BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014126
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG+ NV + A PQS + + V+
Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVF--AMPQSGTGVSVEAVD 84
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
QA M +L TGR V+GWYHSHP S VDV TQ ++ L++
Sbjct: 85 D--------VFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRA 136
Query: 124 IGLIFSCFSEDANKVGRIQVIAFQSSD 150
+ ++ G++ + AF+ D
Sbjct: 137 VAVVVDPIQSVK---GKVVIDAFRLID 160
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5
pdb|4F7O|B Chain B, Crystal Structure Of Csn5
Length = 257
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
K+S L + HA S E+ GL LG ++ + A P ++ R +
Sbjct: 55 CKISALALLKXVXHARSGGNLEVXGLXLGKVDGETXIIXDSF---ALPVEGTETRVNAQA 111
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
E AA A ++ GR IGWYHSHP S +DV TQ + Q F+
Sbjct: 112 AAYEYXAAYIENAKQV----GRLENAIGWYHSHPGYGCWLSGIDVSTQXLNQQFQEPFVA 167
Query: 126 LI 127
++
Sbjct: 168 VV 169
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp
Length = 178
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 27 EIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVLTG 86
E G+L G + H++ +T +I QS D N E+L Q D +T
Sbjct: 34 ETCGILCGKLTHNEF-TITHVI--VPKQSAGPDYCDM--ENVEELFNVQDQHDLLT---- 84
Query: 87 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFS 129
+GW H+HP T S VD+ T YQL+ I ++ S
Sbjct: 85 -----LGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCS 122
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|D Chain D, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
Length = 178
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 30 GLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVLTGRTT 89
G+L G + H++ +T +I QS D N E+L Q D +T
Sbjct: 37 GILCGKLTHNEF-TITHVI--VPKQSAGPDYCDM--ENVEELFNVQDQHDLLT------- 84
Query: 90 RVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFS 129
+GW H+HP T S VD+ T YQL+ I ++ S
Sbjct: 85 --LGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCS 122
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic
Domain Of Amsh
Length = 211
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 92 IGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFS 129
+GW H+HP T S VD+ T YQ++ + ++ S
Sbjct: 118 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 155
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
Length = 187
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 92 IGWYHSHPHITVLPSHVDVRTQAMYQLL 119
+GW H+HP T S VD+ T YQ++
Sbjct: 94 LGWIHTHPTQTAFLSSVDLHTHCSYQMM 121
>pdb|2KCQ|A Chain A, Solution Structure Of Protein Sru_2040 From Salinibacter
Ruber (Strain Dsm 13855) . Northeast Structural Genomics
Consortium Target Srr106
Length = 153
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
+K + D+ H EE G LLG + + V AL + RS++R R E
Sbjct: 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATN--RRSEQRTRRYE 58
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
+ AA A A + V+G YHSHP PS D+ GF
Sbjct: 59 LTADDYRAADAAAQEQGL------DVVGVYHSHPDHPARPSATDLEEATF-----PGFTY 107
Query: 126 LIFSC 130
+I S
Sbjct: 108 VIVSV 112
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ M+ + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENMNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 71 LAAASAQADRMTVLTGR-------TTRVIGWYHSHPHI 101
+ A AQ+DRM + G +GWY++HPH
Sbjct: 101 IYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHF 138
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 71 LAAASAQADRMTVLTGR-------TTRVIGWYHSHPHI 101
+ A AQ+DRM + G +GWY++HPH
Sbjct: 101 IYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHF 138
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 242 GDLSNAIGDIDPMDMSESMQE--------AMHRSNLDMSGAEYVRKEIPLHVLPT 288
G +S+ I DMSE MQ+ AM + N++ A Y++KE PT
Sbjct: 4 GSMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPT 58
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGADFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 286 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 330
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 213 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 272
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 273 -GAEYVRKEI 281
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,448,443
Number of Sequences: 62578
Number of extensions: 433193
Number of successful extensions: 888
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 36
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)