BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014127
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVZ|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVZ|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 346 RPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL-- 403
RPL E K +G +G + +DSI A + + +AK + YL + W Y +
Sbjct: 154 RPLIEGKSITGFTDVGETIXGVDSILKAKNLATVED-VAKKYGAKYLAPVGPWDDYSITD 212
Query: 404 --LSHSQSSAEARSGAVFSLENINN 426
L + A A S AV S++ + N
Sbjct: 213 GRLVTGVNPASAHSTAVRSIDALKN 237
>pdb|1QVW|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVW|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 346 RPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL-- 403
RPL E K +G +G + +DSI A + + +AK + YL + W Y +
Sbjct: 154 RPLIEGKSITGFTDVGETIMGVDSILKAKNLATVED-VAKKYGAKYLAPVGPWDDYSITD 212
Query: 404 --LSHSQSSAEARSGAVFSLENINN 426
L + A A S AV S++ + N
Sbjct: 213 GRLVTGVNPASAHSTAVRSIDALKN 237
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 248 KIIQLEDKAKKLEGN--IEMTRKEIED--PTEVEIELKRRLGQLTDHLIQ 293
KI Q++D KKL + IE +I+ T + IE+K R QL DH++Q
Sbjct: 324 KIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQLKDHILQ 373
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 248 KIIQLEDKAKKLEGN--IEMTRKEIED--PTEVEIELKRRLGQLTDHLIQ 293
KI Q++D KKL + IE +I+ T + IE+K R QL DH++Q
Sbjct: 321 KIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQLKDHILQ 370
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 217 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE------------ 264
+ G+Y + + REI E ++ + + ++Q + +L G +
Sbjct: 199 KAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETD 258
Query: 265 ------MTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318
TR +ED E + +L+ +G D + A V L+S+K L +EA+ L
Sbjct: 259 LLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPGL 317
Query: 319 LDEN 322
L++
Sbjct: 318 LEQG 321
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 217 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI------------- 263
+ G+Y + + REI E ++ + + ++Q + +L G +
Sbjct: 199 KAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETD 258
Query: 264 -----EMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318
TR +ED E + +L+ +G D + A V L+S+K L +EA+ L
Sbjct: 259 LLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPGL 317
Query: 319 LDEN 322
L++
Sbjct: 318 LEQG 321
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 217 QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIE------------ 264
+ G+Y + + REI E ++ + + ++Q + +L G +
Sbjct: 199 KAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETD 258
Query: 265 ------MTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 318
TR +ED E + +L+ +G D + A V L+S+K L +EA+ L
Sbjct: 259 LLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG-LDLVLEALPGL 317
Query: 319 LDEN 322
L++
Sbjct: 318 LEQG 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,811,203
Number of Sequences: 62578
Number of extensions: 296162
Number of successful extensions: 780
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 38
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)