BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014127
(430 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
Length = 668
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/347 (65%), Positives = 279/347 (80%), Gaps = 4/347 (1%)
Query: 86 ILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAF 145
+ AEK A KA IKERENMVARLEGEK SLEKI+EERAKQQ +EA+ELQT+MMET++A
Sbjct: 320 VFAEKVATKAVAVIKERENMVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAA 379
Query: 146 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 205
+LEKQ+HNNTRME L LA LE NA+L R+LAA QKKLE + +QVA L+QQ ELKE
Sbjct: 380 DLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTL 439
Query: 206 EELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 265
EEL + N G LK+L S+G +FE ++LEAE + + DKI +L+DKA KLE +IEM
Sbjct: 440 EELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEM 499
Query: 266 TRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV 325
RKE+E+PTEVEIELKRRL QLTDHLIQKQ+QVEALSSEKAT+ FRIEAVSRL++ENK +
Sbjct: 500 MRKELEEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKATILFRIEAVSRLIEENKGM 559
Query: 326 --TGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPI 383
T +SS+DLE G W+LS S +P F++KIRSGKKH+G L+ QL++IF++G VFLRRNP
Sbjct: 560 SATEASSQDLEAGDWELSGSKFKPAFQDKIRSGKKHLGWLVMQLNAIFISGTVFLRRNPT 619
Query: 384 AKLWSLVYLVCLHLWVIYILLSHSQ--SSAEARSGAVFSLENINNTA 428
AK+W++VYLVCLHLWV+YILLSHS SS E RSGAV SLEN +N++
Sbjct: 620 AKIWAVVYLVCLHLWVLYILLSHSDASSSGELRSGAVISLENFSNSS 666
>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1
Length = 722
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 153/311 (49%), Gaps = 38/311 (12%)
Query: 113 KQSLEKILEERAK--QQVKEASELQTSMMETMDAFELEKQRH--NNTRMEALQLLAKLET 168
KQ +IL+ + K +KE S ++ + ELE+ RH + R E +L+ +++
Sbjct: 423 KQKATRILQSKEKLINSLKEGSGIEGLDSHSASTMELEEMRHERDMQREEIQKLMGQIQQ 482
Query: 169 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAAS 228
A+L ++ET QV+E E + HE+ + + + L+R
Sbjct: 483 LKAELQ----------DVETQQVSEAESAREQLQDVHEQFATQQRAKQELEAELER--QK 530
Query: 229 KGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLT 288
+ ++ +E L + +I ED+ +KL ++T K + ++ E+E RL QLT
Sbjct: 531 QEFQYIQEDLYKTKNTLQGRIRDREDEIQKLRN--QLTNKALSSSSQTELE--NRLHQLT 586
Query: 289 DHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLS------- 341
+ LIQKQ +E LS+EK +L +++E RL + K V GSS L + ++S
Sbjct: 587 ETLIQKQTMLENLSTEKNSLVYQLE---RLEHQLKNVQGSS---LNGTSINMSVIESNEG 640
Query: 342 --QSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKLWSLVYLVCLH 396
N+ LF + + G + K SI + +FLRR PIA+++ ++Y+ LH
Sbjct: 641 ARMRNVPVLFSDSDPNVAGMYGRVRKAATSIDQFSIRLGIFLRRYPIARVFIIIYMALLH 700
Query: 397 LWVIYILLSHS 407
LWV+ +LL+++
Sbjct: 701 LWVMIVLLTYT 711
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2
Length = 729
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 173/355 (48%), Gaps = 44/355 (12%)
Query: 78 ERRKLKEKI-LAEKAAAKAGDAIKERENMV----ARLEGEKQSL-------EKILEERAK 125
+R+ L E + LAE+ ++ + E + V A LE KQ L +IL+ + K
Sbjct: 383 DRQNLAEAVTLAERKYSEEKKKVDELQQQVKLHRASLESAKQELVDYKQKATRILQSKEK 442
Query: 126 --QQVKEASELQTSMMETMDAFELEKQRHNN--TRMEALQLLAKLETANADLARALAAAQ 181
+KE S + T + ELE+ RH + E +L+ ++ ++L
Sbjct: 443 LINSLKEGSSFEGLESSTASSMELEELRHEKEMQKEEIQKLMGQMHQLRSELQ------- 495
Query: 182 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 241
+ME QV+E E + ++++++ ++ + L+R+ + + E L
Sbjct: 496 ---DMEAQQVSEAESAREQLQDLQDQIAKQRTSKQELETELERM--KQEFRYMEEDLHRT 550
Query: 242 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEAL 301
+ +I E++ +KL ++T K + + ++ E+E RL QLT+ LIQKQ +E+L
Sbjct: 551 KNTLQSRIKDREEEIQKLRN--QLTNKTLSNSSQSELE--SRLHQLTETLIQKQTMLESL 606
Query: 302 SSEKATLAFRIEAVSRLLDE--NKPVTGSSSRDLEFGAWDLSQS----NLRPLFEEKIRS 355
S+EK +L F++E + + + + P +GS+ + D + N+ LF + +
Sbjct: 607 STEKNSLVFQLERLEQQVHSASSGPNSGSA---INMSGVDSGEGTRLRNVPVLFNDTETN 663
Query: 356 GKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 407
G + K SI + +FLRR PIA+++ ++Y+ LHLWV+ +LL++S
Sbjct: 664 LAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVLLTYS 718
>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1
SV=1
Length = 728
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 109/201 (54%), Gaps = 19/201 (9%)
Query: 223 KRLAASKGVEFEREILEAEYTFIADKIIQ----LEDKAKKLEGNIEMTRKEIEDPT---E 275
K+ A+ + +E E + ++ E+ ++ + + + L+ + K E I+ R ++ + T
Sbjct: 520 KQRASKQELETELDRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNS 579
Query: 276 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE--NKPVTGSSSRDL 333
+ EL+ RL QLT+ LIQKQ +E+LS+EK +L F++E + + L P +GSS +
Sbjct: 580 SQSELESRLHQLTETLIQKQTLLESLSTEKNSLVFQLERLEQQLHSAATGPSSGSS---I 636
Query: 334 EFGAWDLSQS----NLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKL 386
D + N+ LF + + G + K SI + +FLRR PIA++
Sbjct: 637 NMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 696
Query: 387 WSLVYLVCLHLWVIYILLSHS 407
+ ++Y+ LHLWV+ +LL++S
Sbjct: 697 FVIIYMALLHLWVMIVLLTYS 717
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1
Length = 760
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 190/411 (46%), Gaps = 64/411 (15%)
Query: 40 RASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAI 99
R +L D GSS S+ +E+ +RE+E R+++ + A
Sbjct: 360 RVRILQDHSEGSSLHSQAVQTLQDRLRDAEAAVKREQESYRQIQSEFAAR---------- 409
Query: 100 KERENMVARLEGEKQSLEKIL---EERAKQQVKEASELQTSMMETMDAFELEKQRHNNTR 156
+A++E E+Q+L + L E R ++ + A +LQ + A E KQ + +
Sbjct: 410 ------LAKVEAERQTLAESLTNAERRLTEEKQRAEDLQQQAKSSRSAAEYTKQELQDYK 463
Query: 157 MEALQLLAK----------------LETANADLARALAAAQKKLEME-----TNQVAELR 195
+A ++L LE A A + +K+L+ E Q+ LR
Sbjct: 464 NKASRILQSKEKLINSLKEGSGLEVLEGAGAGVELEELRHEKELQREEIQKLQAQIQSLR 523
Query: 196 QQTELKEVAHEELSQRNSNTHQTG----IYLKRLAASKGVEFEREILEAEYTFIADKI-- 249
TE++++ + L++ S Q + +++ A + +E E E + E +I ++
Sbjct: 524 --TEIQDLETQALTENESWREQLAEVQEQHAQQIRAKQEIEAELERSKQELQYIEEEHHR 581
Query: 250 --IQLEDKAKKLEGNIEMTRKEIED---PTEVEIELKRRLGQLTDHLIQKQAQVEALSSE 304
I L+ + K E I+ R ++ + + EL+ RL QLT+ LIQKQ +EAL +E
Sbjct: 582 TKITLQGRVKDREDEIQKLRNQLTNKALSNSSQAELEGRLHQLTETLIQKQTMLEALGTE 641
Query: 305 KATLAFRIEAVSRLLDENKPVTG--SSSRDLEFGAWD---LSQSNLRPLFEEKIRSGKKH 359
K +L F++E RL + K + G +S+ + A + Q N LF + G
Sbjct: 642 KNSLVFQLE---RLEQQLKSLQGGQNSASHINMAAMEGPGARQRNTPILFSDGDGPGTGV 698
Query: 360 IGSLLKQLDSIFLAGV---VFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 407
G + K +I + +FLRR P+A+++ ++Y+ LHLWV+ +LL+++
Sbjct: 699 YGKVRKAASTIDRFSIRLGIFLRRYPMARVFVIIYMALLHLWVMIVLLTYT 749
>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3
Length = 731
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 170/359 (47%), Gaps = 52/359 (14%)
Query: 78 ERRKLKEKI-LAEKAAAKAGDAIKERENMVA----RLEGEKQSL-------EKILEERAK 125
ER+ L E I LAE+ + + E + V LE KQ L +IL+ + K
Sbjct: 385 ERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEK 444
Query: 126 --QQVKEASELQTSMMETMDAFELEKQRHNN--TRMEALQLLAKLETANADLARALAAAQ 181
+KE S + T + ELE+ RH R E +L+ ++ ++L
Sbjct: 445 LINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQ------- 497
Query: 182 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 241
+ME QV E E + H++++ + A+ + +E E E L+ E
Sbjct: 498 ---DMEAQQVNEAESAREQLQDLHDQIAGQK-------------ASKQELETELERLKQE 541
Query: 242 YTFIADKIIQ----LEDKAKKLEGNIEMTRKEIEDPT---EVEIELKRRLGQLTDHLIQK 294
+ +I + + + L+ + K + I+ R ++ + T + EL+ RL QLT+ LIQK
Sbjct: 542 FHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQK 601
Query: 295 QAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLR--P-LFEE 351
Q +E+LS+EK +L F++E + + ++ + + S G + + LR P LF +
Sbjct: 602 QTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLFND 661
Query: 352 KIRSGKKHIGSLLKQLDSIFLAGV---VFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 407
+ G + K SI + +FLRR PIA+++ ++Y+ LHLWV+ +LL+++
Sbjct: 662 TETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVLLTYT 720
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
Length = 707
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 156/348 (44%), Gaps = 30/348 (8%)
Query: 95 AGDAIKERENMVARLEGEKQSL----EKILEERAKQQVKEASELQTSMMETMDAFELEKQ 150
A DA+K N A EG+ SL E I+ R + + L+ + T E E+
Sbjct: 362 AMDALK---NQAALNEGKLSSLQGDMESIMRNRELAETRMMQALREELATTERRAEEERS 418
Query: 151 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 210
HN T+M A++ +LE D + AL Q+ + T +VA+ Q+ L E E +
Sbjct: 419 AHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEA---ECTS 475
Query: 211 RNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQ-----------LEDKAKKL 259
N + +R E + I + D+ Q +E + +KL
Sbjct: 476 LNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKL 535
Query: 260 EGNIEMTRKEIEDPTEVE-IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA-VSR 317
+ +++ E + E EL++R +LTD L KQ Q+E ++SEKA F++E V R
Sbjct: 536 RVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKR 595
Query: 318 LLDENKPVTGSSSRDLEFGAWDLSQSNLR-----PLFEEKIRSGKKHIGSLLKQLDSIFL 372
L + V S W+ S ++ PL+ + + + + +K LDS +
Sbjct: 596 LHEAQVEVEKSRVSRRASATWE-EDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAV 654
Query: 373 AGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFS 420
FL R PIA+++ L YLV +HL+++Y L+ Q AEA+ A +
Sbjct: 655 RATRFLWRYPIARMFLLFYLVFVHLFLMY-LIHRLQEQAEAQEVAAMT 701
>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1
Length = 709
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 24/271 (8%)
Query: 152 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ- 210
HN T+M A++ +LE + + ALA Q+ + +++ EL + + EV L Q
Sbjct: 420 HNATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMELEHKVAVLEVECASLQQE 479
Query: 211 ------RN-----SNTHQTGIYLKRLAASKGVEFEREIL-EAEYTFIADKIIQLEDKAKK 258
RN + + ++ A + VE R+ EAE KI LE + +K
Sbjct: 480 LQEMEARNRRAQKKPSEEANQVIQMQAWQEEVERARQSQREAET-----KISSLEAELQK 534
Query: 259 LEGNIEMTRKEIEDPTEVE-IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE-AVS 316
+ + +++ E + E +EL++R +LTD L KQ Q+E+++SEKA L F++E ++
Sbjct: 535 MRVEMAGMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQLESMASEKAALEFQLEKSIK 594
Query: 317 RLLDENKPVTGSSSRDLEFGAW----DLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFL 372
+ + S AW D+ PL + + + + K LDS +
Sbjct: 595 QFHEVQMEAERSRVARRSASAWEEDADIKALEPLPLHHRHMATANQQLQKAAKLLDSGAV 654
Query: 373 AGVVFLRRNPIAKLWSLVYLVCLHLWVIYIL 403
FL R+P+A++ L YLV +HL+++Y++
Sbjct: 655 RATRFLWRHPVARVSLLFYLVFVHLFLMYLM 685
>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2
Length = 516
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 283 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVT-----GSSSRDLEFGA 337
RL LT L+++Q+ +E ++SE+ L + E L +N + SSR +
Sbjct: 383 RLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNS 442
Query: 338 WDLSQSNLRPL------FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVY 391
D ++ PL F+ ++ + L+Q DS+ + FLRR P+ ++ +VY
Sbjct: 443 TDDVKAQF-PLLMHPSPFDNRV---ARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVY 498
Query: 392 LVCLHLWVIYILLS 405
+ LHLWV+++LLS
Sbjct: 499 VALLHLWVMFVLLS 512
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2
Length = 1639
Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 22/248 (8%)
Query: 83 KEKILAEKAAAKAGDAIKEREN----MVARLEGEKQSLEKILEERAKQQVKEASELQTSM 138
K+ + A + A + I E N + A E E++ E +L+ RA+QQ E EL
Sbjct: 1314 KDAVAANERADELLKQITELSNSNGELFADFETEQELTEALLK-RAEQQQLEDIELLERA 1372
Query: 139 METMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 198
D ++ +NT EA KL +D+ R+ +A+K L+ N E++
Sbjct: 1373 KAAHDKATKAVEQGDNTLKEANNTYEKLAGFQSDVQRSSESAEKALQTVPNIEKEIQNAE 1432
Query: 199 ELKEVAHEELSQRNSNTHQTGIYLKRL------AASKGVEFEREILEAEYTFIADKIIQL 252
L A E L N N ++ + ASK E R +A T +A + L
Sbjct: 1433 SLISQAEEALDGANKNANEAKKNAQEAQLKYAEQASKDAELIRR--KANETKVAAR--NL 1488
Query: 253 EDKAKKLEGNIEMTRKEI---EDPTEVEIEL----KRRLGQLTDHLIQKQAQVEALSSEK 305
++A +L +++T +I E+ + + L KR++GQ + Q Q+E +++
Sbjct: 1489 REEADQLNHRVKLTEMDIFKLEESSTKDDNLVDDAKRKVGQAKADTQEAQKQIEKANADL 1548
Query: 306 ATLAFRIE 313
+ +E
Sbjct: 1549 TAIKDELE 1556
>sp|P90970|GOGA5_CAEEL Golgin-84 OS=Caenorhabditis elegans GN=T24B1.1 PE=3 SV=2
Length = 530
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 364 LKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS 407
L +DS + LR +P A+L+ ++Y + +HLW+ +I+L+++
Sbjct: 483 LHTVDSTAFKLLSMLRGHPSARLFFVLYFIIMHLWLFFIVLTYT 526
>sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1 SV=1
Length = 1976
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 128 VKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL--AAAQKKLE 185
+K A ELQ + E + FE EK N + L +LE +L L AAQ++L
Sbjct: 1110 LKVARELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELR 1169
Query: 186 METNQ-VAELRQQTELKEVAHEELSQRNSNTHQTGI--------YLKRLAAS-----KGV 231
+ Q VAEL++ E + HE Q H T + KR A+ +G+
Sbjct: 1170 TKREQEVAELKKALEDETKNHEAQIQDMRQRHATALEELSEQLEQAKRFKANLEKNKQGL 1229
Query: 232 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 291
E + + L E + + E K KKL+ ++ ++ + + +EL + +L + L
Sbjct: 1230 ETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNEL 1289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,597,983
Number of Sequences: 539616
Number of extensions: 5397453
Number of successful extensions: 59450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 3116
Number of HSP's that attempted gapping in prelim test: 42349
Number of HSP's gapped (non-prelim): 14101
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)