Query 014126
Match_columns 430
No_of_seqs 192 out of 1116
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 3.3E-28 1.1E-32 240.7 16.0 138 2-151 23-161 (306)
2 2kcq_A MOV34/MPN/PAD-1 family; 99.9 1E-27 3.4E-32 214.1 11.5 141 6-166 1-143 (153)
3 2kks_A Uncharacterized protein 99.9 4.5E-27 1.5E-31 208.4 15.5 136 5-163 1-136 (146)
4 2znr_A AMSH-like protease; met 99.9 1.2E-25 4.3E-30 206.8 10.9 130 2-154 7-139 (178)
5 3rzv_A STAM-binding protein; u 99.9 1.9E-22 6.5E-27 190.8 11.0 130 2-154 40-172 (211)
6 2o95_A 26S proteasome non-ATPa 99.9 2.8E-21 9.6E-26 177.1 15.6 131 2-149 6-142 (187)
7 1oi0_A AF2198, hypothetical pr 99.8 5.7E-20 1.9E-24 158.7 10.3 108 5-148 3-111 (124)
8 4e0q_A COP9 signalosome comple 99.7 4.1E-18 1.4E-22 151.6 10.0 129 3-148 5-138 (141)
9 4b4t_U RPN8, 26S proteasome re 99.4 2.3E-12 7.9E-17 128.8 17.0 131 2-149 4-140 (338)
10 2og4_A PRE-mRNA-splicing facto 99.0 6.8E-10 2.3E-14 107.5 10.2 128 4-152 38-168 (254)
11 2p8r_A PRP8, PRE-mRNA-splicing 98.9 7.8E-09 2.7E-13 101.0 12.2 126 4-151 39-170 (273)
12 3sbg_A PRE-mRNA-splicing facto 98.1 8.3E-06 2.8E-10 85.6 9.2 127 5-153 350-480 (565)
13 2qlc_A DNA repair protein RADC 88.2 3.4 0.00012 35.7 9.9 85 10-113 8-92 (126)
14 2wq1_A General control protein 61.2 18 0.00061 24.8 5.0 29 357-385 2-30 (33)
15 3mq9_A Bone marrow stromal ant 54.2 21 0.00071 35.8 6.6 72 306-385 388-459 (471)
16 2lq4_p Lysophosphatidic acid r 50.3 0.93 3.2E-05 35.6 -3.1 29 358-386 2-30 (80)
17 1nkp_B MAX protein, MYC proto- 48.2 28 0.00094 27.4 5.1 31 357-387 49-79 (83)
18 1kd8_B GABH BLL, GCN4 acid bas 47.5 39 0.0013 23.5 5.0 29 357-385 3-31 (36)
19 3c3f_A Alpha/beta peptide with 46.3 43 0.0015 23.0 5.0 29 357-385 3-31 (34)
20 2yy0_A C-MYC-binding protein; 45.0 38 0.0013 25.1 5.1 31 357-387 21-51 (53)
21 2oqq_A Transcription factor HY 44.9 44 0.0015 24.0 5.1 26 360-385 15-40 (42)
22 2oxj_A Hybrid alpha/beta pepti 43.8 50 0.0017 22.7 5.0 29 357-385 3-31 (34)
23 1kd8_A GABH AIV, GCN4 acid bas 42.0 37 0.0013 23.6 4.2 30 357-386 3-32 (36)
24 3c3g_A Alpha/beta peptide with 39.9 63 0.0021 22.1 5.0 29 357-385 2-30 (33)
25 1gk7_A Vimentin; intermediate 38.1 62 0.0021 22.6 5.0 30 356-385 7-36 (39)
26 1dip_A Delta-sleep-inducing pe 37.7 1.6E+02 0.0054 23.6 8.2 30 356-385 16-45 (78)
27 2oqq_A Transcription factor HY 36.8 56 0.0019 23.5 4.6 30 357-386 5-34 (42)
28 3c3g_A Alpha/beta peptide with 34.7 36 0.0012 23.3 3.2 25 363-387 1-25 (33)
29 1uo4_A General control protein 33.1 55 0.0019 22.5 3.9 29 357-385 3-31 (34)
30 1wt6_A Myotonin-protein kinase 32.0 73 0.0025 25.9 5.1 32 356-387 39-70 (81)
31 2oxj_A Hybrid alpha/beta pepti 31.2 44 0.0015 23.0 3.2 25 363-387 2-26 (34)
32 1nlw_A MAD protein, MAX dimeri 30.8 77 0.0026 25.1 5.1 37 345-386 42-78 (80)
33 3mq9_A Bone marrow stromal ant 30.5 87 0.003 31.2 6.7 25 362-386 443-467 (471)
34 3m48_A General control protein 30.3 61 0.0021 22.2 3.7 28 358-385 3-30 (33)
35 3nmd_A CGMP dependent protein 30.1 79 0.0027 25.1 5.0 29 357-385 35-63 (72)
36 3c3f_A Alpha/beta peptide with 29.5 49 0.0017 22.7 3.2 26 362-387 1-26 (34)
37 1ci6_A Transcription factor AT 29.3 86 0.003 23.7 5.0 28 358-385 26-53 (63)
38 3m48_A General control protein 29.1 43 0.0015 22.9 2.8 25 363-387 1-25 (33)
39 1jnm_A Proto-oncogene C-JUN; B 28.7 96 0.0033 23.1 5.1 31 356-386 23-53 (62)
40 2r2v_A GCN4 leucine zipper; co 27.6 1.3E+02 0.0044 20.7 5.0 29 357-385 3-31 (34)
41 3oja_B Anopheles plasmodium-re 26.4 44 0.0015 34.2 3.8 44 359-402 548-593 (597)
42 3seo_A VOPL C terminal domain 25.6 52 0.0018 31.3 3.7 45 331-375 188-237 (241)
43 1yf2_A Type I restriction-modi 25.4 83 0.0028 29.9 5.3 31 359-389 390-420 (425)
44 3ni0_A Bone marrow stromal ant 25.3 2.4E+02 0.0082 23.6 7.2 20 367-386 65-84 (99)
45 2wq1_A General control protein 25.3 66 0.0022 22.0 3.2 25 363-387 1-25 (33)
46 2bni_A General control protein 25.0 61 0.0021 22.3 3.0 26 358-383 4-29 (34)
47 2bni_A General control protein 24.9 85 0.0029 21.6 3.7 26 362-387 1-26 (34)
48 1ydx_A Type I restriction enzy 24.6 1.1E+02 0.0038 29.4 6.1 32 359-390 366-397 (406)
49 1t2k_D Cyclic-AMP-dependent tr 24.5 1.2E+02 0.0041 22.5 5.0 29 357-385 24-52 (61)
50 1nkp_A C-MYC, MYC proto-oncoge 24.4 1.1E+02 0.0036 24.6 5.0 30 357-386 54-83 (88)
51 3viq_B Mating-type switching p 24.3 70 0.0024 26.1 3.8 29 358-386 4-32 (85)
52 2gkw_A TNF receptor-associated 24.1 90 0.0031 27.8 5.0 29 357-385 2-30 (192)
53 1kd8_B GABH BLL, GCN4 acid bas 23.7 71 0.0024 22.2 3.2 26 362-387 1-26 (36)
54 2dgc_A Protein (GCN4); basic d 23.0 1E+02 0.0034 23.4 4.3 24 362-385 30-53 (63)
55 2zqm_A Prefoldin beta subunit 22.4 1.2E+02 0.0042 24.4 5.1 27 357-383 72-98 (117)
56 4h8s_A DCC-interacting protein 22.4 2.6E+02 0.0088 27.5 8.4 58 333-390 225-282 (407)
57 1uo4_A General control protein 21.9 76 0.0026 21.8 3.0 25 363-387 2-26 (34)
58 2fxo_A Myosin heavy chain, car 21.0 1.2E+02 0.0042 25.7 5.0 30 356-385 84-113 (129)
59 2hy6_A General control protein 20.8 1.5E+02 0.005 20.4 4.2 28 358-385 4-31 (34)
60 2wt7_A Proto-oncogene protein 20.5 1.6E+02 0.0054 22.0 5.0 29 357-385 25-53 (63)
61 1fxk_A Prefoldin; archaeal pro 20.3 1.5E+02 0.0051 23.6 5.1 30 356-385 66-95 (107)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-28 Score=240.68 Aligned_cols=138 Identities=28% Similarity=0.388 Sum_probs=117.8
Q ss_pred cccEEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCcee-cCHHHHHHHHHHHHH
Q 014126 2 SLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE-TNPEQLAAASAQADR 80 (430)
Q Consensus 2 ~l~~V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~drfE-IDPEql~aAq~eAee 80 (430)
+.+.|.|++.|+++|++||+++.|.||||+|+|.+.++. +..|+.+||++..+ ..++++ ++++ ++.+|.+
T Consensus 23 ~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~----~v~Vt~~f~~P~~~-~~~~v~~~d~~----y~~~m~~ 93 (306)
T 4b4t_V 23 TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDY----TVNVVDVFAMPQSG-TGVSVEAVDDV----FQAKMMD 93 (306)
T ss_dssp SCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTT----EEEEEEEECCCCEE-SSSCEECCCHH----HHHHHHH
T ss_pred CCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCe----EEEEEEEEeCCcCC-CCCchhcCCHH----HHHHHHH
Confidence 367899999999999999999999999999999866543 45678888877543 345666 4654 3566777
Q ss_pred HhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEeeCC
Q 014126 81 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDG 151 (430)
Q Consensus 81 l~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg 151 (430)
+++++++++++||||||||++++|||..||.||+.||.+.+++|+||+||.+. .+|.+.++|||+.+.
T Consensus 94 ~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t---~~G~~~i~Afr~~~~ 161 (306)
T 4b4t_V 94 MLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQS---VKGKVVIDAFRLIDT 161 (306)
T ss_dssp HHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSS---SSCSSCEEEEECCHH
T ss_pred HHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcC---CCCceeeeEEEecCc
Confidence 88899999999999999999999999999999999999999999999999863 568999999999763
No 2
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.95 E-value=1e-27 Score=214.06 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=114.2
Q ss_pred EEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCC--CCCCCceecCHHHHHHHHHHHHHHhh
Q 014126 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRS--DRRKDRVETNPEQLAAASAQADRMTV 83 (430)
Q Consensus 6 V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~ns--d~s~drfEIDPEql~aAq~eAeel~r 83 (430)
+.|++.++.+|+.||++++|+||||||+|..+... ...|..++|++|. +.+.++|++||+++.++++++++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~----~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~--- 73 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDG----DNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQE--- 73 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTS----CEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHH---
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCC----CeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHH---
Confidence 46899999999999999999999999999986221 2346677899887 66788999999999999888765
Q ss_pred hcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEeeCCCcceeccceeec
Q 014126 84 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALL 163 (430)
Q Consensus 84 ~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg~~~~i~~pi~~~ 163 (430)
+++++||||||||+++++||.+|+. ++.+++++|||+++..+ ....++||++.+.+....+.||.++
T Consensus 74 ---~g~~ivG~yHSHP~~~~~PS~~D~~-----~~~~~~~~~lIvs~~~~-----~~~~~~af~~~~~~g~~~e~~i~v~ 140 (153)
T 2kcq_A 74 ---QGLDVVGVYHSHPDHPARPSATDLE-----EATFPGFTYVIVSVRDG-----APEALTAWALAPDRSEFHREDIVRP 140 (153)
T ss_dssp ---HTCEEEEEEEECSSSSSSCCHHHHH-----TCCCTTSEEEEEEEETT-----EEEEEEEEEECTTCSCEEEECCBCC
T ss_pred ---CCCeEEEEEeCCCCCCCCCCHHHHH-----hhhcCCCeEEEEECCCC-----CccEEEEEEEeCCCCcEEEEEEEEe
Confidence 6899999999999999999999997 33468999999998642 1257999999554444467777766
Q ss_pred cCC
Q 014126 164 PVN 166 (430)
Q Consensus 164 ~~~ 166 (430)
+..
T Consensus 141 ~~~ 143 (153)
T 2kcq_A 141 DPE 143 (153)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
No 3
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.95 E-value=4.5e-27 Score=208.38 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=115.1
Q ss_pred EEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCceecCHHHHHHHHHHHHHHhhh
Q 014126 5 GVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVL 84 (430)
Q Consensus 5 ~V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~drfEIDPEql~aAq~eAeel~r~ 84 (430)
+|.|++.++.+|+.||+.++|.|+||||+|..+++ ...|+.++|++|...++++|++||+++.+++++++.
T Consensus 1 ml~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~-----~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~---- 71 (146)
T 2kks_A 1 MITLTKKQMEEMLAHARQALPNEACGLLGGRRDGD-----DRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK---- 71 (146)
T ss_dssp CEEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETT-----EEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH----
T ss_pred CEEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCC-----CcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH----
Confidence 37899999999999999999999999999998754 235677889998877788999999999999888865
Q ss_pred cCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEeeCCCcceeccceeec
Q 014126 85 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALL 163 (430)
Q Consensus 85 ~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg~~~~i~~pi~~~ 163 (430)
+|+++||||||||+.+++||.+|+. ++.+++++|||+++..+ +...++||++.+++.. +.||.+.
T Consensus 72 --~g~~ivG~~HSHP~~~~~PS~~D~~-----~~~~~~~~~lIvs~~~~-----~~~~~~af~~~~~~~~--e~~i~~~ 136 (146)
T 2kks_A 72 --NGWVMLGNFHSHPATPARPSAEDKR-----LAFDPSLSYLIISLAEP-----QKPVCKSFLIKKDGVD--EEEIILK 136 (146)
T ss_dssp --HTCEEEEEEEEESSSCSSCCHHHHT-----TCCSSSCEEEEEECSCS-----SSCEEEEEEECSSCEE--EECEEEE
T ss_pred --CCCEEEEEEeCCCcCCCCCCHHHHH-----hhhcCCCeEEEEEccCC-----CceEEEEEEEeCCeEE--EEEEEEe
Confidence 7899999999999999999999998 34568999999999752 3568999999777664 5556554
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.92 E-value=1.2e-25 Score=206.84 Aligned_cols=130 Identities=27% Similarity=0.339 Sum_probs=105.5
Q ss_pred cccEEEECHHHHHHHHHHHccCCC--ceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCcee-cCHHHHHHHHHHH
Q 014126 2 SLTGVKMSEDVWLTCLTHALSTET--EEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE-TNPEQLAAASAQA 78 (430)
Q Consensus 2 ~l~~V~Is~~Vll~Il~HA~s~~P--~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~drfE-IDPEql~aAq~eA 78 (430)
+++.|.|++.++.+|++||....| .||||+|+|...++ ...|+.++|.++.. +.++++ ++++++.++ +
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~-----~~~V~~v~~~pq~~-t~~~~~~~~~~e~~~~---~ 77 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN-----EFTITHVIVPKQSA-GPDYCDMENVEELFNV---Q 77 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT-----EEEEEEEEECCEEE-ETTEEEECCHHHHHHH---H
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC-----CeEEEEEEeCCcCC-CCCeeccCCHHHHHHH---H
Confidence 578899999999999999998754 79999999998754 24566677766543 445555 566665443 2
Q ss_pred HHHhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEeeCCCcc
Q 014126 79 DRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQN 154 (430)
Q Consensus 79 eel~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg~~~ 154 (430)
+ ++++++||||||||..+++||..|+++|+.||++++++++||+||... .++|||+.++...
T Consensus 78 ~------~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--------~~~afrl~~~g~~ 139 (178)
T 2znr_A 78 D------QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--------DTGIFRLTNAGML 139 (178)
T ss_dssp H------HHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--------EEEEEEECHHHHH
T ss_pred H------hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--------cceEEEEECCcEe
Confidence 2 379999999999999999999999999999999999999999999742 3899999876553
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.87 E-value=1.9e-22 Score=190.75 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=100.7
Q ss_pred cccEEEECHHHHHHHHHHHccCC--CceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCceec-CHHHHHHHHHHH
Q 014126 2 SLTGVKMSEDVWLTCLTHALSTE--TEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVET-NPEQLAAASAQA 78 (430)
Q Consensus 2 ~l~~V~Is~~Vll~Il~HA~s~~--P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~drfEI-DPEql~aAq~eA 78 (430)
.+..|.|+++++.+|+.||.... +.||||+|+|...++ +..|+.++..... ...+++++ +++++.+++.
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~-----~~~I~~v~~ppq~-gt~~~v~~~~~~e~~~~~~-- 111 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRN-----EFTITHVLIPKQS-AGSDYCNTENEEELFLIQD-- 111 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETT-----EEEEEEEEECCEE-ECSSCEEECCHHHHHHHHH--
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCC-----CEEEEEEEeCCcc-CCCCceeccChHHHHHHHh--
Confidence 35789999999999999999864 589999999998754 2345544422222 23455554 5565544431
Q ss_pred HHHhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEeeCCCcc
Q 014126 79 DRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQN 154 (430)
Q Consensus 79 eel~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg~~~ 154 (430)
. +++++||||||||..++|||..|+.+|+.||.+++++++||+||.. ..++|||+.+.+..
T Consensus 112 -~------~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~--------~~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 112 -Q------QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF--------QETGFFKLTDHGLE 172 (211)
T ss_dssp -H------HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT--------TEEEEEEECHHHHH
T ss_pred -h------CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--------CeeeEEEeccchhh
Confidence 1 6899999999999999999999999999999999999999999973 26999999865543
No 6
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.86 E-value=2.8e-21 Score=177.13 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=105.8
Q ss_pred cccEEEECHHHHHHHHHHHccC----CCceeEEEEeeeecCCCCceeEEEEEeeecCCCCC--CCCCceecCHHHHHHHH
Q 014126 2 SLTGVKMSEDVWLTCLTHALST----ETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSD--RRKDRVETNPEQLAAAS 75 (430)
Q Consensus 2 ~l~~V~Is~~Vll~Il~HA~s~----~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd--~s~drfEIDPEql~aAq 75 (430)
+++.|.|++.++++|++||.+. .+.||||+|+|...++ ...|+.+||+...+ ..++.+.+|++. +
T Consensus 6 ~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~-----~v~V~~~f~lp~~~~~~~~~~~~~d~ey----~ 76 (187)
T 2o95_A 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKK-----VLDVSNSFAVPFDEDDKDDSVWFLDHDY----L 76 (187)
T ss_dssp SCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSS-----EEEEEEEEEECEEECSSCTTSEEECHHH----H
T ss_pred CCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCC-----EEEEEEEEEeCCcccCCCcchhhcCHHH----H
Confidence 5789999999999999999764 7999999999998753 35678888776542 233467899873 3
Q ss_pred HHHHHHhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEee
Q 014126 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSS 149 (430)
Q Consensus 76 ~eAeel~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl~ 149 (430)
..+.++.++++.++.+||||||||.. |..|+.+|..||...+.+++||+||... .+.+.++||++.
T Consensus 77 ~~m~~~~~~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~----~~~l~i~ay~~~ 142 (187)
T 2o95_A 77 ENMYGMFKKVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPK----DLGLPTEAYISV 142 (187)
T ss_dssp HHHHHHHHTTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTT----C-CCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCC----CCCcCeEEEEEe
Confidence 44556778889999999999999976 6788888988998889999999999752 234899999985
No 7
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.81 E-value=5.7e-20 Score=158.65 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=78.9
Q ss_pred EEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCC-CceecCHHHHHHHHHHHHHHhh
Q 014126 5 GVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRK-DRVETNPEQLAAASAQADRMTV 83 (430)
Q Consensus 5 ~V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~-drfEIDPEql~aAq~eAeel~r 83 (430)
+|.|++.++.+|++||++++|+||||+|+|... .|+.++|+++...+. ..|.+ ++.
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~---------~v~~~~~~p~~~~~~~~~f~~----------~~~---- 59 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD---------VMDELIFLPFVSGSVSAVIHL----------DML---- 59 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT---------EECEEEECCCCC--------------------------
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC---------EEEEEEECCCCCCCcCceeee----------eec----
Confidence 578999999999999999999999999999742 234455555332111 12321 122
Q ss_pred hcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEe
Q 014126 84 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS 148 (430)
Q Consensus 84 ~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl 148 (430)
.+++++||||||||+.+++||.+|+++ +.+++.+|||+++..+ ...+++|+.
T Consensus 60 --~~~~~ivG~~HSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~~------~~~~~~f~~ 111 (124)
T 1oi0_A 60 --PIGMKVFGTVHSHPSPSCRPSEEDLSL-----FTRFGKYHIIVCYPYD------ENSWKCYNR 111 (124)
T ss_dssp ---CCCEEEEEEEEESSSCCSCCHHHHHH-----HHHSCSEEEEEETTCC------TTCEEEEET
T ss_pred --cCCCEEEEEEEECcCCCCccCHHHHHh-----hhcCCCEEEEEEccCC------CceEEEEec
Confidence 278999999999999999999999984 3458999999998542 346888987
No 8
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.74 E-value=4.1e-18 Score=151.57 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=96.9
Q ss_pred ccEEEECHHHHHHHHHHHccC-----CCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCceecCHHHHHHHHHH
Q 014126 3 LTGVKMSEDVWLTCLTHALST-----ETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQ 77 (430)
Q Consensus 3 l~~V~Is~~Vll~Il~HA~s~-----~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~drfEIDPEql~aAq~e 77 (430)
...|.|++.|+++|++|+.+. .+.+|+|+|+|...++ ...|+++||++-.+ ..+.+.+|.+ ++.+
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~-----~veV~nsF~~p~~~-~~~~~~~d~~----y~~~ 74 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGR-----NIEIMNSFELKTDV-IGDETVINKD----YYNK 74 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETT-----EEEEEEEEECCEEE-ETTEEEECHH----HHHH
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCC-----EEEEEEEEEecccC-CCCceeecHH----HHHH
Confidence 457999999999999999663 5789999999998764 45678777766432 2345788865 3566
Q ss_pred HHHHhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhCCCcEEEEEcCCCCCccccCceEEEEEEe
Q 014126 78 ADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS 148 (430)
Q Consensus 78 Aeel~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~p~~V~LIvSp~~~d~s~~G~i~lrAFRl 148 (430)
|.++.++++.++.+||||||||. ++..|+.+|..|+...+..|+||+||.. +..|.+.++||..
T Consensus 75 m~~~~k~v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~---~~~g~Lp~~ay~s 138 (141)
T 4e0q_A 75 KEQQYKQVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLS---RSVDHLPLKLFES 138 (141)
T ss_dssp HHHHHHHHSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSC---CCCTTHHHHHHCC
T ss_pred HHHHHHHhCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCc---cCCCeEEEEEEEE
Confidence 77888999999999999999984 7889999999999888999999999975 3345677777754
No 9
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.3e-12 Score=128.81 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=99.2
Q ss_pred cccEEEECHHHHHHHHHHHcc---CCCceeEEEEeeeecCCCCceeEEEEEeeecCC--CCCCCCCceecCHHHHHHHHH
Q 014126 2 SLTGVKMSEDVWLTCLTHALS---TETEEIMGLLLGDIEHSKNGNVTALIWGASPQS--RSDRRKDRVETNPEQLAAASA 76 (430)
Q Consensus 2 ~l~~V~Is~~Vll~Il~HA~s---~~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~--nsd~s~drfEIDPEql~aAq~ 76 (430)
..++|.|++.|++.|++|+.+ ..+..|+|.|+|..++. .+.|+.+|+++ ..+...+.+.+|.+ +..
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~-----~veV~nsF~~p~~e~~~~~~~~~~D~~----y~~ 74 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSS-----TIRVTNSFALPFEEDEKNSDVWFLDHN----YIE 74 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSS-----EEEEEEEEECCEEECSSSTTCEEECHH----HHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCC-----EEEEEEEEEeccccCCCCCccccccHH----HHH
Confidence 458899999999999999854 45678999999997653 45677777655 33333444567765 346
Q ss_pred HHHHHhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhC-CCcEEEEEcCCCCCccccCceEEEEEEee
Q 014126 77 QADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD-TGFIGLIFSCFSEDANKVGRIQVIAFQSS 149 (430)
Q Consensus 77 eAeel~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~-p~~V~LIvSp~~~d~s~~G~i~lrAFRl~ 149 (430)
.|.++.++++.++.+|||||++|. ++..|+..|..|+... +..+.+++++.. +.+.+.++||...
T Consensus 75 ~m~~~~kkV~~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~----~~~~lpi~aY~s~ 140 (338)
T 4b4t_U 75 NMNEMCKKINAKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQ----QGVGLPTDAYVAI 140 (338)
T ss_dssp HHHHHHHHHCCSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCC----CSSSCSEEEEEEE
T ss_pred HHHHHHhhcCccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCC----CCCCcceEEEEee
Confidence 677889999999999999999875 5667888888887655 467888888753 3467889999864
No 10
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=6.8e-10 Score=107.50 Aligned_cols=128 Identities=9% Similarity=0.122 Sum_probs=91.3
Q ss_pred cEEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEe-eecCCCCCCCCCceecCHH-HHHHHHHHHHHH
Q 014126 4 TGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG-ASPQSRSDRRKDRVETNPE-QLAAASAQADRM 81 (430)
Q Consensus 4 ~~V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~-a~P~~nsd~s~drfEIDPE-ql~aAq~eAeel 81 (430)
..+.|+..++.+++.-|.. ..++||+|.|....+.. + +.+|.. ++|-+. +..+.|++..+ ....
T Consensus 38 ~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~-~-v~eI~~ivippQ~--gt~~s~~~~~~~p~~~-------- 103 (254)
T 2og4_A 38 NVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHP-K-VKEIKTVVLVPQL--GHVGSVQISNIPDIGD-------- 103 (254)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCT-T-EEEEEEEECCCEE--EETTEEEECCCCCCTT--------
T ss_pred cEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCC-C-eEEEEEEEECCcc--CCCceEECCCcCcccc--------
Confidence 4688999999999988855 46899999999754321 1 333432 233222 23345555321 0000
Q ss_pred hhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhC-CCcEEEEEcCCCCCccccCceEEEEEEeeCCC
Q 014126 82 TVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD-TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGK 152 (430)
Q Consensus 82 ~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~-p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg~ 152 (430)
.....+++.+||.|+||.-.++.|..|+.||+.||.+| +..++|++++.. |...++||++++.+
T Consensus 104 -~~~l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftp------gs~sl~af~LT~~G 168 (254)
T 2og4_A 104 -LPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTP------GSVSLSAYNLTDEG 168 (254)
T ss_dssp -STTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEET------TEEEEEEEEECHHH
T ss_pred -chhhcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCC------CCceeEEEEcChhh
Confidence 00137999999999999999999999999999999855 899999999753 56889999998644
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.90 E-value=7.8e-09 Score=101.02 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=89.4
Q ss_pred cEEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEe-eecCCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014126 4 TGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG-ASPQSRSDRRKDRVETNPEQLAAASAQADRMT 82 (430)
Q Consensus 4 ~~V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~-a~P~~nsd~s~drfEIDPEql~aAq~eAeel~ 82 (430)
..+.|+..++.+++.-|.. ..++||+|.|....+.. + +.+|.. ++|-+. +..+.+++..+.- +. ++
T Consensus 39 ~t~vlPknllkkFi~IADl--rTq~~G~LyG~s~~d~~-~-vkeI~~ivipPQ~--gt~~sv~~~~~~p---~~---~~- 105 (273)
T 2p8r_A 39 YTYILPKNILKKFITISDL--RTQIAGFMYGVSPPDNP-Q-VKEIRCIVLVPQT--GSHQQVNLPTQLP---DH---EL- 105 (273)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEECCTTCT-T-EEEEEEEECCSBE--ECSSCEECCSSCC---CC---TT-
T ss_pred cEEEecHHHHHHHHHHhhc--cceEEEEEeccCCCCCC-C-eEEEEEEEECCcc--CCCceEECCCcCc---ch---hh-
Confidence 3588999999999987744 46899999999754321 1 334432 233222 2345566542100 00 01
Q ss_pred hhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhh---C--CCcEEEEEcCCCCCccccCceEEEEEEeeCC
Q 014126 83 VLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL---D--TGFIGLIFSCFSEDANKVGRIQVIAFQSSDG 151 (430)
Q Consensus 83 r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~---~--p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg 151 (430)
-.+++.+||.|+||.-.++.|..|+.||+.||.+ | +..|+|++++.. |...++||++++.
T Consensus 106 ---l~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftp------gs~sl~af~LT~~ 170 (273)
T 2p8r_A 106 ---LRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTP------GSVSLTAYKLTPS 170 (273)
T ss_dssp ---TTTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEET------TEEEEEEEEECHH
T ss_pred ---hccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCC------CCceeEEEEcChH
Confidence 1789999999999999999999999999999975 5 488999998743 5788999999863
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.07 E-value=8.3e-06 Score=85.55 Aligned_cols=127 Identities=10% Similarity=0.114 Sum_probs=86.2
Q ss_pred EEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEe-eecCCCCCCCCCceecC--HHHHHHHHHHHHHH
Q 014126 5 GVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG-ASPQSRSDRRKDRVETN--PEQLAAASAQADRM 81 (430)
Q Consensus 5 ~V~Is~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~-a~P~~nsd~s~drfEID--PEql~aAq~eAeel 81 (430)
.+.|+..++.+++.-|-. ..++||+|.|....+.. + +.+|.. ++|-+. +..+.|++. |+. + .
T Consensus 350 tyVlPkNLLkKFI~IADl--rTQicGyLyG~sp~dn~-n-VkEI~cIVipPQ~--Gt~~sv~lp~lp~h------e---~ 414 (565)
T 3sbg_A 350 VYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHP-K-VKEIKTVVLVPQL--GHVGSVQISNIPDI------G---D 414 (565)
T ss_dssp EEEEEHHHHHHHHHHSCS--SSCCEEEEEEEEETTEE-E-EEEEEEEECCCEE--ECSSCEEECCCCCC------T---T
T ss_pred EEEccHHHHHHHHHHhhc--cceeEEEEecCCCCCCC-C-eEEEEEEEECCcc--CCCceEECCCCCcc------c---c
Confidence 478999999999987743 46899999999764421 1 344432 233222 234566665 210 0 0
Q ss_pred hhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhhC-CCcEEEEEcCCCCCccccCceEEEEEEeeCCCc
Q 014126 82 TVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD-TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQ 153 (430)
Q Consensus 82 ~r~~~rgleVVGWYHSHP~~~a~PS~~DI~TQ~~YQ~~~-p~~V~LIvSp~~~d~s~~G~i~lrAFRl~dg~~ 153 (430)
+ ....+++.+||.|+||.-.+++|..|+.||+.+-... ..++.+.++.. .|.+.+.||.+.+.+.
T Consensus 415 ~-~~l~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsft------PGS~SLsAy~LT~eGy 480 (565)
T 3sbg_A 415 L-PDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST------PGSVSLSAYNLTDEGY 480 (565)
T ss_dssp S-TTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEE------TTEEEEEEEEECHHHH
T ss_pred c-cccccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEec------CCceEEEEEecCHhHH
Confidence 0 0127899999999999999999999999999763222 35666666653 4789999999986543
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=88.21 E-value=3.4 Score=35.73 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCceecCHHHHHHHHHHHHHHhhhcCCCc
Q 014126 10 EDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVLTGRTT 89 (430)
Q Consensus 10 ~~Vll~Il~HA~s~~P~EVCGLLlG~~~~d~~g~vv~~It~a~P~~nsd~s~drfEIDPEql~aAq~eAeel~r~~~rgl 89 (430)
+..+...+.......+.|...+|+= +... .++. ....+ .+.-+...++|.++. +.|.+ .+.
T Consensus 8 ~~~v~~~l~~~l~~~~~E~f~vl~L--d~~n--~li~-~~~l~-----~Gt~~~~~v~pRei~---~~Al~------~~A 68 (126)
T 2qlc_A 8 ARDVFEYMKGRIPDETKEHLFVLFL--STKN--QILR-HETIT-----IGTLTASLIHPREIF---KAAIR------ESA 68 (126)
T ss_dssp HHHHHHHHTTCCSCTTSCEEEEEEE--CTTC--BEEE-EEEEE-----ESSCCGGGCCHHHHH---HHHHH------TTC
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEEE--cCCC--CEEE-EEEec-----CCCCCcEeecHHHHH---HHHHH------cCC
Confidence 3334444444445567787665542 2211 1121 11111 123456778898764 33433 556
Q ss_pred eEEEEEecCCCCCCCCCHHHHHHH
Q 014126 90 RVIGWYHSHPHITVLPSHVDVRTQ 113 (430)
Q Consensus 90 eVVGWYHSHP~~~a~PS~~DI~TQ 113 (430)
.-|..-|-||.+.+.||..|+..-
T Consensus 69 ~~vIl~HNHPSG~~~PS~~D~~~T 92 (126)
T 2qlc_A 69 HSIILVHNHPSGDVQPSNADKQVT 92 (126)
T ss_dssp SEEEEEEECSSSCCSCCHHHHHHH
T ss_pred cEEEEEecCCCCCCCCCHHHHHHH
Confidence 888999999999999999999833
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=61.24 E-value=18 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-|||+.+++-.+...|+.|...|..-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46789999999999999999988887665
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.17 E-value=21 Score=35.84 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccceeehhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 306 RVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 306 ~il~~ee~~ay~~a~~q~~~~~~~~~l~~ih~~~~~~~~~~~~~~~~~~p~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+..-+.|...+.+.++|-+ +-+-+=.--.--|++-|.+. ..-+..+|+....+.+.|+++|+.|.+.|++++
T Consensus 388 ~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 388 GLRAVMEARNVTHLLQQEL-----TEAQKGFQDVEAQAATANHT---VMALMASLDAEKAQGQKKVEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhHHHHHHHHH-----HHHhhhHHHHHHHhhhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665543 11211112222344445432 223344555555555566666666666666555
No 16
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=50.33 E-value=0.93 Score=35.59 Aligned_cols=29 Identities=38% Similarity=0.434 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 358 SALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 358 ~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
++|+..|.+|+-.|+.|+.|..+||+|+.
T Consensus 2 qalekelaqnewelqalekelaqlekelq 30 (80)
T 2lq4_p 2 QALEKELAQNEWELQALEKELAQLEKELQ 30 (80)
T ss_dssp CSSHHHHSSSSTTTHHHHTTHHHHHHHHT
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999993
No 17
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.19 E-value=28 Score=27.40 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
|..|+.+.++.+..+..|+++...|++++..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999843
No 18
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.54 E-value=39 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-|+|+.++-..+...|+.|...|...+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 46688888888888888888888877665
No 19
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=46.29 E-value=43 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-|||++++--.+...|+.|...|..-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45677777777777777777777766554
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.00 E-value=38 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
+.+|+.-+.+-+.++..|+++.++|.+++.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888999999999999999999999854
No 21
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.93 E-value=44 Score=24.03 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 360 LQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 360 l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
|+.|..|-+.|+..|+.|...|.+-+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44555555555555555555555444
No 22
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.77 E-value=50 Score=22.73 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-||||.++--.+-..|++|...|..-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677777776666666777766666554
No 23
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.04 E-value=37 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
++-|||+.++-..+-..|+.|...|+..+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 356888888888888888888888887763
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.88 E-value=63 Score=22.09 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-|||++++--.+-..|+.|...|..-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35567777766666666666666665544
No 25
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=38.09 E-value=62 Score=22.63 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 356 AISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 356 ~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
-|+.|=|||..--.++..|+.+.+.|+.++
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999987
No 26
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=37.69 E-value=1.6e+02 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 356 AISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 356 ~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
-+..|.++++|-+-|..+|+.|..-|..-.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346788888888888888888887776655
No 27
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.82 E-value=56 Score=23.46 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
+..||.|.++-+.+.++|++..--|+.|.+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567999999999999999999999999874
No 28
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.67 E-value=36 Score=23.26 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 363 RLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 363 rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
|..|-+-++.+|-.++..|+.|..+
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHH
Confidence 5678888999999999999999853
No 29
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.12 E-value=55 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-|||+.++--.+...|+.|...|..-+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35577777777777777777777766544
No 30
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.01 E-value=73 Score=25.85 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 356 AISALQDRLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 356 ~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
....++.+|++.+.|-..|..|.+.|+.++..
T Consensus 39 ~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 39 DNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888877644
No 31
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.16 E-value=44 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 363 RLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 363 rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
|..|-+-++..|-.+++.|+.|..+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6778889999999999999999743
No 32
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.77 E-value=77 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 345 MCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 345 ~~~~~~~~~~p~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
|.+-++| |..|+++.++.+.....|+.|.++|.+++.
T Consensus 42 L~kA~~y-----I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 42 LTKAKLH-----IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555 567899988888899999999999998874
No 33
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.50 E-value=87 Score=31.24 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 362 DRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 362 ~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
.|++|.+-++..|..+.+.+++|++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666553
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.31 E-value=61 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 358 SALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 358 ~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+-||||.++--.+-..|+.|...|..-+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567777666666666666666665544
No 35
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.09 E-value=79 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
|...+.|+++-+.+|+++.++.+.|..++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888887
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.54 E-value=49 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 362 DRLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 362 ~rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
.|..|-+-++..|-.++..|+.|..+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 36778889999999999999999853
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.30 E-value=86 Score=23.67 Aligned_cols=28 Identities=36% Similarity=0.348 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 358 SALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 358 ~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
..|++++++-+.+-..|..+...|+.|+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554
No 38
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.11 E-value=43 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 363 RLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 363 rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
|..|-+.++.+|-.++..|+.|..+
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHH
Confidence 5567788999999999999999853
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.73 E-value=96 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 356 AISALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 356 ~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
-+..|+++.++-+..-..|..+...|..|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888877777788888888887773
No 40
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.61 E-value=1.3e+02 Score=20.68 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
++-|+|++++--.+...|+.|...|..-+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35567777777667777777766665544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.44 E-value=44 Score=34.20 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCCCCCC
Q 014126 359 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLS--SPHHSPSH 402 (430)
Q Consensus 359 ~l~~rl~~n~~~~~~l~~e~~~l~~~~~~~~~~~~~--~~~~~~~~ 402 (430)
.|+.++++.+.++.+|++|...+.+|+++-.+.--+ +-||+.-|
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~ 593 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHH 593 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 456666667777777777765555555433322222 44555444
No 42
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein; 2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Probab=25.61 E-value=52 Score=31.27 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=35.7
Q ss_pred ccceeehhhHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHH
Q 014126 331 PLTYIHHTSTYQASMCKLIEYCLSP-----AISALQDRLKENEIRLAMLT 375 (430)
Q Consensus 331 ~l~~ih~~~~~~~~~~~~~~~~~~p-----~~~~l~~rl~~n~~~~~~l~ 375 (430)
=..+||.+.+-|+.+|+.|..=+.- -..-|++|+++.+.+|+.|+
T Consensus 188 F~~si~s~dsaqqdI~~Fm~~nl~~GFs~ytf~Gl~~rva~leaqlaaL~ 237 (241)
T 3seo_A 188 FYSAFKNTDTAKQDITKFMKDNLQAGFSGYSYQGLTNRVAQLEAQLAALS 237 (241)
T ss_dssp HHHTCCCTTTHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHH
Confidence 3467999999999999999765432 34568999999988888775
No 43
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=25.37 E-value=83 Score=29.86 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014126 359 ALQDRLKENEIRLAMLTDEAKSLESEAFKGS 389 (430)
Q Consensus 359 ~l~~rl~~n~~~~~~l~~e~~~l~~~~~~~~ 389 (430)
.|.+.+..++.+++.|++-++.|+++++.|-
T Consensus 390 ~ld~~i~~~~~~~~~l~~~k~~Ll~~l~~G~ 420 (425)
T 1yf2_A 390 SVDKSIELKKQKKEKLQRMKKKIMELLLTGK 420 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5667778888899999999999999998873
No 44
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.33 E-value=2.4e+02 Score=23.56 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014126 367 NEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 367 n~~~~~~l~~e~~~l~~~~~ 386 (430)
.+.|+++|+.|.+.|.+++.
T Consensus 65 qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888877763
No 45
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.29 E-value=66 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 363 RLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 363 rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
|..|-+-++.+|-.++..|+.|..+
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHH
Confidence 5678888999999999999999853
No 46
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.99 E-value=61 Score=22.29 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 358 SALQDRLKENEIRLAMLTDEAKSLES 383 (430)
Q Consensus 358 ~~l~~rl~~n~~~~~~l~~e~~~l~~ 383 (430)
+-|||++++--.+-..|+.|...|..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44566666555555555555555544
No 47
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.89 E-value=85 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 362 DRLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 362 ~rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
.|..|-+-++..|-.++..|+.|+.+
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHH
Confidence 37788899999999999999999853
No 48
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=24.55 E-value=1.1e+02 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014126 359 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 390 (430)
Q Consensus 359 ~l~~rl~~n~~~~~~l~~e~~~l~~~~~~~~~ 390 (430)
.|.+.+..++.+++.|++-++.|.+++|.|--
T Consensus 366 ~id~~i~~~~~~i~~L~~lk~~LL~~lf~G~l 397 (406)
T 1ydx_A 366 LLDQKLDQYKKELSSLTVIRDTLLKKLFPDMT 397 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46677888889999999999999999998853
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.54 E-value=1.2e+02 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+..||++.+.-+..-..|..+...|..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665555555555555555555554
No 50
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.38 E-value=1.1e+02 Score=24.59 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
|..|+++.+.....+..|+.+..+|.+++.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888899999999998874
No 51
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.25 E-value=70 Score=26.13 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014126 358 SALQDRLKENEIRLAMLTDEAKSLESEAF 386 (430)
Q Consensus 358 ~~l~~rl~~n~~~~~~l~~e~~~l~~~~~ 386 (430)
..|+.|+++-+.+.+.|..+..++++++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888888888888888888888888774
No 52
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.13 E-value=90 Score=27.77 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+..||.|+++.+.++.+++.+..+|+.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRF 30 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766666666665443
No 53
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.73 E-value=71 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 362 DRLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 362 ~rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
.|..|-+.++.+|..++..|+.|..+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 36788889999999999999998743
No 54
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.97 E-value=1e+02 Score=23.43 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 362 DRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 362 ~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+++.+-+.+++.|+.|...|.+++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.44 E-value=1.2e+02 Score=24.39 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLES 383 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~ 383 (430)
+..|++|.+.-+.+++.|+...+.++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444444444444444433
No 56
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=22.40 E-value=2.6e+02 Score=27.46 Aligned_cols=58 Identities=9% Similarity=0.202 Sum_probs=43.0
Q ss_pred ceeehhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014126 333 TYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 390 (430)
Q Consensus 333 ~~ih~~~~~~~~~~~~~~~~~~p~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~~~~~~ 390 (430)
.++|...+|-...+.++.--+.|.+.+|...+++.+.++...+++...+.+++.....
T Consensus 225 ~~~~a~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (407)
T 4h8s_A 225 GFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDE 282 (407)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3445555555555565555578999999999999999999888888888888854443
No 57
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.93 E-value=76 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014126 363 RLKENEIRLAMLTDEAKSLESEAFK 387 (430)
Q Consensus 363 rl~~n~~~~~~l~~e~~~l~~~~~~ 387 (430)
|..|-+-++.+|-.++..|+.|+.+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHH
Confidence 6778888999999999999999854
No 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.95 E-value=1.2e+02 Score=25.66 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 356 AISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 356 ~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
-|.-|++||.+.+-+.+.|..+++.|+.++
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888776
No 59
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.85 E-value=1.5e+02 Score=20.41 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 358 SALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 358 ~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+-|+|+.++--.+-..|+.|...|..-+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566666666666666666666665443
No 60
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.52 E-value=1.6e+02 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 357 ISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 357 ~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+..|+++.+.-+..-..|..+...|..|+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554455555555555444
No 61
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.34 E-value=1.5e+02 Score=23.55 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014126 356 AISALQDRLKENEIRLAMLTDEAKSLESEA 385 (430)
Q Consensus 356 ~~~~l~~rl~~n~~~~~~l~~e~~~l~~~~ 385 (430)
+...|+.|.+.-+.+++.|+...+.++.++
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555555554
Done!