ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC--CCceEE--EEeeccc----CCcc------ceEEEE-EcC
Q 014125 260 VLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR--KAVQVV--YKLYRSS----EHTN------QRILFD-IEP 322 (430)
Q Consensus 260 ~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~--~~~~~~--~~~~~~~----~~~~------~v~~~~-~~~ 322 (430)
.+. .|...+..++|+|+|++|++++..++.|.+|++. ++.... ..+.... ++.. .+..++ |+|
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 333 2356789999999999999887457899999875 332211 1111111 1122 578899 999
Q ss_pred CCCEEEEEccCC------cEEEEEcC-CCCeecc---cccccCCeeEEEEcC---CCcEEEEeeCCceeeecCCCccccc
Q 014125 323 SGRHLGTGGQDG------LVHIYDLQ-TGKWISG---FQAAADTVNGFSFHP---FLPMAASSSGHRRFPVDDFEDLHLS 389 (430)
Q Consensus 323 ~~~~l~~~~~dg------~i~vwd~~-~~~~~~~---~~~~~~~v~~~~~~~---~~~~l~s~~~d~~~~vw~~~~l~~~ 389 (430)
+|++|++++.+. .|.+|++. +++.... ...+...+..++|+| +|++|++++.+
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------------- 330 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------------- 330 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS--------------
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC--------------
Confidence 999988776432 89999996 5665431 333445678899999 89999888642
Q ss_pred cCCCcEEEEeeccc
Q 014125 390 GDENCVSVWSFLYA 403 (430)
Q Consensus 390 ~~d~~i~~w~~~~~ 403 (430)
++.|++|++...
T Consensus 331 --~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 --EGWLEIYRWKDE 342 (365)
T ss_dssp --SCEEEEEEEETT
T ss_pred --CCeEEEEEEchh
Confidence 466777766554
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.3e-19 Score=161.58 Aligned_cols=257 Identities=14% Similarity=0.188 Sum_probs=161.9
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCC-CCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP-ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+...+..++|+|||++|++++.+ .|.+|++. +++... .......+....++| +|+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----------------~~~~~~~g~~~~~~~-------spd 93 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----------------EASHPIGGHPRANDA-------DTN 93 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE----------------EEEEECCSSGGGGCT-------TSC
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE----------------eeEeecCCCCccEEE-------CCC
Confidence 34468899999999999999888 99999986 442210 000000112333455 889
Q ss_pred Cce--EEEEe-------------CCCcEEEEecc-CCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEE
Q 014125 138 SCV--FASTT-------------RDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVF 199 (430)
Q Consensus 138 ~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~ 199 (430)
|+. ++++. .+|.+.+|++. +++....+..... .+...+.+++|+|+|++++++ .++.|++|
T Consensus 94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 984 45553 68999999997 4655443332100 112267899999999988854 46899999
Q ss_pred EcC-CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cceee---EEee-------cccc
Q 014125 200 DVH-RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMELL---YVLH-------GQEG 266 (430)
Q Consensus 200 d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~~~---~~~~-------~~~~ 266 (430)
++. .+. ........ ...+...+..++|+|++..++++...++.|.+|++. +++.. ..+. +|..
T Consensus 173 ~~~~~g~--~~~~~~~~--~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 173 RKLASGE--VELVGSVD--APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EECTTSC--EEEEEEEE--CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EECCCCC--EEEeeeEe--cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 997 321 11111111 011245589999999554444444457899999865 45432 1221 1121
Q ss_pred ------CeEEEE-EccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcC---CCCEEEEEc
Q 014125 267 ------GVTHVQ-FSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP---SGRHLGTGG 331 (430)
Q Consensus 267 ------~i~~~~-~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~ 331 (430)
.+..++ |+|+|++|+++...++ .|.+|++...............+...+..++|+| +|++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 478999 9999999988763333 8999999632222211100112333455688999 899999988
Q ss_pred cC-CcEEEEEcCCC
Q 014125 332 QD-GLVHIYDLQTG 344 (430)
Q Consensus 332 ~d-g~i~vwd~~~~ 344 (430)
.+ +.|.+|+++..
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 75 89999998765
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=182.62 Aligned_cols=287 Identities=13% Similarity=0.060 Sum_probs=184.7
Q ss_pred ceeEEEECcCCceEEEecC---------CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 62 FLKGIKWSPDGSSFLTSSE---------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.|.+++|||||++||+++. ++.|++||+.+++..... .+ ...+..++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~----------------~l--~~~~~~~~~----- 117 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN----------------EL--PRPIQYLCW----- 117 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS----------------CC--CSSBCCEEE-----
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce----------------ec--CcccccceE-----
Confidence 3899999999999999876 789999999876431000 00 135777888
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc----ccc---------cceEEEEECCCCcEEEE-EcC-C---
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV----DEI---------TAAFSVAFNPTGTKIFA-GYN-K--- 194 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~---------~~v~~~~~~~~~~~l~~-~~d-~--- 194 (430)
||||+.|+.+. ++.|++|++.+++........... ++. ....+++|+|||+.|+. +.| +
T Consensus 118 --SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 118 --SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp --CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred --CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 88999999886 789999999888765432211100 000 11248999999999984 433 1
Q ss_pred ------------------------------eEEEEEcCCCCCccccccccc--CCCCCCCcceEEEEEcCCCCceEEEec
Q 014125 195 ------------------------------SVRVFDVHRPGRDFEKYSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGS 242 (430)
Q Consensus 195 ------------------------------~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~ 242 (430)
.|++||+..+.... . ..+. ..+.++...+..++|+|+ +.++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~ 271 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG-P-QEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWL 271 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC-C-EECCCCHHHHTSCEEEEEEEESSS-SEEEEEEE
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc-e-eEccCCccCCCCcceEEEeEEeCC-CeEEEEEe
Confidence 78899987632100 0 0010 112356778999999996 66666643
Q ss_pred CC----CeEEEEE----cCCceeeEEe----eccccCeE-----EEEEccCCCEEEE-EecCCC--eEEEEeCCCCceEE
Q 014125 243 YS----QTSAIYR----EDNMELLYVL----HGQEGGVT-----HVQFSRDGNYLYT-GGRKDP--YILCWDLRKAVQVV 302 (430)
Q Consensus 243 ~d----g~v~~~d----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~-~~~~d~--~i~i~d~~~~~~~~ 302 (430)
.. ..|.+|| ..+++....+ ..|.+.+. .++|+|+|+.|+. .+..+| .|.+||+.++...
T Consensus 272 ~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~- 350 (719)
T 1z68_A 272 KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI- 350 (719)
T ss_dssp ESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-
T ss_pred ccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-
Confidence 32 3488899 8777765555 35666676 8899999996655 232455 5777787765421
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCC--CCe-eccc----ccccCCeeEEEEcCCCcEEE
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQT--GKW-ISGF----QAAADTVNGFSFHPFLPMAA 370 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~--~~~-~~~~----~~~~~~v~~~~~~~~~~~l~ 370 (430)
.+ ..+...+..+.++ +++.|+..+.+ +.+++|.+.. +.. ...+ .+|...+..+.|+|++++++
T Consensus 351 -~l---t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 351 -QI---TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp -EC---SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred -ec---ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 22 2334456676767 77776655554 7788888764 321 1222 23566788999999999777
Q ss_pred Ee-eCC--ceeeecCC
Q 014125 371 SS-SGH--RRFPVDDF 383 (430)
Q Consensus 371 s~-~~d--~~~~vw~~ 383 (430)
.. +.. ..+.+|+.
T Consensus 426 ~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 426 LVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEECCBSSCEEEEECS
T ss_pred EEcCCCCCCeEEEEEC
Confidence 54 332 34556653
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=9.2e-20 Score=177.75 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=171.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
...+++|+|||++|+++ ||+|++||+.+++....+..+.. .........++| ||||+.|
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-------Spdg~~l 76 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------DEFGHSINDYSI-------SPDGQFI 76 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT------------TTCCSCCCEEEE-------CTTSSEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh------------hhhcccccceEE-------CCCCCEE
Confidence 36689999999999986 89999999988753211111110 000011223556 8899999
Q ss_pred EEEeCC---------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccc
Q 014125 142 ASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 142 ~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+.++.+ +.+.+||+.+++... +..+. ..+...+|||||+.|+.+.++.|++|++..+........
T Consensus 77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~-----~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 77 LLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP-----NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC-----TTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSC
T ss_pred EEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC-----CcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCC
Confidence 998876 567799999987543 22222 268899999999999977889999999876432110000
Q ss_pred c-ccCCCCCCC---------cceEEEEEcCCCCceEEEecCC------------------------------------Ce
Q 014125 213 T-LKGNKEGQA---------GIMSAIAFSPTHTGMLAIGSYS------------------------------------QT 246 (430)
Q Consensus 213 ~-~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d------------------------------------g~ 246 (430)
. ......++. +....+.|+|| ++.|+.++.| .+
T Consensus 151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~ 229 (740)
T 4a5s_A 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229 (740)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred CCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence 0 000001111 12245899995 4556655321 15
Q ss_pred EEEEEcCC---ce--eeEEee------ccccCeEEEEEccCCCEEEEEecC---CCeEEEEeCCCCc----eEE-EEeec
Q 014125 247 SAIYREDN---ME--LLYVLH------GQEGGVTHVQFSRDGNYLYTGGRK---DPYILCWDLRKAV----QVV-YKLYR 307 (430)
Q Consensus 247 v~~~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~i~d~~~~~----~~~-~~~~~ 307 (430)
|++||+.+ ++ ....+. +|...+..++|+|||+.++..... +..|++||+.++. ... ..+.
T Consensus 230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~- 308 (740)
T 4a5s_A 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI- 308 (740)
T ss_dssp EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-
T ss_pred EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-
Confidence 88899988 63 222333 266779999999999976655412 2379999998875 110 0000
Q ss_pred ccCCccce-----EEEEEcCCCCEEE-EEcc-C--CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 308 SSEHTNQR-----ILFDIEPSGRHLG-TGGQ-D--GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 308 ~~~~~~~v-----~~~~~~~~~~~l~-~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
...+...+ ....|+|||+.|+ ..+. + ..|++||+.+++...... ....|..+.+ ++++.|+..+
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEE
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEE
Confidence 02233333 3678999999876 5553 3 358899998776554333 3445555542 3355444433
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=1.4e-19 Score=163.53 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=172.7
Q ss_pred CceeEEEECcCCceEEEecCC---CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
..+.+++|||||++|+.+... ..|.+||+.+++.. .+..........+.| +|+
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-----------------~l~~~~~~~~~~~~~-------spd 91 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-----------------QLTEGKGDNTFGGFI-------STD 91 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-----------------ECCCSSCBCTTTCEE-------CTT
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-----------------EeecCCCCccccceE-------CCC
Confidence 347889999999998877543 46888888765321 011111111223566 889
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeeccccccccc-ceE-------------EEEECCCCcEEEE------EcCCeEE
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT-AAF-------------SVAFNPTGTKIFA------GYNKSVR 197 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~v~-------------~~~~~~~~~~l~~------~~d~~i~ 197 (430)
|+.|+.++.++.|++||+.+++.......+......+ .+. .+.|+|+++.++. ..+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 9999999999999999999887665554332200000 000 0356788876652 3456899
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEEeecc-ccCeEE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYVLHGQ-EGGVTH 270 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~-~~~i~~ 270 (430)
+||+..+.. . .+ ..+...+..+.|+|+++..|+..+.+ ..|.+||+..++........ ...+..
T Consensus 172 ~~d~~~g~~--~---~~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 172 KVDIETGEL--E---VI----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp EEETTTCCE--E---EE----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred EEECCCCcE--E---ee----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 999876321 1 11 12345688999999333444443333 46888998765543333311 235788
Q ss_pred EEEccCCCEEEEEecCC----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEEc--------------
Q 014125 271 VQFSRDGNYLYTGGRKD----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTGG-------------- 331 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-------------- 331 (430)
++|+|+|+.|+.++..+ +.|++||+.++...... .... .. +.|+| +|+++++++
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--ECCS----EE-EEEECSSSSEEEEEECCC----------C
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--eCCC----CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 99999999887775222 45999999877533211 1111 22 88999 999888754
Q ss_pred --cCCcEEEEEcCCCCeecccccccC-----------CeeEEEEcCCCcEEEEeeC
Q 014125 332 --QDGLVHIYDLQTGKWISGFQAAAD-----------TVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 332 --~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~ 374 (430)
.++.|++||+.+++. ..+..+.. .+..++|+|+|+.|+.++.
T Consensus 316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp CCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 346799999988764 34444443 2567899999998887764
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.3e-18 Score=154.30 Aligned_cols=281 Identities=7% Similarity=-0.008 Sum_probs=186.0
Q ss_pred CCceEEEec------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 71 DGSSFLTSS------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 71 ~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
++++++... .|+.|.+||..+++....+ .. ...+ .++| +|++++++++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i----------------~~-g~~p--~i~~-------spdg~~lyv~ 67 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV----------------PT-AFNG--HVQV-------SNDGKKIYTM 67 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE----------------EC-CEEE--EEEE-------CTTSSEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe----------------cC-CCCC--ceEE-------CCCCCEEEEE
Confidence 455555442 4789999998876432111 11 1122 5666 8899999988
Q ss_pred eC----------CCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCcccc
Q 014125 145 TR----------DHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 145 ~~----------dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~~~~ 210 (430)
.. ++.|.+||+.+.+.+..+...... ........++++|+|++|+++ . ++.|.+||+.+...
T Consensus 68 ~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~---- 143 (361)
T 2oiz_A 68 TTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY---- 143 (361)
T ss_dssp EEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE----
T ss_pred EecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE----
Confidence 63 677999999998888877653211 111245689999999999855 2 58999999986411
Q ss_pred ccc-ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEE------eeccccCeEEEEEccCCCEEEE
Q 014125 211 YST-LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYV------LHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 211 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~------~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
... +. . .....+.+.|++...+++.+.||.+.+|+... ++.... +.....+ ..+.++|++..++.
T Consensus 144 ~~~~i~----~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 216 (361)
T 2oiz_A 144 VEDVTA----A--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHF 216 (361)
T ss_dssp EEEEGG----G--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEE
T ss_pred EEEEec----C--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEE
Confidence 111 11 0 11223567786667888899999999999865 444311 2222222 23445678888887
Q ss_pred EecCCCeEEEEeCCCCceEEEEeecccC--------CccceEEEEEcCCCCEEEEEcc-----------CCcEEEEEcCC
Q 014125 283 GGRKDPYILCWDLRKAVQVVYKLYRSSE--------HTNQRILFDIEPSGRHLGTGGQ-----------DGLVHIYDLQT 343 (430)
Q Consensus 283 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~ 343 (430)
.+ .++.|.++|+............... .......++|+|+++.++++.. .+.|.+||+.+
T Consensus 217 ~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 217 VS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp EB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred Ee-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 77 8899999999765432211111000 0111123689999888776643 34799999999
Q ss_pred CCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeeccc--cccccc
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYA--SMMENA 409 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~--~~~~~~ 409 (430)
++.+..+..+. +.+++|+|+|++|++++ . +.|++||...+ +.+..+
T Consensus 296 ~~~v~~i~~~~--p~~ia~spdg~~l~v~n-----------------~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 296 KQRVARIPGRD--ALSMTIDQQRNLMLTLD-----------------G-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TEEEEEEECTT--CCEEEEETTTTEEEEEC-----------------S-SCEEEEECSSSSCEEEEEE
T ss_pred CcEEEEEecCC--eeEEEECCCCCEEEEeC-----------------C-CeEEEEECCCCcceeeEEe
Confidence 99999998776 99999999999888775 2 77888888887 766664
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.8e-17 Score=145.35 Aligned_cols=242 Identities=10% Similarity=0.083 Sum_probs=169.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCC------------------------CcEEEEeccCCceeeeeecccccccccc
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRD------------------------HPIHLWDATTGLLRCTYRAYDAVDEITA 175 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 175 (430)
..+.++++ +++|+++++...+ +.|.+||..+++....+... ....
T Consensus 24 ~~v~~va~-------d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~ 92 (329)
T 3fvz_A 24 GQVSGVAL-------DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN----LFYL 92 (329)
T ss_dssp SCEEEEEE-------CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT----TCSS
T ss_pred CCceEEEE-------CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC----ccCC
Confidence 56888888 7789999888777 47999999988876654421 2226
Q ss_pred eEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccc--cCCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEE
Q 014125 176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL--KGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYR 251 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d 251 (430)
+..++++|+|.++++. .++.|++|+..........+... ......+......++++|+++.++++.+ .++.|++|+
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 7899999999977776 67899999975431111111110 0011233446899999996677778776 699999999
Q ss_pred cCCceeeEEeec----------cccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc
Q 014125 252 EDNMELLYVLHG----------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 321 (430)
Q Consensus 252 ~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 321 (430)
.+++.+..+.. +......++++|++..|+++...++.|++||..++... ..+ ....+...+..++++
T Consensus 173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~-~~~-~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV-REI-KHASFGRNVFAISYI 249 (329)
T ss_dssp -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CCTTTTTCEEEEEEE
T ss_pred -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE-EEE-eccccCCCcceeeec
Confidence 45666666542 22348899999995555555558999999999865433 222 223455678899999
Q ss_pred C------CCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEeeCC
Q 014125 322 P------SGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 322 ~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
| +|+..++...+..|++|++.+++.+..+. ++...+.+|+++|+|.++++...+
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 9 33333333345689999999999988873 566679999999999777777643
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=3.4e-18 Score=166.69 Aligned_cols=242 Identities=12% Similarity=0.083 Sum_probs=162.7
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC------
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------ 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------ 193 (430)
....++| +|++.+++++ ||.|++||+.+++....+..+...........+.|||||++|+.+ .+
T Consensus 18 ~~~~~~w-------~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 18 KLYSLRW-------ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCEEE-------CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cccccEE-------CCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 4567888 7789888886 999999999999887776665432222223458999999999855 33
Q ss_pred ---CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-eccccCe-
Q 014125 194 ---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGV- 268 (430)
Q Consensus 194 ---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i- 268 (430)
+.+.+||+.++. .. .+..+...+...+|+|++ +.||.+ .++.|++|++.+++..+.. .++...+
T Consensus 89 ~~~~~~~~~d~~~~~--------~~-~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQ--------LI-TEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp CEEEEEEEEETTTTE--------EC-CSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred ccceEEEEEECCCCc--------EE-EcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcCCCCcccee
Confidence 677899998742 11 124455679999999954 566666 4789999999887654322 2222222
Q ss_pred ----------------EEEEEccCCCEEEEEecCCC-----------------------------------eEEEEeCCC
Q 014125 269 ----------------THVQFSRDGNYLYTGGRKDP-----------------------------------YILCWDLRK 297 (430)
Q Consensus 269 ----------------~~~~~~~~~~~l~~~~~~d~-----------------------------------~i~i~d~~~ 297 (430)
..+.|||||+.|+.....++ .|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 35899999999988752222 578888877
Q ss_pred ---Cce-EEEEeecc---cCCccceEEEEEcCCCCEEEEEcc----CCcEEEEEcCCCC----ee--ccc--ccccCCee
Q 014125 298 ---AVQ-VVYKLYRS---SEHTNQRILFDIEPSGRHLGTGGQ----DGLVHIYDLQTGK----WI--SGF--QAAADTVN 358 (430)
Q Consensus 298 ---~~~-~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~----~~--~~~--~~~~~~v~ 358 (430)
+.. ....+... .++...+..++|+|||+.++.... +..|++||+.+++ +. ..+ ..|...|.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence 521 11122110 136677899999999997665533 3469999999987 32 222 34555554
Q ss_pred -----EEEEcCCCcEEE-EeeC-Cc--eeeecC
Q 014125 359 -----GFSFHPFLPMAA-SSSG-HR--RFPVDD 382 (430)
Q Consensus 359 -----~~~~~~~~~~l~-s~~~-d~--~~~vw~ 382 (430)
.++|+|||+.|+ ..+. +| .|.+|+
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 789999999776 5553 44 455554
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=5.6e-18 Score=163.54 Aligned_cols=289 Identities=11% Similarity=0.101 Sum_probs=182.6
Q ss_pred ecccCCCceeEEEECcCCceEEEe--cCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeee---------
Q 014125 55 TSSIPNNFLKGIKWSPDGSSFLTS--SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY--------- 123 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------- 123 (430)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..+...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-----------------~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-----------------LPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-----------------SCTTCCBCCCGGGTCCC
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-----------------CCCCccccccccccCCc
Confidence 567899999999999987777777 66889999986433211111 11112222
Q ss_pred eeeeccccCccCCCCce-EEEEeC-CCcEEEEecc--C-CceeeeeecccccccccceEEEEECCCCcEEEE-EcC----
Q 014125 124 DFCWFPHMSASDPTSCV-FASTTR-DHPIHLWDAT--T-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN---- 193 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~-l~~~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d---- 193 (430)
...|.. ||||+. |+.++. +..|.++++. . +. ...+.......+...+..++|+|||+.|+. +.+
T Consensus 81 ~~~~~~-----SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVP-----RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE 154 (662)
T ss_dssp CEEEEC-----CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS
T ss_pred cceeee-----ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC
Confidence 334421 488988 776554 5667777765 2 43 333333110012236789999999999884 444
Q ss_pred ------CeEEEEEcCCCC----CcccccccccCCCC-CCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcC-
Q 014125 194 ------KSVRVFDVHRPG----RDFEKYSTLKGNKE-GQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYRED- 253 (430)
Q Consensus 194 ------~~i~v~d~~~~~----~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~- 253 (430)
..|++||+.... ... ..+ . .+...+..++|+|+ ++.|+.++.+ ..|++||+.
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~---~~l----~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAV---REL----SDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGS---EES----SCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred CCCCceeEEEEEECCCCccccCCce---eEE----EecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 579999987621 111 111 2 33356778899995 5566655543 479999998
Q ss_pred Cc---eeeEEeeccccCeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccc--------eEEEEE
Q 014125 254 NM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQ--------RILFDI 320 (430)
Q Consensus 254 ~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~--------v~~~~~ 320 (430)
++ +.......+...+..++|+|||++++++. .++ .|.+||+.++... .+.. .+... +..++|
T Consensus 227 ~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~--~l~~--~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 227 DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT--QLCR--REEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE--ESSC--CSSBSSCCCCSTTCCSEEE
T ss_pred CCcccccEEeCCCCCceEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee--eccc--ccccccCccccccCceEeE
Confidence 56 44444444568899999999999666666 778 6777776555322 2211 11111 456899
Q ss_pred cCCCCEEEEEccCCcEEEE--EcCCCCeecccccccCCeeEE-EEcCCCcEEEEeeCCceeeec
Q 014125 321 EPSGRHLGTGGQDGLVHIY--DLQTGKWISGFQAAADTVNGF-SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~d~~~~vw 381 (430)
+|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+....+|
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 999999999998 999999 555554 66777777777777 555444455555655544444
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=1.1e-17 Score=147.28 Aligned_cols=273 Identities=11% Similarity=0.050 Sum_probs=184.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++.|+|++..++..+.++.++.|.-. . ......+...+.+++| ++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~-------~~~g~l 58 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE---P-----------------WLEISKKGLQLEGLNF-------DRQGQL 58 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE---E-----------------EEEEESSCCCEEEEEE-------CTTSCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc---e-----------------eEEEeccCccccCcEE-------CCCCCE
Confidence 347888999998888877888888888221 0 0111223345677888 678888
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-C----CeEEEEEcCCCCCccccccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-N----KSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++++..++.|.+||..+++......... ..+.+++++|++++++++. + +.|.+||....... .. ..
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~--~~--~~ 129 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHK-----ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ--DI--IE 129 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSS-----SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE--EE--EC
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCC-----CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE--EE--Ec
Confidence 8888889999999998887655442222 2788999999999888764 4 58999998753221 00 10
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
. ......+..++++| ++.++++... .+.|..+|..+++... +......+..++|+|+++.|+++...++.
T Consensus 130 ~--~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 130 D--LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp S--SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred c--CccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCe
Confidence 0 12335689999999 4556665543 3567777766554433 22334567899999999977766546889
Q ss_pred EEEEeCCCC-ceEE----EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC------Cee
Q 014125 290 ILCWDLRKA-VQVV----YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD------TVN 358 (430)
Q Consensus 290 i~i~d~~~~-~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~ 358 (430)
|.+||+.+. .... ........+ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.
T Consensus 206 i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~ 283 (333)
T 2dg1_A 206 LHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRST 283 (333)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCC
T ss_pred EEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcc
Confidence 999999642 2111 011111112 46778999999998888777889999998 4666666554432 689
Q ss_pred EEEEcCCCcEEEEeeCC
Q 014125 359 GFSFHPFLPMAASSSGH 375 (430)
Q Consensus 359 ~~~~~~~~~~l~s~~~d 375 (430)
+++|+|++..|+.++.+
T Consensus 284 ~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 284 HPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTSCEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCc
Confidence 99999998777655544
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=5.5e-17 Score=139.52 Aligned_cols=238 Identities=10% Similarity=0.145 Sum_probs=164.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc-ccccccceEEEEE-CCCCcEEEEEc--CCe
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAF-NPTGTKIFAGY--NKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~l~~~~--d~~ 195 (430)
....++++ ++++.++++...++.|.+||.. ++....+.... ...+...+..+++ .+++.++++.. ++.
T Consensus 30 ~~p~~v~~-------~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 30 TEPSGVAV-------NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp SCEEEEEE-------CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCCceEEE-------CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 35666777 7788888888889999999987 55555554321 1112236789999 57787777763 899
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--ccccCeEEEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQF 273 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~ 273 (430)
|.+||... .... .+. ..+...+..++++| +++++++...++.|.+||.. ++.+..+. .+...+..+++
T Consensus 102 i~~~d~~g--~~~~---~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 102 IQIYNQYG--QFVR---KFG---ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp EEEECTTS--CEEE---EEC---TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred EEEECCCC--cEEE---Eec---CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence 99999432 1111 111 12334688999999 55688887888999999964 55555553 34456899999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-cEEEEEcCCCCeeccccc
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-LVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~ 352 (430)
+|+|+.+++.. .++.|++||.... . ...+ ...++...+..++++|+|+++++...++ .|.+||. +++.+..+..
T Consensus 172 ~~~g~l~v~~~-~~~~i~~~~~~g~-~-~~~~-~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~ 246 (286)
T 1q7f_A 172 NDKQEIFISDN-RAHCVKVFNYEGQ-Y-LRQI-GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES 246 (286)
T ss_dssp CSSSEEEEEEG-GGTEEEEEETTCC-E-EEEE-SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred CCCCCEEEEEC-CCCEEEEEcCCCC-E-EEEE-ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc
Confidence 99998666555 7899999998543 2 2222 1122335788999999999888888776 9999995 4677776665
Q ss_pred ccC--CeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 353 AAD--TVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 353 ~~~--~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+.. .+.+++++|+|+++++ +.++.|++|
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIY 276 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred cCCCCcceeEEECCCCcEEEE-CCCCeEEEE
Confidence 443 4779999999987777 444444444
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=2.9e-17 Score=145.64 Aligned_cols=275 Identities=15% Similarity=0.094 Sum_probs=176.1
Q ss_pred cccCCCceeEEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeee
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 125 (430)
+..+..+ .++|+|||++|+++. .++.|.+||..+.+....+.... ....++.....+
T Consensus 47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~-----------~~~~~g~~p~~i 113 (361)
T 2oiz_A 47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP-----------KRVQGLNYDGLF 113 (361)
T ss_dssp EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT-----------TBCCBCCCGGGE
T ss_pred ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc-----------cccccCCCcceE
Confidence 3344444 899999999999886 36789999998664432221110 000012234445
Q ss_pred eeccccCccCCCCceEEEEeC--CCcEEEEeccCCceeee-eecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEE
Q 014125 126 CWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFD 200 (430)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~~d~~i~v~d 200 (430)
++ +|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..++ .+.||.+.+|+
T Consensus 114 ~~-------spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 114 RQ-------TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp EE-------CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred EE-------CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 55 889999998874 57899999999987766 4432 12235567766 3333 56889999998
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee--eEEeec------c----ccCe
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLHG------Q----EGGV 268 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~------~----~~~i 268 (430)
+...+....... ..........++ .+.++|++ ..++..+.++.|.++|+..... ...+.. + ....
T Consensus 180 ~~~~g~~~~~~~-~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 180 LGEDGKVASQSR-SKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp ECTTSSEEEEEE-CCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred ECCCCcEeeecc-ccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence 865332211100 000111111111 23335533 4555566789999999875432 122110 0 1112
Q ss_pred EEEEEccCCCEEEEEec----------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEE
Q 014125 269 THVQFSRDGNYLYTGGR----------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHI 338 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 338 (430)
..++|+|+++.++++.. ..+.|.+||+.+.+.. ..+ ..+. +..++|+|+|++|++++. +.|.+
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-~~i---~~~~--p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-ARI---PGRD--ALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-EEE---ECTT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-EEE---ecCC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence 23789999998888762 0348999999987433 333 2233 889999999999998887 99999
Q ss_pred EEcCCC--CeecccccccCCeeEEEEcCCCc
Q 014125 339 YDLQTG--KWISGFQAAADTVNGFSFHPFLP 367 (430)
Q Consensus 339 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 367 (430)
||+.++ +.+..+..+......++++|+|.
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 88888766777889999999875
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=4.1e-17 Score=143.11 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=174.2
Q ss_pred CceeEEEECcCCceEEEecCC------------------------CeEEEEeCCCCCCcccccccccccccCcccceeee
Q 014125 61 NFLKGIKWSPDGSSFLTSSED------------------------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV 116 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (430)
+.+.+|+++|+|+++++.+.+ +.|.+||..+++..... ..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------~~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------GK 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE----------------CT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc----------------CC
Confidence 458999999999999988877 46888887765432110 00
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccc----cccccceEEEEECC-CCcEEEE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDA----VDEITAAFSVAFNP-TGTKIFA 190 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~ 190 (430)
.+-.....+++ +++|+++++...++.|++|+..... .+..+..... ..+...+..++++| ++.++++
T Consensus 88 ~~~~~p~gia~-------d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~ 160 (329)
T 3fvz_A 88 NLFYLPHGLSI-------DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160 (329)
T ss_dssp TTCSSEEEEEE-------CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred CccCCceEEEE-------CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence 11234566666 7789988888889999999986542 3444422110 12233678999999 7888877
Q ss_pred E--cCCeEEEEEcCCCCCcccccccccC---CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee--c
Q 014125 191 G--YNKSVRVFDVHRPGRDFEKYSTLKG---NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--G 263 (430)
Q Consensus 191 ~--~d~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~ 263 (430)
. .++.|++|+... .....+..... ...++......++++|+++.++++...++.|++||..+++.+..+. .
T Consensus 161 d~~~~~~I~~~~~~g--~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 161 DGYCNSRIVQFSPSG--KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp ECSSCCEEEEECTTS--CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred eCCCCCeEEEEcCCC--CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 6 488999999432 21111110000 0012234588999999658888888899999999999888877774 3
Q ss_pred cccCeEEEEEccCCCEEEEEe------cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 264 QEGGVTHVQFSRDGNYLYTGG------RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 264 ~~~~i~~~~~~~~~~~l~~~~------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
+...+.+++|+| +..+.+.+ ..+..|++||..++... ..+.....+...+..++++|+|.++++...+++|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 556788999999 33322222 13458999999887533 23322235667789999999998888888899999
Q ss_pred EEEcCC
Q 014125 338 IYDLQT 343 (430)
Q Consensus 338 vwd~~~ 343 (430)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999864
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.5e-16 Score=136.87 Aligned_cols=254 Identities=10% Similarity=0.119 Sum_probs=169.5
Q ss_pred cccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+|-..+.+++++|+|+++++.+.++.|.+||... +....+.... ....+...+..+++. .
T Consensus 25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~-----------~~~~~~~~p~~i~~~------~ 86 (286)
T 1q7f_A 25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG-----------KRDSQLLYPNRVAVV------R 86 (286)
T ss_dssp STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS-----------SSTTCBSSEEEEEEE------T
T ss_pred CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccC-----------CCcccccCceEEEEE------c
Confidence 345667799999999999888888899999999763 2211110000 000111345666662 2
Q ss_pred CCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccc
Q 014125 136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 136 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 213 (430)
+++.++++... ++.|.+|| .+++.+..+.... ...+.+++++|+++++++. .++.|.+||... .... .
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~---~ 156 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI----LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLH---K 156 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT----CSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEE---E
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc----CCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--CEEE---E
Confidence 45666666643 78999999 5666665553321 1267899999999877776 678999999643 1111 1
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc--ccCeEEEEEccCCCEEEEEecCCC-eE
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVQFSRDGNYLYTGGRKDP-YI 290 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~-~i 290 (430)
+. ...+...+..++++| +++++++...++.|++||.. ++.+..+..+ ...+..++++++|+++++.. .++ .|
T Consensus 157 ~~--~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i 231 (286)
T 1q7f_A 157 FG--CSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNL 231 (286)
T ss_dssp EE--CTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEE
T ss_pred eC--CCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEE
Confidence 11 012334589999999 56688888889999999974 5555555433 35789999999998777766 665 99
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
.+||.... .. ..+.. ......+..++++|+|+++++ +.|+.|++|++....+
T Consensus 232 ~~~~~~g~-~~-~~~~~-~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 232 TIFTQDGQ-LI-SALES-KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEECTTSC-EE-EEEEE-SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEECCCCC-EE-EEEcc-cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 99996543 22 22221 223345778999999987776 5789999999876544
No 174
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=8.9e-18 Score=148.82 Aligned_cols=255 Identities=12% Similarity=0.103 Sum_probs=155.4
Q ss_pred ceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecC-----CCeeeeeeeccccCccC
Q 014125 62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-----GESVYDFCWFPHMSASD 135 (430)
Q Consensus 62 ~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~ 135 (430)
.+..++|+|+|+++ +++..++.|.+||+.+++...... ..+ +..+..++| +
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------s 100 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN----------------LSSVPGEVGRSMYSFAI-------S 100 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------SCCSTTEEEECSSCEEE-------C
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE----------------cccccccccccccceEE-------C
Confidence 57899999999865 455678999999998764321111 111 123566667 8
Q ss_pred CCCceEEEEeCC------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 136 PTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 136 ~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
|++++|++++.+ +.|.+||+.+++......... ....+.+++|+|+++ ++++ ++.|.+||+.+
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~ 175 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP---MPRQVYLMRAADDGS-LYVA-GPDIYKMDVKT 175 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE---CCSSCCCEEECTTSC-EEEE-SSSEEEECTTT
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc---CCCcccceeECCCCc-EEEc-cCcEEEEeCCC
Confidence 899999998865 899999998865433222111 112577899999999 5543 34599999876
Q ss_pred CCCcccccccccCCCC-------------CCC----cceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEeeccc
Q 014125 204 PGRDFEKYSTLKGNKE-------------GQA----GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQE 265 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~-------------~~~----~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~ 265 (430)
..... .......... ... .....+++++++............+..++..+++. ...+..+.
T Consensus 176 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 176 GKYTV-ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp CCEEE-EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred Cceec-cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 43211 1100000000 000 02344566653211100000011122244444332 11122345
Q ss_pred cCeEEEEEcc-CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 266 GGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 266 ~~i~~~~~~~-~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
..+..++|+| ++++++++ ++.|.+||+.+..... .+. ....+..++|+|+|++|++++.++.|++||+.++
T Consensus 255 ~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~-~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIK-AAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEE-EEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEE-EEc----CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 6788999999 99998887 7899999999874332 221 2234678999999999888888999999999999
Q ss_pred Ceecccccc
Q 014125 345 KWISGFQAA 353 (430)
Q Consensus 345 ~~~~~~~~~ 353 (430)
+.+..+..+
T Consensus 327 ~~~~~~~~~ 335 (349)
T 1jmx_B 327 EKVKNIKLP 335 (349)
T ss_dssp EEEEEEECS
T ss_pred ceeeeeecC
Confidence 888777644
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.79 E-value=5.7e-15 Score=127.68 Aligned_cols=272 Identities=10% Similarity=0.064 Sum_probs=184.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
..+...+.+++++++|+++++...++.|.+||.. +... ... .......+.++++ ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~---------------~~~~~~~~~~i~~-------~~ 66 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP---------------LPTPDAKVMCLTI-------SS 66 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE---------------CSSTTCCEEEEEE-------CT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec---------------CCcccCceeeEEE-------CC
Confidence 3455679999999999988877778899999987 4221 000 0012245777777 67
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++.++++...++.|..|+.. ++. ..+.... ....+.++++++++.++++. .++.|..||. .+ . .....
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~-~~~~~--- 135 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GII-KEYTLPN---PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-K-IREYE--- 135 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCE-EEEECSS---TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C-EEEEE---
T ss_pred CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---cCCCceeeEECCCCCEEEEecCCceEEEECC-CC-C-EEEec---
Confidence 88888887778889999986 332 2232211 12267899999999888876 5789999987 32 1 11110
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEe
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d 294 (430)
.......+..+++++ ++.++++...++.|..||. +++.... .......+.+++++++|...++.. .++.|..||
T Consensus 136 --~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~ 210 (299)
T 2z2n_A 136 --LPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRIT 210 (299)
T ss_dssp --CSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEEC
T ss_pred --CCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEEC
Confidence 112234688999999 5567777777889999998 6654432 333345688999999998665554 688999999
Q ss_pred CCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCCeeEEEEcCCCcEEEEee
Q 014125 295 LRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
. ++.... . ........+..++++++|++.++...++.|.+||. +++.... +..+...+.++++ +++.+.++..
T Consensus 211 ~-~g~~~~--~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 211 T-SGEITE--F-KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp T-TCCEEE--E-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred C-CCcEEE--E-ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence 9 543222 1 11234567889999999997777667889999998 4543221 2344567899999 8888777764
Q ss_pred C
Q 014125 374 G 374 (430)
Q Consensus 374 ~ 374 (430)
.
T Consensus 285 ~ 285 (299)
T 2z2n_A 285 C 285 (299)
T ss_dssp T
T ss_pred C
Confidence 3
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=2.8e-15 Score=139.65 Aligned_cols=283 Identities=13% Similarity=0.042 Sum_probs=192.3
Q ss_pred cCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCc
Q 014125 70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP 149 (430)
Q Consensus 70 p~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (430)
|.+.++++...++.|.++|..+++.... +..+..+..+.+ +||++++++++.|+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~------------------i~~g~~p~~v~~-------SpDGr~lyv~~~dg~ 219 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTV------------------LDTGYAVHISRL-------SASGRYLFVIGRDGK 219 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEE------------------EECSSCEEEEEE-------CTTSCEEEEEETTSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEE------------------EeCCCCccceEE-------CCCCCEEEEEcCCCe
Confidence 5556777888899999999987754322 122234556666 889999999999999
Q ss_pred EEEEecc--CCceeeeeecccccccccceEEEEEC----CCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCC--
Q 014125 150 IHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFN----PTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKE-- 219 (430)
Q Consensus 150 i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~-- 219 (430)
|.+||+. +++.+..+.... ....++|+ |+|++++++ .++.|.++|..+... ...+........
T Consensus 220 V~viD~~~~t~~~v~~i~~G~------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 220 VNMIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQ 292 (567)
T ss_dssp EEEEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTC
T ss_pred EEEEECCCCCCcEeEEEecCC------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccc
Confidence 9999995 777777666533 45689999 699988854 679999999766321 111111000000
Q ss_pred -CC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 220 -GQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 220 -~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
.| ...+..+..++++..+++....+|.|.++|..+.+.. ..+. .......+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 11 1257888889877777777788899999998765432 2222 23456788999999999988867899999999
Q ss_pred CCCceEEEEee-cccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCC-------CCeecccccccCCeeEEEEcCC
Q 014125 296 RKAVQVVYKLY-RSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQT-------GKWISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~ 365 (430)
.+.+....... ....|.+.-..+ ++|++. ..+++. .++.|.++|..+ .+.++.+......-..+..+|+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~ 450 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN 450 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred CCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC
Confidence 98753322221 122343222223 588754 444543 468999999988 6677777655444455788999
Q ss_pred CcEEEEeeC-------CceeeecCCCcc
Q 014125 366 LPMAASSSG-------HRRFPVDDFEDL 386 (430)
Q Consensus 366 ~~~l~s~~~-------d~~~~vw~~~~l 386 (430)
+++|..... ...|.|+|...+
T Consensus 451 ~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 451 SQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCeEEEecCCCCCcccCceEEEEECCcc
Confidence 998887653 347777766554
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=5.2e-16 Score=137.40 Aligned_cols=246 Identities=16% Similarity=0.124 Sum_probs=160.5
Q ss_pred ceeEEEECcCCceEEEec---------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 62 FLKGIKWSPDGSSFLTSS---------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+..+++ ||++++... .++.|.+|++.+++. ..+ ..+..++|
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------------~~l---~~~~~~~~----- 66 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-------------------RFI---ENATMPRI----- 66 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-------------------EEE---ESCEEEEE-----
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-------------------EEc---ccCCCeEE-----
Confidence 3667777 888887642 256799999876531 011 35667788
Q ss_pred ccCCCCceEEEEeCC---C--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC-------------
Q 014125 133 ASDPTSCVFASTTRD---H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN------------- 193 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d------------- 193 (430)
+|||+.|+.++.+ + .|.+|++.+++........ .+..+.|+|+++.|+. +.+
T Consensus 67 --SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 67 --SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-------NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp --CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-------EEEEEEECTTSSEEEEEEECCCC---------C
T ss_pred --CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-------CccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 8899999887654 2 4888888887665443321 1778999999998884 322
Q ss_pred --------------CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-------eEEEEEc
Q 014125 194 --------------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-------TSAIYRE 252 (430)
Q Consensus 194 --------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~v~~~d~ 252 (430)
..|.+||+..+.. .. .+ .. . .+..+.|+|++ +++++..++ ...+|.+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~---~l----~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEV-IE---EF----EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEE-EE---EE----EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeE-Ee---ee----cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence 5688889865321 01 11 11 1 46788999955 777665432 3344443
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCC--------CeEEEEeCCCCceEEEEeecccCCccceEE-EEEcCC
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD--------PYILCWDLRKAVQVVYKLYRSSEHTNQRIL-FDIEPS 323 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~ 323 (430)
.+++.. .+..+ ..+..+ +|+|+.|+.++ .+ ..|.+|| ++. .. .+. ..+...+.. +.|+ +
T Consensus 206 d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~-~~~~~~~~~~~~l~~~d--~~~-~~-~l~--~~~~~~~~~~~~~s-d 273 (347)
T 2gop_A 206 EDGKEE-KMFEK-VSFYAV--DSDGERILLYG-KPEKKYMSEHNKLYIYD--GKE-VM-GIL--DEVDRGVGQAKIKD-G 273 (347)
T ss_dssp ETTEEE-EEEEE-ESEEEE--EECSSCEEEEE-CCSSSCCCSSCEEEEEC--SSC-EE-ESS--TTCCSEEEEEEEET-T
T ss_pred CCCceE-EeccC-cceeeE--CCCCCEEEEEE-ccccCCccccceEEEEC--CCc-eE-ecc--ccCCcccCCccEEc-C
Confidence 345443 33334 555544 99999888777 33 4688888 332 21 221 344566775 8999 8
Q ss_pred CCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 324 GRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 324 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
+ ++++++.++.++|| +.+++... +..+...|.+++|+| .++++++.
T Consensus 274 g-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~ 319 (347)
T 2gop_A 274 K-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKET 319 (347)
T ss_dssp E-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEEC
T ss_pred c-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcC
Confidence 8 99999999999999 88666543 334567899999999 66666654
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=7.7e-17 Score=155.57 Aligned_cols=258 Identities=10% Similarity=0.015 Sum_probs=158.7
Q ss_pred eecccCCCcee---------EEEEC--cCCce-EEEecC-CCeEEEEeCC--C-CCCcccccccccccccCcccceeeec
Q 014125 54 RTSSIPNNFLK---------GIKWS--PDGSS-FLTSSE-DKTLRIFSLP--E-NGISYDVNACSLAKDQDSYEASLVVT 117 (430)
Q Consensus 54 ~~~~~h~~~v~---------~~~~s--p~~~~-l~s~~~-dg~v~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (430)
+.+..|...+. ...|+ |||+. |+.++. +..|.+|++. + +.. ..+... ....
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~------------~~~~ 127 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPV------------SAVG 127 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCC------------CCST
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCC------------ccCC
Confidence 34556665665 66665 99998 776654 5667777665 2 211 000000 0000
Q ss_pred CCCeeeeeeeccccCccCCCCceEEEEeCC----------CcEEEEeccC------CceeeeeecccccccccceEEEEE
Q 014125 118 EGESVYDFCWFPHMSASDPTSCVFASTTRD----------HPIHLWDATT------GLLRCTYRAYDAVDEITAAFSVAF 181 (430)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~~~~~~~~~~~v~~~~~ 181 (430)
+...+..++| +|||+.|++++.+ ..|++||+.+ ++......... ..+..++|
T Consensus 128 ~~~~~~~~~~-------spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~ 195 (662)
T 3azo_A 128 GGLRWADPVL-------LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH-----RFVTGPRL 195 (662)
T ss_dssp TCEEEEEEEE-------ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS-----SEECCCEE
T ss_pred CCccccCcEE-------CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC-----CcccCceE
Confidence 3457788899 7799999998877 5899999988 55432220222 26678899
Q ss_pred CCCCcEEE-EEcC--------CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEE
Q 014125 182 NPTGTKIF-AGYN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIY 250 (430)
Q Consensus 182 ~~~~~~l~-~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~ 250 (430)
+|||++|+ ++.+ ..|++||+...+.. . .......++...+..+.|+|++. +++++..++ .|.+|
T Consensus 196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~---~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-A---DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRV 270 (662)
T ss_dssp CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-E---EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-c---ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEE
Confidence 99999998 4544 37999999732210 0 01111123356789999999665 888888888 67777
Q ss_pred EcCCceeeEEeeccccC--------eEEEEEccCCCEEEEEecCCCeEEEE--eCCCCceEEEEeecccCCccceEEE-E
Q 014125 251 REDNMELLYVLHGQEGG--------VTHVQFSRDGNYLYTGGRKDPYILCW--DLRKAVQVVYKLYRSSEHTNQRILF-D 319 (430)
Q Consensus 251 d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~-~ 319 (430)
|+.+++.......+... +..++|+|++++++++. . +.+++| |+.++. ...+ ..+...+..+ +
T Consensus 271 ~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~--~~~l---~~~~~~~~~~~s 343 (662)
T 3azo_A 271 DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGE--LVDA---AGPWTEWAATLT 343 (662)
T ss_dssp CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTE--EEEC---CSSCCEEEEEEE
T ss_pred ECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCc--EEEe---cCCCCeEEEEEe
Confidence 77666654443333222 56789999999888888 7 999999 554442 2232 3445566666 4
Q ss_pred EcCCCCEEEEEccCC--cEEEEEcCCCCeec
Q 014125 320 IEPSGRHLGTGGQDG--LVHIYDLQTGKWIS 348 (430)
Q Consensus 320 ~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~ 348 (430)
++++.-++++++.+. .|+++|+.+++...
T Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 344 VSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred cCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 443333344444443 46667777776543
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=9.2e-16 Score=148.94 Aligned_cols=243 Identities=11% Similarity=0.006 Sum_probs=162.3
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCC-----cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK 194 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~ 194 (430)
.+..++| ||||++|+.+..++ .|++||+.+++......... .+..++|+|||+.|+ ++.++
T Consensus 126 ~~~~~~~-------SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~------~~~~~~wspDg~~l~~~~~~~ 192 (710)
T 2xdw_A 126 ALRGYAF-------SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV------KFSCMAWTHDGKGMFYNAYPQ 192 (710)
T ss_dssp EEEEEEE-------CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE------CSCCEEECTTSSEEEEEECCC
T ss_pred EEEEEEE-------CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc------ccceEEEEeCCCEEEEEEECC
Confidence 5777888 88999998776543 89999999998765322111 356799999999888 44554
Q ss_pred e----------------EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----CCeEEEEEcC
Q 014125 195 S----------------VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQTSAIYRED 253 (430)
Q Consensus 195 ~----------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~~~d~~ 253 (430)
. |++|++.++..... +......+...+..+.|+|++. .|+.++. +..|++||+.
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----LCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCE----EEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGG
T ss_pred ccccccccccccCCCCEEEEEECCCCcccce----EEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECc
Confidence 4 99999976421111 1111123445678999999555 5554443 5689999998
Q ss_pred C------ce-eeEEeeccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCce-EEEEeecccCCccceEEEEEcC
Q 014125 254 N------ME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQ-VVYKLYRSSEHTNQRILFDIEP 322 (430)
Q Consensus 254 ~------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 322 (430)
+ +. ....+..+...+.. .|+|+|+.|+..+..+ +.|.+||+.++.. ....+.. ......+..++|++
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACVR 345 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCEEEEEEEET
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCCCeEEEEEEEc
Confidence 6 43 35555556655554 5889999888776333 3699999987631 1112211 11123677899998
Q ss_pred CCCEEEEEccCCc--EEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEe-eC---CceeeecCC
Q 014125 323 SGRHLGTGGQDGL--VHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASS-SG---HRRFPVDDF 383 (430)
Q Consensus 323 ~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~---d~~~~vw~~ 383 (430)
++.++++...|+. |++|++.+++.+..+..+.+.+..+.++|++..++.. ++ .+.+.+||.
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 8888888888884 6677877788777787777789999999998755533 22 245555543
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=1.7e-15 Score=128.71 Aligned_cols=252 Identities=13% Similarity=0.041 Sum_probs=178.2
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
.+++|++++.++.|.+||.++|+.+..+..+.. ..+.++.++|+|++++ +.++.|..||. ++...+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~----~~- 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----WECNSVAATKAGEILF-SYSKGAKMITR-DGRELWN----IA- 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----CCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEE----EE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----CCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEE----Ec-
Confidence 467899999999999999999999998886541 1567899999999888 56788999998 4322111 11
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecC-CCeEEEEEcCCceeeEEeec------cccCeEEEEEccCCCEEEEEecCCCe
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHG------QEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
.+....+.++.+.| +++++++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++.. .++.
T Consensus 73 --~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~ 147 (276)
T 3no2_A 73 --APAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSE 147 (276)
T ss_dssp --CCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTE
T ss_pred --CCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCE
Confidence 11223578889999 5667777766 788888886 6776665541 223455678899999998887 8999
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccccc------CCeeEEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAA------DTVNGFSFH 363 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~ 363 (430)
|.+||.. ++... .... ...+..+...++|+++++++.+++|..+|..+|+.+..+..+. ..+..++..
T Consensus 148 v~~~d~~-G~~~w-~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 148 VREIAPN-GQLLN-SVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp EEEECTT-SCEEE-EEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred EEEECCC-CCEEE-EEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 9999998 64443 2221 1345567788999999999888899999999999988886442 127888999
Q ss_pred CCCcEEEEeeCCceee---ecCCCccccccCCCcEEEEeecccccccccCCC
Q 014125 364 PFLPMAASSSGHRRFP---VDDFEDLHLSGDENCVSVWSFLYASMMENADGI 412 (430)
Q Consensus 364 ~~~~~l~s~~~d~~~~---vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 412 (430)
++|.++++..... .. --+...++-...+|.+ +|.+........+.++
T Consensus 222 ~~G~i~v~~~~g~-~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 222 QNGGLYICNWQGH-DREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTSCEEEEEECTT-CTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCCCCEE
T ss_pred CCCCEEEEeccCc-cccccccCCceEEEECCCCCE-EEEecCcccccceeee
Confidence 9999888874210 00 0001112222346766 9998887777666653
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=8.1e-17 Score=144.93 Aligned_cols=221 Identities=11% Similarity=-0.019 Sum_probs=141.0
Q ss_pred cCCCCceEEEEeC-CCc--EEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCccc
Q 014125 134 SDPTSCVFASTTR-DHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 134 ~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~ 209 (430)
++|||+.|+.++. +|. |.+||+.+++.......+.. .+..+.|+|+++.|+ ++.++.|++||+.++....
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~- 116 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD-----NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV- 116 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB-----CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC-----CccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-
Confidence 3889999998887 674 88889988877665544332 344678999999998 4577899999998743211
Q ss_pred ccccccCCCCCCCcceEEE--EEcCCCCceEEE----------------------ecCCCeEEEEEcCCceeeEEeeccc
Q 014125 210 KYSTLKGNKEGQAGIMSAI--AFSPTHTGMLAI----------------------GSYSQTSAIYREDNMELLYVLHGQE 265 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~----------------------~~~dg~v~~~d~~~~~~~~~~~~~~ 265 (430)
. ...+...+... .++| ++.+++. ...+..|.+||+.+++.... ..+.
T Consensus 117 ~-------~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~ 187 (388)
T 3pe7_A 117 V-------YQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQEN 187 (388)
T ss_dssp E-------EECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEES
T ss_pred e-------eechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-ecCC
Confidence 0 11222233333 3477 4445543 22457899999998865544 3466
Q ss_pred cCeEEEEEcc-CCCEEEEEecC-----CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc-CC----
Q 014125 266 GGVTHVQFSR-DGNYLYTGGRK-----DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-DG---- 334 (430)
Q Consensus 266 ~~i~~~~~~~-~~~~l~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg---- 334 (430)
..+..++|+| +|+.|+..... ...|.++|+...... .+.. ......+..++|+|+|+.|+..+. ++
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--KVKT-HAEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--ESCC-CCTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--Eeee-CCCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 7789999999 99988877722 237888887665322 2211 111135778899999997765443 22
Q ss_pred cEEEEEcCCCCeec--ccccccC---CeeEEEEcCCCcEEEEe
Q 014125 335 LVHIYDLQTGKWIS--GFQAAAD---TVNGFSFHPFLPMAASS 372 (430)
Q Consensus 335 ~i~vwd~~~~~~~~--~~~~~~~---~v~~~~~~~~~~~l~s~ 372 (430)
.|++||+.+++... .+.++.. ....+.|+|+|+.|+..
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 39999999987432 2332111 12234789999877754
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=1.2e-15 Score=131.87 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=158.2
Q ss_pred CCeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeE
Q 014125 119 GESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV 196 (430)
Q Consensus 119 ~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 196 (430)
.....+++| +|+++ +++++..++.|..|+..++ ...+..... .+.+++++|+++++++. .++.|
T Consensus 27 ~~~~eg~~~-------d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-----~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 27 FTWTEGPVY-------VPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-----HQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp CSSEEEEEE-------EGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-----SEEEEEECTTCCEEEEETTTTEE
T ss_pred CccccCCeE-------eCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-----CcceeeECCCCcEEEEecCCCeE
Confidence 345667788 66787 7888888999999999887 444544332 68899999999988876 46899
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEE----ec-------------CCCeEEEEEcCCceeeE
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI----GS-------------YSQTSAIYREDNMELLY 259 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~v~~~d~~~~~~~~ 259 (430)
.+||..++.. ...... ........+..++++| +++++++ |+ ..+.|..++.. ++. .
T Consensus 93 ~~~d~~~g~~--~~~~~~--~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (296)
T 3e5z_A 93 ERQREPGGEW--ESIADS--FEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S 165 (296)
T ss_dssp EEECSTTCCE--EEEECE--ETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred EEEcCCCCcE--EEEeec--cCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence 9999865321 111000 0011123467899999 5567776 33 13466666665 443 3
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC-CCce-EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR-KAVQ-VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
.+..+......++|+|+++.+++.. .++.|.+|++. ++.. ...... ..+...+..++++++|+++++. ++.|.
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~-~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDT-GDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEET-TTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred EeecCCCCCccEEECCCCCEEEEeC-CCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 3444556778999999999985544 78999999997 3322 111222 2244556779999999876666 78899
Q ss_pred EEEcCCCCeecccccccCCeeEEEE-cCCCcEEEEeeCC
Q 014125 338 IYDLQTGKWISGFQAAADTVNGFSF-HPFLPMAASSSGH 375 (430)
Q Consensus 338 vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~d 375 (430)
+||.. ++.+..+..+.. +.+++| .|+++.|..++.+
T Consensus 241 ~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred EECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence 99987 778877877777 999999 5898888888754
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1e-15 Score=130.40 Aligned_cols=235 Identities=10% Similarity=-0.004 Sum_probs=156.2
Q ss_pred eeeeeeeccccCccCCCCceEE-EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~ 199 (430)
...++++ ++++++++ +...++.|.+|+..++........ ....+.++++++++.++++..++.|.+|
T Consensus 25 ~p~~i~~-------~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~p~~i~~~~~g~l~v~~~~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAV-------DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-----GLYQPQGLAVDGAGTVYVTDFNNRVVTL 92 (270)
T ss_dssp CEEEEEE-------CTTCCEEEEECSSSCEEEEECC-----EECCCC-----SCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CccceEE-------CCCCCEEEEccCCCCcEEEecCCCcccceEeeC-----CcCCcceeEECCCCCEEEEcCCCEEEEE
Confidence 4455555 77888777 547788999999766543221111 1125678999999997776668899999
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCE
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
|...... . .. .......+..++++| +++++++...++.|.+|+..+.............+.+++++++|+.
T Consensus 93 d~~~~~~--~---~~---~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l 163 (270)
T 1rwi_B 93 AAGSNNQ--T---VL---PFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV 163 (270)
T ss_dssp CTTCSCC--E---EC---CCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCE
T ss_pred eCCCceE--e---ee---ecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCE
Confidence 9765321 1 11 012224588999999 5567777777899999986654433322223346789999999985
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeE
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
+++.. .++.|.+||........ . .......+..++++++|.++++...++.|.+|+............+...+.+
T Consensus 164 ~v~~~-~~~~i~~~~~~~~~~~~-~---~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 164 YVTDT-DNNRVVKLEAESNNQVV-L---PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLA 238 (270)
T ss_dssp EEEEG-GGTEEEEECTTTCCEEE-C---CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEE
T ss_pred EEEEC-CCCEEEEEecCCCceEe-e---cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCcee
Confidence 55554 68899999988764322 1 1223366889999999988887777889999998765443322233457899
Q ss_pred EEEcCCCcEEEEeeCCceeeec
Q 014125 360 FSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 360 ~~~~~~~~~l~s~~~d~~~~vw 381 (430)
++++|+|+++++...++.|.++
T Consensus 239 i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEE
Confidence 9999999987777654444444
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=1.4e-14 Score=134.89 Aligned_cols=301 Identities=8% Similarity=0.014 Sum_probs=195.9
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCC--CCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC----
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD---- 135 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 135 (430)
.+..+.|||||++|++++.|+.|.+||+. +.+.. ..+..+.....++| +
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v------------------~~i~~G~~P~~ia~-------s~~~~ 252 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV------------------AEIKIGSEARSIET-------SKMEG 252 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE------------------EEEECCSEEEEEEE-------CCSTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe------------------EEEecCCCCceeEE-------ccccC
Confidence 46689999999999999999999999995 43221 11222334566777 6
Q ss_pred CCCceEEEEeC-CCcEEEEeccCCceeeeeeccccc-c----c-ccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCC
Q 014125 136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV-D----E-ITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGR 206 (430)
Q Consensus 136 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~-~----~-~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~ 206 (430)
|+|++++++.. +++|.++|..+.+.+..+...... . + ...+..+..++++..++.. .+|.|.++|......
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 58988887765 589999999999888876643210 0 1 1156788889887766643 679999999865321
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-----cccCeEEEEEccCCCEEE
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-----QEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~ 281 (430)
. . ...+ ........+.|+|++..++++...++.|.++|+.+++.+..+.. |.+.-..+ ++|++..++
T Consensus 333 ~-~-v~~i-----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~ 404 (567)
T 1qks_A 333 L-K-TTEI-----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW 404 (567)
T ss_dssp E-E-EEEE-----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred c-e-eeee-----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence 0 0 0111 11234668899996666666677789999999999987766653 32211122 578755555
Q ss_pred EEe-cCCCeEEEEeCCCCc------eEEEEeecccCCccceEEEEEcCCCCEEEEEcc-------CCcEEEEEcCCC---
Q 014125 282 TGG-RKDPYILCWDLRKAV------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ-------DGLVHIYDLQTG--- 344 (430)
Q Consensus 282 ~~~-~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~--- 344 (430)
+++ ..++.|.++|..+.. +....+.. ....-..+..+|++++|.+... .++|.|+|+.+.
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~---~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA---LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEec---CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 443 246899999998721 23333321 1222234678999999888663 358999999876
Q ss_pred --Ce-ecccc--------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccC
Q 014125 345 --KW-ISGFQ--------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENAD 410 (430)
Q Consensus 345 --~~-~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 410 (430)
.. +..+. .....+..+.|+|+|..+..+.+.+ . ..++.|.++|..+.+++..+.
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~-------~-----~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG-------K-----DQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC-------T-----TSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC-------C-----CCCCcEEEEECCCceEEEEeC
Confidence 21 12221 1234689999999999776653210 0 035677777777776665555
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=7.7e-15 Score=124.90 Aligned_cols=241 Identities=8% Similarity=0.018 Sum_probs=161.7
Q ss_pred ceeEEEECcCCceEE-EecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
...+++++|+|++++ +.+.++.|.+|+..+..... ........+.++++ ++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~~p~~i~~-------~~~g~l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-----------------LPFNGLYQPQGLAV-------DGAGTV 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-----------------CCCCSCCSCCCEEE-------CTTCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-----------------EeeCCcCCcceeEE-------CCCCCE
Confidence 578899999999777 55778899999876432110 00111134556666 778886
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
+++.. ++.|.+||....... .+... ....+..+++++++.++++. .++.|.+|+....... . . ..
T Consensus 81 ~v~~~-~~~i~~~d~~~~~~~-~~~~~----~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---~--~---~~ 146 (270)
T 1rwi_B 81 YVTDF-NNRVVTLAAGSNNQT-VLPFD----GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---V--L---PF 146 (270)
T ss_dssp EEEET-TTEEEEECTTCSCCE-ECCCC----SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE---E--C---CC
T ss_pred EEEcC-CCEEEEEeCCCceEe-eeecC----CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE---e--e---cc
Confidence 66655 889999998765432 22211 11267899999999877765 6788999965432110 0 0 11
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
.....+..++++| +++++++...++.|.+||............+...+.+++++++|..+++.. .++.|.+||.....
T Consensus 147 ~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 147 TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTT 224 (270)
T ss_dssp CSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSC
T ss_pred ccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCc
Confidence 2223467899999 456777777789999999887655433333336789999999996555554 78899999987653
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
... . ...+...+..++++|+|+++++...++.|+++++...+.
T Consensus 225 ~~~--~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 225 STV--L--PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEE--C--CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred cee--e--ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 221 1 122335688999999999888888999999999876543
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.73 E-value=5.2e-15 Score=129.54 Aligned_cols=256 Identities=7% Similarity=-0.008 Sum_probs=165.8
Q ss_pred CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc
Q 014125 80 EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL 159 (430)
Q Consensus 80 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 159 (430)
.+++|.+||..+++....+.... . ....+.....+.+ . ++.++++...++.|.+||..+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---------n--~~~lg~~~~~i~~-------~-~~~lyv~~~~~~~v~viD~~t~~ 75 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---------N--GFKLGDVAQSMVI-------R-DGIGWIVVNNSHVIFAIDINTFK 75 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---------H--SSCCBSCEEEEEE-------E-TTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEECCCCEEhhhhHhhh---------c--CcccCccceEEEE-------E-CCEEEEEEcCCCEEEEEECcccE
Confidence 48899999998875432221000 0 0011123344544 1 34556666678999999999999
Q ss_pred eeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceE
Q 014125 160 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 238 (430)
.+..+.... .+..++++++++.+++. .++.|.+||..+.... ..+ .. ....+.......+++ . ++.++
T Consensus 76 ~~~~i~~~~------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~-~~i-~~-g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 76 EVGRITGFT------SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT-GYI-EC-PDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp EEEEEECCS------SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE-EEE-EC-TTCCTTTCBCCCEEE-E-TTEEE
T ss_pred EEEEcCCCC------CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE-EEE-Ec-CCccccCCCcceEEE-E-CCEEE
Confidence 888775322 67789999998655565 6899999998763211 011 00 000111113445666 3 55566
Q ss_pred EEec-CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC----------CeEEEEeCCCCceEEEEeec
Q 014125 239 AIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD----------PYILCWDLRKAVQVVYKLYR 307 (430)
Q Consensus 239 ~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d----------~~i~i~d~~~~~~~~~~~~~ 307 (430)
++.. .++.|.++|..+++....+.. ......++++|+|++++++. .+ +.|.++|..+.. ....+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFT-VEKQFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTE-EEEEEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCe-EEEEEec
Confidence 6654 489999999999988877764 33457899999998666554 44 789999998774 3222211
Q ss_pred ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc--cccccCCeeEEEEcC-CCcEEEEe
Q 014125 308 SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG--FQAAADTVNGFSFHP-FLPMAASS 372 (430)
Q Consensus 308 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~ 372 (430)
........++++|++++|+++.. .|.+||+.+++.... +..+.....+++++| ++.+.++.
T Consensus 222 --~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 222 --KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp --CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred --CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 11236789999999999888765 899999998876432 222245788999999 45555554
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=6.7e-15 Score=127.08 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=162.3
Q ss_pred ecccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 55 ~~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
.+..+.....+++|+|+|+ +++++..++.|.+|+..++ . . ....+...+.++++
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-----------------~~~~~~~~~~~l~~------ 76 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-----------------PEMHPSHHQNGHCL------ 76 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-----------------EEESSCSSEEEEEE------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-----------------EEECCCCCcceeeE------
Confidence 3445566688999999998 7888888999999998754 1 1 11123356778888
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE----c--------------CCe
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----Y--------------NKS 195 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~--------------d~~ 195 (430)
+++++++++...++.|.+||..+++.......... .....+..++++|+|+++++. . .+.
T Consensus 77 -~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 -NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp -CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred -CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 77898888877778999999988876544332211 111246689999999988852 1 234
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-Ccee---eEEeeccccCeEEE
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMEL---LYVLHGQEGGVTHV 271 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~---~~~~~~~~~~i~~~ 271 (430)
|..++.. +. ... . ..+......++|+|++ +.+++.+.++.|.+|++. +++. ...+..+...+.++
T Consensus 155 l~~~~~~--g~-~~~---~----~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 155 VFRLAPD--GT-LSA---P----IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp EEEECTT--SC-EEE---E----ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred EEEECCC--CC-EEE---e----ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence 5555443 21 111 1 1233457889999955 455888888999999986 4443 22333345567889
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEE-cCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDI-EPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
+++++|+++++. ++.|.+||.... ....+ ..+.. +.+++| +|+++.|++++.++ +.-++..+.++
T Consensus 224 ~~d~~G~l~v~~---~~~v~~~~~~g~--~~~~~---~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 224 RVDAGGLIWASA---GDGVHVLTPDGD--ELGRV---LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEBTTSCEEEEE---TTEEEEECTTSC--EEEEE---ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EECCCCCEEEEc---CCeEEEECCCCC--EEEEE---ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 999999855443 788999998732 22222 22333 788999 68999888887764 55666665554
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=8.6e-14 Score=122.33 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=158.2
Q ss_pred eeecccCCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 53 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
...+..+...+.+++|+|+|++++++..++.|.+||..+++... ....+...+.+++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-----------------~~~~~~~~~~~i~~----- 94 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-----------------PFVSHKANPAAIKI----- 94 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-----------------EEECSSSSEEEEEE-----
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-----------------EeeCCCCCcceEEE-----
Confidence 34455667778999999999988888899999999987653210 11123457888888
Q ss_pred ccCCCCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC-------CeEEEEEc
Q 014125 133 ASDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDV 201 (430)
Q Consensus 133 ~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~v~d~ 201 (430)
+++++++++...+ +.|.+||..++.....+.... ....+..++++|++.++++... +.|..++.
T Consensus 95 --~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 95 --HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp --CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred --CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc---cCCcccceEECCCCCEEEEeccccccCCCceEEEEeC
Confidence 7788888877666 689999998876543332111 1236889999999988886642 44555554
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEE--------eeccccCeEEEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYV--------LHGQEGGVTHVQ 272 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~--------~~~~~~~i~~~~ 272 (430)
.. ...... ......+..++|+|++..++++.+.++.|.+||..+ +..... +..+ ..+..++
T Consensus 170 ~~--~~~~~~-------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 170 DF--RTVTPI-------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp TS--CCEEEE-------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred CC--CEEEEe-------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 32 111111 011234788999995554666667789999999864 332211 1111 3578899
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc---CCccceEEEEEcCCCCEEEEEccC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS---EHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
++++|+++++.. .++.|.+||.... . ...+.... ++...+..++|+|+++.|+.++.+
T Consensus 240 ~d~~G~l~v~~~-~~~~v~~~d~~g~-~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMY-GQGRVLVFNKRGY-P-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEE-TTTEEEEECTTSC-E-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEc-CCCEEEEECCCCC-E-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999998777766 7899999998532 2 22221111 122267889999998777666655
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=4.6e-15 Score=144.06 Aligned_cols=248 Identities=11% Similarity=-0.001 Sum_probs=161.1
Q ss_pred ccCCCceeEEEECcCCceEEEecCCC-----eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLTSSEDK-----TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+|...+..++|||||++||.++.++ .|++||+.+++.... ...+ ..+..++|
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------------~~~~-~~~~~~~w---- 178 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------------VLER-VKFSCMAW---- 178 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------EEEE-ECSCCEEE----
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------cccC-cccceEEE----
Confidence 34555788999999999999776543 899999987643210 1111 12567888
Q ss_pred CccCCCCceEEEEeCCCc----------------EEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEEE-Ec
Q 014125 132 SASDPTSCVFASTTRDHP----------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY 192 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 192 (430)
+|||+.|+.++.++. |++|++.+++.. ..+.... +...+..+.|+|+|++|+. +.
T Consensus 179 ---spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~---~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 179 ---THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD---EPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp ---CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEE
T ss_pred ---EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC---CCeEEEEEEEcCCCCEEEEEEE
Confidence 789999999988766 999999887632 2222211 1224678999999999883 33
Q ss_pred -----CCeEEEEEcCC------CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC---CeEEEEEcCCcee-
Q 014125 193 -----NKSVRVFDVHR------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL- 257 (430)
Q Consensus 193 -----d~~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~- 257 (430)
+..|++||+.. +..... .+ ..+...+.. .|+|++..+++.+..+ +.|.+||+.++..
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~l----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWV---KL----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCE---EE----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred ccCCCccEEEEEECcccccccCCccceE---Ee----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 56899999875 211111 11 122223333 4778566555555433 4799999987642
Q ss_pred -eEEeecccc--CeEEEEEccCCCEEEEEecCCCe--EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-c
Q 014125 258 -LYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-G 331 (430)
Q Consensus 258 -~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 331 (430)
...+..|.. .+..++|++++.++++.. .++. |.+|++.++... ..+ ..+...+..++++|++..++.. +
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-~~l---~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 325 KWKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-KIF---PLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp GCEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-EEE---CCCSSEEEEEECCTTCSEEEEEEE
T ss_pred cceeccCCCCCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-Eec---CCCCceEEEEecCCCCCEEEEEEe
Confidence 234444433 678899987776666666 7874 566777555422 222 2346678889999998766533 2
Q ss_pred ---cCCcEEEEEcCCCC
Q 014125 332 ---QDGLVHIYDLQTGK 345 (430)
Q Consensus 332 ---~dg~i~vwd~~~~~ 345 (430)
..+.|++||+.+++
T Consensus 400 s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSSCCCEEEEEETTSSS
T ss_pred CCCCCCEEEEEECCCCc
Confidence 34789999998877
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.71 E-value=3.4e-13 Score=116.50 Aligned_cols=270 Identities=10% Similarity=0.059 Sum_probs=180.8
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
....+.++++.++|+.+++...++.|.+|+.. ++... .. .......+..+++ ++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~---------------~~~~~~~~~~i~~-------~~~g 73 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE---------------VPTPDAKVMCLIV-------SSLG 73 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---------------CSSTTCCEEEEEE-------CTTS
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE---------------CCCCCCcceeEEE-------CCCC
Confidence 34568899999999988887788999999976 32210 00 0011245667777 6778
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.++++...++.|..+|.. ++.. .+..... ...+.++++.+++.++++. .++.|..++.. + .. ....
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~-~~~~----- 140 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFT-EYPLPQP---DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G-TI-YEYD----- 140 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-CE-EEEE-----
T ss_pred CEEEEecCCCeEEEECCC-CCeE-EecCCCC---CCCCccceECCCCCEEEEccCCCeEEEECCC-C-CE-EEcc-----
Confidence 877777778889999987 5543 2322111 1267899999999888876 47889999875 2 11 1110
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.......+..+++.+ +++++++...++.|..||. +++.... ...+...+..++++++|...++.. ..+.|..||.
T Consensus 141 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~- 216 (300)
T 2qc5_A 141 LPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT- 216 (300)
T ss_dssp CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-
T ss_pred CCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-
Confidence 111234688999999 4557777766889999998 4544332 223345688999999997665554 6778999998
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec-ccccccCCeeEEEEcCCCcEEEEee
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS-GFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
++....... ......+..++++++|++.++...++.|..||. +++... .+......+.++++.++|.+.++..
T Consensus 217 ~g~~~~~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 217 TGEISEYDI---PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp TCCEEEEEC---SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred CCcEEEEEC---CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 332222111 234566889999999997777767789999998 454332 2233345688999999988776654
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=1.2e-15 Score=147.77 Aligned_cols=247 Identities=13% Similarity=-0.013 Sum_probs=155.2
Q ss_pred cCCCceeEEEECcCCceEE-----EecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 58 IPNNFLKGIKWSPDGSSFL-----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~-----s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+|...+.+++|||||++|| .|+.+..|++||+.+++..... ... ......++|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~----------------~~~-~~~~~~~~w----- 175 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD----------------VIE-GGKYATPKW----- 175 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC----------------CBS-CCTTCCCEE-----
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc----------------ccC-cccccceEE-----
Confidence 5666799999999999999 4555678999999987542000 000 011256788
Q ss_pred ccCCCCceEEEEeCCCc-------------EEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EEcCC--
Q 014125 133 ASDPTSCVFASTTRDHP-------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK-- 194 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~-- 194 (430)
+|||+.|+.++.|.. |++|++.++... ..+... .+...+..+.|+|+|++|+ ++.++
T Consensus 176 --spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 176 --TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT---GDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp --CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC---CCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred --ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC---CCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 889999999988776 999999887632 222221 1222677899999999888 44444
Q ss_pred --eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCcee---eEEeecc-c
Q 014125 195 --SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMEL---LYVLHGQ-E 265 (430)
Q Consensus 195 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~~---~~~~~~~-~ 265 (430)
.|++++... ..... + ..+...+....+ +++. +++.+. .++.|.+||+.+++. ...+..+ .
T Consensus 251 ~~~l~~~~~~~--~~~~~---l----~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 319 (695)
T 2bkl_A 251 ENDVYWKRPGE--KDFRL---L----VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS 319 (695)
T ss_dssp EEEEEEECTTC--SSCEE---E----EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred ceEEEEEcCCC--CceEE---e----ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence 555554322 11211 1 112223444455 4355 666554 358899999987653 3333323 3
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE----ccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----GQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~ 341 (430)
..+..++|+ ++..+++.. .|+..++|.+.........+. ......+..++++|++..++.. ...+.|++||+
T Consensus 320 ~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 320 ASLLSVSIV-GGHLSLEYL-KDATSEVRVATLKGKPVRTVQ--LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp CEEEEEEEE-TTEEEEEEE-ETTEEEEEEEETTCCEEEECC--CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred CeEEEEEEE-CCEEEEEEE-ECCEEEEEEEeCCCCeeEEec--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 457888887 555666666 899888876552222222221 1225567778889998776633 33578999999
Q ss_pred CCCCe
Q 014125 342 QTGKW 346 (430)
Q Consensus 342 ~~~~~ 346 (430)
.+++.
T Consensus 396 ~~g~~ 400 (695)
T 2bkl_A 396 STGKS 400 (695)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 98764
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.70 E-value=1.4e-13 Score=122.07 Aligned_cols=284 Identities=11% Similarity=-0.043 Sum_probs=181.6
Q ss_pred ECcCCceEEEecC--CC---eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 68 WSPDGSSFLTSSE--DK---TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 68 ~sp~~~~l~s~~~--dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
..|++++++++.. .. +|.+||..+++....+. .+..- .+++ +||++.++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~------------------~g~~p-~i~~-------spDg~~ly 81 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN------------------GGFLP-NPVA-------AHSGSEFA 81 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec------------------CCCCC-CeEE-------CCCCCEEE
Confidence 3467776666553 22 88999998764321111 11111 4444 88999999
Q ss_pred EEe----------CCCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCc
Q 014125 143 STT----------RDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRD 207 (430)
Q Consensus 143 ~~~----------~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~ 207 (430)
++. .++.|.+||..+.+.+..+... ...........+.|+|+|++|+++ . ++.|.++| .+...
T Consensus 82 v~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~- 159 (373)
T 2mad_H 82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS- 159 (373)
T ss_pred EEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-
Confidence 886 3678999999998888776543 110001134589999999999854 2 47899999 76321
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-----ccccC-eEEEEEccCCCEEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGG-VTHVQFSRDGNYLY 281 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~ 281 (430)
. ..+ ... . .++.+.|++...+++.+.||.+.++|. +++...... ....+ .....+.+++..++
T Consensus 160 ~---~~~---i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 160 D---DQL---LSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred E---eEE---cCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 1 110 010 0 124556667777888889999999999 776653322 11122 23356677776666
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEcc----------CCcEEEEEcCC
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQ----------DGLVHIYDLQT 343 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~ 343 (430)
..+ ..+.+.+.|+.............. ........+.++|+++.++++.. .+.|.++|+.+
T Consensus 229 ~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t 307 (373)
T 2mad_H 229 WPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence 666 688999999976532211111000 01222344788999988777643 35799999999
Q ss_pred CCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccc
Q 014125 344 GKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMEN 408 (430)
Q Consensus 344 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~ 408 (430)
++.+..+.. .....+++|+|+|+ +++++.. .++.|.++|....+.+..
T Consensus 308 ~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~----------------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 308 GQTSSQISL-GHDVDAISVAQDGGPDLYALSA----------------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcC----------------CCCeEEEEECCCCCEEee
Confidence 999888863 33689999999999 6766652 357788888887777665
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=1.2e-15 Score=147.75 Aligned_cols=242 Identities=11% Similarity=0.023 Sum_probs=154.9
Q ss_pred CeeeeeeeccccCccCCCCceEE-----EEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFA-----STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~-----~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+..++| ||||++|| .|+.+..|++||+.+++.+....... . ....++|+|||+.|+ ++.+
T Consensus 121 ~~~~~~~~-------SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~----~-~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 121 VSLGTWAV-------SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG----G-KYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp EEEEEEEE-------CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC----C-TTCCCEECTTSSEEEEEECC
T ss_pred EEEEEEEE-------CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc----c-cccceEEecCCCEEEEEEec
Confidence 46788888 88999998 34445689999999987641101100 0 125789999999888 4565
Q ss_pred Ce-------------EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC----eEEEEEcCCce
Q 014125 194 KS-------------VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNME 256 (430)
Q Consensus 194 ~~-------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~ 256 (430)
.. |++|++.++..... +......+...+..+.|+|++. .|+.++.++ .|++++..+++
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT----VVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE----EEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce----EEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc
Confidence 54 99999976432111 1111233445788999999654 555554444 67777665554
Q ss_pred eeEEeeccccCeEEEEEccCCCEEEEEecC---CCeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRK---DPYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
. ..+..+...+....+ ++|. ++..+.. ++.|.+||+.++... ...+.. ......+..++|+ ++.++++...
T Consensus 264 ~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp C-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred e-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEE
Confidence 3 344445556666666 6777 6655522 578999999776420 111211 1224567788888 6778889999
Q ss_pred CCcEEEEEcC-CCCeecccccc-cCCeeEEEEcCCCcEEEEee----CCceeeecCC
Q 014125 333 DGLVHIYDLQ-TGKWISGFQAA-ADTVNGFSFHPFLPMAASSS----GHRRFPVDDF 383 (430)
Q Consensus 333 dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~----~d~~~~vw~~ 383 (430)
|+..+||.++ +++....+..+ .+.+..++++|++..++... ..+.+.+|+.
T Consensus 339 dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 339 DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 9988887665 46656666555 56788899999998666332 2466777754
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=4.9e-16 Score=140.16 Aligned_cols=217 Identities=7% Similarity=-0.082 Sum_probs=139.7
Q ss_pred CCCCceEEEEeCC---CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|+|+.|+..... ..|.+||+.+++.......... ....+.|+|+++.|+ ++.++.|++||+..+... .
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~--~ 116 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD-----NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ--V 116 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB-----CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE--E
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC-----ccccceECCCCCEEEEEEcCCcEEEEECCCCCcE--E
Confidence 8899998877543 3688889988875443322211 222478999999997 567788999998764211 1
Q ss_pred cccccCCCCCCCcceEE-------------------EEEcCCCCceEEEe-----cCCCeEEEEEcCCceeeEEeecccc
Q 014125 211 YSTLKGNKEGQAGIMSA-------------------IAFSPTHTGMLAIG-----SYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
... .+...... +.|+|++. .++.. ..+..|++||+.+++..... .+..
T Consensus 117 ~~~------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~ 188 (396)
T 3c5m_A 117 IYT------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA 188 (396)
T ss_dssp EEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred EEe------cccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence 111 01111111 35677443 44433 45678999999887765444 4667
Q ss_pred CeEEEEEcc-CCCEEEEEecCC------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----C
Q 014125 267 GVTHVQFSR-DGNYLYTGGRKD------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----G 334 (430)
Q Consensus 267 ~i~~~~~~~-~~~~l~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g 334 (430)
.+..+.|+| +++.|+..+ .+ ..|.+||+...... .+.. ......+..++|+|+|++|+.++.+ +
T Consensus 189 ~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~--~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVR--KIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp CEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCE--ESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred ccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCcee--Eeec-cCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 889999999 788777665 33 46888998765321 2211 1113357789999999988777554 4
Q ss_pred cEEEEEcCCCCeecccccccCCeeEEEEcC-CCcEEEEee
Q 014125 335 LVHIYDLQTGKWISGFQAAADTVNGFSFHP-FLPMAASSS 373 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~ 373 (430)
.|++||+.+++...... .. ... +.|+| +|+++++++
T Consensus 265 ~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 265 VIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEE
T ss_pred eEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEec
Confidence 49999999887543222 11 223 89999 999888765
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.69 E-value=7.9e-14 Score=121.45 Aligned_cols=238 Identities=9% Similarity=0.012 Sum_probs=158.1
Q ss_pred eeeeeeeccccCccCCCCceEEE-------EeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEEEc
Q 014125 121 SVYDFCWFPHMSASDPTSCVFAS-------TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGY 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 192 (430)
...+++| ++++.++++ +..++.|.+||..+++...... .........+.+++++++ +.+++++.
T Consensus 19 ~~~~~~~-------~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 19 GAEGPVF-------DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp TCEEEEE-------CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET
T ss_pred CccCceE-------CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC
Confidence 3456677 678887777 5778899999988887543221 100011236789999999 87777776
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC---------------CeEEEEEcCCcee
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------------QTSAIYREDNMEL 257 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~v~~~d~~~~~~ 257 (430)
.+.|.+||.. +. . .... ...........+.+++++| +++++++...+ +.|..|+.. ++.
T Consensus 91 ~~~l~~~d~~-g~-~-~~~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 91 RLGLLVVQTD-GT-F-EEIA-KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp TTEEEEEETT-SC-E-EECC-SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CCCEEEEeCC-CC-E-EEEE-eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 6689999986 22 1 1110 0000011224578999999 45666666554 578888765 544
Q ss_pred eEEeeccccCeEEEEEc----cCCCEEEEEecCCCeEEEEeCC-CCceEE-EEeecccCCc-cceEEEEEcCCCCEEEEE
Q 014125 258 LYVLHGQEGGVTHVQFS----RDGNYLYTGGRKDPYILCWDLR-KAVQVV-YKLYRSSEHT-NQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 258 ~~~~~~~~~~i~~~~~~----~~~~~l~~~~~~d~~i~i~d~~-~~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 330 (430)
... ..+......++|+ |+++.|+++...++.|.+||+. ++.... ........+. ..+..++++++|+++++.
T Consensus 165 ~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 165 IQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 332 2344557889999 9998777775468999999986 332111 1111122232 567889999999988887
Q ss_pred ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..++.|.+||..+++.+..+..+...+.+++|+|+++.|..++
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 7788999999988887777766667899999999999555544
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=2.8e-14 Score=124.85 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=170.3
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....+.+. +++.+++...++.|.+||..+++....+ ........+++ ++++.+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i------------------~~~~~p~~i~~-------~~~g~l 97 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI------------------TGFTSPRYIHF-------LSDEKA 97 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE------------------ECCSSEEEEEE-------EETTEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc------------------CCCCCCcEEEE-------eCCCeE
Confidence 345677774 4556666677899999999877543222 12245666666 557755
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+++...++.|.+||+.+++....+..............+++ .+++++++. .++.|.++|+.+.... ..+.
T Consensus 98 yv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~----~~i~--- 169 (328)
T 3dsm_A 98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV----DELT--- 169 (328)
T ss_dssp EEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE----EEEE---
T ss_pred EEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE----EEEE---
Confidence 55554889999999999988777665431111113446666 455555555 3889999999764211 1111
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCC----------CeEEEEEcCCceeeEEeecc-ccCeEEEEEccCCCEEEEEecCC
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYS----------QTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKD 287 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~d 287 (430)
. ......+.++| ++++++++..+ +.|.++|..+++....+... ......++|+|+++.|+++. .
T Consensus 170 -~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~- 244 (328)
T 3dsm_A 170 -I-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N- 244 (328)
T ss_dssp -C-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S-
T ss_pred -c-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c-
Confidence 1 12245788899 45566666554 78999999998877666532 23689999999999999876 4
Q ss_pred CeEEEEeCCCCceEEEEeecccCCccceEEEEEcC-CCCEEEEE----ccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 288 PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP-SGRHLGTG----GQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 288 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
.|.+||..+......... .........++++| ++.+.++. ..++.|.+||.. ++.+..+... .....++|
T Consensus 245 -~v~~~d~~t~~~~~~~~~--~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFL--EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp -SEEEEETTCSSCCSSCSB--CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred -EEEEEECCCCceeeeeee--cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 899999987643210110 11145688899999 55666665 568899999998 9988887643 23455555
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=3e-13 Score=114.81 Aligned_cols=246 Identities=11% Similarity=0.031 Sum_probs=164.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
.++.|++++.|+.|.+||.++++....+... ....+.++.+ +|+|++|+ +.++.|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----------------~~~~~~~~~~-------~pdG~ilv--s~~~~V 58 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE----------------KGWECNSVAA-------TKAGEILF--SYSKGA 58 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC----------------TTCCCCEEEE-------CTTSCEEE--ECBSEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC----------------ccCCCcCeEE-------CCCCCEEE--eCCCCE
Confidence 3679999999999999999887553322211 1124555666 77899888 357779
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-c-CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (430)
..||. +++.+..+..... ..+.++.+.++|+++++. . ++.|..+|. .+.....+. +......+......+
T Consensus 59 ~~~d~-~G~~~W~~~~~~~----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~-~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 59 KMITR-DGRELWNIAAPAG----CEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTE-FETGIERPHAQFRQI 130 (276)
T ss_dssp EEECT-TSCEEEEEECCTT----CEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEE-ECCSCSSGGGSCSCC
T ss_pred EEECC-CCCEEEEEcCCCC----ccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEe-ccCCCCcccccccCc
Confidence 99999 8998888876421 167788999999999965 3 556666654 232221111 111111222234455
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS 308 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 308 (430)
++.+ +++++++...++.|..||.. ++.+..+... ....++.+.++|+.++++. .++.|..+|..+++.....-...
T Consensus 131 ~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 131 NKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp EECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEEEEEEGGG
T ss_pred eECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEEEEecCCC
Confidence 6778 66789999999999999998 9988888754 4566788899999888887 78899999999875544322110
Q ss_pred -c-CCccceEEEEEcCCCCEEEEEccC--------CcEEEEEc-CCCCeecccccc
Q 014125 309 -S-EHTNQRILFDIEPSGRHLGTGGQD--------GLVHIYDL-QTGKWISGFQAA 353 (430)
Q Consensus 309 -~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~~~ 353 (430)
. .....+..++..++|.++++.... +..+++.+ .+++.+.++..+
T Consensus 207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 1 122347788889999988876321 23355555 467776666543
No 198
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=3.9e-14 Score=125.25 Aligned_cols=233 Identities=10% Similarity=0.107 Sum_probs=147.6
Q ss_pred CceeEEEECcCCceEEEecCC---Ce--EEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC
Q 014125 61 NFLKGIKWSPDGSSFLTSSED---KT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~d---g~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (430)
..+..++|||||++||.++.+ +. |.+|++.+++. ........ +..++| +
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~------------------~~l~~~~~-~~~~~w-------s 112 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS------------------KKILEAKN-IRSLEW-------N 112 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE------------------EEEEEESE-EEEEEE-------C
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce------------------EEEEcCCC-ccceeE-------C
Confidence 457889999999999987754 33 77777765421 11111223 888899 7
Q ss_pred CCCceEEEEeCC---------------------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEE
Q 014125 136 PTSCVFASTTRD---------------------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (430)
Q Consensus 136 ~~~~~l~~~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (430)
|+++.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|++ ++
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg-~~ 184 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDK-IV 184 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTE-EE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCe-EE
Confidence 789988887642 5699999988876344433 1 45688999999 66
Q ss_pred EEE-cC------C-eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEc
Q 014125 189 FAG-YN------K-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYRE 252 (430)
Q Consensus 189 ~~~-~d------~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~ 252 (430)
+++ .+ . ...+|.++ .+. .. .+. .+ ..+..+ +|++. .|+.++.+ ..|.+||
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~d-~~~-~~---~l~----~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d- 250 (347)
T 2gop_A 185 VNVPHREIIPQYFKFWDIYIWE-DGK-EE---KMF----EK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD- 250 (347)
T ss_dssp EEEECCCSSCCSSCCEEEEEEE-TTE-EE---EEE----EE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC-
T ss_pred EEEecccccccccccccEEEeC-CCc-eE---Eec----cC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC-
Confidence 654 32 2 44555554 221 11 111 11 334444 88555 45444432 4688888
Q ss_pred CCceeeEEeeccccCeEE-EEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
+++.......+...+.. +.|+ ++ .+++++ .++.+++| +.++ ... .+ ..+...+..++|+| .++++++
T Consensus 251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g-~~~-~~---~~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDG-EIK-PI---AKGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp -SSCEEESSTTCCSEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESS-SEE-EE---ECSSSEEEEEEESS--SEEEEEE
T ss_pred -CCceEeccccCCcccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCC-ceE-EE---ecCCCeEEeeeeeC--cEEEEEc
Confidence 55555445556677886 9999 88 777777 89999999 8743 322 22 13366789999999 6777777
Q ss_pred cCCcE-EEEEcCCCCeecccccccC
Q 014125 332 QDGLV-HIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 332 ~dg~i-~vwd~~~~~~~~~~~~~~~ 355 (430)
.++.. .+|.++ ++ ...+..|..
T Consensus 319 ~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 319 TATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp CSSSCCEEEEES-SS-EEECCCTTS
T ss_pred CCCChHHheEeC-Cc-EEEeccccH
Confidence 77664 777766 54 334444443
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=9.1e-14 Score=121.51 Aligned_cols=288 Identities=11% Similarity=0.044 Sum_probs=183.2
Q ss_pred EECcCCceEEEecC-----CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 67 KWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 67 ~~sp~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
...|+++.++.... ++.|.+.|..+++....+. .+. .+ . +++ +|||+++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~----------------vG~-~P-~-va~-------spDG~~l 92 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----------------GGF-LP-N-PVV-------ADDGSFI 92 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----------------ECS-SC-E-EEE-------CTTSSCE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE----------------CCC-CC-c-EEE-------CCCCCEE
Confidence 34678877776654 6799999998765432211 111 12 2 555 8899998
Q ss_pred EEEe----------CCCcEEEEeccCCceeeeeeccccc--ccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCC
Q 014125 142 ASTT----------RDHPIHLWDATTGLLRCTYRAYDAV--DEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGR 206 (430)
Q Consensus 142 ~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~ 206 (430)
+++. .++.|.+||..+.+.+..+...... ........+.|+|||++++++ . ++.|.++|+.+...
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 8876 3678999999999988887653210 001134579999999998854 3 68999999987321
Q ss_pred cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-ceeeEEeecc----ccCeE-EEEEc-cCCCE
Q 014125 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQ----EGGVT-HVQFS-RDGNY 279 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~ 279 (430)
...+.. .+ +....|.+...+++.+.||++.+.++.+ ++.......+ ..++. ...|. ++|++
T Consensus 173 ----v~tI~v--~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 173 ----KRMLDV--PD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp ----EEEEEC--CS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred ----EEEEEC--CC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 111110 01 1122343666777888899999999876 5543221111 12221 24554 67766
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeec--------ccCCccceEEEEEcCCCCEEEEEcc----------CCcEEEEEc
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYR--------SSEHTNQRILFDIEPSGRHLGTGGQ----------DGLVHIYDL 341 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~ 341 (430)
++ .+ .+|.|++.|+.+.......... ..-.......++++|+++.++.... .+.|.+.|+
T Consensus 241 ~~-vs-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 241 VW-PT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EE-EB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EE-Ee-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 55 44 5899999999765422111110 0001122334777999888777643 257999999
Q ss_pred CCCCeecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCC
Q 014125 342 QTGKWISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADG 411 (430)
Q Consensus 342 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 411 (430)
.+++.+..+... ..+.+|+++|+++ +|+++.. .++.|.++|...++.+..+..
T Consensus 319 ~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~----------------~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 319 KTGERLAKFEMG-HEIDSINVSQDEKPLLYALST----------------GDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TTCCEEEEEEEE-EEECEEEECSSSSCEEEEEET----------------TTTEEEEEETTTCCEEEEECC
T ss_pred CCCeEEEEEECC-CCcceEEECCCCCeEEEEEcC----------------CCCeEEEEECCCCcEEEEecC
Confidence 999999988743 3788999999997 6666542 467788888887777666654
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=3e-12 Score=110.50 Aligned_cols=236 Identities=8% Similarity=0.029 Sum_probs=164.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+.++++ +++|+++++...++.|.+||.. ++.. .+.... ....+.++++++++.++++. .++.|..
T Consensus 15 ~~~~~i~~-------d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 15 TGPYGITV-------SDKGKVWITQHKANMISCINLD-GKIT-EYPLPT---PDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTT-CCEE-EEECSS---TTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCccceEE-------CCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCc---ccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 46778887 7788887777668899999988 5543 222211 11368899999999988876 4788999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 277 (430)
|+... . ..... . ......+..++++| ++.++++...++.|..||. +++... ........+..++++++|
T Consensus 83 ~~~~g--~-~~~~~-~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 83 ITKKG--I-IKEYT-L----PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp ECTTS--C-EEEEE-C----SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred ECCCC--c-EEEEe-C----CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence 98752 1 11111 1 11234688999998 5667777777899999998 554432 222344578999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADT 356 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~ 356 (430)
..+++.. .++.|..||. ++...... .......+..++++++|.+.++...++.|.+||. +++.... +..+...
T Consensus 153 ~l~v~~~-~~~~i~~~~~-~g~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 226 (299)
T 2z2n_A 153 ALWFTEN-QNNAIGRITE-SGDITEFK---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNAR 226 (299)
T ss_dssp CEEEEET-TTTEEEEECT-TCCEEEEE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CEEEEeC-CCCEEEEEcC-CCcEEEee---CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCC
Confidence 7666655 6789999998 44332211 1233456789999999998777777889999999 6664332 2334467
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+++++++|.++++...++.|.+++.
T Consensus 227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ceeEEECCCCCEEEeccCCceEEEECC
Confidence 899999999997777766777777764
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.63 E-value=9.3e-13 Score=113.54 Aligned_cols=232 Identities=12% Similarity=0.082 Sum_probs=154.1
Q ss_pred eeeeeeeccccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEE
Q 014125 121 SVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~ 199 (430)
-..+..| ++ ++.++++...++.|..||..+++.. .+... ..+.+++++++++++++. ++.|.+|
T Consensus 14 ~~Egp~w-------~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------~~~~~i~~~~dG~l~v~~-~~~l~~~ 78 (297)
T 3g4e_A 14 CGESPVW-------EEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD------APVSSVALRQSGGYVATI-GTKFCAL 78 (297)
T ss_dssp BEEEEEE-------ETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS------SCEEEEEEBTTSSEEEEE-TTEEEEE
T ss_pred cccCCeE-------ECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC------CceEEEEECCCCCEEEEE-CCeEEEE
Confidence 3445667 44 4556777777899999999887652 33222 268899999999966554 6789999
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-----------CCeEEEEEcCCceeeEEeeccccCe
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----------SQTSAIYREDNMELLYVLHGQEGGV 268 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~v~~~d~~~~~~~~~~~~~~~~i 268 (430)
|..+.. ...+.... .......+..++++|+ ++++++... .+.|..++.. ++.. .+.......
T Consensus 79 d~~~g~--~~~~~~~~--~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~p 151 (297)
T 3g4e_A 79 NWKEQS--AVVLATVD--NDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDIS 151 (297)
T ss_dssp ETTTTE--EEEEEECC--TTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBE
T ss_pred ECCCCc--EEEEEecC--CCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccc
Confidence 986532 11111110 1112345889999994 455554422 2345555443 3332 233344556
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCC--CCceEE-EEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLR--KAVQVV-YKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~--~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
+.++|+|+++.|+.+...++.|.+|++. ++.... ..+.........+..++++++|++.++...++.|.+||..+++
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 8999999999887776578999999874 332111 1122222334567889999999888877778889999999999
Q ss_pred eecccccccCCeeEEEEc-CCCcEEEEeeC
Q 014125 346 WISGFQAAADTVNGFSFH-PFLPMAASSSG 374 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~ 374 (430)
.+..+..+...+++++|. |+++.|..++.
T Consensus 232 ~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 998888777789999998 88876655553
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.62 E-value=5.5e-13 Score=116.57 Aligned_cols=266 Identities=11% Similarity=0.087 Sum_probs=161.1
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+++||||++|+++. .++.|.+||..+.+....+. ...+..+. ..-.|....+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~----------------v~~g~r~~-~g~~P~~~a~ 144 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE----------------LPDAPRFL-VGTYPWMTSL 144 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE----------------ETTCCCCC-BSCCGGGEEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEE----------------CCCccccc-cCCCCceEEE
Confidence 499999999888775 35789999998875432221 11100000 0002333444
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEE-EEEcCCeEEEEEcCCCCCccccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+|||++++++.. ++.|.++|+.+++.+..+..... ...+....+.+ +.+.||.+.+.++...+......
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 899999988864 68899999999999888865321 11222122333 35577777777776533221100
Q ss_pred ccccCCCCCCCcceE-EEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEee----------ccccCeEEEEEccCCC
Q 014125 212 STLKGNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLH----------GQEGGVTHVQFSRDGN 278 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~----------~~~~~i~~~~~~~~~~ 278 (430)
...+.....++. ...|.+.++++++ .+.+|+|++.|+.+.. ....+. ...+....++++|+++
T Consensus 217 ---~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~ 292 (386)
T 3sjl_D 217 ---TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 292 (386)
T ss_dssp ---CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred ---cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCC
Confidence 011111111221 2355432444444 5558999999997654 222221 0123445688899999
Q ss_pred EEEEEecC---------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEE-ccCCcEEEEEcCCCCee
Q 014125 279 YLYTGGRK---------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTG-GQDGLVHIYDLQTGKWI 347 (430)
Q Consensus 279 ~l~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~vwd~~~~~~~ 347 (430)
.+++.... .+.|.++|+.+.+... .+. -...+..++++||++ +|++. ..++.|.++|..+++.+
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~-~i~----vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA-KFE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEE----EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEE-EEE----CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 98887511 2579999999985443 321 123677899999996 66664 45899999999999999
Q ss_pred cccccccCCeeEEEEcCC
Q 014125 348 SGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 348 ~~~~~~~~~v~~~~~~~~ 365 (430)
.++... +.-..|.+++|
T Consensus 368 ~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 368 RSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECCC-CSSCCEEEECC
T ss_pred EEecCC-CCCceeEECCc
Confidence 888743 33345555554
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=1.8e-13 Score=133.45 Aligned_cols=239 Identities=13% Similarity=0.039 Sum_probs=152.1
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcCC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK 194 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~ 194 (430)
.+..++| ||||++|+.++.+ ..|++||+.+++.+.... ... .+..++|+|| +.|+ ++.++
T Consensus 164 ~~~~~~~-------SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~-----~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 164 ALDAWAA-------SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV-----KFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp EEEEEEE-------CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE-----ESCCCEESTT-SEEEEEECCC
T ss_pred EEEeEEE-------CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc-----eeccEEEECC-CEEEEEEecC
Confidence 6777888 8899999877654 359999999998754311 111 2357899999 8777 44443
Q ss_pred --------------eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCc
Q 014125 195 --------------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNM 255 (430)
Q Consensus 195 --------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~ 255 (430)
.|++|++.++..... +......+...+..+.|+|++. .|+..+.+ ..|++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~----lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ----PVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCE----EEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETT
T ss_pred cccccccccCCCCCEEEEEECCCCchhCE----EEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCC
Confidence 388899865421111 1111123334588999999554 55554433 48999999876
Q ss_pred --eeeEEeeccccCeEEEEEccCCCEEEEEecC---CCeEEEEeCCCCc-eEEEEeecccCCccceEEEEEcCCCCEEEE
Q 014125 256 --ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK---DPYILCWDLRKAV-QVVYKLYRSSEHTNQRILFDIEPSGRHLGT 329 (430)
Q Consensus 256 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 329 (430)
+....+..+...+.... +|+|+.|+..+.. ++.|.+||+.++. ... .+. ..+...+..++++ ++.++++
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-~l~--~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD-TVV--PESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEE-EEE--CCCSSEEEEEEEE-BTEEEEE
T ss_pred CCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccE-EEe--cCCCCeEEEEEEE-CCEEEEE
Confidence 31445554555555554 4899988887722 3469999988742 222 222 2334456677887 5677888
Q ss_pred EccCCcEEEEEcC-CCCeeccccc-ccCCeeEEEEcCCCcEEEEe-e---CCceeeecCC
Q 014125 330 GGQDGLVHIYDLQ-TGKWISGFQA-AADTVNGFSFHPFLPMAASS-S---GHRRFPVDDF 383 (430)
Q Consensus 330 ~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~---~d~~~~vw~~ 383 (430)
...|+..+||.++ +++....+.. +.+.+..+.++|+++.|+.. + ..+.+.+||.
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 8889887777554 4555565654 35678899999998855532 2 2356666653
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.62 E-value=1.1e-13 Score=123.26 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=182.3
Q ss_pred cCCceEEEecC-C----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 70 PDGSSFLTSSE-D----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 70 p~~~~l~s~~~-d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
|+++.++++.. + +.|.++|..+.+....+. .+. .+ .+.+ +||++.++++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~----------------vG~-~P--gia~-------SpDgk~lyVa 135 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD----------------GGF-LP--HPVA-------AEDGSFFAQA 135 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE----------------ECS-SC--EEEE-------CTTSSCEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE----------------CCC-CC--ceEE-------CCCCCEEEEE
Confidence 35555544433 2 699999998775432221 111 12 4555 8899998888
Q ss_pred e----------CCCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCccc
Q 014125 145 T----------RDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 145 ~----------~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~~~ 209 (430)
. .++.|.++|..+.+.+..+... ...........+.++|||++++++ . ++.|.+.|+.+...
T Consensus 136 n~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--- 212 (426)
T 3c75_H 136 STVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--- 212 (426)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---
T ss_pred eccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---
Confidence 6 4678999999999988887653 100001134578999999999865 2 57899999987321
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE----eeccccCe-EEEEEccCCCEEEEEe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----LHGQEGGV-THVQFSRDGNYLYTGG 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~ 284 (430)
...+.. + . +....|++...+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++..++...
T Consensus 213 -v~~I~v---~--g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s 283 (426)
T 3c75_H 213 -DRMLDV---P--D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT 283 (426)
T ss_dssp -EEEEEC---C--S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB
T ss_pred -EEEEEc---C--C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe
Confidence 111110 0 0 1233454556777777888888888866654422 11111221 2457799999888887
Q ss_pred cCCCeEEEEeCCCCceEEEEeeccc--------CCccceEEEEEcCCCCEEEEEcc----------CCcEEEEEcCCCCe
Q 014125 285 RKDPYILCWDLRKAVQVVYKLYRSS--------EHTNQRILFDIEPSGRHLGTGGQ----------DGLVHIYDLQTGKW 346 (430)
Q Consensus 285 ~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~ 346 (430)
..+.|.+.|+.............. ........++++|+++.+++... ++.|.++|+.+.+.
T Consensus 284 -~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 284 -YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp -TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred -CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 789999999876532211111000 00111123689999887776642 35799999999999
Q ss_pred ecccccccCCeeEEEEcCCCc-EEEEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 347 ISGFQAAADTVNGFSFHPFLP-MAASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 347 ~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
+..+.... ...+++|+|+++ +++++.. .++.|.++|....+.+..+
T Consensus 363 v~~I~vg~-~P~gia~spDg~~~lyv~n~----------------~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 363 INKIELGH-EIDSINVSQDAEPLLYALSA----------------GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEE-EECEEEECCSSSCEEEEEET----------------TTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCC-CcCeEEEccCCCEEEEEEcC----------------CCCeEEEEECCCCCEEEEe
Confidence 99887433 589999999999 8887763 3678888888877777664
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=2.4e-13 Score=132.59 Aligned_cols=248 Identities=11% Similarity=0.025 Sum_probs=149.4
Q ss_pred cCCCceeEEEECcCCceEEEecCC-----CeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 58 IPNNFLKGIKWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 58 ~h~~~v~~~~~sp~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+|...+..++|||||++||.++.+ ..|++||+.+++.... ..+...+..++|
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~------------------~~~~~~~~~~~w----- 216 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD------------------ELKWVKFSGLAW----- 216 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE------------------EEEEEESCCCEE-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc------------------cCCCceeccEEE-----
Confidence 344468899999999999987653 4699999988753210 001112356778
Q ss_pred ccCCCCceEEEEeCCCc--------------EEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EEcC--
Q 014125 133 ASDPTSCVFASTTRDHP--------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-- 193 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~--------------i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-- 193 (430)
+|| +.|+.++.++. |++|++.++... ..+.... +...+..+.|+|||++|+ ++.+
T Consensus 217 --spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~---~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 217 --LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE---LPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp --STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEECTT
T ss_pred --ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC---CCeEEEEEEECCCCCEEEEEEEccC
Confidence 778 88888877654 889998877532 2222211 112467899999999888 4433
Q ss_pred ---CeEEEEEcCCCCCc-ccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---CCeEEEEEcCCc--eeeEEeecc
Q 014125 194 ---KSVRVFDVHRPGRD-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNM--ELLYVLHGQ 264 (430)
Q Consensus 194 ---~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~--~~~~~~~~~ 264 (430)
..|++||+..+... .. .+. .+........ +|++..+++.... ++.|.+||+.++ +....+..+
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~---~l~----~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 362 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVT---ALI----PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES 362 (741)
T ss_dssp CSCCEEEEEEEETTEECCCE---EEE----CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred CCcceEEEEECCCCCCcccE---Eec----CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence 38999998764111 11 111 1112233333 3645544444332 456999999874 334444444
Q ss_pred ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEE----ccCCcEEEEE
Q 014125 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG----GQDGLVHIYD 340 (430)
Q Consensus 265 ~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd 340 (430)
...+..++|+ ++..+++.. .|+..++|.+.........+. ......+..++++|++..|+.. ...+.|++||
T Consensus 363 ~~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 363 KDNLESVGIA-GNRLFASYI-HDAKSQVLAFDLDGKPAGAVS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp SSEEEEEEEE-BTEEEEEEE-ETTEEEEEEEETTSCEEEECB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEE-ECCEEEEEEEeCCCCceeecc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 4556677776 455555565 888877775542112222221 1235668889999998766522 3357899999
Q ss_pred cCCCCe
Q 014125 341 LQTGKW 346 (430)
Q Consensus 341 ~~~~~~ 346 (430)
+.+++.
T Consensus 439 ~~tg~~ 444 (741)
T 1yr2_A 439 PATAKT 444 (741)
T ss_dssp TTTTEE
T ss_pred CCCCcE
Confidence 988763
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=9.2e-12 Score=110.37 Aligned_cols=250 Identities=11% Similarity=0.013 Sum_probs=155.0
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+++||||++|+.+. .++.|.+||..+.+....+.... . .....+..-..+.|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~--------~--~~~~~g~~p~~~~~------- 132 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--------A--PRFDVGPYSWMNAN------- 132 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC--------c--cccccCCCccceEE-------
Confidence 899999999999885 36789999998664432221110 0 00000112234445
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeee-eecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCCccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
+|||++|+++.. ++.|.++| .+++.+.. +.... ++.+.|++.. ++.+.||.+.++|. .......
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 889999998874 47899999 99988766 54322 2445555533 33457899999998 5322111
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeec----------cccCeEEEEEccCC
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHG----------QEGGVTHVQFSRDG 277 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~ 277 (430)
.. ......+.........+.++++.++++. ..+.+.+.|+.+.. .+..+.. .......++++|++
T Consensus 202 -~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 202 -GL-VGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred -Ee-ccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 00 0000011111122345666555455544 67899999987543 2222211 11234457899999
Q ss_pred CEEEEEec---------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCCCCe
Q 014125 278 NYLYTGGR---------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~ 346 (430)
+.++++.. ..+.|.++|+.+.+.. ..+. .......++|+|||+ +++++. .++.|.++|+.+++.
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv-~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-SQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEE-EEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 98888752 1357999999887433 2331 223578899999999 777777 489999999999999
Q ss_pred eccc
Q 014125 347 ISGF 350 (430)
Q Consensus 347 ~~~~ 350 (430)
+..+
T Consensus 354 v~~i 357 (373)
T 2mad_H 354 DQST 357 (373)
T ss_pred Eeee
Confidence 8773
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=3.6e-12 Score=114.66 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=159.6
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....|+|+|+|+++++...++.|++||..++... .......... ++| +++++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~------------------~~~~~~~~~~-ia~-------~~~g~~ 184 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT------------------TVHPGFKGGK-PAV-------TKDKQR 184 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE------------------EEEETCCBCB-CEE-------CTTSSE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE------------------EeeccCCCCc-eeE-------ecCCCc
Confidence 35789999999998888888899999999865321 0111112223 666 778988
Q ss_pred EEEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 141 l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
|+++..++ .|.+++...+.....+..... .....+.+++++|+ +.++++..++.|+.||...... .......
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~-- 259 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLE-- 259 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EEEEECC--
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EEEeccc--
Confidence 88888766 788888877654333311000 01125678999994 5555544678899999875421 1110000
Q ss_pred CCCCCcc--eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---------------cCeEEEEEccCCCEE
Q 014125 218 KEGQAGI--MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------------GGVTHVQFSRDGNYL 280 (430)
Q Consensus 218 ~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l 280 (430)
..+.... ...++|+|+++.++++-..++.|+.|+.... ...+.++. .....++++|+|. |
T Consensus 260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-l 336 (409)
T 3hrp_A 260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-F 336 (409)
T ss_dssp CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-E
T ss_pred ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-E
Confidence 0111111 2389999976778888888899999997643 22222221 3478999999998 6
Q ss_pred EEEec-CCCeEEEEeCCCCceEEEEeecc--c---------CCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 281 YTGGR-KDPYILCWDLRKAVQVVYKLYRS--S---------EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 281 ~~~~~-~d~~i~i~d~~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
+++.. .++.|+.|++.++. ........ . ..-.....++++++|.++++-..+++|+.+++
T Consensus 337 yvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 66665 68899999976653 22121110 0 01245789999999888888888888988875
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=2.8e-12 Score=115.36 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=152.5
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCC--eEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK--SVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~--~i~v~d~~~~~~~~~ 209 (430)
+++++++++++...++.|++||+.++.......... ... ++|++++..|+++ .++ .|.+++...... ..
T Consensus 137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~ 208 (409)
T 3hrp_A 137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PT 208 (409)
T ss_dssp EECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EE
T ss_pred EEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eE
Confidence 337889888888888999999998887665544321 333 8999999988855 434 788888764321 11
Q ss_pred ccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE----eeccccCe--EEEEEccCCCEEEEE
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----LHGQEGGV--THVQFSRDGNYLYTG 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----~~~~~~~i--~~~~~~~~~~~l~~~ 283 (430)
...... ......+.+++++|+++.+++ +..++.|+.||..++..... ..++...- ..++|+|++..|+.+
T Consensus 209 ~~g~~~---~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLG---STFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECC---TTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred Eeeecc---chhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 110000 112345678999995554444 66788999999987653322 22222222 399999976666666
Q ss_pred ecCCCeEEEEeCCCCceEEEEeecc--c---------CCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCCeecccc
Q 014125 284 GRKDPYILCWDLRKAVQVVYKLYRS--S---------EHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 284 ~~~d~~i~i~d~~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 351 (430)
...++.|+.|+....... ..... . ..-.....++++|+|+++++-. .+++|+.|++.+++. ..+.
T Consensus 285 d~~~~~I~~~~~~g~~~~--~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECEW--FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp ETTTTEEEEECTTCCEEE--EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE
T ss_pred eCCCCEEEEEecCCCEEE--EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe
Confidence 657899999998754211 11110 0 0124578899999999888877 889999999877764 3333
Q ss_pred cc---------------cCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 352 AA---------------ADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 352 ~~---------------~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
++ -....+++++|++.++++-..+++|+.
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 32 235789999999888777765554443
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=8.4e-12 Score=108.54 Aligned_cols=245 Identities=12% Similarity=0.137 Sum_probs=155.6
Q ss_pred CceeEEEECcCCceEEE-------ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCc
Q 014125 61 NFLKGIKWSPDGSSFLT-------SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s-------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (430)
....+++|+++|+++++ +..++.|.+||..+++.... .. .....+...+..+++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~------------~~~~~~~~~~~~i~~------ 78 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK------------PEVNGYGGIPAGCQC------ 78 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-EC------------CEETTEECCEEEEEE------
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee------------cccCCCCCCCceEEE------
Confidence 34679999999988887 67788999999876543100 00 000012245677777
Q ss_pred cCCC-CceEEEEeCCCcEEEEeccCCceeee-eecccccccccceEEEEECCCCcEEEEEc-C---------------Ce
Q 014125 134 SDPT-SCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAGY-N---------------KS 195 (430)
Q Consensus 134 ~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------~~ 195 (430)
+++ ++++++.. .+.|.+||.. ++.... ...... .....+.++++++++.++++.. + +.
T Consensus 79 -~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 -DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp -CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred -ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCC-ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 667 66555544 4469999988 665432 221111 1122578999999998887663 3 45
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEc----CCCCceEEEecCCCeEEEEEcC-Cce-----eeEEeeccc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS----PTHTGMLAIGSYSQTSAIYRED-NME-----LLYVLHGQE 265 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~v~~~d~~-~~~-----~~~~~~~~~ 265 (430)
|..|+.. +. .... ..+......++++ |++..++++...++.|.+||.. +++ ....+..+.
T Consensus 155 l~~~~~~--g~-~~~~-------~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 155 IYCFTTD--GQ-MIQV-------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp EEEECTT--SC-EEEE-------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred EEEECCC--CC-EEEe-------ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 6666543 11 1111 0112236788999 8544556666778999999976 343 222333333
Q ss_pred -cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCC
Q 014125 266 -GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQT 343 (430)
Q Consensus 266 -~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~ 343 (430)
..+..++++++|..+++.. .++.|.+||..++.... .. ..+...+.+++++|+|+.| ++...++.|..|++..
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~-~~~~i~~~d~~~g~~~~-~~---~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANW-GSSHIEVFGPDGGQPKM-RI---RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEE-TTTEEEEECTTCBSCSE-EE---ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceEECCCCCEEEEEc-CCCEEEEEcCCCCcEeE-EE---eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5578899999998777776 78899999987543322 11 2234678999999999955 4555668899999874
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.56 E-value=8.8e-13 Score=127.36 Aligned_cols=248 Identities=10% Similarity=0.085 Sum_probs=158.8
Q ss_pred ccCCCceeEEEECcCCceEEE-----ecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeecccc
Q 014125 57 SIPNNFLKGIKWSPDGSSFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (430)
Q Consensus 57 ~~h~~~v~~~~~sp~~~~l~s-----~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (430)
.+|...+..++|||||++||. |+....|++||+.+++.... .. .......++|
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~-~~~k~~~~~W---- 182 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------------PL-KDVKFSGISW---- 182 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------------EE-EEEESCCCEE----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------------cc-CCceeccEEE----
Confidence 456667899999999999984 33346799999998753110 00 0011346677
Q ss_pred CccCCCCceEEEEeCCCc-------------EEEEeccCCce--eeeeecccccccccceEEEEECCCCcEEEE-Ec---
Q 014125 132 SASDPTSCVFASTTRDHP-------------IHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY--- 192 (430)
Q Consensus 132 ~~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--- 192 (430)
+ |++.|+.++.+.. |++|++.++.. ...+.... .+.....++.|+|||++|+. ..
T Consensus 183 ---s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 183 ---L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP--AQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp ---E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG--GGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ---e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC--CCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 8 8888888887743 99999887653 22222211 01124668899999998873 22
Q ss_pred -CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC---CeEEEEEcCCcee--eEEeecccc
Q 014125 193 -NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL--LYVLHGQEG 266 (430)
Q Consensus 193 -d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~v~~~d~~~~~~--~~~~~~~~~ 266 (430)
.+.|+++|+..+......+ ..+....... ++++++.+++....+ +.|..+|+.++.. ...+..|..
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l-------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTV-------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEE-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCcEEEEEECCCCCCceEEE-------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 2589999997654322221 1122223333 556566666666554 6799999987654 345555666
Q ss_pred CeEEEEEccCCCEEEEEecCCC--eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC----CcEEEEE
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD----GLVHIYD 340 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd 340 (430)
.+. .|+++++.|+.....++ .|++||+...... .+. ......+..+.++|++..|+....+ +.|+.||
T Consensus 329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l~--~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EVA--LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EEC--CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Eee--cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 555 89999998888774555 6889998754221 221 1234556777888888766655444 7899999
Q ss_pred cCCCCe
Q 014125 341 LQTGKW 346 (430)
Q Consensus 341 ~~~~~~ 346 (430)
+.+++.
T Consensus 403 ~~~g~~ 408 (693)
T 3iuj_A 403 PKSGAI 408 (693)
T ss_dssp TTTCCE
T ss_pred CCCCeE
Confidence 987753
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.56 E-value=4.2e-12 Score=109.93 Aligned_cols=232 Identities=12% Similarity=0.097 Sum_probs=150.9
Q ss_pred CeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 120 ESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
.......| +++++ ++++...++.|..|+. +++. ..+..... .+..++++++|+++++. .++.|.
T Consensus 45 ~~~egp~~-------~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~-----~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 45 TWSEGPAW-------WEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA-----FTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp SSEEEEEE-------EGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS-----CEEEEEECTTSCEEEEETTTTEEE
T ss_pred cCccCCeE-------eCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC-----ccceeeECCCCCEEEEECCCCEEE
Confidence 34556777 56777 6677778899999998 4543 33333322 67899999999987776 457899
Q ss_pred EEEcCCCCCcccccccccCCCCC-CCcceEEEEEcCCCCceEEE----ecC-------------CCeEEEEEcCCceeeE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAI----GSY-------------SQTSAIYREDNMELLY 259 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~v~~~d~~~~~~~~ 259 (430)
+|+.. + . ...... ...+ ....+..++++| +++++++ |.. .+.|..||..+++...
T Consensus 111 ~~~~~-g-~-~~~~~~---~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 111 RSDAD-G-Q-AHLLVG---RYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EECTT-S-C-EEEEEC---EETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EECCC-C-C-EEEEEe---ccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 99875 2 1 111111 0111 123467799999 5567775 432 3568888876666543
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCC------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKD------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.. .......++|+|+++.|+++. .. +.|.+|++............ .........++++++|++.+ ++.+
T Consensus 184 ~~--~~~~p~gl~~spdg~~lyv~~-~~~~~~~~~~i~~~~~~~~~l~~~~~~~-~~~~~~pdgi~~d~~G~lwv-~~~~ 258 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQTLYVSQ-TPEQGHGSVEITAFAWRDGALHDRRHFA-SVPDGLPDGFCVDRGGWLWS-SSGT 258 (305)
T ss_dssp EE--EESSEEEEEECTTSSEEEEEE-CCC---CCCEEEEEEEETTEEEEEEEEE-CCSSSCCCSEEECTTSCEEE-CCSS
T ss_pred Ee--cCCCCcceEEcCCCCEEEEEe-cCCcCCCCCEEEEEEecCCCccCCeEEE-ECCCCCCCeEEECCCCCEEE-ecCC
Confidence 33 345678899999999888887 44 78999998765311111111 11233445688999999544 4444
Q ss_pred CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 334 GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
| |.+|+. +++.+..+..+. .+.+++|.|+++.|..++.++.+++
T Consensus 259 g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 259 G-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp E-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred c-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4 999998 577777776554 5899999999988887776554443
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=2.4e-13 Score=119.43 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=132.4
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccc-ccccccC-CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE-KYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
.+..+++++...+++++....+.+|++........ ....... ....+.. |+.++| ++..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEEc
Confidence 67889999999999977666888898753210000 0000110 1123445 999999 44577777 8899999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
++.........|..++.++.+.+. .++++. .||.|.+||+.+.... . +...|++++|||+| ++.|..
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~-~dG~L~v~dl~~~~~~--~------~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILN-SVNDLSALDLRTKSTK--Q------LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEE-TTSEEEEEETTTCCEE--E------EEESEEEEEECSSE--EEEEET
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEE-CCCCEEEEEccCCccc--c------ccCCceEEEEcCCc--eEEEEc
Confidence 877665566667778888887654 377777 8999999999976532 1 34579999999999 678999
Q ss_pred CCcEEEEEcCCCCe--eccc------c---cccCCeeEEEEcCCCcEEEEee
Q 014125 333 DGLVHIYDLQTGKW--ISGF------Q---AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 333 dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
||.+++|+...++. ..++ . +|...|.+|.|.+++.++++-.
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999887764 4444 2 3677899999999999888744
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.54 E-value=1.9e-11 Score=106.69 Aligned_cols=229 Identities=12% Similarity=0.030 Sum_probs=149.4
Q ss_pred eeeeeeccccCccCCC-CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEE
Q 014125 122 VYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFD 200 (430)
Q Consensus 122 v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d 200 (430)
....+| +|+ +.++++...++.|..||..+++.. .+... ..+.++++++++++++++. ..|.+||
T Consensus 51 ~egp~~-------~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------~~v~~i~~~~dg~l~v~~~-~gl~~~d 115 (326)
T 2ghs_A 51 GEGPTF-------DPASGTAWWFNILERELHELHLASGRKT-VHALP------FMGSALAKISDSKQLIASD-DGLFLRD 115 (326)
T ss_dssp EEEEEE-------ETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS------SCEEEEEEEETTEEEEEET-TEEEEEE
T ss_pred CcCCeE-------eCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC------CcceEEEEeCCCeEEEEEC-CCEEEEE
Confidence 345667 444 456667777889999999887543 23221 2688999999999888764 4599999
Q ss_pred cCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
...+.. ..+.... .......+..++++|+ ++++++... .+.|..++ +++... +..+......++|+
T Consensus 116 ~~~g~~--~~~~~~~--~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 116 TATGVL--TLHAELE--SDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFS 187 (326)
T ss_dssp TTTCCE--EEEECSS--TTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEEC
T ss_pred CCCCcE--EEEeeCC--CCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEc
Confidence 865321 1111110 0112246889999995 455554432 25666666 454332 32334457899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCC--CC-ceE-EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 275 RDGNYLYTGGRKDPYILCWDLR--KA-VQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~--~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
|+++.|+.+...++.|.+||+. ++ ... ...+.........+..++++++|.+.++...++.|.+||. +++.+..+
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence 9999887776467899999986 43 210 0111111223345678999999988777666788999998 57777777
Q ss_pred ccccCCeeEEEEc-CCCcEEEEeeC
Q 014125 351 QAAADTVNGFSFH-PFLPMAASSSG 374 (430)
Q Consensus 351 ~~~~~~v~~~~~~-~~~~~l~s~~~ 374 (430)
..+...+++++|. |++..|..++.
T Consensus 267 ~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ECCCCCcEEEEEecCCCCEEEEEec
Confidence 7666679999998 88876655543
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=7.3e-11 Score=101.73 Aligned_cols=236 Identities=8% Similarity=-0.005 Sum_probs=162.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v 198 (430)
..+.++++ ++++.++++...++.|.+||.. ++... +.... ....+.++++++++.++++. .++.|..
T Consensus 20 ~~p~~i~~-------d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 20 SGPYGITS-------SEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---PDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---TTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCcceeeE-------CCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---CCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 45667777 7788888877778999999987 55433 22221 12367899999999888776 4688999
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeE-EeeccccCeEEEEEccCC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 277 (430)
||.. +.. ... . .......+..+++.+ ++.++++...++.|..+|.. ++... .+......+..++++++|
T Consensus 88 ~d~~-g~~--~~~---~--~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 88 LSKK-GGF--TEY---P--LPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN 157 (300)
T ss_dssp ECTT-SCE--EEE---E--CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS
T ss_pred ECCC-CCe--EEe---c--CCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC
Confidence 9876 211 111 1 111224588999998 56677777778899999987 54432 233234578999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecc-cccccCC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISG-FQAAADT 356 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~ 356 (430)
+..++.. .++.|..||. ++.... . ........+..++++++|.+.++....+.|.+||. +++.... +..+...
T Consensus 158 ~l~v~~~-~~~~i~~~~~-~g~~~~--~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 158 ALWFTEN-QNNSIGRITN-TGKLEE--Y-PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNAR 231 (300)
T ss_dssp SEEEEET-TTTEEEEECT-TCCEEE--E-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CEEEEec-CCCeEEEECC-CCcEEE--e-eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCC
Confidence 8555544 6789999998 433222 1 11234456889999999988777777788999998 5554332 3334557
Q ss_pred eeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 357 VNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 357 v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+.+++++++|.+.++...++.|..++.
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ceEEEECCCCCEEEeccCCCeEEEECC
Confidence 899999999997777766677777764
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=7.2e-11 Score=101.67 Aligned_cols=232 Identities=9% Similarity=0.023 Sum_probs=150.4
Q ss_pred CCCceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 59 PNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 59 h~~~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+...--+..|+|+ +.++++...++.|..||..++.. ........+.++++ +++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------------------~~~~~~~~~~~i~~-------~~d 64 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------------------QRVTMDAPVSSVAL-------RQS 64 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------EEEECSSCEEEEEE-------BTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------------------EEEeCCCceEEEEE-------CCC
Confidence 3344668999995 55667777789999999876532 11122356788888 668
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cC---------CeEEEEEcCCCCCc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN---------KSVRVFDVHRPGRD 207 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d---------~~i~v~d~~~~~~~ 207 (430)
++++++ . ++.|.+||..+++.......... .....+..++++|+|+++++. .. ..-.+|.+...+..
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 141 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV 141 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence 885554 4 45699999988765443332211 112357889999999977754 21 33456666543221
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCcee-----eEEeeccccCeEEEEEccCCCEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMEL-----LYVLHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l 280 (430)
.. . .........++|+|++..++++.+.++.|.+|++ .++.. ...+..+.+....++++++|.+.
T Consensus 142 ~~----~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 142 KK----Y----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp EE----E----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred EE----E----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 11 0 1112346789999966667777788899999987 34432 22333344567899999999866
Q ss_pred EEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEEEcc
Q 014125 281 YTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQ 332 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 332 (430)
++.. .++.|..||..+++... .+ ..+...+++++|. |+++.|+.++.
T Consensus 214 va~~-~~~~v~~~d~~tG~~~~-~i---~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 214 VACY-NGGRVIRLDPVTGKRLQ-TV---KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEE-TTTEEEEECTTTCCEEE-EE---ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEc-CCCEEEEEcCCCceEEE-EE---ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 6666 78899999998664332 22 2334678999998 88776655543
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.50 E-value=2.4e-12 Score=112.78 Aligned_cols=268 Identities=9% Similarity=-0.064 Sum_probs=170.0
Q ss_pred eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe----------CCCcEEE
Q 014125 83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT----------RDHPIHL 152 (430)
Q Consensus 83 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~v 152 (430)
+|.++|..+++....+ ..+. .+ .+.+ +||++.++++. .++.|.+
T Consensus 47 ~vsvID~~t~~v~~~i----------------~vG~-~P--~i~~-------spDg~~lyVan~~~~r~~~G~~~~~Vsv 100 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHS----------------LGAF-LS--LAVA-------GHSGSDFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp EEEEEETTTTEEEEEE----------------EECT-TC--EEEE-------CTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred eEEEEECCCCeEEEEE----------------eCCC-CC--ceEE-------CCCCCEEEEEcccccccccCCCCCEEEE
Confidence 7889999877543221 1111 12 3555 88999999886 4788999
Q ss_pred EeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEE-c--CCeEEE--EEcCCCCCcccccccccCCCCCCCcce
Q 014125 153 WDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG-Y--NKSVRV--FDVHRPGRDFEKYSTLKGNKEGQAGIM 225 (430)
Q Consensus 153 wd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~--d~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~v 225 (430)
||+.+++.+..+....... .......+.++|||++++++ . +..|.+ +|+.+ .. .+.. .+
T Consensus 101 iD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~---~i~v--~~----- 166 (368)
T 1mda_H 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQ---LTKS--AS----- 166 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EE---EEEC--SS-----
T ss_pred EECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ce---EEEC--CC-----
Confidence 9999999999887541100 00134579999999998865 2 467888 88754 11 1100 00
Q ss_pred EEEEEcCCCCceEEEecCCCeEEEEEcCC-----ceeeE----EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN-----MELLY----VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
+..+.|++...+++.+.||.+.+.|+.+ ++... .+.....+. . ++++..++..+ . +.|.+.|+.
T Consensus 167 -~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~ 239 (368)
T 1mda_H 167 -CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIP 239 (368)
T ss_dssp -CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECC
T ss_pred -ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECC
Confidence 0123454666777778899988889886 44331 111112333 3 66777777777 6 999999987
Q ss_pred CCceEEEEeecccC--------CccceEEEEEcCCCCEEEEEcc-C--------CcEEEEEcCCCCeecccccccCCeeE
Q 014125 297 KAVQVVYKLYRSSE--------HTNQRILFDIEPSGRHLGTGGQ-D--------GLVHIYDLQTGKWISGFQAAADTVNG 359 (430)
Q Consensus 297 ~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~~~~~~~v~~ 359 (430)
.............. .......++++|+++.++.+.. + +.+.++|+.+++.+..+.... ...+
T Consensus 240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~g 318 (368)
T 1mda_H 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDA 318 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECE
T ss_pred CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-Ccce
Confidence 54322211111000 0111112679999988876543 2 356699999999999887554 6899
Q ss_pred EEEcCCCcEE-EEeeCCceeeecCCCccccccCCCcEEEEeecccccccccCCCCc
Q 014125 360 FSFHPFLPMA-ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENADGING 414 (430)
Q Consensus 360 ~~~~~~~~~l-~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 414 (430)
++|+|+++.+ ++.. ..++.|.++|....+.+..+.....
T Consensus 319 i~~s~Dg~~l~va~~----------------~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 319 IIAAQDGASDNYANS----------------AGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEECCSSSCEEEEEE----------------TTTTEEEEEESSSCEEEEECCCCSC
T ss_pred EEECCCCCEEEEEcc----------------CCCCeEEEEECCCCcEEEEEECCCC
Confidence 9999999854 4443 1367888888888888777764433
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=4e-11 Score=106.83 Aligned_cols=250 Identities=13% Similarity=0.109 Sum_probs=153.0
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.++|||++|+.+. .++.|.++|..+.+....+.. ...... ...-.|....+
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v----------------~g~~r~-~~g~~P~~~~~ 184 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL----------------PDAPRF-LVGTYQWMNAL 184 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE----------------TTCCCC-CBSCCGGGSEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC----------------CCcccc-ccCCCcceEEE
Confidence 799999999888876 367899999987754322211 000000 00012444455
Q ss_pred CCCCceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCC-c-EEEEEcCCeEEEEEcCCCCCcccc
Q 014125 135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-T-KIFAGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+|||++++++.. ++.|.+.|+.+++.+..+..... ....|++ . +++.+.||.+.+.+... +.....
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---------~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~ 254 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---------YHIFPASPTVFYMNCRDGSLARVDFAD-GETKVT 254 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---------EEEEEEETTEEEEEETTSSEEEEECCT-TCCEEE
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---------eeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEE
Confidence 999999998874 57899999999998888775321 1222322 2 22344666666666622 111100
Q ss_pred cccccCCCCCCCcc-eEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeec----------cccCeEEEEEccCC
Q 014125 211 YSTLKGNKEGQAGI-MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHG----------QEGGVTHVQFSRDG 277 (430)
Q Consensus 211 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~ 277 (430)
.. ..+.....+ ...+.+.+++..+++ ....+.|.+.|+...... ..+.. .......++++|++
T Consensus 255 ~~---~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 255 NT---EVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp EC---CCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred ee---eeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 00 000000111 123467885554444 456789999998754321 11110 11222347899999
Q ss_pred CEEEEEecC---------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCC-EEEEEc-cCCcEEEEEcCCCCe
Q 014125 278 NYLYTGGRK---------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGR-HLGTGG-QDGLVHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~ 346 (430)
+.+++.... ++.|.++|+.+.+... .+. -......+.|+|+|+ ++++.. .++.|.|+|+.+++.
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~-~I~----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN-KIE----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEE-EEE----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 988887511 3579999999885443 321 122477899999998 888887 589999999999999
Q ss_pred eccc
Q 014125 347 ISGF 350 (430)
Q Consensus 347 ~~~~ 350 (430)
+.++
T Consensus 406 v~tI 409 (426)
T 3c75_H 406 LRSV 409 (426)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=6.3e-13 Score=116.75 Aligned_cols=181 Identities=9% Similarity=-0.007 Sum_probs=125.6
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee-----eeecccccccccceEEEEECCCCcEEEEEcCCe
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 195 (430)
.+..+++ ++...++++|+.++ +.+|++....... .+.......... |+.++| ++.+|+++.++.
T Consensus 39 ~~nlLai-------s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~ 107 (388)
T 1xip_A 39 SLQNLDI-------SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNA 107 (388)
T ss_dssp CCBCEEE-------ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSE
T ss_pred cccEEEE-------cCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCc
Confidence 5677777 66788999999987 6679876433100 011100112223 889999 889999779999
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
|++||++...... . ...+...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|+|
T Consensus 108 l~v~dv~sl~~~~-~-------~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 108 LYSLDLEELSEFR-T-------VTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp EEEEESSSTTCEE-E-------EEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred EEEEEchhhhccC-c-------cceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 9999997643211 1 1233345777777652 28888999999999999776543 456899999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceE-EEEee------cccCCccceEEEEEcCCCCEEEEE
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQV-VYKLY------RSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
+| ++++. .||.+++|+....... ...+. ...+|...|.++.|.+++.++++=
T Consensus 173 kG--~~vg~-~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 173 SQ--LAVLL-KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SE--EEEEE-TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred Cc--eEEEE-cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99 66777 8999999988776421 22221 111367889999999999888763
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=2.2e-10 Score=99.99 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=142.2
Q ss_pred ceeEEEECcC-CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
...+..|+|+ +.++++...++.|.+||..++... .......+.+++| ++++++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------------~~~~~~~v~~i~~-------~~dg~l 103 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-------------------VHALPFMGSALAK-------ISDSKQ 103 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------------EEECSSCEEEEEE-------EETTEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------------EEECCCcceEEEE-------eCCCeE
Confidence 3567899997 456667777889999998765210 1112346888888 567877
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC-------CeEEEEEcCCCCCccccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~v~d~~~~~~~~~~~~~ 213 (430)
+++. .++ |.+||..+++.......... .....+..++++|+|+++++..+ +.|..++ . +. ...
T Consensus 104 ~v~~-~~g-l~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~-~~~--- 173 (326)
T 2ghs_A 104 LIAS-DDG-LFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GK-VTK--- 173 (326)
T ss_dssp EEEE-TTE-EEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TE-EEE---
T ss_pred EEEE-CCC-EEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-Cc-EEE---
Confidence 6654 444 99999988875433222111 11236789999999997775431 3455554 2 21 111
Q ss_pred ccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Cc-ee-----eEEeeccccCeEEEEEccCCCEEEEEec
Q 014125 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NM-EL-----LYVLHGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
+. ........++|+|++..++++.+.++.|.+||+. ++ .. ...+.........++++++|.+.++..
T Consensus 174 ~~----~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~- 248 (326)
T 2ghs_A 174 LF----ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW- 248 (326)
T ss_dssp EE----EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-
T ss_pred ee----CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-
Confidence 10 1112467899999665566666778999999986 55 31 222222335578899999998776665
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEc-CCCCEEEEEcc
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQ 332 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 332 (430)
.++.|..||.. +.. ...+ ..+...+.+++|+ |+++.|+.++.
T Consensus 249 ~~~~v~~~d~~-g~~-~~~i---~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 249 GEGAVDRYDTD-GNH-IARY---EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TTTEEEEECTT-CCE-EEEE---ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCEEEEECCC-CCE-EEEE---ECCCCCcEEEEEecCCCCEEEEEec
Confidence 67899999984 322 2222 2334568999998 88877655543
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=5.2e-11 Score=104.82 Aligned_cols=268 Identities=8% Similarity=-0.000 Sum_probs=163.0
Q ss_pred eeeeeeeccccCccCCCCceEEEEeC--CCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEE-c---
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y--- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~--- 192 (430)
....+++ +++|+++++... ++.++||.+.+++. ..+... ....+...+..++++++++++++. .
T Consensus 18 ~p~~va~-------~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 18 APGNITL-------TPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp CEEEEEE-------CTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred CcceEEE-------CCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence 4556666 788998888642 34356666555543 222211 111234478899999999877765 2
Q ss_pred --CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec---CCCeEEEEEcCCceeeEEeeccc--
Q 014125 193 --NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMELLYVLHGQE-- 265 (430)
Q Consensus 193 --d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~~~~~~~~~~-- 265 (430)
++.|.+||+.++.. ...+ .+......+...+..++++|+++..+++.. .++.|.+||+.+++....+..|.
T Consensus 90 ~~~~~i~~~d~~tg~~-~~~~-~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~ 167 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQL-SRVI-YLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI 167 (343)
T ss_dssp TSCCEEEEEETTTTEE-EEEE-ECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred CCCCeEEEEECCCCeE-EEEE-ECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence 57999999876421 1111 111111123345688999985566666665 67899999998877655543321
Q ss_pred ---------------------------cCeEEEEEccCCCEEEEEecCCCeEEEEeCC---CCc----eEEEEeecccCC
Q 014125 266 ---------------------------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR---KAV----QVVYKLYRSSEH 311 (430)
Q Consensus 266 ---------------------------~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~---~~~----~~~~~~~~~~~~ 311 (430)
..+..|+|+|+|+.|+++......+..++.. ... .....+ ...++
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 246 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI-ERYSE 246 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC-EEEEE
T ss_pred cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce-Eeccc
Confidence 2358899999999999888333456555532 110 000000 00012
Q ss_pred ccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc-ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCcccccc
Q 014125 312 TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA-AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSG 390 (430)
Q Consensus 312 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~ 390 (430)
......++++++|.++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..+.+.++.... --
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~~~---~~ 323 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGE---NI 323 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBTTC---CC
T ss_pred CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccccCC---Cc
Confidence 22445689999999999999999999999855654322221 244689999999999888887666555543220 01
Q ss_pred CCCcEEEEeecc
Q 014125 391 DENCVSVWSFLY 402 (430)
Q Consensus 391 ~d~~i~~w~~~~ 402 (430)
.+...+||.+..
T Consensus 324 ~~~~~~i~~~~~ 335 (343)
T 2qe8_A 324 SAPPYYIFRLKP 335 (343)
T ss_dssp CCSCEEEEEECC
T ss_pred CcCCeEEEEEEC
Confidence 223357776653
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=2.1e-11 Score=117.73 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=148.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEE-----eCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (430)
..+..++| ||||++||.+ +....|++||+.+++.+.... ... ....++|+ |++.|+ +..+
T Consensus 129 ~~l~~~~~-------SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~-----k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 129 TALDQLSF-------SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDV-----KFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp CEEEEEEE-------CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEE-----ESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEEE-------CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCc-----eeccEEEe-CCCEEEEEEec
Confidence 36777788 8899988843 233579999999998654311 110 13478999 998887 5555
Q ss_pred C-------------eEEEEEcCCCCCcccccccccCCCCC-CCcceEEEEEcCCCCceEEEecC---CCeEEEEEcCCce
Q 014125 194 K-------------SVRVFDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNME 256 (430)
Q Consensus 194 ~-------------~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~ 256 (430)
. .|++|++.++......+ ..... +...+..+.|+|++..++++... ...|+++|+.++.
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v----~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLV----FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEE----ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEE----EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 3 49999987643211111 11122 33457789999966655555442 3589999998763
Q ss_pred -eeEEeeccccCeEEEEEccCCCEEEEEecCC---CeEEEEeCCCCceE-EEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 257 -LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQV-VYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 257 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
....+..+....... |+++|..|+..+..+ +.|..+|+.++... ...+ ..+...+. .|++++++|+...
T Consensus 271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL---IPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---ECCCSSCE--EEEEETTEEEEEE
T ss_pred CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE---ecCCCCEE--EEEEECCEEEEEE
Confidence 344555555555554 677777766655243 68999999876430 1122 12333343 8889998877666
Q ss_pred cCC---cEEEEEcCCCCeecccc-cccCCeeEEEEcCCCcEEEEeeCC----ceeeecCC
Q 014125 332 QDG---LVHIYDLQTGKWISGFQ-AAADTVNGFSFHPFLPMAASSSGH----RRFPVDDF 383 (430)
Q Consensus 332 ~dg---~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----~~~~vw~~ 383 (430)
.++ .|++|++..+. ...+. ...+.+..+.++|++..|+....+ +.+..++.
T Consensus 345 ~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 543 68999988543 34433 234567788888888866655443 66777654
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=3e-10 Score=98.17 Aligned_cols=236 Identities=11% Similarity=0.099 Sum_probs=143.9
Q ss_pred cccCCCceeEEEECcCCc-eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 56 SSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 56 ~~~h~~~v~~~~~sp~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
+...........|+|+|+ ++++...++.|..|+.. +.. .........+..+++
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------~~~~~~~~~~~gl~~------- 93 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------DVLLDATAFTNGNAV------- 93 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------EEEEESCSCEEEEEE-------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------EEEeCCCCccceeeE-------
Confidence 344455678899999998 66777788999999874 311 111123345777777
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE----Ec--------------CCeE
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GY--------------NKSV 196 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~--------------d~~i 196 (430)
+++|+++++...++.|.+|+.. ++.......... .....+..++++|+|.++++ +. .+.|
T Consensus 94 d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 94 DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 7789877666666789999986 553322221111 11224678999999998875 21 2456
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceee--EEe-eccccC
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELL--YVL-HGQEGG 267 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~--~~~-~~~~~~ 267 (430)
..+|...+.. .... .......++|+|++ ..|+++... +.|.+|++...... ..+ ....+.
T Consensus 172 ~~~d~~~g~~--~~~~--------~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 240 (305)
T 3dr2_A 172 YRLPPDGSPL--QRMA--------DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL 240 (305)
T ss_dssp EEECSSSCCC--EEEE--------EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred EEEcCCCCcE--EEEe--------cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence 6666543211 1110 12346789999954 445554443 78999998754411 111 112344
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
...++++++|+ |.+++ .+ .|.+|+.... . ...+.. . ..+..++|+|+++.|+.++.++ ++.++
T Consensus 241 pdgi~~d~~G~-lwv~~-~~-gv~~~~~~g~-~-~~~~~~---~-~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 241 PDGFCVDRGGW-LWSSS-GT-GVCVFDSDGQ-L-LGHIPT---P-GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CCSEEECTTSC-EEECC-SS-EEEEECTTSC-E-EEEEEC---S-SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCeEEECCCCC-EEEec-CC-cEEEECCCCC-E-EEEEEC---C-CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 56789999998 55554 44 4999998543 2 222221 1 2477899999998888877764 44333
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=1.1e-10 Score=102.21 Aligned_cols=259 Identities=9% Similarity=-0.024 Sum_probs=151.1
Q ss_pred EEEECcCCceEEEec----------CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+.++|||++|+++. .++.|.+||+.+.+....+.... ....+ .--.|....+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~---------------~~~~~--~g~~P~~ia~ 131 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD---------------APRFS--VGPRVHIIGN 131 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT---------------SCSCC--BSCCTTSEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC---------------ccccc--cCCCcceEEE
Confidence 799999999998886 36889999999875543322110 00000 0012444555
Q ss_pred CCCCceEEEEeC--CCcEEE--EeccCCceeeeeecccccccccceEEEEECCCCc--EEEEEcCCeEEEEEcCCCCCc-
Q 014125 135 DPTSCVFASTTR--DHPIHL--WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRD- 207 (430)
Q Consensus 135 ~~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~d~~i~v~d~~~~~~~- 207 (430)
+|||++++++.. +..+.+ +|+.+ +..+.... . +.+.|++. +++.+.|+.+.+.++......
T Consensus 132 SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~------~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 132 CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS------C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS------C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC------c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 999999999875 356888 99877 34443211 1 11224442 333446777777787651110
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeec----------cccCeEEEEEcc
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHG----------QEGGVTHVQFSR 275 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~----------~~~~i~~~~~~~ 275 (430)
.+..........-...+. . .++++.++ ..+. +.|.+.|..+.. .+..+.. .......++++|
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 000000000011112233 3 55455444 4444 999999986532 2222211 111222378999
Q ss_pred CCCEEEEEec-C-------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCE-EEEEc-cCCcEEEEEcCCCC
Q 014125 276 DGNYLYTGGR-K-------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRH-LGTGG-QDGLVHIYDLQTGK 345 (430)
Q Consensus 276 ~~~~l~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-~dg~i~vwd~~~~~ 345 (430)
+++.++++.. . ++.+.++|+.+.+... .+. -......++|+|+|++ +++.. .++.|.++|+.+++
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-~i~----vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-CCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-EEE----CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 9999998762 1 2356699999875432 221 1225778999999974 55555 58999999999999
Q ss_pred eecccccccCCeeEEEEcC
Q 014125 346 WISGFQAAADTVNGFSFHP 364 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~ 364 (430)
.+..+.... ...++++.+
T Consensus 349 vv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 349 DQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEECCCCS-CCCEEECCC
T ss_pred EEEEEECCC-CCCEEEeec
Confidence 999887554 345666654
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=8.1e-10 Score=106.04 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=169.0
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-+|..+++..-........ ...........-..+. -.+..+++++.|+.|.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~g~v~v~~~dg~l~ 134 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDR------HRAGEACCDAVNRGVA---------VWKGKVYVGVLDGRLE 134 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCG------GGGGGCTTCSCCCCCE---------EETTEEEEECTTSEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCc------cccccccccCCCCccE---------EECCEEEEEccCCEEE
Confidence 556777788889999999988764333211100 0000000000000011 1355788899999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCCcccccccccCCC-------
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKYSTLKGNK------- 218 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~------- 218 (430)
.+|..+|+.+..+...........+.+--.-.++..++.+ .++.|+.||..++...+..........
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 214 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG 214 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence 9999999998877653110000011100000155555532 268899999988655443221100000
Q ss_pred --------C--------CCCcceEEEEEcCCCCceEEEecCCCe-------------------EEEEEcCCceeeEEeec
Q 014125 219 --------E--------GQAGIMSAIAFSPTHTGMLAIGSYSQT-------------------SAIYREDNMELLYVLHG 263 (430)
Q Consensus 219 --------~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------v~~~d~~~~~~~~~~~~ 263 (430)
. +.......++++| ...++++++.++. |..+|.++++.+..++.
T Consensus 215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~ 293 (689)
T 1yiq_A 215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT 293 (689)
T ss_dssp HHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec
Confidence 0 1111123578888 5567888887764 99999999999887764
Q ss_pred --cc-------cCeEEEEEccCCC---EEEEEecCCCeEEEEeCCCCceEEEEeeccc----------------------
Q 014125 264 --QE-------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRSS---------------------- 309 (430)
Q Consensus 264 --~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------------- 309 (430)
|. .+........+|+ .++.++ .+|.++++|.++++..........
T Consensus 294 ~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~ 372 (689)
T 1yiq_A 294 TPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY 372 (689)
T ss_dssp STTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred CCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence 21 1122222223554 677777 899999999999865432211100
Q ss_pred --CCcc-----------ceEEEEEcCCCCEEEEEcc--------------------------------------------
Q 014125 310 --EHTN-----------QRILFDIEPSGRHLGTGGQ-------------------------------------------- 332 (430)
Q Consensus 310 --~~~~-----------~v~~~~~~~~~~~l~~~~~-------------------------------------------- 332 (430)
.... .-..++++|+..++++...
T Consensus 373 ~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 452 (689)
T 1yiq_A 373 WKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS 452 (689)
T ss_dssp TTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred cCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence 0000 0112688888777776532
Q ss_pred -CCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 333 -DGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 333 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
+|.|+.||+.+++.+..++.+. ++..-.+...+.+++.++.|+.+++||.
T Consensus 453 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 453 WSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 3779999999999988877543 3344455667778888877666666654
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=3.2e-09 Score=94.75 Aligned_cols=272 Identities=7% Similarity=0.035 Sum_probs=155.9
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee-eeeeeccccCccCCCCceEEEEeCCCc
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSASDPTSCVFASTTRDHP 149 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (430)
++..|++++.++.|..+|..+++..-........ . ........+ ..+. .++..++.++.++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~----~----~~~~~~~~~~~~~~---------~~~~~v~v~~~~g~ 114 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKD----G----WFSKEPALLSGGVT---------VSGGHVYIGSEKAQ 114 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCSCCCCCEEEEEE---------EETTEEEEEETTSE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccc----c----cccccCcccccCce---------EeCCEEEEEcCCCE
Confidence 3567888888999999999887654322211000 0 000000111 1111 13557888889999
Q ss_pred EEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEE
Q 014125 150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAI 228 (430)
Q Consensus 150 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 228 (430)
|..+|..+|+.+.......... ..... .++..++.+.++.|..+|..++...+........ ...... ..
T Consensus 115 l~a~d~~tG~~~W~~~~~~~~~-----~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~ 184 (376)
T 3q7m_A 115 VYALNTSDGTVAWQTKVAGEAL-----SRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES----AP 184 (376)
T ss_dssp EEEEETTTCCEEEEEECSSCCC-----SCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC----CC
T ss_pred EEEEECCCCCEEEEEeCCCceE-----cCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC----Cc
Confidence 9999999999887766543211 11112 2455555568899999998775433322110000 000001 11
Q ss_pred EEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccC----eE---EEEEcc--CCCEEEEEecCCCeEEEEeCCCCc
Q 014125 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG----VT---HVQFSR--DGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 229 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----i~---~~~~~~--~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
... ...++++..++.|..+|..+++.+......... +. .+.-.| .+..+++++ .++.+..+|..+++
T Consensus 185 ~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 185 TTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRSGQ 260 (376)
T ss_dssp EEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTTCC
T ss_pred EEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCCCc
Confidence 121 236778888999999999999887766522110 00 011111 345677777 89999999999886
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
...... ......+.. ++..|+.++.++.|..+|..+++.+...... ...+..... .+..|+.++.+|.+
T Consensus 261 ~~w~~~------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 261 IMWKRE------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYL 330 (376)
T ss_dssp EEEEEC------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEE
T ss_pred EEeecc------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeE
Confidence 543221 112333433 3667888888999999999999987665421 222222222 24566667666666
Q ss_pred eecCC
Q 014125 379 PVDDF 383 (430)
Q Consensus 379 ~vw~~ 383 (430)
.++|.
T Consensus 331 ~~~d~ 335 (376)
T 3q7m_A 331 HWINV 335 (376)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 66654
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.30 E-value=1.1e-08 Score=86.45 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=138.3
Q ss_pred eeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEE
Q 014125 121 SVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR 197 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~ 197 (430)
....++| ++++ .++++-...+.|..+++..+......... ......+++++++..|+ +. ..+.|.
T Consensus 37 ~~~gi~~-------d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~p~~ia~d~~~~~lyv~d~~~~~I~ 104 (267)
T 1npe_A 37 VIIGLAF-------DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGRTIFWTDSQLDRIE 104 (267)
T ss_dssp EEEEEEE-------ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-----CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEE-------ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-----CCCccEEEEEecCCeEEEEECCCCEEE
Confidence 4567777 5544 44555556789999998766543332211 12567899999766665 44 568899
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--CCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
+++++.... .. +. .........++++|+++.++++... .+.|..+++..................++++|
T Consensus 105 ~~~~~g~~~--~~---~~---~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~ 176 (267)
T 1npe_A 105 VAKMDGTQR--RV---LF---DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176 (267)
T ss_dssp EEETTSCSC--EE---EE---CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred EEEcCCCCE--EE---EE---ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence 999864211 11 11 1111346899999965655555543 47888888764332212222234578999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++..|+.+....+.|..+|....... .... .......++.. .+.++++....+.|.++|..+++.+..+.....
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~---~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~ 250 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPAQPGRR--KVLE---GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ 250 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTEEEEE--EEEE---CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred CCCEEEEEECCCCEEEEEecCCCceE--EEec---CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence 98888888767789999999754221 1211 12233456654 344444444568999999999998887764432
Q ss_pred -CeeEEEEcCCCc
Q 014125 356 -TVNGFSFHPFLP 367 (430)
Q Consensus 356 -~v~~~~~~~~~~ 367 (430)
...++++.|++.
T Consensus 251 ~~p~gi~~~~~~~ 263 (267)
T 1npe_A 251 TRLYGITIALSQC 263 (267)
T ss_dssp CCCCCEEEECSCC
T ss_pred cccceeeecCccC
Confidence 467888888653
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.30 E-value=3.9e-09 Score=93.00 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=143.2
Q ss_pred CCCceEE-EEeCCCcEEEEeccCC----ceeeeeeccccc--ccccceEEEEECCCCcEEEEE-cC------CeEEEEEc
Q 014125 136 PTSCVFA-STTRDHPIHLWDATTG----LLRCTYRAYDAV--DEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDV 201 (430)
Q Consensus 136 ~~~~~l~-~~~~dg~i~vwd~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~d------~~i~v~d~ 201 (430)
.++++|+ .+..++.|.++|+.+. +....+....-. ........+...|+| ++++. .+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 5666655 4566789999999765 444444211000 001144567888999 55532 33 68999998
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-------------------CCCeEEEEEcCCceeeEEee
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-------------------YSQTSAIYREDNMELLYVLH 262 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~dg~v~~~d~~~~~~~~~~~ 262 (430)
.+... ....... ......-..+-|+| +.+.+++.. .+.+|.+||+.+++.+.++.
T Consensus 172 ~T~~v----~~~~~~~-~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEP----LGKWEID-RGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp TTCCE----EEECCSB-CTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred CCCeE----EEEEccC-CCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 76321 1111110 11112234678899 555777663 47899999999988877776
Q ss_pred cc--ccCeEEEEE--ccCCCEEEEEec-----CCCeEEEEeCCCCceEEEEeecccC----------------CccceEE
Q 014125 263 GQ--EGGVTHVQF--SRDGNYLYTGGR-----KDPYILCWDLRKAVQVVYKLYRSSE----------------HTNQRIL 317 (430)
Q Consensus 263 ~~--~~~i~~~~~--~~~~~~l~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~----------------~~~~v~~ 317 (430)
.- ......+.| +|+++++++++. .+++|.+|....+.-.......... .......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 42 123445655 999999999985 5678888766543211111100000 0245678
Q ss_pred EEEcCCCCEEEEEcc-CCcEEEEEcCC---CCeeccccccc--------------CCeeEEEEcCCCcEEEEee
Q 014125 318 FDIEPSGRHLGTGGQ-DGLVHIYDLQT---GKWISGFQAAA--------------DTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 318 ~~~~~~~~~l~~~~~-dg~i~vwd~~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~ 373 (430)
+.+||||++|.++.. .+.|.+||+.. .+.+..+.... +....++++|+|++|.++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999887765 57899999863 23444433220 1368899999999888876
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=7.1e-10 Score=97.52 Aligned_cols=255 Identities=12% Similarity=0.058 Sum_probs=148.6
Q ss_pred CceeEEEECcCCceEEEec--CCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.....++++|+|+.+++.. .++.++||.+.+++.. .+.... .....+-..+..+++ ++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~----------~~~~~~~~~p~gv~~-------d~~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS----------GNAIITFDTVLGIKS-------DGNG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC----------SSCCCCCSCEEEEEE-------CSSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc----------cCcccceeEeeEEEE-------cCCC
Confidence 5689999999999988864 2343556655433211 110000 001123346777887 7778
Q ss_pred ceEEEEeC-----CCcEEEEeccCCceeeeeeccccc-ccccceEEEEECCCCcEEE-EE----cCCeEEEEEcCCCCCc
Q 014125 139 CVFASTTR-----DHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIF-AG----YNKSVRVFDVHRPGRD 207 (430)
Q Consensus 139 ~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~----~d~~i~v~d~~~~~~~ 207 (430)
+++++-.. ++.|.+||+.+++.+..+...... .....+..+++++++..++ +. .++.|.+||+.... .
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~ 157 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-A 157 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-E
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-E
Confidence 76666544 578999999999877776543211 1122457899998655544 43 46899999987532 1
Q ss_pred cccccc---ccC-----CCCC--------------CCcceEEEEEcCCCCceEEEecCC-CeEEEEEcC---Cc-----e
Q 014125 208 FEKYST---LKG-----NKEG--------------QAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYRED---NM-----E 256 (430)
Q Consensus 208 ~~~~~~---~~~-----~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~---~~-----~ 256 (430)
...... ... ...+ ....+..++|+|++ +.|+++... ..+..++.. .+ +
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 111100 000 0000 01236889999955 455555444 466666532 11 0
Q ss_pred eeE--EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC
Q 014125 257 LLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG 334 (430)
Q Consensus 257 ~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 334 (430)
... ...++.+....++++++|..+++.. .++.|.+||..++. .. .+.. ......+..++|.++|.++++.+..+
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~-~~-~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRA-YK-LLVT-DEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTE-EE-EEEE-CGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCC-EE-EEEE-CCceecCCeeEECCCCcEEEEeCccc
Confidence 000 1113344567899999998776666 88999999984443 21 2221 12345688999999998888877655
Q ss_pred cEEEE
Q 014125 335 LVHIY 339 (430)
Q Consensus 335 ~i~vw 339 (430)
.+.+|
T Consensus 313 ~~~~f 317 (343)
T 2qe8_A 313 HSAPL 317 (343)
T ss_dssp GSGGG
T ss_pred ccccc
Confidence 55443
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.30 E-value=5e-09 Score=92.36 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=143.2
Q ss_pred cCCceEEE-ecCCCeEEEEeCCCCCCcccccccccccccCcccc-eeeecCCCeeeeeeeccccCccCCCCceEEEEeCC
Q 014125 70 PDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147 (430)
Q Consensus 70 p~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 147 (430)
+++++|+. +..+++|.|+|+.+......+... ... .+.-.. ..+ .|+...++|+| +++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~--------ie~~~~~~~~-----g~s-~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV--------IEPEEVKKVS-----GYS-RLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE--------ECHHHHHHHH-----CEE-EEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeee--------echhhccccc-----CCC-cccceeECCCe-EEEEcCCC
Confidence 77877665 556789999999754211000000 000 000000 011 23333447888 77766555
Q ss_pred ------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc--------------------CCeEEEEEc
Q 014125 148 ------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------------NKSVRVFDV 201 (430)
Q Consensus 148 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------d~~i~v~d~ 201 (430)
|.|.++|..+.+.+..+...... ..-.+.+-|+|+++.++++. +.+|.+||+
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~--~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGD--QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTT--CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCC--ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 78999999999999888754321 11234688899999888773 789999999
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEE--cCCCCceEEEec-----CCCeEEEEEcCCcee--eEEe--ecc------
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHTGMLAIGS-----YSQTSAIYREDNMEL--LYVL--HGQ------ 264 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~-----~dg~v~~~d~~~~~~--~~~~--~~~------ 264 (430)
.+. . ....+.. .........+.| +|++...++++. .+++|.+|....++. ...+ ...
T Consensus 236 ~~~-k---~~~tI~v--g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 236 RKR-K---RIHSLTL--GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp TTT-E---EEEEEES--CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred CCC-c---EeeEEec--CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence 863 1 1111111 011223445555 996665555555 678898876654421 1111 110
Q ss_pred ----------ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc--eEEEEeecccCC------------ccceEEEEE
Q 014125 265 ----------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV--QVVYKLYRSSEH------------TNQRILFDI 320 (430)
Q Consensus 265 ----------~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~------------~~~v~~~~~ 320 (430)
......|.++|||++|+++....+.|.+||+.... .....+.. .+. ......+++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t-GG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL-GGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-BTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe-CCeeccccccccccCCCCCCEEEE
Confidence 23468899999999999999889999999986432 22222211 110 113567999
Q ss_pred cCCCCEEEEEc
Q 014125 321 EPSGRHLGTGG 331 (430)
Q Consensus 321 ~~~~~~l~~~~ 331 (430)
+|||++|+++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999887
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.29 E-value=9.4e-11 Score=106.90 Aligned_cols=244 Identities=11% Similarity=0.041 Sum_probs=159.2
Q ss_pred cCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccC-CCCceEEEEe--
Q 014125 70 PDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFASTT-- 145 (430)
Q Consensus 70 p~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~-- 145 (430)
+||++|..... ++.|.+.|+++.+.... +.+..+.....+++. + |++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i----------------i~ip~g~~phg~~~~------~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAI----------------LEIPNAKGIHGLRPQ------KWPRSNYVFCNGED 156 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEE----------------EECSSCCSEEEEEEC------CSSBCSEEEEEECS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeE----------------EeCCCCCCCcceeee------ecCCCcEEEEeccc
Confidence 38887776655 56799999987653321 122222344455541 2 5677777774
Q ss_pred ----------------CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCC--------------
Q 014125 146 ----------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-------------- 194 (430)
Q Consensus 146 ----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-------------- 194 (430)
.++.+.++|..+.+...++.... ....++++|+|++++++ .+.
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 34679999999998888877543 22367899999999854 331
Q ss_pred -eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee-eEEeeccccCeEE
Q 014125 195 -SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL-LYVLHGQEGGVTH 270 (430)
Q Consensus 195 -~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~-~~~~~~~~~~i~~ 270 (430)
.|.+.|..... .+.+++....+ +.|.+.|.++ ++. +..+.. .....+
T Consensus 231 d~v~V~~~~~~~-----------------------~~v~~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipv-g~~PhG 281 (595)
T 1fwx_A 231 DHIVVFNIAEIE-----------------------KAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPI-ANNPHG 281 (595)
T ss_dssp EEEEEEEHHHHH-----------------------HHHHHTCSEEE-----TTEEEEECSGGGCCSSEEEEEE-ESSCCC
T ss_pred ceEEEeecccee-----------------------EeccCCCeeEE-----CcEEEEeCcccCCceeEEEEec-CCCceE
Confidence 24455442200 11222322222 5599999998 544 445542 345688
Q ss_pred EEEccCCCEEEEEecCCCeEEEEeCCCCce-----------EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEE
Q 014125 271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-----------VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIY 339 (430)
Q Consensus 271 ~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 339 (430)
+.++|||+++++++..+.+|.++|+.+... .... ..-......++|+|+|...++...|+.|.+|
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~----v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE----PELGLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC----CBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE----cCCCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 999999999999988899999999985421 1111 2234567889999999545566779999999
Q ss_pred EcCC----------CCeecccccccCC-----eeEEEEcCCCcEEEEeeC
Q 014125 340 DLQT----------GKWISGFQAAADT-----VNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 340 d~~~----------~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~ 374 (430)
|+.+ .+.+..+..|-.+ -.++..+|||++|+++..
T Consensus 358 di~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 358 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9987 4556666554332 233456899999999864
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=9.2e-10 Score=105.43 Aligned_cols=295 Identities=9% Similarity=0.066 Sum_probs=172.0
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-+|..+++..-.......... ...... ......++. ++..+++++.|+.|.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~--~~~~~~----~~~~~~~a~---------~~~~v~v~~~dg~l~ 141 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRST--GFKGCC----DVVNRGVAL---------WKGKVYVGAWDGRLI 141 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGG--GGGSSS----CSCCCCCEE---------ETTEEEEECTTSEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccc--cccccc----cCCCCCceE---------ECCEEEEEcCCCEEE
Confidence 45666777788999999988865433221110000 000000 000001111 356788889999999
Q ss_pred EEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc------CCeEEEEEcCCCCCcccccccccCC--------
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEKYSTLKGN-------- 217 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~-------- 217 (430)
.+|..+|+.+..+...........+.+--...++..++++. ++.|+.+|..++...+.........
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 99999999988887641100000111111111454554332 6899999998765443321111000
Q ss_pred -------CC---------CCCcceEEEEEcCCCCceEEEecCCC-------------------eEEEEEcCCceeeEEee
Q 014125 218 -------KE---------GQAGIMSAIAFSPTHTGMLAIGSYSQ-------------------TSAIYREDNMELLYVLH 262 (430)
Q Consensus 218 -------~~---------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~v~~~d~~~~~~~~~~~ 262 (430)
.. +.......++++| ...+++++..++ .|..+|.++++.+..++
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~ 300 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence 00 1111223578888 455777776654 59999999999887766
Q ss_pred c--cc-------cCeEEEEEccCC---CEEEEEecCCCeEEEEeCCCCceEEEEeecccC-------Cccce--------
Q 014125 263 G--QE-------GGVTHVQFSRDG---NYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE-------HTNQR-------- 315 (430)
Q Consensus 263 ~--~~-------~~i~~~~~~~~~---~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~v-------- 315 (430)
. |. .....+....+| ..++.++ .+|.|+++|..+++........... ....+
T Consensus 301 ~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 379 (677)
T 1kb0_A 301 ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG 379 (677)
T ss_dssp SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred cCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence 3 21 112223334477 5677777 8999999999998654432211000 00000
Q ss_pred ----------------EEEEEcCCCCEEEEEcc-------------------------------------------CCcE
Q 014125 316 ----------------ILFDIEPSGRHLGTGGQ-------------------------------------------DGLV 336 (430)
Q Consensus 316 ----------------~~~~~~~~~~~l~~~~~-------------------------------------------dg~i 336 (430)
..++++|++.++++... .|.|
T Consensus 380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l 459 (677)
T 1kb0_A 380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL 459 (677)
T ss_dssp TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence 14688998888777543 2779
Q ss_pred EEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 337 HIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
..||+.+++.+..+. +..++.+..+...+.+++.++.|+.+++||..
T Consensus 460 ~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 460 LAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 999999999888776 33455555667778888888877777777653
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=4.7e-09 Score=100.76 Aligned_cols=278 Identities=14% Similarity=0.082 Sum_probs=163.7
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe------
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------ 145 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------ 145 (430)
+..|+.++.|+.|..+|..+++..-...... +......+...|. -.++ .++.++
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---------------~~~~~~~~~~sP~----v~~g-~v~vg~~~~~~~ 180 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---------------DHKRSYTITGAPR----VVNG-KVVIGNGGAEFG 180 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCS---------------CTTSCCBCCSCCE----EETT-EEEECCBCTTTC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcC---------------CCCCCccccCCcE----EECC-EEEEEeCCCccC
Confidence 4578888899999999999886543322110 0000011111110 0033 344443
Q ss_pred CCCcEEEEeccCCceeeeeeccccc--------------------------ccccceEEEEECCCCcEEEEE-cCC----
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAV--------------------------DEITAAFSVAFNPTGTKIFAG-YNK---- 194 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~l~~~-~d~---- 194 (430)
.+|.|..||..+|+.+..+...... ........++++|+...++.+ .++
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 3689999999999988877532100 000011257888888877755 443
Q ss_pred ---------------eEEEEEcCCCCCcccccccccCCC-CCCCcceEEEEEcCCC--CceEEEecCCCeEEEEEcCCce
Q 014125 195 ---------------SVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 195 ---------------~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~~~d~~~~~ 256 (430)
.|..+|..++...+.......... .....+........++ ...++.++.+|.++++|.++++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 499999988654443211100000 0011122222222212 2378889999999999999998
Q ss_pred eeEEeeccc----------------------------c-----------CeEEEEEccCCCEEEEEecC-----------
Q 014125 257 LLYVLHGQE----------------------------G-----------GVTHVQFSRDGNYLYTGGRK----------- 286 (430)
Q Consensus 257 ~~~~~~~~~----------------------------~-----------~i~~~~~~~~~~~l~~~~~~----------- 286 (430)
.+....... . .-..++|+|+...+++....
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 874332100 0 01137888988888776311
Q ss_pred ---------------------------------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC
Q 014125 287 ---------------------------------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 287 ---------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
+|.|+.||+.+++........ .....-.+...+.+++.|+.|
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagglvf~gt~d 495 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-----TIFNGGTLSTAGNLVFEGSAD 495 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTT
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-----CCccCccceECCCEEEEECCC
Confidence 378999999998655433221 122223445567899999999
Q ss_pred CcEEEEEcCCCCeecccccccCC-eeEEEEcCCCc-EEEEeeC
Q 014125 334 GLVHIYDLQTGKWISGFQAAADT-VNGFSFHPFLP-MAASSSG 374 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~-~l~s~~~ 374 (430)
|.++.||.++|+.+..++...+. ..-+.|..+|+ ++++.+.
T Consensus 496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 496 GRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 99999999999999888755432 24467778887 5555544
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=2.1e-09 Score=103.03 Aligned_cols=273 Identities=12% Similarity=0.034 Sum_probs=165.3
Q ss_pred CceEEEecCCCeEEEEeCCCCCCccccccc-ccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC----
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNAC-SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR---- 146 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---- 146 (430)
+..|+.++.|+.|..+|..+++..-..... .. .....+ .-.|. - .+..+++++.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-------------~~~~~~---~~~p~----v-~~~~v~v~~~~~~~ 186 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ-------------KGSLTI---TGAPR----V-FKGKVIIGNGGAEY 186 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTC-------------CSSCBC---CSCCE----E-ETTEEEECCBCTTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc-------------CcCccc---ccCcE----E-ECCEEEEEeccccc
Confidence 457888888999999999988664333221 00 000000 00010 0 1234454443
Q ss_pred --CCcEEEEeccCCceeeeeecccccc---------------------------cccceEEEEECCCCcEEEEE-cCC--
Q 014125 147 --DHPIHLWDATTGLLRCTYRAYDAVD---------------------------EITAAFSVAFNPTGTKIFAG-YNK-- 194 (430)
Q Consensus 147 --dg~i~vwd~~~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~-~d~-- 194 (430)
+|.|+.+|..+|+.+..+....... .......++++|++..++.+ .++
T Consensus 187 ~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~ 266 (677)
T 1kb0_A 187 GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP 266 (677)
T ss_dssp CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred CCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcc
Confidence 6899999999999988776533210 00112357888888888754 332
Q ss_pred -----------------eEEEEEcCCCCCcccccccccCCC-CCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEEcCC
Q 014125 195 -----------------SVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 195 -----------------~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~ 254 (430)
.|..+|..++...+.......... .........+....++. ..++.++.+|.++++|..+
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t 346 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN 346 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence 488888887654332211100000 00011122223333232 6889999999999999999
Q ss_pred ceeeEEeeccc-----------cCe------------------------EEEEEccCCCEEEEEecC-------------
Q 014125 255 MELLYVLHGQE-----------GGV------------------------THVQFSRDGNYLYTGGRK------------- 286 (430)
Q Consensus 255 ~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~l~~~~~~------------- 286 (430)
++.+..+.... .++ ..++|+|++..+++.. .
T Consensus 347 G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~-~~~~~~~~~~~~~~ 425 (677)
T 1kb0_A 347 GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA-QNVPVNLMDDKKWE 425 (677)
T ss_dssp CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE-EECCCEEEECTTCC
T ss_pred CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeC-hhcceeeecccccc
Confidence 99876654211 001 1578899988888765 2
Q ss_pred ------------------------------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 287 ------------------------------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 287 ------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.|.|..||+.+++....... ...+....+...+..++.++.||.+
T Consensus 426 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~~~g~~v~~g~~dg~l 500 (677)
T 1kb0_A 426 FNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-----VSPWNGGTLTTAGNVVFQGTADGRL 500 (677)
T ss_dssp TTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred cccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-----CCCCcCcceEeCCCEEEEECCCCcE
Confidence 17899999999865543321 2223334455678889999999999
Q ss_pred EEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEE
Q 014125 337 HIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAAS 371 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s 371 (430)
++||+.+++.+..+....+ ...-+.|.++|+.++.
T Consensus 501 ~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 501 VAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999998875432 2344566778874433
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=5.2e-12 Score=112.11 Aligned_cols=239 Identities=15% Similarity=0.047 Sum_probs=128.7
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCCccccccccc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
++..+++++.||.|+.||..+|+.+..+.. . .+.+..+..++..+++ +.|+.|+.||..++...+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 567899999999999999999999888775 2 3444445567766665 4899999999976543222110000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
... ...+ .+. .+..+++++.++.|+.||..+++.+..+..+. ...++|++..+++++ .|+.|+.||.
T Consensus 81 ~~~--~~sp----~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~ 147 (369)
T 2hz6_A 81 ELV--QASP----CRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDT 147 (369)
T ss_dssp HHH--TTCS----CC-------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCS
T ss_pred ccc--ccCc----eEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEEC
Confidence 000 0011 111 22367778889999999999999887776543 235567888888888 8999999999
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCC---CEEEEEccCCcEEEEEcCCCCeecccccccCCe-eEEEEcCCCcEEE-
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSG---RHLGTGGQDGLVHIYDLQTGKWISGFQAAADTV-NGFSFHPFLPMAA- 370 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~- 370 (430)
++++........ . .....++++. ..+++++.||.|+.||..+++.+..+.. ..++ ....+++++...+
T Consensus 148 ~tG~~~W~~~~~--~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~ 220 (369)
T 2hz6_A 148 KTRELRWNATYF--D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVM 220 (369)
T ss_dssp SSSSCCCEEEEE--E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEEC
T ss_pred CCCCEEEeEecc--c----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEecc
Confidence 987643322110 1 1122233322 4577788999999999999998877763 3344 3345566664321
Q ss_pred ---Eee--------CCce---eeecCCC-------------ccccccCCCcEEEEeecc
Q 014125 371 ---SSS--------GHRR---FPVDDFE-------------DLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 371 ---s~~--------~d~~---~~vw~~~-------------~l~~~~~d~~i~~w~~~~ 402 (430)
.++ .+|. +.+|... .++.++.||.++..+...
T Consensus 221 ~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 221 HINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHHHSEEEECBEECSSCEECCEEEE
T ss_pred ceeecccceeeeehhcCCcccceeeeeccCccccccccccceEEEecccCCEEecCccc
Confidence 111 1111 1445332 356677788888888764
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=8.5e-09 Score=91.97 Aligned_cols=265 Identities=9% Similarity=0.110 Sum_probs=151.0
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
++..++.++.++.|..+|..+++........ ..+.. .| .-.+..++.++.++.|
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------~~~~~---~p-----~~~~~~v~v~~~~g~l 155 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------GEALS---RP-----VVSDGLVLIHTSNGQL 155 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECS------------------SCCCS---CC-----EEETTEEEEECTTSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------CceEc---CC-----EEECCEEEEEcCCCeE
Confidence 3456777888999999999887543221110 01100 00 0023477888889999
Q ss_pred EEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC-------CCCCc
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK-------EGQAG 223 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~~~ 223 (430)
..+|..+|+.+..................... ++..+++..++.|..+|..++...+.......... .....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTT 234 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCC
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCC
Confidence 99999999988777654321100000111222 44444455788999999876543322111000000 00011
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~ 303 (430)
+ .. .+..+++++.++.+..+|..+++.+..... .....+.. ++..+++++ .++.|..+|..+++....
T Consensus 235 p----~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 235 P----VV---VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp C----EE---ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTTCCEEEE
T ss_pred c----EE---ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCCCcEEEe
Confidence 1 11 124677778899999999999988766542 23444444 466788888 899999999998865432
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
.. . .....+..... .+..|+.++.+|.|+++|..+++.+.........+...... .+..|+.++.+|.+..
T Consensus 303 ~~-~--~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 303 QS-D--LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp EC-T--TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEE
T ss_pred ec-c--cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEE
Confidence 21 0 11111222222 25678889999999999999999887766533333221111 1344555554444443
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.16 E-value=3.1e-09 Score=92.89 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=134.7
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
+..+..++.++.+..+|.. ++.......... .+.++...+++.+++++.++.|..+|.. +...... .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--~---- 173 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--K---- 173 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--E----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--e----
Confidence 3467778888999999988 776665554332 4556677778887777778999999986 3221111 0
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.....+.++...+ ++. +.+++ +.|..+| .+++...........+.++...++|. |++++ .++.|..+|..
T Consensus 174 --~~~~~~~~~~~d~-~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~~gl~~~~~~- 243 (330)
T 3hxj_A 174 --TNDAITSAASIGK-DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTS-LDGHLYAINPD- 243 (330)
T ss_dssp --CSSCCCSCCEECT-TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEE-TTTEEEEECTT-
T ss_pred --cCCCceeeeEEcC-CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEc-CCCeEEEECCC-
Confidence 1122345556655 343 44455 8899999 67777666665556788888888875 55566 67888888753
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
+.... ... .....+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...+++.+.+ ++.+|.
T Consensus 244 g~~~~-~~~---~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~ 316 (330)
T 3hxj_A 244 GTEKW-RFK---TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGK 316 (330)
T ss_dssp SCEEE-EEE---CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSC
T ss_pred CCEeE-Eee---CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCe
Confidence 32322 221 112222334555555 4667788888999996 6777666655555677777777776544 444444
Q ss_pred eee
Q 014125 378 FPV 380 (430)
Q Consensus 378 ~~v 380 (430)
+.+
T Consensus 317 ~~~ 319 (330)
T 3hxj_A 317 FYA 319 (330)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.11 E-value=8e-08 Score=79.55 Aligned_cols=200 Identities=9% Similarity=0.062 Sum_probs=129.4
Q ss_pred ceeEEEECcCCceEEEecC--CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 62 FLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
....+.|+||+.++++.+. ++.|++.|+.+++........ .......+++ . .+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----------------~~~fgeGi~~-------~-g~~ 77 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----------------DSYFGEGLTL-------L-NEK 77 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEE-------E-TTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC----------------CCcceEEEEE-------e-CCE
Confidence 4679999999766665553 579999999988654332211 1011112333 1 123
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
+.++.-.++.+.++|..+.+.+..+... . . . ...++++++.++.+ .++.|.++|..+.... ..+.-..
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~-~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~----~~I~Vg~ 146 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M-K---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLI----KKHNVKY 146 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-S-S---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEE----EEEECEE
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-C-C---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEE----EEEEECC
Confidence 4455556889999999999988888654 1 1 1 23344577766654 6789999998763211 1111000
Q ss_pred CC-CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc-------------cCeEEEEEccCCCEEEEEe
Q 014125 219 EG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-------------GGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 219 ~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~ 284 (430)
.+ .-..+..+.|. ++.+++....++.|.+.|..+++.+..+.... ...+.|+|+|+++.+++++
T Consensus 147 ~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 147 NGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 01 11235677777 34566666678999999999999888876321 2458999999999888887
Q ss_pred cCCCeEEEEeCCCC
Q 014125 285 RKDPYILCWDLRKA 298 (430)
Q Consensus 285 ~~d~~i~i~d~~~~ 298 (430)
...+.|...++...
T Consensus 225 k~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 225 KLWPKLFEIKLHLV 238 (266)
T ss_dssp TTCSEEEEEEEEEC
T ss_pred CCCCeEEEEEEecc
Confidence 67888888877543
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=5.5e-07 Score=75.91 Aligned_cols=233 Identities=9% Similarity=0.004 Sum_probs=137.1
Q ss_pred eEEEEeCCCcEEEEeccCCcee-----eeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+|+.+.. +.|+.+++...... ..+.... ..+..++|++++..|+ +. .++.|..+++..... .
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~--- 71 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--T--- 71 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--E---
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--E---
Confidence 4444443 46888888765321 1111111 1567899999776666 44 578999999865321 1
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC--CCeE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYI 290 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i 290 (430)
... .........++++|+++.++++-...+.|.++++..................++++|++..|+.+... .+.|
T Consensus 72 ~~~---~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 72 TII---RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp EEE---CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred EEE---ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 110 11123578999999667777777778899999987543222222222457899999987777776623 4688
Q ss_pred EEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEE-EEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEE
Q 014125 291 LCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLG-TGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMA 369 (430)
Q Consensus 291 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 369 (430)
..+++....... +. .........++++|++..|. +-...+.|.++|+........+.. .....+++.. +..|
T Consensus 149 ~~~~~dg~~~~~--~~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~l 221 (267)
T 1npe_A 149 ETSHMDGTNRRI--LA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNL 221 (267)
T ss_dssp EEEETTSCCCEE--EE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEE
T ss_pred EEEecCCCCcEE--EE--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEE
Confidence 888886543221 11 12234578899999876655 444567899999985443322222 2233455543 3333
Q ss_pred EEeeCCceeeecCCCccccccCCCcEEEEeeccccccccc
Q 014125 370 ASSSGHRRFPVDDFEDLHLSGDENCVSVWSFLYASMMENA 409 (430)
Q Consensus 370 ~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 409 (430)
..+.. ..+.|.+++...++.+..+
T Consensus 222 yva~~----------------~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 222 YYTDW----------------KTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEET----------------TTTEEEEEETTTTEEEEEE
T ss_pred EEEEC----------------CCCeEEEEeCCCCCceEEE
Confidence 33332 2456666666655554444
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=1.1e-07 Score=78.82 Aligned_cols=185 Identities=10% Similarity=0.073 Sum_probs=122.1
Q ss_pred eEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 176 AFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 176 v~~~~~~~~~~~l~~~-~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
...+.|++++.+++++ . ++.|+++|+.++... .... + ..+ .....+++. +..++++.-.++.+.++|.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-~~i~-l----~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-NIHK-M----DDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-EEEE-C----CTT-CCEEEEEEE--TTEEEEEETTCSEEEEEET
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-EEEe-c----CCC-cceEEEEEe--CCEEEEEEecCCEEEEEEC
Confidence 4689999987555554 2 589999999874321 1110 1 111 112345554 4557777778999999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc-CCccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS-EHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.+.+.+..+..... ....+++||+.++++. .++.|.++|..+.+.......... ..-..++.+.|. +|+..+...
T Consensus 94 ~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 94 RTLSNIKNFTHQMK--DGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp TTTEEEEEEECCSS--SCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CCCcEEEEEECCCC--CeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 99998888763211 1234566888888887 789999999988754432221111 111236678887 676555555
Q ss_pred cCCcEEEEEcCCCCeecccccc-------------cCCeeEEEEcCCCcEEEEee
Q 014125 332 QDGLVHIYDLQTGKWISGFQAA-------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
.++.|.+.|..+++.+..+... .....+|+|+|+++.|+.++
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 6789999999999998877532 13568999999987555544
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.06 E-value=1.5e-07 Score=81.82 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=136.8
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccc---------------cccccceEEEEECC-CCcEEEEEcCCeEEE
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---------------VDEITAAFSVAFNP-TGTKIFAGYNKSVRV 198 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~-~~~~l~~~~d~~i~v 198 (430)
++++++++++..++.|..|+..+++.. .+..... ......+..+++.+ ++.++++...+.|..
T Consensus 27 d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~ 105 (322)
T 2fp8_A 27 DSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSV 105 (322)
T ss_dssp CTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred cCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEE
Confidence 778888888888999999998765443 2221100 00112567899997 777666766666888
Q ss_pred EEcCCCCCcccccccccCCCCC-CCcceEEEEEcC-CCCceEEEecC-----------------CCeEEEEEcCCceeeE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSP-THTGMLAIGSY-----------------SQTSAIYREDNMELLY 259 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~v~~~d~~~~~~~~ 259 (430)
+|..... ...+.. ...+ .......+++.+ ++ +++++-.. ++.|..||..+++...
T Consensus 106 ~d~~~g~--~~~~~~---~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 106 VGSEGGH--ATQLAT---SVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp ECTTCEE--CEEEES---EETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred EeCCCCE--EEEecc---cCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 8765321 111110 0011 113467899998 55 45554322 3778999987665433
Q ss_pred EeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce-EEEEeecccCCccceEEEEEcCCCCEEEEEcc------
Q 014125 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ------ 332 (430)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------ 332 (430)
... .......++|+|+++.|+++....+.|..|++..... ....+.. ... ...++++++|++.++...
T Consensus 180 ~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 180 LLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred ecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcccccc
Confidence 322 2234578999999998887764678999999875311 0111111 112 677899999987666544
Q ss_pred ----CCcEEEEEcCCCCeeccccccc----CCeeEEEEcCCCcEEEEeeCCc
Q 014125 333 ----DGLVHIYDLQTGKWISGFQAAA----DTVNGFSFHPFLPMAASSSGHR 376 (430)
Q Consensus 333 ----dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~ 376 (430)
.+.|..+|.. ++.+..+.... ..++.+++ .++.+.++....+
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred cCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 4668888864 77666554332 34566666 3555555544333
No 241
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.05 E-value=1.6e-06 Score=75.99 Aligned_cols=259 Identities=11% Similarity=-0.010 Sum_probs=155.3
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+..+|.+..+++ +|+.+.. ..|+..++..... ............++|.+ .++.
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~------------------~~~~~~~~~~~~l~~d~------~~~~ 86 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEY------------------TLLLNNLENAIALDFHH------RREL 86 (349)
T ss_dssp TTSSCEEESSSCC-EEEEECB-SCEEEECTTSCCE------------------EEEECSCSCEEEEEEET------TTTE
T ss_pred CCCCcccccccCc-eeEeecc-cceEEEeCCCCee------------------EEeecCCCceEEEEEec------cccE
Confidence 4456677777754 4443333 4577777754321 11222234567888843 1344
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
++++-...+.|..+++..+.......... .....+++.+.+..|+ +. ..+.|.+.+++..... .+.
T Consensus 87 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-----~l~-- 154 (349)
T 3v64_C 87 VFWSDVTLDRILRANLNGSNVEEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-----VLL-- 154 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEE--
T ss_pred EEEEeccCCceEEEecCCCCceEEEeCCC-----CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-----EEE--
Confidence 55555567889999987765433332211 1456889988666555 44 5678999988643211 111
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.........++++|.++.++++-... +.|..+++............-.....|+++|++..|+.+....+.|..+|+.
T Consensus 155 -~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 155 -WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp -CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 11223468999999667667766666 8899998875433322222234578999999888888887677899999987
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
...... .. .........+++. .+...++-...+.|..++..+++.+..+........++++
T Consensus 234 G~~~~~-~~---~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 234 GSHRKA-VI---SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp SCSCEE-EE---CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCceEE-EE---eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 643322 11 1123455667773 4555566666788999987777766665543333444443
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.04 E-value=7.4e-07 Score=76.78 Aligned_cols=226 Identities=14% Similarity=0.088 Sum_probs=137.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcC--C-eE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN--K-SV 196 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~-~i 196 (430)
.....++| +++++++++-..++.|..||.... ....+... ..+..+++.++++++++... + .|
T Consensus 32 ~~pegia~-------~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~------~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 32 TFLENLAS-------APDGTIFVTNHEVGEIVSITPDGN-QQIHATVE------GKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTTCC-EEEEEECS------SEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEE-------CCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC------CCceeEEEcCCCcEEEEeccCCcceE
Confidence 44566677 778887777778899999998653 33333321 16778999999997776532 2 46
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-eEEee---------cccc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLH---------GQEG 266 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~---------~~~~ 266 (430)
..++...+. ....... ........++..+ ++..+++-..++.|+.+|..+++. +.... ....
T Consensus 98 ~~~d~~~g~--~~~~~~~-----~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 98 VSLVKSDGT--VETLLTL-----PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp EEEECTTSC--EEEEEEC-----TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred EEEcCCCCe--EEEEEeC-----CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 666654422 1111111 1112234455555 555556555689999999875431 21111 0112
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
....+ +|+++.|+++....+.|..|++...... ...... ......++++++|++.++....+.|.++|.. +
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence 34455 8899888888767889999998752111 011111 1234558899999887777778899999975 6
Q ss_pred Ce--ecccccccCCeeEEEEc---CCCcEEEEeeC
Q 014125 345 KW--ISGFQAAADTVNGFSFH---PFLPMAASSSG 374 (430)
Q Consensus 345 ~~--~~~~~~~~~~v~~~~~~---~~~~~l~s~~~ 374 (430)
+. +..+.......++++|. |++..|..++.
T Consensus 243 ~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 243 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 65 32344333568999998 88776666554
No 243
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.04 E-value=1.1e-06 Score=78.22 Aligned_cols=257 Identities=11% Similarity=-0.013 Sum_probs=154.3
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.-+|.+..+.+ +|+.+.. ..|+..++..... ............++|.+ .++.++
T Consensus 78 ~~~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~------------------~~~~~~~~~~~gl~~d~------~~~~ly 131 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFANR-IDIRQVLPHRSEY------------------TLLLNNLENAIALDFHH------RRELVF 131 (386)
T ss_dssp SSCEEECSSCC-EEEEECB-SCEEEECTTSCCC------------------EEEECSCSCEEEEEEET------TTTEEE
T ss_pred CCeECCccccc-eeEeecC-ccceeeccCCCcE------------------EEEecCCCccEEEEEec------CCCeEE
Confidence 34555555543 4444333 4677777764321 11222234567888843 134455
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
++-...+.|..+++..+.....+..... ....+++.+.+..|+ +. ..+.|.+.+++.... .. +. .
T Consensus 132 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--~~---l~---~ 198 (386)
T 3v65_B 132 WSDVTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KV---LL---W 198 (386)
T ss_dssp EEETTTTEEEEEETTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--EE---EE---C
T ss_pred EEeCCCCcEEEEecCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--EE---ee---c
Confidence 5556678899999877654333322111 445788887666655 44 567788887754211 11 10 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~ 298 (430)
........++++|.++.++++-... +.|..+++............-.....|+|+|++..|+.+....+.|..+|+...
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 1224578999999666666665555 789999987543333333233457899999988888888767789999998764
Q ss_pred ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 299 VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 299 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
.... .. .........+++ ..+.++++-...+.|..++..+++.+..+........+|++
T Consensus 279 ~~~~-~~---~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 279 HRKA-VI---SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp SCEE-EE---CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeEE-EE---ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 3322 11 122345567777 34555666667788999997778776666544344455544
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.03 E-value=5.1e-06 Score=81.68 Aligned_cols=287 Identities=8% Similarity=0.051 Sum_probs=172.3
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...|.++...++|.+.+....+| +.+||..+++......... .. .......|.++.. .++|.
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~-------~~---~~l~~~~i~~i~~-------d~~g~ 275 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPS-------NP---KSISSNYIRSLAM-------DSQNR 275 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTT-------CT---TSCSCSBEEEEEE-------CTTSC
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCC-------Cc---cccCCCeEEEEEE-------cCCCC
Confidence 45688888888887655433344 8888876543211000000 00 0011246888876 55666
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
+.+ |+.+| |.+|+..+++......... ..-....|.++...++|.+.+++.++-|..|+..... +.........
T Consensus 276 lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~ 351 (795)
T 4a2l_A 276 LWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYK 351 (795)
T ss_dssp EEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTS
T ss_pred EEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCC
Confidence 544 44555 8999987775443322111 0011237899999999998888887889999865421 1111111101
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec--------cccCeEEEEEccCCCEEEEEecCCCe
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--------QEGGVTHVQFSRDGNYLYTGGRKDPY 289 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~~d~~ 289 (430)
..-....|.++...+ .+ .|.+|+.++-|..|+..+++....... ....|.++...++|..|.+++ .++-
T Consensus 352 ~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~~~G 428 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-HAGG 428 (795)
T ss_dssp SSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-TTTE
T ss_pred CCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-CcCc
Confidence 111235688998877 33 466688888899999877654332211 135689999988888566676 6778
Q ss_pred EEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc------cccCCeeEEEEc
Q 014125 290 ILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ------AAADTVNGFSFH 363 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~ 363 (430)
|..||..++................|.++...++|.+.+.. .+ -+.+||..+++...... .....|.++...
T Consensus 429 l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 429 LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 99999887643221110111234578899988888765544 44 48899988765432221 123568999999
Q ss_pred CCCcEEEEee
Q 014125 364 PFLPMAASSS 373 (430)
Q Consensus 364 ~~~~~l~s~~ 373 (430)
++|.+.+...
T Consensus 507 ~~g~lWigt~ 516 (795)
T 4a2l_A 507 SHKRLWIGGE 516 (795)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 9888776554
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=6e-10 Score=98.86 Aligned_cols=256 Identities=11% Similarity=0.049 Sum_probs=132.4
Q ss_pred CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcE
Q 014125 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (430)
Q Consensus 71 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (430)
++..+++++.||.|+.||..+++....... ..+.+..+ ..++..+++++.||.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------~~~~s~p~-------~~~g~~~v~~s~dg~l 61 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------DPVLQVPT-------HVEEPAFLPDPNDGSL 61 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------CCSCCCC------------CCEEECTTTCCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------CCceecce-------EcCCCEEEEeCCCCEE
Confidence 567899999999999999988854322111 12222211 3467788888999999
Q ss_pred EEEeccCCceeeeeecccccccccceE-EEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEE
Q 014125 151 HLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (430)
Q Consensus 151 ~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (430)
+.||..+|+.+..+...... .+. +..+..++..++++.++.|+.||..++...+.. ..+. ...
T Consensus 62 ~a~d~~tG~~~w~~~~~~~~----~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~--------~~~~----~~~ 125 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFTIPE----LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTL--------SSAF----ADS 125 (369)
T ss_dssp EEC-----CCSEECSCCHHH----HHTTCSCC-----CCCCEEEEEEEEECCC---------------------------
T ss_pred EEEECCCCceeeeeeccCcc----ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEe--------cCCC----ccc
Confidence 99999998876665433210 000 111112344444568899999999875433221 1111 134
Q ss_pred EcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC---CEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG---NYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 230 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
++| .+..+++++.++.|+.||.++++.+..+..+. ....+++++. ..+++++ .||.|+.||.++++......
T Consensus 126 ~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~W~~~- 200 (369)
T 2hz6_A 126 LSP-STSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVLWIQN- 200 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEEEEEE-
T ss_pred ccc-cCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEEEEec-
Confidence 456 55688888999999999999998776655322 2233344432 4577777 89999999999886543221
Q ss_pred cccCCccce-EEEEEcCCCCEE----EEEccCCcEEEEEcCCCC----eecccccccCCeeEEEEcCCCcEEEEeeCCce
Q 014125 307 RSSEHTNQR-ILFDIEPSGRHL----GTGGQDGLVHIYDLQTGK----WISGFQAAADTVNGFSFHPFLPMAASSSGHRR 377 (430)
Q Consensus 307 ~~~~~~~~v-~~~~~~~~~~~l----~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 377 (430)
...++ ....++++|... +.+ ++.++.+|..+|+ .+..+... +.+. ...-.+..|+.++.+|.
T Consensus 201 ----~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~--sp~~~~g~lyv~~~~G~ 271 (369)
T 2hz6_A 201 ----YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETE--AKSKLTPTLYVGKYSTS 271 (369)
T ss_dssp ----CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH--HHHHSEEEECBEECSSC
T ss_pred ----CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccC-cccc--ccccccceEEEecccCC
Confidence 22333 334455565432 122 3346666666665 43333211 1111 00013456666777777
Q ss_pred eeecC
Q 014125 378 FPVDD 382 (430)
Q Consensus 378 ~~vw~ 382 (430)
+...+
T Consensus 272 l~al~ 276 (369)
T 2hz6_A 272 LYASP 276 (369)
T ss_dssp EECCE
T ss_pred EEecC
Confidence 77664
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.00 E-value=3.1e-06 Score=83.23 Aligned_cols=279 Identities=11% Similarity=0.108 Sum_probs=167.2
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
|.++...++|.+.+ ++.++-+..|+..+++..... .......|.++.. .+++.+.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~----------------~~~~~~~i~~i~~-------d~~g~lwi 230 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI----------------PILGTKQIQAILQ-------QSPTRIWV 230 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC--------------------CCCEEEEEE-------EETTEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec----------------CCCCCCeeEEEEE-------cCCCCEEE
Confidence 88888888886655 555445888887655321100 0012345666665 34555444
Q ss_pred EEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc-CCCC
Q 014125 143 STTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK-GNKE 219 (430)
Q Consensus 143 ~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~ 219 (430)
++.++-+..||..+++......... ..-....|.++...++|.+.+++.+ -|.+|+..... +....... ....
T Consensus 231 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 231 -ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENGS 306 (795)
T ss_dssp -EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTTS
T ss_pred -EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCCC
Confidence 4444349999987765443222110 0011236899999999988877655 68888875421 11111000 0111
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee------ccccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
-....|.++...++ + .|.+|+.++-|..|+..+........ .....|.++...++|.. ..++ .++-|..|
T Consensus 307 l~~~~i~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt-~~~Gl~~~ 382 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQ-G-GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGT-NDGGLNLY 382 (795)
T ss_dssp CSSSCEEEEEECTT-S-CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEE-SSSCEEEE
T ss_pred CCCCcEEEEEEeCC-c-CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEE-CCCCeEEE
Confidence 23356999998873 3 46667777889999876554322111 02346899999888874 4566 67779999
Q ss_pred eCCCCceEEEEeec---c-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc----cccCCeeEEEEcCC
Q 014125 294 DLRKAVQVVYKLYR---S-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ----AAADTVNGFSFHPF 365 (430)
Q Consensus 294 d~~~~~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~ 365 (430)
|..+.......... . .-....|.++...++|+.|..|+.++-|.+||..+++...... .....|.++...++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 98765322211110 0 1124678899988888856667777779999998876433211 23457899999988
Q ss_pred CcEEEEee
Q 014125 366 LPMAASSS 373 (430)
Q Consensus 366 ~~~l~s~~ 373 (430)
+.+.+...
T Consensus 463 g~lwigt~ 470 (795)
T 4a2l_A 463 GNLWLGTL 470 (795)
T ss_dssp SCEEEEES
T ss_pred CCEEEEec
Confidence 88666554
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=4.5e-07 Score=82.97 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=140.7
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeeccccccc----------------------------------ccceEEEEECC--
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE----------------------------------ITAAFSVAFNP-- 183 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----------------------------------~~~v~~~~~~~-- 183 (430)
.|.+|+..|.++|+-+.+++.+..+........ .+.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 477889999999999999887776554321100 01122344444
Q ss_pred ---CCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEE-c-CCCCceEEEe---------------
Q 014125 184 ---TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF-S-PTHTGMLAIG--------------- 241 (430)
Q Consensus 184 ---~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~~--------------- 241 (430)
||+++... .++.|.+.|+.+.. ....+ .. ........+++ . |+++ +++++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~----~~~ii--~i-p~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMK----CDAIL--EI-PNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTE----EEEEE--EC-SSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTT
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCce----EeeEE--eC-CCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccc
Confidence 78888854 56779999997631 11111 11 11123677777 4 7444 55555
Q ss_pred ---cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCC------------------------------
Q 014125 242 ---SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP------------------------------ 288 (430)
Q Consensus 242 ---~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~------------------------------ 288 (430)
..++.+.+.|..+.+....+..-. ....++++|+|+++++++ .+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~-~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS-YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE-SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe-cCcccCcchhhccccccceEEEeeccceeEecc
Confidence 345689999999998888876432 457788999999999988 332
Q ss_pred --------eEEEEeCCC--CceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCCCC------------
Q 014125 289 --------YILCWDLRK--AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQTGK------------ 345 (430)
Q Consensus 289 --------~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~------------ 345 (430)
.|.+.|.++ .......+. -.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 355566655 221111111 112334589999999876655 57889999999653
Q ss_pred eecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 346 WISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 346 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.+..+. -......++|+|+|...++.--|+.+.+|+
T Consensus 323 v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 323 VVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp EEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred eEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 222332 224678999999994334444344444443
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=1.2e-07 Score=77.56 Aligned_cols=193 Identities=7% Similarity=0.077 Sum_probs=122.1
Q ss_pred cceeecccCCC--ceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeee
Q 014125 51 NQFRTSSIPNN--FLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (430)
Q Consensus 51 ~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (430)
+.++.+ .|.. ....+.|+ ++.++.+.+.+| .|+++|+.+++......... .----.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------~~FgeGit 93 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------RYFGEGIS 93 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------------TCCEEEEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------------ccceeEEE
Confidence 344444 4443 45889998 677777777776 89999999886543332110 00001122
Q ss_pred eccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC
Q 014125 127 WFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP 204 (430)
Q Consensus 127 ~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~ 204 (430)
. ++ .+.+....++.+.++|..+.+.+.++.... .-..++ +++..|+.+ .++.|.++|..+.
T Consensus 94 ~---------~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~------eG~glt--~dg~~L~~SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 94 D---------WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG------EGWGLT--HNDQYLIMSDGTPVLRFLDPESL 156 (262)
T ss_dssp E---------ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS------CCCCEE--ECSSCEEECCSSSEEEEECTTTC
T ss_pred E---------eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC------CceEEe--cCCCEEEEECCCCeEEEEcCCCC
Confidence 1 23 333444468899999999999999888643 223444 567777654 5778999998763
Q ss_pred CCcccccccccCCCCCCC-cceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc------------ccCeEEE
Q 014125 205 GRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------EGGVTHV 271 (430)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------~~~i~~~ 271 (430)
... ..+.-...+.. ..++.+.|. ++.+++..-.+..|.+.|.++++.+..+... ..-.+.|
T Consensus 157 ~v~----~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 157 TPV----RTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp SEE----EEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred eEE----EEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 211 11111111111 234557776 4456666667899999999999988777632 1245899
Q ss_pred EEccCCCEEEEEe
Q 014125 272 QFSRDGNYLYTGG 284 (430)
Q Consensus 272 ~~~~~~~~l~~~~ 284 (430)
+|+|+++.|++++
T Consensus 231 A~dp~~~~lfVTG 243 (262)
T 3nol_A 231 AWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 9999999999988
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=8.4e-08 Score=91.85 Aligned_cols=293 Identities=12% Similarity=0.067 Sum_probs=166.1
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEE
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (430)
+..|+.++.++.|.-+|..+++..-........ ...........-..+.. .+..++.++.|+.|.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~~~~---------~~~~v~v~~~dg~l~ 130 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAK------VKARTSCCDAVNRGVAL---------WGDKVYVGTLDGRLI 130 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCG------GGGGGCTTCSCCCCCEE---------EBTEEEEECTTSEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCc------cccccccccCCccceEE---------ECCEEEEEcCCCEEE
Confidence 456677777889999999888664332211100 00000000000001111 355788888999999
Q ss_pred EEeccCCceeeeeecccccccccceEE-EEECCCCcEEEEEc------CCeEEEEEcCCCCCcccccccccCCCC-----
Q 014125 152 LWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEKYSTLKGNKE----- 219 (430)
Q Consensus 152 vwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~----- 219 (430)
.+|..+|+.+..+....... ...+.+ ... .++..++... ++.|..+|..++...+...........
T Consensus 131 alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~ 208 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAK-PYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP 208 (668)
T ss_dssp EEETTTCCEEEEEECSCTTS-SCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred EEECCCCCEeeeeccCCCCC-cceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence 99999999988876532100 001111 011 1454444322 588999999876554432211000000
Q ss_pred ------------------CCCcceEEEEEcCCCCceEEEecCCC-------------------eEEEEEcCCceeeEEee
Q 014125 220 ------------------GQAGIMSAIAFSPTHTGMLAIGSYSQ-------------------TSAIYREDNMELLYVLH 262 (430)
Q Consensus 220 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~v~~~d~~~~~~~~~~~ 262 (430)
+.......++++| ...++++++.++ .|..+|.++++.+..++
T Consensus 209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 0111223468888 455777777666 49999999999888776
Q ss_pred c--cc-------cCeEEEEEccCCC---EEEEEecCCCeEEEEeCCCCceEEEEeecc-------c-CCccc--------
Q 014125 263 G--QE-------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRS-------S-EHTNQ-------- 314 (430)
Q Consensus 263 ~--~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~-~~~~~-------- 314 (430)
. |. .+.....+..+|+ .++.++ .+|.++++|..+++......... . ....+
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 4 22 2222233334665 577777 89999999999886542211100 0 00000
Q ss_pred ----------------eEEEEEcCCCCEEEEE------------------------------------ccCCcEEEEEcC
Q 014125 315 ----------------RILFDIEPSGRHLGTG------------------------------------GQDGLVHIYDLQ 342 (430)
Q Consensus 315 ----------------v~~~~~~~~~~~l~~~------------------------------------~~dg~i~vwd~~ 342 (430)
-..++++|+...++.. ..+|.|..||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 0125677776655431 134789999999
Q ss_pred CCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 343 TGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 343 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+++.+.....+ .+.....+...+.+++.++.|+.++++|..
T Consensus 447 tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 447 KQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp TTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 99988777643 334444455567888888888888887653
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=4.2e-08 Score=85.66 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=130.4
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.+..++.++.|..|| .+++.......... .+.++...+++.+++++.+ |..+|. .+ ... ... .
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~-----~~~~~~~~~~g~l~v~t~~--l~~~d~-~g-~~~---~~~----~ 94 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEI-----IECRPSIGKDGTIYFGSDK--VYAINP-DG-TEK---WRF----D 94 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGE-----EEECCEETTTTEECCSSCE--EEEECC-CG-GGG---GGS----C
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCC-----cccceEEecCCcEEEecCc--EEEECC-CC-cEE---EEE----E
Confidence 566777888899999 88877655443222 4567777777765554433 777775 21 111 111 0
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCc
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV 299 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~ 299 (430)
..........+. ...+.+++.++.|..+|.. ++...........+.++...+++. +++++ .++.|..+|.. +.
T Consensus 95 ~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt-~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 95 TKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS-NDNYLYAINPD-GT 167 (330)
T ss_dssp C-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTSEEEEECTT-SC
T ss_pred CCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc-CCCEEEEECCC-CC
Confidence 111111222222 3367778889999999998 776666665555667777777776 55566 78999999998 54
Q ss_pred eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 300 QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
...... .....+.++...+++.+.+ ++ +.|..+| .+++.+..+......+.++...+++.+.+. +.++.+.
T Consensus 168 ~~~~~~----~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~gl~ 238 (330)
T 3hxj_A 168 EKWRFK----TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGHLY 238 (330)
T ss_dssp EEEEEE----CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTEEE
T ss_pred EeEEEe----cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCeEE
Confidence 332221 2233455667777777554 44 7799999 777777666655567888888888765554 4444444
Q ss_pred ec
Q 014125 380 VD 381 (430)
Q Consensus 380 vw 381 (430)
.+
T Consensus 239 ~~ 240 (330)
T 3hxj_A 239 AI 240 (330)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=1.1e-06 Score=84.28 Aligned_cols=305 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC-----
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----- 146 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----- 146 (430)
+..++.++.|+.|..+|..+++..-....... .....+.-.|. - .+..++++..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----------------~~~~~~~~~P~----v-~~~~v~vg~~~~~~~ 175 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP----------------AKPYSITGAPR----V-VKGKVIIGNGGAEYG 175 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCT----------------TSSCBCCSCCE----E-ETTEEEECCBCTTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCC----------------CCcceecCCCE----E-ECCEEEEeCCCCCcC
Confidence 45677888899999999998865433221100 00000000010 0 1224444433
Q ss_pred -CCcEEEEeccCCceeeeeecccccc--------------------------cccceEEEEECCCCcEEEEE-cCC----
Q 014125 147 -DHPIHLWDATTGLLRCTYRAYDAVD--------------------------EITAAFSVAFNPTGTKIFAG-YNK---- 194 (430)
Q Consensus 147 -dg~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~~-~d~---- 194 (430)
+|.|..+|..+|+.+..+....... .......++++|+...++.+ .++
T Consensus 176 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 176 VRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN 255 (668)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccc
Confidence 5889999999999988876421100 00011246888877777754 343
Q ss_pred ---------------eEEEEEcCCCCCcccccccccCCC-CCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEEcCCce
Q 014125 195 ---------------SVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDNME 256 (430)
Q Consensus 195 ---------------~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~ 256 (430)
.|..+|..++...+.......... .....+.....+..++. ..++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 488888887654433211100000 00112222222222222 368899999999999999998
Q ss_pred eeEEeeccc------------cC------------------------eEEEEEccCCCEEEEEe----------------
Q 014125 257 LLYVLHGQE------------GG------------------------VTHVQFSRDGNYLYTGG---------------- 284 (430)
Q Consensus 257 ~~~~~~~~~------------~~------------------------i~~~~~~~~~~~l~~~~---------------- 284 (430)
.+....... .+ -..++++|+...+++..
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 874432111 00 01267788777666521
Q ss_pred -------------------cCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCC
Q 014125 285 -------------------RKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 285 -------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
..+|.|..||+.+++........ .......+...+.++++++.||.+++||.++++
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-----CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 02378999999998655433221 112222334457889999999999999999999
Q ss_pred eecccccccCCe-eEEEEcCCCc-EEEEeeC-CceeeecCC--CccccccCCCcEEEEeecc
Q 014125 346 WISGFQAAADTV-NGFSFHPFLP-MAASSSG-HRRFPVDDF--EDLHLSGDENCVSVWSFLY 402 (430)
Q Consensus 346 ~~~~~~~~~~~v-~~~~~~~~~~-~l~s~~~-d~~~~vw~~--~~l~~~~~d~~i~~w~~~~ 402 (430)
.+..++...+.. .-+.+..+|+ +++.++. ++..-.+-. ....-.+..+.|.++.+..
T Consensus 491 ~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 552 (668)
T 1kv9_A 491 ALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG 552 (668)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred hheEecCCCCcccCceEEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence 998887543211 2344445666 5555553 332222110 1112223456777776643
No 252
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.93 E-value=9.8e-06 Score=69.99 Aligned_cols=209 Identities=12% Similarity=0.017 Sum_probs=126.2
Q ss_pred CeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccC----CceeeeeecccccccccceEEEEECCCCcEEE-EE-c
Q 014125 120 ESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~ 192 (430)
.....++| ++.+ .++++-...+.|..+++.. ......+... ...+..+++++.+..|+ +. .
T Consensus 30 ~~p~g~~~-------d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~~p~glavd~~~~~ly~~d~~ 97 (316)
T 1ijq_A 30 RNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSV 97 (316)
T ss_dssp SSEEEEEE-------ETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-----CSCCCEEEEETTTTEEEEEETT
T ss_pred CceEEEEE-------EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-----CCCcCEEEEeecCCeEEEEECC
Confidence 45677888 4444 4555556678899999876 2222222111 11456888987665555 44 6
Q ss_pred CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEE
Q 014125 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHV 271 (430)
Q Consensus 193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~ 271 (430)
.+.|.++++.... ... +. .........++++|.++.++++.... +.|..+++............-.....+
T Consensus 98 ~~~I~~~~~~g~~--~~~---~~---~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 98 LGTVSVADTKGVK--RKT---LF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (316)
T ss_dssp TTEEEEEETTSSS--EEE---EE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred CCEEEEEeCCCCc--eEE---EE---ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence 7889999886421 111 11 11123568999999666666665443 789988886433222222223457899
Q ss_pred EEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 272 ~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+++|++..|+.+....+.|..+|+....... +............+++. .+.++++-...+.|..++..+++.+..+.
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~--~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEE--EEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEeccCCEEEEEECCCCeEEEEecCCCceEE--EeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 9999888888887677899999997543322 11111223345667775 35566666677889999988887666554
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.92 E-value=1.1e-06 Score=82.34 Aligned_cols=273 Identities=14% Similarity=0.090 Sum_probs=152.6
Q ss_pred CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeC-----
Q 014125 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----- 146 (430)
Q Consensus 72 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----- 146 (430)
+..++.++.|+.+..+|..+++..-....... . .... +.-.|. - .+..+++++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-------~------~~~~---~~~~P~----v-~~g~v~vg~~~~~~~ 173 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP-------K------VGST---LTQAPF----V-AKDTVLMGCSGAELG 173 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCG-------G------GTCB---CCSCCE----E-ETTEEEEECBCGGGT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC-------C------ccce---eccCCE----E-ECCEEEEEecCCccC
Confidence 44677778889999999988765432211100 0 0000 000110 0 1234555544
Q ss_pred -CCcEEEEeccCCceeeeeeccccccc--------------------------------cc-ceEEEEECCCCcEEEEEc
Q 014125 147 -DHPIHLWDATTGLLRCTYRAYDAVDE--------------------------------IT-AAFSVAFNPTGTKIFAGY 192 (430)
Q Consensus 147 -dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------------~~-~v~~~~~~~~~~~l~~~~ 192 (430)
++.|..+|..+|+.+..+........ .. ....+++.++...++.+.
T Consensus 174 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~ 253 (571)
T 2ad6_A 174 VRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS 253 (571)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC
Confidence 78999999999998887765322100 00 002356666655665432
Q ss_pred -C----------------CeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEE
Q 014125 193 -N----------------KSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYR 251 (430)
Q Consensus 193 -d----------------~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d 251 (430)
+ +.|..+|..++...+........ .......++. +...+++. .+++.++.+|.++++|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 1 35888888875443322111000 0001122222 22223232 4677889999999999
Q ss_pred cCCceeeEEeeccc-------------cCe--------------------------EEEEEccCCCEEEEEec-------
Q 014125 252 EDNMELLYVLHGQE-------------GGV--------------------------THVQFSRDGNYLYTGGR------- 285 (430)
Q Consensus 252 ~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~~------- 285 (430)
..+++.+....... .++ ..++++|+...+++...
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 99998876654211 111 24678888777777641
Q ss_pred -----------------------------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 286 -----------------------------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 286 -----------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
.+|.|..||+.+++........ ..+....+...+..++.++.||.|
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-----~~~~~~~~~t~gg~v~~g~~dg~l 487 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-----FAAWGGTLYTKGGLVWYATLDGYL 487 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-----SCCCSBCEEETTTEEEEECTTSEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-----CCccceeEEECCCEEEEEcCCCeE
Confidence 2478999999988655433221 111111222245677889999999
Q ss_pred EEEEcCCCCeecccccccCC-eeEEEEcCCCcEEEE
Q 014125 337 HIYDLQTGKWISGFQAAADT-VNGFSFHPFLPMAAS 371 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s 371 (430)
+.+|.++++.+..++..... -.-+.+..+|+.++.
T Consensus 488 ~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 488 KALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 99999999999888744321 122345567764443
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=4.5e-07 Score=74.11 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=117.3
Q ss_pred eEEEEECCCCcEEE-EEcCC--eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEc
Q 014125 176 AFSVAFNPTGTKIF-AGYNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (430)
Q Consensus 176 v~~~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~ 252 (430)
...+.|+ ++.++. +|.+| .|+++|+.++.... .. .+ .....-..+++. +..+++..-.++.+.+||.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~-~~-~l-----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ-QI-EL-----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE-EE-EC-----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE-EE-ec-----CCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 4578888 565444 45555 89999998753211 11 11 111111234443 4556666667999999999
Q ss_pred CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCC-ccceEEEEEcCCCCEEEEEc
Q 014125 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEH-TNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 253 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 331 (430)
.+.+.+.++.... ....++++++.|+.+. .++.|.++|..+............+. -..++.+.|. +|+..+..-
T Consensus 115 ~t~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 115 RNLRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp TTCCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ccCcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 9999998887432 2233345788888877 68899999999875443222111111 1334557776 676665555
Q ss_pred cCCcEEEEEcCCCCeecccccc------------cCCeeEEEEcCCCcEEEEee
Q 014125 332 QDGLVHIYDLQTGKWISGFQAA------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 332 ~dg~i~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
.++.|.+.|..+++.+..+... ....++|+|+|+++.|...+
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6889999999999987766431 13568999999887666655
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=1.1e-05 Score=69.39 Aligned_cols=237 Identities=12% Similarity=0.087 Sum_probs=136.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....++|+|+|+++++-..++.|..||...... ...........+++ ++++++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-------------------~~~~~~~~p~gia~-------~~dG~l 85 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHATVEGKVSGLAF-------TSNGDL 85 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEECSSEEEEEEE-------CTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-------------------EEEeCCCCceeEEE-------cCCCcE
Confidence 4577899999999777777889999998764210 11112235666777 778886
Q ss_pred EEEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccc-cccccC
Q 014125 141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK-YSTLKG 216 (430)
Q Consensus 141 l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~ 216 (430)
+++..... .|..++..+++.......... .....++..+++..+++. .++.|.++|.......... ......
T Consensus 86 ~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~----~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 86 VATGWNADSIPVVSLVKSDGTVETLLTLPDA----IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTC----SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EEEeccCCcceEEEEcCCCCeEEEEEeCCCc----cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 66554332 466677777765433332111 123345555555555555 5788888887542100000 000000
Q ss_pred -CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC-cee--eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 217 -NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 217 -~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
...........+ +|+++.++++-...+.|..|++.. ++. ...+. .......++++++|++.++.. ..+.|.+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~-~~~~V~~ 237 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH-IYNSVVR 237 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB-TTCCEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeC-CCCeEEE
Confidence 001111234445 775666777777889999999874 321 11121 113457789999997655544 6789999
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEc---CCCCEEEEEccCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIE---PSGRHLGTGGQDG 334 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg 334 (430)
+|.. +... ............++++|. |+++.|+.++..+
T Consensus 238 ~~~~-G~~~--~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 238 IAPD-RSTT--IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECTT-CCEE--EEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCC-CCEE--EEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9975 3221 111112223567899998 8877776665543
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.87 E-value=8.8e-07 Score=84.96 Aligned_cols=275 Identities=12% Similarity=0.050 Sum_probs=147.3
Q ss_pred EEEECc-CCceEEEecCCC-----------eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 65 GIKWSP-DGSSFLTSSEDK-----------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 65 ~~~~sp-~~~~l~s~~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
++++.| +++.++.|+.+. .+.+||..++..... ......+.....++++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--------------~~~~~~~~~~~~~~~~----- 250 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--------------TVTVTKHDMFCPGISM----- 250 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--------------EEEECSCCCSSCEEEE-----
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC--------------cccCCCCCCccccccC-----
Confidence 566677 888888887643 588899887643211 0010111111112333
Q ss_pred ccCCCCceEEEEeC-CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cC-----CeEEEEEcCCC
Q 014125 133 ASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YN-----KSVRVFDVHRP 204 (430)
Q Consensus 133 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d-----~~i~v~d~~~~ 204 (430)
..++.+++.|+. +..+.+||..+++....-.... ...-.+++..+++++++.| .+ ..+.+||..+.
T Consensus 251 --~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 251 --DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp --CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred --CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc----cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 457888998884 4589999998876544322111 1122355666788888854 23 57899998763
Q ss_pred CCcccccccc---cCCCCCCCcceEEEEEcCCCCceEEEecCC---------CeEEEEEcCCceeeEEeecccc------
Q 014125 205 GRDFEKYSTL---KGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------QTSAIYREDNMELLYVLHGQEG------ 266 (430)
Q Consensus 205 ~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~~~~~~~------ 266 (430)
. +...... ......+. ..+.. ++.+++.|+.+ ..+..||..+.........+..
T Consensus 325 ~--W~~~~~~~~~p~~~~~~~-----~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 T--WTSLPNAKVNPMLTADKQ-----GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp E--EEEETTSCSGGGCCCCTT-----GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred c--ceeCCCcccccccccccc-----ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 2 2111000 00000000 11222 34455555444 4567888877653332222211
Q ss_pred ---CeEEEEEcc-CCCEEEEEecCCC-----------eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc
Q 014125 267 ---GVTHVQFSR-DGNYLYTGGRKDP-----------YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 267 ---~i~~~~~~~-~~~~l~~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
.-.++.|.. +++.++.|+ .++ .|.+||..+..-.... .........-.++...|++++++.|+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECC-BSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCceEeccCCCCeEEEEeC-CCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECC
Confidence 234455543 566666665 432 6788888765432211 00111122223456678999999998
Q ss_pred cC-----------CcEEEEEcCCCCeec--ccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 332 QD-----------GLVHIYDLQTGKWIS--GFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 332 ~d-----------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
.+ ..+.+||..+.+... .+...........+.|++++++.|+.
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 64 468999988765422 22211112234556799999999885
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.86 E-value=1.2e-06 Score=76.13 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=138.7
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccc---cCcccceeeecCCCeeeeeeeccccCccCC-C
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD---QDSYEASLVVTEGESVYDFCWFPHMSASDP-T 137 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~ 137 (430)
...+++|+++|+++.++..++.|..|+..++.... +........ ..................+++ .+ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~-------~~~~ 91 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISY-------NLQN 91 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE-------ETTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEE-------cCCC
Confidence 35678999999988888889999999887543210 000000000 000000000000123556666 54 4
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC-CCcEEEEEc------------------CCeEEE
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGY------------------NKSVRV 198 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------------d~~i~v 198 (430)
++ |+.+...+.|..+|..++... .+..............+++.+ +|.+.++.. ++.|..
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 54 444544445888887655432 221111001112467899999 898777642 256777
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccC
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~ 276 (430)
||..... ... ... .......++++|++..++++-...+.|.+|++.... ....+....+ ...++++++
T Consensus 170 ~d~~~~~--~~~---~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 170 YDPSTKE--TTL---LLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239 (322)
T ss_dssp EETTTTE--EEE---EEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred EeCCCCE--EEE---ecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence 7765421 110 000 012245689999554455665677899999987521 1111111223 788999999
Q ss_pred CCEEEEEecC----------CCeEEEEeCCCCceEEEEeecccCC-ccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 277 GNYLYTGGRK----------DPYILCWDLRKAVQVVYKLYRSSEH-TNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 277 ~~~l~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
|.+.++.. . .+.|..+|... .....+....+. ...+..+++ .++++.++....+.|.++++..
T Consensus 240 G~l~va~~-~~~~~~~~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSS-EELDGNMHGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEE-EETTSSTTSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEec-CcccccccCCCccEEEEECCCC--CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 98666554 3 46688888653 232233221111 234556665 3566666666778899998764
No 258
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.86 E-value=2.1e-05 Score=70.24 Aligned_cols=248 Identities=11% Similarity=0.026 Sum_probs=145.7
Q ss_pred eEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEE
Q 014125 74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153 (430)
Q Consensus 74 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 153 (430)
+|+.+.. ..|+..++..... .........+..++|.+. ++.++.+-...+.|+.+
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~------------------~~~~~~~~~~~~l~~d~~------~~~lywsD~~~~~I~~~ 139 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEY------------------TSLIPNLRNVVALDTEVA------SNRIYWSDLSQRMICST 139 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSC------------------EEEECSCSCEEEEEEETT------TTEEEEEETTTTEEEEE
T ss_pred eeEEecc-ceeEEEccCCcce------------------eEeccccCcceEEeeeec------cCceEEEecCCCeEEEE
Confidence 4444443 5788888875421 112223356778888431 34444555567788888
Q ss_pred eccCCc----eeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcceEE
Q 014125 154 DATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (430)
Q Consensus 154 d~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (430)
++.... ....+... ......+++.+.+..|+ +. ..+.|.+.+++.... .. +. .........
T Consensus 140 ~~~g~~~~~~~~~~~~~~-----~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~---l~---~~~~~~P~~ 206 (400)
T 3p5b_L 140 QLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KT---LF---RENGSKPRA 206 (400)
T ss_dssp EC------CCCEEEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--EE---EE---ECSSCCEEE
T ss_pred EcccCCCCCcceEEEeCC-----CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--EE---EE---eCCCCCcce
Confidence 886522 22222211 12567889988555555 44 567888888764211 11 10 112234789
Q ss_pred EEEcCCCCceEEEecC-CCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 228 IAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 228 ~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
++++|.++.++.+-.. .+.|...++............-.....|++++++..|+.+....+.|..+|+........ .
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~--~ 284 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI--L 284 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE--E
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE--E
Confidence 9999966655555433 478999998754433333333356789999998888888876778999999876533221 1
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEE
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSF 362 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 362 (430)
...........+++. .+.++++-...+.|..+|..+++.+..+........+++.
T Consensus 285 ~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 112223345567663 3445556666788999998888777666544444455543
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=6.7e-06 Score=73.16 Aligned_cols=218 Identities=8% Similarity=-0.003 Sum_probs=136.3
Q ss_pred CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
....|+.+++............. .+..++|++.+..|+ +. ..+.|..+++..... . .+. .....
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~------~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--~---~~~---~~~~~ 159 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--E---EVV---STGLE 159 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--E---EEE---CSSCS
T ss_pred cCccceeeccCCCcEEEEecCCC------ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--E---EEE---eCCCC
Confidence 34568888887765544433222 577899998766666 54 678899998865321 1 110 11112
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~ 302 (430)
....+++.+.+++++++-...+.|.+.++........+.........++++|.+..|+.+.... +.|..+++.......
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 239 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence 3466888876777778777788999998875443333333335678999999888887776445 789888887653322
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
. . .........++++|++..|..+ +..+.|..+|++.......+........+|++ ..+.++++-...+.|...
T Consensus 240 ~-~---~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 240 I-A---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp E-E---CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred E-E---ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 1 1 1223456889999876655544 45678999998754333223323345677777 345555555555666554
Q ss_pred C
Q 014125 382 D 382 (430)
Q Consensus 382 ~ 382 (430)
+
T Consensus 315 ~ 315 (386)
T 3v65_B 315 N 315 (386)
T ss_dssp E
T ss_pred E
Confidence 3
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.83 E-value=1.8e-05 Score=69.34 Aligned_cols=216 Identities=8% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
...|+..++............. .+..++|++.+..|+ +. ..+.|..+++...... . +. ......
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~------~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~---~~---~~~~~~ 117 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--E---VV---STGLES 117 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--E---EE---CSSCSC
T ss_pred ccceEEEeCCCCeeEEeecCCC------ceEEEEEeccccEEEEEeccCCceEEEecCCCCce--E---EE---eCCCCC
Confidence 3458888886655443332221 567899998766666 54 6788999988753211 1 10 111123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVVY 303 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~~ 303 (430)
...+++.+.+++++++-...+.|.+.++........+.........++++|.+..|+.+.... +.|..+++......
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-- 195 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-- 195 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--
Confidence 567888886777778877888999999875543333333335678999999877777776455 78998888764322
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
.+. .........++++|++..|..+ ...+.|..+|++.......+........++++ ..+.+.++-...+.|...
T Consensus 196 ~~~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 196 IIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp ESC--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred EEE--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEE
Confidence 111 1234457889999876665554 45678999998754332223223345677777 345555555555555554
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.83 E-value=5.7e-07 Score=73.49 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=118.2
Q ss_pred eEEEEECCCCcEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 176 AFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 176 v~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
...+.|+. +.++. +|.+|.|+++|+.++...... +. . ...-..+++. +..+++..-.++.+.+||..+
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~----~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME---RL----G-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE---EC----T-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTT
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE---CC----C-CcceeEEEEe--CCEEEEEEccCCEEEEEECCc
Confidence 35778863 33333 447788999999875332211 11 1 1111234443 456777777899999999999
Q ss_pred ceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccC
Q 014125 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQD 333 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 333 (430)
.+.+.++... ..-..++ ++++.|+.+. .++.|.++|..+.+......... ...-..++.+.|. +|+..+..-.+
T Consensus 126 l~~~~ti~~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 126 PQRERTTRYS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp TEEEEEEECS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred CcEEEEEeCC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 9999888743 2223444 5788899888 79999999998875443222111 1112245667776 67655555567
Q ss_pred CcEEEEEcCCCCeecccccc-------------cCCeeEEEEcCCCcEEEEee
Q 014125 334 GLVHIYDLQTGKWISGFQAA-------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 334 g~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
+.|.+.|..+++.+..+... .+..++|+|+|+++.|...+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999987766422 13568999999776555444
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=6.5e-06 Score=77.17 Aligned_cols=240 Identities=14% Similarity=0.069 Sum_probs=136.3
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEE-EEECCCCcEEEEEc------CCeEEEEEcCCCCCcccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~ 210 (430)
+..++.++.|+.+..+|..+|+.+........... ..+.+ ... .++..++.+. ++.|..+|..++...++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG-STLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc-ceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45788888899999999999998887665331100 01111 111 1455544433 689999999876544322
Q ss_pred cccccC------C------------------------CCCCCcceEEEEEcCCCCceEEEecCC----------------
Q 014125 211 YSTLKG------N------------------------KEGQAGIMSAIAFSPTHTGMLAIGSYS---------------- 244 (430)
Q Consensus 211 ~~~~~~------~------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------- 244 (430)
...... . ..+.......+++.+. ...++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCccccCCccCCCceeE
Confidence 111000 0 0000001123556663 3455555432
Q ss_pred CeEEEEEcCCceeeEEeecc--c--------cCeEEEEEccCCC---EEEEEecCCCeEEEEeCCCCceEEEEeeccc--
Q 014125 245 QTSAIYREDNMELLYVLHGQ--E--------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVVYKLYRSS-- 309 (430)
Q Consensus 245 g~v~~~d~~~~~~~~~~~~~--~--------~~i~~~~~~~~~~---~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 309 (430)
+.|..+|.++++.+..++.. . .++ -+...++|+ .++.++ .+|.++++|..+++..........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHID-RNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeC-CCcEEEEEECCCCCEEeeecccCCcc
Confidence 36999999999988777532 1 111 122224674 456666 899999999998865543221110
Q ss_pred -------CCccce--------------------------EEEEEcCCCCEEEEEc-------------------------
Q 014125 310 -------EHTNQR--------------------------ILFDIEPSGRHLGTGG------------------------- 331 (430)
Q Consensus 310 -------~~~~~v--------------------------~~~~~~~~~~~l~~~~------------------------- 331 (430)
....++ ..++++|+..++++..
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 000111 2357788777666543
Q ss_pred ------------cCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 332 ------------QDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 332 ------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
.+|.|..||+.+++.+..+... ..+.+......+.+++.++.|+.+.++|.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 3478999999999988776532 23333333334566666777777777765
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.4e-06 Score=78.74 Aligned_cols=236 Identities=13% Similarity=0.108 Sum_probs=132.5
Q ss_pred cccCccCC-CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc-CC----eEEEEEc
Q 014125 129 PHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-NK----SVRVFDV 201 (430)
Q Consensus 129 ~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~----~i~v~d~ 201 (430)
|...+++| ++..|+.+...+.|+.+|+..+........ . .....++|+++++.|+ +.. ++ .+..++.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~-----~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L-----SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C-----SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C-----CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 44445576 355566665558899999887665444331 1 2677999999999666 433 12 2333443
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-cccCeEEEEEccCCCEE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l 280 (430)
... . .....+. .......++++|+++.++++-..++.|..++...+........ .......++|+|+|++|
T Consensus 213 ~g~-~--~~~~~l~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 213 ESG-F--KVITELT-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp GGT-S--CSEEEEE-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred CCc-e--eeeeeec-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 221 1 0000111 1123567889996676777777789999999987654222221 12346789999999977
Q ss_pred EEEecCCCeEEEEeCCCCc-eE--EEEeecc---cC---------CccceE-EEEEc--------CCCCEEEEEccCCcE
Q 014125 281 YTGGRKDPYILCWDLRKAV-QV--VYKLYRS---SE---------HTNQRI-LFDIE--------PSGRHLGTGGQDGLV 336 (430)
Q Consensus 281 ~~~~~~d~~i~i~d~~~~~-~~--~~~~~~~---~~---------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i 336 (430)
+.+....+.|..++..... .. ...+... .+ .-.... .++.. ++|.+.++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 7776578899998865421 11 0011100 00 011223 45553 346666666667788
Q ss_pred EEEEcCCCCeecccc-------c----------ccCCeeEEEEcCC-CcEEEEeeCCceee
Q 014125 337 HIYDLQTGKWISGFQ-------A----------AADTVNGFSFHPF-LPMAASSSGHRRFP 379 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~-------~----------~~~~v~~~~~~~~-~~~l~s~~~d~~~~ 379 (430)
+.++. +++...... + .-.....|+++|+ +.++++-..+.+|+
T Consensus 365 ~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 365 RILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp EEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred EEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 88883 454322211 0 0124688999984 55555544333333
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=1.2e-05 Score=75.49 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=152.0
Q ss_pred EEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe------CCC
Q 014125 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------RDH 148 (430)
Q Consensus 75 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------~dg 148 (430)
|+.++.|+.+.-+|..+++..-....... . ....+ .-.|. -.++ .+++++ .+|
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~-------~------~~~~~---~ssP~----v~~g-~V~vg~~g~e~g~~g 182 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDI-------K------VGSTL---TIAPY----VVKD-KVIIGSSGAELGVRG 182 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCG-------G------GTCBC---CSCCE----EETT-EEEECCBCGGGTCCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCC-------C------cccee---ecCCE----EECC-EEEEEecccccCCCC
Confidence 77888899999999988865432211100 0 00000 00010 0023 444444 378
Q ss_pred cEEEEeccCCceeeeeeccccccc--------------------------------ccce-EEEEECCCCcEEEEE-cC-
Q 014125 149 PIHLWDATTGLLRCTYRAYDAVDE--------------------------------ITAA-FSVAFNPTGTKIFAG-YN- 193 (430)
Q Consensus 149 ~i~vwd~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~~~~~~l~~~-~d- 193 (430)
.|+.+|..+|+.+..+........ ...+ ..+++.++...++.+ .+
T Consensus 183 ~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~ 262 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNP 262 (599)
T ss_dssp EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCC
T ss_pred eEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCC
Confidence 999999999998887765432100 0001 134566666666644 33
Q ss_pred ---------------CeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEc-CCCC--ceEEEecCCCeEEEEEcC
Q 014125 194 ---------------KSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFS-PTHT--GMLAIGSYSQTSAIYRED 253 (430)
Q Consensus 194 ---------------~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~--~~l~~~~~dg~v~~~d~~ 253 (430)
+.|..+|.+++...+........ .......++. +... .++. ..++.++.+|.++++|.+
T Consensus 263 ~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred ccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 37888888875443321111000 0011112222 2222 3232 467788999999999999
Q ss_pred CceeeEEeeccc-------------cCe--------------------------EEEEEccCCCEEEEEe----------
Q 014125 254 NMELLYVLHGQE-------------GGV--------------------------THVQFSRDGNYLYTGG---------- 284 (430)
Q Consensus 254 ~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~---------- 284 (430)
+++.+....... .++ ..++++|+...+++..
T Consensus 342 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (599)
T 1w6s_A 342 DGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPF 421 (599)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecc
Confidence 998876554110 011 2456777766665532
Q ss_pred ----------------------c------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcE
Q 014125 285 ----------------------R------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLV 336 (430)
Q Consensus 285 ----------------------~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 336 (430)
. ..|.|..||+.+++............... +...+.+++.++.||.+
T Consensus 422 ~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~-----~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 422 MLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT-----MATAGDLVFYGTLDGYL 496 (599)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC-----EEETTTEEEEECTTSEE
T ss_pred cccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcc-----eEecCCEEEEECCCCeE
Confidence 0 23688889998886554332211111111 12246778889999999
Q ss_pred EEEEcCCCCeecccccccCCe-eEEEEcCCCc-EEEEeeC
Q 014125 337 HIYDLQTGKWISGFQAAADTV-NGFSFHPFLP-MAASSSG 374 (430)
Q Consensus 337 ~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~s~~~ 374 (430)
+.||.++|+.+..++.....+ .-+.+..+|+ ++++.+.
T Consensus 497 ~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 999999999998886543322 2345556776 5555544
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.77 E-value=2.5e-06 Score=69.74 Aligned_cols=184 Identities=11% Similarity=0.107 Sum_probs=120.2
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
.....+.|+ ++.++.+.+.+|.|+++|+.+++..... .. ..----.++. . .+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~----------------~~~FgeGit~-------~-g~~L 108 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL----------------GNIFAEGLAS-------D-GERL 108 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC----------------TTCCEEEEEE-------C-SSCE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC----------------CCcceeEEEE-------e-CCEE
Confidence 345789998 4677888888999999999988765433 11 0000011222 1 1234
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.+....++.+.+||..+.+.+.++.... .-..++ ++++.|+.+ .++.|.++|..+.... ..+.-...
T Consensus 109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~----~~I~V~~~ 176 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMPPQRERTTRYSG------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV----GAVQVKLR 176 (268)
T ss_dssp EEEESSSCEEEEEETTTTEEEEEEECSS------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEE----EEEECEET
T ss_pred EEEEccCCEEEEEECCcCcEEEEEeCCC------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE----EEEEeCCC
Confidence 4445578899999999999999888642 223444 567777755 6889999998763211 11111001
Q ss_pred C-CCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-------------ccCeEEEEEccCCCEEEEEe
Q 014125 220 G-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 220 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~ 284 (430)
+ .-..++.+.|. ++.+++....+..|.+.|.++++.+..+... ..-.+.|+++|+++.|++++
T Consensus 177 g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 177 GQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 1 11235667776 3456666667889999999999988777632 12568999999988888887
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.76 E-value=4.7e-06 Score=67.53 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=117.8
Q ss_pred CceeEEEECcCCceEEEecCCC--eEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.....+.|++ +.++.+.+.+| .|+++|+.+++......... .----.++. . .+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----------------~~fgeGi~~-------~-~~ 75 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----------------PYFGAGIVA-------W-RD 75 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT----------------TCCEEEEEE-------E-TT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC----------------CcceeEEEE-------e-CC
Confidence 4466899987 66677777654 89999999886644332211 000011111 0 13
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
.+......++.+.++|..+.+.+.++.... .-..++ +++..|+.+ .++.|.++|..+.... ..+.-.
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~----~~I~V~ 143 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPG------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV----GSIKVT 143 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSS------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE----EEEECE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCC------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE----EEEEEc
Confidence 344445578899999999999999888643 223455 466666654 6788999998763211 111110
Q ss_pred CCCC-CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-------------ccCeEEEEEccCCCEEEEE
Q 014125 218 KEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVQFSRDGNYLYTG 283 (430)
Q Consensus 218 ~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~ 283 (430)
..+. -..++.+.+. ++.+++..-.+..|.+.|.++++.+..+... ..-.+.|+++|+++.|+++
T Consensus 144 ~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp ETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred cCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 0111 1235566665 4456666667889999999999988776522 1246889999999988888
Q ss_pred e
Q 014125 284 G 284 (430)
Q Consensus 284 ~ 284 (430)
+
T Consensus 222 G 222 (243)
T 3mbr_X 222 G 222 (243)
T ss_dssp E
T ss_pred C
Confidence 8
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.75 E-value=2.2e-06 Score=77.33 Aligned_cols=235 Identities=10% Similarity=0.026 Sum_probs=133.3
Q ss_pred cccCccCCC--CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCC-----eEEEEEc
Q 014125 129 PHMSASDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK-----SVRVFDV 201 (430)
Q Consensus 129 ~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~-----~i~v~d~ 201 (430)
|...+++|+ ...|+.+...+.|+.+++.++......... .....+++++++.++++...+ .+...+.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~------~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI------GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC------SCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC------CCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 333444663 334555544488999999877665443311 257899999999955555322 2333332
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe-ec-cccCeEEEEEccCCCE
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HG-QEGGVTHVQFSRDGNY 279 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~ 279 (430)
... .... ..+ ........++++|.++.++++-..++.|+.+|..++.....+ .. ....-..++|+|+++.
T Consensus 215 ~~~-~~~~--~~~-----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 215 ASG-FTER--LSL-----CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp GGT-TCCE--EEE-----EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred CCC-eecc--ccc-----cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 211 0000 000 011234567888866666666667889999999877652222 21 1122347999999997
Q ss_pred EEEEecCCCeEEEEeCCCCce-E--EEEeecc---c---------CCccceEEEEE---------cCCCCEEEEEccCCc
Q 014125 280 LYTGGRKDPYILCWDLRKAVQ-V--VYKLYRS---S---------EHTNQRILFDI---------EPSGRHLGTGGQDGL 335 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~-~--~~~~~~~---~---------~~~~~v~~~~~---------~~~~~~l~~~~~dg~ 335 (430)
|+.+....+.|+.++...... . ...+... . ..-.....+++ .++|.+.++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 877775778999988653211 0 0011110 0 01234667888 777777777777788
Q ss_pred EEEEEcCCCCeecccccc------------------cCCeeEEEEc-CCCcEEEEeeCCceee
Q 014125 336 VHIYDLQTGKWISGFQAA------------------ADTVNGFSFH-PFLPMAASSSGHRRFP 379 (430)
Q Consensus 336 i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~l~s~~~d~~~~ 379 (430)
|+.++. ++... .+.+. -....+|+++ +++.++++=..+++|+
T Consensus 367 I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 367 VRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp EEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred EEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence 999985 45332 22111 1236788888 5665555544333333
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.75 E-value=2.1e-05 Score=64.69 Aligned_cols=214 Identities=10% Similarity=0.083 Sum_probs=127.8
Q ss_pred eecccCCCceeEEEECcCCceE-EEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 54 RTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 54 ~~~~~h~~~v~~~~~sp~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
+.+.+-.+.+..++|+|+++.| ++...++.|...|.. ++..... .+......-.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i----------------~l~g~~D~EGIa~----- 77 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI----------------PLDFVKDLETIEY----- 77 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE----------------ECSSCSSEEEEEE-----
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE----------------ecCCCCChHHeEE-----
Confidence 3455666679999999976644 456678888888886 4322111 1111134555666
Q ss_pred ccCCCCceEEEEeCCCcEEEEeccCCce---eeeeecc-cccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCC--CC
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR--PG 205 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~v~d~~~--~~ 205 (430)
.+++.++++.-.++.+.++++..... ....... .........-.++|+|.+..|. +.......+|.++. ..
T Consensus 78 --~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 78 --IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp --CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred --eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 55677667766778899998766542 2222211 1112233567999999986666 44444445555431 11
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccc---------cCeEEEEEccC
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVQFSRD 276 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~ 276 (430)
...................+.+++++|..+.+++.+..+..+..+|.. ++.+..+.-.. .....|+|.++
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 111110000000011223578999999888889999999999999976 55554443221 25689999999
Q ss_pred CCEEEEEecCCCeEEEEe
Q 014125 277 GNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d 294 (430)
|+ |+..+ ..+.++.|.
T Consensus 235 G~-lyIvs-E~n~~y~f~ 250 (255)
T 3qqz_A 235 GN-IYIVS-EPNRFYRFT 250 (255)
T ss_dssp CC-EEEEE-TTTEEEEEE
T ss_pred CC-EEEEc-CCceEEEEE
Confidence 97 55566 677666664
No 269
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.74 E-value=6.5e-05 Score=62.91 Aligned_cols=215 Identities=11% Similarity=0.142 Sum_probs=136.2
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+|..+.+|.-. ..+++++|+++.+.+..+.... .|.--.|-.+. .|+--.+..|+-|++.....+.+.+...
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~~e------~VvfWkWis~~-~L~lVT~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------CEEEEEECSSS-EEEEEESSEEEEEESSTTCCCEEEEECC
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceecCC------ccEEEEecCCC-eEEEEcCCcEEEEcccCCCCCceeeecc
Confidence 45566666655 6789999999998888877654 77788887554 4444457899999997644443333222
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccCeEEEEEcc--CCCEEEEEe-c
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR--DGNYLYTGG-R 285 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~ 285 (430)
. .+. ...|..-..+++...++++|- -.|.+.+|..+. +..+.+++|......+.+.- ....|++-+ .
T Consensus 147 ~-~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 147 S-SLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp G-GGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred h-hcc--cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 1 111 345777777885555555553 247788998864 45567777766554443321 112233322 1
Q ss_pred --CCCeEEEEeCCCC--------ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 286 --KDPYILCWDLRKA--------VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 286 --~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
..+.+++.++... ++.....+.......-..++..++.-..+..-+.-|.|++||+.++.++..-+-..+
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d 302 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 302 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC
Confidence 2268999998543 112222233333455667788888878888889999999999999999877665555
Q ss_pred CeeEEE
Q 014125 356 TVNGFS 361 (430)
Q Consensus 356 ~v~~~~ 361 (430)
+|-.-+
T Consensus 303 ~iF~ta 308 (365)
T 2xzh_A 303 TIFVTA 308 (365)
T ss_dssp CEEEEE
T ss_pred ceEEec
Confidence 544333
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=7.8e-05 Score=73.14 Aligned_cols=286 Identities=10% Similarity=0.022 Sum_probs=166.4
Q ss_pred CCCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 59 h~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
....|.++...++|. |-.|+.++-|..++.............. ...........|.+++. .+++
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~v~~i~~-------d~~g 374 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT--------QMNESSLSNKVVSSVCD-------DGQG 374 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC------------CCCSSCCSSSCEEEEEE-------CTTS
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc--------ccccCCCCCcceEEEEE-------cCCC
Confidence 456799999998886 4456666668888876543211000000 00000012245777776 4455
Q ss_pred ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
. |..|+.++-|..|+..++..... .... ......|.++...+++.+.+++.++-|..++..+.. ... ....
T Consensus 375 ~-lWigt~~~Gl~~~~~~~~~~~~~-~~~~-~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~---~~~~- 445 (781)
T 3v9f_A 375 K-LWIGTDGGGINVFENGKRVAIYN-KENR-ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK--FQI---IELE- 445 (781)
T ss_dssp C-EEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE--EEE---CCST-
T ss_pred C-EEEEeCCCcEEEEECCCCeEEEc-cCCC-CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc--EEE---eccC-
Confidence 5 55566555699999876543221 1100 111237889999888988887777788888875421 111 1100
Q ss_pred CCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecc-----ccCeEEEEEccCCCEEEEEecCCCeEEEE
Q 014125 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-----EGGVTHVQFSRDGNYLYTGGRKDPYILCW 293 (430)
Q Consensus 219 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~d~~i~i~ 293 (430)
......|.++...+ .+ .|..|+. +-|..||..+++........ ...|.++...++|...+ ++ .++-|..|
T Consensus 446 ~~~~~~v~~i~~d~-~g-~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt-~~~Gl~~~ 520 (781)
T 3v9f_A 446 KNELLDVRVFYEDK-NK-KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GT-FGGGVGIY 520 (781)
T ss_dssp TTCCCCEEEEEECT-TS-EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EE-SSSCEEEE
T ss_pred CCCCCeEEEEEECC-CC-CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EE-cCCCEEEE
Confidence 12235688888877 34 4555555 56889998876544332211 35789999999887555 44 44447778
Q ss_pred eCCCCceEEEEeec-ccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----ccCCeeEEEEcCCCcE
Q 014125 294 DLRKAVQVVYKLYR-SSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----AADTVNGFSFHPFLPM 368 (430)
Q Consensus 294 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ 368 (430)
|..+.... .... ..-....|.++..+++|.+.++. .+|.|..||..+++.. .+.. ....|.++...++|.+
T Consensus 521 ~~~~~~~~--~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 521 TPDMQLVR--KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp CTTCCEEE--EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCE
T ss_pred eCCCCeEE--EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCE
Confidence 88765322 2211 11234578899998888865544 4675588998776532 2221 1235788888888887
Q ss_pred EEEeeCCceee
Q 014125 369 AASSSGHRRFP 379 (430)
Q Consensus 369 l~s~~~d~~~~ 379 (430)
.+++ ..|..+
T Consensus 597 W~~t-~~Gl~~ 606 (781)
T 3v9f_A 597 WAST-NTGISC 606 (781)
T ss_dssp EEEC-SSCEEE
T ss_pred EEEc-CCceEE
Confidence 6664 444333
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=0.00011 Score=72.08 Aligned_cols=289 Identities=11% Similarity=0.057 Sum_probs=165.9
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++...++|.+.+. +.+ -+.+||..++.......... .........|.++.. .++|.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~----------~~~~l~~~~i~~i~~-------d~~g~- 270 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPG----------NIHGALSSYIFSIKQ-------LKDNK- 270 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC---------------------CCCCEEEEEE-------CTTSE-
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCC----------ccccccCceEEEEEE-------CCCCC-
Confidence 56888988888876554 444 58888876543211000000 000012246777776 45565
Q ss_pred EEEEeCCCcEEEEeccCCceeeeee-------cc--cccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYR-------AY--DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
|..|+..+-|.+++..++....... .. ...-....|.++...++|.+-+++.++-|..++..... +...
T Consensus 271 lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~ 348 (781)
T 3v9f_A 271 LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT--FHTW 348 (781)
T ss_dssp EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS--CEEE
T ss_pred EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc--ceee
Confidence 4455554458899987765432211 10 00011236889999999988887778888888876432 1111
Q ss_pred cccc---CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe---eccccCeEEEEEccCCCEEEEEec
Q 014125 212 STLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGR 285 (430)
Q Consensus 212 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~ 285 (430)
.... .........|.++...++ + .|.+|+.++-|..||..++...... ......|.++...++|...+ ++
T Consensus 349 ~~~~~~~~~~~l~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt- 424 (781)
T 3v9f_A 349 SYSPTQMNESSLSNKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GT- 424 (781)
T ss_dssp C----CCCSSCCSSSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EE-
T ss_pred ccCccccccCCCCCcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Ee-
Confidence 1000 011112356889888773 3 4666776777999998765432211 11235689999888887544 55
Q ss_pred CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccc-----cCCeeEE
Q 014125 286 KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAA-----ADTVNGF 360 (430)
Q Consensus 286 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~ 360 (430)
.++-|..+|..+.... ...........|.++...++|.+.+ |+. +-|..+|..+++........ ...|.++
T Consensus 425 ~~~Gl~~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 425 YLGNISYYNTRLKKFQ--IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp TTEEEEEECSSSCEEE--ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred ccCCEEEEcCCCCcEE--EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 5677888988765321 2211112346788898888876554 444 45889998876543322111 3578999
Q ss_pred EEcCCCcEEEEeeCCceee
Q 014125 361 SFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~ 379 (430)
...++|.+.+.....|..+
T Consensus 501 ~~d~~g~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 501 AQDSEGRFWIGTFGGGVGI 519 (781)
T ss_dssp EECTTCCEEEEESSSCEEE
T ss_pred EEcCCCCEEEEEcCCCEEE
Confidence 9999888776655455433
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.73 E-value=5e-06 Score=80.89 Aligned_cols=197 Identities=11% Similarity=0.137 Sum_probs=110.5
Q ss_pred ceeEEEEC-cCCceEEEecC-C----CeEEEEeCCCC-CCcccccccccccccCcccceeeecCCCeeeeeeeccccCcc
Q 014125 62 FLKGIKWS-PDGSSFLTSSE-D----KTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (430)
Q Consensus 62 ~v~~~~~s-p~~~~l~s~~~-d----g~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (430)
.+...+|| |||++||.+.. + ..|+++|+.++ ..... .+ ......++|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---------------~~----~~~~~~~~W------- 228 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---------------KV----SGTNGEIVW------- 228 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---------------CE----EEECSCCEE-------
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---------------cc----cCceeeEEE-------
Confidence 57889999 99998885433 2 35999999876 42100 00 012345678
Q ss_pred CCCCceEEEEeCC-----CcEEEEeccCCcee--eeeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCC
Q 014125 135 DPTSCVFASTTRD-----HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHR 203 (430)
Q Consensus 135 ~~~~~~l~~~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~v~d~~~ 203 (430)
+||++.|+....+ ..|.++++.++... ..+..... .....+.|+|||++|+ .+ ....|.++|+..
T Consensus 229 spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 229 GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP----LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT----TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC----ceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 7788888777665 25788888776432 22222111 1345789999999888 33 245688888876
Q ss_pred CCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC----CeEEEEEcCCceeeEE-eecccc--CeEEEEEccC
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYV-LHGQEG--GVTHVQFSRD 276 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~-~~~~~~--~i~~~~~~~~ 276 (430)
+..... ...+ .........++.|+. ++.+++....+ ..|..+++.+...... +..+.. .+..+.+ .
T Consensus 305 ~~~~~~-~~~l---~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~ 377 (751)
T 2xe4_A 305 GNAHNT-LEIV---RPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--R 377 (751)
T ss_dssp CTTCCC-EEES---SCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--C
T ss_pred CCCCce-eEEe---ecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--E
Confidence 421110 0111 122234455566554 55566655543 3677777765222122 222333 3444544 4
Q ss_pred CCEEEEEecCCCe--EEEEeC
Q 014125 277 GNYLYTGGRKDPY--ILCWDL 295 (430)
Q Consensus 277 ~~~l~~~~~~d~~--i~i~d~ 295 (430)
+..|+.....++. |.++++
T Consensus 378 ~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 378 SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SSEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEEEeCCEEEEEEEec
Confidence 5666655547775 455564
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=3.2e-05 Score=72.58 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=102.7
Q ss_pred CeEEEEEcCCCCCcccccccccC--CCCCCCcceEEEEEc-CCCC--ceEEEecCCCeEEEEEcCCceeeEEeeccc---
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFS-PTHT--GMLAIGSYSQTSAIYREDNMELLYVLHGQE--- 265 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--- 265 (430)
+.|..+|..++...+........ .......++. +... .++. ..++.++.+|.++++|..+++.+..+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 57888888876544332111000 0011112222 2222 3232 478889999999999999998876654321
Q ss_pred ----------cC--------------------------------eEEEEEccCCCEEEEEec------------------
Q 014125 266 ----------GG--------------------------------VTHVQFSRDGNYLYTGGR------------------ 285 (430)
Q Consensus 266 ----------~~--------------------------------i~~~~~~~~~~~l~~~~~------------------ 285 (430)
.+ -..++++|+...+++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 013566776666655431
Q ss_pred --------------CCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 286 --------------KDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 286 --------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
.+|.|..||+.+++............... + ...+.+++.|+.||.++.||.++|+.+..++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~---~--~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGV---L--ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCC---E--EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccc---e--EeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 25789999999987654433211111111 1 1236788889999999999999999999887
Q ss_pred cccCCe-eEEEEcCCCc-EEEEeeC
Q 014125 352 AAADTV-NGFSFHPFLP-MAASSSG 374 (430)
Q Consensus 352 ~~~~~v-~~~~~~~~~~-~l~s~~~ 374 (430)
...+.. .-+.+..+|+ ++++.+.
T Consensus 525 ~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 525 TGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCcccCceEEEECCEEEEEEEcc
Confidence 544322 2256667777 5555443
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.72 E-value=5.5e-05 Score=65.14 Aligned_cols=218 Identities=11% Similarity=0.005 Sum_probs=131.9
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceee-eeecccccccccceEEEEECCCCcEEE-EE-cCCeE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSV 196 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i 196 (430)
.....+.|.+. ++.++.+-...+.|..+++..+.... .+... ......+++.+.+..|+ +. ..+.|
T Consensus 35 ~~~~~ld~d~~------~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-----l~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 35 EDAAAVDFVFS------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----LLSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEEGG------GTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-----CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CccEEEEEEeC------CCEEEEEECCCCcEEEEEccCCCceEEEEcCC-----CCCccEEEEEcCCCeEEEEECCCCEE
Confidence 35667888432 34455565667889999987663221 11111 11455788887665555 44 56789
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCCceeeEEeeccccCeEEEEEcc
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 275 (430)
.+++++.... .. +. .........++++|.++.++.+-. ..+.|..+++............-...+.|+++|
T Consensus 104 ~~~~~dG~~~--~~---l~---~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~ 175 (318)
T 3sov_A 104 EVSNLDGSLR--KV---LF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 175 (318)
T ss_dssp EEEETTSCSC--EE---EE---CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred EEEECCCCcE--EE---EE---eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEec
Confidence 9999864221 11 10 122234689999985555555542 367899988864333222222234568999999
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
++..|+.+....+.|..+|+....... .. .........+++.. +.++.+-...+.|..++..+++....+.....
T Consensus 176 ~~~~lY~aD~~~~~I~~~d~dG~~~~~-~~---~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~ 250 (318)
T 3sov_A 176 EEQKLYWADAKLNFIHKSNLDGTNRQA-VV---KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSDIF 250 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEE-EE---CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCS
T ss_pred cCCEEEEEECCCCEEEEEcCCCCceEE-Ee---cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCC
Confidence 888888887678899999987543322 11 12234456677753 44555666678899999988877665543333
Q ss_pred CeeEEE
Q 014125 356 TVNGFS 361 (430)
Q Consensus 356 ~v~~~~ 361 (430)
...+++
T Consensus 251 ~P~~i~ 256 (318)
T 3sov_A 251 SPMDIH 256 (318)
T ss_dssp SCCCEE
T ss_pred CCcEEE
Confidence 334443
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.72 E-value=5.8e-05 Score=62.07 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=127.3
Q ss_pred CeeeeeeeccccCccCCCC-ceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 014125 120 ESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR 197 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~ 197 (430)
..+..++|. |++ .++++...++.|...|+. ++.+..+..... ...-.+++.+++.++++. .++.+.
T Consensus 27 ~~lSGla~~-------~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 27 NNISSLTWS-------AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV----KDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp SCEEEEEEE-------TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC----SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred cCcceeEEe-------CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC----CChHHeEEeCCCEEEEEECCCCcEE
Confidence 468889994 444 455667888999999997 887777754321 245678899999877776 678899
Q ss_pred EEEcCCCCCccccccccc--CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC---CceeeEEee-------ccc
Q 014125 198 VFDVHRPGRDFEKYSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLH-------GQE 265 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~---~~~~~~~~~-------~~~ 265 (430)
++++..... ........ ............++|+|.+..+++ +.+.....+|.++ ....+..+. .+.
T Consensus 95 ~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 95 VISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 999876543 11111111 111233556899999995544444 4444444444433 111122221 122
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc----CCccceEEEEEcCCCCEEEEEccCCcEEEEEc
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS----EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDL 341 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 341 (430)
..+.+++++|....+++.+...+.|..+|..........+.... ..-...-.++|.++|++.++ ++-+.++++.-
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 35789999997766666665888999999876532222222100 01235678999999985554 67777777754
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=1.1e-05 Score=65.50 Aligned_cols=184 Identities=13% Similarity=0.047 Sum_probs=116.5
Q ss_pred ceEEEEECCCCcEEEE-EcC--CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEE
Q 014125 175 AAFSVAFNPTGTKIFA-GYN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~-~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d 251 (430)
-...+.|++ +.++.+ |.+ +.|+.+|+.++... ... .+ ..+ ..-..+++. +..++...-.++.+.+||
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-~~~-~l----~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-QRA-EV----PPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-EEE-EC----CTT-CCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-EEE-eC----CCC-cceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence 345788876 444443 443 58999999874321 111 11 111 111233443 455777777799999999
Q ss_pred cCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccC-CccceEEEEEcCCCCEEEEE
Q 014125 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSE-HTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 330 (430)
..+.+.+.++.... .-..++ +++..|+++. .++.|.++|..+............+ .-..++.+.+. +|+..+..
T Consensus 92 ~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 92 LATLTPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTTEEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CCcCcEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 99999998887432 224444 5788888888 6899999999987543322211111 11345566665 56655555
Q ss_pred ccCCcEEEEEcCCCCeecccccc-------------cCCeeEEEEcCCCcEEEEee
Q 014125 331 GQDGLVHIYDLQTGKWISGFQAA-------------ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 331 ~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~ 373 (430)
-.+..|.+.|..+++.+..+... ....++|+++|+++.|...+
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 56789999999999987765421 13568999999877555554
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=2.4e-05 Score=73.35 Aligned_cols=203 Identities=12% Similarity=0.084 Sum_probs=121.3
Q ss_pred CceEEEEeC-CCcEEEEec-cCCceeeeeecccccccc------cceEEEEECC-CCc----EEEEEcCCeEEEEEcCCC
Q 014125 138 SCVFASTTR-DHPIHLWDA-TTGLLRCTYRAYDAVDEI------TAAFSVAFNP-TGT----KIFAGYNKSVRVFDVHRP 204 (430)
Q Consensus 138 ~~~l~~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~------~~v~~~~~~~-~~~----~l~~~~d~~i~v~d~~~~ 204 (430)
+..+++++. ++.|.-+|. .+|+.+..+......... .....+++.| ++. +++.+.|+.|.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 345666776 889999999 899988887654321100 0012345533 333 444558899999999876
Q ss_pred CCcccccccccC-CCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccC----------
Q 014125 205 GRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGG---------- 267 (430)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~---------- 267 (430)
...++....... .......++ +. ++ .+++++ .+|.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~----v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPY----VV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCE----EE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CEEEeecCCCCCccceeecCCE----EE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 554432110000 000001111 11 33 455555 3799999999999988776532111
Q ss_pred ---------------------------e-EEEEEccCCCEEEEEecCC----------------CeEEEEeCCCCceEEE
Q 014125 268 ---------------------------V-THVQFSRDGNYLYTGGRKD----------------PYILCWDLRKAVQVVY 303 (430)
Q Consensus 268 ---------------------------i-~~~~~~~~~~~l~~~~~~d----------------~~i~i~d~~~~~~~~~ 303 (430)
+ ..+++.+....++.+. .+ +.|..+|.++++....
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 0 1346667777788776 44 4899999999876543
Q ss_pred EeecccCCc--------cceEEEEEc-CCC---CEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 304 KLYRSSEHT--------NQRILFDIE-PSG---RHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 304 ~~~~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
... ..|. .++. +... .+| ..++.++.+|.++++|..+|+++....
T Consensus 294 ~q~--~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 294 YQK--TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EES--STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eec--CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 332 2221 2222 3332 567 567888999999999999999876543
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.66 E-value=0.00014 Score=62.62 Aligned_cols=223 Identities=8% Similarity=0.010 Sum_probs=136.6
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCC--CcccccccccC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPG--RDFEKYSTLKG 216 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~--~~~~~~~~~~~ 216 (430)
|+.+.. ..|+..|+.+.+....+.... .+.+++|++.+..|+ +. ..+.|..+++.... .... .+.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~------~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~---~~~- 72 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVI- 72 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---EEE-
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCC------ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE---EEE-
Confidence 344333 458999998876555443222 567899998776665 55 56899999986511 0111 110
Q ss_pred CCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeC
Q 014125 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDL 295 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~ 295 (430)
.........+++++.+++++++-...+.|.++++........+.........++++|.+..|+.+.... +.|..+++
T Consensus 73 --~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 73 --SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp --CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred --eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 111123568888875677777777889999999875443333332335678999999877777776233 78888888
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeeccccc---ccCCeeEEEEcCCCcEEEE
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQA---AADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s 371 (430)
....... +. ...-.....++++|++..|..+ +..+.|..+|++... ...+.. ......++++. .+.++++
T Consensus 151 dG~~~~~--~~--~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~ 224 (316)
T 1ijq_A 151 NGVDIYS--LV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWT 224 (316)
T ss_dssp TSCCEEE--EE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEE
T ss_pred CCCCeEE--EE--ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEE
Confidence 6543321 11 1233567889999877666555 456789999987432 222221 12345677775 3556666
Q ss_pred eeCCceeeecC
Q 014125 372 SSGHRRFPVDD 382 (430)
Q Consensus 372 ~~~d~~~~vw~ 382 (430)
-...+.|...+
T Consensus 225 d~~~~~V~~~~ 235 (316)
T 1ijq_A 225 DIINEAIFSAN 235 (316)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCeEEEEe
Confidence 65566666654
No 279
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=3.9e-05 Score=72.00 Aligned_cols=208 Identities=18% Similarity=0.136 Sum_probs=117.6
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccc---cc-eEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI---TA-AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~-v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+++++.++.|..+|..+|+.+..+......... .. ...++. .++..++.+.++.|.-+|..++...++......
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~ 148 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFADH 148 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECSCG
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCC
Confidence 4555555344999999999998887654321100 00 011222 245555566899999999988655443211100
Q ss_pred C-CCCCCCcceEEEEEcC-CCCceEEEec------CCCeEEEEEcCCceeeEEeeccccC--------------------
Q 014125 216 G-NKEGQAGIMSAIAFSP-THTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGG-------------------- 267 (430)
Q Consensus 216 ~-~~~~~~~~v~~~~~~~-~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~-------------------- 267 (430)
. .......++ +.=.. ++...+++++ .++.|+.+|..+++.+.........
T Consensus 149 ~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 149 GAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp GGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 0 000011111 11111 1122566655 3789999999999887655421100
Q ss_pred ---------------------eEEEEEccCCCEEEEEecC-------------------C----CeEEEEeCCCCceEEE
Q 014125 268 ---------------------VTHVQFSRDGNYLYTGGRK-------------------D----PYILCWDLRKAVQVVY 303 (430)
Q Consensus 268 ---------------------i~~~~~~~~~~~l~~~~~~-------------------d----~~i~i~d~~~~~~~~~ 303 (430)
-..++++|....++.+... | +.|..+|..+++....
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 0135666777777776621 2 5899999999876654
Q ss_pred Eeeccc------CCccceEEEEEc-CCCC---EEEEEccCCcEEEEEcCCCCeecccc
Q 014125 304 KLYRSS------EHTNQRILFDIE-PSGR---HLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 304 ~~~~~~------~~~~~v~~~~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
...... ....++. +... .+|+ .++.++.+|.++++|..+|+++..+.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 332111 0112222 2222 4674 78889999999999999999876544
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.64 E-value=0.00012 Score=70.87 Aligned_cols=210 Identities=12% Similarity=0.011 Sum_probs=125.8
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc----eeeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
..+..++|.+. ++.++++-...+.|+.+++.... ....+... ...+..|++.+.+..|+ +. ..
T Consensus 424 ~~~~gl~~d~~------~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-----l~~P~GLAvD~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 424 RNVVALDTEVA------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVL 492 (791)
T ss_dssp SSEEEEEEETT------TTEEEEEETTTTEEEEEEC--------CEEEECSS-----CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEeeccc------CCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-----CCCcceeeeeecCCcEEEEecCC
Confidence 45667777331 34455555666788888886531 12222211 12556899988886666 44 67
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.|.+.++..... . .+. .........|+++|..+.++++-... +.|...++........+...-.....|+
T Consensus 493 ~~I~v~~ldG~~~--~---~l~---~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLa 564 (791)
T 3m0c_C 493 GTVSVADTKGVKR--K---TLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 564 (791)
T ss_dssp TEEEEEETTSSSE--E---EEE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred CeEEEEeCCCCeE--E---EEE---eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEE
Confidence 8899999864211 1 111 11223478999999656566554333 7899999875544433333335688999
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ 351 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 351 (430)
+++.+..|+.+....+.|..+++......... ...........|++.. +.++++-...+.|...|..+++.+..+.
T Consensus 565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~--~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EecCCCeEEEEeCCCCcEEEEecCCCceEEEe--cCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 99888888888767789999999765433221 1112223445666643 3444455566788888887776655553
No 281
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.63 E-value=0.0002 Score=62.46 Aligned_cols=217 Identities=11% Similarity=0.135 Sum_probs=138.6
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+|..+.+|.-. ..++.++|+++...+..+.... .|.-..|-.+. .|+--.+..|+-|++.....+.+.+...
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e------~VvfWkWis~~-~l~lVT~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEEEETT-EEEEECSSEEEEEESSSSCCCEEEEECC
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC------CceEEEecCCC-eEEEEcCCeeEEecccCCCCchhheecc
Confidence 55566666654 6789999999998888777654 66677786544 4554467899999997644443333221
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccC--CCEEEEEecC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRK 286 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~ 286 (430)
. .+. ...|..-..+++...++++|- -.|.+.+|..+ .+..+.+++|.+....+...-+ ...|++-...
T Consensus 146 ~-~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 146 S-SLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp G-GGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred h-hcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 1 111 345777777885555555553 24778899886 4455677888766655554321 1223333212
Q ss_pred ---CCeEEEEeCCCC--------ceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 287 ---DPYILCWDLRKA--------VQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 287 ---d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
.+.+++.++... ++.....+.......-..++..++.-..+..-+.-|.|++||+.++.++..-+-...
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~ 301 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 301 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC
Confidence 378999998543 112222222233455667888888888888889999999999999999887665555
Q ss_pred CeeEEEEc
Q 014125 356 TVNGFSFH 363 (430)
Q Consensus 356 ~v~~~~~~ 363 (430)
+|-.-+-+
T Consensus 302 ~iF~t~~~ 309 (494)
T 1bpo_A 302 TIFVTAPH 309 (494)
T ss_dssp CEEEEEEE
T ss_pred ceEEeccc
Confidence 55444433
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.62 E-value=0.00025 Score=63.29 Aligned_cols=227 Identities=7% Similarity=-0.024 Sum_probs=137.3
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~ 217 (430)
+|+.+ ....|+..++............ ..+..++|++.+..|+ +. ..+.|+.+++......... ..+
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~-~~~--- 153 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTV--- 153 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-EEE---
T ss_pred eeEEe-ccceeEEEccCCcceeEecccc------CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-eEE---
Confidence 34433 3467999998876554443322 2678999998776666 54 6788998888642110000 011
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecC-CCeEEEEeCC
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK-DPYILCWDLR 296 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-d~~i~i~d~~ 296 (430)
..........+++.+.+++++++-...+.|.+.++........+.........|+++|.+..|+.+... .+.|...++.
T Consensus 154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 111223577899988677778887788999999987655444444334457899999987777776522 3789888887
Q ss_pred CCceEEEEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeeccccc--ccCCeeEEEEcCCCcEEEEee
Q 014125 297 KAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQA--AADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~ 373 (430)
....... . ...-.....++++|++..|+.+ ...+.|..+|++.......... ......+++.. .+.++.+-.
T Consensus 234 G~~~~~~-~---~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~ 308 (400)
T 3p5b_L 234 GVDIYSL-V---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI 308 (400)
T ss_dssp SCSCEEE-E---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEES
T ss_pred CCccEEE-E---ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecC
Confidence 6533321 1 1233567889999877766655 4567899999875433222221 12344566663 344555554
Q ss_pred CCceeeecC
Q 014125 374 GHRRFPVDD 382 (430)
Q Consensus 374 ~d~~~~vw~ 382 (430)
..+.|...+
T Consensus 309 ~~~~V~~~~ 317 (400)
T 3p5b_L 309 INEAIFSAN 317 (400)
T ss_dssp SSCSEEEEE
T ss_pred CCCeEEEEE
Confidence 455555443
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=3.6e-05 Score=69.69 Aligned_cols=206 Identities=14% Similarity=0.086 Sum_probs=118.2
Q ss_pred cCccCCC--CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEE-------CCCCcEEE-EEcCC------
Q 014125 131 MSASDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF-------NPTGTKIF-AGYNK------ 194 (430)
Q Consensus 131 ~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~-~~~d~------ 194 (430)
..+++|. ++++++....+.|++.|+.++.......... ........++| ++++..|+ +...+
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 3344662 4444444445679999998877665544322 12235789999 99998666 44332
Q ss_pred -eEEEEEcCCCCCcccc-c--ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC-------Ccee------
Q 014125 195 -SVRVFDVHRPGRDFEK-Y--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-------NMEL------ 257 (430)
Q Consensus 195 -~i~v~d~~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~-------~~~~------ 257 (430)
.|.+++....+. +.. . ..+. . -.....++++|+++.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~-~~~~~~~~~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 221 PSVYIIKRNADGT-FDDRSDIQLIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEECCTTSC-CSTTSCEEEEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred ceEEEEecCCCCc-eeecccceeec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 255665332111 110 0 0111 0 11245678899777788888889999999987 4443
Q ss_pred -----eEE-ee-ccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEE---EEeecc---cC---------Cccce
Q 014125 258 -----LYV-LH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV---YKLYRS---SE---------HTNQR 315 (430)
Q Consensus 258 -----~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~---~~~~~~---~~---------~~~~v 315 (430)
... +. ........|+|+|+|+.|+.+....+.|+.++........ ..+... .+ .-...
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 111 11 1223467999999999777776578899996654322111 111110 11 11223
Q ss_pred E-EEEEc-------CCCCEEEEEccCCcEEEEEcCCCC
Q 014125 316 I-LFDIE-------PSGRHLGTGGQDGLVHIYDLQTGK 345 (430)
Q Consensus 316 ~-~~~~~-------~~~~~l~~~~~dg~i~vwd~~~~~ 345 (430)
. .+... ++|.++++-....+|+.++ .++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~ 411 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI 411 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence 4 44554 4566777767788899998 4453
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.60 E-value=5.2e-05 Score=64.80 Aligned_cols=206 Identities=12% Similarity=0.153 Sum_probs=126.0
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECC----CCc---EEEEE--c--CCeEEEEEcCC
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP----TGT---KIFAG--Y--NKSVRVFDVHR 203 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~---~l~~~--~--d~~i~v~d~~~ 203 (430)
.|...+++.....+-+.+||+ +|+.+..+... .+..+..-| .++ +++++ . +++|.+|++..
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g-------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTG-------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEET-TSCEEEEECCS-------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CCCccEEEEEcCCCCEEEEcC-CCcEEEEccCC-------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 445566777777888999999 88888777541 333444333 222 23344 3 58899998854
Q ss_pred CCCcccccccccCCCCCCCcceEEEEE--cCCCC-ceEEEecCCCeEEEEEcC-------CceeeEEeeccccCeEEEEE
Q 014125 204 PGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHT-GMLAIGSYSQTSAIYRED-------NMELLYVLHGQEGGVTHVQF 273 (430)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~l~~~~~dg~v~~~d~~-------~~~~~~~~~~~~~~i~~~~~ 273 (430)
....+................+..+++ +|..+ .++++...+|.+..|++. +.+.++++.. .+.+..+..
T Consensus 109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcvv 187 (355)
T 3amr_A 109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAA 187 (355)
T ss_dssp TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEE
T ss_pred CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEE
Confidence 333232221110000011134566676 67444 367778888999999883 3355666663 467889999
Q ss_pred ccCCCEEEEEecCCCeEEEEeCCCCc----eEEEEeecccCCccceEEEEE--cCCCC-EEEEEc-cCCcEEEEEcC-CC
Q 014125 274 SRDGNYLYTGGRKDPYILCWDLRKAV----QVVYKLYRSSEHTNQRILFDI--EPSGR-HLGTGG-QDGLVHIYDLQ-TG 344 (430)
Q Consensus 274 ~~~~~~l~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~vwd~~-~~ 344 (430)
.+....|+++- .+.-|..++.+... ..+... ........+..+++ .++++ ||++++ .++++.+||.. +.
T Consensus 188 Dd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~-~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~ 265 (355)
T 3amr_A 188 DDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN 265 (355)
T ss_dssp ETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEB-SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred cCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEe-cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence 99888999998 77777777755221 222221 11222335777777 45555 666555 56789999997 66
Q ss_pred Ceecccc
Q 014125 345 KWISGFQ 351 (430)
Q Consensus 345 ~~~~~~~ 351 (430)
+.+..|.
T Consensus 266 ~~vg~f~ 272 (355)
T 3amr_A 266 KYVADFR 272 (355)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 7766664
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.55 E-value=0.00018 Score=61.98 Aligned_cols=221 Identities=9% Similarity=0.019 Sum_probs=132.6
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
...|+..++........+.... ...+.++.|++.+..|+ +. ..+.|..+++......... . ......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~---~----~~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG----LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV---V----VSGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE----EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE---E----EECCSC
T ss_pred cCeEEEEECCCCceEEEEEecC----CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE---E----cCCCCC
Confidence 4568999987764211111110 11566899998766665 55 6788999988653211100 0 011123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-CCCeEEEEeCCCCceEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRKAVQVVY 303 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~i~d~~~~~~~~~ 303 (430)
...+++.+.+++++++-...+.|.++++........+.........++++|.+..|+.+.. ..+.|...++.......
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~- 159 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI- 159 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-
Confidence 5678888767777787777889999998754333333333456789999998777777662 25788888887543221
Q ss_pred EeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecC
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDD 382 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~ 382 (430)
.. ...-.....++++|++..|..+ +..+.|..+|++................++++.. +.++.+-...+.|...+
T Consensus 160 ~~---~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 160 II---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 235 (318)
T ss_dssp EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EE---ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence 11 1223456789999976665554 4567899999874332222222334556777753 34555544556666554
Q ss_pred C
Q 014125 383 F 383 (430)
Q Consensus 383 ~ 383 (430)
.
T Consensus 236 ~ 236 (318)
T 3sov_A 236 K 236 (318)
T ss_dssp T
T ss_pred C
Confidence 3
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.53 E-value=8.7e-07 Score=85.10 Aligned_cols=220 Identities=12% Similarity=0.013 Sum_probs=123.5
Q ss_pred eeeeeeeccccCccCCCCceEEEE-eCCCcEEEEeccC----CceeeeeecccccccccceEEEEECCCCcEEE-EE-cC
Q 014125 121 SVYDFCWFPHMSASDPTSCVFAST-TRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d 193 (430)
.+..++| ++.+..|+.+ ...+.|+.+++.. ......+... ......+++.+.+..|+ +. ..
T Consensus 407 ~p~gla~-------d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-----~~~P~glavD~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 407 NVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVL 474 (699)
T ss_dssp TCCCCEE-------ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-----C--CCCEECCCSSSBCEECCTTT
T ss_pred ceEEEcc-------ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-----CCCcceEEEEeeCCcEEEEeccC
Confidence 4456666 4444444444 4567899998875 1211111110 11345688876554444 43 56
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-CeEEEEEcCCceeeEEeeccccCeEEEE
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~i~~~~ 272 (430)
+.|.++++..... . .+. .........++++|.++.++++-... +.|..+++........+...-.....|+
T Consensus 475 ~~I~v~d~dg~~~--~---~l~---~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla 546 (699)
T 1n7d_A 475 GTVSVADTKGVKR--K---TLF---REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 546 (699)
T ss_dssp SCEEEEBSSSCCE--E---EEC---CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred CeEEEEecCCCce--E---EEE---eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence 7899988764211 1 111 11112356788998666555554333 7888888764332222222234467899
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
|+|++..|+.+....+.|..+++....... +............+++..+ .++++....+.|..++..+++.+..+..
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~--~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCCEE--ECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCceEE--EEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 999888787777577899999997543222 1111111223344555543 4555556678899999888887776654
Q ss_pred ccCCeeEEEEc
Q 014125 353 AADTVNGFSFH 363 (430)
Q Consensus 353 ~~~~v~~~~~~ 363 (430)
......+|++.
T Consensus 624 ~~~~P~~i~v~ 634 (699)
T 1n7d_A 624 NLLSPEDMVLF 634 (699)
T ss_dssp TCSSCCCCCBC
T ss_pred CCCCCcEEEEe
Confidence 33344455443
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.52 E-value=0.00039 Score=67.40 Aligned_cols=220 Identities=7% Similarity=-0.022 Sum_probs=130.5
Q ss_pred CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
....|+..++............. .+..++|++.+..|+ +. ..+.|+.+++......... ..+. .....
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~------~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~-~~vi---~~~l~ 471 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVI---SRDIQ 471 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEE---CSSCS
T ss_pred cccceeEeeccCCcceeeecCCC------ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce-eEEE---ecCCC
Confidence 34568888887665444433222 677899998666665 54 5678888888642110000 0111 11223
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~ 302 (430)
....|++.+.+++++++-...+.|.+.++........+.........|+++|.+.+|+.+.... +.|...++.......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 4567899886777888888889999999975544433433445678999999877777776233 789999987654332
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccc--cCCeeEEEEcCCCcEEEEeeCCceee
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAA--ADTVNGFSFHPFLPMAASSSGHRRFP 379 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~~~ 379 (430)
.. .........|++++.+..|+.+ ...+.|...+++.......+... .....+|++.. +.+.++-...+.|.
T Consensus 552 -lv---~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 552 -LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF 626 (791)
T ss_dssp -EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred -EE---eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEE
Confidence 11 2233567889999876666655 44567999998754433322221 12344666533 23333333344444
Q ss_pred e
Q 014125 380 V 380 (430)
Q Consensus 380 v 380 (430)
.
T Consensus 627 ~ 627 (791)
T 3m0c_C 627 S 627 (791)
T ss_dssp E
T ss_pred E
Confidence 3
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00014 Score=65.57 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=132.4
Q ss_pred ceeEEEECc-CCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 62 FLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 62 ~v~~~~~sp-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
....|+++| ++..|..+...+.|+.+|+..+... ...........++| +++++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~------------------~~~~~~~~P~~ia~-------d~~G~~ 192 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS------------------TVYSGLSKVRTICW-------THEADS 192 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE------------------EEECCCSCEEEEEE-------CTTSSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE------------------EEecCCCCcceEEE-------eCCCCE
Confidence 457899998 4555555555478888988754221 11112345667777 778885
Q ss_pred EEEEeC-CC----cEEEEeccCCcee--eeeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCCccccc
Q 014125 141 FASTTR-DH----PIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 141 l~~~~~-dg----~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~ 211 (430)
|+.+.. ++ .+.+.+. .+... ..+.. ......++++| ++.++++. .++.|..++...... ...
T Consensus 193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~~~ 263 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--TPL 263 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--EEE
T ss_pred EEEEeCCCCcccceEEEEeC-CCceeeeeeecc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--EEE
Confidence 655544 22 2333343 33222 22221 11456889999 66666665 678899999864211 011
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC--cee--eEEeecc---------------ccCeE-EE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLHGQ---------------EGGVT-HV 271 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~--~~~~~~~---------------~~~i~-~~ 271 (430)
.. .+.......++|+|++..++++-...+.|..++... ++. ...+.+. -.... .+
T Consensus 264 ~~-----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 264 FT-----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp EE-----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred EE-----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 00 111234678999995554677777788999987653 221 1122111 01122 44
Q ss_pred EEc--------cCCCEEEEEecCCCeEEEEeCCCCceEEEEeec----ccC----------CccceEEEEEcCC-CCEEE
Q 014125 272 QFS--------RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR----SSE----------HTNQRILFDIEPS-GRHLG 328 (430)
Q Consensus 272 ~~~--------~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~----------~~~~v~~~~~~~~-~~~l~ 328 (430)
+.. ++| .|+++....+.|+.++.. + ........ ..+ .-.....++++|+ +.+++
T Consensus 339 ~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~-G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV 415 (430)
T 3tc9_A 339 FVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQ-G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFI 415 (430)
T ss_dssp EEECGGGTTSSCCE-EEEEEEGGGTEEEEECTT-S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred EEccccccccCCCC-eEEEEECCCcEEEEECCC-C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEE
Confidence 543 234 455555467889988843 3 22222211 001 1225788999994 66666
Q ss_pred EEccCCcEEEEEcC
Q 014125 329 TGGQDGLVHIYDLQ 342 (430)
Q Consensus 329 ~~~~dg~i~vwd~~ 342 (430)
+-..+++|+.++++
T Consensus 416 aD~~n~rIr~i~~e 429 (430)
T 3tc9_A 416 GDRENRRIRKIGYE 429 (430)
T ss_dssp EEGGGTEEEEEEEC
T ss_pred EECCCCeEEEEccC
Confidence 65667788888764
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.48 E-value=0.00049 Score=59.63 Aligned_cols=278 Identities=9% Similarity=0.026 Sum_probs=142.9
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
...+.+|.|.+++..+++ +.+|.|. ...+.++.=...... .......+.++.+ ++ +.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~-------------~~~~~~~~~~i~~-------~~-~~ 91 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLV-------------LDHSDYRFNSVSF-------QG-NE 91 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCC-------------CSCCCCEEEEEEE-------ET-TE
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCC-------------CCCCCccEEEEEe-------cC-Ce
Confidence 346899999887777774 4567552 233322210000000 0011346777777 33 33
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCC
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 219 (430)
.++ ++..|.|.. ....|+.-....... .....+..+.+.+++..++++.++.| |.....+..+.... .
T Consensus 92 ~~~-~g~~g~i~~-S~DgG~tW~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~------~ 159 (327)
T 2xbg_A 92 GWI-VGEPPIMLH-TTDGGQSWSQIPLDP--KLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALV------Q 159 (327)
T ss_dssp EEE-EEETTEEEE-ESSTTSSCEECCCCT--TCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEE------C
T ss_pred EEE-EECCCeEEE-ECCCCCCceECcccc--CCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEee------c
Confidence 344 445563332 222333322222111 01124567777777777777766654 33333344443322 1
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEc--CCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCC
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~ 297 (430)
.....+..+.+.| ++.+++++...+..+-.|- .+.+.+. ......+..+.+.+++..++ .+ .+|.+++.+...
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~-~~G~~~~s~~D~ 234 (327)
T 2xbg_A 160 EAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IV-NGGKIAFSDPDN 234 (327)
T ss_dssp SCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EE-TTTEEEEEETTE
T ss_pred CCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-Ee-CCceEEEecCCC
Confidence 2234688899998 5556666654333333342 2223331 23446788999999987554 44 688887764221
Q ss_pred CceEEEEeecc-cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc---cccCCeeEEEEcCCCcEEEEee
Q 014125 298 AVQVVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ---AAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 298 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
+ ......... ......+..+.+.+++..++++. +|.| ++..+.++.-..+. .....+.++.|.+++. +++++
T Consensus 235 G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G 310 (327)
T 2xbg_A 235 S-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG 310 (327)
T ss_dssp E-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred C-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence 2 111111111 11223578899998887777665 6666 44555554433333 2235678888876555 44444
Q ss_pred CCceeeec
Q 014125 374 GHRRFPVD 381 (430)
Q Consensus 374 ~d~~~~vw 381 (430)
.+|.+.-+
T Consensus 311 ~~G~i~~~ 318 (327)
T 2xbg_A 311 QKGILLRY 318 (327)
T ss_dssp STTEEEEE
T ss_pred CCceEEEE
Confidence 45544433
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.41 E-value=0.0015 Score=61.90 Aligned_cols=203 Identities=10% Similarity=-0.021 Sum_probs=126.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR 197 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~ 197 (430)
.....++|.+. ++.++++-..++.|..+++........+.... ..+..+++.+.+..|+ +. ..+.|.
T Consensus 37 ~~~~~l~~d~~------~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-----~~P~GlAvD~~~~~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 37 KEASALDFDVT------DNRIYWTDISLKTISRAFMNGSALEHVVEFGL-----DYPEGMAVDWLGKNLYWADTGTNRIE 105 (628)
T ss_dssp SCEEEEEEETT------TTEEEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CceEEEEEECC------CCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-----CCcceEEEEeCCCEEEEEECCCCEEE
Confidence 35677888431 34455555667889999887654433332211 1456888887766666 44 568899
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (430)
+.+++.... . .+. .........++++|..+.++.+- +..+.|...++.......... .-.....|+++++
T Consensus 106 v~~~dG~~~--~---~l~---~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~ 176 (628)
T 4a0p_A 106 VSKLDGQHR--Q---VLV---WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYA 176 (628)
T ss_dssp EEETTSTTC--E---EEE---CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETT
T ss_pred EEecCCCcE--E---EEE---eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccc
Confidence 998864321 1 111 11223468999999556555553 235788888886544333333 3456789999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+..|+.+....+.|..+|+....... +.. .......+++.. +..+++-...+.|...|..+++...
T Consensus 177 ~~~LY~aD~~~~~I~~~d~dG~~~~v--~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 177 KRRLYWTDLDTNLIESSNMLGLNREV--IAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEE--EEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred cCEEEEEECCCCEEEEEcCCCCceEE--eec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 88888887678899999997654422 211 223445677765 4445555557889999977765433
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.32 E-value=0.00055 Score=61.70 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=130.5
Q ss_pred ceeEEEECcC--CceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 62 FLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 62 ~v~~~~~sp~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
....|+|+|+ +..|..+...+.|+.++..++... ...........+++ +++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~------------------~~~~~~~~P~giav-------d~dG~ 194 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD------------------IKTTNIGQCADVNF-------TLNGD 194 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE------------------EECCCCSCEEEEEE-------CTTCC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE------------------EeecCCCCccEEEE-------CCCCC
Confidence 4568999985 334444443378999988655321 11112234666777 77888
Q ss_pred eEEEEeCC---C-cEEEEeccCCcee-eeeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCCcccccc
Q 014125 140 VFASTTRD---H-PIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 140 ~l~~~~~d---g-~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~ 212 (430)
++++.... . .+...+...+... ..+.. ......++++| ++.++++. .++.|+.++...+... ....
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~ 267 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLCN------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEV 267 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEEE------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEE
T ss_pred EEEEcCCCCcccceEEEEECCCCeeccccccc------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEe
Confidence 44444321 1 1333333222110 11111 11455789999 66666555 5678888887642210 1110
Q ss_pred cccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Ccee--eEEeecc---------------ccCeEEEEE
Q 014125 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMEL--LYVLHGQ---------------EGGVTHVQF 273 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~~--~~~~~~~---------------~~~i~~~~~ 273 (430)
. .+.......++|+|++..++++-...+.|+.++.. ++.. ...+.+. -.....+++
T Consensus 268 ~-----~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav 342 (433)
T 4hw6_A 268 M-----MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF 342 (433)
T ss_dssp E-----CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred c-----cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence 0 01112234799999655477777778899998865 2221 1111111 123567898
Q ss_pred ---------ccCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc--------------CCccceEEEEEc-CCCCEEEE
Q 014125 274 ---------SRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS--------------EHTNQRILFDIE-PSGRHLGT 329 (430)
Q Consensus 274 ---------~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~~~l~~ 329 (430)
.++|. |+++....+.|+.++.. + .......... ..-.....++++ ++|.++++
T Consensus 343 ~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~-G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 343 VKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE-G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EECGGGTTSSCCEE-EEEEETTTTEEEEECTT-S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EccccccccCCCCc-EEEEECCCCEEEEECCC-C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 66665 44444377899999853 3 2222211100 012346789999 66666666
Q ss_pred EccCCcEEEEEcC
Q 014125 330 GGQDGLVHIYDLQ 342 (430)
Q Consensus 330 ~~~dg~i~vwd~~ 342 (430)
-..+++|+.++++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 6667788888764
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.31 E-value=2.2e-05 Score=75.45 Aligned_cols=220 Identities=8% Similarity=-0.013 Sum_probs=123.5
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCCcccccccccCCCCCCCcc
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (430)
.+.|+..++........+.... .+..++|++.+..|+.+ ..+.|+.+++......... ..+ .......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~------~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~-~~~---i~~~~~~ 454 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTV---ISRDIQA 454 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT------TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC-CCB---CCSCC--
T ss_pred ccceEEEeCCCCcceeeeccCc------ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce-EEE---EeCCCCC
Confidence 3568888887765543332221 55688999877777644 5688999998641100000 001 0111123
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCceEEE
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAVQVVY 303 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~~~~~ 303 (430)
...+++.+.+++++++-...+.|.++++........+.........|+++|.+.+|+.+.... +.|..+++.......
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~- 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS- 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-
Confidence 456788865677777767788999999876544433332234567899999777676655223 688888876543221
Q ss_pred EeecccCCccceEEEEEcCCCCEE-EEEccCCcEEEEEcCCCCeecccc--cccCCeeEEEEcCCCcEEEEeeCCceeee
Q 014125 304 KLYRSSEHTNQRILFDIEPSGRHL-GTGGQDGLVHIYDLQTGKWISGFQ--AAADTVNGFSFHPFLPMAASSSGHRRFPV 380 (430)
Q Consensus 304 ~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~~~v 380 (430)
+. .........++|+|++..| ++-+..+.|.++++........+. .......+|++..+ .++++....+.|..
T Consensus 534 -l~--~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 534 -LV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp -ES--CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred -EE--eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 11 1123345679999876544 455566789999987433222221 11123345555443 44444444444544
Q ss_pred c
Q 014125 381 D 381 (430)
Q Consensus 381 w 381 (430)
.
T Consensus 610 ~ 610 (699)
T 1n7d_A 610 A 610 (699)
T ss_dssp E
T ss_pred E
Confidence 4
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=2.3e-05 Score=76.34 Aligned_cols=147 Identities=15% Similarity=0.075 Sum_probs=88.8
Q ss_pred ceEEEEEc-CCCCceEEEecCCC----eEEEEEcCCc-eeeEEeeccccCeEEEEEccCCCEEEEEecCC-----CeEEE
Q 014125 224 IMSAIAFS-PTHTGMLAIGSYSQ----TSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-----PYILC 292 (430)
Q Consensus 224 ~v~~~~~~-~~~~~~l~~~~~dg----~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-----~~i~i 292 (430)
.+....|+ |++..++++...+| +|+++|+.++ +.+... -......++|+|||+.|+... .+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~-~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVT-KDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEE-ECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEE-ECCCCCCCEEEE
Confidence 57889999 96554444444333 5999999988 632110 111245789999999888776 44 36888
Q ss_pred EeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc---CCcEEEEEcCCCC--e--ecccccccCCeeEEEEcCC
Q 014125 293 WDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ---DGLVHIYDLQTGK--W--ISGFQAAADTVNGFSFHPF 365 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~--~--~~~~~~~~~~v~~~~~~~~ 365 (430)
+++.++......+... ........+.|+|||++|+..+. ...|+++|+.++. . ........+...++.|+..
T Consensus 252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 8887753211112111 22234567899999999876653 3458999998752 3 2222333445556665544
Q ss_pred CcEEEEeeC
Q 014125 366 LPMAASSSG 374 (430)
Q Consensus 366 ~~~l~s~~~ 374 (430)
+.+++.+..
T Consensus 331 ~~l~~~t~~ 339 (751)
T 2xe4_A 331 SHLVILTNE 339 (751)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEeCC
Confidence 444444443
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.25 E-value=8.4e-05 Score=71.23 Aligned_cols=244 Identities=11% Similarity=0.062 Sum_probs=126.3
Q ss_pred CCceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (430)
.....++++.++|+.++.|+. +..+.+||..+....... .......-.+++. .+++
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~----------------~~~~~R~~~s~~~-------~~dg 298 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP----------------DMQVARGYQSSAT-------MSDG 298 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC----------------CCSSCCSSCEEEE-------CTTS
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC----------------CCCccccccceEE-------ecCC
Confidence 333445778889999999985 457999998754321100 0000001111222 3578
Q ss_pred ceEEEEe-CC-----CcEEEEeccCCceeeeeecc-cccccccceEEEEECCCCcEEE-EEc---------CCeEEEEEc
Q 014125 139 CVFASTT-RD-----HPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGY---------NKSVRVFDV 201 (430)
Q Consensus 139 ~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~---------d~~i~v~d~ 201 (430)
++++.|+ .+ ..+.+||..+++....-... ........ ...+..++..++ .+. ...+..||.
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~--~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK--QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT--TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc--cceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence 8888888 34 56999999887644321000 00000000 011122333333 333 346778888
Q ss_pred CCCCCcccccccccCC--CCCCCcceEEEEEcCCCCceEEEecCCC-----------eEEEEEcCCceeeEEe--ecccc
Q 014125 202 HRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----------TSAIYREDNMELLYVL--HGQEG 266 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~v~~~d~~~~~~~~~~--~~~~~ 266 (430)
...... ......... .......-.++.|...++.++++|+.++ .|.+||..+..-.... .....
T Consensus 377 ~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~ 455 (656)
T 1k3i_A 377 SGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455 (656)
T ss_dssp STTCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred CCccee-ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC
Confidence 653211 000000000 0001112344555444677888887543 6888888776544332 11222
Q ss_pred C-eEEEEEccCCCEEEEEecCC-----------CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc
Q 014125 267 G-VTHVQFSRDGNYLYTGGRKD-----------PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ 332 (430)
Q Consensus 267 ~-i~~~~~~~~~~~l~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 332 (430)
. -.+++..|+++.++.++ .+ ..+.+||..+..-. .+..............+.|+|+.++.|+.
T Consensus 456 R~~~~~~~l~~g~i~v~GG-~~~~~~~~~~~~~~~v~~ydp~t~~W~--~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 456 RTFHTSVVLPDGSTFITGG-QRRGIPFEDSTPVFTPEIYVPEQDTFY--KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CBSCEEEECTTSCEEEECC-BSBCCTTCCCSBCCCCEEEEGGGTEEE--ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccCCeEECCCCCEEEECC-cccCcCcCCCCcccceEEEcCCCCcee--ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2 23456678999888887 43 46899998775321 22221222233344566799999999985
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.17 E-value=0.0018 Score=61.18 Aligned_cols=204 Identities=11% Similarity=0.015 Sum_probs=118.1
Q ss_pred CeeeeeeeccccCccCCCCc-eEEEEeCCCcEEEEeccCCce-eeeeecccccccccceEEEEECCCCcEEE-EE-cCCe
Q 014125 120 ESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS 195 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~ 195 (430)
.....++| ++.+. ++++-...+.|..+++..... ...+... ...+..+++.+.+..|+ +. ..+.
T Consensus 40 ~~~~~ld~-------~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-----~~~P~GlAvD~~~~~ly~~d~~~~~ 107 (619)
T 3s94_A 40 EDAAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-----LLSPDGLACDWLGEKLYWTDSETNR 107 (619)
T ss_dssp SCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-----CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEE-------EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-----CCCcCeEEEEecCCEEEEEeCCCCE
Confidence 45667777 43344 444445567788888865432 1122211 12567899998776666 44 5789
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEec-CCCeEEEEEcCCceeeEEeeccccCeEEEEEc
Q 014125 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274 (430)
Q Consensus 196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 274 (430)
|.+.+++..... .+. .........++++|.++.++++-. ..+.|...++............-.....|+++
T Consensus 108 I~v~~~dG~~~~-----~l~---~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald 179 (619)
T 3s94_A 108 IEVSNLDGSLRK-----VLF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD 179 (619)
T ss_dssp EEEEETTSCSCE-----EEE---CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred EEEEECCCCCEE-----EEE---eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE
Confidence 999998753211 111 112234678999995565555542 24678777776443333332233467899999
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
+++..|+.+....+.|..+|+....... ... ........+++..+ ...++-...+.|...|..+++...
T Consensus 180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~-~~~---~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 180 YEEQKLYWADAKLNFIHKSNLDGTNRQA-VVK---GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp TTTTEEEEEETTTCCEEEESSSCCEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred ccCCEEEEEeCCCCeEEEecCCCCccEE-EEe---CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 9888888887677899999997653322 111 11222345666654 444444566789999988776443
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.14 E-value=0.0061 Score=57.70 Aligned_cols=218 Identities=10% Similarity=0.023 Sum_probs=136.5
Q ss_pred CCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCCCCCCc
Q 014125 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (430)
Q Consensus 146 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (430)
....|+..++.+......+.... ...+..++|++.+..|+ +. .++.|..++++.... ... . .....
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~----~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~--~~v--~----~~g~~ 80 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTG----VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL--EHV--V----EFGLD 80 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE--E----CSSCS
T ss_pred eCCcEEEEECCCCCcceEEEcCC----CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc--EEE--E----eCCCC
Confidence 45679999998765433332211 12677999999877776 54 678899888864321 111 1 11113
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEec-CCCeEEEEeCCCCceEE
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRKAVQVV 302 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~i~d~~~~~~~~ 302 (430)
....+++.+.+++++++-...+.|.+.++........+...-.....|+++|....|+.+.. ..+.|...++.......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 45678888767778888788899999998754433233233345789999997667777652 25688888887654322
Q ss_pred EEeecccCCccceEEEEEcCCCCEEEEE-ccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeec
Q 014125 303 YKLYRSSEHTNQRILFDIEPSGRHLGTG-GQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 303 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
+. ........+++++++..|..+ ...+.|..+|++.... ..+........++++.. +.+.++-...+.|..-
T Consensus 161 --l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 161 --LV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp --EE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred --EE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 11 134567889999976666555 4567899999875443 33333334456777765 4444444445555554
Q ss_pred C
Q 014125 382 D 382 (430)
Q Consensus 382 ~ 382 (430)
+
T Consensus 234 d 234 (628)
T 4a0p_A 234 N 234 (628)
T ss_dssp E
T ss_pred E
Confidence 3
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.13 E-value=0.0018 Score=54.88 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=118.6
Q ss_pred EEEEECCCCcEEE-EE-cCCeEEEEEcCCCCCcccccccccCCC--CCCCcceEEEEE---cCCCCceEEEec-------
Q 014125 177 FSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK--EGQAGIMSAIAF---SPTHTGMLAIGS------- 242 (430)
Q Consensus 177 ~~~~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~---~~~~~~~l~~~~------- 242 (430)
-++.|++....+. ++ ..+.|..|+...+.. ... .+.... ......+..+.| .| .+.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~--~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH--FNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCE--EEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeE--EEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3789987555554 55 789999999864211 111 111100 111224689999 68 466666543
Q ss_pred ------CCCeEEEEEcC---CceeeEEee--ccc-----------cCeEEEEEccCCCEEEEEecCC-CeEEEEeCCCCc
Q 014125 243 ------YSQTSAIYRED---NMELLYVLH--GQE-----------GGVTHVQFSRDGNYLYTGGRKD-PYILCWDLRKAV 299 (430)
Q Consensus 243 ------~dg~v~~~d~~---~~~~~~~~~--~~~-----------~~i~~~~~~~~~~~l~~~~~~d-~~i~i~d~~~~~ 299 (430)
.+..|..||+. +++.+.... ... .....++..++|+..++.+ .. +.|...+.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s-~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA-LGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE-ESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC-CCCCeEEEEeCCCCE
Confidence 26779999999 777665544 111 2478999999999887777 66 777777766442
Q ss_pred eEEEEeecc--cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe--ecccc--cc---cCCeeEE-EEcCCCcE-
Q 014125 300 QVVYKLYRS--SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW--ISGFQ--AA---ADTVNGF-SFHPFLPM- 368 (430)
Q Consensus 300 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~---~~~v~~~-~~~~~~~~- 368 (430)
... ..... .......+.++++|+|..|++....|.+..+|+.+... +. .. +. -.....| .--.+|+.
T Consensus 171 ~~~-~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 171 VST-FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEE-EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred Eee-eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEE
Confidence 221 11111 12223466899999999888887799999999884322 11 11 21 1123443 33346776
Q ss_pred EEEeeCCceeeec
Q 014125 369 AASSSGHRRFPVD 381 (430)
Q Consensus 369 l~s~~~d~~~~vw 381 (430)
|++....+.+.+-
T Consensus 249 lV~~~~~~~~~l~ 261 (334)
T 2p9w_A 249 LVGARAPYAISFR 261 (334)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 5555556655554
No 298
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.12 E-value=0.00068 Score=58.79 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCCcEEEEeccCCc-eeeeeeccc--ccccccceEEEEECC--CCc--EEEEE---cCCeEEEEEcCCCCCccccccccc
Q 014125 146 RDHPIHLWDATTGL-LRCTYRAYD--AVDEITAAFSVAFNP--TGT--KIFAG---YNKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 146 ~dg~i~vwd~~~~~-~~~~~~~~~--~~~~~~~v~~~~~~~--~~~--~l~~~---~d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
.+|.|.++|+.+.. ....+.... ..........+.+.+ ++. ++++. .+..|.+|+++..+..........
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 122222211 011122556677655 343 33443 257888998876544433333332
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEec-----------------CCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGS-----------------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 278 (430)
. ..-...+.+.+.+ .+.++++.. ..|.|..+|.. +.. .+...-...+.++|+||++
T Consensus 161 g---~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 161 H---KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-VVAEGFDFANGINISPDGK 233 (355)
T ss_dssp C---TTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-EEEEEESSEEEEEECTTSS
T ss_pred c---CCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-EeecCCcccCcceECCCCC
Confidence 2 1234578899998 555666543 13556666653 322 2222334578999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCceEE-EEeecccCCccceEEEEEcC-CCCEEEEEccC-CcEEEEEcC
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVV-YKLYRSSEHTNQRILFDIEP-SGRHLGTGGQD-GLVHIYDLQ 342 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~vwd~~ 342 (430)
.|+++....+.|..|++....... .... ......-.+++++ +|++.+++..+ +.|..|+..
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEEEeCCCCeEEEEEECCCCcEecCEEE---eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 999888678999999987432221 1122 1235567789999 58887766544 344444443
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.005 Score=55.83 Aligned_cols=261 Identities=10% Similarity=0.062 Sum_probs=137.4
Q ss_pred eeEEEECcC-C-ceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 63 LKGIKWSPD-G-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 63 v~~~~~sp~-~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
...|+|+|. . +++++-...+.|++.|+.++.+....... ...-.....++|......+++++..
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~--------------~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN--------------TIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--------------TSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--------------ccccCCCcEEEEeecccccCCCCCE
Confidence 568999983 4 44444444467888888765332111000 0011245666663333344668886
Q ss_pred EEEEeCCC-c------EEEEeccC-Ccee-----eeeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcC---
Q 014125 141 FASTTRDH-P------IHLWDATT-GLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH--- 202 (430)
Q Consensus 141 l~~~~~dg-~------i~vwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~v~d~~--- 202 (430)
|+++...+ . |.+++... +... ..+... .....++++|++..|+ +. .++.|..+|+.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC------CCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence 66665543 2 55665443 2221 122211 1445789999655544 55 67889999987
Q ss_pred ----CCCC--cc-cc----cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcC--Ccee--eEEeecc---
Q 014125 203 ----RPGR--DF-EK----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMEL--LYVLHGQ--- 264 (430)
Q Consensus 203 ----~~~~--~~-~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~--~~~~--~~~~~~~--- 264 (430)
.+.. +. .. ...+. ..+.......++|+|++..++++-+....|+.++.. .+.. ...+-+.
T Consensus 281 ~~~~tg~~~tp~~~~~~g~~~~l~--~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNPNTFKQLF--TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ 358 (496)
T ss_dssp HHHHTTCCCCCBGGGCTTTEEEEE--ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred ccccCceeecccccccccccceeE--ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence 3221 00 00 00110 012234467999999554456666778889996653 3321 1122111
Q ss_pred c------------cCeE-EEEEc-------cCCCEEEEEecCCCeEEEEeCCCCceEEEEeeccc----------C----
Q 014125 265 E------------GGVT-HVQFS-------RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSS----------E---- 310 (430)
Q Consensus 265 ~------------~~i~-~~~~~-------~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~---- 310 (430)
. .... .++.. +++. |+++....+.|+.++. ++ ......-... +
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCE
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCC
Confidence 0 1233 34443 3444 5555547889999984 33 2222211100 1
Q ss_pred ------CccceEEEEEcCC-CCEEEEEccCCcEEEEEcCCCCeec
Q 014125 311 ------HTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 311 ------~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
.-.....++++++ |.++++=..+.+|+.+++.....+.
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1234678999986 7666666677889999887655443
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.03 E-value=0.0003 Score=59.58 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eec----cc--cCeEEEEE---ccCCCEEEEEec---------
Q 014125 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHG----QE--GGVTHVQF---SRDGNYLYTGGR--------- 285 (430)
Q Consensus 225 v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~----~~--~~i~~~~~---~~~~~~l~~~~~--------- 285 (430)
..++.|++..+.++++.-..++|..||...+..... +.. .. ..+..|.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 456789885565666666899999999975543322 221 01 13578999 688777665330
Q ss_pred ---CCCeEEEEeCC---CCceEEEEeeccc--C-------CccceEEEEEcCCCCEEEEEccC-CcEEEEEcCCCCeecc
Q 014125 286 ---KDPYILCWDLR---KAVQVVYKLYRSS--E-------HTNQRILFDIEPSGRHLGTGGQD-GLVHIYDLQTGKWISG 349 (430)
Q Consensus 286 ---~d~~i~i~d~~---~~~~~~~~~~~~~--~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~ 349 (430)
.+..|..||+. +++.....-.... + .......++..++|+..++++.. +.|...+.+.. .+..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 26789999998 5544432221100 0 12347889999999999988888 87777776633 2222
Q ss_pred cc------cccCCeeEEEEcCCCcEEEEeeCCceeeecCCC
Q 014125 350 FQ------AAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE 384 (430)
Q Consensus 350 ~~------~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~ 384 (430)
+. ...-..+.|+++|++.+|++....+.+...|..
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 21 111246799999999988888767777766544
No 301
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.95 E-value=0.0021 Score=64.90 Aligned_cols=212 Identities=11% Similarity=0.142 Sum_probs=127.9
Q ss_pred CCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
+|..+.+|.-. ..++.|+|+++...+..+.... +|.-..|-.+. .|+--.+..|.-|++.....+.+.+...
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------~VvfWkWis~~-~l~lVT~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCC------CceEEEecCCC-eeEEEcCCeEEEeccCCCCccHHHHhcc
Confidence 45555666554 6789999999988777766544 67777886554 4443456789999997543333322211
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEec------CCCeEEEEEcCCceeeEEeeccccCeEEEEEc--cCCCEEEEEec-
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFS--RDGNYLYTGGR- 285 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~- 285 (430)
. .+. ...|..-..+++...++++|- -.|.+.+|+... +..+.+.+|.+....+... +....|++-+.
T Consensus 146 ~-~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 146 S-SLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred h-hcc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 1 111 345666777775555555553 357889998763 4445667776655444442 22223433220
Q ss_pred --CCCeEEEEeCCCC---ce-----EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccC
Q 014125 286 --KDPYILCWDLRKA---VQ-----VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAAD 355 (430)
Q Consensus 286 --~d~~i~i~d~~~~---~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 355 (430)
..+.++|.++... .. .....+.......-..++..++.-..+..-+.-|.|+++|+.++.++..-+-...
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~ 301 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 301 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC
Confidence 2378999988543 11 1111111122334455677787777788888999999999999988776554444
Q ss_pred Cee
Q 014125 356 TVN 358 (430)
Q Consensus 356 ~v~ 358 (430)
+|-
T Consensus 302 ~iF 304 (1630)
T 1xi4_A 302 TIF 304 (1630)
T ss_pred ceE
Confidence 443
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.95 E-value=0.0081 Score=52.46 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=117.5
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCC---CcEEE-EEc-C--
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---GTKIF-AGY-N-- 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~-~~~-d-- 193 (430)
.-+.++| .|+|++++ +..+|.|.+++ +++...................++++|+ +..|+ +.. .
T Consensus 32 ~P~~ia~-------~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 32 VPWALAF-------LPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CEEEEEE-------CTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CceEEEE-------cCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 3456777 77888554 45669999998 4432211111111111236789999998 44554 332 2
Q ss_pred ---CeEEEEEcCCCCC-cccc-cccccC-CCCCCCcceEEEEEcCCCCceEEEecC-------------CCeEEEEEcCC
Q 014125 194 ---KSVRVFDVHRPGR-DFEK-YSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYREDN 254 (430)
Q Consensus 194 ---~~i~v~d~~~~~~-~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~~~d~~~ 254 (430)
+.|..++...... ..+. +..+.. ....| ....++|.|++ .++++.+. .|.|.-++...
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 6787887753210 0001 111110 01122 23589999955 55555321 25666666543
Q ss_pred c-------------eeeEEeeccccCeEEEEEcc-CCCEEEEEecCCCe--------EEEEeCCCCce------------
Q 014125 255 M-------------ELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDPY--------ILCWDLRKAVQ------------ 300 (430)
Q Consensus 255 ~-------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~--------i~i~d~~~~~~------------ 300 (430)
. .......++ .....++|+| ++..+++-. ..+. |.+.. .+..
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGND 254 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE-CC------CCCEEEEEC--TTCBCCTTTCCSCCCC
T ss_pred CCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCC
Confidence 1 111111123 2357789999 566444433 2332 33322 1110
Q ss_pred --EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe------ecccccccCCeeEEEEcCCCcEEEEe
Q 014125 301 --VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW------ISGFQAAADTVNGFSFHPFLPMAASS 372 (430)
Q Consensus 301 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~ 372 (430)
........ .+......++| .+|.++++.-..+.|...++..... ...+......+..+++.|+|.+.++.
T Consensus 255 ~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 255 PRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 00000010 12234556777 4566666666667788887764431 11221223578999999999877766
Q ss_pred e
Q 014125 373 S 373 (430)
Q Consensus 373 ~ 373 (430)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.94 E-value=0.014 Score=55.08 Aligned_cols=185 Identities=11% Similarity=0.008 Sum_probs=112.3
Q ss_pred EEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeecccc
Q 014125 187 KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (430)
Q Consensus 187 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 266 (430)
+|+.+..+.|+..++......... + .. ..-..+..++|++.++.++++-...+.|+.+++........+...-.
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~---~--~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIV---L--QL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEE---C--CC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEEcccceEEEecCCCccceeE---E--ec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence 455555667777777653321100 0 00 11234778999986666666666788999999876444333333334
Q ss_pred CeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEcc--CCcEEEEEcCCC
Q 014125 267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQ--DGLVHIYDLQTG 344 (430)
Q Consensus 267 ~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~ 344 (430)
....+++.+.+..|+.+....+.|.+.++....... +. ...-.....++++|...+|+.... .+.|...+++..
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~--l~--~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI--LI--SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EE--CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE--EE--ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 677899988777777777578899999988654322 21 223456789999997545544432 356777777633
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeC-Cceeeec
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSG-HRRFPVD 381 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~~~vw 381 (430)
.........-...++|+++++...|..+.. .+.|...
T Consensus 469 ~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 469 DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 222222223346789999987766665543 3444443
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.90 E-value=0.0098 Score=51.93 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=120.7
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCc-eeeeeecccccccccceEEEEECCC---CcEEE-EEc---
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPT---GTKIF-AGY--- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~-~~~--- 192 (430)
..+.++| .|+|++ +++..+|.|++++ .+++ .+..+.. ..........++++|+ +..|. +..
T Consensus 30 ~P~~ia~-------~pdG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v--~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 30 VPWSIAP-------LGGGRY-LVTERPGRLVLIS-PSGKKLVASFDV--ANVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp CEEEEEE-------EETTEE-EEEETTTEEEEEC-SSCEEEEEECCC--CCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCeEEEE-------cCCCeE-EEEeCCCEEEEEe-CCCceEeeccce--eecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 4566777 667874 4456669999997 3454 1111110 0111235789999998 44444 332
Q ss_pred -C----CeEEEEEcCCCCCccccccccc---CCCCCCCcceEEEEEcCCCCceEEEecC-------------CCeEEEEE
Q 014125 193 -N----KSVRVFDVHRPGRDFEKYSTLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYR 251 (430)
Q Consensus 193 -d----~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~~~d 251 (430)
+ +.|..|+.............+. .....| ....++|.|++ .++++.+. .|.|.-++
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 2 5677777654311111111110 011122 24678999954 55555322 25666666
Q ss_pred cCCc--------eeeEEeeccccCeEEEEEcc-CCCEEEEEecCCC--eEEEEeCCC--------Cce----EEEEeecc
Q 014125 252 EDNM--------ELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDP--YILCWDLRK--------AVQ----VVYKLYRS 308 (430)
Q Consensus 252 ~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~--~i~i~d~~~--------~~~----~~~~~~~~ 308 (430)
.... .......++. ....++|+| ++..+++-...+. .|.+..... ... ........
T Consensus 176 ~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 176 EEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp TTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 5422 0111112332 346899999 5664444331221 233322110 000 00011111
Q ss_pred cCCccceEEEEEc-------CCCCEEEEEccCCcEEEEEcCCC-Cee--ccc-ccccCCeeEEEEcCCCcEEEEee
Q 014125 309 SEHTNQRILFDIE-------PSGRHLGTGGQDGLVHIYDLQTG-KWI--SGF-QAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 309 ~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~vwd~~~~-~~~--~~~-~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.........++|. .+|.++++.-..+.|...++... +.. ..+ ......+..+++.|+|.+.++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0123456778883 46777777667778888888753 322 122 22235789999999998777654
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.89 E-value=0.008 Score=52.52 Aligned_cols=239 Identities=8% Similarity=-0.000 Sum_probs=119.3
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc--ccccccceEEEEECCC---CcEEE-EE-c-
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPT---GTKIF-AG-Y- 192 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~-~~-~- 192 (430)
..+.++| .|+|+.|+++...|.|++++.. +.....+.... ..........++++|+ +..|. +. .
T Consensus 19 ~P~~i~~-------~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~ 90 (353)
T 2g8s_A 19 HPWALAF-------LPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV 90 (353)
T ss_dssp SEEEEEE-------CSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred CcEEEEE-------cCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence 3456666 7788834555678999999853 33221111110 0011225678999996 44444 32 2
Q ss_pred ------CCeEEEEEcCCCCCcccccccccCC-----CCCCCcceEEEEEcCCCCceEEEecC-------------CCeEE
Q 014125 193 ------NKSVRVFDVHRPGRDFEKYSTLKGN-----KEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSA 248 (430)
Q Consensus 193 ------d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~v~ 248 (430)
...|..|++............+... ...| ....++|.|++ .++++.+. .|.|.
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEE
Confidence 2356666665432221111111101 1122 23569999955 45554322 25677
Q ss_pred EEEcCCce------------eeEEe-eccccCeEEEEEccCCCEEEEEe-cCCCeEEEEeCCCCceE-------------
Q 014125 249 IYREDNME------------LLYVL-HGQEGGVTHVQFSRDGNYLYTGG-RKDPYILCWDLRKAVQV------------- 301 (430)
Q Consensus 249 ~~d~~~~~------------~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~i~d~~~~~~~------------- 301 (430)
-++....- ....+ .++ .....++|+|....|+++. ..++.=.|.-+..+...
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 77765320 11111 123 2467899999433444443 12211122222111100
Q ss_pred --------------EEEeecccCCccceEEEEEcC-------CCCEEEEEccCCcEEEEEcCCCCeecc---cccccCCe
Q 014125 302 --------------VYKLYRSSEHTNQRILFDIEP-------SGRHLGTGGQDGLVHIYDLQTGKWISG---FQAAADTV 357 (430)
Q Consensus 302 --------------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~v 357 (430)
...... ..+...+..+.|.. +|.++++.-..+.|...++..++.+.. +......+
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~-~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFY-WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEE-ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred CccCcccCCCCCCccCCeEE-eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence 000000 01223566677753 466777766778888888876543322 12223478
Q ss_pred eEEEEcCCCcEEEEe
Q 014125 358 NGFSFHPFLPMAASS 372 (430)
Q Consensus 358 ~~~~~~~~~~~l~s~ 372 (430)
..+++.|+|.+.++.
T Consensus 326 ~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEECCCCcEEEEE
Confidence 999999999877654
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.0034 Score=53.74 Aligned_cols=186 Identities=15% Similarity=0.204 Sum_probs=109.0
Q ss_pred cEEE-EEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC---CCc---eEEE-ecC--CCeEEEEEcC-C
Q 014125 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTG---MLAI-GSY--SQTSAIYRED-N 254 (430)
Q Consensus 186 ~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~-~~~--dg~v~~~d~~-~ 254 (430)
.+++ +...+-+.+||+.. .... .+ .. +.+..+..-|. ++. ++++ ... +++|.+|++. .
T Consensus 41 s~ii~t~k~~gL~Vydl~G--~~l~---~~----~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG--KMLH---SY----NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (355)
T ss_dssp CEEEEEETTTEEEEEETTS--CEEE---EE----CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEcCCC--cEEE---Ec----cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC
Confidence 4444 44778999999943 2111 11 11 34566665551 111 2233 333 5789999773 2
Q ss_pred ceeeEEeec------cc-cCeEEEEE--ccC-CC-EEEEEecCCCeEEEEeCCC---CceEEEEeecccCCccceEEEEE
Q 014125 255 MELLYVLHG------QE-GGVTHVQF--SRD-GN-YLYTGGRKDPYILCWDLRK---AVQVVYKLYRSSEHTNQRILFDI 320 (430)
Q Consensus 255 ~~~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~ 320 (430)
...+..+.. .. ..+..+++ +|. ++ ++++.. .+|.+..|++.. +.... +..+.....+.+-.|..
T Consensus 110 ~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~-~lVR~f~lgsq~Egcvv 187 (355)
T 3amr_A 110 NGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISG-KKVRAFKMNSQTEGMAA 187 (355)
T ss_dssp TCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEE-EEEEEEECSSCEEEEEE
T ss_pred CCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccc-eEEEEecCCCCcceEEE
Confidence 223444421 11 45677888 774 44 577777 889999999843 21111 11111223457888999
Q ss_pred cCCCCEEEEEccCCcEEEEEcC-----CCCeecccc-cc-cCCeeEEEE--cCCCc-EEEEee-CCceeeecCCC
Q 014125 321 EPSGRHLGTGGQDGLVHIYDLQ-----TGKWISGFQ-AA-ADTVNGFSF--HPFLP-MAASSS-GHRRFPVDDFE 384 (430)
Q Consensus 321 ~~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~s~~-~d~~~~vw~~~ 384 (430)
.+....|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+. .++++ +|++++ .+..+.||+.+
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9988999999998777777755 344554442 22 236888888 45555 555555 57788888764
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.88 E-value=0.01 Score=51.26 Aligned_cols=231 Identities=9% Similarity=0.030 Sum_probs=120.2
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEE
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~ 199 (430)
..+.++.+ .+.+..++ ++..|.| +.....++.-....... ......+.++.+++ +..++++..+.|.
T Consensus 36 ~~~~~v~~-------~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~-~~~~~~~~~i~~~~-~~~~~~g~~g~i~-- 102 (327)
T 2xbg_A 36 ATILDMSF-------IDRHHGWL-VGVNATL-METRDGGQTWEPRTLVL-DHSDYRFNSVSFQG-NEGWIVGEPPIML-- 102 (327)
T ss_dssp SCEEEEEE-------SSSSCEEE-EETTTEE-EEESSTTSSCEECCCCC-SCCCCEEEEEEEET-TEEEEEEETTEEE--
T ss_pred CcEEEEEE-------CCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCC-CCCCccEEEEEecC-CeEEEEECCCeEE--
Confidence 46778877 44455566 4556654 23333343222221110 01122677888876 5556677677443
Q ss_pred EcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE-eeccccCeEEEEEccCCC
Q 014125 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 278 (430)
.....+..+...... ......+..+.+.+ .+.+++++. +|.|.. ....++.-.. .......+..+++.|++.
T Consensus 103 ~S~DgG~tW~~~~~~----~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~ 175 (327)
T 2xbg_A 103 HTTDGGQSWSQIPLD----PKLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE 175 (327)
T ss_dssp EESSTTSSCEECCCC----TTCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC
T ss_pred EECCCCCCceECccc----cCCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc
Confidence 333444444332211 11223466777765 444555554 554432 1222322222 223456789999999988
Q ss_pred EEEEEecCCCeEE-EEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccccc----c
Q 014125 279 YLYTGGRKDPYIL-CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQA----A 353 (430)
Q Consensus 279 ~l~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~ 353 (430)
+++++. +|.+. -.|-. +.. ..... ......+..+.+.++++.++. +.+|.+++.+.+.++.-..+.. +
T Consensus 176 ~~~~g~--~G~~~~S~d~g-G~t-W~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~ 248 (327)
T 2xbg_A 176 YVAVSS--RGSFYSTWEPG-QTA-WEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRN 248 (327)
T ss_dssp EEEEET--TSSEEEEECTT-CSS-CEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSC
T ss_pred EEEEEC--CCcEEEEeCCC-CCc-eeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccC
Confidence 776654 45444 34421 111 11111 234457788999998876654 4578887775332333222221 2
Q ss_pred cCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 354 ADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 354 ~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
...+.++.+.+++.+++.+. ++.+
T Consensus 249 ~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 249 SVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp CSCEEEEEESSSSCEEEEES-TTCE
T ss_pred CcceEEEEecCCCEEEEEeC-CCeE
Confidence 23588999998877766654 4544
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.82 E-value=0.0092 Score=51.72 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=113.6
Q ss_pred EEEECCCCcEEEEE-------------cCCeEEEEEcCCCCCcccccccccCC-CCCCCcceEEEEEcCC--CC-ceEEE
Q 014125 178 SVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEKYSTLKGN-KEGQAGIMSAIAFSPT--HT-GMLAI 240 (430)
Q Consensus 178 ~~~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~-~~l~~ 240 (430)
.+...|+|..++++ .+|.|.++|...+......+. +... ..........+.+.++ +. .++++
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 56667777666654 589999999875433222211 1110 1122345667777552 33 35555
Q ss_pred ecC--CCeEEEEEcCCc--e--eeEEeecc-ccCeEEEEEccCCCEEEEEec----------------CCCeEEEEeCCC
Q 014125 241 GSY--SQTSAIYREDNM--E--LLYVLHGQ-EGGVTHVQFSRDGNYLYTGGR----------------KDPYILCWDLRK 297 (430)
Q Consensus 241 ~~~--dg~v~~~d~~~~--~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~----------------~d~~i~i~d~~~ 297 (430)
-.. +.+|.+|++... . .+..+.+. -...+.+.+.++|.+.++... ..|.|.-+|...
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 444 567888876543 1 22333322 235789999999986665430 124555555531
Q ss_pred CceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcEEEEEcCC-CCe--ecccccccCCeeEEEEcC-CCcEEEEe
Q 014125 298 AVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLVHIYDLQT-GKW--ISGFQAAADTVNGFSFHP-FLPMAASS 372 (430)
Q Consensus 298 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~ 372 (430)
.. .. ...-...+.++|+||++.|+.+. ..+.|+.|++.. ++. ...+ ...+....++..+ +|++.+++
T Consensus 213 ---~~-~~---~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 213 ---VR-VV---AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp ---CE-EE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred ---EE-Ee---ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence 11 11 11234467899999998776654 568899999863 332 1223 2245678899999 59988877
Q ss_pred eCC-ceeeecCCC
Q 014125 373 SGH-RRFPVDDFE 384 (430)
Q Consensus 373 ~~d-~~~~vw~~~ 384 (430)
..+ +.+..++.+
T Consensus 285 ~~~g~~v~~~~P~ 297 (355)
T 3sre_A 285 HPNGMRIFFYDAE 297 (355)
T ss_dssp ESCHHHHHSCCTT
T ss_pred cCCceEEEEECCC
Confidence 644 344445443
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.79 E-value=0.043 Score=55.75 Aligned_cols=190 Identities=12% Similarity=0.117 Sum_probs=91.3
Q ss_pred CCceeEEEECcC------CceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccC
Q 014125 60 NNFLKGIKWSPD------GSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (430)
Q Consensus 60 ~~~v~~~~~sp~------~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (430)
.+.|.|+++.|. ++++|.|.. |++|+|+++++.+..... .........+++....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~----------------~L~~~~~p~si~l~~~-- 614 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE----------------MLGGEIIPRSILMTTF-- 614 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE----------------ECCSSCCEEEEEEEEE--
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE----------------ECCCCCCCcEEEEEEe--
Confidence 457999999863 369999986 999999999853221100 0111112222322110
Q ss_pred ccCCCCceEEEEeCCCcEEEEec--cCCceeeeeecccccccccceEEEEECCCCc-EEEEEcCCeEEEEEcCCCCCccc
Q 014125 133 ASDPTSCVFASTTRDHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAGYNKSVRVFDVHRPGRDFE 209 (430)
Q Consensus 133 ~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~v~d~~~~~~~~~ 209 (430)
....+|..|-.||.+..+.+ .+|.....-...-+ ..++.-..+...+. .+++..+....+|.-+. . +.
T Consensus 615 ---~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG---~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~--~-l~ 685 (1158)
T 3ei3_A 615 ---ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG---TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH--K-LV 685 (1158)
T ss_dssp ---TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC---SSCCEEEEEESSSCEEEEEESSSCEEEEESSS--S-EE
T ss_pred ---CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC---CCceEEEEEeeCCceeEEEECCCCEEEEEcCC--c-eE
Confidence 12357888999998765554 34444322111111 11343333433332 33344455544544321 1 10
Q ss_pred ccccccCCCCCCCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCce--eeEEeeccccCeEEEEEccCCCEEEEEe
Q 014125 210 KYSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+..+.. ...-....|+... ..-++..+ ++.++|..+.+.. ..+++. -...+..++++|..+.++++.
T Consensus 686 -~s~l~~-----~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 686 -FSNVNL-----KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp -EEEBSS-----SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEE
T ss_pred -EeccCh-----HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEE
Confidence 111100 0111233454321 22344333 4568888765432 222332 335677888888777655443
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.78 E-value=0.016 Score=50.59 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=118.7
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..-..|+|.|+|+++++ ..+|.|++++. ++. ..+... . ...........+++.|.. ..++.+
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~~~~----------~-v~~~g~~g~~gia~~pdf---~~~g~l 90 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLVASF----------D-VANVGEAGLLGLALHPEF---PKKSWV 90 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEEEEC----------C-CCCSTTCSEEEEEECTTT---TTSCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEeecc----------c-eeecCCCceeeEEeCCCC---CcCCEE
Confidence 34678999999986555 55689998863 221 000000 0 011112356778884421 112444
Q ss_pred EEEEeC---C----CcEEEEeccCC--ce---eeeeec-ccccccccceEEEEECCCCcEEEEEcC--------------
Q 014125 141 FASTTR---D----HPIHLWDATTG--LL---RCTYRA-YDAVDEITAAFSVAFNPTGTKIFAGYN-------------- 193 (430)
Q Consensus 141 l~~~~~---d----g~i~vwd~~~~--~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d-------------- 193 (430)
+++-+. + ..|..|+...+ .. ...+.. .....| ....++|.|+|.++++..+
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCS
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCC
Confidence 444332 3 56777776544 11 111111 111111 3457999999987765322
Q ss_pred CeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC---eEEEEEcCC----------------
Q 014125 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDN---------------- 254 (430)
Q Consensus 194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~v~~~d~~~---------------- 254 (430)
+.|.-++.+..-..-..+........++. ....++|+|+.+.++++-.... .|.+.....
T Consensus 169 G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 169 GKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp SEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred eEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence 34444444321000000000000001221 2457889985555555432221 233322110
Q ss_pred ceeeEEeeccccCeEEEEEc-------cCCCEEEEEecCCCeEEEEeCCCCceEE--EEeecccCCccceEEEEEcCCCC
Q 014125 255 MELLYVLHGQEGGVTHVQFS-------RDGNYLYTGGRKDPYILCWDLRKAVQVV--YKLYRSSEHTNQRILFDIEPSGR 325 (430)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 325 (430)
..++..+.........++|. .+|.++++.- ..+.|...++....... ..+. ......+..+++.|+|.
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~-~~~~v~~~~~~~~g~~~~~~~~~--~~~~~rp~~v~~~pDG~ 324 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL-RGSMLAAVNFGDNMEVRKISTFF--KNVFGRLRDVVIDDDGG 324 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET-TTTEEEEEEECGGGCEEEEEEEC--TTTSCCEEEEEECTTSC
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc-CCCEEEEEEECCCCcccceeeec--cCCCCCeeEEEECCCCc
Confidence 01222331112357788884 4565555544 77889888887542221 1111 12245688999999997
Q ss_pred EEEEEc
Q 014125 326 HLGTGG 331 (430)
Q Consensus 326 ~l~~~~ 331 (430)
+.++..
T Consensus 325 lyv~~~ 330 (354)
T 3a9g_A 325 ILISTS 330 (354)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666553
No 311
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.67 E-value=0.022 Score=49.10 Aligned_cols=241 Identities=11% Similarity=0.021 Sum_probs=123.4
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc-ccccccceEEEEECCC---CcEEEEE----
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAFNPT---GTKIFAG---- 191 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~---- 191 (430)
..-+.++| .|+|.++++-...|.|++++...++......... ..........|+++|+ +..|..+
T Consensus 32 ~~P~~ia~-------~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 32 NSPWGLAP-------LPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCceEEEE-------cCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34567777 7788877776558999999876665422211110 0112236789999995 3444432
Q ss_pred cCCeEEEEEcCCCCC---cc---ccc-ccccCCCCCCCcceEEEEEcCCCCceEEEec-------------CCCeEEEEE
Q 014125 192 YNKSVRVFDVHRPGR---DF---EKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-------------YSQTSAIYR 251 (430)
Q Consensus 192 ~d~~i~v~d~~~~~~---~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------~dg~v~~~d 251 (430)
.++.|.-|....... .. +.+ ..+.. ...| ....|.|.|++ .++++.+ ..|.|.-++
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H--~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIH--NGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSC--CCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCc--cCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 345666666654210 11 111 11111 1223 34679999954 5555533 235565555
Q ss_pred cCCc--------e-eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE--------------EEEeecc
Q 014125 252 EDNM--------E-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--------------VYKLYRS 308 (430)
Q Consensus 252 ~~~~--------~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~ 308 (430)
.... . .+.. .+|. ....++|+|+|.+.++-...|+.=.|--+..+... .......
T Consensus 181 ~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~ 258 (347)
T 3das_A 181 PDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW 258 (347)
T ss_dssp TTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred CCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence 5422 1 1111 2343 35689999988755544323332222222221110 0000000
Q ss_pred cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe----ecccccccCCeeEEEEcCCCcEEEEeeC
Q 014125 309 SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW----ISGFQAAADTVNGFSFHPFLPMAASSSG 374 (430)
Q Consensus 309 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 374 (430)
..+......++|. +|..++..-..+.|....+..... ...+.+....+..|+..|+|.++++.+.
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECT
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcC
Confidence 1111345566766 355555555566677777664432 2223334467999999999987777653
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.56 E-value=0.03 Score=48.80 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=63.0
Q ss_pred ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCC---CCceEEEecCC-----Ce
Q 014125 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS-----QT 246 (430)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~ 246 (430)
....++|.|+|+++++..++.|++++ .. . ...+..+. ...........++++|+ ++.++++-... +.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g--~-~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-EG--R-LSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-TT--E-EEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-CC--C-ccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 56689999999988888789999998 22 1 11111111 11222346789999995 45555554433 67
Q ss_pred EEEEEcCCce-----ee-EEee---ccccCeEEEEEccCCCEEEEEe
Q 014125 247 SAIYREDNME-----LL-YVLH---GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 247 v~~~d~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
|..|+..... .+ ..+. ........++|.|+|.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 8888876431 11 1122 1112346899999996555543
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.55 E-value=0.014 Score=49.66 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=95.5
Q ss_pred CCceEEEEe-CC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 014125 137 TSCVFASTT-RD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP 204 (430)
Q Consensus 137 ~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~ 204 (430)
++.+++.|+ .+ ..+.+||+.+++....-..... . .-.+++. .++.+++ +|.+ ..+.+||+.+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r-~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK---R-RYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC---C-BSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh---h-ccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 445666666 33 3688999888764432221111 0 1112222 2455555 4433 46889998764
Q ss_pred CC-cccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeE--EeeccccCeEEEEEccC
Q 014125 205 GR-DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLY--VLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 205 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~ 276 (430)
.. .+.....+.... .....+.+ ++.+++.|+.+ ..+.+||..+.+-.. .+......-..+.+ +
T Consensus 89 ~~~~W~~~~~~p~~r----~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~ 159 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRR----GLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S 159 (301)
T ss_dssp TTCCCEEECCCSSCC----BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T
T ss_pred CCCeeEECCCCCCCc----cceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C
Confidence 30 122222221111 11222233 45677777654 368899987765332 22211112222222 5
Q ss_pred CCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCe
Q 014125 277 GNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKW 346 (430)
Q Consensus 277 ~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 346 (430)
++.++.++ .+ ..+.+||+.+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+.
T Consensus 160 ~~iyv~GG-~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 160 GVIYCLGG-YDGLNILNSVEKYDPHTGHWT--NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TEEEEECC-BCSSCBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CEEEEECC-CCCCcccceEEEEeCCCCcEE--eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 66666665 43 46889998876322 22111111112222332 56777777764 4689999987654
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.40 E-value=0.021 Score=50.13 Aligned_cols=153 Identities=16% Similarity=0.240 Sum_probs=93.5
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccc------
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEK------ 210 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~------ 210 (430)
++..++.+- ++.||.-++..+..-+.+...... ....+..+..+|+|.+|+...+..|.|..+..+......
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i-~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL-VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTC-CCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCccc-ccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 344444432 356777676644333333332100 011567899999999999888899999999743211110
Q ss_pred ----cccccCCCCCCCcceEEEEEcCCCC--ceEEEecCCCeEEEEEcCCc--eeeEEee---------ccccCeEEEEE
Q 014125 211 ----YSTLKGNKEGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDNM--ELLYVLH---------GQEGGVTHVQF 273 (430)
Q Consensus 211 ----~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~--~~~~~~~---------~~~~~i~~~~~ 273 (430)
...+.........+|..+.|+|-+. ..|++-..|+.|++||+... ++. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 0011111111357899999999653 48999999999999998752 222 221 12257889999
Q ss_pred ccCCCEEEE--EecCCCeEEEE
Q 014125 274 SRDGNYLYT--GGRKDPYILCW 293 (430)
Q Consensus 274 ~~~~~~l~~--~~~~d~~i~i~ 293 (430)
.+++-.|++ .. .+|.|+-.
T Consensus 188 g~~~lTLYvl~~t-~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTT-EGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECT-TSCEEEEE
T ss_pred cCCCcEEEEEecC-CCCCEEEE
Confidence 998776666 43 56777654
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.37 E-value=0.15 Score=51.90 Aligned_cols=181 Identities=10% Similarity=0.083 Sum_probs=102.3
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEEEc-----------CCeEEEEEcCCCCCccccccccc
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGY-----------NKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+.|++.|..+.+.+..+..... +....+..+.|..+ ..++++|. .|.|.+|++.. ..++....
T Consensus 807 s~i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~-- 881 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAE-- 881 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEE--
T ss_pred EEEEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEE--
Confidence 3477888777776666554432 22223333445433 35666431 36799999862 12222111
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~ 295 (430)
....+++++++--. + .|++|- ..+|++|++...+.+..-..+-..|..+.....+.++++|. .-..|.++..
T Consensus 882 ---~~v~g~v~al~~~~--g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD-~~~Sv~~~~y 953 (1158)
T 3ei3_A 882 ---KEVKGAVYSMVEFN--G-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGD-LMRSVLLLAY 953 (1158)
T ss_dssp ---EEESSCEEEEEEET--T-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEE-SSBCEEEEEE
T ss_pred ---EEcCCcCEEEeeeC--C-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEE-hhheEEEEEE
Confidence 12346788887543 3 344333 58899999986654431111112233333334577888888 5666666544
Q ss_pred CCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 296 RKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
+........+.. ......++++.+-.+ ..++.+..+|.+.+...+.
T Consensus 954 ~~~~~~L~~~a~-D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 954 KPMEGNFEEIAR-DFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTTTEEEEEEE-CCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred EcCCCeEEEEEe-ecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 332222223222 445677888888654 4677789999999998764
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.36 E-value=0.019 Score=48.73 Aligned_cols=189 Identities=13% Similarity=0.201 Sum_probs=95.6
Q ss_pred CCceEEEEeCC-----CcEEEEeccCCc---eeeeeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcC
Q 014125 137 TSCVFASTTRD-----HPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~~d-----g~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~v~d~~ 202 (430)
++.+++.|+.+ ..+.+||+.+++ ....-..... ......+.+ ++++++.| .+ ..+.+||+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR---RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC---ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence 45667777654 468999998876 4333221111 011122222 55555543 32 468888876
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeEE--eeccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYV--LHGQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~ 275 (430)
+. .+............ ...+.+ ++.+++.|+.+ ..+.+||+.+.+-... +.........+.+
T Consensus 137 ~~--~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 205 (301)
T 2vpj_A 137 ID--QWSMLGDMQTAREG----AGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-- 205 (301)
T ss_dssp TT--EEEEEEECSSCCBS----CEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CC--eEEECCCCCCCccc----ceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--
Confidence 53 22222222111111 222223 45677777754 4588999887654322 1111111222232
Q ss_pred CCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCC
Q 014125 276 DGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGK 345 (430)
Q Consensus 276 ~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 345 (430)
+++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG-~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDHIYVVGG-FDGTAHLSSVEAYNIRTDSWT--TVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECC-BCSSSBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEeC-CCCCcccceEEEEeCCCCcEE--ECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 555666665 43 46899999876432 22111111122222333 56777777765 357888887655
Q ss_pred e
Q 014125 346 W 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 281 W 281 (301)
T 2vpj_A 281 W 281 (301)
T ss_dssp E
T ss_pred E
Confidence 4
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.33 E-value=0.048 Score=46.51 Aligned_cols=189 Identities=12% Similarity=0.148 Sum_probs=94.2
Q ss_pred CCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec----C-----CeEEEEEcC
Q 014125 137 TSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY----N-----KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~----d-----~~i~v~d~~ 202 (430)
++.+++.|+.+ ..+.+||+.+++....-..... . .-.+++.. ++.+++. |. + +.+.+||+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-R---SGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-C---BSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc-c---ccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 45566666642 3688999888765443211111 0 11122222 4555553 33 2 468888886
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeEE--eeccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYV--LHGQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~ 275 (430)
+. .+.....+... ......+.+ ++.+++.|+.+ ..+.+||..+.+-... +......-..+.+
T Consensus 99 ~~--~W~~~~~~p~~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 99 TN--QWSPCAPMSVP----RNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-- 167 (308)
T ss_dssp TT--EEEECCCCSSC----CBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred CC--eEeECCCCCcC----ccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence 53 22222211111 111222333 45677777643 4688899887643222 1111112222233
Q ss_pred CCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCC
Q 014125 276 DGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGK 345 (430)
Q Consensus 276 ~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 345 (430)
+++.++.++ .+ ..+.+||+.+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGG-FDGTNRLNSAECYYPERNEWR--MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECC-BCSSCBCCCEEEEETTTTEEE--ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeC-CCCCCcCceEEEEeCCCCeEe--eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 555555555 43 46889998776322 22111111222222333 56777777764 459999998765
Q ss_pred e
Q 014125 346 W 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 243 W 243 (308)
T 1zgk_A 243 W 243 (308)
T ss_dssp E
T ss_pred E
Confidence 4
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.30 E-value=0.027 Score=49.38 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=87.0
Q ss_pred CCeEEEEEcCCceeeEEeecc----ccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE----------EEEeeccc
Q 014125 244 SQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV----------VYKLYRSS 309 (430)
Q Consensus 244 dg~v~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~ 309 (430)
++.||.-++......+.+... ...|..+..+|+|.+|+..+ +..|.|-.+..+... ....+...
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence 467777777644444444432 23688899999999999987 778999888732110 00111111
Q ss_pred ----CCccceEEEEEcCC---CCEEEEEccCCcEEEEEcCCCC--eecccc---------cccCCeeEEEEcCCCcEEEE
Q 014125 310 ----EHTNQRILFDIEPS---GRHLGTGGQDGLVHIYDLQTGK--WISGFQ---------AAADTVNGFSFHPFLPMAAS 371 (430)
Q Consensus 310 ----~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---------~~~~~v~~~~~~~~~~~l~s 371 (430)
....+|..+.|+|- +..|++-..|+.|++||+.... +. .++ .....|.+++|.+++-.|..
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 13577999999996 4689999999999999998522 22 221 12246889999987775555
Q ss_pred ee--CCceee
Q 014125 372 SS--GHRRFP 379 (430)
Q Consensus 372 ~~--~d~~~~ 379 (430)
.+ ..|.|.
T Consensus 197 l~~t~~GDIY 206 (452)
T 3pbp_A 197 LNTTEGGDIF 206 (452)
T ss_dssp EECTTSCEEE
T ss_pred EecCCCCCEE
Confidence 44 556554
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.24 E-value=0.11 Score=46.99 Aligned_cols=113 Identities=14% Similarity=0.296 Sum_probs=57.6
Q ss_pred CeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccccc---ccccceEEEEECCC---CcEEE-EEc
Q 014125 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPT---GTKIF-AGY 192 (430)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~-~~~ 192 (430)
...+.++| .|+|+++++-...+.|++++..+++........... ........|+|+|+ +..|. +..
T Consensus 27 ~~P~~~a~-------~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLW-------GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEE-------cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 34567777 678887766544457888887655543222221111 12236779999995 44444 322
Q ss_pred -------------CCeEEEEEcCCCCCcccccccccC-CCCCCCcceEEEEEcCCCCceEEE
Q 014125 193 -------------NKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAI 240 (430)
Q Consensus 193 -------------d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~ 240 (430)
...|.-++.............+.. ...........|+|.|++ .++++
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~ 160 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYT 160 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEE
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEE
Confidence 235666665432211111111110 001112347899999965 45554
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.23 E-value=0.036 Score=47.10 Aligned_cols=189 Identities=14% Similarity=0.244 Sum_probs=91.9
Q ss_pred CceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC-----CeEEEEEcCCCCCc
Q 014125 138 SCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN-----KSVRVFDVHRPGRD 207 (430)
Q Consensus 138 ~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d-----~~i~v~d~~~~~~~ 207 (430)
+.+++.|+.+ ..+..||+.+.+....-..... . .-.+++.. ++.+++. |.+ ..+.+||..+. .
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~--~ 88 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR-R---CRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKD--Q 88 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC-C---BSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTT--E
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc-c---ccceEEEE-CCEEEEEeCcCCCccccceEEECCCCC--c
Confidence 4455666543 3588899888764433111111 0 11122222 5555553 433 45888887653 2
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC-----eEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEE
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYL 280 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l 280 (430)
+.....+..... ....+.+ ++.+++.|+.++ .+.+||+.+.+-... +.........+.+ +++.+
T Consensus 89 W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 159 (302)
T 2xn4_A 89 WTSVANMRDRRS----TLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLY 159 (302)
T ss_dssp EEEECCCSSCCB----SCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred eeeCCCCCcccc----ceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEE
Confidence 222222211111 1222233 456777777553 578889877653322 1111111222222 55555
Q ss_pred EEEecC------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCe
Q 014125 281 YTGGRK------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKW 346 (430)
Q Consensus 281 ~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 346 (430)
+.++.. -..+.+||+.+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+.
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWT--YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEE--ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 555411 245889998876322 22111111122222332 56777777764 3689999987654
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.21 E-value=0.04 Score=46.80 Aligned_cols=189 Identities=16% Similarity=0.278 Sum_probs=94.3
Q ss_pred CCceEEEEeCC-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCCC
Q 014125 137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRPG 205 (430)
Q Consensus 137 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~ 205 (430)
++.+++.|+.+ ..+.+||+.+.+....-...... .....+.+ ++.+++ +|.+ ..+.+||+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~- 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR---STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN- 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC---BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc---cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence 45667777654 35888998887654432221110 01112222 455555 5544 35778887653
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-------CeEEEEEcCCceeeEE--eeccccCeEEEEEccC
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRD 276 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~ 276 (430)
.+.....+.... .....+.+ ++.+++.|+.+ ..+.+||..+.+-... +.........+.+ +
T Consensus 135 -~W~~~~~~p~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 204 (302)
T 2xn4_A 135 -EWFHVAPMNTRR----SSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N 204 (302)
T ss_dssp -EEEEECCCSSCC----BSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred -eEeecCCCCCcc----cCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--C
Confidence 222222221111 11222223 45677777643 4588999887653322 2111112222222 5
Q ss_pred CCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCe
Q 014125 277 GNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKW 346 (430)
Q Consensus 277 ~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 346 (430)
++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.++ .+.+||+.+.+.
T Consensus 205 ~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 205 NLLYAVGG-HDGPLVRKSVEVYDPTTNAWR--QVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TEEEEECC-BSSSSBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CEEEEECC-CCCCcccceEEEEeCCCCCEe--eCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 66666665 43 46889999876322 22111111111222222 567777777653 488999887654
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.21 E-value=0.051 Score=46.21 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=104.4
Q ss_pred CceEEEEeC--CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-EcC----CeEEEEEcCCCCCcccc
Q 014125 138 SCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN----KSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d----~~i~v~d~~~~~~~~~~ 210 (430)
+.+++.|+. ...+.+||..+++....-..... ......+.+ ++.+++. |.+ ..+.+||+.+. .+..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK---RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKD--SWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC---CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTT--EEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc---cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCC--eEEE
Confidence 345566654 35789999988765433221111 011112222 5555554 433 67888888653 2222
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCC------CeEEEEEcCCceeeEE--eeccccCeEEEEEccCCCEEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
...+..... ....+.+ ++.+++.|+.+ ..+.+||..+.+-... +.........+.+ +++.++.
T Consensus 85 ~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 155 (306)
T 3ii7_A 85 KLGPPTPRD----SLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVC 155 (306)
T ss_dssp EECCSSCCB----SCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CCCCCcccc----ceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEE
Confidence 222211111 1222233 45677777765 4588999887653322 1111111122222 5555555
Q ss_pred EecC--------CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCeec-
Q 014125 283 GGRK--------DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKWIS- 348 (430)
Q Consensus 283 ~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~- 348 (430)
++.. -..+.+||+.+..-. .+.........-..+.+ ++++++.|+.+ ..+.+||+.+.+...
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWT--ELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEE--ECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 5411 345889999876322 22111111122222322 56777777654 358999998765432
Q ss_pred -ccccccCCeeEEEEcCCCcEEEEeeCC
Q 014125 349 -GFQAAADTVNGFSFHPFLPMAASSSGH 375 (430)
Q Consensus 349 -~~~~~~~~v~~~~~~~~~~~l~s~~~d 375 (430)
.+.........+.+ ++.+++.|+.+
T Consensus 232 ~~~p~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 232 SPMPWKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp CCCSCCBSCCEEEEE--TTEEEEEECBC
T ss_pred CCCCCCccceeEEEE--CCEEEEEeCcC
Confidence 22211112222222 56666666643
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.059 Score=45.85 Aligned_cols=189 Identities=9% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCceEEEEeCC----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC------CeEEEEEcCCCC
Q 014125 137 TSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN------KSVRVFDVHRPG 205 (430)
Q Consensus 137 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d------~~i~v~d~~~~~ 205 (430)
++.+++.|+.+ ..+.+||+.+++....-...... .....+.+ ++++++ +|.+ ..+.+||..+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~- 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR---DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE- 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC---BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc---cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-
Confidence 45567777654 56888999887654432222111 01112222 555555 4443 46888888753
Q ss_pred CcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC---------CCeEEEEEcCCceeeEE--eeccccCeEEEEEc
Q 014125 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------SQTSAIYREDNMELLYV--LHGQEGGVTHVQFS 274 (430)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~ 274 (430)
.+.....+...... ...+.+ ++.+++.|+. -..+.+||..+.+-... +......-..+.+
T Consensus 129 -~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 199 (306)
T 3ii7_A 129 -SWHTKPSMLTQRCS----HGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV- 199 (306)
T ss_dssp -EEEEECCCSSCCBS----CEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred -ceEeCCCCcCCcce----eEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-
Confidence 22222222111111 122222 4567777764 34588999887653322 1111111122222
Q ss_pred cCCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCC
Q 014125 275 RDGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTG 344 (430)
Q Consensus 275 ~~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 344 (430)
+++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 200 -~~~i~v~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 200 -KDKIFAVGG-QNGLGGLDNVEYYDIKLNEWK--MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp -TTEEEEECC-EETTEEBCCEEEEETTTTEEE--ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred -CCEEEEEeC-CCCCCCCceEEEeeCCCCcEE--ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 555555555 33 46889998876322 22111112222233333 56778888754 45888998876
Q ss_pred Ce
Q 014125 345 KW 346 (430)
Q Consensus 345 ~~ 346 (430)
+.
T Consensus 274 ~W 275 (306)
T 3ii7_A 274 KW 275 (306)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.03 E-value=0.082 Score=47.79 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCceEEEecCCCeEEEEEcCCceee--EEeec------cccCeEEEEEccC---CCEEEEEecC------
Q 014125 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHG------QEGGVTHVQFSRD---GNYLYTGGRK------ 286 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~~~~------ 286 (430)
....|+|.| +++++++-...+.|++++..+++.. ..+.. ..+.+..|+|+|+ +..|+++...
T Consensus 28 ~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 467999999 4556665544457988886555432 22221 2356789999996 6666665522
Q ss_pred ------CCeEEEEeCCCCc-eE--EEEeec--ccCCccceEEEEEcCCCCEEEEEc
Q 014125 287 ------DPYILCWDLRKAV-QV--VYKLYR--SSEHTNQRILFDIEPSGRHLGTGG 331 (430)
Q Consensus 287 ------d~~i~i~d~~~~~-~~--~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~ 331 (430)
...|.-|++.... .. ...+.. ..........++|.|+|.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2355556553321 10 111111 112223468899999998776654
No 325
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.00 E-value=0.13 Score=43.47 Aligned_cols=240 Identities=13% Similarity=0.147 Sum_probs=144.0
Q ss_pred EEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEe
Q 014125 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (430)
Q Consensus 66 ~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 145 (430)
.-.+|..+.||--. ..++.|+|+++...... ..-.+.|.-=.|. ++ +.|+-.+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks------------------~~~~e~VvfWkWi------s~--~~L~lVT 124 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------------HTMTDDVTFWKWI------SL--NTVALVT 124 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEE------------------EECSSCEEEEEEC------SS--SEEEEEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcc------------------eecCCccEEEEec------CC--CeEEEEc
Confidence 44578777777655 56899999987632211 1122466666773 22 2344443
Q ss_pred CCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EE---cC----CeEEEEEcCCCCCcccccccccC
Q 014125 146 RDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YN----KSVRVFDVHRPGRDFEKYSTLKG 216 (430)
Q Consensus 146 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d----~~i~v~d~~~~~~~~~~~~~~~~ 216 (430)
+..|+-|+++. ..+.+.+..+.... ...|..-..+++.++++ +| .+ |.+.+|..+.. ..+
T Consensus 125 -~taVyHWs~~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---------~sQ 193 (365)
T 2xzh_A 125 -DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------VSQ 193 (365)
T ss_dssp -SSEEEEEESSTTCCCEEEEECCGGGT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT---------EEE
T ss_pred -CCcEEEEcccCCCCCceeeecchhcc-cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc---------ccc
Confidence 34599999974 45667777766554 35788888999999887 44 22 67888988753 222
Q ss_pred CCCCCCcceEEEEEcCC--CCceEEEecC---CCeEEEEEcCCc---ee------eEEeec---cccCeEEEEEccCCCE
Q 014125 217 NKEGQAGIMSAIAFSPT--HTGMLAIGSY---SQTSAIYREDNM---EL------LYVLHG---QEGGVTHVQFSRDGNY 279 (430)
Q Consensus 217 ~~~~~~~~v~~~~~~~~--~~~~l~~~~~---dg~v~~~d~~~~---~~------~~~~~~---~~~~i~~~~~~~~~~~ 279 (430)
..++|......+.+..+ ...+++.+.. .+.+++.++... .. +..+-. ..+-..++..++....
T Consensus 194 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygv 273 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 273 (365)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTE
T ss_pred eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCE
Confidence 33566555444443221 1223443332 268888887432 11 111111 1234567888888888
Q ss_pred EEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 280 LYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
++... .-|.|++||+.++...... .-....|...+.+....-++.....|.|.--.++..+.+.
T Consensus 274 iyviT-K~G~ihlyDleTgt~i~~n----rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 274 VFLIT-KYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 337 (365)
T ss_dssp EEEEE-TTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EEEEe-CCcEEEEEEcccCcEEEEe----ccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEeh
Confidence 88888 8999999999999655322 2234445444444444445555678887777777665543
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.92 E-value=0.18 Score=43.87 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=40.6
Q ss_pred cCeEEEEEcc-------CCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc-cCCcE
Q 014125 266 GGVTHVQFSR-------DGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG-QDGLV 336 (430)
Q Consensus 266 ~~i~~~~~~~-------~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 336 (430)
.....++|.+ +|.++++.- ..+.|...++.... ..............+..+++.|+|.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGAL-KDKDVIVMSVNGDK-VTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEET-TTTEEEEEEEETTE-EEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEc-cCCEEEEEEeCCCe-EeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 3567788863 455555544 78888888887542 2211111112235788999999998666433 34543
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.012 Score=50.61 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=72.4
Q ss_pred ceEEEecCCCeEEEEEcCCceeeEEeeccc-cCeEEEEE--ccCCCEEEEEe-cCCCeEEEEeCCCCceEEEEeecccCC
Q 014125 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQF--SRDGNYLYTGG-RKDPYILCWDLRKAVQVVYKLYRSSEH 311 (430)
Q Consensus 236 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~--~~~~~~l~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 311 (430)
.++++++.||.|+-+|..+|+....+.... .++....- .+.+..++... ..||.|..++..++.............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 378999999999999999999998887541 22222110 01122444442 279999999988764332111110011
Q ss_pred ccceEE---EEE-c----CCCCEEEEEccCCcEEEEEcCCCCeeccccc
Q 014125 312 TNQRIL---FDI-E----PSGRHLGTGGQDGLVHIYDLQTGKWISGFQA 352 (430)
Q Consensus 312 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 352 (430)
..++.. ... . ..+..+++|+.+|++...|+.+|+.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 112211 000 0 0356788999999999999999999888763
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.81 E-value=0.21 Score=43.05 Aligned_cols=249 Identities=10% Similarity=0.071 Sum_probs=116.2
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
-..-+.|+|.|||+++++--..|.|++++..++... .+. ....+..........++++|... .++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~----------~~~~v~~~g~~GllGia~~Pdf~---~~g~ 96 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELG----------EVPGVSPSGEGGLLGIALSPDYA---SDHM 96 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEE----------ECTTCCCBTTBSEEEEEECTTHH---HHCE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eec----------ccCceeecCCCCceeeEeccccc---cCCE
Confidence 445789999999998887766899999876543211 000 00011122335677888854211 1233
Q ss_pred eEEEEe--CCCcEEEEeccCCc--------eeeeeecc-cccccccceEEEEECCCCcEEEE-Ec-------------CC
Q 014125 140 VFASTT--RDHPIHLWDATTGL--------LRCTYRAY-DAVDEITAAFSVAFNPTGTKIFA-GY-------------NK 194 (430)
Q Consensus 140 ~l~~~~--~dg~i~vwd~~~~~--------~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~-------------d~ 194 (430)
+.++-+ .++.|.-|.+..+. ....+... ....| ....+.|.|+|.+.++ |. .+
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G 174 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGG 174 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCC
Confidence 333322 34455556554421 11111111 11112 3457999999987774 32 23
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEe-cCCCeEEEEEcCCce-----------------
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNME----------------- 256 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~----------------- 256 (430)
.|.-.+.+..-..-..+........++. ....++|+| .+.++++= +.++.-.|.-+..+.
T Consensus 175 ~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 175 KILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp CEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 4444443321000000000000112332 245789998 45444432 223222222222111
Q ss_pred -eeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE--EEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 257 -LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV--VYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 257 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
++..+..+......++|. +|..+...- ..+.|....+...... ...+. .+....+..++..|||.++++-
T Consensus 253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l-~~~~l~~v~~~~~~~~~~~e~~l--~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYA-EGSVWMAGL-RGERLWRIPLKGTAAAADPQAFL--EGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CCSEEECTTTCCEEEEEEE-TTEEEEEES-TTCSEEEEEEETTEESSCCEEES--TTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcEecCCCCCCCcceEEE-cCceeeccc-cCCEEEEEEecCCceecceEEee--cCCCCCccEEEECCCCcEEEEE
Confidence 122222222345677775 344444444 5566666666544211 01111 2334678889999988765544
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.76 E-value=0.22 Score=42.51 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=90.4
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEc----C-------CeEEEEEcCCCCCc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY----N-------KSVRVFDVHRPGRD 207 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~----d-------~~i~v~d~~~~~~~ 207 (430)
+++.|+ ..+..||..+++... ...... .. .........++.+++ +|. + ..+.+||..+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p--~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQ--VP-KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS--E 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCC--SC-SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT--E
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCC--CC-ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC--e
Confidence 445555 569999999887543 221110 00 112222334566655 453 1 12677777653 2
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC--------CeEEEEEcCCceeeE--EeeccccCeEEEEEccCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~ 277 (430)
+.....+..... ....+.+ ++.+++.|+.+ ..+.+||..+.+-.. .+.........+. -++
T Consensus 79 W~~~~~~p~~r~----~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~ 149 (315)
T 4asc_A 79 WLGMPPLPSPRC----LFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD 149 (315)
T ss_dssp EEECCCBSSCEE----SCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT
T ss_pred EEECCCCCcchh----ceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC
Confidence 222222111111 1122222 45677777742 458899988764322 1111111112222 355
Q ss_pred CEEEEEecC-C-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC-----cEEEEEcCCCCe
Q 014125 278 NYLYTGGRK-D-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG-----LVHIYDLQTGKW 346 (430)
Q Consensus 278 ~~l~~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 346 (430)
+.++.++ . + ..+.+||..+..-. ..............+.+ ++++++.|+.++ .+.+||+.+.+.
T Consensus 150 ~iyv~GG-~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 150 LVYVIGG-KGSDRKCLNKMCVYDPKKFEWK--ELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp EEEEECC-BCTTSCBCCCEEEEETTTTEEE--ECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred EEEEEeC-CCCCCcccceEEEEeCCCCeEE--ECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 5566665 4 2 46889998876322 22111111112222322 567777777654 488999887654
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.73 E-value=0.22 Score=42.25 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=93.7
Q ss_pred CCceEEEEeC----C-----CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec-----CCeEEEEEc
Q 014125 137 TSCVFASTTR----D-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-----NKSVRVFDV 201 (430)
Q Consensus 137 ~~~~l~~~~~----d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-----d~~i~v~d~ 201 (430)
++.+++.|+. + ..+.+||+.+.+....-..... ......+.+ ++++++. |. -..+.+||+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP---RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC---CBTCEEEEE--TTEEEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC---ccccEEEEE--CCEEEEEcCCCCCcccccEEEECC
Confidence 4556666665 2 4688899888764433221111 011122222 5555554 32 246888888
Q ss_pred CCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-----CeEEEEEcCCceeeEE--eeccccCeEEEEEc
Q 014125 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYV--LHGQEGGVTHVQFS 274 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~ 274 (430)
.+. .+.....+..... ....+.+ ++.+++.|+.+ ..+.+||+.+.+-... +.........+.+
T Consensus 145 ~~~--~W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 214 (308)
T 1zgk_A 145 ERD--EWHLVAPMLTRRI----GVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL- 214 (308)
T ss_dssp TTT--EEEECCCCSSCCB----SCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred CCC--eEeECCCCCcccc----ceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-
Confidence 653 2222222111111 1222333 45677777754 4588999877643221 1111112222333
Q ss_pred cCCCEEEEEecCC-----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCC
Q 014125 275 RDGNYLYTGGRKD-----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTG 344 (430)
Q Consensus 275 ~~~~~l~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 344 (430)
+++.++.++ .+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 215 -~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 215 -HNCIYAAGG-YDGQDQLNSVERYDVETETWT--FVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp -TTEEEEECC-BCSSSBCCCEEEEETTTTEEE--ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred -CCEEEEEeC-CCCCCccceEEEEeCCCCcEE--ECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 556666665 43 56899999876322 22111111112222222 56777777754 34788888765
Q ss_pred Ce
Q 014125 345 KW 346 (430)
Q Consensus 345 ~~ 346 (430)
+.
T Consensus 289 ~W 290 (308)
T 1zgk_A 289 TW 290 (308)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.66 E-value=0.1 Score=41.31 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=61.6
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCee--------eeeeeccccCc
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV--------YDFCWFPHMSA 133 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~ 133 (430)
.++.++|+|+|.+.+. .+|.+.-.+..+.... ........| .++.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~------------------~W~~s~t~IG~~Gw~~F~a~~f------ 95 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND------------------NWMGRAKKIGNGGWNQFQFLFF------ 95 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC------------------CHHHHCEEEECSCGGGCSEEEE------
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc------------------cccccccEecccccccceEEEE------
Confidence 6789999999986666 6676655554332110 000011222 44455
Q ss_pred cCCCCceEEEEeCCCcEEEEeccCCceeeeeecccc--cccccceEEEEECCCCcEEEEEcCCeEEE
Q 014125 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTGTKIFAGYNKSVRV 198 (430)
Q Consensus 134 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~d~~i~v 198 (430)
.++|.+.++ .||.|.-++..+.....-+..... ...-..+..+.+.|+|.+.++. |+.++-
T Consensus 96 -D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 96 -DPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp -CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred -CCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 678887777 569888887644221111000000 0001267899999999999988 888543
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.61 E-value=0.087 Score=45.95 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=13.5
Q ss_pred CCceEEEEeCC-CcEEEEeccC
Q 014125 137 TSCVFASTTRD-HPIHLWDATT 157 (430)
Q Consensus 137 ~~~~l~~~~~d-g~i~vwd~~~ 157 (430)
++.+++.|+.+ ..+.++|+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 45566666543 4688889864
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.61 E-value=0.28 Score=41.80 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred CCceEEEEeC-----C------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC--------CeE
Q 014125 137 TSCVFASTTR-----D------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN--------KSV 196 (430)
Q Consensus 137 ~~~~l~~~~~-----d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d--------~~i 196 (430)
++.+++.|+. . ..+.+||+.+++....-..... . .-.+++.. ++.+++ +|.+ ..+
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-R---CLFGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC-E---ESCEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc-h---hceeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 5667777773 1 1277888887765332211111 0 11122222 455555 3321 458
Q ss_pred EEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC-C-----CeEEEEEcCCceeeEE--eeccccCe
Q 014125 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S-----QTSAIYREDNMELLYV--LHGQEGGV 268 (430)
Q Consensus 197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~v~~~d~~~~~~~~~--~~~~~~~i 268 (430)
.+||..+. .+.....+..... ....+.+ ++.+++.|+. + ..+.+||..+.+-... +.......
T Consensus 120 ~~~d~~~~--~W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 190 (315)
T 4asc_A 120 MCYDRLSF--KWGESDPLPYVVY----GHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190 (315)
T ss_dssp EEEETTTT--EEEECCCCSSCCB----SCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred EEECCCCC--cEeECCCCCCccc----ceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce
Confidence 88888753 2222222211111 1222222 5567888776 2 4689999887643221 11111112
Q ss_pred EEEEEccCCCEEEEEecCCC-----eEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCC---------
Q 014125 269 THVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDG--------- 334 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 334 (430)
.++.+ +++.++.++ .++ .+.+||+.+..-. .+............+.+ ++++++.|+.++
T Consensus 191 ~~~~~--~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~ 263 (315)
T 4asc_A 191 GATVH--DGRIIVAAG-VTDTGLTSSAEVYSITDNKWA--PFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELV 263 (315)
T ss_dssp EEEEE--TTEEEEEEE-ECSSSEEEEEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEE
T ss_pred EEEEE--CCEEEEEec-cCCCCccceEEEEECCCCeEE--ECCCCCCcccceeEEEE--CCEEEEECCccccCcCCcccc
Confidence 22222 566666776 443 5888998876322 22211111222222333 467777776532
Q ss_pred -----cEEEEEcCCCCee
Q 014125 335 -----LVHIYDLQTGKWI 347 (430)
Q Consensus 335 -----~i~vwd~~~~~~~ 347 (430)
.+.+||+.+.+..
T Consensus 264 ~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 264 PTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEEEEEEEETTTTEEE
T ss_pred ccccCcEEEecCCCChhh
Confidence 3778888776543
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.017 Score=49.67 Aligned_cols=199 Identities=11% Similarity=0.002 Sum_probs=102.5
Q ss_pred CceEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEE---ECCCCcEEEE--EcCCeEEEEEcCCCCCcccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA---FNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYS 212 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~~--~~d~~i~v~d~~~~~~~~~~~~ 212 (430)
+.+++.++.||.|.-+|..+|+....++.... .++.... ...++..++. ..||.|..++...+...+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~----~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~-- 83 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENF----QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL-- 83 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGS----CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE--
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCcc----CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee--
Confidence 34789999999999999999999988876410 0111110 0012334443 36888888887653211110
Q ss_pred cccCCCCCCCcceEE---EEE-cC---CCCceEEEecCCCeEEEEEcCCceeeEEeecccc-C------eEEEEEc----
Q 014125 213 TLKGNKEGQAGIMSA---IAF-SP---THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-G------VTHVQFS---- 274 (430)
Q Consensus 213 ~~~~~~~~~~~~v~~---~~~-~~---~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~------i~~~~~~---- 274 (430)
...... ...++.. ... .+ .....+++|+.+|.+...|+++|+.+..+..... . ..|....
T Consensus 84 ~~~~lv--~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 84 SIRQLV--STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EHHHHH--TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred ccccce--eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 000000 0111221 000 00 0234789999999999999999999988863211 0 0111111
Q ss_pred -cCCCEEEEEecCCCeEEEEeCCCCceEEEEee---cccCCccceE-EEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 275 -RDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY---RSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 275 -~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
-.+..++.+. .+..+.+.+ +++. ...... ........+. .-..+.++.+ +.++.||.|.-+|..+|+.+.
T Consensus 162 d~~~~~v~ig~-~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 162 QECENMIVIGK-TIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp ---CCEEEEEE-EEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ccCCCeEEEec-ceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1234566665 666666666 3331 110000 0000000000 0001234666 447889999999999888765
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.26 E-value=0.56 Score=41.44 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=146.1
Q ss_pred EEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEE
Q 014125 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (430)
Q Consensus 65 ~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 144 (430)
+.-.+|..+.||-=. ..++.|+|+++...... ..-.+.|.-=.|. + .+.|+-.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks------------------~~~~e~VvfWkWi------s--~~~l~lV 122 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------------HTMTDDVTFWKWI------S--LNTVALV 122 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE------------------EECSSCCCEEEEE------E--TTEEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc------------------eecCCCceEEEec------C--CCeEEEE
Confidence 344577777666554 56899999986532211 1112355555663 2 2234444
Q ss_pred eCCCcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EE---c----CCeEEEEEcCCCCCccccccccc
Q 014125 145 TRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---Y----NKSVRVFDVHRPGRDFEKYSTLK 215 (430)
Q Consensus 145 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~----d~~i~v~d~~~~~~~~~~~~~~~ 215 (430)
+ +..|+-|++.. ..+...+..+.... ...|..-..+++.++++ +| . .|.+.+|..+.. ..
T Consensus 123 T-~taVyHWsi~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---------~s 191 (494)
T 1bpo_A 123 T-DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------VS 191 (494)
T ss_dssp C-SSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC---------CE
T ss_pred c-CCeeEEecccCCCCchhheecchhcc-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc---------cc
Confidence 3 45599999974 45667777766554 35788888999999987 44 2 367889988753 22
Q ss_pred CCCCCCCcceEEEEEcCC--CCceEEEecC---CCeEEEEEcCCc---ee-----eEE-ee---ccccCeEEEEEccCCC
Q 014125 216 GNKEGQAGIMSAIAFSPT--HTGMLAIGSY---SQTSAIYREDNM---EL-----LYV-LH---GQEGGVTHVQFSRDGN 278 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~--~~~~l~~~~~---dg~v~~~d~~~~---~~-----~~~-~~---~~~~~i~~~~~~~~~~ 278 (430)
...++|......+.+..+ ...+++.+.. .+.+++.++... .. ... +- .-.+-..++..++...
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg 271 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC
Confidence 234666655555544321 1224444433 378999887532 11 111 11 1123456788888888
Q ss_pred EEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeec
Q 014125 279 YLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWIS 348 (430)
Q Consensus 279 ~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 348 (430)
.++... .-|.|++||+.++...... .-....|...+.+....-++.....|.|.--.++....+.
T Consensus 272 viyviT-K~G~i~lyDleTgt~i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 272 VVFLIT-KYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred EEEEEe-cCceEEEEecccceeeeee----cccCCceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 888888 8999999999999655322 2334445444444444455666688888777777665543
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.02 E-value=0.77 Score=47.11 Aligned_cols=236 Identities=13% Similarity=0.131 Sum_probs=127.7
Q ss_pred ECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEEEEeCC
Q 014125 68 WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147 (430)
Q Consensus 68 ~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 147 (430)
.+|..+.||-=. ..++.|+|+++........ -..+|.-=.|. +++ .|+-.+ +
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~------------------~~e~VvfWkWi------s~~--~l~lVT-~ 124 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT------------------MTDDVTFWKWI------SLN--TVALVT-D 124 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccc------------------cCCCceEEEec------CCC--eeEEEc-C
Confidence 466666666544 5689999987653322211 12356666673 222 333333 3
Q ss_pred CcEEEEeccC-CceeeeeecccccccccceEEEEECCCCcEEE-EE-------cCCeEEEEEcCCCCCcccccccccCCC
Q 014125 148 HPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-------YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (430)
Q Consensus 148 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-------~d~~i~v~d~~~~~~~~~~~~~~~~~~ 218 (430)
..|.-|++.. ..+...+..+.... ...|..-..+++.++++ +| -.|.+.+|..+... ....
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---------sQ~i 194 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---------SQPI 194 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---------chhh
Confidence 4599999964 34555555554333 24788888899999887 44 23788888887532 2223
Q ss_pred CCCCcceEEEEEc--CCCCceEEEecC---CCeEEEEEcCCc---eee------EEeec---cccCeEEEEEccCCCEEE
Q 014125 219 EGQAGIMSAIAFS--PTHTGMLAIGSY---SQTSAIYREDNM---ELL------YVLHG---QEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 219 ~~~~~~v~~~~~~--~~~~~~l~~~~~---dg~v~~~d~~~~---~~~------~~~~~---~~~~i~~~~~~~~~~~l~ 281 (430)
.||......+... +....+++.+.. .+.++|.++... ... ..+-. -..-..++..++....++
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 4444433333332 111223332222 368888887542 111 01111 122345677788777888
Q ss_pred EEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCe
Q 014125 282 TGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKW 346 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 346 (430)
..+ .-|.|.+||+.++.... ...-....|...+-+....-++.....|.|.--.++....
T Consensus 275 ~it-k~G~~~~~d~~t~~~i~----~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 275 LIT-KYGYIHLYDLETGTCIY----MNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEe-cCceEEEEecccchhhh----hccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 888 89999999999985432 1122233333333333222344444666666555554443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.63 E-value=0.9 Score=38.64 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=88.2
Q ss_pred eEEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEc-----CC-------eEEEEEcCCCCCc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-----NK-------SVRVFDVHRPGRD 207 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d~-------~i~v~d~~~~~~~ 207 (430)
+++.|+. .+..||..+++... ........ .........++.+++.|. ++ .+.+||..+. .
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~ 89 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIP---RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--E 89 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSC---SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--E
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCC---ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--c
Confidence 4444543 38899998887654 22111000 111222334566666442 11 1667776542 2
Q ss_pred ccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC-------CeEEEEEcCCceeeEE--eeccccCeEEEEEccCCC
Q 014125 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------QTSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGN 278 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~ 278 (430)
+.....+..... ....+.+ ++.+++.|+.+ ..+.+||..+.+-... +......-..+. .+++
T Consensus 90 W~~~~~~p~~r~----~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 160 (318)
T 2woz_A 90 WVGLPPLPSARC----LFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGM 160 (318)
T ss_dssp EEECSCBSSCBC----SCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTE
T ss_pred EEECCCCCcccc----ccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCE
Confidence 222222211111 1222233 45677777754 3588899887653322 111111112222 3565
Q ss_pred EEEEEecC-----CCeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC-----CcEEEEEcCCCCee
Q 014125 279 YLYTGGRK-----DPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD-----GLVHIYDLQTGKWI 347 (430)
Q Consensus 279 ~l~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 347 (430)
.++.|+.. -..+.+||..+..-. ..............+.+ ++++++.|+.+ ..+.+||+.+.+..
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKGDWK--DLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEEcCCCCCCCccceEEEEcCCCCEEE--ECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 55555521 235899999876422 22111111111222222 46777777654 34778998876543
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.57 E-value=0.92 Score=38.34 Aligned_cols=127 Identities=7% Similarity=0.008 Sum_probs=71.4
Q ss_pred EEcCCCCceEEEe---cCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEe
Q 014125 229 AFSPTHTGMLAIG---SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL 305 (430)
Q Consensus 229 ~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~ 305 (430)
.|++++..++.+- .....|+..++..... ..+..+.. .+|+|+++.|+-.+.....|...++...... .+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l 182 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF 182 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE
Confidence 5666455444444 2445666667764333 33333322 4578899999877734678888888766433 22
Q ss_pred ecccCCccceEEEEEcCCCCEEEEEccC--CcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEee
Q 014125 306 YRSSEHTNQRILFDIEPSGRHLGTGGQD--GLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 306 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 373 (430)
.. + ... ..++|++.+|+-...+ ..|..-+++.... ..+.. ..+ ..|+|++.+|.-++
T Consensus 183 ~~--~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 183 YD--C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQR 241 (302)
T ss_dssp EC--S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEE
T ss_pred eC--C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEE
Confidence 21 1 112 2356889888766543 3577777765442 23321 222 23677777776553
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.48 E-value=1.5 Score=42.12 Aligned_cols=201 Identities=11% Similarity=0.100 Sum_probs=100.2
Q ss_pred CCceEEEEeCC----CcEEEEeccCCceeeee-ecc-cccccccceEEEEECC-CCcEEE-EEcC------CeEEEEEcC
Q 014125 137 TSCVFASTTRD----HPIHLWDATTGLLRCTY-RAY-DAVDEITAAFSVAFNP-TGTKIF-AGYN------KSVRVFDVH 202 (430)
Q Consensus 137 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~l~-~~~d------~~i~v~d~~ 202 (430)
++.+++.|+.+ ..+.+||+.+++....- ... ........-.+++..+ ++.+++ +|.+ +.+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45667777653 46888998887655433 210 0000001112333333 566665 4432 357888876
Q ss_pred CCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCC--eEEEEEcCCceeeEEe-----eccccCeEEEEEcc
Q 014125 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVL-----HGQEGGVTHVQFSR 275 (430)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~ 275 (430)
+. .+.....+...... . +++... ++.+++.|+.++ .+.+||..+..-...- ........++.+..
T Consensus 477 t~--~W~~~~~~p~~R~~----h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 477 TR--EWSMIKSLSHTRFR----H-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TT--EEEECCCCSBCCBS----C-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred CC--cEEECCCCCCCccc----c-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 53 22222211111111 2 222222 566888887655 6999998876533221 11112223355555
Q ss_pred C-CCEEEEEecC--C-----CeEEEEeCCCCce----EEEEeecc-cCCccceEEEEEcCCCCEEEEEccC--------C
Q 014125 276 D-GNYLYTGGRK--D-----PYILCWDLRKAVQ----VVYKLYRS-SEHTNQRILFDIEPSGRHLGTGGQD--------G 334 (430)
Q Consensus 276 ~-~~~l~~~~~~--d-----~~i~i~d~~~~~~----~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d--------g 334 (430)
+ ++.++.|| . + ..+.+||+.+..- ....+... .........+ ...++++++.|+.+ .
T Consensus 549 ~~~~iyv~GG-~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 549 VSKQGIILGG-GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp TTTEEEEECC-BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTT
T ss_pred CCCEEEEECC-cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCC
Confidence 5 55555565 4 2 4688999987751 01111110 1111112222 23336777777743 4
Q ss_pred cEEEEEcCCCCee
Q 014125 335 LVHIYDLQTGKWI 347 (430)
Q Consensus 335 ~i~vwd~~~~~~~ 347 (430)
.|.+||+.+.+..
T Consensus 627 ~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 627 SIISLDPLSETLT 639 (695)
T ss_dssp SEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 5999999877653
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.47 E-value=0.11 Score=47.19 Aligned_cols=108 Identities=12% Similarity=0.043 Sum_probs=70.4
Q ss_pred cCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCce-----E---EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEE
Q 014125 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ-----V---VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVH 337 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~-----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 337 (430)
.....+.++|||+++++++.-+.++.++|++.... . .........-.......+|+++|....+---|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 34567899999999999998899999999874211 0 000001112345567899999996666777899999
Q ss_pred EEEcCCC----------CeecccccccCCeeEEE------EcCCCcEEEEeeC
Q 014125 338 IYDLQTG----------KWISGFQAAADTVNGFS------FHPFLPMAASSSG 374 (430)
Q Consensus 338 vwd~~~~----------~~~~~~~~~~~~v~~~~------~~~~~~~l~s~~~ 374 (430)
-|++... ..+..+..|-.+ -.+. -.|+|++|++...
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 9998742 234444433322 2222 2578899888753
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.45 E-value=1 Score=38.07 Aligned_cols=200 Identities=6% Similarity=-0.018 Sum_probs=106.3
Q ss_pred CCCCceEEEEeCC--------------CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EE--cCCeEE
Q 014125 135 DPTSCVFASTTRD--------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVR 197 (430)
Q Consensus 135 ~~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~ 197 (430)
++++..|+-+... ..|+..++..++....... .+..|++++..|+ +. .++.-.
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~----------~~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----------PCIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS----------CEEEEEEETTEEEEEEESSSSCEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC----------CccEEEEeCCEEEEEeecCCCCce
Confidence 4466666655432 4577777766653332211 1336777888888 44 244444
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCC
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
||.+...+...+.+ .. +. + ..++|++..++.+......|.+.++..+.....+. +... ..+.|++
T Consensus 131 Iy~~~~dGs~~~~l---t~----~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g 195 (302)
T 3s25_A 131 LYRIRIDGEEKKKI---KN----HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDD 195 (302)
T ss_dssp EEEEETTSCCCEEE---ES----SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEET
T ss_pred EEEEECCCCCeEEE---eC----CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecC
Confidence 55444333222211 11 11 1 34566566666666657788888887665443333 2222 3456999
Q ss_pred CEEEEEecCC-CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEc--cCCcEEEEEcCCCCeeccccccc
Q 014125 278 NYLYTGGRKD-PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGG--QDGLVHIYDLQTGKWISGFQAAA 354 (430)
Q Consensus 278 ~~l~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~ 354 (430)
.+|+-....+ ..|..-++...... .+. ...+ ..|+|++.+|.-++ ..+.|..-+++... ...+...
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~- 264 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPV--VLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAKG- 264 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCE--ECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEES-
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeE--EEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeCC-
Confidence 9998876333 36666677655432 221 1122 34788888887653 24567777776433 2223211
Q ss_pred CCeeEEEEcCCCcEEEEee
Q 014125 355 DTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 355 ~~v~~~~~~~~~~~l~s~~ 373 (430)
.+. .+++.+.+|.-..
T Consensus 265 -~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 265 -EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp -CEE--EEEECSSEEEEEE
T ss_pred -ccc--eEEEeCCEEEEEE
Confidence 233 3344555555544
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.45 E-value=2.1 Score=41.65 Aligned_cols=272 Identities=13% Similarity=0.079 Sum_probs=141.5
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++....+|.+.+ |+..| +..++..++.... ..... . .......|.++.. ..++..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~-~~~~~------~-----~~~~~~~i~~i~~-------d~~~~~ 204 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG-IPLPV------H-----SSQSNLFVNSLLE-------DTTRQC 204 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE-ECCCC------C-----TTCSSCCEEEEEE-------ETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE-ecCCC------c-----cccccceeEEEEE-------ECCCCE
Confidence 4578888877776555 44444 6677765442210 00000 0 0001124666655 334554
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccc-cCCCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL-KGNKE 219 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~ 219 (430)
|..|+.. -+..++..+++......... ..|.++...++|.+.+++ ++-+.+++..... ...+... .....
T Consensus 205 lWigt~~-Gl~~~~~~~~~~~~~~~l~~-----~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~--~~~~~~~~~~~~~ 275 (758)
T 3ott_A 205 VWIGTEG-YLFQYFPSTGQIKQTEAFHN-----NSIKSLALDGNGDLLAGT-DNGLYVYHNDTTP--LQHIIHDSRNIQS 275 (758)
T ss_dssp EEEEEEE-EEEEEETTTTEEEEEEEEEE-----EEEEEEEECTTCCEEEEE-TTEEEEECCTTSC--CEEECCCTTCTTS
T ss_pred EEEEECC-CCeEEcCCCCeEEeccCCCC-----CeEEEEEEcCCCCEEEEe-CCceeEEecCCCc--EEEEEcCCCCcCc
Confidence 5555544 48888887765432211111 268888888888888766 4567788765421 1111100 00011
Q ss_pred CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEee-------ccccCeEEEEEccCCCEEEEEecCCCeEEE
Q 014125 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292 (430)
Q Consensus 220 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i 292 (430)
-....|.++....+ + .|-+|+..| +.++.... . ...+. .....|.++.-..+|...+ ++ .+| +..
T Consensus 276 l~~~~i~~i~~D~~-g-~lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt-~~G-l~~ 347 (758)
T 3ott_A 276 LTNNIIWNIFADQE-H-NIWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GG-ANG-LIR 347 (758)
T ss_dssp CSCSCEEEEEECTT-C-CEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EE-TTE-EEE
T ss_pred CCcCeEEEEEEcCC-C-CEEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-ee-CCc-cee
Confidence 12345888887763 3 355555566 54443321 1 11111 0124588888888887544 45 455 556
Q ss_pred EeCCCCceEEEEeecc-----cCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-c-----ccCCeeEEE
Q 014125 293 WDLRKAVQVVYKLYRS-----SEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-A-----AADTVNGFS 361 (430)
Q Consensus 293 ~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~v~~~~ 361 (430)
++..+........... .-....|.++.-..+|++.+ |+. +-+..+|..+++...... . ....|.++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 425 (758)
T 3ott_A 348 FTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIF 425 (758)
T ss_dssp ESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEE
T ss_pred ecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEE
Confidence 6655421110011110 11234688888888877544 443 469999988765432110 0 123578888
Q ss_pred EcCCCcEEEEe
Q 014125 362 FHPFLPMAASS 372 (430)
Q Consensus 362 ~~~~~~~l~s~ 372 (430)
-.+++.+.+..
T Consensus 426 ~d~~g~lWigT 436 (758)
T 3ott_A 426 EDTAGQLWIST 436 (758)
T ss_dssp ECTTSEEEEEE
T ss_pred EcCCCCEEEEE
Confidence 88877766543
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.38 E-value=1.1 Score=38.09 Aligned_cols=191 Identities=14% Similarity=0.180 Sum_probs=90.9
Q ss_pred CCceEEEEeC----CC-------cEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEE-EEcC-------CeEE
Q 014125 137 TSCVFASTTR----DH-------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-------KSVR 197 (430)
Q Consensus 137 ~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-------~~i~ 197 (430)
++.+++.|+. ++ .+.+||..+++....-..... . .-.+++.. ++.+++ +|.+ ..+.
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r---~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-R---CLFGLGEV-DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-B---CSCEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-c---cccceEEE-CCEEEEEcCccCCCCcccceEE
Confidence 5667777773 12 177788877765433211111 0 11122222 455555 4543 3577
Q ss_pred EEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecC------CCeEEEEEcCCceeeEE--eeccccCeE
Q 014125 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYV--LHGQEGGVT 269 (430)
Q Consensus 198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~--~~~~~~~i~ 269 (430)
+||+.+. .+.....+......| ..+.. ++.+++.|+. -..+.+||..+.+-... +........
T Consensus 131 ~yd~~~~--~W~~~~~~p~~r~~~----~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 131 CYDPVAA--KWSEVKNLPIKVYGH----NVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EEETTTT--EEEEECCCSSCEESC----EEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred EEeCCCC--CEeECCCCCCccccc----EEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccce
Confidence 7887653 222222221111121 22222 5567777764 24589999887653322 111111122
Q ss_pred EEEEccCCCEEEEEecCC----CeEEEEeCCCCceEEEEeecccCCccceEEEEEcCCCCEEEEEccC------------
Q 014125 270 HVQFSRDGNYLYTGGRKD----PYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQD------------ 333 (430)
Q Consensus 270 ~~~~~~~~~~l~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 333 (430)
.+.+ +++.++.++..+ ..+.+||+.+..-. .+............+.+ ++++++.|+.+
T Consensus 202 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~ 275 (318)
T 2woz_A 202 VAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE--VMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPT 275 (318)
T ss_dssp EEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE--ECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCC
T ss_pred EEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE--ECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccc
Confidence 2222 566666666222 35778998776422 22111111111222222 46677777654
Q ss_pred --CcEEEEEcCCCCee
Q 014125 334 --GLVHIYDLQTGKWI 347 (430)
Q Consensus 334 --g~i~vwd~~~~~~~ 347 (430)
..+.+||+.+.+..
T Consensus 276 ~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 276 EVNDIWKYEDDKKEWA 291 (318)
T ss_dssp BCCCEEEEETTTTEEE
T ss_pred eeeeEEEEeCCCCEeh
Confidence 34778888776543
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.89 E-value=1.1 Score=35.49 Aligned_cols=149 Identities=11% Similarity=-0.008 Sum_probs=76.6
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCCcEEEEEcCCeEEE
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAGYNKSVRV 198 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~d~~i~v 198 (430)
.+.+++| +|++.+.++ .+|.+.-.+..+.....-+....... .-..-.++.|.|+|.+.++ .||.|.-
T Consensus 42 ~~~~laf-------~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr 111 (236)
T 1tl2_A 42 NFKFLFL-------SPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYK 111 (236)
T ss_dssp TCSEEEE-------CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEE
T ss_pred cceeEEE-------CCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEE
Confidence 5567777 777876666 77776666654422211111100000 0001368999999988888 7798887
Q ss_pred EEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce------eeEEee-ccccCeEEE
Q 014125 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLH-GQEGGVTHV 271 (430)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------~~~~~~-~~~~~i~~~ 271 (430)
++-.+.+.. .....-...-..--..+..+.+.| ++.+.++. |+.++-....+.. ....+- ..-.....+
T Consensus 112 ~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l 187 (236)
T 1tl2_A 112 ASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL 187 (236)
T ss_dssp ESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred eCCCcCCCC-ceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence 765332211 000000000011224579999999 56566666 7776543332211 011111 222234556
Q ss_pred EEccCCCEEEEE
Q 014125 272 QFSRDGNYLYTG 283 (430)
Q Consensus 272 ~~~~~~~~l~~~ 283 (430)
.|.+++...++.
T Consensus 188 ~f~~~G~l~~v~ 199 (236)
T 1tl2_A 188 FFSSVGTLFGVQ 199 (236)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEe
Confidence 788888766554
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.88 E-value=1.7 Score=37.57 Aligned_cols=142 Identities=12% Similarity=0.025 Sum_probs=63.7
Q ss_pred CcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEE-Ec------CCeEEEEEcCCCCCcccccccccCCCCC
Q 014125 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY------NKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (430)
Q Consensus 148 g~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 220 (430)
..+.+||+.+.+....-....... .-.+++.. ++++++. |. ...+.+||++.....+.....+.... .
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-G 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCC---BSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT-C
T ss_pred ccEEEEeCCCCcEEECCCCCCCCc---ccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc-c
Confidence 468899998876554422221100 10123332 4555553 32 34677788743333333322221110 0
Q ss_pred CCcceEEEEEcCCCCceEEEecCC----------------------CeEEEEEcCCcee--eEEeeccccCeEEEEEccC
Q 014125 221 QAGIMSAIAFSPTHTGMLAIGSYS----------------------QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 221 ~~~~v~~~~~~~~~~~~l~~~~~d----------------------g~v~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~ 276 (430)
.....++.+ ++.+++.|+.+ ..+.+||+.+.+- +..+......-.++. .+
T Consensus 243 -~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~ 316 (357)
T 2uvk_A 243 -VAGGFAGIS---NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WN 316 (357)
T ss_dssp -CBSCEEEEE---TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ET
T ss_pred -cccceEEEE---CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eC
Confidence 011122222 45677777642 2578899876542 322322222222222 36
Q ss_pred CCEEEEEecCCC------eEEEEeCCCCceE
Q 014125 277 GNYLYTGGRKDP------YILCWDLRKAVQV 301 (430)
Q Consensus 277 ~~~l~~~~~~d~------~i~i~d~~~~~~~ 301 (430)
++.++.|| .++ .|.++++++.+..
T Consensus 317 ~~i~v~GG-~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 317 NSLLIIGG-ETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp TEEEEEEE-ECGGGCEEEEEEEEEC-CCSCE
T ss_pred CEEEEEee-eCCCCCEeeeEEEEEEcCcEeE
Confidence 67777777 432 4566677776544
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.71 E-value=7.7 Score=37.64 Aligned_cols=290 Identities=11% Similarity=-0.030 Sum_probs=147.2
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
..|.++...++|.+.+ |+.+ -+.+++..+.......... ... ..-....|+++.- ..+|.
T Consensus 232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~-------~~~---~~l~~~~i~~i~~-------D~~g~- 291 (758)
T 3ott_A 232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDS-------RNI---QSLTNNIIWNIFA-------DQEHN- 291 (758)
T ss_dssp EEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCT-------TCT---TSCSCSCEEEEEE-------CTTCC-
T ss_pred CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCC-------CCc---CcCCcCeEEEEEE-------cCCCC-
Confidence 3477777777776554 4444 4777877654321100000 000 0011235777765 44555
Q ss_pred EEEEeCCCcEEEEeccCCceeeeeecc--cccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCC-cccccccccCC
Q 014125 141 FASTTRDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR-DFEKYSTLKGN 217 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~ 217 (430)
|-.|+..| +.++... .. ...+... ........|.++.-..+|.+.+++.+ -+..++...... ...........
T Consensus 292 lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 367 (758)
T 3ott_A 292 IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKT 367 (758)
T ss_dssp EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSS
T ss_pred EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcC
Confidence 44455556 5544332 21 1111110 00011236888888888888877654 466666543211 11111100000
Q ss_pred CCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEe--ec----cccCeEEEEEccCCCEEEEEecCCCeEE
Q 014125 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HG----QEGGVTHVQFSRDGNYLYTGGRKDPYIL 291 (430)
Q Consensus 218 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~----~~~~i~~~~~~~~~~~l~~~~~~d~~i~ 291 (430)
..-....|.++.-.+ .+ .|..|+ ++-+..||..+++..... .. ....|.++...++|. |..++ ..+-|.
T Consensus 368 ~~l~~~~v~~i~~d~-~g-~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT-~~~Gl~ 442 (758)
T 3ott_A 368 YPLSHNRIRHIYEDK-EQ-QLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWIST-CLGGIF 442 (758)
T ss_dssp SCCSCSCEEEEEECT-TS-CEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEE-SSSCEE
T ss_pred CCCCCCceEEEEECC-CC-CEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEE-CCCceE
Confidence 011224588888776 33 344455 457999998876543221 11 123578888877775 44455 556678
Q ss_pred EEeCCCC-----ceEE--EEeeccc-CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccc-c--ccCCeeEE
Q 014125 292 CWDLRKA-----VQVV--YKLYRSS-EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQ-A--AADTVNGF 360 (430)
Q Consensus 292 i~d~~~~-----~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~--~~~~v~~~ 360 (430)
++|..+. .... ....... -....|.++...++|.+.+.++..+-|..+|..+++...... . ....+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i 522 (758)
T 3ott_A 443 VVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYL 522 (758)
T ss_dssp EEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEE
T ss_pred EEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceE
Confidence 8875421 1111 0111111 123458889889888876533334458889988765433211 1 12457788
Q ss_pred EEcCCCcEEEEeeCCceeeec
Q 014125 361 SFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 361 ~~~~~~~~l~s~~~d~~~~vw 381 (430)
....+|.+.+.. ..| +..+
T Consensus 523 ~~d~~g~lWigt-~~G-l~~~ 541 (758)
T 3ott_A 523 LCDEDGLLWVGF-HGG-VMRI 541 (758)
T ss_dssp EECTTSCEEEEE-TTE-EEEE
T ss_pred EECCCCCEEEEe-cCc-eEEE
Confidence 888888876654 445 4444
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.57 E-value=3.9 Score=36.92 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=61.2
Q ss_pred ceEEEEECCCCc--EEEEEcCCeEEEEEcCCCCCcccccccccCCCC-----CCCcceEEEEEcCC---CCceEEEecC-
Q 014125 175 AAFSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT---HTGMLAIGSY- 243 (430)
Q Consensus 175 ~v~~~~~~~~~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~- 243 (430)
..+.|+|.|++. ++++...|.|++++...... ...+..+..... ........|+|+|+ ++.++++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 567899999995 77788899999997532111 111111111111 12456789999994 2444444332
Q ss_pred -C----------CeEEEEEcCC----------ceeeEEee--ccccCeEEEEEccCCCEEEEEe
Q 014125 244 -S----------QTSAIYREDN----------MELLYVLH--GQEGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 244 -d----------g~v~~~d~~~----------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 284 (430)
+ ..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 1344455432 12222222 1123467899999998777766
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.80 E-value=5.5 Score=33.94 Aligned_cols=199 Identities=7% Similarity=0.006 Sum_probs=102.2
Q ss_pred ceEEEEeCCCcEEEEeccCCceee----eeecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEc---CCCCCcc--
Q 014125 139 CVFASTTRDHPIHLWDATTGLLRC----TYRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDV---HRPGRDF-- 208 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~v~d~---~~~~~~~-- 208 (430)
..+++.+.+|.|+--.+.+-+... -...... .....+..+ .-+....+++.+..|.++-... .......
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCC-CGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 467888889988876543211100 0000000 111133333 3344445555677777665543 2211100
Q ss_pred cccccccCCCCCCCcceEEE-EEcCC-CCceEEEecCCCeEEEEEcCCce-------eeEEeeccccCeEEEEEccCCCE
Q 014125 209 EKYSTLKGNKEGQAGIMSAI-AFSPT-HTGMLAIGSYSQTSAIYREDNME-------LLYVLHGQEGGVTHVQFSRDGNY 279 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~l~~~~~dg~v~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~ 279 (430)
..+..+.. +.. ...|..+ .+... ....++..+.+|.++.-.+.... ....+.. ...+..+........
T Consensus 83 ~~i~~~l~-l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 83 QHVANLLA-FQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD 159 (327)
T ss_dssp EEHHHHTT-CCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred EEHHHccC-CCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence 00001111 122 2335444 44321 35689999999999998765432 1222332 344555555445566
Q ss_pred EEEEecCCCeEEEEeCC--CCceE-----EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 280 LYTGGRKDPYILCWDLR--KAVQV-----VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 280 l~~~~~~d~~i~i~d~~--~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
|+..+ ..|.+..+... .-... -..... ......|.++...+.+.+|+..+..|.++.-.+..
T Consensus 160 ill~T-~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 160 LLLVS-ANGQSIRFSATDEALRPMGRATSGVQGMR-FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEEE-TTSEEEEEECCTTTSCCCCTTSBCEESSC-CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEE-CCCeEEEEECcccccCcCCcCCCCeeeec-CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 77777 78988887766 21100 001111 12345566666666677899999999999887653
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.00 E-value=7.4 Score=33.90 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=98.7
Q ss_pred cceEEEEEc---CC---CCceE-EEecCCCeEEEEEcCCceeeEEeec--------------c----ccCeEEEEEccC-
Q 014125 223 GIMSAIAFS---PT---HTGML-AIGSYSQTSAIYREDNMELLYVLHG--------------Q----EGGVTHVQFSRD- 276 (430)
Q Consensus 223 ~~v~~~~~~---~~---~~~~l-~~~~~dg~v~~~d~~~~~~~~~~~~--------------~----~~~i~~~~~~~~- 276 (430)
..+..+.+. |. +..++ ++=+..+.|.+||+.+++..+.+.. . ...+..|+.+|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 457778777 21 12343 3334567899999998876554421 0 136788999998
Q ss_pred ---CCEEEEEecCCC-eEEEEe---CCCCc--eEEEEeecccCCccceEEEEEc-CCCCEEEEEccCCcEEEEEcCC-C-
Q 014125 277 ---GNYLYTGGRKDP-YILCWD---LRKAV--QVVYKLYRSSEHTNQRILFDIE-PSGRHLGTGGQDGLVHIYDLQT-G- 344 (430)
Q Consensus 277 ---~~~l~~~~~~d~-~i~i~d---~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-~- 344 (430)
++.|+-.. ..+ .+.--. +++.. ..+..+.. .+....-..++++ .+|.++++--..+.|..|+..+ .
T Consensus 232 ~~~~~~LYf~p-lss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~ 309 (381)
T 3q6k_A 232 SEGNRPAYYLA-GSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPL 309 (381)
T ss_dssp TTSCCEEEEEE-SSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSB
T ss_pred CCCCeEEEEEE-CCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcc
Confidence 77777766 333 333222 11111 11111111 1212334456775 6787777778888999999875 1
Q ss_pred --Ceeccccc--ccCCeeEEEEcCCCcEEEEeeCCceeeecCCCccccccCCCcEEEEee-ccccccc
Q 014125 345 --KWISGFQA--AADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSGDENCVSVWSF-LYASMME 407 (430)
Q Consensus 345 --~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~~d~~i~~w~~-~~~~~~~ 407 (430)
+....+.. .-..+..+.+.++|.+.+.+.. +..+....+. -..+-..+||.+ ...+.+.
T Consensus 310 ~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~---l~~~~~g~l~-d~~~~nfrI~r~~~~~~~i~ 373 (381)
T 3q6k_A 310 RMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG---FPPIRKSEKF-KYDFPRYRLMRIMDTQEAIA 373 (381)
T ss_dssp CGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS---CCSSTTGGGC-CCSSCSEEEEEESCHHHHHT
T ss_pred ccCceEEEEECCCccccCeEEECCCCeEEEEECc---chHhhcCCcC-CCCcCCEEEEEecCHHHHhc
Confidence 11222221 1124678888888887777653 2212111110 124567889987 6655543
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.56 E-value=8.9 Score=36.77 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCceEEEEeCCC--cEEEEeccCCceeeeeecccccccccceEEEEECCC-CcEEEE-Ec--C-----CeEEEEEcCCCC
Q 014125 137 TSCVFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFA-GY--N-----KSVRVFDVHRPG 205 (430)
Q Consensus 137 ~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-~~--d-----~~i~v~d~~~~~ 205 (430)
++.+++.|+.++ .+.+||+.+......-.............++.+..+ +++++. |. + +.+.+||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 677788887655 689999988765433221001011112223555555 555554 43 2 468899987754
Q ss_pred C----cccccccccCCCCCCCcceEEEEEcCCCCceEEEecC--------CCeEEEEEcCCceee
Q 014125 206 R----DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--------SQTSAIYREDNMELL 258 (430)
Q Consensus 206 ~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------dg~v~~~d~~~~~~~ 258 (430)
- .+....... ... .....++.+. ++.+++.|+. ...|.+||+.+.+-.
T Consensus 580 w~~~~~W~~~~~~p--~~~-R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 580 ATEPITVIKKLQHP--LFQ-RYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SSCCEEEEEEEECG--GGC-CBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cccceEEEEcCCCC--CCC-cccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 1 011111100 001 1112233332 2567888774 346899999876543
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.25 E-value=0.38 Score=43.85 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=65.9
Q ss_pred CceeEEEECcCCceEEEecC-CCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 61 NFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.....+..+|||++++.++. +.++.|+|+........-... .. .........-+..-...+| .++|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~---~~--~~~~~ae~e~GlGPlHt~F-------d~~G~ 390 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA---DP--RDVIVGEPELGLGPLHTTF-------DGRGN 390 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS---CG--GGGEEECCBCCSCEEEEEE-------CSSSE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc---Cc--ccceEeeccCCCcccEEEE-------CCCCc
Confidence 34567999999999887665 789999998742110000000 00 0000111122333444555 77886
Q ss_pred eEEEEeCCCcEEEEeccCC----------ceeeeeecccccccccceEEEEECCCCcEEEEE
Q 014125 140 VFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (430)
...+-.-|..|.-|++... ..+..+..+-..+|.....+=.-.|+|++|++.
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 6677778999999998753 344445554433322111111235678888754
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.12 E-value=9.7 Score=32.42 Aligned_cols=220 Identities=9% Similarity=-0.003 Sum_probs=104.8
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEE---EeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCC
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRI---FSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~i---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (430)
.+.+..+........|+.-+..|.++- |+++.... ..........+.+..+..|.++.-.+. .+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---------~~~G~~i~~~l~l~~~e~i~~~~~~~~----~~ 107 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR---------TARGQHVANLLAFQPEERIAQVIQIRG----YT 107 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS---------SSCCEEHHHHTTCCTTCCEEEEEEESS----TT
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---------cCCCEEHHHccCCCCCCEEEEEEEecc----CC
Confidence 344555544444556666666676543 33432211 001111111222334455555533221 23
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeee--eecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEcC--CCCCcccc-
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDVH--RPGRDFEK- 210 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~v~d~~--~~~~~~~~- 210 (430)
+...++..+.+|.++--.+..-..... .....-.+ ...+..+ ..+.+..+++.+..|.+..+... .-......
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 567899999999999988755221110 11111101 1133333 34444555568889998888776 21110000
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCcee-------eEE--eeccccCeEEEEEccCCCEEE
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYV--LHGQEGGVTHVQFSRDGNYLY 281 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------~~~--~~~~~~~i~~~~~~~~~~~l~ 281 (430)
.......+ .....|.++...+ ....++..+..|.++.-.+..... +.. +....+.+..+....+...++
T Consensus 187 ~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 187 SGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp BCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 00000111 2234466665555 344788888999998877543221 111 211123444444333344455
Q ss_pred EEecCCCeEEEEeCC
Q 014125 282 TGGRKDPYILCWDLR 296 (430)
Q Consensus 282 ~~~~~d~~i~i~d~~ 296 (430)
..+ .+|.+.-++..
T Consensus 265 l~T-~~G~~ir~~~~ 278 (327)
T 3uc1_A 265 AVT-SGGGVIRTAAR 278 (327)
T ss_dssp EEE-GGGCEEEEEGG
T ss_pred EEc-CCCeEEEEehh
Confidence 555 56666656543
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.45 E-value=14 Score=33.33 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=32.3
Q ss_pred cceEEEEEcCC-------CCEEEEEccCCcEEEEEcCCCCee---ccc-cc--------ccCCeeEEEEcCCCcEEEEee
Q 014125 313 NQRILFDIEPS-------GRHLGTGGQDGLVHIYDLQTGKWI---SGF-QA--------AADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 313 ~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~---~~~-~~--------~~~~v~~~~~~~~~~~l~s~~ 373 (430)
..+..+.|-.. |.+|+ +...+.|....++..... ..+ .+ ....+.++...|+|.++++..
T Consensus 276 ~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 276 GPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp -CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 45677777432 33444 444477666665533211 111 11 124689999999999887765
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.08 E-value=19 Score=34.54 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=109.9
Q ss_pred CCCCceEEEE-eCC----CcEEEEeccCCceeee-eecccccc---cccceEEEEECCCCcEEEEE-----------cCC
Q 014125 135 DPTSCVFAST-TRD----HPIHLWDATTGLLRCT-YRAYDAVD---EITAAFSVAFNPTGTKIFAG-----------YNK 194 (430)
Q Consensus 135 ~~~~~~l~~~-~~d----g~i~vwd~~~~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-----------~d~ 194 (430)
+|++++++.+ |.. ..++++|+.+++.+.. +. ..... .......++|..++.++++. ...
T Consensus 138 ~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 138 FQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp SSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred CCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 6788776654 333 3699999999876631 11 10000 00011344776555555532 125
Q ss_pred eEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCc----eEEEec---CCCeEEEEEcCC--ceeeEEeeccc
Q 014125 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG----MLAIGS---YSQTSAIYREDN--MELLYVLHGQE 265 (430)
Q Consensus 195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~---~dg~v~~~d~~~--~~~~~~~~~~~ 265 (430)
.|+.|.+-++...-..+..- .. .........++++.. .+++.+ ....+.+.+... ++. ..+....
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 290 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEV----PK-EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPS 290 (711)
T ss_dssp EEEEEETTSCGGGCEEEEEC----CT-TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCT
T ss_pred EEEEEECCCChHHCeEEecc----CC-CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCC
Confidence 68888876542221111111 11 111234445554443 344333 224566666553 332 2222122
Q ss_pred cCeEEEEEccCCCEEEEEe---------cCCCeEEEEeCCCCc------eEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 266 GGVTHVQFSRDGNYLYTGG---------RKDPYILCWDLRKAV------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 266 ~~i~~~~~~~~~~~l~~~~---------~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
. ..+..+.++.+++... ...+.|...|+.+.. .....+.. ......+..+.+..+ .++++.
T Consensus 291 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 291 D--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT-PTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp T--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-CCTTEEEEEEEECSS-CEEEEE
T ss_pred c--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC-CCCCCeEEEEEEECC-EEEEEE
Confidence 1 1123344555444321 035678888886531 11111111 234456778888875 577777
Q ss_pred ccCCc--EEEEEcCCCC-eecc-cccc-cCCeeEEEEcCCCc-EEEEe
Q 014125 331 GQDGL--VHIYDLQTGK-WISG-FQAA-ADTVNGFSFHPFLP-MAASS 372 (430)
Q Consensus 331 ~~dg~--i~vwd~~~~~-~~~~-~~~~-~~~v~~~~~~~~~~-~l~s~ 372 (430)
..++. |+++++.+++ .+.. +... .+.+..+...+++. ++++.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ 414 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITI 414 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEE
Confidence 77765 7777776664 2222 2211 24566666667665 44443
No 355
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=87.77 E-value=12 Score=31.69 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=105.3
Q ss_pred CCCceEEEEeCCCcEEEEeccCCceeee----eecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEcCC---CCCc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLLRCT----YRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDVHR---PGRD 207 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~v~d~~~---~~~~ 207 (430)
++...+++.+.+|.|+--.+..-+.... ...... .....+..+ ..+.....++.+..|.++-+.... .+..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l-ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL-NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc-CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3566788999999999887654321110 000000 111133333 334445556678888877776542 1100
Q ss_pred c--cccccccCCCCCCCcceEEEEEcCC--CCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccC
Q 014125 208 F--EKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRD 276 (430)
Q Consensus 208 ~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~ 276 (430)
. ........ +.. ...|..+...++ ....++..+..|.++...+... .....+.. ...+..+.....
T Consensus 85 ~~G~~i~~~l~-l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 85 SKGQNISELIN-LGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ---CBGGGTSC-CCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred CCCcChhhccC-CCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 0 00000111 112 233444433221 3456778899999998876432 22223332 445666555444
Q ss_pred CCEEEEEecCCCeEEEEeCCCCce-----EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 277 GNYLYTGGRKDPYILCWDLRKAVQ-----VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 277 ~~~l~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
+..++..+ .+|.+..+....-.. .-....... ....+..+..-+++..|++.+..|..+..++..
T Consensus 162 ~~~i~l~T-~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLS-KKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEE-TTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEe-CCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55677777 799988887653110 000111111 244566665555567788889999999888753
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=87.37 E-value=12 Score=31.48 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=100.0
Q ss_pred CCceEEEEeCCCcEEEEeccCCceeee----eecccccccccce-EEEEECCCCcEEEEEcCCeEEEEEcC---CCCCcc
Q 014125 137 TSCVFASTTRDHPIHLWDATTGLLRCT----YRAYDAVDEITAA-FSVAFNPTGTKIFAGYNKSVRVFDVH---RPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~d~~i~v~d~~---~~~~~~ 208 (430)
+...+++.+.+|.|+--.+.+-+.... ..... ......+ ..+..+....+++.+..|.++-+... ..+...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR-IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeee-eCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 455788899999998776654221111 00000 0011123 23334445556667778876666543 221110
Q ss_pred --cccccccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCC
Q 014125 209 --EKYSTLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDG 277 (430)
Q Consensus 209 --~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~ 277 (430)
........ +. ....|.++..-+ .....++..+..|.++.-.+... .....+..+ +.+..+......
T Consensus 81 ~G~~i~~~l~-l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 81 RGRPIVNLLP-LE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp CCEEGGGTSC-CC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCeEhhhccC-CC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 00011111 11 223455553321 13456888999999999876432 122223323 455555554445
Q ss_pred CEEEEEecCCCeEEEEeCCCCceE-----EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 278 NYLYTGGRKDPYILCWDLRKAVQV-----VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 278 ~~l~~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
..++..+ .+|.+..+....-... -..... ......|..+...+++..|++.+..|.++-.++.
T Consensus 158 ~~i~l~T-~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 158 DEVMLFS-AEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CEEEEEE-TTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CEEEEEC-CCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 5666666 7888877766432110 001111 1233456666555556678888999998888764
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.44 E-value=3.5 Score=41.16 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccc
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD 97 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~ 97 (430)
..+.++...++..++++-+.|+++|+|++.+++++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 3567788888888999999999999999998876544
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.92 E-value=15 Score=30.36 Aligned_cols=241 Identities=11% Similarity=-0.020 Sum_probs=121.5
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceE
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (430)
.|..|+....- .++. . ||.|..|-......... + ......|..++- . ....+
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~---p--------------~~~~~~i~~ia~-------G-~~hs~ 76 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM---P--------------AATQSGVDAIAA-------G-NYHSL 76 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC---C--------------GGGGSCCCEEEE-------C-SSEEE
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC---C--------------ccCCCCEEEEEe-------C-CCEEE
Confidence 46677665432 3333 4 89999997654322210 0 001124444443 1 12233
Q ss_pred EEEeCCCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCC
Q 014125 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (430)
Q Consensus 142 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 221 (430)
+. . ||.|..|-....-.+.. +. .....|..++..... .++.. +|.|+.|-....+..... ...
T Consensus 77 ~l-~-~G~v~~wG~n~~Gqlg~---P~--~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~--------~~~ 139 (282)
T 3qhy_B 77 AL-K-DGEVIAWGGNEDGQTTV---PA--EARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVP--------AEA 139 (282)
T ss_dssp EE-E-TTEEEEEECCTTSTTCC---CG--GGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCC--------GGG
T ss_pred EE-E-CCEEEEeeCCCCCCCCC---Cc--ccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCC--------ccC
Confidence 33 4 89999997654221111 00 011256667665443 34445 999999987654332110 011
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceE
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~ 301 (430)
...|..++... ...+.-. +|.|+.|-......+..-......|..++..... .++. . ||.|+.|-.....+.
T Consensus 140 ~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al-~--~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 140 QSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL-K--DGKVIAWGDNRYKQT 211 (282)
T ss_dssp GSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E--TTEEEEEECCTTSTT
T ss_pred CCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE-E--CCeEEEEECCCCCCC
Confidence 23477776643 2333333 7999999765432221111123467777764432 2333 3 899999976654332
Q ss_pred EEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCC
Q 014125 302 VYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFL 366 (430)
Q Consensus 302 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 366 (430)
-.. ......|..++.... ..++. . ||.|+.|-.....++.. ...|.+|+-....
T Consensus 212 g~p----~~~~~~v~~i~~G~~-h~~al-~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 212 TVP----TEALSGVSAIASGEW-YSLAL-K-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp CCC----GGGGSSCCEEEECSS-CEEEE-E-TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred CCC----cccCCCceEEEcCCC-EEEEE-E-CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 111 112334666665443 23333 3 99999998776544433 2356666555433
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.86 E-value=16 Score=30.35 Aligned_cols=204 Identities=12% Similarity=-0.023 Sum_probs=106.3
Q ss_pred CCcEEEEeccCCceeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcccccccccCCCCCCCcceE
Q 014125 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226 (430)
Q Consensus 147 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (430)
||.|..|-....-.+.. +. .....|..++.......++ . ||.|..|-....+..-... . -...|.
T Consensus 41 ~G~v~~wG~n~~Gqlg~-p~----~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~-~-------~~~~v~ 105 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM-PA----ATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPA-E-------ARSGVD 105 (282)
T ss_dssp TTEEEEEECCSSSTTSC-CG----GGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCG-G-------GSSSEE
T ss_pred CCEEEEEeCCCCCCCCC-Cc----cCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCc-c-------cCCCeE
Confidence 89999997654221111 00 1112566777654444443 4 9999999876543321100 0 123577
Q ss_pred EEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEee
Q 014125 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLY 306 (430)
Q Consensus 227 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~ 306 (430)
.++... ...+.-. +|.|+.|-......+.........|..++.... +.++-. ||.|+.|-.....+...+
T Consensus 106 ~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~--~G~v~~wG~n~~gqlg~p-- 175 (282)
T 3qhy_B 106 AIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK--NGGVIAWGDNYFGQTTVP-- 175 (282)
T ss_dssp EEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE--TTEEEEEECCTTSTTSCC--
T ss_pred EEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE--CCEEEEecCCCCCCCCCc--
Confidence 777754 2344445 999999976543222111122345777765433 233332 688999976654322111
Q ss_pred cccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCC
Q 014125 307 RSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDF 383 (430)
Q Consensus 307 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~ 383 (430)
......|..++.... +.+.- .||.|+.|-....-.+..-......|..|+-.....++++ ||.+..|..
T Consensus 176 --~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~ 244 (282)
T 3qhy_B 176 --AEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGS 244 (282)
T ss_dssp --GGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEEST
T ss_pred --eecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecC
Confidence 112345777765433 33333 6999999987653222211112235666665443333333 777777744
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=81.97 E-value=25 Score=30.64 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=58.4
Q ss_pred ceEEEEECC---CCcEEEEEcCCeEEEEEcCCCCCcccccccccCCC------------CCCCcceEEEEEcCCCCceEE
Q 014125 175 AAFSVAFNP---TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK------------EGQAGIMSAIAFSPTHTGMLA 239 (430)
Q Consensus 175 ~v~~~~~~~---~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~ 239 (430)
.|.++++.| .+.+.+++..+.|. .....+..+.......... ......+.+|.++|.+...+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~--~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLF--RSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEE--EESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEE--EEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 577889986 34555555556544 3344444444332110000 012245889999985555556
Q ss_pred EecCCCeEEEEEcCCceeeEEeec-----c--------ccCeEEEEEccC-CCEEEEEecCCCeEEEEe
Q 014125 240 IGSYSQTSAIYREDNMELLYVLHG-----Q--------EGGVTHVQFSRD-GNYLYTGGRKDPYILCWD 294 (430)
Q Consensus 240 ~~~~dg~v~~~d~~~~~~~~~~~~-----~--------~~~i~~~~~~~~-~~~l~~~~~~d~~i~i~d 294 (430)
++..++.|...+- .++.-..+.. + ...+.+++++|. ...|+++. ..+ |...+
T Consensus 194 vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~~g-l~~s~ 259 (394)
T 3b7f_A 194 IGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-HCG-IYRMD 259 (394)
T ss_dssp EEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-TTE-EEEEE
T ss_pred EEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-CCe-EEEeC
Confidence 6655555544322 2222222210 0 124889999986 35666666 444 44443
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.74 E-value=56 Score=32.66 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=32.2
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45677778888889999999999999999999876654
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=77.40 E-value=36 Score=29.65 Aligned_cols=178 Identities=11% Similarity=0.155 Sum_probs=92.7
Q ss_pred cEEEEeccCC--ceeeeeeccccc-ccccceEEEEEC---CC----CcEEEEE--cCCeEEEEEcCCCCCccccccc-cc
Q 014125 149 PIHLWDATTG--LLRCTYRAYDAV-DEITAAFSVAFN---PT----GTKIFAG--YNKSVRVFDVHRPGRDFEKYST-LK 215 (430)
Q Consensus 149 ~i~vwd~~~~--~~~~~~~~~~~~-~~~~~v~~~~~~---~~----~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~-~~ 215 (430)
.|.+||+.++ +.++.+...... .....+..+.+. |. +.++..+ ..+.|.|+|+.++.. ++.... ..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 5889999999 998888775332 223356777777 22 3444443 568899999987422 221110 00
Q ss_pred CC------CCCC----CcceEEEEEcCC----CCceEEEecCCCeEEEEE---cCCce---eeEEeeccc---cCeEEEE
Q 014125 216 GN------KEGQ----AGIMSAIAFSPT----HTGMLAIGSYSQTSAIYR---EDNME---LLYVLHGQE---GGVTHVQ 272 (430)
Q Consensus 216 ~~------~~~~----~~~v~~~~~~~~----~~~~l~~~~~dg~v~~~d---~~~~~---~~~~~~~~~---~~i~~~~ 272 (430)
.. ..+. ...+..++++|+ +..++...-....++-.. ++... .+..+ +.. ..-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 00 0111 246888999986 333333333333444333 22221 12222 222 2334567
Q ss_pred Ec-cCCCEEEEEecCCCeEEEEeCCC-Cc--eEEEEeecccCCccceEEEEEcCCCCEEEEE
Q 014125 273 FS-RDGNYLYTGGRKDPYILCWDLRK-AV--QVVYKLYRSSEHTNQRILFDIEPSGRHLGTG 330 (430)
Q Consensus 273 ~~-~~~~~l~~~~~~d~~i~i~d~~~-~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 330 (430)
++ .+|..+++-- ....|..|+..+ .- .....+.... .-..+..+.+.++|.+.+..
T Consensus 282 ~D~~~G~ly~~~~-~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEA-NTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEES-SSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEec-cCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence 75 5665555544 889999999876 21 1111222212 33345666666666544444
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=76.13 E-value=34 Score=28.74 Aligned_cols=217 Identities=9% Similarity=0.004 Sum_probs=101.5
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeC---CCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSL---PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+.+..+........|+..+..|.+.-... +.... ..........+.+..+..|.++.-.+. ..+
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---------~a~G~~i~~~l~l~~~e~i~~~~~~~~----~~~ 108 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR---------GARGRPIVNLLPLEQDERITAILPVTE----FEE 108 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS---------SSCCEEGGGTSCCCTTCCEEEEEEESC----CCT
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC---------CCCCeEhhhccCCCCCCEEEEEEEecc----CCC
Confidence 33444444444556666677777554433 32211 001111111223344455655533211 124
Q ss_pred CceEEEEeCCCcEEEEeccCCcee-----eeeecccccccccceEEEE-ECCCCcEEEEEcCCeEEEEEcCCCCCccccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLLR-----CTYRAYDAVDEITAAFSVA-FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY 211 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 211 (430)
+.+++..+..|.++-..+..-... ..+.... . ..+..+. ...+..+++.+.+|.+..+....-.......
T Consensus 109 ~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~---~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a 184 (307)
T 1zi0_A 109 GVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD---G-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT 184 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT---T-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTC
T ss_pred CcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC---C-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCC
Confidence 557889999999999876532111 1111111 1 2344433 3444556668888988888765311100000
Q ss_pred ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce---------eeEEeeccccCeEEEEEccCCCEEEE
Q 014125 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---------LLYVLHGQEGGVTHVQFSRDGNYLYT 282 (430)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~ 282 (430)
.-...........|.++...+ ....+++.+..|.++-.++.... ....+....+.+..+....+...++.
T Consensus 185 ~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 185 TGVRGIRLGEGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp CCEECCCCCTTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCeEeEEeCCCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 000000111234466665444 33467888889998888764321 11122222244444443333344445
Q ss_pred EecCCCeEEEEeCC
Q 014125 283 GGRKDPYILCWDLR 296 (430)
Q Consensus 283 ~~~~d~~i~i~d~~ 296 (430)
.+ .+|.+.-+.+.
T Consensus 264 ~t-~~g~~ir~~~~ 276 (307)
T 1zi0_A 264 IT-DAGTLVRTRVS 276 (307)
T ss_dssp EE-SSCCEEEEEGG
T ss_pred Ec-CCCcEEEEecc
Confidence 55 56665555544
No 364
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.22 E-value=37 Score=28.76 Aligned_cols=197 Identities=11% Similarity=0.057 Sum_probs=101.8
Q ss_pred CCCceEEEEeCCCcEEEEeccCCce----eeeeecccccccccceE-EEEECCCCcEEEEEcCCeEEEEEcC---CCCCc
Q 014125 136 PTSCVFASTTRDHPIHLWDATTGLL----RCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVH---RPGRD 207 (430)
Q Consensus 136 ~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~v~d~~---~~~~~ 207 (430)
|+...+++.+.+|.|+--.+..-+. ...++. ...+. .+..+....+++.+..|.++-+... ..+..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke------~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD------TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT------TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC------CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC
Confidence 4566788999999998776542110 011111 11333 3334445556667788886666543 22111
Q ss_pred c--cccccccCCCCCCCcceEEE-EEcC-CCCceEEEecCCCeEEEEEcCCce--------eeEEeeccccCeEEEEEcc
Q 014125 208 F--EKYSTLKGNKEGQAGIMSAI-AFSP-THTGMLAIGSYSQTSAIYREDNME--------LLYVLHGQEGGVTHVQFSR 275 (430)
Q Consensus 208 ~--~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~ 275 (430)
. ....... .+. ....|.++ ...+ +....++..+.+|.++...+.... ....+.. .+.+..+....
T Consensus 77 a~G~~i~~~i-~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~ 153 (323)
T 1wp5_A 77 DLGQHIANII-PID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTD 153 (323)
T ss_dssp SCCEEGGGTS-CCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEEC
T ss_pred CCCcChhhcc-CCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeC
Confidence 0 0011111 111 22335544 3332 124568888999999998764321 1222332 24555555544
Q ss_pred CCCEEEEEecCCCeEEEEeCCCCceE-----EEEeecccCCccceEEEEEcCCCC-EEEEEccCCcEEEEEcCC
Q 014125 276 DGNYLYTGGRKDPYILCWDLRKAVQV-----VYKLYRSSEHTNQRILFDIEPSGR-HLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 276 ~~~~l~~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 343 (430)
....++..+ .+|.+..+....-... -..... ......|.++..-+++. .|++.+..|..+..++..
T Consensus 154 ~~~~i~l~T-~~G~~irf~~~ev~~~gR~a~GV~~i~-L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 154 GMNELFLVT-HNGYALWFDESEVSIVGVRAAGVKGMN-LKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SCSEEEEEE-TTSEEEEEEGGGSCBCCSSCCCEECCC-CCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEe-CCCcEEEEEHHHCcccCCCCcCEEEEE-eCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 555677777 7888888776432100 001111 12234455554444444 788888899888877653
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.08 E-value=42 Score=29.24 Aligned_cols=217 Identities=10% Similarity=-0.009 Sum_probs=101.7
Q ss_pred ceEEEEeCCCcEEEEeccC-CceeeeeecccccccccceEEEEECC--CCcEEEEEcCC--eEEEEEcCCCCCccccccc
Q 014125 139 CVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNK--SVRVFDVHRPGRDFEKYST 213 (430)
Q Consensus 139 ~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~ 213 (430)
..|..|...| +.+++... +..-....... ....|.+|++.| .+.+.+++..+ .-.||.....+..+.....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~---~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVF---LGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEES---TTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccC---CCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCc
Confidence 3566777777 55555432 22222211100 112788999998 56666665554 1123434444444443321
Q ss_pred ccCCCCC-------CCcceEEEEEcCCC-CceEEEecCCCeEEEEEcCCceeeEEeec-------------------ccc
Q 014125 214 LKGNKEG-------QAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHG-------------------QEG 266 (430)
Q Consensus 214 ~~~~~~~-------~~~~v~~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------------------~~~ 266 (430)
....... ....|.++++.|.+ ...+.++...+.|...+- .++.-..+.. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1000000 12357889998743 456666666666655432 2222222211 123
Q ss_pred CeEEEEEccC-CCEEEEEecCCCeEEEEeCCCCceEEEEeecc-cC---------CccceEEEEEcCC-CCEEEEEccCC
Q 014125 267 GVTHVQFSRD-GNYLYTGGRKDPYILCWDLRKAVQVVYKLYRS-SE---------HTNQRILFDIEPS-GRHLGTGGQDG 334 (430)
Q Consensus 267 ~i~~~~~~~~-~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~---------~~~~v~~~~~~~~-~~~l~~~~~dg 334 (430)
.+.+|.++|. ...|+++. .++.|...+- ........... .. ....+..+.++|. ...|..+...+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~-~~ggl~~s~D--gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGM-SSGGVFESTD--AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEE-ETBEEEEESS--TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEE-CCCCEEEECC--CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 5788999884 34555555 4454444322 11111111110 00 0134788999986 35666665544
Q ss_pred cEEEEEcCCCCeeccccc--cc---CCeeEEEEcCC
Q 014125 335 LVHIYDLQTGKWISGFQA--AA---DTVNGFSFHPF 365 (430)
Q Consensus 335 ~i~vwd~~~~~~~~~~~~--~~---~~v~~~~~~~~ 365 (430)
|+..+ +.++.-..+.. .. ..+..++++|.
T Consensus 255 -l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 255 -IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp -EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred -EEEeC-CCCCcceECCCCCCCCCccceEEEEECCC
Confidence 54443 22332222211 11 23567888763
No 366
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=73.27 E-value=68 Score=30.92 Aligned_cols=117 Identities=11% Similarity=0.052 Sum_probs=60.3
Q ss_pred eeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeecccccc--cccceEEEEECCCC--cEEEEEcC---
Q 014125 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTG--TKIFAGYN--- 193 (430)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--~~l~~~~d--- 193 (430)
.|..+++.|. +...++.+...+.|...+- .++.-..+....... ....+.+++++|.. .++++...
T Consensus 24 ~i~~i~~~p~------~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~ 96 (737)
T 2cn3_A 24 FMPGIVFNET------EKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTN 96 (737)
T ss_dssp CCCEEEECSS------STTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSS
T ss_pred eeeEEEECCC------CCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccc
Confidence 7888888653 2245666665665555442 232222222111100 12368899999843 34443321
Q ss_pred ----CeEEEEEcCCCCCcccccccccCCC--CCCCcceEEEEEcCCCCceEEEecCC
Q 014125 194 ----KSVRVFDVHRPGRDFEKYSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSYS 244 (430)
Q Consensus 194 ----~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d 244 (430)
+...||.-...+..+.......... ......+..++++|.+...+.++...
T Consensus 97 ~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 97 DWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 1356777776676665443211100 00012346789999777777777643
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=72.71 E-value=11 Score=35.12 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCEEEEEccC------------CcEEEEEcCCCCeecccccccC-CeeEEEEcCCCcEEEEe
Q 014125 315 RILFDIEPSGRHLGTGGQD------------GLVHIYDLQTGKWISGFQAAAD-TVNGFSFHPFLPMAASS 372 (430)
Q Consensus 315 v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~ 372 (430)
.-.|+|+|.|+++++-..+ +.+.+.+..+++....+.++.+ .++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999976654332 2466667777887666665543 69999999999988775
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.67 E-value=47 Score=28.79 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=79.0
Q ss_pred CCCCceEEEEeCCCcEEEEeccCC-------ceeeeeecccccccccceEEEEE-CCCCcEEEEEcCCeEEEEEcC---C
Q 014125 135 DPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAF-NPTGTKIFAGYNKSVRVFDVH---R 203 (430)
Q Consensus 135 ~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~d~~i~v~d~~---~ 203 (430)
-++...+++.+.+|.|+--.+..- +-...+.... ...+..+.. +....+++.+..|.++-+... .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke----~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE----EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC----CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC----CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcC
Confidence 356778999999999997655321 1111111111 113333333 334445557777877666543 2
Q ss_pred CCCccc--ccccccCCCCCCCcceEEEEEcC--CCCceEEEecCCCeEEEEEcCCce-------eeEEeeccccCeEEEE
Q 014125 204 PGRDFE--KYSTLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAIYREDNME-------LLYVLHGQEGGVTHVQ 272 (430)
Q Consensus 204 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~-------~~~~~~~~~~~i~~~~ 272 (430)
.+.... ....+. .+. ....|.++.... .....|+.++..|.++.-.+.... ....+.. ...+..+.
T Consensus 80 ~~r~a~G~~i~~ll-~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~ 156 (370)
T 3l6v_A 80 AGSNARGRPIINWI-PLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVA 156 (370)
T ss_dssp CCTTSCCEEGGGSC-CCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEE
T ss_pred CCcccCCcCHhhcc-CCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEE
Confidence 211110 001111 112 223455444322 134588899999999988764322 2222332 34455555
Q ss_pred EccCCCEEEEEecCCCeEEEEeCC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLR 296 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~ 296 (430)
.......++..+ ..|.+..+...
T Consensus 157 ~~~~~~~i~l~T-~~G~~irf~~~ 179 (370)
T 3l6v_A 157 LTDGDRDVLLFA-SNGKTVRFGES 179 (370)
T ss_dssp EECSCCEEEEEE-TTSEEEEEEGG
T ss_pred EeCCCceEEEEe-CCCeEEEEEcc
Confidence 544555677677 78887777653
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=69.64 E-value=51 Score=27.92 Aligned_cols=177 Identities=7% Similarity=-0.015 Sum_probs=85.8
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeC---CCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCC
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSL---PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (430)
+.+..+........|+..+..|.+.-... +.... ..........+.+..+..|.++.-.+. + .+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---------~a~G~~i~~~i~L~~~e~Iv~~~~~~~---~-~~ 105 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---------KDLGQHIANIIPIDRDEEIIKAIPIND---F-EL 105 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT---------TSCCEEGGGTSCCCTTCCEEEEEEESC---T-TS
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC---------CCCCcChhhccCCCCCCEEEEEEEecc---c-CC
Confidence 34444444445566677777787554443 22211 001111112223344455555432221 1 23
Q ss_pred CceEEEEeCCCcEEEEeccCCce------eeeeecccccccccceEEEEE-CCCCcEEEEEcCCeEEEEEcCCCCCcccc
Q 014125 138 SCVFASTTRDHPIHLWDATTGLL------RCTYRAYDAVDEITAAFSVAF-NPTGTKIFAGYNKSVRVFDVHRPGRDFEK 210 (430)
Q Consensus 138 ~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~d~~i~v~d~~~~~~~~~~ 210 (430)
+.+++.++.+|.++-..+..-.. +..+..... ..+..+.. .++..+++.+.+|.+..+....-....+.
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~----d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~ 181 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND----DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR 181 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT----CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC----CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC
Confidence 55788999999999988753221 111111111 24444433 44555666889999888887531110000
Q ss_pred cccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
..-...........|.++...+.+...+++.+..|..+..++..
T Consensus 182 a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 182 AAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 00001011122344556544442332677778888888777653
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=66.16 E-value=65 Score=27.89 Aligned_cols=130 Identities=10% Similarity=0.038 Sum_probs=64.4
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.+..+........|+..+..|.+.-+.... ++..............+.+..+..|.++.-... ..++.
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~e------ip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~----~~~~~ 114 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQ------LPEAGSNARGRPIINWIPLESGERVQAVLPVRE----YADNR 114 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGG------SCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESC----CCTTC
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHH------CcCCCcccCCcCHhhccCCCCCCEEEEEEEecc----CCCCc
Confidence 44555555555556666677777765443321 000000001111122223344555655543221 12356
Q ss_pred eEEEEeCCCcEEEEeccCCce-----eeeeecccccccccceEEEE-ECCCCcEEEEEcCCeEEEEEcCC
Q 014125 140 VFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVA-FNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
+|+.++..|.++-..+..-.. +..+.... ...+..+. ...+...++.+..|.+..+....
T Consensus 115 ~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~----~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 115 YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE----GDALVGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT----TCCEEEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC----CCEEEEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 899999999999988653221 11111111 11333333 34445566688888888887643
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=65.94 E-value=1e+02 Score=30.03 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=76.2
Q ss_pred CcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEEeec-------cccCeEEEEEccCC-CEEEEEecCCCe----
Q 014125 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-------QEGGVTHVQFSRDG-NYLYTGGRKDPY---- 289 (430)
Q Consensus 222 ~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~-~~l~~~~~~d~~---- 289 (430)
...|.+++++|.+...++++...+.|...+- .++.-..+.. ....+.+|+++|.. ..++++. .+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~-g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ-GRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE-CSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe-CccCCCcc
Confidence 3579999999977778888887777765542 2332222222 12469999999843 4455544 2211
Q ss_pred EEEEeCCCCceEEEEeecccC------CccceEEEEEcCC-CCEEEEEccCCcEEEEEcC-CC---Ceecccc---cccC
Q 014125 290 ILCWDLRKAVQVVYKLYRSSE------HTNQRILFDIEPS-GRHLGTGGQDGLVHIYDLQ-TG---KWISGFQ---AAAD 355 (430)
Q Consensus 290 i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~-~~---~~~~~~~---~~~~ 355 (430)
-.||.-............... ....+..++++|. ...++.+...+.| |... .| +.+..+. ....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCC
Confidence 334443333333323221100 0113456777775 3455566544433 3332 22 2222211 1124
Q ss_pred CeeEEEEcCCC-cEEEEeeC
Q 014125 356 TVNGFSFHPFL-PMAASSSG 374 (430)
Q Consensus 356 ~v~~~~~~~~~-~~l~s~~~ 374 (430)
.+..+.++|.. ..+..+..
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp CEEEEEECTTSTTCEEEEES
T ss_pred CeEEEEECCCCCCEEEEEEc
Confidence 57888998853 35555544
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.46 E-value=28 Score=32.22 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=43.3
Q ss_pred cceEEEEEcCCCCEEEEEcc------------CCcEEEEEcCCCCeecccccc-cCCeeEEEEcCCCcEEEEee
Q 014125 313 NQRILFDIEPSGRHLGTGGQ------------DGLVHIYDLQTGKWISGFQAA-ADTVNGFSFHPFLPMAASSS 373 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~ 373 (430)
+....+.|+++|.+.++... .+.|..++..++++...+.+. ...++.++|+||++.|..+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45667999999987773321 225777777778876555443 24689999999999887764
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.13 E-value=56 Score=31.22 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred eEEEEEccCCCEEEEEecCCCeEEEEeCCCCceEEEEeecccCCccceEEEEEcC---CCCEEEEEccCCcEEEEEcCCC
Q 014125 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEP---SGRHLGTGGQDGLVHIYDLQTG 344 (430)
Q Consensus 268 i~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~ 344 (430)
|.++.+. ..++++-+ .|.++|+|+++++......-.........-. ..| .+++|-..+ ..+.+|-....
T Consensus 224 Is~~~~~--~~fLftL~-~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~---L~~~~~~~~~Lrl~~--~~lv~y~P~~~ 295 (729)
T 3f7f_A 224 ISCKLFH--ERYLIVLT-QNCHLKIWDLTSFTLIQDYDMVSQSDSDPSH---FRKVEAVGEYLSLYN--NTLVTLLPLEN 295 (729)
T ss_dssp EEEEEET--TTEEEEEE-TTCEEEEEETTTTEEEEEEETTTTSCCCSSC---CCCCCSCCCCEEESS--SEEEEEETTTT
T ss_pred EEEeccC--CcEEEEEE-cCCeEEEEEcCCCceEEeeccccCccccccc---cCcccCcchhHhhee--eEEEEEecCCC
Q ss_pred CeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCCcccccc------CCCcEEEE
Q 014125 345 KWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFEDLHLSG------DENCVSVW 398 (430)
Q Consensus 345 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~~l~~~~------~d~~i~~w 398 (430)
...+.+.-....-..+.+.|... +-+.-.+.. +|....+...+ .++...+|
T Consensus 296 G~Fk~~~l~~~~~~~l~~~p~~~-ip~~~s~s~--iW~L~DF~lt~~~~l~~~~~~l~Lw 352 (729)
T 3f7f_A 296 GLFQMGTLLVDSSGILTYTFQNN-IPTNLSASA--IWSIVDLVLTRPLELNVEASYLNLI 352 (729)
T ss_dssp CEEEEEEEEC-----CEEECCCE-EECCCCTTT--CCEEEEEEEESCCCCSCSCCSEEEE
T ss_pred CeEEEEEEEEcCCCceEeeecCc-cCCCCCCCC--ceEEEeeEecccccccCCCCceEEE
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.81 E-value=17 Score=37.34 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=30.8
Q ss_pred cceEEEEEcCCCCEEEEEccCCcEEEEEcCCCCeeccc
Q 014125 313 NQRILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGF 350 (430)
Q Consensus 313 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 350 (430)
+.+.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 34455666778899999999999999999999876653
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.63 E-value=69 Score=26.92 Aligned_cols=179 Identities=11% Similarity=-0.014 Sum_probs=87.2
Q ss_pred CceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCce
Q 014125 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (430)
Q Consensus 61 ~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (430)
+.+..+........++..+..|.++-.....- +..............+.+..+..|.++.-.+. ..+...
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i------p~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~----~~~~~~ 116 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEI------KDSSRASKGQNISELINLGDQEEILTIKNSKD----LTDDAY 116 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS------CC-------CBGGGTSCCCTTCCEEEEEEESC----CCTTCE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHC------CCCCccCCCcChhhccCCCCCCEEEEEEEecc----CCCCCE
Confidence 44555555545567777788887665544311 00000001111112233344455555533221 113557
Q ss_pred EEEEeCCCcEEEEeccCCce-----eeeeecccccccccceEEEEE-CCCCcEEEEEcCCeEEEEEcCCCCCcccccccc
Q 014125 141 FASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAF-NPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (430)
Q Consensus 141 l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~ 214 (430)
|+..+..|.++...+..-.. +..+... ....+..+.. .++..+++++.+|.+..+....-....+...-.
T Consensus 117 ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~----~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv 192 (312)
T 1suu_A 117 LLLTTASGKIARFESTDFKAVKSRGVIVIKLN----DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV 192 (312)
T ss_dssp EEEEETTSEEEEEEGGGGCC----CEECBCCC----TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE
T ss_pred EEEEeCCCeEEEEEHHHhhccCCCcEEEEecC----CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe
Confidence 88889999999888753211 1111111 1124444443 445556668899999998875411100000000
Q ss_pred cCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCC
Q 014125 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (430)
Q Consensus 215 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 254 (430)
..........+..+..-. ....+++.+..|..+..++..
T Consensus 193 ~~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 193 CGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp ECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGG
T ss_pred EeEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHH
Confidence 000011234455555444 334577888889988888753
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=61.22 E-value=8.6 Score=39.39 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=30.1
Q ss_pred ceeEEEECcCCceEEEecCCCeEEEEeCCCCCCccc
Q 014125 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD 97 (430)
Q Consensus 62 ~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~ 97 (430)
.+.+++..++..+|++-+.|+++|||++.+++++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 456667778888999999999999999999876554
No 377
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.26 E-value=1.3e+02 Score=29.31 Aligned_cols=66 Identities=11% Similarity=0.285 Sum_probs=35.6
Q ss_pred eEEEEECCCC-cEEEEEc-CCeEEEEEcCCCCCcccccccccCCCCCCCcceEEEEEcCCCCceEEEecCC
Q 014125 176 AFSVAFNPTG-TKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244 (430)
Q Consensus 176 v~~~~~~~~~-~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 244 (430)
+..++++|.. ..+.++. .+. ||.....+..+.......... .....+..+.++|.+...++++..+
T Consensus 123 ~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~-~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 123 GERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAF-TNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCC-STTTCEEEEEECTTSTTCEEEEESS
T ss_pred eeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCcccc-CCCCCeEEEEECCCCCCEEEEEEcC
Confidence 4567787754 3444553 333 455555566665443221100 1124578899998666566666554
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.54 E-value=38 Score=31.56 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCCceEEEecCC------------CeEEEEEcCCceeeEEeecc-ccCeEEEEEccCCCEEEEEe
Q 014125 224 IMSAIAFSPTHTGMLAIGSYS------------QTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 224 ~v~~~~~~~~~~~~l~~~~~d------------g~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 284 (430)
..--|+|+| .++++++-..+ ..+.+.+..+++....+... ...++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 456789999 45555543322 24666677777766655544 35899999999999888765
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.46 E-value=63 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=42.2
Q ss_pred cceEEEEEcCCCCceEEEecC------------CCeEEEEEcCCceeeEEeecc-ccCeEEEEEccCCCEEEEEe
Q 014125 223 GIMSAIAFSPTHTGMLAIGSY------------SQTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGG 284 (430)
Q Consensus 223 ~~v~~~~~~~~~~~~l~~~~~------------dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 284 (430)
.....|.|.++ +.+.++... ...|..++..+++....+... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999994 555553221 225777777777766555433 35689999999999988876
No 380
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.08 E-value=94 Score=25.51 Aligned_cols=210 Identities=10% Similarity=-0.030 Sum_probs=103.1
Q ss_pred CCceeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCc
Q 014125 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (430)
Q Consensus 60 ~~~v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (430)
.+.+..+.-.....+|+.-+..|.++--.+.. ++... .. . + +..+..|..+.- + .+ +..
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~------lp~~~-----~~-~--l-l~~~e~i~~v~~-~---~~--~~~ 81 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ------ALQGS-----KV-S--L-KSREEKIVGAFI-R---EK--FGN 81 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHH------HHTSE-----EC-C--C-SSTTCCEEEEEE-G---GG--SCS
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh------CccCc-----cc-c--c-CCCCCEEEEEEC-C---cC--CCC
Confidence 34566665555556677777788765432210 00000 00 0 2 444556665532 1 12 356
Q ss_pred eEEEEeCCCcEEEEeccCCceeee--eecccccccccceEEEEECCCC-cEEEEEcCCeEEEEEcCCCCCcccc-ccccc
Q 014125 140 VFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAFNPTG-TKIFAGYNKSVRVFDVHRPGRDFEK-YSTLK 215 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~v~d~~~~~~~~~~-~~~~~ 215 (430)
.++..+.+|.++-..+..-. ... ..... ......+..+...... ..++.+..|.+..+....-....+. .....
T Consensus 82 ~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~-lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 82 RLLLATKKGYVKKIPLAEFE-YKAQGMPIIK-LTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp EEEEEETTSEEEEEEGGGTT-TCSTTEECSC-CCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred EEEEEeCCCEEEEEEHHHhh-hhcCCeEEEe-cCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 89999999999999876532 110 00000 0111244444444333 4555788999888876431110000 00000
Q ss_pred CCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-------eeeEEeeccccCeEEEEEccCCCEEEEEecCCC
Q 014125 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 216 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
..+. ....|..+...+ ....++..+..|.++...+... +-+..+ ...+.+..+........++..+ .+|
T Consensus 160 i~L~-~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t-~~G 235 (276)
T 3no0_A 160 IKLE-KNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITT-KNG 235 (276)
T ss_dssp CCCC-TTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEE-TTS
T ss_pred EccC-CCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEc-CCC
Confidence 1111 224455555444 3457788888999888876432 112222 1233444443333333455555 567
Q ss_pred eEEE--EeCC
Q 014125 289 YILC--WDLR 296 (430)
Q Consensus 289 ~i~i--~d~~ 296 (430)
.+.. ++..
T Consensus 236 ~~ir~~~~~~ 245 (276)
T 3no0_A 236 KAFYDKINQK 245 (276)
T ss_dssp CEEEEEEEGG
T ss_pred eEEEeeeCHH
Confidence 6666 6554
No 381
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=52.97 E-value=1.1e+02 Score=26.44 Aligned_cols=196 Identities=10% Similarity=-0.024 Sum_probs=94.8
Q ss_pred eEEEEeCCCcEEEEeccCC-c-------eeeeeecccccccccceEEEEECCCCcEE-EEEcCCeEEEEEcCCCCCcc--
Q 014125 140 VFASTTRDHPIHLWDATTG-L-------LRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDF-- 208 (430)
Q Consensus 140 ~l~~~~~dg~i~vwd~~~~-~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~v~d~~~~~~~~-- 208 (430)
..+.-..||.|..|-.... + ............ ...+..++.+.-..+. +...+|.|+.|-....+..-
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQ-HVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGT-TSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEccccc-CCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 4555567888888864321 1 111111111100 1133445555444444 46789999999765422110
Q ss_pred --cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCc-e----------eeEEeec-cccCeEEEEEc
Q 014125 209 --EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-E----------LLYVLHG-QEGGVTHVQFS 274 (430)
Q Consensus 209 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~----------~~~~~~~-~~~~i~~~~~~ 274 (430)
.....+..........|..++. +....++-..+|.|+.|-.... + ....+.. ....|..++..
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 0000000000011124666665 4446666678999999965321 1 1111111 12356667664
Q ss_pred cCCCEEEEEecCCCeEEEEeCCCCce--------EEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcC
Q 014125 275 RDGNYLYTGGRKDPYILCWDLRKAVQ--------VVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQ 342 (430)
Q Consensus 275 ~~~~~l~~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 342 (430)
....+.++.. .||.|+.|-.....+ ...+..........|..++.. ..+.+.-..||.|+.|-..
T Consensus 220 ~g~~~t~~l~-~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 220 SGDAQTLCLT-DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CSSCEEEEEE-TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEc-cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCC
Confidence 4334555556 799999996542111 111111111122245555543 3455555788999999764
No 382
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.65 E-value=1.3e+02 Score=24.26 Aligned_cols=146 Identities=9% Similarity=-0.065 Sum_probs=74.0
Q ss_pred eEEEecCCCeEEEEEcCCcee-eEEeeccccCeEEEEEccCCCEEEEEecCCCeEEEEeCC---CCceEEEE---eeccc
Q 014125 237 MLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR---KAVQVVYK---LYRSS 309 (430)
Q Consensus 237 ~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i~d~~---~~~~~~~~---~~~~~ 309 (430)
.+++.+.+|.|+--....... ...+... ..+..+........|+..+ ..|.++-+... .....-.. ... .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T-~~Gr~~~~~~~elp~~r~~G~~i~~~i~-L 80 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVD-STGRSYAIDPITLPSARGQGEPLTGKLT-L 80 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEE-TTSEEEEECGGGSCCSSSCCEEGGGTCC-C
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEe-CCCeEEEEEHHHCCCcCCCCeEeeeeec-C
Confidence 556677788887655433211 1122222 3344443333344455555 68876655432 21110000 111 1
Q ss_pred CCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC-------CCeecccccccCCeeEEEEc-CCCcEEEEeeCCceeeec
Q 014125 310 EHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT-------GKWISGFQAAADTVNGFSFH-PFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 310 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~~~vw 381 (430)
.....|.++....++.+|+.++..|.++...+.. +.....++. .+.+..+... .....++..+.+|.+...
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 2244566664434567788899999999988743 222333332 2344444444 344567777777776655
Q ss_pred CCCcc
Q 014125 382 DFEDL 386 (430)
Q Consensus 382 ~~~~l 386 (430)
..+.+
T Consensus 160 ~~~ei 164 (256)
T 1zvt_A 160 PVSDL 164 (256)
T ss_dssp EGGGS
T ss_pred EHHHC
Confidence 44333
No 383
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=36.59 E-value=2.2e+02 Score=24.94 Aligned_cols=256 Identities=13% Similarity=-0.029 Sum_probs=118.3
Q ss_pred eeEEEECcCCceEEEecCCCeEEEEeCCCCCCcccccccccccccCcccceeeecCCCeeeeeeeccccCccCCCCceEE
Q 014125 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (430)
Q Consensus 63 v~~~~~sp~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (430)
|..|+.. +...+.-..||.|..|-......+..-.... . .......+.....|..++- .....+
T Consensus 77 v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~----~-~~~~P~~v~~~~~i~~va~---------G~~hs~ 140 (423)
T 3mvd_K 77 AVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSED----G-SESKPDLIDLPGKALCISA---------GDSHSA 140 (423)
T ss_dssp EEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCST----T-SSSSCEECCCSSCEEEEEE---------CSSEEE
T ss_pred ceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCC----c-cccCCeEEcCCCCEEEEEc---------CcCeEE
Confidence 5555544 3455556778999999765432221110000 0 0001111112234555554 223455
Q ss_pred EEeCCCcEEEEec--c-CCceee-----eeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCccccc---
Q 014125 143 STTRDHPIHLWDA--T-TGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY--- 211 (430)
Q Consensus 143 ~~~~dg~i~vwd~--~-~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~--- 211 (430)
.-..||.|..|-. . .++.-. ...... ......|..++... ...++...+|.|+.|-....+..-...
T Consensus 141 al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~-~~~~~~i~~va~G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~~~ 218 (423)
T 3mvd_K 141 CLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPID-LMEGTVCCSIASGA-DHLVILTTAGKVFTVGCAEQGQLGRLSERS 218 (423)
T ss_dssp EEETTSCEEEEECEECSSSEEESBTTBCEEEEEE-SSTTCCEEEEEECS-SEEEEEETTSCEEEEECCTTSTTSSCCTTT
T ss_pred EEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeE-ecCCCcEEEEecCC-CeEEEEecCCeEEEeeCCcCCccCCCcccc
Confidence 5578899999975 2 222100 000000 01112455665432 234446689999999765432211100
Q ss_pred ------------ccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-----------eeEEeeccccCe
Q 014125 212 ------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----------LLYVLHGQEGGV 268 (430)
Q Consensus 212 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~~~~~i 268 (430)
.............|..++... ...++.-..+|.|+.|-..... ...........|
T Consensus 219 ~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~--~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v 296 (423)
T 3mvd_K 219 ISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN--YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDI 296 (423)
T ss_dssp TTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET--TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSE
T ss_pred cccccccccccccCCeEEeecCCccEEEEEECC--cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCe
Confidence 000000011122455555532 2233333688999999643211 111111112356
Q ss_pred EEEEEccCCCEEEEEecCCCeEEEEeCCCCc--------eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEE
Q 014125 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAV--------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYD 340 (430)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 340 (430)
..|+.. ..+.++.. .||.|+.|-..... ...............|..++... .+.+.-..||.|+.|=
T Consensus 297 ~~ia~G--~~ht~alt-~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG 371 (423)
T 3mvd_K 297 RHIAGG--QHHTVILT-TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWG 371 (423)
T ss_dssp EEEEEC--SSEEEEEE-TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEE
T ss_pred EEEEcc--cCeEEEEe-CCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEEC
Confidence 666543 33444455 79999999653211 00101111122222566666543 3444457899999997
Q ss_pred cCC
Q 014125 341 LQT 343 (430)
Q Consensus 341 ~~~ 343 (430)
...
T Consensus 372 ~n~ 374 (423)
T 3mvd_K 372 SGV 374 (423)
T ss_dssp CCT
T ss_pred CCC
Confidence 664
No 384
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=27.39 E-value=3e+02 Score=23.72 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=95.5
Q ss_pred CCceEEEEeCCCcEEEEeccCC-c-------eeeeeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCCcc
Q 014125 137 TSCVFASTTRDHPIHLWDATTG-L-------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208 (430)
Q Consensus 137 ~~~~l~~~~~dg~i~vwd~~~~-~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~ 208 (430)
.....+.-..||.|..|-.... + ........... ....|..++.. ....++...+|.|+.|-....+..-
T Consensus 115 G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l-~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG 192 (389)
T 3kci_A 115 GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLG 192 (389)
T ss_dssp TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG-TTSCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEeccc-CCCeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcC
Confidence 3445666678999999964321 1 00111111100 01145555543 2234446688999999765422110
Q ss_pred ----cccccccCCCCCCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCce-----------eeEEeecc-ccCeEEEE
Q 014125 209 ----EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----------LLYVLHGQ-EGGVTHVQ 272 (430)
Q Consensus 209 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~~-~~~i~~~~ 272 (430)
.....+..........+..++... +....++-..+|.|+.|-..... ....+... ...|..++
T Consensus 193 ~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~ 271 (389)
T 3kci_A 193 HSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE 271 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEe
Confidence 000000000011123466666543 23455666788999999643211 11112211 12355555
Q ss_pred EccCCCEEEEEecCCCeEEEEeCCCCc--------eEEEEeecccCCccceEEEEEcCCCCEEEEEccCCcEEEEEcCC
Q 014125 273 FSRDGNYLYTGGRKDPYILCWDLRKAV--------QVVYKLYRSSEHTNQRILFDIEPSGRHLGTGGQDGLVHIYDLQT 343 (430)
Q Consensus 273 ~~~~~~~l~~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 343 (430)
.. ..+.++.. .+|.|+.|-..... ....+..........|..++.. ..+.+.-..||.|+.|=.+.
T Consensus 272 ~G--~~hs~alt-~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 272 CG--SQFSVALT-KSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EE--TTEEEEEE-TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CC--CCEEEEEe-CCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 43 33444445 79999999654211 1111111111122346566543 34555567899999998764
No 385
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.09 E-value=2.1e+02 Score=26.01 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=42.3
Q ss_pred ceEEEEEcCC-----CCceEEEecCCCeEEEEEcC-Cc-------eeeEEeec--cccCeEEEEEccCCCEEEEEecCCC
Q 014125 224 IMSAIAFSPT-----HTGMLAIGSYSQTSAIYRED-NM-------ELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDP 288 (430)
Q Consensus 224 ~v~~~~~~~~-----~~~~l~~~~~dg~v~~~d~~-~~-------~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~ 288 (430)
..++|+...- +-..+..|+.+|.|.-.-+. .+ ..+..+.. ...+|..|.++++..+|++++ .++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s-~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGS-TAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEB-SSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEE-CCe
Confidence 3566666531 23467788999987544332 21 12223332 346899999999999999998 666
Q ss_pred eEEE
Q 014125 289 YILC 292 (430)
Q Consensus 289 ~i~i 292 (430)
.+++
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.05 E-value=1.6e+02 Score=19.94 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=15.4
Q ss_pred EEEECCCCcEEEEEcCCeEEEEEcCC
Q 014125 178 SVAFNPTGTKIFAGYNKSVRVFDVHR 203 (430)
Q Consensus 178 ~~~~~~~~~~l~~~~d~~i~v~d~~~ 203 (430)
.+.+..+|.+++...++.+ +|...+
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEeCCCcEEEECCCCCE-EEECCC
Confidence 5667777777775544544 676543
No 387
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=24.35 E-value=1.6e+02 Score=19.65 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=15.0
Q ss_pred EEEECCCCcEEEEEcCCeEEEEEcC
Q 014125 178 SVAFNPTGTKIFAGYNKSVRVFDVH 202 (430)
Q Consensus 178 ~~~~~~~~~~l~~~~d~~i~v~d~~ 202 (430)
.+.+..+|.+++...++. .+|...
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~ 77 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASH 77 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECC
T ss_pred EEEEeCCccEEEECCCcE-EEEEec
Confidence 467778887776554444 367653
No 388
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.72 E-value=2.3e+02 Score=25.73 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=41.7
Q ss_pred eEEEEEcC----CCC--EEEEEccCCcEEEEEcC-CCC-------eeccccc--ccCCeeEEEEcCCCcEEEEeeCCcee
Q 014125 315 RILFDIEP----SGR--HLGTGGQDGLVHIYDLQ-TGK-------WISGFQA--AADTVNGFSFHPFLPMAASSSGHRRF 378 (430)
Q Consensus 315 v~~~~~~~----~~~--~l~~~~~dg~i~vwd~~-~~~-------~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~~ 378 (430)
.++++... ++. .++.|+.+|.|.-.-+. .+. .+..+.. ...+|..|.++++...|..++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 45555543 243 47788999986543332 211 2222332 34689999999999999999987776
Q ss_pred ee
Q 014125 379 PV 380 (430)
Q Consensus 379 ~v 380 (430)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 389
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.47 E-value=1.9e+02 Score=19.60 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=36.2
Q ss_pred EEEEEcCCCCEEEEEccCCcEEEEEcCCCCeecccccccCCeeEEEEcCCCcEEEEeeCCceeeecCCC---------cc
Q 014125 316 ILFDIEPSGRHLGTGGQDGLVHIYDLQTGKWISGFQAAADTVNGFSFHPFLPMAASSSGHRRFPVDDFE---------DL 386 (430)
Q Consensus 316 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~~~vw~~~---------~l 386 (430)
..+.+..+|.+++... ++ +|...+... ..-..+.+..+|++++... ++...+|... ..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~--------~~~~~l~l~~dGNLVl~~~-~~~~~vW~S~t~~~~~~~~~~ 88 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR--------GVDCTLRLNNRGQLEIHSA-NSNTPVWVYPRSVNTVRGNYA 88 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS--------CSSCEEEECTTSCEEEECS-SCSSCSEEESSSCCCCSSCCE
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC--------CcCEEEEEcCCCcEEEEeC-CCCEEEEEeccccCCCCcCEE
Confidence 3455566666555432 22 666544211 1123567777888776543 3333466221 12
Q ss_pred ccccCCCcEEEEe
Q 014125 387 HLSGDENCVSVWS 399 (430)
Q Consensus 387 ~~~~~d~~i~~w~ 399 (430)
+.-.+||.+.+++
T Consensus 89 l~Lq~dGNlvly~ 101 (111)
T 3mez_A 89 ATLGPDQHVTIYG 101 (111)
T ss_dssp EEECTTSCEEEEC
T ss_pred EEECCCCeEEEec
Confidence 3445677777774
No 390
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=22.09 E-value=5.4e+02 Score=24.82 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=78.4
Q ss_pred cCCCeeeeeeeccccCccCCCCceEEEEeCCCcEEEEeccCCceeeeeeccc-----ccc--cccceEEEEECCC--CcE
Q 014125 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-----AVD--EITAAFSVAFNPT--GTK 187 (430)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~--~~~~v~~~~~~~~--~~~ 187 (430)
..++.|.++.+.|. +...++.+...|.|...+ ..|+.-..+.... ... ....+.+++++|. +.+
T Consensus 18 g~~g~i~~i~~~p~------~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~ 90 (763)
T 3a0f_A 18 SGGGFISGLVAHPT------EKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRL 90 (763)
T ss_dssp CBCSCEEEEEECSS------STTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCE
T ss_pred cCCCceeEEEeCCC------CCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEE
Confidence 45578999999664 224666666556544332 1232222211100 000 1235888999884 334
Q ss_pred EEEEc-----CCeEEEEEcCCCCCcccccccccCCCC--CCCcceEEEEEcCCCCceEEEecCCCeEEEEEcCCceeeEE
Q 014125 188 IFAGY-----NKSVRVFDVHRPGRDFEKYSTLKGNKE--GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260 (430)
Q Consensus 188 l~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 260 (430)
+++.. .....||.-...+..+.........-. ........++++|.+...+.++...+.|.. ....++.-..
T Consensus 91 ~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~ 169 (763)
T 3a0f_A 91 YLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSR 169 (763)
T ss_dssp EEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEE
T ss_pred EEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccc
Confidence 44332 123556666666666654432110000 001112468888866666666665544332 2222332222
Q ss_pred eec------cccCeEEEEEccCC-CEEEEEecCCC
Q 014125 261 LHG------QEGGVTHVQFSRDG-NYLYTGGRKDP 288 (430)
Q Consensus 261 ~~~------~~~~i~~~~~~~~~-~~l~~~~~~d~ 288 (430)
+.. ....+..|+++|.. ..++++. .++
T Consensus 170 ~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~-~~~ 203 (763)
T 3a0f_A 170 MNQLPDSSTYGIGIISVIFDPKNVGTAYVAS-HAV 203 (763)
T ss_dssp CTTSCCCSCTTTCEEEEEECSSSTTCEEEEE-SST
T ss_pred cccCcccCCCccceEEEEECCCCCCEEEEEE-eCC
Confidence 211 11347788998854 4566666 444
No 391
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.01 E-value=1.4e+02 Score=27.45 Aligned_cols=68 Identities=7% Similarity=-0.093 Sum_probs=44.5
Q ss_pred ceEEEEEcCCC--CEEEEEccCCcEEEEEcCCCC----eeccccc--ccCCee-EEEEcCCCcEEEEeeCCceeeec
Q 014125 314 QRILFDIEPSG--RHLGTGGQDGLVHIYDLQTGK----WISGFQA--AADTVN-GFSFHPFLPMAASSSGHRRFPVD 381 (430)
Q Consensus 314 ~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~----~~~~~~~--~~~~v~-~~~~~~~~~~l~s~~~d~~~~vw 381 (430)
..++++....+ ..++.|+.+|.|.-..+.... .+..+.. ...+|. .|.++++...|..++.++.++|-
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvp 477 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVP 477 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccceee
Confidence 35555555444 347788999987655554221 2222221 245785 89999999999999988887775
No 392
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.50 E-value=4e+02 Score=25.26 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=42.0
Q ss_pred eEEEEEc----cCCC---EEEEEecCCCeEE-EEeCCCCceEEEEeecccCCccceEEEEEcCCC--CEEEEEccCCcEE
Q 014125 268 VTHVQFS----RDGN---YLYTGGRKDPYIL-CWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSG--RHLGTGGQDGLVH 337 (430)
Q Consensus 268 i~~~~~~----~~~~---~l~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~ 337 (430)
.++|+.. .+++ .++.|. .+|.|. +............... .....+|..+.++++. .+|++++..+.++
T Consensus 399 ~T~iaVd~v~~~~~~~~tV~flGT-~~G~l~Kvv~~~~~~~~~ee~~~-~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~ 476 (663)
T 1olz_A 399 YTQIVVDRTQALDGTVYDVMFVST-DRGALHKAISLEHAVHIIEETQL-FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQ 476 (663)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEE-TTSEEEEEEECSSSEEEEEEEEC-CTTCCCCCEEEECCSSSSCEEEEECSSCEEE
T ss_pred eEEEEEEEEeccCCCceEEEEEEc-CCcEEEEEEecCCCceEEEEecc-cCCCCcceeeEeccCCCccEEEEEEcCeEEE
Confidence 4566653 3333 566777 888764 3344333222222222 2345678889999988 8999998887665
Q ss_pred E
Q 014125 338 I 338 (430)
Q Consensus 338 v 338 (430)
|
T Consensus 477 v 477 (663)
T 1olz_A 477 A 477 (663)
T ss_dssp E
T ss_pred E
Confidence 5
No 393
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.01 E-value=3e+02 Score=25.31 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=41.0
Q ss_pred CeEEEEEccCCC--EEEEEecCCCeEEEEeCCCCce--EEEEeecccCCccceE-EEEEcCCCCEEEEEccCCcEEE
Q 014125 267 GVTHVQFSRDGN--YLYTGGRKDPYILCWDLRKAVQ--VVYKLYRSSEHTNQRI-LFDIEPSGRHLGTGGQDGLVHI 338 (430)
Q Consensus 267 ~i~~~~~~~~~~--~l~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~v 338 (430)
.+++|+....+. .++.|. .+|.|.-..+..... .............+|. .+.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT-~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGT-KSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEE-TTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEc-CCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 356666654333 466677 888776544432211 1111111122245674 7889999999999988765554
Done!